Citrus Sinensis ID: 014247
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 428 | 2.2.26 [Sep-21-2011] | |||||||
| Q08A71 | 435 | Probable protein arginine | yes | no | 0.997 | 0.981 | 0.727 | 0.0 | |
| Q75G68 | 395 | Probable protein arginine | yes | no | 0.829 | 0.898 | 0.651 | 1e-142 | |
| A2Z8S0 | 395 | Probable protein arginine | N/A | no | 0.829 | 0.898 | 0.651 | 1e-142 | |
| Q7XKC0 | 391 | Probable protein arginine | no | no | 0.901 | 0.987 | 0.59 | 1e-137 | |
| A2XYY8 | 379 | Probable protein arginine | N/A | no | 0.866 | 0.978 | 0.597 | 1e-133 | |
| Q6NWG4 | 349 | Protein arginine N-methyl | yes | no | 0.721 | 0.885 | 0.444 | 2e-76 | |
| Q6NZB1 | 378 | Protein arginine N-methyl | yes | no | 0.747 | 0.846 | 0.440 | 1e-74 | |
| B0JYW5 | 340 | Protein arginine N-methyl | yes | no | 0.728 | 0.917 | 0.433 | 1e-74 | |
| Q96LA8 | 375 | Protein arginine N-methyl | yes | no | 0.747 | 0.853 | 0.429 | 1e-74 | |
| Q5E9L5 | 375 | Protein arginine N-methyl | yes | no | 0.726 | 0.829 | 0.434 | 2e-74 |
| >sp|Q08A71|ANM6_ARATH Probable protein arginine N-methyltransferase 6 OS=Arabidopsis thaliana GN=PRMT6 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 639 bits (1648), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/436 (72%), Positives = 355/436 (81%), Gaps = 9/436 (2%)
Query: 1 MYSSIGYSNGHHHHHQPHQQERERMGGGLTSH---KDRARRGGRRSR----DSLRASEHQ 53
M S +SNG H H + ++ G L+S K R+ G R R + LR S+
Sbjct: 1 MQSGGDFSNGFHGDHHRELELEDKQGPSLSSFGRAKKRSHAGARDPRGGLANVLRVSDQL 60
Query: 54 QQQQQQQQNDRKPATPCTDFDVAYFHSYAHVGIHEEMIKDRVRTETYRAAIMQNQSFIEG 113
+ + + ++ P PCTDFDVAYFHSYAHVGIHEEMIKDR RTETYR AIMQ+QS IEG
Sbjct: 61 GEHKSLETSESSPP-PCTDFDVAYFHSYAHVGIHEEMIKDRARTETYREAIMQHQSLIEG 119
Query: 114 KVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDV 173
KVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQA EVVKAN L+DKVIVLHGRVEDV
Sbjct: 120 KVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQAKEVVKANGLSDKVIVLHGRVEDV 179
Query: 174 EIDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYS 233
EIDEEVDVIISEWMGYMLLYESMLGSVITARDRWLK GGLILPS+ATLYMAP++HPDRYS
Sbjct: 180 EIDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKPGGLILPSHATLYMAPISHPDRYS 239
Query: 234 ESIDFWRNVYGIDMSAMMPLAKQCAFEEPSVETITGENVLTWPHVVKHVDCYTIQIHELE 293
SIDFWRNVYGIDMSAMM LAKQCAFEEPSVE+I+GENVLTWP VVKH+DC TI+I EL+
Sbjct: 240 HSIDFWRNVYGIDMSAMMQLAKQCAFEEPSVESISGENVLTWPEVVKHIDCKTIKIQELD 299
Query: 294 SIATTFKFKSMMRAPLHGFAFWFDVEFSTPAISPANNHIPPVVVGSSNNHPMDG-CQKKK 352
S+ +KF SMMRAP+HGFAFWFDVEFS PA SPA N + S++ G +KK
Sbjct: 300 SVTARYKFNSMMRAPMHGFAFWFDVEFSGPASSPAKNTSETSIASGSSSISPSGEVNQKK 359
Query: 353 RANPNEALVLSTAPEDPPTHWQQTMIYFYDPIEVEQDQLIEGSVVLSQSKENARFMNIHL 412
R NP++ALVLST+PE PPTHWQQT++YFYDPI+VEQDQ+IEGSV LSQSKEN RFMNIHL
Sbjct: 360 RTNPSDALVLSTSPESPPTHWQQTIVYFYDPIDVEQDQVIEGSVTLSQSKENKRFMNIHL 419
Query: 413 EYASGGRSFVKESVMR 428
EY+S GRSFVKESVMR
Sbjct: 420 EYSSAGRSFVKESVMR 435
|
Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and asymmetrical dimethylarginine (aDMA). Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: - |
| >sp|Q75G68|ANM62_ORYSJ Probable protein arginine N-methyltransferase 6.2 OS=Oryza sativa subsp. japonica GN=PRMT6.2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 504 bits (1297), Expect = e-142, Method: Compositional matrix adjust.
Identities = 234/359 (65%), Positives = 292/359 (81%), Gaps = 4/359 (1%)
Query: 70 CTDFDVAYFHSYAHVGIHEEMIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIF 129
CTD+D+AYF +Y+H+G+HEEM+KD VRT TYR AIM +Q I GKVV+DVGCGTG+LSIF
Sbjct: 41 CTDYDMAYFKAYSHIGVHEEMLKDHVRTNTYRNAIMHHQDLISGKVVLDVGCGTGVLSIF 100
Query: 130 CAQAGAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWMGY 189
CA AGA RVYAVDASDIA+QA E+V+ N L+DKVIVLHGR+EDVEI+E+VDVIISEWMGY
Sbjct: 101 CAFAGAARVYAVDASDIALQAMEIVRENELSDKVIVLHGRIEDVEIEEKVDVIISEWMGY 160
Query: 190 MLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSA 249
MLLYESMLGSVI ARD+WLK GGLILPS+A+LY+AP+T+ RY +S+ FW++VYGI MS+
Sbjct: 161 MLLYESMLGSVIFARDKWLKPGGLILPSHASLYLAPITNSHRYQDSVYFWQDVYGIKMSS 220
Query: 250 MMPLAKQCAFEEPSVETITGENVLTWPHVVKHVDCYTIQIHELESIATTFKFKSMMRAPL 309
MMPLAKQCAF EPSVETI+GENVLTWP VV VDCYTIQ ELE+I TF + SM++APL
Sbjct: 221 MMPLAKQCAFMEPSVETISGENVLTWPSVVAQVDCYTIQAPELETITATFNYTSMLQAPL 280
Query: 310 HGFAFWFDVEFSTPAISPANNHIPPVVVGSSNNHPMDGCQKKKRANPNEALVLSTAPEDP 369
HGFAFWFDVEF+ P + + G++ D K+ + +VLSTAPED
Sbjct: 281 HGFAFWFDVEFNGPVRQRSKKQANQCLDGNTQ----DASPSNKKKKADAPIVLSTAPEDA 336
Query: 370 PTHWQQTMIYFYDPIEVEQDQLIEGSVVLSQSKENARFMNIHLEYASGGRSFVKESVMR 428
PTHWQQT++Y ++PIE+++DQ IEGSV +SQS+++ARF+NI L+Y + + +VKESVM+
Sbjct: 337 PTHWQQTLLYLFEPIELKKDQNIEGSVTISQSQQHARFLNICLKYFTRDQWYVKESVMK 395
|
Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and asymmetrical dimethylarginine (aDMA). Oryza sativa subsp. japonica (taxid: 39947) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|A2Z8S0|ANM62_ORYSI Probable protein arginine N-methyltransferase 6.2 OS=Oryza sativa subsp. indica GN=PRMT6.2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 504 bits (1297), Expect = e-142, Method: Compositional matrix adjust.
Identities = 234/359 (65%), Positives = 292/359 (81%), Gaps = 4/359 (1%)
Query: 70 CTDFDVAYFHSYAHVGIHEEMIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIF 129
CTD+D+AYF +Y+H+G+HEEM+KD VRT TYR AIM +Q I GKVV+DVGCGTG+LSIF
Sbjct: 41 CTDYDMAYFKAYSHIGVHEEMLKDHVRTNTYRNAIMHHQDLISGKVVLDVGCGTGVLSIF 100
Query: 130 CAQAGAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWMGY 189
CA AGA RVYAVDASDIA+QA E+V+ N L+DKVIVLHGR+EDVEI+E+VDVIISEWMGY
Sbjct: 101 CAFAGAARVYAVDASDIALQAMEIVRENELSDKVIVLHGRIEDVEIEEKVDVIISEWMGY 160
Query: 190 MLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSA 249
MLLYESMLGSVI ARD+WLK GGLILPS+A+LY+AP+T+ RY +S+ FW++VYGI MS+
Sbjct: 161 MLLYESMLGSVIFARDKWLKPGGLILPSHASLYLAPITNSHRYQDSVYFWQDVYGIKMSS 220
Query: 250 MMPLAKQCAFEEPSVETITGENVLTWPHVVKHVDCYTIQIHELESIATTFKFKSMMRAPL 309
MMPLAKQCAF EPSVETI+GENVLTWP VV VDCYTIQ ELE+I TF + SM++APL
Sbjct: 221 MMPLAKQCAFMEPSVETISGENVLTWPSVVAQVDCYTIQAPELETITATFNYTSMLQAPL 280
Query: 310 HGFAFWFDVEFSTPAISPANNHIPPVVVGSSNNHPMDGCQKKKRANPNEALVLSTAPEDP 369
HGFAFWFDVEF+ P + + G++ D K+ + +VLSTAPED
Sbjct: 281 HGFAFWFDVEFNGPVRQRSKKQANQCLDGNTQ----DASPSNKKKKADAPIVLSTAPEDA 336
Query: 370 PTHWQQTMIYFYDPIEVEQDQLIEGSVVLSQSKENARFMNIHLEYASGGRSFVKESVMR 428
PTHWQQT++Y ++PIE+++DQ IEGSV +SQS+++ARF+NI L+Y + + +VKESVM+
Sbjct: 337 PTHWQQTLLYLFEPIELKKDQNIEGSVTISQSQQHARFLNICLKYFTRDQWYVKESVMK 395
|
Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and asymmetrical dimethylarginine (aDMA). Oryza sativa subsp. indica (taxid: 39946) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q7XKC0|ANM61_ORYSJ Probable protein arginine N-methyltransferase 6.1 OS=Oryza sativa subsp. japonica GN=PRMT6.1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 489 bits (1259), Expect = e-137, Method: Compositional matrix adjust.
Identities = 236/400 (59%), Positives = 300/400 (75%), Gaps = 14/400 (3%)
Query: 29 LTSHKDRARRGGRRSRDSLRASEHQQQQQQQQQNDRKPATPCTDFDVAYFHSYAHVGIHE 88
L H ARR R S S A+ P + D YF SY+H+GIHE
Sbjct: 6 LNGHSPLARRCPRLSAASPPATGDSDAAAAAAD------APLAEHDRIYFQSYSHIGIHE 59
Query: 89 EMIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAV 148
MIKDRVRT+ YR+AIM +Q FIEGKVV+DVGCGTGILS+FCA+AGAK VYAV+AS++A
Sbjct: 60 AMIKDRVRTDAYRSAIMHHQKFIEGKVVMDVGCGTGILSVFCARAGAKCVYAVEASEMAT 119
Query: 149 QANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWMGYMLLYESMLGSVITARDRWL 208
QA E+VKANNL DKV+V+HGRVEDVE++++VDVIISEWMGYMLLYESML SV+ ARD+WL
Sbjct: 120 QAREIVKANNLDDKVVVVHGRVEDVEVEDKVDVIISEWMGYMLLYESMLPSVLFARDKWL 179
Query: 209 KRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAMMPLAKQCAFEEPSVETIT 268
K GGLILPS+ATL+MAP+T+ +RY S+DFW +VYGI+MSA++PLAK+ EEPS+E I
Sbjct: 180 KPGGLILPSHATLFMAPITNSERYEGSVDFWSDVYGINMSALVPLAKKFTSEEPSIEIIG 239
Query: 269 GENVLTWPHVVKHVDCYTIQIHELESIATTFKFKSMMRAPLHGFAFWFDVEFSTPAISPA 328
GENVL+WP VVKH+DCYT + EL+S T +K SMM AP+HGF WF+VEF+ P+ +P
Sbjct: 240 GENVLSWPFVVKHIDCYTFKAEELKSFTTKYKVSSMMLAPIHGFGLWFEVEFNGPS-NPT 298
Query: 329 NNHIPPVVVGSSNNHPMDGCQKKKRANPNEALVLSTAPEDPPTHWQQTMIYFYDPIEVEQ 388
+ S+ +P+D +KK+R + +VLSTAPED PTHW QT++YF DPIEV+Q
Sbjct: 299 DK-------SPSDLNPLDVIRKKRRRGSEDPVVLSTAPEDEPTHWHQTILYFPDPIEVKQ 351
Query: 389 DQLIEGSVVLSQSKENARFMNIHLEYASGGRSFVKESVMR 428
DQ+IEGSV +SQS+EN RF+NI L+ +GG++ VK+ MR
Sbjct: 352 DQIIEGSVKVSQSEENPRFLNIQLDCTTGGQTLVKDYAMR 391
|
Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and asymmetrical dimethylarginine (aDMA). Oryza sativa subsp. japonica (taxid: 39947) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|A2XYY8|ANM61_ORYSI Probable protein arginine N-methyltransferase 6.1 OS=Oryza sativa subsp. indica GN=PRMT6.1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 475 bits (1223), Expect = e-133, Method: Compositional matrix adjust.
Identities = 230/385 (59%), Positives = 290/385 (75%), Gaps = 14/385 (3%)
Query: 29 LTSHKDRARRGGRRSRDSLRASEHQQQQQQQQQNDRKPATPCTDFDVAYFHSYAHVGIHE 88
L H ARR R S S A+ P + D YF SY+H+GIHE
Sbjct: 6 LNGHSPLARRRPRLSAASPPATGDSDAAAAAAD------APLAEHDRIYFQSYSHIGIHE 59
Query: 89 EMIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAV 148
MIKDRVRT+ YR+AIM +Q FIEGKVV+DVGCGTGILS+FCA+AGAK VYAV+AS++A
Sbjct: 60 AMIKDRVRTDAYRSAIMHHQKFIEGKVVMDVGCGTGILSVFCARAGAKCVYAVEASEMAT 119
Query: 149 QANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWMGYMLLYESMLGSVITARDRWL 208
QA E+VKANNL DKV+V+HGRVEDVE++++VDVIISEWMGYMLLYESML SV+ ARD+WL
Sbjct: 120 QAREIVKANNLDDKVVVVHGRVEDVEVEDKVDVIISEWMGYMLLYESMLPSVLFARDKWL 179
Query: 209 KRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAMMPLAKQCAFEEPSVETIT 268
K GGLILPS+ATL+MAP+T+ +RY S+DFW +VYGI+MSA++PLAK+ EEPS+E I
Sbjct: 180 KPGGLILPSHATLFMAPITNSERYEGSVDFWSDVYGINMSALVPLAKKFTSEEPSIEIIG 239
Query: 269 GENVLTWPHVVKHVDCYTIQIHELESIATTFKFKSMMRAPLHGFAFWFDVEFSTPAISPA 328
GENVL+WP VVKH+DCYT + EL+SI T +K SMM AP+HGF WF+VEF+ P+ +P
Sbjct: 240 GENVLSWPFVVKHIDCYTFKAEELKSITTKYKVSSMMLAPIHGFGLWFEVEFNGPS-NPT 298
Query: 329 NNHIPPVVVGSSNNHPMDGCQKKKRANPNEALVLSTAPEDPPTHWQQTMIYFYDPIEVEQ 388
+ S+ +P+D + K+R + +VLSTAPED PTHW QT++YF DPIEV+Q
Sbjct: 299 DK-------SPSDLNPLDVIRTKRRRGSEDPVVLSTAPEDEPTHWHQTILYFPDPIEVKQ 351
Query: 389 DQLIEGSVVLSQSKENARFMNIHLE 413
DQ+IEGSV +SQS+EN RF+NI L+
Sbjct: 352 DQIIEGSVKVSQSEENPRFLNIQLD 376
|
Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and asymmetrical dimethylarginine (aDMA). Oryza sativa subsp. indica (taxid: 39946) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q6NWG4|ANM6_DANRE Protein arginine N-methyltransferase 6 OS=Danio rerio GN=prmt6 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 286 bits (732), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 155/349 (44%), Positives = 210/349 (60%), Gaps = 40/349 (11%)
Query: 74 DVAYFHSYAHVGIHEEMIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA 133
D YF SY+ V IHEEMI D VRT TYR I +N IEGKVV+DVG GTG+LS+FCAQA
Sbjct: 17 DYMYFDSYSDVTIHEEMIADTVRTNTYRMGIFKNSKSIEGKVVLDVGAGTGVLSLFCAQA 76
Query: 134 GAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWMGYMLLY 193
GA++VYAV+AS IA QA ++VK N + D++ V+ +E +E+ E+VDVI+SEWMGY LL+
Sbjct: 77 GARKVYAVEASSIADQAVKIVKLNQMEDRIEVIKSTLETIELAEKVDVIVSEWMGYALLH 136
Query: 194 ESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSES-IDFWRNV---YGIDMSA 249
ESML SVI ARD+WLK GGLILPS A LY+AP+ D E +DFW V YG+DMS
Sbjct: 137 ESMLNSVIFARDKWLKPGGLILPSRADLYIAPIN--DVVVEGRLDFWSTVKGQYGVDMSC 194
Query: 250 MMPLAKQCAF-EEPSVETITGENVLTWPHVVKHVDCYTIQIHELESIATTFKFKSMMRAP 308
M A++C ++ +V +T E+VL+ P +D T+ + +L + +F +
Sbjct: 195 MTDFARKCIMNKDITVNPVTVEDVLSHPCKFAELDLNTVTLEQLRDVNGSFSCVCFGSSS 254
Query: 309 LHGFAFWFDVEFSTPAISPANNHIPPVVVGSSNNHPMDGCQKKKRANPNEALVLSTAPED 368
+H F WF V F PA +ALVLST+P
Sbjct: 255 IHAFCVWFTVTF------PAEE---------------------------KALVLSTSPFK 281
Query: 369 PPTHWQQTMIYFYDPIEVEQDQLIEGSVVLSQSKENARFMNIHLEYASG 417
THW+Q ++Y D ++V QD +EG + L S+EN+R + I ++Y G
Sbjct: 282 AETHWKQAVLYLDDAVDVMQDTKVEGEISLYPSEENSRHICIRVDYVIG 330
|
Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and asymmetrical dimethylarginine (aDMA), with a strong preference for the formation of aDMA. Preferentially methylates arginyl residues present in a glycine and arginine-rich domain and displays preference for monomethylated substrates. Specifically mediates the asymmetric dimethylation of histone H3 'Arg-2' to form H3R2me2a. H3R2me2a represents a specific tag for epigenetic transcriptional repression and is mutually exclusive with methylation on histone H3 'Lys-4' (H3K4me2 and H3K4me3). It thereby acts as a transcription corepressor of various genes such as hoxa2. Also methylates histone H2A and H4 'Arg-3' (H2AR3me and H4R3me, respectively). Acts as a regulator of DNA base excision during DNA repair by mediating the methylation of DNA polymerase beta (polb), leading to stimulate the polymerase activity by enhancing DNA binding and processivity. Methylates hmga1. Danio rerio (taxid: 7955) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 EC: 5 |
| >sp|Q6NZB1|ANM6_MOUSE Protein arginine N-methyltransferase 6 OS=Mus musculus GN=Prmt6 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 280 bits (717), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 159/361 (44%), Positives = 210/361 (58%), Gaps = 41/361 (11%)
Query: 65 KPATPCTDFDVAYFHSYAHVGIHEEMIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTG 124
+P ++ D Y+ Y+ V +HEEMI D+VRTE YR I++N + + GK V+DVG GTG
Sbjct: 38 RPRRTKSERDQLYYECYSDVSVHEEMIADQVRTEAYRLGILKNWAALRGKTVLDVGAGTG 97
Query: 125 ILSIFCAQAGAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIIS 184
ILSIFCAQAGA+RVYAV+AS I QA EVV+ N L D+V VL G VE VE+ E VD I+S
Sbjct: 98 ILSIFCAQAGARRVYAVEASAIWQQAREVVRLNGLEDRVHVLPGPVETVELPERVDAIVS 157
Query: 185 EWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSE-SIDFWRNV- 242
EWMGY LL+ESML SV+ AR +WLK GGL+LP+ A L++AP++ D+ E + FW V
Sbjct: 158 EWMGYGLLHESMLSSVLHARTKWLKEGGLLLPASAELFVAPIS--DQMLEWRLGFWSQVK 215
Query: 243 --YGIDMSAMMPLAKQCAF--EEPSVETITGENVLTWPHVVKHVDCYTIQI-HELES-IA 296
YG+DMS M A +C E V+ ++GE+VL P ++ + ELE+ +
Sbjct: 216 QHYGVDMSCMESFATRCLMGHSEIVVQDLSGEDVLARPQRFAQLELARAGLEQELEAGVG 275
Query: 297 TTFKFKSMMRAPLHGFAFWFDVEFSTPAISPANNHIPPVVVGSSNNHPMDGCQKKKRANP 356
F+ APLHGFA WF V F G + P
Sbjct: 276 GRFRCSCYGSAPLHGFAVWFQVTFP----------------GGDSEKP------------ 307
Query: 357 NEALVLSTAPEDPPTHWQQTMIYFYDPIEVEQDQLIEGSVVLSQSKENARFMNIHLEYAS 416
LVLST+P P THW+Q ++Y +P+ VEQD I G + L S +N R + I L Y
Sbjct: 308 ---LVLSTSPFHPATHWKQALLYLNEPVPVEQDTDISGEITLLPSPDNPRRLRILLRYKV 364
Query: 417 G 417
G
Sbjct: 365 G 365
|
Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and asymmetrical dimethylarginine (aDMA), with a strong preference for the formation of aDMA. Preferentially methylates arginyl residues present in a glycine and arginine-rich domain and displays preference for monomethylated substrates. Specifically mediates the asymmetric dimethylation of histone H3 'Arg-2' to form H3R2me2a. H3R2me2a represents a specific tag for epigenetic transcriptional repression and is mutually exclusive with methylation on histone H3 'Lys-4' (H3K4me2 and H3K4me3). It thereby acts as a transcription corepressor of various genes such as HOXA2. Also methylates histone H2A and H4 'Arg-3' (H2AR3me and H4R3me, respectively). Acts as a regulator of DNA base excision during DNA repair by mediating the methylation of DNA polymerase beta (POLB), leading to stimulate the polymerase activity by enhancing DNA binding and processivity. Methylates HMGA1. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 EC: 5 |
| >sp|B0JYW5|ANM6_XENTR Protein arginine N-methyltransferase 6 OS=Xenopus tropicalis GN=prmt6 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 280 bits (716), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 153/353 (43%), Positives = 210/353 (59%), Gaps = 41/353 (11%)
Query: 71 TDFDVAYFHSYAHVGIHEEMIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFC 130
T+ D YF Y+ V +HEEMI D VRT Y+ A+++N S ++GK V+DVG GTGILS+F
Sbjct: 12 TEQDCEYFQCYSDVSVHEEMIADTVRTNAYKLALLRNHSSLQGKTVLDVGAGTGILSVFS 71
Query: 131 AQAGAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWMGYM 190
QAGA+ VYAV+AS ++ A +VVK+N++ +KV VL+ VE EI E+VD I+SEWMGY
Sbjct: 72 VQAGAQAVYAVEASSMSQLACQVVKSNDMENKVKVLNSSVESAEIPEQVDAIVSEWMGYA 131
Query: 191 LLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSES-IDFW---RNVYGID 246
L+YESML SVI ARD+WLK GGLILPS A L++APV D ES +DFW + +YG+D
Sbjct: 132 LMYESMLPSVIYARDKWLKPGGLILPSCADLFIAPVN--DLIVESRLDFWSEVKGMYGVD 189
Query: 247 MSAMMPLAKQCAF-EEPSVETITGENVLTWPHVVKHVDCYTIQIHELESIATTFKFKSMM 305
MS M A+ C +E +V ++ E+VL++P +D E+ ++ +F+F
Sbjct: 190 MSCMQSFARSCIMNKEMAVNLVSPEDVLSFPVRFASLDLNVCTQEEVRNLHGSFQFSCFG 249
Query: 306 RAPLHGFAFWFDVEFSTPAISPANNHIPPVVVGSSNNHPMDGCQKKKRANPNEALVLSTA 365
+ LHGFA WF V F P N + LST+
Sbjct: 250 SSLLHGFAVWFSVTF------PGENSV----------------------------TLSTS 275
Query: 366 PEDPPTHWQQTMIYFYDPIEVEQDQLIEGSVVLSQSKENARFMNIHLEYASGG 418
P THW+QT++Y + ++VEQD I G V LS S N R + + L Y+ GG
Sbjct: 276 PYGEETHWKQTLLYLDEEVQVEQDTEITGDVTLSPSDINPRHLRVLLNYSIGG 328
|
Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and asymmetrical dimethylarginine (aDMA), with a strong preference for the formation of aDMA. Preferentially methylates arginyl residues present in a glycine and arginine-rich domain and displays preference for monomethylated substrates. Specifically mediates the asymmetric dimethylation of histone H3 'Arg-2' to form H3R2me2a. H3R2me2a represents a specific tag for epigenetic transcriptional repression and is mutually exclusive with methylation on histone H3 'Lys-4' (H3K4me2 and H3K4me3). It thereby acts as a transcription corepressor of various genes such as hoxa2. Also methylates histone H2A and H4 'Arg-3' (H2AR3me and H4R3me, respectively). Acts as a regulator of DNA base excision during DNA repair by mediating the methylation of DNA polymerase beta (polb), leading to stimulate the polymerase activity by enhancing DNA binding and processivity. Methylates hmga1. Xenopus tropicalis (taxid: 8364) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 EC: 5 |
| >sp|Q96LA8|ANM6_HUMAN Protein arginine N-methyltransferase 6 OS=Homo sapiens GN=PRMT6 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 280 bits (716), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 155/361 (42%), Positives = 212/361 (58%), Gaps = 41/361 (11%)
Query: 65 KPATPCTDFDVAYFHSYAHVGIHEEMIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTG 124
+P + D Y+ Y+ V +HEEMI DRVRT+ YR I++N + + GK V+DVG GTG
Sbjct: 35 RPRRTKRERDQLYYECYSDVSVHEEMIADRVRTDAYRLGILRNWAALRGKTVLDVGAGTG 94
Query: 125 ILSIFCAQAGAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIIS 184
ILSIFCAQAGA+RVYAV+AS I QA EVV+ N L D+V VL G VE VE+ E+VD I+S
Sbjct: 95 ILSIFCAQAGARRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVS 154
Query: 185 EWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSE-SIDFWRNV- 242
EWMGY LL+ESML SV+ AR +WLK GGL+LP+ A L++AP++ D+ E + FW V
Sbjct: 155 EWMGYGLLHESMLSSVLHARTKWLKEGGLLLPASAELFIAPIS--DQMLEWRLGFWSQVK 212
Query: 243 --YGIDMSAMMPLAKQCAF--EEPSVETITGENVLTWPHVVKHVDCYTIQI-HELES-IA 296
YG+DMS + A +C E V+ ++GE+VL P ++ + ELE+ +
Sbjct: 213 QHYGVDMSCLEGFATRCLMGHSEIVVQGLSGEDVLARPQRFAQLELSRAGLEQELEAGVG 272
Query: 297 TTFKFKSMMRAPLHGFAFWFDVEFSTPAISPANNHIPPVVVGSSNNHPMDGCQKKKRANP 356
F+ AP+HGFA WF V F G + P
Sbjct: 273 GRFRCSCYGSAPMHGFAIWFQVTFP----------------GGESEKP------------ 304
Query: 357 NEALVLSTAPEDPPTHWQQTMIYFYDPIEVEQDQLIEGSVVLSQSKENARFMNIHLEYAS 416
LVLST+P P THW+Q ++Y +P++VEQD + G + L S++N R + + L Y
Sbjct: 305 ---LVLSTSPFHPATHWKQALLYLNEPVQVEQDTDVSGEITLLPSRDNPRRLRVLLRYKV 361
Query: 417 G 417
G
Sbjct: 362 G 362
|
Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and asymmetrical dimethylarginine (aDMA), with a strong preference for the formation of aDMA. Preferentially methylates arginyl residues present in a glycine and arginine-rich domain and displays preference for monomethylated substrates. Specifically mediates the asymmetric dimethylation of histone H3 'Arg-2' to form H3R2me2a. H3R2me2a represents a specific tag for epigenetic transcriptional repression and is mutually exclusive with methylation on histone H3 'Lys-4' (H3K4me2 and H3K4me3). It thereby acts as a transcription corepressor of various genes such as HOXA2. Also methylates histone H2A and H4 'Arg-3' (H2AR3me and H4R3me, respectively). Acts as a regulator of DNA base excision during DNA repair by mediating the methylation of DNA polymerase beta (POLB), leading to stimulate the polymerase activity by enhancing DNA binding and processivity. Methylates HMGA1. May play a role in innate immunity against HIV-1 in case of infection by methylating and impairing the function of various HIV-1 proteins such as Tat, Rev and Nucleocapsid protein p7 (NC). Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 EC: 5 |
| >sp|Q5E9L5|ANM6_BOVIN Protein arginine N-methyltransferase 6 OS=Bos taurus GN=PRMT6 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 280 bits (715), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 153/352 (43%), Positives = 211/352 (59%), Gaps = 41/352 (11%)
Query: 74 DVAYFHSYAHVGIHEEMIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA 133
D Y+ Y+ V +HEEMI DRVRT+ YR I++N + + GK V+DVG GTGILSIFCAQA
Sbjct: 44 DQLYYQCYSDVSVHEEMIADRVRTDAYRLGILRNWAALRGKTVLDVGAGTGILSIFCAQA 103
Query: 134 GAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWMGYMLLY 193
GA+RVYAV+ASDI QA EVV+ N L D+V VL G VE VE+ E+VD I+SEWMG LL+
Sbjct: 104 GARRVYAVEASDIWQQAREVVRLNGLEDRVHVLPGPVETVELPEQVDAIVSEWMGCGLLH 163
Query: 194 ESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSE-SIDFW---RNVYGIDMSA 249
ESML SV+ AR +WLK GGL+LP+ A L++AP++ D+ E + FW + +YG+DMS
Sbjct: 164 ESMLSSVLHARTKWLKEGGLLLPASAELFVAPIS--DQMLELRLSFWSQMKQLYGVDMSC 221
Query: 250 MMPLAKQCAF--EEPSVETITGENVLTWPHVVKHVDCYTIQI-HELES-IATTFKFKSMM 305
+ A +C E V+ ++GE+VL P ++ + ELE+ + F+F
Sbjct: 222 LESFATRCLMGHSEIVVQGLSGEDVLARPQCFARLELARAGLEQELEAGVGGRFRFSCYG 281
Query: 306 RAPLHGFAFWFDVEFSTPAISPANNHIPPVVVGSSNNHPMDGCQKKKRANPNEALVLSTA 365
AP+HGFA WF V F P + PV VLST+
Sbjct: 282 SAPMHGFAIWFQVTF------PGGDSEKPV-------------------------VLSTS 310
Query: 366 PEDPPTHWQQTMIYFYDPIEVEQDQLIEGSVVLSQSKENARFMNIHLEYASG 417
P P THW+Q ++Y +P++VEQD + G + L S+++ R + + L Y G
Sbjct: 311 PFHPVTHWKQALLYLNEPVQVEQDTDVSGEITLLPSQDHHRHLRVLLRYKVG 362
|
Arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and asymmetrical dimethylarginine (aDMA), with a strong preference for the formation of aDMA. Preferentially methylates arginyl residues present in a glycine and arginine-rich domain and displays preference for monomethylated substrates. Specifically mediates the asymmetric dimethylation of histone H3 'Arg-2' to form H3R2me2a. H3R2me2a represents a specific tag for epigenetic transcriptional repression and is mutually exclusive with methylation on histone H3 'Lys-4' (H3K4me2 and H3K4me3). It thereby acts as a transcription corepressor of various genes such as HOXA2. Also methylates histone H2A and H4 'Arg-3' (H2AR3me and H4R3me, respectively). Acts as a regulator of DNA base excision during DNA repair by mediating the methylation of DNA polymerase beta (POLB), leading to stimulate the polymerase activity by enhancing DNA binding and processivity. Methylates HMGA1. Bos taurus (taxid: 9913) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 EC: 5 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 428 | ||||||
| 255544137 | 406 | protein arginine n-methyltransferase, pu | 0.948 | 1.0 | 0.796 | 0.0 | |
| 356576535 | 406 | PREDICTED: probable protein arginine N-m | 0.948 | 1.0 | 0.740 | 0.0 | |
| 30685597 | 435 | protein arginine N-methyltransferase 6 [ | 0.997 | 0.981 | 0.727 | 0.0 | |
| 225463764 | 411 | PREDICTED: probable protein arginine N-m | 0.841 | 0.875 | 0.819 | 1e-178 | |
| 297742734 | 414 | unnamed protein product [Vitis vinifera] | 0.841 | 0.869 | 0.819 | 1e-178 | |
| 297834940 | 435 | arginine N-methyltransferase family prot | 0.997 | 0.981 | 0.720 | 1e-178 | |
| 449464964 | 415 | PREDICTED: probable protein arginine N-m | 0.969 | 1.0 | 0.717 | 1e-175 | |
| 145332651 | 413 | protein arginine N-methyltransferase 6 [ | 0.946 | 0.980 | 0.683 | 1e-166 | |
| 356577726 | 394 | PREDICTED: probable protein arginine N-m | 0.820 | 0.890 | 0.745 | 1e-158 | |
| 9293956 | 399 | protein arginine N-methyltransferase-lik | 0.913 | 0.979 | 0.667 | 1e-156 |
| >gi|255544137|ref|XP_002513131.1| protein arginine n-methyltransferase, putative [Ricinus communis] gi|223548142|gb|EEF49634.1| protein arginine n-methyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 695 bits (1794), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/428 (79%), Positives = 371/428 (86%), Gaps = 22/428 (5%)
Query: 1 MYSSIGYSNGHHHHHQPHQQERERMGGGLTSHKDRARRGGRRSRDSLRASEHQQQQQQQQ 60
MYS+ G +NG+H+ Q+ER R G RGG RSR R S QQQQ++ +
Sbjct: 1 MYSTSGENNGYHNQQHKSQRERVRRGA----------RGGSRSRYGFRVSAEQQQQEESE 50
Query: 61 QNDRKPATPCTDFDVAYFHSYAHVGIHEEMIKDRVRTETYRAAIMQNQSFIEGKVVVDVG 120
Q TPCTDFD+AYFHSYAHVGIHEEMIKDRVRTETYR+AIMQ+QS+IEGKVVVDVG
Sbjct: 51 QK----VTPCTDFDMAYFHSYAHVGIHEEMIKDRVRTETYRSAIMQHQSYIEGKVVVDVG 106
Query: 121 CGTGILSIFCAQAGAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVD 180
CGTGILSIFCAQAGAKRVYAVDASDIAVQANEVVKANNL+DK+IVLHGRVEDVEIDEEVD
Sbjct: 107 CGTGILSIFCAQAGAKRVYAVDASDIAVQANEVVKANNLSDKIIVLHGRVEDVEIDEEVD 166
Query: 181 VIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWR 240
VIISEWMGYMLLYESMLGSVITARDRWLKRGG+ILPS ATLYMAPVTHPDRY+ESIDFWR
Sbjct: 167 VIISEWMGYMLLYESMLGSVITARDRWLKRGGIILPSTATLYMAPVTHPDRYTESIDFWR 226
Query: 241 NVYGIDMSAMMPLAKQCAFEEPSVETITGENVLTWPHVVKHVDCYTIQIHELESIATTFK 300
NVYGIDMSAMMPLAKQCAFEEPSVETI+GENVLTWPH+VKHVDCY IQIHELES++T +K
Sbjct: 227 NVYGIDMSAMMPLAKQCAFEEPSVETISGENVLTWPHMVKHVDCYMIQIHELESVSTRYK 286
Query: 301 FKSMMRAPLHGFAFWFDVEFSTPAISPANNHIPPVVVGSSNNHPMDGCQKKKRANPNEAL 360
F+SMM+APLHGFAFWFDVEF PA SP N +NN P+DG Q KKR NPN++L
Sbjct: 287 FQSMMKAPLHGFAFWFDVEFCGPATSPINT--------LANNPPVDGNQSKKRTNPNDSL 338
Query: 361 VLSTAPEDPPTHWQQTMIYFYDPIEVEQDQLIEGSVVLSQSKENARFMNIHLEYASGGRS 420
VLSTAPEDPPTHWQQT+IYFYDPIEVEQDQLIEGSV+LSQSKEN RFMNIHLEY SGGRS
Sbjct: 339 VLSTAPEDPPTHWQQTVIYFYDPIEVEQDQLIEGSVILSQSKENRRFMNIHLEYTSGGRS 398
Query: 421 FVKESVMR 428
FVKE+VMR
Sbjct: 399 FVKETVMR 406
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356576535|ref|XP_003556386.1| PREDICTED: probable protein arginine N-methyltransferase 6-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 650 bits (1678), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/428 (74%), Positives = 350/428 (81%), Gaps = 22/428 (5%)
Query: 1 MYSSIGYSNGHHHHHQPHQQERERMGGGLTSHKDRARRGGRRSRDSLRASEHQQQQQQQQ 60
M+ +SNG+ H SH++R RRG RSR S + H + Q
Sbjct: 1 MFPQENHSNGYQHQQG-------------YSHRERVRRGTCRSRASTSSHSHSVRVYDQ- 46
Query: 61 QNDRKPATPCTDFDVAYFHSYAHVGIHEEMIKDRVRTETYRAAIMQNQSFIEGKVVVDVG 120
P PCTDFDVAYFHSYAH+GIH+EMIKDRVRT+TYR AIMQ+QSFI GKVVVDVG
Sbjct: 47 -----PRPPCTDFDVAYFHSYAHLGIHQEMIKDRVRTDTYRDAIMQHQSFIAGKVVVDVG 101
Query: 121 CGTGILSIFCAQAGAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVD 180
CGTGILSIFCAQAGAKRVYA+DASDIA+QANEVVKANNL+D V+VLHGRVEDVEI+EEVD
Sbjct: 102 CGTGILSIFCAQAGAKRVYAIDASDIALQANEVVKANNLSDVVVVLHGRVEDVEINEEVD 161
Query: 181 VIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWR 240
VIISEWMGYMLLYESMLGSVI ARDRWLK GGLILPS +TLYMAPVTH DRYS+S+DFWR
Sbjct: 162 VIISEWMGYMLLYESMLGSVINARDRWLKPGGLILPSSSTLYMAPVTHTDRYSDSVDFWR 221
Query: 241 NVYGIDMSAMMPLAKQCAFEEPSVETITGENVLTWPHVVKHVDCYTIQIHELESIATTFK 300
NVYGIDMSAM+ LAKQCAFEEPSVETITGENVLTWPHVVK++D Y++ I ELES+ FK
Sbjct: 222 NVYGIDMSAMVSLAKQCAFEEPSVETITGENVLTWPHVVKYIDSYSVTIQELESVTAKFK 281
Query: 301 FKSMMRAPLHGFAFWFDVEFSTPAISPANNHIPPVVVGSSNNHPMDGCQKKKRANPNEAL 360
F SMMRAPLHGFAFWFDVEF+ AI N H V +NH M+G Q+K+R NPNEAL
Sbjct: 282 FNSMMRAPLHGFAFWFDVEFNGHAIPSTNYHSTTSFV---DNHQMNGSQRKRRTNPNEAL 338
Query: 361 VLSTAPEDPPTHWQQTMIYFYDPIEVEQDQLIEGSVVLSQSKENARFMNIHLEYASGGRS 420
VLSTAPEDPPTHWQQT+IYFYDPIE+EQDQLIEG V LSQSKENARFMNIHLEY SGGRS
Sbjct: 339 VLSTAPEDPPTHWQQTLIYFYDPIELEQDQLIEGLVTLSQSKENARFMNIHLEYTSGGRS 398
Query: 421 FVKESVMR 428
+VKESVMR
Sbjct: 399 YVKESVMR 406
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30685597|ref|NP_188637.2| protein arginine N-methyltransferase 6 [Arabidopsis thaliana] gi|122165742|sp|Q08A71.1|ANM6_ARATH RecName: Full=Probable protein arginine N-methyltransferase 6 gi|115311473|gb|ABI93917.1| At3g20020 [Arabidopsis thaliana] gi|332642799|gb|AEE76320.1| protein arginine N-methyltransferase 6 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 639 bits (1648), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/436 (72%), Positives = 355/436 (81%), Gaps = 9/436 (2%)
Query: 1 MYSSIGYSNGHHHHHQPHQQERERMGGGLTSH---KDRARRGGRRSR----DSLRASEHQ 53
M S +SNG H H + ++ G L+S K R+ G R R + LR S+
Sbjct: 1 MQSGGDFSNGFHGDHHRELELEDKQGPSLSSFGRAKKRSHAGARDPRGGLANVLRVSDQL 60
Query: 54 QQQQQQQQNDRKPATPCTDFDVAYFHSYAHVGIHEEMIKDRVRTETYRAAIMQNQSFIEG 113
+ + + ++ P PCTDFDVAYFHSYAHVGIHEEMIKDR RTETYR AIMQ+QS IEG
Sbjct: 61 GEHKSLETSESSPP-PCTDFDVAYFHSYAHVGIHEEMIKDRARTETYREAIMQHQSLIEG 119
Query: 114 KVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDV 173
KVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQA EVVKAN L+DKVIVLHGRVEDV
Sbjct: 120 KVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQAKEVVKANGLSDKVIVLHGRVEDV 179
Query: 174 EIDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYS 233
EIDEEVDVIISEWMGYMLLYESMLGSVITARDRWLK GGLILPS+ATLYMAP++HPDRYS
Sbjct: 180 EIDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKPGGLILPSHATLYMAPISHPDRYS 239
Query: 234 ESIDFWRNVYGIDMSAMMPLAKQCAFEEPSVETITGENVLTWPHVVKHVDCYTIQIHELE 293
SIDFWRNVYGIDMSAMM LAKQCAFEEPSVE+I+GENVLTWP VVKH+DC TI+I EL+
Sbjct: 240 HSIDFWRNVYGIDMSAMMQLAKQCAFEEPSVESISGENVLTWPEVVKHIDCKTIKIQELD 299
Query: 294 SIATTFKFKSMMRAPLHGFAFWFDVEFSTPAISPANNHIPPVVVGSSNNHPMDG-CQKKK 352
S+ +KF SMMRAP+HGFAFWFDVEFS PA SPA N + S++ G +KK
Sbjct: 300 SVTARYKFNSMMRAPMHGFAFWFDVEFSGPASSPAKNTSETSIASGSSSISPSGEVNQKK 359
Query: 353 RANPNEALVLSTAPEDPPTHWQQTMIYFYDPIEVEQDQLIEGSVVLSQSKENARFMNIHL 412
R NP++ALVLST+PE PPTHWQQT++YFYDPI+VEQDQ+IEGSV LSQSKEN RFMNIHL
Sbjct: 360 RTNPSDALVLSTSPESPPTHWQQTIVYFYDPIDVEQDQVIEGSVTLSQSKENKRFMNIHL 419
Query: 413 EYASGGRSFVKESVMR 428
EY+S GRSFVKESVMR
Sbjct: 420 EYSSAGRSFVKESVMR 435
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225463764|ref|XP_002267286.1| PREDICTED: probable protein arginine N-methyltransferase 6-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 632 bits (1630), Expect = e-178, Method: Compositional matrix adjust.
Identities = 295/360 (81%), Positives = 327/360 (90%)
Query: 69 PCTDFDVAYFHSYAHVGIHEEMIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSI 128
PCTDFD AYF SY+HVGIHEEMIKDRVRTETY+AAI Q+Q+ I GKVVVDVGCGTGILSI
Sbjct: 52 PCTDFDKAYFQSYSHVGIHEEMIKDRVRTETYKAAITQHQNSIAGKVVVDVGCGTGILSI 111
Query: 129 FCAQAGAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWMG 188
FCAQ GAKRVYAVDAS+IA+QA+ VVKANNL+D VIVLHGRVEDVEIDE VDVIISEWMG
Sbjct: 112 FCAQVGAKRVYAVDASEIAIQASAVVKANNLSDTVIVLHGRVEDVEIDEGVDVIISEWMG 171
Query: 189 YMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMS 248
YMLLYESML SVITARDRWLK GGLILPS ATLYMAPVTH DRY +SIDFWRNVYGIDMS
Sbjct: 172 YMLLYESMLESVITARDRWLKPGGLILPSSATLYMAPVTHTDRYRDSIDFWRNVYGIDMS 231
Query: 249 AMMPLAKQCAFEEPSVETITGENVLTWPHVVKHVDCYTIQIHELESIATTFKFKSMMRAP 308
AM+ LAKQCAFEEPSVETI+GENVLTWPHVVK VDCY + I EL+S+AT ++FKSMMRAP
Sbjct: 232 AMLALAKQCAFEEPSVETISGENVLTWPHVVKQVDCYAVTIDELKSVATRYRFKSMMRAP 291
Query: 309 LHGFAFWFDVEFSTPAISPANNHIPPVVVGSSNNHPMDGCQKKKRANPNEALVLSTAPED 368
LHGFAFWFDVEF+ PAI P + P + +GSS+N+P+DG Q+KKR+NPNEALVLSTAPED
Sbjct: 292 LHGFAFWFDVEFNGPAIFPTSTDSPSLFIGSSSNNPVDGSQRKKRSNPNEALVLSTAPED 351
Query: 369 PPTHWQQTMIYFYDPIEVEQDQLIEGSVVLSQSKENARFMNIHLEYASGGRSFVKESVMR 428
PPTHWQQT+IY Y+P+++EQDQLIEGSV LSQSKEN RFMNI LEYA+GGR+FVKESVMR
Sbjct: 352 PPTHWQQTLIYLYEPVDLEQDQLIEGSVTLSQSKENPRFMNIRLEYAAGGRAFVKESVMR 411
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297742734|emb|CBI35368.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 632 bits (1629), Expect = e-178, Method: Compositional matrix adjust.
Identities = 295/360 (81%), Positives = 327/360 (90%)
Query: 69 PCTDFDVAYFHSYAHVGIHEEMIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSI 128
PCTDFD AYF SY+HVGIHEEMIKDRVRTETY+AAI Q+Q+ I GKVVVDVGCGTGILSI
Sbjct: 55 PCTDFDKAYFQSYSHVGIHEEMIKDRVRTETYKAAITQHQNSIAGKVVVDVGCGTGILSI 114
Query: 129 FCAQAGAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWMG 188
FCAQ GAKRVYAVDAS+IA+QA+ VVKANNL+D VIVLHGRVEDVEIDE VDVIISEWMG
Sbjct: 115 FCAQVGAKRVYAVDASEIAIQASAVVKANNLSDTVIVLHGRVEDVEIDEGVDVIISEWMG 174
Query: 189 YMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMS 248
YMLLYESML SVITARDRWLK GGLILPS ATLYMAPVTH DRY +SIDFWRNVYGIDMS
Sbjct: 175 YMLLYESMLESVITARDRWLKPGGLILPSSATLYMAPVTHTDRYRDSIDFWRNVYGIDMS 234
Query: 249 AMMPLAKQCAFEEPSVETITGENVLTWPHVVKHVDCYTIQIHELESIATTFKFKSMMRAP 308
AM+ LAKQCAFEEPSVETI+GENVLTWPHVVK VDCY + I EL+S+AT ++FKSMMRAP
Sbjct: 235 AMLALAKQCAFEEPSVETISGENVLTWPHVVKQVDCYAVTIDELKSVATRYRFKSMMRAP 294
Query: 309 LHGFAFWFDVEFSTPAISPANNHIPPVVVGSSNNHPMDGCQKKKRANPNEALVLSTAPED 368
LHGFAFWFDVEF+ PAI P + P + +GSS+N+P+DG Q+KKR+NPNEALVLSTAPED
Sbjct: 295 LHGFAFWFDVEFNGPAIFPTSTDSPSLFIGSSSNNPVDGSQRKKRSNPNEALVLSTAPED 354
Query: 369 PPTHWQQTMIYFYDPIEVEQDQLIEGSVVLSQSKENARFMNIHLEYASGGRSFVKESVMR 428
PPTHWQQT+IY Y+P+++EQDQLIEGSV LSQSKEN RFMNI LEYA+GGR+FVKESVMR
Sbjct: 355 PPTHWQQTLIYLYEPVDLEQDQLIEGSVTLSQSKENPRFMNIRLEYAAGGRAFVKESVMR 414
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297834940|ref|XP_002885352.1| arginine N-methyltransferase family protein [Arabidopsis lyrata subsp. lyrata] gi|297331192|gb|EFH61611.1| arginine N-methyltransferase family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 630 bits (1625), Expect = e-178, Method: Compositional matrix adjust.
Identities = 314/436 (72%), Positives = 351/436 (80%), Gaps = 9/436 (2%)
Query: 1 MYSSIGYSNGHHHHHQPHQQERERMGGGLTSHKDRARRGGRRSRDS-------LRASEHQ 53
M S +SNG H + ++ GL+S RR +RD LR S+
Sbjct: 1 MQSGGDFSNGFHGDQHRELELEDKQVPGLSSFGRAKRRSHAGARDPRGGLANVLRVSDQL 60
Query: 54 QQQQQQQQNDRKPATPCTDFDVAYFHSYAHVGIHEEMIKDRVRTETYRAAIMQNQSFIEG 113
+Q+ + ++ P PCTDFDVAYFHSYAHVGIHEEMIKDR RTETYR AIMQ+QS I+G
Sbjct: 61 GEQKSLETSESSPP-PCTDFDVAYFHSYAHVGIHEEMIKDRARTETYREAIMQHQSLIQG 119
Query: 114 KVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDV 173
KVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQA EVVKAN L++KVIVLHGRVEDV
Sbjct: 120 KVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQAKEVVKANGLSEKVIVLHGRVEDV 179
Query: 174 EIDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYS 233
EIDEEVDVIISEWMGYMLLYESMLGSVITARDRWLK GGLILPS+ATLYMAPV+HPDRYS
Sbjct: 180 EIDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKPGGLILPSHATLYMAPVSHPDRYS 239
Query: 234 ESIDFWRNVYGIDMSAMMPLAKQCAFEEPSVETITGENVLTWPHVVKHVDCYTIQIHELE 293
SIDFWRNVYGIDMSAMM LAKQCAFEEPSVE+I+GENVLTWP VVKH+DC TI+I EL+
Sbjct: 240 HSIDFWRNVYGIDMSAMMQLAKQCAFEEPSVESISGENVLTWPEVVKHIDCQTIKIQELD 299
Query: 294 SIATTFKFKSMMRAPLHGFAFWFDVEFSTPAISPANNHIPPVVVGSSNNHPMDG-CQKKK 352
S+ +KF SMMRAP+HGFAFWFDVEFS P PA N V S++ G +KK
Sbjct: 300 SVTARYKFNSMMRAPMHGFAFWFDVEFSGPTSLPAKNTSETSVASGSSSISPSGEVNQKK 359
Query: 353 RANPNEALVLSTAPEDPPTHWQQTMIYFYDPIEVEQDQLIEGSVVLSQSKENARFMNIHL 412
R NP++ALVLST+PE PPTHWQQT++YFYDPI+VEQDQ+IEGSV LSQSKEN RFMNIHL
Sbjct: 360 RTNPSDALVLSTSPEAPPTHWQQTIVYFYDPIDVEQDQVIEGSVTLSQSKENRRFMNIHL 419
Query: 413 EYASGGRSFVKESVMR 428
EY+S GRSFVKESVMR
Sbjct: 420 EYSSAGRSFVKESVMR 435
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449464964|ref|XP_004150199.1| PREDICTED: probable protein arginine N-methyltransferase 6-like [Cucumis sativus] gi|449508111|ref|XP_004163222.1| PREDICTED: probable protein arginine N-methyltransferase 6-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 619 bits (1596), Expect = e-175, Method: Compositional matrix adjust.
Identities = 307/428 (71%), Positives = 344/428 (80%), Gaps = 13/428 (3%)
Query: 1 MYSSIGYSNGHHHHHQPHQQERERMGGGLTSHKDRARRGGRRSRDSLRASEHQQQQQQQQ 60
MY++ G+ NG H ++R G R R S +R SE +Q Q +
Sbjct: 1 MYTNSGHINGFHDGSSSSSEKRP--GTVQKGRPRRGRGSRPSSGGGMRVSEDKQPTQVE- 57
Query: 61 QNDRKPATPCTDFDVAYFHSYAHVGIHEEMIKDRVRTETYRAAIMQNQSFIEGKVVVDVG 120
PCTDFD+AYF SY+HVGIHEEMIKD VRTETYRAAIMQ+QS I GKVV+DVG
Sbjct: 58 ------GPPCTDFDMAYFQSYSHVGIHEEMIKDSVRTETYRAAIMQHQSSIAGKVVMDVG 111
Query: 121 CGTGILSIFCAQAGAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVD 180
CGTGILSIFCAQAGA+RVYAVDASDIAVQA+EVVKANNL+D +IVLH RVEDV+IDE VD
Sbjct: 112 CGTGILSIFCAQAGARRVYAVDASDIAVQASEVVKANNLSDTIIVLHSRVEDVQIDEGVD 171
Query: 181 VIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWR 240
VIISEWMGYMLLYESMLGS+I ARDRWLKR GLILPS ATLYMAPVTH DRYS SIDFWR
Sbjct: 172 VIISEWMGYMLLYESMLGSIIYARDRWLKREGLILPSNATLYMAPVTHSDRYSASIDFWR 231
Query: 241 NVYGIDMSAMMPLAKQCAFEEPSVETITGENVLTWPHVVKHVDCYTIQIHELESIATTFK 300
+VYGIDMSAM+PLAKQCAFEEPS+ETI+GENVLTWP +VKH+DCYT+ I ELES+ ++K
Sbjct: 232 SVYGIDMSAMLPLAKQCAFEEPSIETISGENVLTWPEMVKHIDCYTVSISELESVTKSYK 291
Query: 301 FKSMMRAPLHGFAFWFDVEFSTPAISPANNHIPPVVVGSSNNHPMDGCQKKKRANPNEAL 360
FKSMMRAPLHGFAFWFDVEF P + + IP +N DG Q+KKRANPN+AL
Sbjct: 292 FKSMMRAPLHGFAFWFDVEFYGPG-TAMHGLIPS---NPDDNQVNDGSQRKKRANPNDAL 347
Query: 361 VLSTAPEDPPTHWQQTMIYFYDPIEVEQDQLIEGSVVLSQSKENARFMNIHLEYASGGRS 420
VLSTAPEDPPTHWQQT++YFYDP+EVEQDQLIEGSV LSQS+EN RFMNI LEY SGGRS
Sbjct: 348 VLSTAPEDPPTHWQQTIVYFYDPLEVEQDQLIEGSVTLSQSRENRRFMNIRLEYVSGGRS 407
Query: 421 FVKESVMR 428
FVKESVMR
Sbjct: 408 FVKESVMR 415
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|145332651|ref|NP_001078191.1| protein arginine N-methyltransferase 6 [Arabidopsis thaliana] gi|332642800|gb|AEE76321.1| protein arginine N-methyltransferase 6 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 589 bits (1519), Expect = e-166, Method: Compositional matrix adjust.
Identities = 298/436 (68%), Positives = 335/436 (76%), Gaps = 31/436 (7%)
Query: 1 MYSSIGYSNGHHHHHQPHQQERERMGGGLTSH---KDRARRGGRRSR----DSLRASEHQ 53
M S +SNG H H + ++ G L+S K R+ G R R + LR S+
Sbjct: 1 MQSGGDFSNGFHGDHHRELELEDKQGPSLSSFGRAKKRSHAGARDPRGGLANVLRVSDQL 60
Query: 54 QQQQQQQQNDRKPATPCTDFDVAYFHSYAHVGIHEEMIKDRVRTETYRAAIMQNQSFIEG 113
+ + + ++ P PCTDFDVAYFHSYAHVGIHEEMIKDR RTETYR AIMQ+QS IEG
Sbjct: 61 GEHKSLETSESSPP-PCTDFDVAYFHSYAHVGIHEEMIKDRARTETYREAIMQHQSLIEG 119
Query: 114 KVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDV 173
KVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQ DV
Sbjct: 120 KVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQ----------------------DV 157
Query: 174 EIDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYS 233
EIDEEVDVIISEWMGYMLLYESMLGSVITARDRWLK GGLILPS+ATLYMAP++HPDRYS
Sbjct: 158 EIDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKPGGLILPSHATLYMAPISHPDRYS 217
Query: 234 ESIDFWRNVYGIDMSAMMPLAKQCAFEEPSVETITGENVLTWPHVVKHVDCYTIQIHELE 293
SIDFWRNVYGIDMSAMM LAKQCAFEEPSVE+I+GENVLTWP VVKH+DC TI+I EL+
Sbjct: 218 HSIDFWRNVYGIDMSAMMQLAKQCAFEEPSVESISGENVLTWPEVVKHIDCKTIKIQELD 277
Query: 294 SIATTFKFKSMMRAPLHGFAFWFDVEFSTPAISPANNHIPPVVVGSSNNHPMDG-CQKKK 352
S+ +KF SMMRAP+HGFAFWFDVEFS PA SPA N + S++ G +KK
Sbjct: 278 SVTARYKFNSMMRAPMHGFAFWFDVEFSGPASSPAKNTSETSIASGSSSISPSGEVNQKK 337
Query: 353 RANPNEALVLSTAPEDPPTHWQQTMIYFYDPIEVEQDQLIEGSVVLSQSKENARFMNIHL 412
R NP++ALVLST+PE PPTHWQQT++YFYDPI+VEQDQ+IEGSV LSQSKEN RFMNIHL
Sbjct: 338 RTNPSDALVLSTSPESPPTHWQQTIVYFYDPIDVEQDQVIEGSVTLSQSKENKRFMNIHL 397
Query: 413 EYASGGRSFVKESVMR 428
EY+S GRSFVKESVMR
Sbjct: 398 EYSSAGRSFVKESVMR 413
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356577726|ref|XP_003556974.1| PREDICTED: probable protein arginine N-methyltransferase 6-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 565 bits (1455), Expect = e-158, Method: Compositional matrix adjust.
Identities = 276/370 (74%), Positives = 303/370 (81%), Gaps = 19/370 (5%)
Query: 59 QQQNDRKPATPCTDFDVAYFHSYAHVGIHEEMIKDRVRTETYRAAIMQNQSFIEGKVVVD 118
Q Q +P PCTDFDVAYFHSYAH+GIH+EMIKDRVRTETYR AIMQ+QS I GKVVVD
Sbjct: 44 QHQPQHRP--PCTDFDVAYFHSYAHLGIHQEMIKDRVRTETYRDAIMQHQSSIAGKVVVD 101
Query: 119 VGCGTGILSIFCAQAGAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEE 178
VGCGTGILSIFCAQAGAKRVYA+DASDIA+QANEVVKANNL+D ++VLHGRVEDVEIDEE
Sbjct: 102 VGCGTGILSIFCAQAGAKRVYAIDASDIALQANEVVKANNLSDVIVVLHGRVEDVEIDEE 161
Query: 179 VDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDF 238
VDVIISEWMGYMLLYESMLGSVI ARDRWLK GGLILPS ATLYMAPVTH DRYS+S+DF
Sbjct: 162 VDVIISEWMGYMLLYESMLGSVINARDRWLKPGGLILPSSATLYMAPVTHTDRYSDSVDF 221
Query: 239 WRNVYGIDMSAMMPLAKQCAFEEPSVETITGENVLTWPHVVKHVDCYTIQIHELESIATT 298
WRNVYGID C E V ++ VK++D Y++ + ELES+
Sbjct: 222 WRNVYGIDSE-----FSTCIISEKIVHSLLQ---------VKYIDSYSVTVQELESVTAK 267
Query: 299 FKFKSMMRAPLHGFAFWFDVEFSTPAISPANNHIPPVVVGSSNNHPMDGCQKKKRANPNE 358
FKF SMMRAPLHGFAFWFDVEF+ AIS N V +NH M+G Q+K+R NPNE
Sbjct: 268 FKFNSMMRAPLHGFAFWFDVEFNGHAISSTNYQSTTSFV---DNHQMNGSQRKRRTNPNE 324
Query: 359 ALVLSTAPEDPPTHWQQTMIYFYDPIEVEQDQLIEGSVVLSQSKENARFMNIHLEYASGG 418
ALVLSTAPEDPPTHWQQT+IYFYDPIE+EQDQLIEGSV LSQSKENARFMNIHLEY SGG
Sbjct: 325 ALVLSTAPEDPPTHWQQTLIYFYDPIELEQDQLIEGSVTLSQSKENARFMNIHLEYTSGG 384
Query: 419 RSFVKESVMR 428
RS+VKESVMR
Sbjct: 385 RSYVKESVMR 394
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|9293956|dbj|BAB01859.1| protein arginine N-methyltransferase-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 559 bits (1440), Expect = e-156, Method: Compositional matrix adjust.
Identities = 291/436 (66%), Positives = 324/436 (74%), Gaps = 45/436 (10%)
Query: 1 MYSSIGYSNGHHHHHQPHQQERERMGGGLTSH---KDRARRGGRRSR----DSLRASEHQ 53
M S +SNG H H + ++ G L+S K R+ G R R + LR S+
Sbjct: 1 MQSGGDFSNGFHGDHHRELELEDKQGPSLSSFGRAKKRSHAGARDPRGGLANVLRVSDQL 60
Query: 54 QQQQQQQQNDRKPATPCTDFDVAYFHSYAHVGIHEEMIKDRVRTETYRAAIMQNQSFIEG 113
+ + + ++ P PCTDFDVAYFHSYAHVGIHEEMIKDR RTETYR AIMQ+QS IEG
Sbjct: 61 GEHKSLETSESSPP-PCTDFDVAYFHSYAHVGIHEEMIKDRARTETYREAIMQHQSLIEG 119
Query: 114 KVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDV 173
KVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQA EVVKAN L+DKVIVLHGRVEDV
Sbjct: 120 KVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQAKEVVKANGLSDKVIVLHGRVEDV 179
Query: 174 EIDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYS 233
EIDEEVDVIISEWMGYMLLYESMLGSVITARDRWLK GGLILPS+ATLYMAP++HPDRYS
Sbjct: 180 EIDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKPGGLILPSHATLYMAPISHPDRYS 239
Query: 234 ESIDFWRNVYGIDMSAMMPLAKQCAFEEPSVETITGENVLTWPHVVKHVDCYTIQIHELE 293
SIDFWRNVYGIDMSAMM LAKQCAFEEPSVE+I+GENVLTWP VV
Sbjct: 240 HSIDFWRNVYGIDMSAMMQLAKQCAFEEPSVESISGENVLTWPEVV-------------- 285
Query: 294 SIATTFKFKSMMRAPLHGFAFWFDVEFSTPAISPANNHIPPVVVGSSNNHPMDG-CQKKK 352
F +EFS PA SPA N + S++ G +KK
Sbjct: 286 ----------------------FPLEFSGPASSPAKNTSETSIASGSSSISPSGEVNQKK 323
Query: 353 RANPNEALVLSTAPEDPPTHWQQTMIYFYDPIEVEQDQLIEGSVVLSQSKENARFMNIHL 412
R NP++ALVLST+PE PPTHWQQT++YFYDPI+VEQDQ+IEGSV LSQSKEN RFMNIHL
Sbjct: 324 RTNPSDALVLSTSPESPPTHWQQTIVYFYDPIDVEQDQVIEGSVTLSQSKENKRFMNIHL 383
Query: 413 EYASGGRSFVKESVMR 428
EY+S GRSFVKESVMR
Sbjct: 384 EYSSAGRSFVKESVMR 399
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 428 | ||||||
| TAIR|locus:2087540 | 435 | PRMT6 "protein arginine methyl | 0.841 | 0.827 | 0.792 | 6.5e-154 | |
| ZFIN|ZDB-GENE-040914-7 | 349 | prmt6 "protein arginine methyl | 0.572 | 0.702 | 0.476 | 3.7e-68 | |
| UNIPROTKB|E2QWI7 | 376 | PRMT6 "Uncharacterized protein | 0.637 | 0.726 | 0.439 | 4.7e-68 | |
| UNIPROTKB|Q5E9L5 | 375 | PRMT6 "Protein arginine N-meth | 0.637 | 0.728 | 0.439 | 2e-67 | |
| MGI|MGI:2139971 | 378 | Prmt6 "protein arginine N-meth | 0.635 | 0.719 | 0.444 | 4.2e-67 | |
| RGD|1304701 | 375 | Prmt6 "protein arginine methyl | 0.635 | 0.725 | 0.440 | 5.4e-67 | |
| UNIPROTKB|Q96LA8 | 375 | PRMT6 "Protein arginine N-meth | 0.635 | 0.725 | 0.437 | 1.4e-66 | |
| UNIPROTKB|B0JYW5 | 340 | prmt6 "Protein arginine N-meth | 0.579 | 0.729 | 0.462 | 2.3e-66 | |
| UNIPROTKB|Q68EZ3 | 340 | prmt6 "Protein arginine N-meth | 0.572 | 0.720 | 0.468 | 1.3e-65 | |
| TAIR|locus:2051995 | 366 | PRMT1A "protein arginine methy | 0.593 | 0.693 | 0.406 | 1.4e-60 |
| TAIR|locus:2087540 PRMT6 "protein arginine methyltransferase 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1501 (533.4 bits), Expect = 6.5e-154, P = 6.5e-154
Identities = 286/361 (79%), Positives = 310/361 (85%)
Query: 69 PCTDFDVAYFHSYAHVGIHEEMIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSI 128
PCTDFDVAYFHSYAHVGIHEEMIKDR RTETYR AIMQ+QS IEGKVVVDVGCGTGILSI
Sbjct: 75 PCTDFDVAYFHSYAHVGIHEEMIKDRARTETYREAIMQHQSLIEGKVVVDVGCGTGILSI 134
Query: 129 FCAQAGAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRXXXXXXXXXXXXXXSEWMG 188
FCAQAGAKRVYAVDASDIAVQA EVVKAN L+DKVIVLHGR SEWMG
Sbjct: 135 FCAQAGAKRVYAVDASDIAVQAKEVVKANGLSDKVIVLHGRVEDVEIDEEVDVIISEWMG 194
Query: 189 YMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMS 248
YMLLYESMLGSVITARDRWLK GGLILPS+ATLYMAP++HPDRYS SIDFWRNVYGIDMS
Sbjct: 195 YMLLYESMLGSVITARDRWLKPGGLILPSHATLYMAPISHPDRYSHSIDFWRNVYGIDMS 254
Query: 249 AMMPLAKQCAFEEPSVETITGENVLTWPHVVKHVDCYTIQIHELESIATTFKFKSMMRAP 308
AMM LAKQCAFEEPSVE+I+GENVLTWP VVKH+DC TI+I EL+S+ +KF SMMRAP
Sbjct: 255 AMMQLAKQCAFEEPSVESISGENVLTWPEVVKHIDCKTIKIQELDSVTARYKFNSMMRAP 314
Query: 309 LHGFAFWFDVEFSTPAISPANNHIPPVVV-GSSNNHPMDGCQKKKRANPNEALVLSTAPE 367
+HGFAFWFDVEFS PA SPA N + GSS+ P +KKR NP++ALVLST+PE
Sbjct: 315 MHGFAFWFDVEFSGPASSPAKNTSETSIASGSSSISPSGEVNQKKRTNPSDALVLSTSPE 374
Query: 368 DPPTHWQQTMIYFYDPIEVEQDQLIEGSVVLSQSKENARFMNIHLEYASGGRSFVKESVM 427
PPTHWQQT++YFYDPI+VEQDQ+IEGSV LSQSKEN RFMNIHLEY+S GRSFVKESVM
Sbjct: 375 SPPTHWQQTIVYFYDPIDVEQDQVIEGSVTLSQSKENKRFMNIHLEYSSAGRSFVKESVM 434
Query: 428 R 428
R
Sbjct: 435 R 435
|
|
| ZFIN|ZDB-GENE-040914-7 prmt6 "protein arginine methyltransferase 6" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 569 (205.4 bits), Expect = 3.7e-68, Sum P(2) = 3.7e-68
Identities = 120/252 (47%), Positives = 155/252 (61%)
Query: 74 DVAYFHSYAHVGIHEEMIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA 133
D YF SY+ V IHEEMI D VRT TYR I +N IEGKVV+DVG GTG+LS+FCAQA
Sbjct: 17 DYMYFDSYSDVTIHEEMIADTVRTNTYRMGIFKNSKSIEGKVVLDVGAGTGVLSLFCAQA 76
Query: 134 GAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRXXXXXXXXXXXXXXSEWMGYMLLY 193
GA++VYAV+AS IA QA ++VK N + D++ V+ SEWMGY LL+
Sbjct: 77 GARKVYAVEASSIADQAVKIVKLNQMEDRIEVIKSTLETIELAEKVDVIVSEWMGYALLH 136
Query: 194 ESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSES-IDFWRNV---YGIDMSA 249
ESML SVI ARD+WLK GGLILPS A LY+AP+ D E +DFW V YG+DMS
Sbjct: 137 ESMLNSVIFARDKWLKPGGLILPSRADLYIAPIN--DVVVEGRLDFWSTVKGQYGVDMSC 194
Query: 250 MMPLAKQCAFEEP-SVETITGENVLTWPHVVKHVDCYTIQIHELESIATTFKFKSMMRAP 308
M A++C + +V +T E+VL+ P +D T+ + +L + +F +
Sbjct: 195 MTDFARKCIMNKDITVNPVTVEDVLSHPCKFAELDLNTVTLEQLRDVNGSFSCVCFGSSS 254
Query: 309 LHGFAFWFDVEF 320
+H F WF V F
Sbjct: 255 IHAFCVWFTVTF 266
|
|
| UNIPROTKB|E2QWI7 PRMT6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 567 (204.7 bits), Expect = 4.7e-68, Sum P(2) = 4.7e-68
Identities = 127/289 (43%), Positives = 173/289 (59%)
Query: 65 KPATPCTDFDVAYFHSYAHVGIHEEMIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTG 124
+P + D Y+ YA + +HEEMI DRVRT+ YR I++N + + GK V+DVG GTG
Sbjct: 36 RPRRARRERDQLYYECYADISVHEEMIADRVRTDAYRLGILRNWAGLRGKTVLDVGAGTG 95
Query: 125 ILSIFCAQAGAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRXXXXXXXXXXXXXXS 184
ILS+FC QAGA+RVYAV+AS I QA +VV+ N L D+V VL G S
Sbjct: 96 ILSLFCVQAGARRVYAVEASAIWQQARDVVRLNGLEDRVHVLPGPVETVELPEQVDAIVS 155
Query: 185 EWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSE-SIDFWRNV- 242
EWMGY LL+ESML SV+ AR RWLK GGL+LP+ A L++APV+ D+ E + FW V
Sbjct: 156 EWMGYGLLHESMLRSVLHARARWLKEGGLLLPASAELFVAPVS--DQMLELRLGFWSQVK 213
Query: 243 --YGIDMSAMMPLAKQCAF--EEPSVETITGENVLTWPHVVKHVDCYTIQIH-ELES-IA 296
YG+DMS + A +C E V++++GE+VL PH ++ + ELE+ +
Sbjct: 214 QLYGVDMSCLESFATRCLMGHSEIVVQSLSGEDVLARPHCFARLELARSGLEQELEAGVG 273
Query: 297 TTFKFKSMMRAPLHGFAFWFDVEFSTPAISPANNHIPPVVVGSSNNHPM 345
F+F AP+HGFA WF V F P + P+V+ +S HP+
Sbjct: 274 GRFRFSCYGSAPMHGFAVWFQVTF------PGGDAEKPLVLSTSPFHPV 316
|
|
| UNIPROTKB|Q5E9L5 PRMT6 "Protein arginine N-methyltransferase 6" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 569 (205.4 bits), Expect = 2.0e-67, Sum P(2) = 2.0e-67
Identities = 127/289 (43%), Positives = 173/289 (59%)
Query: 65 KPATPCTDFDVAYFHSYAHVGIHEEMIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTG 124
+P + D Y+ Y+ V +HEEMI DRVRT+ YR I++N + + GK V+DVG GTG
Sbjct: 35 RPRRTRRERDQLYYQCYSDVSVHEEMIADRVRTDAYRLGILRNWAALRGKTVLDVGAGTG 94
Query: 125 ILSIFCAQAGAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRXXXXXXXXXXXXXXS 184
ILSIFCAQAGA+RVYAV+ASDI QA EVV+ N L D+V VL G S
Sbjct: 95 ILSIFCAQAGARRVYAVEASDIWQQAREVVRLNGLEDRVHVLPGPVETVELPEQVDAIVS 154
Query: 185 EWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSE-SIDFW---R 240
EWMG LL+ESML SV+ AR +WLK GGL+LP+ A L++AP++ D+ E + FW +
Sbjct: 155 EWMGCGLLHESMLSSVLHARTKWLKEGGLLLPASAELFVAPIS--DQMLELRLSFWSQMK 212
Query: 241 NVYGIDMSAMMPLAKQCAF--EEPSVETITGENVLTWPHVVKHVDCYTIQIH-ELES-IA 296
+YG+DMS + A +C E V+ ++GE+VL P ++ + ELE+ +
Sbjct: 213 QLYGVDMSCLESFATRCLMGHSEIVVQGLSGEDVLARPQCFARLELARAGLEQELEAGVG 272
Query: 297 TTFKFKSMMRAPLHGFAFWFDVEFSTPAISPANNHIPPVVVGSSNNHPM 345
F+F AP+HGFA WF V F P + PVV+ +S HP+
Sbjct: 273 GRFRFSCYGSAPMHGFAIWFQVTF------PGGDSEKPVVLSTSPFHPV 315
|
|
| MGI|MGI:2139971 Prmt6 "protein arginine N-methyltransferase 6" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 561 (202.5 bits), Expect = 4.2e-67, Sum P(2) = 4.2e-67
Identities = 128/288 (44%), Positives = 171/288 (59%)
Query: 65 KPATPCTDFDVAYFHSYAHVGIHEEMIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTG 124
+P ++ D Y+ Y+ V +HEEMI D+VRTE YR I++N + + GK V+DVG GTG
Sbjct: 38 RPRRTKSERDQLYYECYSDVSVHEEMIADQVRTEAYRLGILKNWAALRGKTVLDVGAGTG 97
Query: 125 ILSIFCAQAGAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRXXXXXXXXXXXXXXS 184
ILSIFCAQAGA+RVYAV+AS I QA EVV+ N L D+V VL G S
Sbjct: 98 ILSIFCAQAGARRVYAVEASAIWQQAREVVRLNGLEDRVHVLPGPVETVELPERVDAIVS 157
Query: 185 EWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSE-SIDFWRNV- 242
EWMGY LL+ESML SV+ AR +WLK GGL+LP+ A L++AP++ D+ E + FW V
Sbjct: 158 EWMGYGLLHESMLSSVLHARTKWLKEGGLLLPASAELFVAPIS--DQMLEWRLGFWSQVK 215
Query: 243 --YGIDMSAMMPLAKQCAF--EEPSVETITGENVLTWPHVVKHVDCYTIQIH-ELES-IA 296
YG+DMS M A +C E V+ ++GE+VL P ++ + ELE+ +
Sbjct: 216 QHYGVDMSCMESFATRCLMGHSEIVVQDLSGEDVLARPQRFAQLELARAGLEQELEAGVG 275
Query: 297 TTFKFKSMMRAPLHGFAFWFDVEFSTPAISPANNHIPPVVVGSSNNHP 344
F+ APLHGFA WF V F P + P+V+ +S HP
Sbjct: 276 GRFRCSCYGSAPLHGFAVWFQVTF------PGGDSEKPLVLSTSPFHP 317
|
|
| RGD|1304701 Prmt6 "protein arginine methyltransferase 6" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 558 (201.5 bits), Expect = 5.4e-67, Sum P(2) = 5.4e-67
Identities = 127/288 (44%), Positives = 169/288 (58%)
Query: 65 KPATPCTDFDVAYFHSYAHVGIHEEMIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTG 124
+P + D Y+ Y+ V +HEEMI DRVRT+ YR I++N + + GK V+DVG GTG
Sbjct: 35 RPRRTKRERDQLYYECYSDVSVHEEMIADRVRTDAYRLGILRNWAALRGKTVLDVGAGTG 94
Query: 125 ILSIFCAQAGAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRXXXXXXXXXXXXXXS 184
ILSIFCAQAGA+RVYAV+AS I QA EVV+ N L D+V +L G S
Sbjct: 95 ILSIFCAQAGARRVYAVEASAIWQQAQEVVRLNGLEDRVHILPGPVETVELPEQVDAIVS 154
Query: 185 EWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSE-SIDFWRNV- 242
EWMGY LL+ESML SV+ AR +WLK GGL+LP A L++AP++ D+ E + FW V
Sbjct: 155 EWMGYGLLHESMLSSVLHARTKWLKEGGLLLPDSAELFVAPIS--DQMLEWRLGFWSQVK 212
Query: 243 --YGIDMSAMMPLAKQCAF--EEPSVETITGENVLTWPHVVKHVDCYTIQIH-ELES-IA 296
YG+DMS M A +C E V+ ++GE+VL P ++ + ELE+ +
Sbjct: 213 QHYGVDMSCMESFATRCLMGHSEIVVQGLSGEDVLARPQRFAQLELARAGLEQELEAGVG 272
Query: 297 TTFKFKSMMRAPLHGFAFWFDVEFSTPAISPANNHIPPVVVGSSNNHP 344
F+ APLHGFA WF V F P + P+V+ +S HP
Sbjct: 273 GRFRCSCYGSAPLHGFAIWFQVTF------PGGDSEKPLVLSTSPFHP 314
|
|
| UNIPROTKB|Q96LA8 PRMT6 "Protein arginine N-methyltransferase 6" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 552 (199.4 bits), Expect = 1.4e-66, Sum P(2) = 1.4e-66
Identities = 126/288 (43%), Positives = 169/288 (58%)
Query: 65 KPATPCTDFDVAYFHSYAHVGIHEEMIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTG 124
+P + D Y+ Y+ V +HEEMI DRVRT+ YR I++N + + GK V+DVG GTG
Sbjct: 35 RPRRTKRERDQLYYECYSDVSVHEEMIADRVRTDAYRLGILRNWAALRGKTVLDVGAGTG 94
Query: 125 ILSIFCAQAGAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRXXXXXXXXXXXXXXS 184
ILSIFCAQAGA+RVYAV+AS I QA EVV+ N L D+V VL G S
Sbjct: 95 ILSIFCAQAGARRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVS 154
Query: 185 EWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSE-SIDFWRNV- 242
EWMGY LL+ESML SV+ AR +WLK GGL+LP+ A L++AP++ D+ E + FW V
Sbjct: 155 EWMGYGLLHESMLSSVLHARTKWLKEGGLLLPASAELFIAPIS--DQMLEWRLGFWSQVK 212
Query: 243 --YGIDMSAMMPLAKQCAF--EEPSVETITGENVLTWPHVVKHVDCYTIQIH-ELES-IA 296
YG+DMS + A +C E V+ ++GE+VL P ++ + ELE+ +
Sbjct: 213 QHYGVDMSCLEGFATRCLMGHSEIVVQGLSGEDVLARPQRFAQLELSRAGLEQELEAGVG 272
Query: 297 TTFKFKSMMRAPLHGFAFWFDVEFSTPAISPANNHIPPVVVGSSNNHP 344
F+ AP+HGFA WF V F P P+V+ +S HP
Sbjct: 273 GRFRCSCYGSAPMHGFAIWFQVTF------PGGESEKPLVLSTSPFHP 314
|
|
| UNIPROTKB|B0JYW5 prmt6 "Protein arginine N-methyltransferase 6" [Xenopus (Silurana) tropicalis (taxid:8364)] | Back alignment and assigned GO terms |
|---|
Score = 554 (200.1 bits), Expect = 2.3e-66, Sum P(2) = 2.3e-66
Identities = 118/255 (46%), Positives = 160/255 (62%)
Query: 71 TDFDVAYFHSYAHVGIHEEMIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFC 130
T+ D YF Y+ V +HEEMI D VRT Y+ A+++N S ++GK V+DVG GTGILS+F
Sbjct: 12 TEQDCEYFQCYSDVSVHEEMIADTVRTNAYKLALLRNHSSLQGKTVLDVGAGTGILSVFS 71
Query: 131 AQAGAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRXXXXXXXXXXXXXXSEWMGYM 190
QAGA+ VYAV+AS ++ A +VVK+N++ +KV VL+ SEWMGY
Sbjct: 72 VQAGAQAVYAVEASSMSQLACQVVKSNDMENKVKVLNSSVESAEIPEQVDAIVSEWMGYA 131
Query: 191 LLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSES-IDFWRNV---YGID 246
L+YESML SVI ARD+WLK GGLILPS A L++APV D ES +DFW V YG+D
Sbjct: 132 LMYESMLPSVIYARDKWLKPGGLILPSCADLFIAPVN--DLIVESRLDFWSEVKGMYGVD 189
Query: 247 MSAMMPLAKQCAF-EEPSVETITGENVLTWPHVVKHVDCYTIQIHELESIATTFKFKSMM 305
MS M A+ C +E +V ++ E+VL++P +D E+ ++ +F+F
Sbjct: 190 MSCMQSFARSCIMNKEMAVNLVSPEDVLSFPVRFASLDLNVCTQEEVRNLHGSFQFSCFG 249
Query: 306 RAPLHGFAFWFDVEF 320
+ LHGFA WF V F
Sbjct: 250 SSLLHGFAVWFSVTF 264
|
|
| UNIPROTKB|Q68EZ3 prmt6 "Protein arginine N-methyltransferase 6" [Xenopus laevis (taxid:8355)] | Back alignment and assigned GO terms |
|---|
Score = 551 (199.0 bits), Expect = 1.3e-65, Sum P(2) = 1.3e-65
Identities = 118/252 (46%), Positives = 154/252 (61%)
Query: 74 DVAYFHSYAHVGIHEEMIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA 133
D YF Y+ V IHEEMI D VRT Y+ AI+ N ++G V+DVG GTGILS+FC QA
Sbjct: 15 DQEYFQCYSDVSIHEEMIADTVRTNGYKQAILHNHCALQGLTVLDVGAGTGILSVFCVQA 74
Query: 134 GAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRXXXXXXXXXXXXXXSEWMGYMLLY 193
GA RVYAV+AS ++ A+ VV N + +KV VL+ SEWMGY L+Y
Sbjct: 75 GATRVYAVEASAVSQLASHVVTLNGMDNKVKVLNSPVESAEIPEQVDAIVSEWMGYALMY 134
Query: 194 ESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSES-IDFWRNV---YGIDMSA 249
ESML SVI ARD+WLK GG+ILPS A L++AP+ DR ES +DFW V YG+DMS
Sbjct: 135 ESMLPSVIYARDKWLKPGGIILPSAADLFIAPIN--DRVVESRLDFWNEVKGLYGVDMSC 192
Query: 250 MMPLAKQCAF-EEPSVETITGENVLTWPHVVKHVDCYTIQIHELESIATTFKFKSMMRAP 308
M P A C +E +V ++ E+VL++P +D E+ ++ +F+F +
Sbjct: 193 MRPFAHSCIMNKEMAVNLLSPEDVLSFPVRFASLDLNVCTQEEVRNLHGSFQFSCFGSSL 252
Query: 309 LHGFAFWFDVEF 320
LHGFA WF V F
Sbjct: 253 LHGFALWFTVTF 264
|
|
| TAIR|locus:2051995 PRMT1A "protein arginine methyltransferase 1A" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 506 (183.2 bits), Expect = 1.4e-60, Sum P(2) = 1.4e-60
Identities = 106/261 (40%), Positives = 155/261 (59%)
Query: 62 NDRKPATPCTDFDVAYFHSYAHVGIHEEMIKDRVRTETYRAAIMQNQSFIEGKVVVDVGC 121
N+ A T D YF SY+H GIHEEM+KD VRT++Y+ I +N+ I+ K+V+DVG
Sbjct: 34 NNADVADDITSADY-YFDSYSHFGIHEEMLKDVVRTKSYQDVIYKNKFLIKDKIVLDVGA 92
Query: 122 GTGILSIFCAQAGAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRXXXXXXXX-XXX 180
GTGILS+FCA+AGA VYAV+ S +A A E+VK+N +D + VL G+
Sbjct: 93 GTGILSLFCAKAGAAHVYAVECSQMADTAKEIVKSNGFSDVITVLKGKIEEIELPVPKVD 152
Query: 181 XXXSEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWR 240
SEWMGY LLYE+ML +V+ AR++WL GG++LP A+LY+ + + ++FW
Sbjct: 153 VIISEWMGYFLLYENMLDTVLYARNKWLVDGGIVLPDKASLYVTAIEDAHYKDDKVEFWD 212
Query: 241 NVYGIDMSAMMPLAKQCAFEEPSVETITGENVLTWPHVVKHVDCYTIQIHELESIATTFK 300
+VYG DMS + K+ A EP V+T+ G ++T ++K +D + + S FK
Sbjct: 213 DVYGFDMSCI----KRRAITEPLVDTVDGNQIVTDSKLLKTMDISKMAAGDA-SFTAPFK 267
Query: 301 FKSMMRAPLHGFAFWFDVEFS 321
+ +H +FDV F+
Sbjct: 268 LVAQRNDHIHALVAYFDVSFT 288
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| A2Z8S0 | ANM62_ORYSI | 2, ., 1, ., 1, ., - | 0.6518 | 0.8294 | 0.8987 | N/A | no |
| Q75G68 | ANM62_ORYSJ | 2, ., 1, ., 1, ., - | 0.6518 | 0.8294 | 0.8987 | yes | no |
| A2XYY8 | ANM61_ORYSI | 2, ., 1, ., 1, ., - | 0.5974 | 0.8668 | 0.9788 | N/A | no |
| Q08A71 | ANM6_ARATH | 2, ., 1, ., 1, ., - | 0.7270 | 0.9976 | 0.9816 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| PRMT6 | PRMT6 (PROTEIN ARGININE METHYLTRANSFERASE 6); methyltransferase; PROTEIN ARGININE METHYLTRANSFERASE 6 (PRMT6); FUNCTIONS IN- methyltransferase activity; INVOLVED IN- metabolic process; EXPRESSED IN- 19 plant structures; EXPRESSED DURING- 7 growth stages; CONTAINS InterPro DOMAIN/s- Methyltransferase type 11 (InterPro-IPR013216); BEST Arabidopsis thaliana protein match is- PRMT1A (PROTEIN ARGININE METHYLTRANSFERASE 1A); protein-arginine N-methyltransferase (TAIR-AT2G19670.1); Has 3635 Blast hits to 3579 proteins in 972 species- Archae - 81; Bacteria - 1747; Metazoa - 1005; Fungi - 174; [...] (435 aa) | ||||||||||
(Arabidopsis thaliana) | |||||||||||
Predicted Functional Partners: | |||||||||||
| AT5G53920 | ribosomal protein L11 methyltransferase-related; ribosomal protein L11 methyltransferase-relate [...] (371 aa) | • | 0.825 | ||||||||
| ATBAG2 | ATBAG2 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 2); A member of Arabidopsis BAG (Bcl-2 [...] (296 aa) | • | 0.780 | ||||||||
| AT4G18030 | dehydration-responsive family protein; dehydration-responsive family protein; INVOLVED IN- biol [...] (621 aa) | • | 0.653 | ||||||||
| BAG6 | BAG6 (BCL-2-ASSOCIATED ATHANOGENE 6); calmodulin binding / protein binding; A member of Arabido [...] (1043 aa) | • | 0.534 | ||||||||
| ATCXE13 | ATCXE13 (ARABIDOPSIS THALIANA CARBOXYESTERASE 13); hydrolase; ARABIDOPSIS THALIANA CARBOXYESTER [...] (329 aa) | • | 0.468 | ||||||||
| PRMT7 | PRMT7 (PROTEIN ARGININE METHYLTRANSFERASE 7); methyltransferase; PROTEIN ARGININE METHYLTRANSFE [...] (724 aa) | • | • | 0.446 | |||||||
| AT5G65360 | histone H3; histone H3; FUNCTIONS IN- DNA binding; INVOLVED IN- nucleosome assembly; LOCATED IN [...] (136 aa) | • | 0.408 | ||||||||
| AT5G10980 | histone H3; histone H3; FUNCTIONS IN- DNA binding; INVOLVED IN- nucleosome assembly; LOCATED IN [...] (136 aa) | • | 0.408 | ||||||||
| AT5G10390 | histone H3; histone H3; FUNCTIONS IN- DNA binding; INVOLVED IN- nucleosome assembly; LOCATED IN [...] (136 aa) | • | 0.408 | ||||||||
| AT4G40030 | histone H3.2; histone H3.2; FUNCTIONS IN- DNA binding; INVOLVED IN- nucleosome assembly; LOCATE [...] (164 aa) | • | 0.408 | ||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 428 | |||
| cd02440 | 107 | cd02440, AdoMet_MTases, S-adenosylmethionine-depen | 4e-17 | |
| PRK00517 | 250 | PRK00517, prmA, ribosomal protein L11 methyltransf | 2e-14 | |
| COG2264 | 300 | COG2264, PrmA, Ribosomal protein L11 methylase [Tr | 2e-12 | |
| COG2263 | 198 | COG2263, COG2263, Predicted RNA methylase [Transla | 1e-11 | |
| pfam12847 | 104 | pfam12847, Methyltransf_18, Methyltransferase doma | 1e-11 | |
| pfam06325 | 294 | pfam06325, PrmA, Ribosomal protein L11 methyltrans | 1e-10 | |
| COG2890 | 280 | COG2890, HemK, Methylase of polypeptide chain rele | 1e-09 | |
| TIGR00406 | 288 | TIGR00406, prmA, ribosomal protein L11 methyltrans | 2e-09 | |
| COG4076 | 252 | COG4076, COG4076, Predicted RNA methylase [General | 3e-09 | |
| pfam13659 | 117 | pfam13659, Methyltransf_26, Methyltransferase doma | 3e-09 | |
| pfam08241 | 92 | pfam08241, Methyltransf_11, Methyltransferase doma | 6e-09 | |
| pfam02475 | 199 | pfam02475, Met_10, Met-10+ like-protein | 2e-08 | |
| PRK14968 | 188 | PRK14968, PRK14968, putative methyltransferase; Pr | 5e-08 | |
| pfam05175 | 170 | pfam05175, MTS, Methyltransferase small domain | 6e-08 | |
| COG2227 | 243 | COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-m | 7e-08 | |
| pfam13649 | 97 | pfam13649, Methyltransf_25, Methyltransferase doma | 9e-08 | |
| PRK09328 | 275 | PRK09328, PRK09328, N5-glutamine S-adenosyl-L-meth | 1e-07 | |
| pfam13847 | 151 | pfam13847, Methyltransf_31, Methyltransferase doma | 1e-07 | |
| COG4123 | 248 | COG4123, COG4123, Predicted O-methyltransferase [G | 5e-07 | |
| COG2813 | 300 | COG2813, RsmC, 16S RNA G1207 methylase RsmC [Trans | 1e-06 | |
| COG1092 | 393 | COG1092, COG1092, Predicted SAM-dependent methyltr | 1e-06 | |
| TIGR01983 | 224 | TIGR01983, UbiG, ubiquinone biosynthesis O-methylt | 2e-06 | |
| TIGR03534 | 251 | TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) met | 2e-06 | |
| COG2520 | 341 | COG2520, COG2520, Predicted methyltransferase [Gen | 4e-06 | |
| PRK00377 | 198 | PRK00377, cbiT, cobalt-precorrin-6Y C(15)-methyltr | 6e-06 | |
| PRK00107 | 187 | PRK00107, gidB, 16S rRNA methyltransferase GidB; R | 1e-05 | |
| COG2230 | 283 | COG2230, Cfa, Cyclopropane fatty acid synthase and | 2e-05 | |
| COG0742 | 187 | COG0742, COG0742, N6-adenine-specific methylase [D | 2e-05 | |
| PLN02585 | 315 | PLN02585, PLN02585, magnesium protoporphyrin IX me | 4e-05 | |
| COG2242 | 187 | COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme | 4e-05 | |
| PRK14967 | 223 | PRK14967, PRK14967, putative methyltransferase; Pr | 9e-05 | |
| COG0500 | 257 | COG0500, SmtA, SAM-dependent methyltransferases [S | 9e-05 | |
| PRK05134 | 233 | PRK05134, PRK05134, bifunctional 3-demethylubiquin | 1e-04 | |
| PRK07580 | 230 | PRK07580, PRK07580, Mg-protoporphyrin IX methyl tr | 1e-04 | |
| COG2519 | 256 | COG2519, GCD14, tRNA(1-methyladenosine) methyltran | 1e-04 | |
| pfam02527 | 184 | pfam02527, GidB, rRNA small subunit methyltransfer | 1e-04 | |
| pfam08242 | 98 | pfam08242, Methyltransf_12, Methyltransferase doma | 1e-04 | |
| pfam03602 | 183 | pfam03602, Cons_hypoth95, Conserved hypothetical p | 3e-04 | |
| TIGR00452 | 314 | TIGR00452, TIGR00452, tRNA (mo5U34)-methyltransfer | 4e-04 | |
| COG1189 | 245 | COG1189, COG1189, Predicted rRNA methylase [Transl | 5e-04 | |
| pfam13489 | 154 | pfam13489, Methyltransf_23, Methyltransferase doma | 5e-04 | |
| TIGR00536 | 284 | TIGR00536, hemK_fam, HemK family putative methylas | 6e-04 | |
| TIGR00138 | 181 | TIGR00138, gidB, 16S rRNA (guanine(527)-N(7))-meth | 7e-04 | |
| pfam05185 | 445 | pfam05185, PRMT5, PRMT5 arginine-N-methyltransfera | 8e-04 | |
| TIGR00478 | 228 | TIGR00478, tly, hemolysin TlyA family protein | 9e-04 | |
| TIGR02021 | 219 | TIGR02021, BchM-ChlM, magnesium protoporphyrin O-m | 0.001 | |
| PLN02336 | 475 | PLN02336, PLN02336, phosphoethanolamine N-methyltr | 0.001 | |
| pfam01728 | 177 | pfam01728, FtsJ, FtsJ-like methyltransferase | 0.001 | |
| COG2265 | 432 | COG2265, TrmA, SAM-dependent methyltransferases re | 0.002 | |
| COG3897 | 218 | COG3897, COG3897, Predicted methyltransferase [Gen | 0.003 | |
| TIGR01444 | 144 | TIGR01444, fkbM_fam, methyltransferase, FkbM famil | 0.004 | |
| TIGR03533 | 284 | TIGR03533, L3_gln_methyl, protein-(glutamine-N5) m | 0.004 |
| >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Score = 76.3 bits (188), Expect = 4e-17
Identities = 37/110 (33%), Positives = 52/110 (47%), Gaps = 8/110 (7%)
Query: 116 VVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDV-- 173
V+D+GCGTG L++ A RV VD S +A++ A L D V VL G E++
Sbjct: 2 VLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP 61
Query: 174 EIDEEVDVIISEW--MGYMLLYESMLGSVITARDRWLKRGGLILPSYATL 221
E DE DVIIS+ + L R LK GG+++ +
Sbjct: 62 EADESFDVIISDPPLHHLVEDLARFLEEAR----RLLKPGGVLVLTLVLA 107
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107 |
| >gnl|CDD|234786 PRK00517, prmA, ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 72.5 bits (179), Expect = 2e-14
Identities = 31/73 (42%), Positives = 42/73 (57%), Gaps = 8/73 (10%)
Query: 112 EGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQ-ANEVVKANNLTDKVIVLHGRV 170
GK V+DVGCG+GIL+I A+ GAK+V AVD AV+ A E + N + V + G
Sbjct: 119 PGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQG-- 176
Query: 171 EDVEIDEEVDVII 183
D + DVI+
Sbjct: 177 -----DLKADVIV 184
|
Length = 250 |
| >gnl|CDD|225173 COG2264, PrmA, Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 2e-12
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 112 EGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQ-ANEVVKANNLTDKVIVLHGRV 170
+GK V+DVGCG+GIL+I A+ GAK+V VD AV+ A E + N + V +
Sbjct: 162 KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLL 221
Query: 171 EDVEIDEEVDVII 183
+V + DVI+
Sbjct: 222 LEVPENGPFDVIV 234
|
Length = 300 |
| >gnl|CDD|225172 COG2263, COG2263, Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 1e-11
Identities = 36/103 (34%), Positives = 50/103 (48%), Gaps = 16/103 (15%)
Query: 92 KDRVRTETYR------AAIM---QNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVD 142
++ E YR A I+ + +EGK V+D+G GTGIL+I A GA RV AV
Sbjct: 16 NPKLGLEQYRTPAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAV- 74
Query: 143 ASDIAVQANEVVKAN--NLTDKVIVLHGRVEDVEIDEEVDVII 183
DI +A E+ +AN L V + V D + D +I
Sbjct: 75 --DIDPEALEIARANAEELLGDVEFVVADVSD--FRGKFDTVI 113
|
Length = 198 |
| >gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 1e-11
Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 10/107 (9%)
Query: 112 EGKVVVDVGCGTGILSI-FCAQAGAKRVYAVDASDIAVQ-ANEVVKANNLTDKVIVLHGR 169
G V+D+GCGTG L+I RV VD S ++ A E K ++ + G
Sbjct: 1 PGARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKLALG-PRITFVQGD 59
Query: 170 V-EDVEIDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLIL 215
+ +++ E D + G +L ++ LK GG ++
Sbjct: 60 APDALDLLEGFDAVFI--GGGGGDLLELLDALA----SLLKPGGRLV 100
|
Protein in this family function as methyltransferases. Length = 104 |
| >gnl|CDD|218990 pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA) | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 1e-10
Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 6/74 (8%)
Query: 112 EGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQ-ANEVVKANNLTDKVIV-LHGR 169
G+ V+DVGCG+GIL+I + GAK+V VD +AV+ A E + N + ++ V L G
Sbjct: 160 PGETVLDVGCGSGILAIAALKLGAKKVVGVDIDPVAVRAAKENAELNGVEAQLEVYLPGD 219
Query: 170 VEDVEIDEEVDVII 183
+ + + DV++
Sbjct: 220 L----PEGKADVVV 229
|
This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences. Length = 294 |
| >gnl|CDD|225443 COG2890, HemK, Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 1e-09
Identities = 46/208 (22%), Positives = 81/208 (38%), Gaps = 47/208 (22%)
Query: 42 RSRDSLRASEHQQQQQQQQQNDRKPATPCTDFDVAYFHSYAHVGIHEEMIKDRV---RTE 98
+ SE + ++ ++ R P VAY A G + + V R +
Sbjct: 41 LAHPEAELSEEELERLRELLERRAEGEP-----VAYILGSAEFGGLRFKVDEGVLIPRPD 95
Query: 99 TYR---AAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAK-RVYAVDASDIAVQ-ANEV 153
T AA+ K ++D+G G+G ++I A+ G V AVD S A+ A E
Sbjct: 96 TELLVEAALALLLQ--LDKRILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALAREN 153
Query: 154 VKANNLTDKVIVLHGRVEDVEIDEEVDVIIS--------------EWMGY---------- 189
+ N L +V+V+ + + + + D+I+S E + Y
Sbjct: 154 AERNGL-VRVLVVQSDLFE-PLRGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGG 211
Query: 190 --MLLYESMLGSVITARDRWLKRGGLIL 215
+ +Y +LG LK GG+++
Sbjct: 212 DGLEVYRRILGEA----PDILKPGGVLI 235
|
Length = 280 |
| >gnl|CDD|232960 TIGR00406, prmA, ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 2e-09
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 113 GKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQANEV-VKANNLTDKVIVLHGRVE 171
K V+DVGCG+GILSI + GA +V +D +AV++ + N ++D++ V +E
Sbjct: 160 DKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLE 219
Query: 172 DVEIDEEVDVII 183
I+ + DVI+
Sbjct: 220 Q-PIEGKADVIV 230
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 288 |
| >gnl|CDD|226562 COG4076, COG4076, Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.2 bits (138), Expect = 3e-09
Identities = 51/198 (25%), Positives = 78/198 (39%), Gaps = 17/198 (8%)
Query: 87 HEEMIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-D 145
H ++++D R + +AI E D+G G+GILS+ A A A+RV A++
Sbjct: 11 HLDLLRDVERLAVFTSAI---AEVAED-TFADLGAGSGILSVVAAHA-AERVIAIEKDPK 65
Query: 146 IAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWMGYMLLYESMLGSVITARD 205
A A E + V+ G D + E DV+I E + L+ E + VI A
Sbjct: 66 RARLAEENLHVPGD-VNWEVVVGDARDYDF-ENADVVICEMLDTALIEEKQV-PVINAVL 122
Query: 206 RWLKRGGLILPSYATLYMAPVTHPDRY--------SESIDFWRNVYGIDMSAMMPLAKQC 257
+L+ I+P + PV P R SE I+ + +P
Sbjct: 123 EFLRYDPTIIPQEVRIGANPVRRPPRTIRYDEGLPSEDIEPEVIYEVVRFDKPIPEVYNK 182
Query: 258 AFEEPSVETITGENVLTW 275
E + E G TW
Sbjct: 183 KLELETSEPNLGIAFFTW 200
|
Length = 252 |
| >gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 3e-09
Identities = 29/117 (24%), Positives = 46/117 (39%), Gaps = 12/117 (10%)
Query: 113 GKVVVDVGCGTGILSIFCAQAGAK-RVYAVDASDIAVQ-ANEVVKANNLTDKVIVLHGRV 170
G V+D G G+G + A+AG RV V+ A A + L +V V+ G
Sbjct: 1 GDRVLDPGAGSGAFLLAAARAGPDARVVGVELDPEAAALARRRLALAGLAPRVRVVVGDA 60
Query: 171 EDVEI--DEEVDVII-----SEWMGYMLLYESMLGSVITARDRWLKRGG---LILPS 217
++ D D+++ G + + A R LK GG +I P+
Sbjct: 61 RELLELPDGSFDLVLGNPPYGPRAGDPKDNRDLYDRFLAAALRLLKPGGVLVVITPA 117
|
This family contains methyltransferase domains. Length = 117 |
| >gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 6e-09
Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 10/100 (10%)
Query: 117 VDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDVEI- 175
+DVGCGTG+L+ A+ G RV VD S E++ + G ED+
Sbjct: 1 LDVGCGTGLLAEALARRGGARVTGVDLSP------EMLALARKRAPRKFVVGDAEDLPFP 54
Query: 176 DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLIL 215
DE DV++S +L + + R LK GG ++
Sbjct: 55 DESFDVVVSSL---VLHHLPDPERALREIARVLKPGGKLV 91
|
Members of this family are SAM dependent methyltransferases. Length = 92 |
| >gnl|CDD|202251 pfam02475, Met_10, Met-10+ like-protein | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 2e-08
Identities = 40/123 (32%), Positives = 58/123 (47%), Gaps = 13/123 (10%)
Query: 94 RVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAG-AKRVYAVDASDIAVQ-AN 151
R+ E R A + EG+VVVD+ G G SI A+ AKRVYAV+ + AV+
Sbjct: 86 RLIGERERIAKL----VKEGEVVVDMFAGIGPFSIPIAKHSKAKRVYAVELNPEAVKYLK 141
Query: 152 EVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRG 211
E +K N + + + G V DV ++ D +I M L + A +K G
Sbjct: 142 ENIKLNKVEGVISPILGDVRDVILEGVADRVI---MNLPKSAHEFLDKALRA----VKDG 194
Query: 212 GLI 214
G+I
Sbjct: 195 GVI 197
|
The methionine-10 mutant allele of N. crassa codes for a protein of unknown function. However, homologous proteins have been found in yeast suggesting this protein may be involved in methionine biosynthesis, transport and/or utilisation. Length = 199 |
| >gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 5e-08
Identities = 43/152 (28%), Positives = 63/152 (41%), Gaps = 42/152 (27%)
Query: 97 TETYRAA-----IMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAV-QA 150
E Y A + +N +G V++VG G+GI++I A+ G K+V VD + AV A
Sbjct: 3 DEVYEPAEDSFLLAENAVDKKGDRVLEVGTGSGIVAIVAAKNG-KKVVGVDINPYAVECA 61
Query: 151 NEVVKANNLTDKVIV---------LHGRVEDV----------EIDEEVDVIISEWMGYML 191
K NN+ + + G DV E +EE D +W+ Y L
Sbjct: 62 KCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPPYLPTEEEEEWD----DWLNYAL 117
Query: 192 --------LYESMLGSVITARDRWLKRGGLIL 215
+ + L V R+LK GG IL
Sbjct: 118 SGGKDGREVIDRFLDEV----GRYLKPGGRIL 145
|
Length = 188 |
| >gnl|CDD|203189 pfam05175, MTS, Methyltransferase small domain | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 6e-08
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Query: 111 IEGKVVVDVGCGTGILSIFCAQAGAK-RVYAVDASDIAVQ-ANEVVKANNLTDKVIVLHG 168
+ GKV+ D+GCG G+L A+ V VD + A++ A + AN L + V
Sbjct: 31 LGGKVL-DLGCGYGVLGAALAKRSPDLEVTMVDINARALESARANLAANGL-ENGEVFWS 88
Query: 169 RV-EDVEIDEEVDVIIS 184
+ VE + D+IIS
Sbjct: 89 DLYSAVE-PGKFDLIIS 104
|
This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases . Length = 170 |
| >gnl|CDD|225137 COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 7e-08
Identities = 38/138 (27%), Positives = 60/138 (43%), Gaps = 22/138 (15%)
Query: 84 VGIHEEMIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDA 143
+ + I++ R + + G V+DVGCG GILS A+ GA V +DA
Sbjct: 41 NPLRLDYIREVAR----------LRFDLPGLRVLDVGCGGGILSEPLARLGA-SVTGIDA 89
Query: 144 SDIAVQANEVVKANNLTDKVIV--LHGRVEDVEIDEE-VDVIIS-EWMGYMLLYESMLGS 199
S+ + EV K + L V + VED+ DV+ E +L + S
Sbjct: 90 SEKPI---EVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCME----VLEHVPDPES 142
Query: 200 VITARDRWLKRGGLILPS 217
+ A + +K GG++ S
Sbjct: 143 FLRACAKLVKPGGILFLS 160
|
Length = 243 |
| >gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 9e-08
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 116 VVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQ-ANEVVKANNLTDKVIVLHGRVEDV- 173
++D+GCGTG + A+AG V VD S A++ A E ++ KV + D+
Sbjct: 1 ILDLGCGTGRVLRALARAGPSSVTGVDISKEALELAKERLRDKGP--KVRFVVADARDLP 58
Query: 174 EIDEEVDVIIS 184
+ D++I
Sbjct: 59 FEEGSFDLVIC 69
|
This family appears to be a methyltransferase domain. Length = 97 |
| >gnl|CDD|236467 PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (127), Expect = 1e-07
Identities = 25/98 (25%), Positives = 39/98 (39%), Gaps = 13/98 (13%)
Query: 94 RVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSI----FCAQAGAKRVYAVDASDIAVQ 149
R TE ++ E V+D+G G+G +++ A V AVD S A+
Sbjct: 90 RPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDA---EVTAVDISPEAL- 145
Query: 150 ANEVVKAN---NLTDKVIVLHGRVEDVEIDEEVDVIIS 184
V + N L +V L G + D+I+S
Sbjct: 146 --AVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVS 181
|
Length = 275 |
| >gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 1e-07
Identities = 33/113 (29%), Positives = 54/113 (47%), Gaps = 15/113 (13%)
Query: 112 EGKVVVDVGCGTGILSIFCAQ--AGAKRVYAVDASDIAVQ-ANEVVKANNLTDKVIVLHG 168
G V+D+GCGTG L+ A+ V +D S+ A++ A E K + V + G
Sbjct: 3 SGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLGY-ENVEFIQG 61
Query: 169 RVEDVEI----DEEVDVIISEWMGYMLLY--ESMLGSVITARDRWLKRGGLIL 215
+E++ D DV+IS + L + +L +I R LK GG+++
Sbjct: 62 DIEELPQLQLEDNSFDVVISNEV-LNHLPDPDKVLEEII----RVLKPGGVLI 109
|
This family appears to be have methyltransferase activity. Length = 151 |
| >gnl|CDD|226608 COG4123, COG4123, Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 5e-07
Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Query: 116 VVDVGCGTGILSIFCAQAGAK-RVYAVDASDIAV-QANEVVKANNLTDKVIVLHGRVEDV 173
++D+G G G L + AQ K ++ V+ + A A V N L +++ V+ +++
Sbjct: 48 ILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEF 107
Query: 174 EID---EEVDVIIS 184
D+II
Sbjct: 108 LKALVFASFDLIIC 121
|
Length = 248 |
| >gnl|CDD|225370 COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 1e-06
Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 102 AAIMQNQSFIEGKVVVDVGCGTGILSIFCAQ-AGAKRVYAVDASDIAVQ-ANEVVKANNL 159
+++ G V+D+GCG G+L + A+ + ++ VD + AV+ A + + AN +
Sbjct: 148 RLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGV 207
Query: 160 TDKVIVLHGRVEDVEIDEEVDVIIS 184
+ + E VE + D+IIS
Sbjct: 208 ENTEVWASNLYEPVE--GKFDLIIS 230
|
Length = 300 |
| >gnl|CDD|224017 COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 1e-06
Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 14/92 (15%)
Query: 101 RAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQ-ANEVVKANNL 159
R A+ + GK V+++ TG S+ A GA V +VD S A++ A E + N L
Sbjct: 209 RRALGE---LAAGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGL 265
Query: 160 TDKVIVLHGRVEDV--------EIDEEVDVII 183
V DV E+ D+II
Sbjct: 266 DGDRHRF--IVGDVFKWLRKAERRGEKFDLII 295
|
Length = 393 |
| >gnl|CDD|233668 TIGR01983, UbiG, ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 2e-06
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Query: 94 RVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQ-ANE 152
+R + R I +N+ + G V+DVGCG G+LS A+ GA V +DAS+ ++ A
Sbjct: 27 PLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGAN-VTGIDASEENIEVAKL 85
Query: 153 VVKANNLTDKVIVLHGRVEDVEIDEE--VDVIIS 184
K + L K+ VED+ DV+
Sbjct: 86 HAKKDPLL-KIEYRCTSVEDLAEKGAKSFDVVTC 118
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 224 |
| >gnl|CDD|234248 TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Score = 48.2 bits (116), Expect = 2e-06
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 9/78 (11%)
Query: 112 EGKVVVDVGCGTGILSI----FCAQAGAKRVYAVDASDIAVQ-ANEVVKANNLTDKVIVL 166
V+D+G G+G +++ A RV AVD S A+ A + L D V L
Sbjct: 87 GPLRVLDLGTGSGAIALALAKERPDA---RVTAVDISPEALAVARKNAARLGL-DNVEFL 142
Query: 167 HGRVEDVEIDEEVDVIIS 184
+ + D+I+S
Sbjct: 143 QSDWFEPLPGGKFDLIVS 160
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3 [Protein fate, Protein modification and repair]. Length = 251 |
| >gnl|CDD|225318 COG2520, COG2520, Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 4e-06
Identities = 38/121 (31%), Positives = 58/121 (47%), Gaps = 13/121 (10%)
Query: 97 TETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQ-ANEVVK 155
TE R A + EG+ V+D+ G G SI A+ G +VYA+D + AV+ E ++
Sbjct: 177 TERARVA----ELVKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIR 232
Query: 156 ANNLTDKVIVLHGRVEDVEIDEEV-DVIISEWMGYMLLYESMLGSVITARDRWLKRGGLI 214
N + +V + G +V + V D II M L +S + A + LK GG+I
Sbjct: 233 LNKVEGRVEPILGDAREVAPELGVADRII------MGLPKSAHEFLPLALEL-LKDGGII 285
Query: 215 L 215
Sbjct: 286 H 286
|
Length = 341 |
| >gnl|CDD|234740 PRK00377, cbiT, cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 6e-06
Identities = 37/153 (24%), Positives = 69/153 (45%), Gaps = 21/153 (13%)
Query: 81 YAHVGI-HEEMIKDR---VRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQ-AGA 135
Y GI EE +D + E RA + +G +++D+GCGTG +++ + G
Sbjct: 5 YVIPGIPDEEFERDEEIPMTKEEIRALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGE 64
Query: 136 K-RVYAVDASDIAVQANEVVKAN----NLTDKVIVLHGRVEDV--EIDEEVDVIISEWMG 188
+VYAVD + A+ + + N + + ++++ G ++ I+E+ D I
Sbjct: 65 TGKVYAVDKDEKAI---NLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGGGS 121
Query: 189 YMLLYESMLGSVITARDRWLKRGGLILPSYATL 221
L +I+A +K+GG I+ L
Sbjct: 122 ------EKLKEIISASWEIIKKGGRIVIDAILL 148
|
Length = 198 |
| >gnl|CDD|234637 PRK00107, gidB, 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Score = 45.5 bits (109), Expect = 1e-05
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 11/83 (13%)
Query: 108 QSFIEGKVVVDVGCGTG----ILSIFCAQAGAKRVYAVDASD--IAVQANEVVKANNLTD 161
G+ V+DVG G G L+I + +V VD+ IA EV L +
Sbjct: 41 PYLPGGERVLDVGSGAGFPGIPLAIARPE---LKVTLVDSLGKKIAFL-REVAAELGLKN 96
Query: 162 KVIVLHGRVEDVEIDEEVDVIIS 184
V V+HGR E+ +E+ DV+ S
Sbjct: 97 -VTVVHGRAEEFGQEEKFDVVTS 118
|
Length = 187 |
| >gnl|CDD|225139 COG2230, Cfa, Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 2e-05
Identities = 29/110 (26%), Positives = 45/110 (40%), Gaps = 14/110 (12%)
Query: 112 EGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQ-ANEVVKANNLTDKV-IVLHGR 169
G ++D+GCG G L+I+ A+ V V S+ + A + + A L D V + L
Sbjct: 72 PGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQD- 130
Query: 170 VEDVEIDEEVDVIIS----EWMGYMLLYESMLGSVITARDRWLKRGGLIL 215
+ +E D I+S E +G LK GG +L
Sbjct: 131 --YRDFEEPFDRIVSVGMFEHVGK-----ENYDDFFKKVYALLKPGGRML 173
|
Length = 283 |
| >gnl|CDD|223813 COG0742, COG0742, N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 2e-05
Identities = 26/82 (31%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Query: 92 KDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQA- 150
DRVR E + IEG V+D+ G+G L + GA RV V+ AV+
Sbjct: 26 TDRVR-EALFNILAP--DEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKIL 82
Query: 151 NEVVKANNLTDKVIVLHGRVED 172
E +KA L + VL
Sbjct: 83 KENLKALGLEGEARVLRNDALR 104
|
Length = 187 |
| >gnl|CDD|215319 PLN02585, PLN02585, magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 4e-05
Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 12/54 (22%)
Query: 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDI--------AVQANEVVKA 156
+ G V D GCGTG L+I A GA V ASDI +A E + A
Sbjct: 143 LAGVTVCDAGCGTGSLAIPLALEGA----IVSASDISAAMVAEAERRAKEALAA 192
|
Length = 315 |
| >gnl|CDD|225151 COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 4e-05
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 112 EGKVVVDVGCGTGILSIFCAQAGAK-RVYAVDASDIAVQANEVVKANNLTDKVIVLHGRV 170
G + D+G GTG ++I A AG RV A++ + A++ E A D + V+ G
Sbjct: 34 PGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDA 93
Query: 171 EDVEIDE-EVDVI 182
+ D D I
Sbjct: 94 PEALPDLPSPDAI 106
|
Length = 187 |
| >gnl|CDD|184931 PRK14967, PRK14967, putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 9e-05
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 102 AAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQANEVVKANNLTD 161
A + + G+ V+D+ G+G L++ A AGA V AVD S AV++ + D
Sbjct: 26 ADALAAEGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVD 85
Query: 162 KVIVLHGRVEDVEIDEEVDVIIS 184
V V G DV++S
Sbjct: 86 -VDVRRGDWARAVEFRPFDVVVS 107
|
Length = 223 |
| >gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 43.7 bits (100), Expect = 9e-05
Identities = 36/263 (13%), Positives = 81/263 (30%), Gaps = 16/263 (6%)
Query: 63 DRKPATPCTDFDVAYFHSYAHVGIHEEMIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCG 122
D + + + A + ++ + + +++ G V+D+GCG
Sbjct: 1 DSLLSAELLSRILELYDRLAELLDAFLLLAEELLDLLLVLRLLRLLP--GGLGVLDIGCG 58
Query: 123 TGILSIFCAQAGAK-RVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDVEID----E 177
TG L++ G V VD S + V + +
Sbjct: 59 TGRLALLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSA 118
Query: 178 EVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESID 237
D++IS + ++L L ++ R LK GG ++ + + R + +
Sbjct: 119 SFDLVISLLVLHLLPPAKALRELL----RVLKPGGRLV---LSDLLRDGLLEGRLAALLG 171
Query: 238 FWRNVYGIDMSAMM--PLAKQCAFEEPSVETITGENVLTWPHVVKHVDCYTIQIHELESI 295
F V + L + + + + GE L + + ++ + + L
Sbjct: 172 FGDPVLERGDILLELEALLRLELLDLEELLGLLGELELERGGLARLLEELRLLLELLALG 231
Query: 296 ATTFKFKSMMRAPLHGFAFWFDV 318
F+ ++
Sbjct: 232 LEARGFRLLLLLKGARELVIRAR 254
|
Length = 257 |
| >gnl|CDD|235350 PRK05134, PRK05134, bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 1e-04
Identities = 36/114 (31%), Positives = 54/114 (47%), Gaps = 23/114 (20%)
Query: 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQANEVVKANNLTDKVIV--LHG 168
+ GK V+DVGCG GILS A+ GA V +DAS+ + EV + + L + +
Sbjct: 47 LFGKRVLDVGCGGGILSESMARLGAD-VTGIDASEENI---EVARLHALESGLKIDYRQT 102
Query: 169 RVEDV--EIDEEVDVIISEWMGYMLLYESML------GSVITARDRWLKRGGLI 214
E++ E + DV+ M E ML S + A + +K GGL+
Sbjct: 103 TAEELAAEHPGQFDVVTC--M------E-MLEHVPDPASFVRACAKLVKPGGLV 147
|
Length = 233 |
| >gnl|CDD|236059 PRK07580, PRK07580, Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 1e-04
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Query: 113 GKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS----DIAVQ-ANEVVKANNLT 160
G ++D GCG G LSI A+ GA +V A D S + A + A E A N+T
Sbjct: 64 GLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGLAGNIT 115
|
Length = 230 |
| >gnl|CDD|225317 COG2519, GCD14, tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 1e-04
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
Query: 102 AAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAK--RVYAVDA-SDIAVQANEVVKANN 158
I+ G V++ G G+G L+ + A+A V + D A A E +
Sbjct: 84 GYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFG 143
Query: 159 LTDKVIVLHGRVEDVEIDEEVDVII 183
L D+V + G V + +E+VD +
Sbjct: 144 LGDRVTLKLGDVREGIDEEDVDAVF 168
|
Length = 256 |
| >gnl|CDD|217086 pfam02527, GidB, rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 1e-04
Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 26/100 (26%)
Query: 116 VVDVGCGTG----ILSIFCAQAGAKRVYAVDASDIAVQ-ANEVVKANNLTDKVIVLHGRV 170
V DVG G G L+I K++ +++ + E+ K NL + V ++H R
Sbjct: 52 VADVGSGAGFPGIPLAIAFPD---KKLTLLESLLKKINFLEELKKELNL-ENVTIVHARA 107
Query: 171 EDVEIDEEVDVIIS----------EWM-------GYMLLY 193
E+ + +E+ DVI S EW GY L Y
Sbjct: 108 EEYQHEEQYDVITSRAVASLNELTEWALPLLKPGGYFLAY 147
|
This is a family of bacterial glucose inhibited division proteins these are probably involved in the regulation of cell devision. GidB has been shown to be a methyltransferase G specific to the rRNA small subunit. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. GidB specifically methylates the N7 position of a guanosine in 16S rRNA. Length = 184 |
| >gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 1e-04
Identities = 29/106 (27%), Positives = 45/106 (42%), Gaps = 16/106 (15%)
Query: 117 VDVGCGTGILSIFCAQAGA-KRVYAVDASDIAV-QANEVVKANNLTDKVIVLHGRVEDVE 174
+D+GCGTG L +A VD S A+ A E + A L D V V V D
Sbjct: 1 LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRV-RLDVLDAI 59
Query: 175 IDEE--VDVIIS----EWMGYMLLYESMLGSVITARDRWLKRGGLI 214
+ DV+++ + ++L ++ R LK GG++
Sbjct: 60 DLDPGSFDVVVASNVLHHLADP---RAVLRNL----RRLLKPGGVL 98
|
Members of this family are SAM dependent methyltransferases. Length = 98 |
| >gnl|CDD|202698 pfam03602, Cons_hypoth95, Conserved hypothetical protein 95 | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 3e-04
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 5/65 (7%)
Query: 93 DRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQANE 152
DRVR E I+ I G V+D+ G+G L + GA V V+ AV
Sbjct: 26 DRVR-EAL-FNILAPYFEIGGARVLDLFAGSGALGLEALSRGAASVVFVEKDKKAVA--- 80
Query: 153 VVKAN 157
+K N
Sbjct: 81 TLKEN 85
|
Length = 183 |
| >gnl|CDD|129544 TIGR00452, TIGR00452, tRNA (mo5U34)-methyltransferase | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 4e-04
Identities = 38/165 (23%), Positives = 75/165 (45%), Gaps = 16/165 (9%)
Query: 104 IMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAV-QANEVVKANNLTDK 162
++ + S ++G+ ++DVGCG+G GAK + +D + + + Q V K + +
Sbjct: 113 VLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKR 172
Query: 163 VIVLHGRVEDVEIDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYA--- 219
I+ +E + D + S MG + +S L + + + + +G L+L +
Sbjct: 173 AILEPLGIEQLHELYAFDTVFS--MGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVIDG 230
Query: 220 --TLYMAPVTHPDRYSESIDFWRNVYGI-DMSAMMPLAKQCAFEE 261
+ P DRY++ +NVY I +SA+ ++ FE
Sbjct: 231 DLNTVLVP---KDRYAK----MKNVYFIPSVSALKNWLEKVGFEN 268
|
This model describes a set of proteins with homology in its central region to a large number of methyltransferases active on a variety of substrates. The similarity includes a motif resembling ILDVGCG[SG]G. Known examples to date are restricted to the proteobacteria [Unknown function, Enzymes of unknown specificity]. Length = 314 |
| >gnl|CDD|224110 COG1189, COG1189, Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 5e-04
Identities = 17/33 (51%), Positives = 22/33 (66%)
Query: 110 FIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVD 142
++GKVV+D+G TG + Q GAK VYAVD
Sbjct: 77 DVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVD 109
|
Length = 245 |
| >gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 5e-04
Identities = 27/106 (25%), Positives = 43/106 (40%), Gaps = 21/106 (19%)
Query: 112 EGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVE 171
G V+D+GCGTGIL + G V VD S AV + A +
Sbjct: 22 PGGRVLDIGCGTGILLRLLRERG-FDVTGVDPSPAAVLIFSLFDAPDPAVL--------- 71
Query: 172 DVEIDEEVDVIISEWMGYMLLYESM--LGSVITARDRWLKRGGLIL 215
+ D+I + + +L E + +++ LK GG++L
Sbjct: 72 ----AGKYDLITA----FEVL-EHLPDPPALLQQLRELLKPGGVLL 108
|
This family appears to be a methyltransferase domain. Length = 154 |
| >gnl|CDD|129627 TIGR00536, hemK_fam, HemK family putative methylases | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 6e-04
Identities = 25/112 (22%), Positives = 46/112 (41%), Gaps = 20/112 (17%)
Query: 87 HEEMIKDRV---RTET-------YRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAK 136
E + + V R ET + I QN ++D+G G+G +++ A
Sbjct: 83 LEFFVNEHVLIPRPETEELVEKALASLISQNPI----LHILDLGTGSGCIALALAYEFPN 138
Query: 137 RVYAVDASDIAVQANEVVKAN----NLTDKVIVLHGRVEDVEIDEEVDVIIS 184
V A DI+ A V + N L +V + + + +++D+I+S
Sbjct: 139 --AEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVS 188
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain [Protein fate, Protein modification and repair]. Length = 284 |
| >gnl|CDD|211555 TIGR00138, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase GidB | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 7e-04
Identities = 31/130 (23%), Positives = 56/130 (43%), Gaps = 28/130 (21%)
Query: 110 FIEGKVVVDVGCGTG----ILSIFCAQAGAKRVYAVDASDIAVQ-ANEVVKANNLTDKVI 164
+++GK V+D+G G G L+I + ++ ++++ V EV L + V
Sbjct: 40 YLDGKRVIDIGSGAGFPGIPLAIARPE---LKLTLLESNHKKVAFLREVKAELGLNN-VE 95
Query: 165 VLHGRVEDVEIDEEVDVIIS----------EWM-------GYMLLY--ESMLGSVITARD 205
+++GR ED + +E+ D+I S E GY L Y + L + A+
Sbjct: 96 IVNGRAEDFQHEEQFDIITSRALASLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKR 155
Query: 206 RWLKRGGLIL 215
+ G L
Sbjct: 156 KCQVLGVEPL 165
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA [Protein synthesis, tRNA and rRNA base modification]. Length = 181 |
| >gnl|CDD|218484 pfam05185, PRMT5, PRMT5 arginine-N-methyltransferase | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 8e-04
Identities = 64/269 (23%), Positives = 109/269 (40%), Gaps = 71/269 (26%)
Query: 92 KDRVRTETYRAAIMQ---------NQSFIEGKVVVDVGCGTGIL---SIFCAQ-AGAK-R 137
KD V+ + Y AI + ++ ++V VG G G L ++ A+ G K +
Sbjct: 158 KDPVKYDQYERAIRKALLDRVPEKKKTSSTLVILV-VGAGRGPLVDRALKAAEETGRKVK 216
Query: 138 VYAVDASDIAVQANEVV---KANNLT--DKVIVLHGRVEDVEIDEEVDVIISEWMGYM-- 190
+YAV+ + AV V + N DKV ++ + + + E+ D+++SE +G
Sbjct: 217 IYAVEKNPNAV----VTLQKRVNFEEWGDKVTIISSDMREWKGPEKADILVSELLGSFGD 272
Query: 191 --LLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNV-----Y 243
L E + G+ R+LK G+ +P T Y+AP++ P Y + Y
Sbjct: 273 NELSPECLDGA-----QRFLKPDGISIPQSYTSYLAPISSPKLYQKVKSMSDPKAFETPY 327
Query: 244 GIDMSAMMPLA---KQC-AFEEPSVETITGENVLTWPHVVKHVDCYTIQIHELESIATTF 299
+ + + L+ ++C +FE P+ + H T
Sbjct: 328 VVRLKSYYKLSEEVQECWSFEHPNRDEN---------------------SH--NERYKTL 364
Query: 300 KFKSMMRAPLHGFAFWF------DVEFST 322
+FK LHGFA +F DVE S
Sbjct: 365 EFKIKHDGVLHGFAGYFDAVLYKDVELSI 393
|
The human homologue of yeast Skb1 (Shk1 kinase-binding protein 1) is PRMT5, an arginine-N-methyltransferase. These proteins appear to be key mitotic regulators. They play a role in Jak signalling in higher eukaryotes. Length = 445 |
| >gnl|CDD|129570 TIGR00478, tly, hemolysin TlyA family protein | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 9e-04
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 110 FIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS 144
++ K+V+DVG TG + Q GAK VY VD
Sbjct: 73 DVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVG 107
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479) [Unknown function, General]. Length = 228 |
| >gnl|CDD|233687 TIGR02021, BchM-ChlM, magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.001
Identities = 31/84 (36%), Positives = 45/84 (53%), Gaps = 8/84 (9%)
Query: 73 FDVAYFHSYAHV-GIHEEMIKDRVRTETYRAAIMQN------QSFIEGKVVVDVGCGTGI 125
FD F +A + G + + + R RAA+ + + ++GK V+D GCGTG+
Sbjct: 9 FDGTAFQRWARIYGSGDPVSRVRQTVREGRAAMRRKLLDWLPKDPLKGKRVLDAGCGTGL 68
Query: 126 LSIFCAQAGAKRVYAVDASDIAVQ 149
LSI A+ GA V AVD S+ VQ
Sbjct: 69 LSIELAKRGA-IVKAVDISEQMVQ 91
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 219 |
| >gnl|CDD|177970 PLN02336, PLN02336, phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.001
Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 3/105 (2%)
Query: 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRV 170
EGK V+++G G G + A+ A +V A+D + ++ NE + + K +
Sbjct: 36 YEGKSVLELGAGIGRFTGELAKK-AGQVIALDFIESVIKKNESINGHYKNVKFMCADVTS 94
Query: 171 EDVEI-DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLI 214
D+ I D VD+I S W+ M L + + ++ +WLK GG I
Sbjct: 95 PDLNISDGSVDLIFSNWL-LMYLSDKEVENLAERMVKWLKVGGYI 138
|
Length = 475 |
| >gnl|CDD|216666 pfam01728, FtsJ, FtsJ-like methyltransferase | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.001
Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Query: 113 GKVVVDVGCGTGILSIFCAQAG-AKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVE 171
GK V+D+G G S + G A +V AVD + ++TD ++
Sbjct: 23 GKTVLDLGAAPGGFSQVLLERGGAGKVVAVDLGPMEPIQGVYFLRGDITDPET--LEKLR 80
Query: 172 DVEIDEEVDVIIS 184
+ + +VD+++S
Sbjct: 81 E-LLPGKVDLVLS 92
|
This family consists of FtsJ from various bacterial and archaeal sources FtsJ is a methyltransferase, but actually has no effect on cell division. FtsJ's substrate is the 23S rRNA. The 1.5 A crystal structure of FtsJ in complex with its cofactor S-adenosylmethionine revealed that FtsJ has a methyltransferase fold. This family also includes the N terminus of flaviviral NS5 protein. It has been hypothesised that the N-terminal domain of NS5 is a methyltransferase involved in viral RNA capping. Length = 177 |
| >gnl|CDD|225174 COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.002
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
Query: 113 GKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQ-ANEVVKANNLTDKVIVLHGRVE 171
G+ V+D+ CG G + A+ K+V+ V+ S AV+ A E AN + D V + G E
Sbjct: 294 GERVLDLYCGVGTFGLPLAK-RVKKVHGVEISPEAVEAAQENAAANGI-DNVEFIAGDAE 351
Query: 172 DV----EIDEEVDVII 183
+ + DV++
Sbjct: 352 EFTPAWWEGYKPDVVV 367
|
Length = 432 |
| >gnl|CDD|226413 COG3897, COG3897, Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Score = 38.6 bits (90), Expect = 0.003
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQANEV-VKANNLTDKVIVLHGR 169
+ GK V+D+G G+G+++I A+AGA V A D QA + AN V +L
Sbjct: 78 VRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANG----VSILFTH 133
Query: 170 VEDVEIDEEVDVII 183
+ + D+++
Sbjct: 134 ADLIGSPPAFDLLL 147
|
Length = 218 |
| >gnl|CDD|233415 TIGR01444, fkbM_fam, methyltransferase, FkbM family | Back alignment and domain information |
|---|
Score = 37.3 bits (87), Expect = 0.004
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 115 VVVDVGCGTGILSIFCAQAGAK-RVYAVDAS-DIAVQANEVVKANNLTDKVIVLH 167
VV+DVG G S++ A+ GA+ RV A + D E VK NNL V++L+
Sbjct: 1 VVIDVGANIGDFSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNL-PNVVLLN 54
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. Length = 144 |
| >gnl|CDD|234247 TIGR03533, L3_gln_methyl, protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 0.004
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 12/76 (15%)
Query: 116 VVDVGCGTGILSIFCAQA--GAKRVYAVDASDIAVQANEVVKAN----NLTDKVIVLHGR 169
++D+ G+G ++I CA A A+ VDA DI+ A V + N L D+V ++
Sbjct: 125 ILDLCTGSGCIAIACAYAFPEAE----VDAVDISPDALAVAEINIERHGLEDRVTLIQSD 180
Query: 170 V-EDVEIDEEVDVIIS 184
+ + + D+I+S
Sbjct: 181 LFAALP-GRKYDLIVS 195
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 284 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 428 | |||
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 100.0 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 100.0 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 100.0 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 99.93 | |
| PTZ00357 | 1072 | methyltransferase; Provisional | 99.87 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 99.83 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.79 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.78 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.77 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.76 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.74 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.74 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.74 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.73 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.73 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.72 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.72 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.72 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.69 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.69 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.69 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.64 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.64 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.63 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.62 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.62 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.62 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.62 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.61 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.61 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.6 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.6 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.59 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.59 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.58 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.57 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.57 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.56 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.56 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.56 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.55 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.54 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.53 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.53 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.52 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.52 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.52 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.51 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.5 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.5 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.48 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.48 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.47 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.47 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.47 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.47 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.47 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.47 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.46 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.46 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.45 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.45 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.44 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.44 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.43 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.42 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.41 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.4 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.39 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.39 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.39 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.39 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.38 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.38 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.38 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.37 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 99.36 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.36 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.36 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.35 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.35 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.33 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.31 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.31 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 99.31 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.31 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 99.3 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.3 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.3 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.29 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.29 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.29 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.29 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.29 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.29 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.29 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 99.29 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.29 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.27 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.27 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.27 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.27 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 99.26 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 99.26 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.25 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.24 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.22 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.22 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.22 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.21 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 99.21 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 99.2 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 99.2 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 99.19 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 99.19 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.18 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 99.17 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 99.17 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 99.17 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.17 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.17 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 99.17 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 99.17 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 99.17 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 99.15 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.15 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 99.15 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.14 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.14 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 99.14 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 99.14 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.14 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.13 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 99.11 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 99.11 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 99.1 | |
| PLN02476 | 278 | O-methyltransferase | 99.1 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 99.07 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 99.07 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 99.06 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 99.06 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 99.06 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 99.05 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 99.05 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 99.04 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.03 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 99.03 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 99.02 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 99.02 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 99.02 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.0 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 99.0 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.99 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 98.98 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.98 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 98.98 | |
| PLN02366 | 308 | spermidine synthase | 98.96 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 98.96 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 98.95 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 98.94 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 98.92 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 98.92 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.91 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 98.91 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 98.91 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 98.89 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.88 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 98.87 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.86 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 98.83 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 98.83 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 98.83 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.82 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.82 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 98.81 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.79 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.78 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.78 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 98.76 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 98.76 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 98.75 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.75 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 98.73 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 98.72 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.71 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 98.7 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.68 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 98.67 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 98.67 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.65 | |
| PLN02823 | 336 | spermine synthase | 98.6 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 98.59 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 98.57 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.55 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 98.54 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 98.54 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 98.54 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 98.53 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.52 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 98.51 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 98.5 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 98.48 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 98.45 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.45 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 98.43 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 98.43 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 98.42 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 98.41 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 98.4 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 98.4 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 98.39 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.37 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.36 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 98.36 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 98.36 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 98.35 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 98.35 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 98.32 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 98.27 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 98.24 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.15 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 98.13 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 98.12 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 98.11 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 98.11 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 98.08 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 98.06 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 98.04 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 98.02 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 98.02 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 98.01 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 97.97 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 97.93 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 97.92 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 97.91 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 97.9 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 97.89 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 97.88 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 97.88 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 97.85 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 97.85 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 97.83 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 97.8 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 97.8 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 97.75 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 97.75 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 97.7 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 97.67 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 97.63 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 97.59 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 97.58 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 97.56 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 97.46 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 97.44 | |
| PHA01634 | 156 | hypothetical protein | 97.38 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 97.37 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 97.35 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 97.28 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 97.17 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 97.15 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 97.14 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 97.03 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 96.79 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 96.77 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 96.77 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 96.77 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 96.73 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 96.71 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 96.71 | |
| KOG1227 | 351 | consensus Putative methyltransferase [General func | 96.68 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 96.37 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 96.36 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 96.09 | |
| KOG2920 | 282 | consensus Predicted methyltransferase [General fun | 96.08 | |
| KOG2671 | 421 | consensus Putative RNA methylase [Replication, rec | 96.07 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 95.93 | |
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 95.92 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 95.72 | |
| TIGR00027 | 260 | mthyl_TIGR00027 methyltransferase, putative, TIGR0 | 95.67 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 95.67 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 95.63 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 95.61 | |
| KOG1253 | 525 | consensus tRNA methyltransferase [Translation, rib | 95.5 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 95.45 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 95.33 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 95.32 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 95.19 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 95.01 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 94.78 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 94.62 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 94.47 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 94.39 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 94.05 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 93.95 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 93.87 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 93.63 | |
| PF05711 | 248 | TylF: Macrocin-O-methyltransferase (TylF); InterPr | 93.6 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 93.54 | |
| KOG3924 | 419 | consensus Putative protein methyltransferase invol | 93.27 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 93.18 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 93.14 | |
| PF07279 | 218 | DUF1442: Protein of unknown function (DUF1442); In | 93.11 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 92.76 | |
| PRK13699 | 227 | putative methylase; Provisional | 92.68 | |
| COG1568 | 354 | Predicted methyltransferases [General function pre | 92.59 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 92.52 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 92.38 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 91.82 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 91.66 | |
| KOG2651 | 476 | consensus rRNA adenine N-6-methyltransferase [RNA | 91.66 | |
| KOG2078 | 495 | consensus tRNA modification enzyme [RNA processing | 91.4 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 91.3 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 91.14 | |
| PF05206 | 259 | TRM13: Methyltransferase TRM13; InterPro: IPR00787 | 91.11 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 90.89 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 90.89 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 90.88 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 90.72 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 90.59 | |
| PF00145 | 335 | DNA_methylase: C-5 cytosine-specific DNA methylase | 90.5 | |
| PF02636 | 252 | Methyltransf_28: Putative S-adenosyl-L-methionine- | 90.39 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 90.28 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 89.99 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 89.58 | |
| PLN02740 | 381 | Alcohol dehydrogenase-like | 89.5 | |
| PF04072 | 183 | LCM: Leucine carboxyl methyltransferase; InterPro: | 89.08 | |
| TIGR00675 | 315 | dcm DNA-methyltransferase (dcm). All proteins in t | 88.86 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 88.69 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 88.1 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 87.93 | |
| cd08232 | 339 | idonate-5-DH L-idonate 5-dehydrogenase. L-idonate | 87.37 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 87.25 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 87.04 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 86.88 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 86.81 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 86.78 | |
| PLN02827 | 378 | Alcohol dehydrogenase-like | 86.38 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 86.22 | |
| TIGR02818 | 368 | adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr | 85.96 | |
| PRK05854 | 313 | short chain dehydrogenase; Provisional | 85.65 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 84.79 | |
| PF05430 | 124 | Methyltransf_30: S-adenosyl-L-methionine-dependent | 84.65 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 84.51 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 84.47 | |
| COG1565 | 370 | Uncharacterized conserved protein [Function unknow | 84.41 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 84.38 | |
| PF10237 | 162 | N6-adenineMlase: Probable N6-adenine methyltransfe | 84.16 | |
| COG3510 | 237 | CmcI Cephalosporin hydroxylase [Defense mechanisms | 84.14 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 84.12 | |
| cd08285 | 351 | NADP_ADH NADP(H)-dependent alcohol dehydrogenases. | 84.07 | |
| cd08278 | 365 | benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be | 83.76 | |
| KOG1201 | 300 | consensus Hydroxysteroid 17-beta dehydrogenase 11 | 83.76 | |
| COG0270 | 328 | Dcm Site-specific DNA methylase [DNA replication, | 83.65 | |
| cd05278 | 347 | FDH_like Formaldehyde dehydrogenases. Formaldehyde | 83.39 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 83.3 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 83.3 | |
| cd08277 | 365 | liver_alcohol_DH_like Liver alcohol dehydrogenase. | 83.23 | |
| KOG0022 | 375 | consensus Alcohol dehydrogenase, class III [Second | 82.88 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 82.41 | |
| TIGR02819 | 393 | fdhA_non_GSH formaldehyde dehydrogenase, glutathio | 82.4 | |
| cd08300 | 368 | alcohol_DH_class_III class III alcohol dehydrogena | 82.32 | |
| cd05285 | 343 | sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a | 82.3 | |
| COG1255 | 129 | Uncharacterized protein conserved in archaea [Func | 82.23 | |
| cd08236 | 343 | sugar_DH NAD(P)-dependent sugar dehydrogenases. Th | 82.19 | |
| PF06460 | 299 | NSP13: Coronavirus NSP13; InterPro: IPR009461 This | 82.18 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 81.48 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 81.27 | |
| KOG0821 | 326 | consensus Predicted ribosomal RNA adenine dimethyl | 81.25 | |
| COG2933 | 358 | Predicted SAM-dependent methyltransferase [General | 81.12 | |
| cd08293 | 345 | PTGR2 Prostaglandin reductase. Prostaglandins and | 81.06 | |
| PRK13699 | 227 | putative methylase; Provisional | 81.03 | |
| cd08294 | 329 | leukotriene_B4_DH_like 13-PGR is a bifunctional en | 81.0 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 81.0 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 80.98 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 80.97 | |
| cd08261 | 337 | Zn_ADH7 Alcohol dehydrogenases of the MDR family. | 80.89 | |
| PRK10458 | 467 | DNA cytosine methylase; Provisional | 80.6 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 80.47 | |
| cd08231 | 361 | MDR_TM0436_like Hypothetical enzyme TM0436 resembl | 80.35 | |
| cd08234 | 334 | threonine_DH_like L-threonine dehydrogenase. L-thr | 80.16 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 80.16 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 80.07 |
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-60 Score=443.84 Aligned_cols=311 Identities=49% Similarity=0.840 Sum_probs=295.3
Q ss_pred hhhHHHhhhccchhhhhhccChhhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeChHHHHHHHH
Q 014247 73 FDVAYFHSYAHVGIHEEMIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQANE 152 (428)
Q Consensus 73 ~~~~~f~~y~~~~~~~~~~~d~~r~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s~~~~~a~~ 152 (428)
.+..||.+|+++++|++|++|..|+.+|+.+|..+....++++|||||||+|.+++.+|++|+++|+|+|.|.+++.|++
T Consensus 21 ~~~~Yf~sY~~~~iheeML~D~VRt~aYr~~i~~n~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~~a~~ 100 (346)
T KOG1499|consen 21 SDDYYFDSYAHFGIHEEMLKDSVRTLAYRNAILQNKHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIADFARK 100 (346)
T ss_pred hhhhhhhhhhchHHHHHHHhhhhhHHHHHHHHhcchhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHCCCCCcEEEEEcccccccCC-CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccc
Q 014247 153 VVKANNLTDKVIVLHGRVEDVEID-EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDR 231 (428)
Q Consensus 153 ~~~~~~~~~~v~~~~~d~~~l~~~-~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~ 231 (428)
.+..|++++.|+++++.++++.+| +++|+|+|+|||+++.++.+++.+|.+..++|+|||.++|+.++++++++.....
T Consensus 101 iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P~~a~l~l~~i~d~~~ 180 (346)
T KOG1499|consen 101 IVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYPDRATLYLAAIEDDSY 180 (346)
T ss_pred HHHhcCccceEEEeecceEEEecCccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEccccceEEEEeccCchh
Confidence 999999999999999999999888 9999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhccCCCCcchhHHHHHhcCCCCceEEeecCCccccCCeeEEEEeCCCCCcccccceeeeeEEEEeeccceeE
Q 014247 232 YSESIDFWRNVYGIDMSAMMPLAKQCAFEEPSVETITGENVLTWPHVVKHVDCYTIQIHELESIATTFKFKSMMRAPLHG 311 (428)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~~~~~~ls~p~~~~~~d~~~~~~~~l~~~~~~~~~~~~~~g~~~g 311 (428)
....+.||.++|||+|+.+..... ..+.++.++++++++.|+.+..+|+.++..+++. +...|++.+.+++.+||
T Consensus 181 ~~~~i~fW~~Vygfdms~~~~~~~----~e~lv~vv~~~~l~t~~~~i~~~Dl~t~~i~d~~-F~s~f~l~v~r~~~i~g 255 (346)
T KOG1499|consen 181 KDDKIGFWDDVYGFDMSCIKKIAI----KEPLVDVVDPEQLLTEPCLIKEFDLYTVKIEDLS-FTSPFKLKVTRNGYLHA 255 (346)
T ss_pred hhhhcCccccccccchhhhhhhhh----cccceeccChhHhcccceeeEEeeeeeeecccee-eccceEEEEccCceEEE
Confidence 888899999999999999987654 3455678899999999999999999999999997 99999999999999999
Q ss_pred EEEEEEeeccCCCCCCCCCCCCCcccCCCCCCCCccccccccCCCCCcEEEecCCCCCCCceeeeEEeeCCccccCCCCE
Q 014247 312 FAFWFDVEFSTPAISPANNHIPPVVVGSSNNHPMDGCQKKKRANPNEALVLSTAPEDPPTHWQQTMIYFYDPIEVEQDQL 391 (428)
Q Consensus 312 ~~~wf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSt~P~~~~thW~q~~~~l~~pi~v~~g~~ 391 (428)
|++||++.|.++.+ ...+.+||+|..++|||||+||+|++|+.|++||.
T Consensus 256 ~v~yFDv~F~~~~~-------------------------------~~~~~fST~P~~p~THWKQtVfyl~~p~~v~~ge~ 304 (346)
T KOG1499|consen 256 FVAYFDVEFTGCHG-------------------------------KKRLGFSTSPSSPYTHWKQTVFYLENPLTVKEGED 304 (346)
T ss_pred EEEEEEEeeccCCC-------------------------------CCcceeecCCCCCCceeeeEEEEecCccceecCce
Confidence 99999999975321 24789999999999999999999999999999999
Q ss_pred EEEEEEEEeCCCCCeeEEEEEEEEECCe
Q 014247 392 IEGSVVLSQSKENARFMNIHLEYASGGR 419 (428)
Q Consensus 392 i~~~~~~~~~~~~~r~~~~~~~~~~~~~ 419 (428)
|.|+|+|++++.|+|.|+|.+.+..+++
T Consensus 305 i~g~it~~~~~~~~R~l~~~l~~~~~~~ 332 (346)
T KOG1499|consen 305 ITGTITMKPNKKNNRDLDISLSLNFKGQ 332 (346)
T ss_pred EEEEEEEeeCCCCCccceEEEEEecCCc
Confidence 9999999999999999999999999988
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-47 Score=348.85 Aligned_cols=311 Identities=39% Similarity=0.662 Sum_probs=282.7
Q ss_pred hhhHHHhhhccchhhhhhccChhhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeChHHHHHHHH
Q 014247 73 FDVAYFHSYAHVGIHEEMIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQANE 152 (428)
Q Consensus 73 ~~~~~f~~y~~~~~~~~~~~d~~r~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s~~~~~a~~ 152 (428)
....||.-|..+....+|+.|..|+..|.++|..+...+.++.|||+|||+|++++.+|++|+++|++||.|+|++.|++
T Consensus 138 SA~~YF~~YG~L~~QQNMmQDYVRTgTY~~Ail~N~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~MAqyA~~ 217 (517)
T KOG1500|consen 138 SASQYFQFYGYLSQQQNMMQDYVRTGTYQRAILENHSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASEMAQYARK 217 (517)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehhHHHHHHHH
Confidence 44679999998888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHCCCCCcEEEEEcccccccCCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccch
Q 014247 153 VVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRY 232 (428)
Q Consensus 153 ~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~ 232 (428)
.++.|.+.++|+++.+.++++.+|+++|+|++++|++++.++.+++..+.+. ++|+|.|.++|+...+.++|+.+..++
T Consensus 218 Lv~~N~~~~rItVI~GKiEdieLPEk~DviISEPMG~mL~NERMLEsYl~Ar-k~l~P~GkMfPT~gdiHlAPFsDE~Ly 296 (517)
T KOG1500|consen 218 LVASNNLADRITVIPGKIEDIELPEKVDVIISEPMGYMLVNERMLESYLHAR-KWLKPNGKMFPTVGDIHLAPFSDEQLY 296 (517)
T ss_pred HHhcCCccceEEEccCccccccCchhccEEEeccchhhhhhHHHHHHHHHHH-hhcCCCCcccCcccceeecccchHHHH
Confidence 9999999999999999999999999999999999999999999999999876 999999999999999999999998887
Q ss_pred hh---hhhhhhc--cCCCCcchhHHHHHhcCCCCceEEeecCCccccCCeeEEEEeCCCCCcccccceeeeeEEEEeecc
Q 014247 233 SE---SIDFWRN--VYGIDMSAMMPLAKQCAFEEPSVETITGENVLTWPHVVKHVDCYTIQIHELESIATTFKFKSMMRA 307 (428)
Q Consensus 233 ~~---~~~~~~~--~~~~~~~~l~~~l~~~Gf~~~~~~~~~~~~~ls~p~~~~~~d~~~~~~~~l~~~~~~~~~~~~~~g 307 (428)
.+ ...||.. .||.|++.+.....+.-|..|.++.++..-+... .....+||.....+++.++.-+++|.+...|
T Consensus 297 ~E~~nkAnFWyQq~fyGVdLt~L~g~a~~eYFrQPvVDtFD~RilmA~-sv~h~~dF~~~kEedlh~i~iPlkF~~~~~g 375 (517)
T KOG1500|consen 297 VEQFNKANFWYQQNFYGVDLTPLYGSAHQEYFRQPVVDTFDIRILMAK-SVFHVIDFLNMKEEDLHEIDIPLKFHALQCG 375 (517)
T ss_pred HHHHhhhhhhhhhccccccchhhhhhhhhhhhccccccccccceeecc-chHhhhhhhhcccchheeecccceehhhhhc
Confidence 65 3567864 7899999998888888899999999887655444 4567889999999999988899999999999
Q ss_pred ceeEEEEEEEeeccCCCCCCCCCCCCCcccCCCCCCCCccccccccCCCCCcEEEecCCCCCCCceeeeEEeeCCccccC
Q 014247 308 PLHGFAFWFDVEFSTPAISPANNHIPPVVVGSSNNHPMDGCQKKKRANPNEALVLSTAPEDPPTHWQQTMIYFYDPIEVE 387 (428)
Q Consensus 308 ~~~g~~~wf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSt~P~~~~thW~q~~~~l~~pi~v~ 387 (428)
.+||+++|||+.|.|. .-.+++||+|.+|.|||-|..++|..||.|+
T Consensus 376 ~iHGLAfWFDV~F~GS---------------------------------~~~~wlsTap~apltHwyqvrCll~~Pi~v~ 422 (517)
T KOG1500|consen 376 RIHGLAFWFDVLFDGS---------------------------------TVQVWLSTAPTAPLTHWYQVRCLLSQPIFVK 422 (517)
T ss_pred ceeeeeeEEEEEeccc---------------------------------eEEEccCCCCCCCcccceeeeeeccCchhhh
Confidence 9999999999999862 2368999999999999999999999999999
Q ss_pred CCCEEEEEEEEEeCCCCCeeEEEEEEEEECC
Q 014247 388 QDQLIEGSVVLSQSKENARFMNIHLEYASGG 418 (428)
Q Consensus 388 ~g~~i~~~~~~~~~~~~~r~~~~~~~~~~~~ 418 (428)
+||+|+|.+.+..+......++|.+++..-.
T Consensus 423 aGq~ltGr~~LiA~~~QSY~i~i~l~~~~~l 453 (517)
T KOG1500|consen 423 AGQTLTGRLLLIANSRQSYDITITLSAKMTL 453 (517)
T ss_pred cCCeeeeeEEEEEccccceeEEEEEEeeeee
Confidence 9999999999999888777777777765443
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=330.99 Aligned_cols=275 Identities=33% Similarity=0.520 Sum_probs=219.8
Q ss_pred hhhhhhccChhhHHHHHHHHHhccCCC--------CCCEEEEEcCCCcHHHHHHHHcC-----CCeEEEEeCh-HHHHHH
Q 014247 85 GIHEEMIKDRVRTETYRAAIMQNQSFI--------EGKVVVDVGCGTGILSIFCAQAG-----AKRVYAVDAS-DIAVQA 150 (428)
Q Consensus 85 ~~~~~~~~d~~r~~~~~~~i~~~~~~~--------~~~~VLDiGcGtG~ls~~la~~g-----~~~V~giD~s-~~~~~a 150 (428)
..|+.+.+|..++..|.++|.+++... ++++|||||||+|.|+..+++++ +.+|+|||.| ......
T Consensus 151 ~tYe~fE~D~vKY~~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l 230 (448)
T PF05185_consen 151 QTYEVFEKDPVKYDQYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTL 230 (448)
T ss_dssp HHHHHHCC-HHHHHHHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHH
T ss_pred ccHhhHhcCHHHHHHHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHH
Confidence 467888999999999999998775321 35789999999999999998875 5799999999 555555
Q ss_pred HHHHHHCCCCCcEEEEEcccccccCCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCcc
Q 014247 151 NEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPD 230 (428)
Q Consensus 151 ~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~ 230 (428)
+++++.+++.++|+++++|++++..++++|+||||+||+++.++. .+++|.++.++|||||+++|+.++.|++|+..+.
T Consensus 231 ~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSElLGsfg~nEl-~pE~Lda~~rfLkp~Gi~IP~~~t~ylaPiss~~ 309 (448)
T PF05185_consen 231 QKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSELLGSFGDNEL-SPECLDAADRFLKPDGIMIPSSYTSYLAPISSPK 309 (448)
T ss_dssp HHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE---BTTBTTTS-HHHHHHHGGGGEEEEEEEESSEEEEEEEEEE-HH
T ss_pred HHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEeccCCcccccc-CHHHHHHHHhhcCCCCEEeCcchhhEEEEeeCHH
Confidence 667789999999999999999999999999999999999988885 5668999999999999999999999999999998
Q ss_pred chhhhhhhhhccCCCCcchhHHHHHhcCCCCceEEeecCCccccCC-eeEEEEeCCCCCc--ccccceeeeeEEEEeecc
Q 014247 231 RYSESIDFWRNVYGIDMSAMMPLAKQCAFEEPSVETITGENVLTWP-HVVKHVDCYTIQI--HELESIATTFKFKSMMRA 307 (428)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~~~~~~ls~p-~~~~~~d~~~~~~--~~l~~~~~~~~~~~~~~g 307 (428)
.+.+...++. ...|+.+.+..+.+...++.+ ..+.+|++.+... ++.......++|.+..+|
T Consensus 310 l~~~~~~~~~---------------~~~~e~pyvv~~~~~~~Ls~~~~~~~~F~hp~~~~~~~~~~~r~~~~~F~i~~~g 374 (448)
T PF05185_consen 310 LYQEVRNWWN---------------PSSFETPYVVHLSPFELLSDPPQPVFTFDHPNPDLPENSDNSRSSELEFKIKRDG 374 (448)
T ss_dssp HHHHHHHHHG---------------HHHHTSSEEE--GGGGBCSCCEEEEEETTTCGGG-GGGGGSEEEEEEEEEBSSSE
T ss_pred HHHHHHhhcc---------------hhhcCCcEEEEccchhhhcCCceEEEEeccCCccccchhhhheeeeEEEeeCCCc
Confidence 8777554442 346788888888888888888 8899999887652 344456789999999999
Q ss_pred ceeEEEEEEEeeccCCCCCCCCCCCCCcccCCCCCCCCccccccccCCCCCcEEEecCCCC----CCCceeeeEEeeCCc
Q 014247 308 PLHGFAFWFDVEFSTPAISPANNHIPPVVVGSSNNHPMDGCQKKKRANPNEALVLSTAPED----PPTHWQQTMIYFYDP 383 (428)
Q Consensus 308 ~~~g~~~wf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSt~P~~----~~thW~q~~~~l~~p 383 (428)
.+|||++||++.|++ +|.|||+|.. +.+||+|++|||++|
T Consensus 375 ~vhGfagwFd~~Ly~------------------------------------~V~LSt~P~~~~s~~~tsW~q~~fpL~~P 418 (448)
T PF05185_consen 375 VVHGFAGWFDAVLYG------------------------------------DVVLSTSPSSAHSPPMTSWFQIFFPLEEP 418 (448)
T ss_dssp EEEEEEEEEEEEEEC------------------------------------SEEEESSTTS---TT--TTEEEEEEEEEE
T ss_pred EEEEEEEEEEEEeeC------------------------------------CeeeecCCCcCCCCCCCeEeEEEEEecCc
Confidence 999999999999974 5999999987 679999999999999
Q ss_pred cccCCCCEEEEEEEEEeCCCCCeeEEEEE
Q 014247 384 IEVEQDQLIEGSVVLSQSKENARFMNIHL 412 (428)
Q Consensus 384 i~v~~g~~i~~~~~~~~~~~~~r~~~~~~ 412 (428)
+.|++||+|+++++...+ ...=+|+..+
T Consensus 419 l~V~~g~~I~~~i~R~~~-~~~vWYEW~v 446 (448)
T PF05185_consen 419 LYVKAGDEISVHIWRKTD-DRKVWYEWSV 446 (448)
T ss_dssp EEE-TT-EEEEEEEEECC-STCEEEEEEE
T ss_pred EEECCCCEEEEEEEEEcC-CCcEEEEEEE
Confidence 999999999988887765 4455666554
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.3e-25 Score=216.80 Aligned_cols=276 Identities=23% Similarity=0.330 Sum_probs=218.9
Q ss_pred hhhhhhccChhhHHHHHHHHHhccCCC-------CCCEEEEEcCCCcHHHHHHHHc-----CCCeEEEEeChHHHHHHHH
Q 014247 85 GIHEEMIKDRVRTETYRAAIMQNQSFI-------EGKVVVDVGCGTGILSIFCAQA-----GAKRVYAVDASDIAVQANE 152 (428)
Q Consensus 85 ~~~~~~~~d~~r~~~~~~~i~~~~~~~-------~~~~VLDiGcGtG~ls~~la~~-----g~~~V~giD~s~~~~~a~~ 152 (428)
..|+.+.+|...+..|.++|.+++... .-.+|+-+|+|.|-+.....++ .--++++||.++.+....+
T Consensus 333 ~TYetFEkD~VKY~~Yq~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~ 412 (649)
T KOG0822|consen 333 QTYETFEKDPVKYDQYQQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQ 412 (649)
T ss_pred hhhhhhhccchHHHHHHHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhh
Confidence 357778899999999999998876432 1246889999999886555443 1228999999944334344
Q ss_pred HHHHCCCCCcEEEEEcccccccCC-CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccc
Q 014247 153 VVKANNLTDKVIVLHGRVEDVEID-EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDR 231 (428)
Q Consensus 153 ~~~~~~~~~~v~~~~~d~~~l~~~-~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~ 231 (428)
+..-..+.++|+++.+|++.+..+ ++.|++||+++|++..++. -+++|..+.++|||+|+.||...+.|+.|+..+.+
T Consensus 413 ~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSELLGSFGDNEL-SPECLDG~q~fLkpdgIsIP~sYtSyi~PImS~~l 491 (649)
T KOG0822|consen 413 NRNFECWDNRVTIISSDMRKWNAPREQADIIVSELLGSFGDNEL-SPECLDGAQKFLKPDGISIPSSYTSYIAPIMSPKL 491 (649)
T ss_pred hhchhhhcCeeEEEeccccccCCchhhccchHHHhhccccCccC-CHHHHHHHHhhcCCCceEccchhhhhhcccccHHH
Confidence 455567888999999999999887 9999999999999888887 57789999999999999999999999999999888
Q ss_pred hhhhhhhhhccCCCCcchhHHHHHhcCCCCceEEeecCCccccCCeeEEEEeCCCCCcccccceeeeeEEEEeeccceeE
Q 014247 232 YSESIDFWRNVYGIDMSAMMPLAKQCAFEEPSVETITGENVLTWPHVVKHVDCYTIQIHELESIATTFKFKSMMRAPLHG 311 (428)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~~~~~~ls~p~~~~~~d~~~~~~~~l~~~~~~~~~~~~~~g~~~g 311 (428)
|.+.... ...+.|+.+.+..+.....++.+..+++|..++....--......++|++..+|.+||
T Consensus 492 ~q~v~a~---------------~~~~~fe~~YVV~l~~~~~La~~q~vftF~HPN~~~nv~N~R~~s~eF~~~~~~~lHG 556 (649)
T KOG0822|consen 492 YQEVKAT---------------NDPNAFEAPYVVLLHNYCILAEPQPVFTFEHPNFDFNVDNSRSKSVEFKVKSNGVLHG 556 (649)
T ss_pred HHHHHhc---------------CCccccccceEEEecceeecCCCCceeEEecCCcccccccccceeEEEecCCCceEee
Confidence 7654321 1125788888888888889999999999999876433223346788999999999999
Q ss_pred EEEEEEeeccCCCCCCCCCCCCCcccCCCCCCCCccccccccCCCCCcEEEecCCCC--C-CCceeeeEEeeCCccccCC
Q 014247 312 FAFWFDVEFSTPAISPANNHIPPVVVGSSNNHPMDGCQKKKRANPNEALVLSTAPED--P-PTHWQQTMIYFYDPIEVEQ 388 (428)
Q Consensus 312 ~~~wf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSt~P~~--~-~thW~q~~~~l~~pi~v~~ 388 (428)
|++|||+.|++ +|.||+.|.. | -.+|++++|||++|+.|.+
T Consensus 557 FaGYFd~~LYk------------------------------------dI~LSI~P~T~TP~MfSWFPi~fPlk~Pi~v~e 600 (649)
T KOG0822|consen 557 FAGYFDAVLYK------------------------------------DIFLSIEPNTHTPGMFSWFPIFFPLKQPITVRE 600 (649)
T ss_pred cchhhhhhhhh------------------------------------eeeEeeccCCCCCCceeeeeeeeeccCceEeCC
Confidence 99999999984 7999999973 1 2579999999999999999
Q ss_pred CCEEEEEEEEEeCCCCCeeEEEEEE
Q 014247 389 DQLIEGSVVLSQSKENARFMNIHLE 413 (428)
Q Consensus 389 g~~i~~~~~~~~~~~~~r~~~~~~~ 413 (428)
|++|+..++...+ ...-+|+..++
T Consensus 601 ~~~lsv~~wR~~d-~~kVWYEW~v~ 624 (649)
T KOG0822|consen 601 GSTLSVHFWRCVD-STKVWYEWSVE 624 (649)
T ss_pred CCeEEEEEEEEeC-CceeEEEEEee
Confidence 9999977766652 23345554444
|
|
| >PTZ00357 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.7e-20 Score=187.51 Aligned_cols=296 Identities=18% Similarity=0.199 Sum_probs=203.6
Q ss_pred hhhhhhccChhhHHHHHHHHHhccCCC---------------------------------CCCEEEEEcCCCcHHHHHHH
Q 014247 85 GIHEEMIKDRVRTETYRAAIMQNQSFI---------------------------------EGKVVVDVGCGTGILSIFCA 131 (428)
Q Consensus 85 ~~~~~~~~d~~r~~~~~~~i~~~~~~~---------------------------------~~~~VLDiGcGtG~ls~~la 131 (428)
..|+.+.+|..+++.|.++|.+.+... ...+|+-+|+|.|.|...+.
T Consensus 640 ~TYEVFEKDpVKYdqYE~AI~kAL~Dw~~~~~~~~~~~~ns~~~~k~~~mdrvp~~~~d~~~vVImVVGAGRGPLVdraL 719 (1072)
T PTZ00357 640 GVYEVFERDARKYRQYREAVFHYVRDWYAAGAEQQHAHQNSEFFAKHGVMQRVPVPSPDERTLHLVLLGCGRGPLIDECL 719 (1072)
T ss_pred hhHHHHcCCcHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccCCCceEEEEEEcCCccHHHHHHH
Confidence 467888999999999999998876210 11368999999998865554
Q ss_pred Hc----CCC-eEEEEeCh-HHHHHHHHHH-HHCCC-------CCcEEEEEcccccccCC------------CceeEEEEe
Q 014247 132 QA----GAK-RVYAVDAS-DIAVQANEVV-KANNL-------TDKVIVLHGRVEDVEID------------EEVDVIISE 185 (428)
Q Consensus 132 ~~----g~~-~V~giD~s-~~~~~a~~~~-~~~~~-------~~~v~~~~~d~~~l~~~------------~~~DlVvs~ 185 (428)
++ |.+ +|++||.+ +.+...+.+. ....+ .++|+++..|++.+..+ +++|+||||
T Consensus 720 rAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~s~~~P~~~gKaDIVVSE 799 (1072)
T PTZ00357 720 HAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENGSLTLPADFGLCDLIVSE 799 (1072)
T ss_pred HHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccccccccccccccceehHh
Confidence 43 322 89999999 6554444332 33344 34699999999998543 379999999
Q ss_pred cchhhhcchhhHHHHHHHHhccccc----Ce-------EEEccCCeeeEeecCCccchhhhhhhhhccCCCCcch-hHHH
Q 014247 186 WMGYMLLYESMLGSVITARDRWLKR----GG-------LILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSA-MMPL 253 (428)
Q Consensus 186 ~~~~~l~~~~~~~~~l~~~~~~Lkp----gG-------~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~ 253 (428)
++|++..+|. -+++|..+.+.||+ +| +.||...+.|++|+..+.++.+....-. .++.... ....
T Consensus 800 LLGSFGDNEL-SPECLDGaQrfLKdiqhsdGIl~~ph~ISIPqSYTSYIAPISSpKLya~V~~~~~--~gltvP~p~c~~ 876 (1072)
T PTZ00357 800 LLGSLGDNEL-SPECLEAFHAQLEDIQLSRGIAFNPHLMCIPQQYTAWVAPLMSATFDAAVTEAAV--KGLTVPPPGCHD 876 (1072)
T ss_pred hhcccccccC-CHHHHHHHHHhhhhhccccccccCCcceecchhhhhhccccccHHHHHHHHHhhh--cccccCCccccc
Confidence 9999998887 56778888888875 55 5899999999999999988776432111 1111100 0000
Q ss_pred HHhcCCCCceEEeecCCccccCCeeEEEEeCCCCCccc----------------ccceeeeeEEEEeeccceeEEEEEEE
Q 014247 254 AKQCAFEEPSVETITGENVLTWPHVVKHVDCYTIQIHE----------------LESIATTFKFKSMMRAPLHGFAFWFD 317 (428)
Q Consensus 254 l~~~Gf~~~~~~~~~~~~~ls~p~~~~~~d~~~~~~~~----------------l~~~~~~~~~~~~~~g~~~g~~~wf~ 317 (428)
...+.|+.+.+..+.....++.|..+++|..++..... .......+.|.+..++.||||++||+
T Consensus 877 ~haa~fet~YVV~L~s~~~La~PQPcFTFeHPn~~~s~n~y~~~~g~~~~~~~i~N~Rya~L~F~v~~d~vlHGFAGYFd 956 (1072)
T PTZ00357 877 HHAALNHTLLVTNLSRAVTLAPPQPCWTFEHRFHGGSDNDYKGDRGAMKRREPVSLERAASLLFEVPPCGRCCGLAGYFS 956 (1072)
T ss_pred cchhhcccceEEEecceeecCCCcceeEEECCCcccccccccccccccccccccccceeEEEEEecCCCcceeeeeeEEE
Confidence 01123555666666666677889999999987654210 11235788999999999999999999
Q ss_pred eeccCCCCCCCCCCCCCcccCCCCCCCCccccccccCCCCCcEEEecCCCCC---CCceeeeEEeeC---CccccCCCC-
Q 014247 318 VEFSTPAISPANNHIPPVVVGSSNNHPMDGCQKKKRANPNEALVLSTAPEDP---PTHWQQTMIYFY---DPIEVEQDQ- 390 (428)
Q Consensus 318 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSt~P~~~---~thW~q~~~~l~---~pi~v~~g~- 390 (428)
+.|++.+. ...+.|||.|..- .-+|++++|||+ .+..+++||
T Consensus 957 AvLYkDVt-------------------------------~~~V~LSI~P~ThTpgMfSWFPIFFPLeP~~~~e~~~~gq~ 1005 (1072)
T PTZ00357 957 AVLYQSAT-------------------------------APATIIATAPVERTEDMYSWFPCVFALEPAQQAELQDVGQA 1005 (1072)
T ss_pred EEeecCCC-------------------------------ccceEeecCCCCCCCCccceeeeEEecCccccceEeecccc
Confidence 99996211 1248899999732 247999999999 677777776
Q ss_pred ------EEEEEEEEEeCC---CCCeeEEEEEEE
Q 014247 391 ------LIEGSVVLSQSK---ENARFMNIHLEY 414 (428)
Q Consensus 391 ------~i~~~~~~~~~~---~~~r~~~~~~~~ 414 (428)
.+...|++.+.. +..-+|+..+.+
T Consensus 1006 ~~~~~~~~~i~~~l~Rr~~~~e~rVwYew~v~~ 1038 (1072)
T PTZ00357 1006 AAEESRMVAIRVQLDRRTSLAEQRVWYEWSVTY 1038 (1072)
T ss_pred ccccccceeEEEeeeeccccccceEEEEEEEee
Confidence 234445555543 344566666654
|
|
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.5e-20 Score=179.43 Aligned_cols=269 Identities=22% Similarity=0.272 Sum_probs=196.9
Q ss_pred hhhHHHhhhccchhhhhhccChhhHHHHHHHHHhccCCCC-----C-CEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-H
Q 014247 73 FDVAYFHSYAHVGIHEEMIKDRVRTETYRAAIMQNQSFIE-----G-KVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-D 145 (428)
Q Consensus 73 ~~~~~f~~y~~~~~~~~~~~d~~r~~~~~~~i~~~~~~~~-----~-~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~ 145 (428)
+++++-+..++.. |.+|++|..|+.+|+..|...+...+ | ..|||||+|||+++++++++|+..|+|+|.- +
T Consensus 22 e~yd~~qelArSs-y~DMl~D~dRNiky~~gi~~tIte~kh~~~~gkv~vLdigtGTGLLSmMAvragaD~vtA~EvfkP 100 (636)
T KOG1501|consen 22 ENYDTDQELARSS-YLDMLNDSDRNIKYRLGIEKTITEPKHVLDIGKVFVLDIGTGTGLLSMMAVRAGADSVTACEVFKP 100 (636)
T ss_pred cccchHHHHHHhh-HHHHhhcccccHHHHHHHHHHhcccceeccCceEEEEEccCCccHHHHHHHHhcCCeEEeehhhch
Confidence 3445555555543 77899999999999999988764332 1 3699999999999999999999999999999 9
Q ss_pred HHHHHHHHHHHCCCCCcEEEEEcccccccCC--CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeE
Q 014247 146 IAVQANEVVKANNLTDKVIVLHGRVEDVEID--EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYM 223 (428)
Q Consensus 146 ~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~--~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~ 223 (428)
|.+.|++...+||++++|.+++...+++... .+.|+++.+.+..-+..+..++.+-.+..+++++|...+|.+++.|+
T Consensus 101 M~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~e~fdtEligeGalps~qhAh~~L~~~nc~~VP~ratvY~ 180 (636)
T KOG1501|consen 101 MVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVREDFDTELIGEGALPSLQHAHDMLLVDNCKTVPYRATVYC 180 (636)
T ss_pred HHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhHhhhhhhhhccccchhHHHHHHHhcccCCeeccccceEEE
Confidence 9999999999999999999999988887654 45899999888888888888999999999999999999999999999
Q ss_pred eecCCccchhhhhhhhhccCCCCcch------hHHHHHhc-CCC----CceEEeec-CCccccCCeeEEEEeCCCCCccc
Q 014247 224 APVTHPDRYSESIDFWRNVYGIDMSA------MMPLAKQC-AFE----EPSVETIT-GENVLTWPHVVKHVDCYTIQIHE 291 (428)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~------l~~~l~~~-Gf~----~~~~~~~~-~~~~ls~p~~~~~~d~~~~~~~~ 291 (428)
.++++..++. |.+........ ...-++.| |-. ....+... .-.+|+.+-.++.+||..-....
T Consensus 181 qlVES~~l~~-----~ndl~~~~~~ts~gv~~~p~~lesc~G~~sv~d~ql~~~~~~ef~~Ls~~~~~F~~df~~~~~s~ 255 (636)
T KOG1501|consen 181 QLVESTFLCN-----LNDLRNNEAKTSDGVRLVPPGLESCFGIKSVQDSQLVDAIEKEFKLLSSEGTIFYSDFPRWIDSN 255 (636)
T ss_pred EEehhhhhhh-----hhccccccccccCCcccCCCccccCCCchhHHHHHHhhcchhhheeecCcceeEEeecchhhhcc
Confidence 9998765542 22221111110 00001111 110 00011111 12578889999999997321110
Q ss_pred ccceeeeeEEEEeeccceeEEEEEEEeeccCCCCCCCCCCCCCcccCCCCCCCCccccccccCCCCCcEEEecCCCCC--
Q 014247 292 LESIATTFKFKSMMRAPLHGFAFWFDVEFSTPAISPANNHIPPVVVGSSNNHPMDGCQKKKRANPNEALVLSTAPEDP-- 369 (428)
Q Consensus 292 l~~~~~~~~~~~~~~g~~~g~~~wf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSt~P~~~-- 369 (428)
- ..+....+....+|++.....||+.+|+ +.+.+.+..+|.+.
T Consensus 256 s-~~~~~r~~va~~Sg~~~~~l~wwdi~mD----------------------------------~~g~~f~~m~p~w~~~ 300 (636)
T KOG1501|consen 256 S-EIEELRPPVAVHSGPLRSNLLWWDISMD----------------------------------QFGFSFLVMQPLWTGV 300 (636)
T ss_pred h-hhhhhcCcccccccchhheeeeeeeeec----------------------------------cCcceEEEecceecCC
Confidence 0 0111334556678999999999999995 35678889999742
Q ss_pred -------CCceeeeEEeeCC
Q 014247 370 -------PTHWQQTMIYFYD 382 (428)
Q Consensus 370 -------~thW~q~~~~l~~ 382 (428)
..||.|+++++++
T Consensus 301 ~~~~~~~~~~weq~c~y~~~ 320 (636)
T KOG1501|consen 301 TIGNSVFGLLWEQACPYPKE 320 (636)
T ss_pred ChHHHHHHHHHHHhcCCChh
Confidence 2699999999884
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.9e-18 Score=166.86 Aligned_cols=194 Identities=19% Similarity=0.168 Sum_probs=134.5
Q ss_pred CCCchhhHHHhhhccchhhhh------hccChhhHHHHHHHHHhccC-------CCCCCEEEEEcCCCcHHHHHHHHcCC
Q 014247 69 PCTDFDVAYFHSYAHVGIHEE------MIKDRVRTETYRAAIMQNQS-------FIEGKVVVDVGCGTGILSIFCAQAGA 135 (428)
Q Consensus 69 ~~~~~~~~~f~~y~~~~~~~~------~~~d~~r~~~~~~~i~~~~~-------~~~~~~VLDiGcGtG~ls~~la~~g~ 135 (428)
.....+...|+..+..+|... ...+..|...+.+.+.+.+. ..++.+|||||||+|.++..+++.|+
T Consensus 75 s~~~~e~~~f~~~a~~WW~~~g~~~~lh~~N~~R~~~i~~~l~~~~~~~~~~~~~~~g~~ILDIGCG~G~~s~~La~~g~ 154 (322)
T PLN02396 75 SLNEDELAKFSAIADTWWHSEGPFKPLHQMNPTRLAFIRSTLCRHFSKDPSSAKPFEGLKFIDIGCGGGLLSEPLARMGA 154 (322)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCchHHHHhChHHHHHHHHHHHHHhccchhhccCCCCCEEEEeeCCCCHHHHHHHHcCC
Confidence 445566667777776544321 11234455555555544432 24677999999999999999999876
Q ss_pred CeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC-CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeE
Q 014247 136 KRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID-EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGL 213 (428)
Q Consensus 136 ~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~-~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~ 213 (428)
+|+|||++ .+++.|++++...+...+++++++|+++++.. ++||+|++.. +++|..++..+++++.++|||||.
T Consensus 155 -~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~---vLeHv~d~~~~L~~l~r~LkPGG~ 230 (322)
T PLN02396 155 -TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLE---VIEHVANPAEFCKSLSALTIPNGA 230 (322)
T ss_pred -EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhh---HHHhcCCHHHHHHHHHHHcCCCcE
Confidence 89999999 99999998877666656799999999988754 7899999854 788888899999999999999999
Q ss_pred EEccCCeeeEeecCCccchhhhhhhhhc------cCCCCcchhHHHHHhcCCCCceEEe
Q 014247 214 ILPSYATLYMAPVTHPDRYSESIDFWRN------VYGIDMSAMMPLAKQCAFEEPSVET 266 (428)
Q Consensus 214 lv~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~l~~~Gf~~~~~~~ 266 (428)
+++...+.............+....|-. ...++.+++..+++++||+...+.-
T Consensus 231 liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~~~G 289 (322)
T PLN02396 231 TVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKEMAG 289 (322)
T ss_pred EEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEEEee
Confidence 9987654221000000000000011100 1235788999999999998766543
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2e-18 Score=158.30 Aligned_cols=117 Identities=25% Similarity=0.389 Sum_probs=104.7
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc
Q 014247 97 TETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE 174 (428)
Q Consensus 97 ~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~ 174 (428)
...|++.+...+...+|.+|||||||||.+++.+++. |..+|+|+|+| .|+..|+++....+..+ ++|+++|++++|
T Consensus 36 ~~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~LP 114 (238)
T COG2226 36 HRLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENLP 114 (238)
T ss_pred hHHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhhCC
Confidence 3467777777766668999999999999999999997 66799999999 99999999999888877 999999999999
Q ss_pred CC-CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 175 ID-EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 175 ~~-~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
++ .+||+|.+.. .+.+..+.+.+|++++|+|||||++++.
T Consensus 115 f~D~sFD~vt~~f---glrnv~d~~~aL~E~~RVlKpgG~~~vl 155 (238)
T COG2226 115 FPDNSFDAVTISF---GLRNVTDIDKALKEMYRVLKPGGRLLVL 155 (238)
T ss_pred CCCCccCEEEeee---hhhcCCCHHHHHHHHHHhhcCCeEEEEE
Confidence 97 9999999754 8999999999999999999999988753
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.6e-18 Score=160.40 Aligned_cols=115 Identities=24% Similarity=0.344 Sum_probs=84.7
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC
Q 014247 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-G-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI 175 (428)
Q Consensus 99 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~ 175 (428)
.|++.+.+.+...++.+|||+|||||.++..+++. + ..+|+|+|+| +|++.|++++...+.. +|+++++|++++++
T Consensus 34 ~wr~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~-~i~~v~~da~~lp~ 112 (233)
T PF01209_consen 34 RWRRKLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ-NIEFVQGDAEDLPF 112 (233)
T ss_dssp ---SHHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB--S
T ss_pred HHHHHHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC-CeeEEEcCHHHhcC
Confidence 45555666666688999999999999999999886 3 3499999999 9999999999988776 69999999999998
Q ss_pred C-CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 176 D-EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 176 ~-~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
+ ++||+|++.. .+.+..++..+++++.|+|||||++++-
T Consensus 113 ~d~sfD~v~~~f---glrn~~d~~~~l~E~~RVLkPGG~l~il 152 (233)
T PF01209_consen 113 PDNSFDAVTCSF---GLRNFPDRERALREMYRVLKPGGRLVIL 152 (233)
T ss_dssp -TT-EEEEEEES----GGG-SSHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCceeEEEHHh---hHHhhCCHHHHHHHHHHHcCCCeEEEEe
Confidence 6 8999999754 7777788999999999999999998754
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.9e-17 Score=159.25 Aligned_cols=165 Identities=19% Similarity=0.219 Sum_probs=117.8
Q ss_pred hhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccc
Q 014247 95 VRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDV 173 (428)
Q Consensus 95 ~r~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l 173 (428)
.+.......+...+...++++|||||||+|.++..++..|+..|+|+|+| .|+..++...+..+...++.+..++++++
T Consensus 104 ~~s~~~~~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~l 183 (314)
T TIGR00452 104 WRSDIKWDRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQL 183 (314)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHC
Confidence 33344455666666678899999999999999999998888889999999 88776543322222234688999999998
Q ss_pred cCCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEe---ecCCccchhhhhhhhhcc-CCCCcch
Q 014247 174 EIDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMA---PVTHPDRYSESIDFWRNV-YGIDMSA 249 (428)
Q Consensus 174 ~~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~ 249 (428)
+...+||+|+|.. ++.|..++..+++++++.|+|||.+++.+..+... .......+... .++ +..+...
T Consensus 184 p~~~~FD~V~s~g---vL~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~----~nv~flpS~~~ 256 (314)
T TIGR00452 184 HELYAFDTVFSMG---VLYHRKSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKM----KNVYFIPSVSA 256 (314)
T ss_pred CCCCCcCEEEEcc---hhhccCCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhc----cccccCCCHHH
Confidence 7767899999965 66677789999999999999999999865322110 00011112111 122 3446788
Q ss_pred hHHHHHhcCCCCceEEe
Q 014247 250 MMPLAKQCAFEEPSVET 266 (428)
Q Consensus 250 l~~~l~~~Gf~~~~~~~ 266 (428)
+..+++++||+.+.+..
T Consensus 257 L~~~L~~aGF~~V~i~~ 273 (314)
T TIGR00452 257 LKNWLEKVGFENFRILD 273 (314)
T ss_pred HHHHHHHCCCeEEEEEe
Confidence 99999999999876543
|
Known examples to date are restricted to the proteobacteria. |
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.5e-17 Score=158.99 Aligned_cols=167 Identities=20% Similarity=0.208 Sum_probs=117.8
Q ss_pred hHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc
Q 014247 96 RTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE 174 (428)
Q Consensus 96 r~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~ 174 (428)
+.....+.+...+...++++|||||||+|.++..+++.|++.|+|+|+| .++..++......+...++.++.+|+++++
T Consensus 106 ~s~~k~~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp 185 (322)
T PRK15068 106 RSDWKWDRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLP 185 (322)
T ss_pred hHHhHHHHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCC
Confidence 3333345556666667889999999999999999999988889999999 777654443333233446999999999998
Q ss_pred CCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhh-hhhhhhccC-CCCcchhHH
Q 014247 175 IDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSE-SIDFWRNVY-GIDMSAMMP 252 (428)
Q Consensus 175 ~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~l~~ 252 (428)
.+++||+|+|.. +++|..++..+++++++.|+|||.+++...... .......+.. ....+.+++ ..+...+..
T Consensus 186 ~~~~FD~V~s~~---vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~--~~~~~~l~p~~~y~~~~~~~~lps~~~l~~ 260 (322)
T PRK15068 186 ALKAFDTVFSMG---VLYHRRSPLDHLKQLKDQLVPGGELVLETLVID--GDENTVLVPGDRYAKMRNVYFIPSVPALKN 260 (322)
T ss_pred CcCCcCEEEECC---hhhccCCHHHHHHHHHHhcCCCcEEEEEEEEec--CCCccccCchhHHhcCccceeCCCHHHHHH
Confidence 778999999955 566777899999999999999999998642111 1000001110 000111222 236788999
Q ss_pred HHHhcCCCCceEEee
Q 014247 253 LAKQCAFEEPSVETI 267 (428)
Q Consensus 253 ~l~~~Gf~~~~~~~~ 267 (428)
+++++||+.+.+...
T Consensus 261 ~L~~aGF~~i~~~~~ 275 (322)
T PRK15068 261 WLERAGFKDVRIVDV 275 (322)
T ss_pred HHHHcCCceEEEEeC
Confidence 999999998766544
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.1e-18 Score=151.92 Aligned_cols=146 Identities=25% Similarity=0.244 Sum_probs=115.2
Q ss_pred CCCchhhHHHhhhccchhhhh------hccChhhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEe
Q 014247 69 PCTDFDVAYFHSYAHVGIHEE------MIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVD 142 (428)
Q Consensus 69 ~~~~~~~~~f~~y~~~~~~~~------~~~d~~r~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD 142 (428)
...+...+-|+..+..+|... ...++.|...+.+.+..... .+|++|||||||-|.++..+|+.|+ +|+|+|
T Consensus 11 ~id~~e~~~F~~la~~wwd~~g~f~~LH~~N~~rl~~i~~~~~~~~~-l~g~~vLDvGCGgG~Lse~mAr~Ga-~VtgiD 88 (243)
T COG2227 11 NVDYKELDKFEALASRWWDPEGEFKPLHKINPLRLDYIREVARLRFD-LPGLRVLDVGCGGGILSEPLARLGA-SVTGID 88 (243)
T ss_pred cCCHHHHHHHHHHHhhhcCCCCceeeeeeeccchhhhhhhhhhcccC-CCCCeEEEecCCccHhhHHHHHCCC-eeEEec
Confidence 344555566777666654221 12233444444444433332 6899999999999999999999997 999999
Q ss_pred Ch-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC-CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCe
Q 014247 143 AS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID-EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYAT 220 (428)
Q Consensus 143 ~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~-~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 220 (428)
++ .+++.|+..+.++++. +.+.+..++++... ++||+|+|.- +++|.+++..+++.+.+++||||.+++++.+
T Consensus 89 ~se~~I~~Ak~ha~e~gv~--i~y~~~~~edl~~~~~~FDvV~cmE---VlEHv~dp~~~~~~c~~lvkP~G~lf~STin 163 (243)
T COG2227 89 ASEKPIEVAKLHALESGVN--IDYRQATVEDLASAGGQFDVVTCME---VLEHVPDPESFLRACAKLVKPGGILFLSTIN 163 (243)
T ss_pred CChHHHHHHHHhhhhcccc--ccchhhhHHHHHhcCCCccEEEEhh---HHHccCCHHHHHHHHHHHcCCCcEEEEeccc
Confidence 99 9999999999998875 78899999988765 8999999955 8999999999999999999999999998876
Q ss_pred e
Q 014247 221 L 221 (428)
Q Consensus 221 ~ 221 (428)
.
T Consensus 164 r 164 (243)
T COG2227 164 R 164 (243)
T ss_pred c
Confidence 4
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.74 E-value=5e-17 Score=159.46 Aligned_cols=157 Identities=20% Similarity=0.123 Sum_probs=116.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC-CceeEEEEecch
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID-EEVDVIISEWMG 188 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~-~~~DlVvs~~~~ 188 (428)
.++.+|||||||+|.++..+++....+|+|+|+| .+++.|++++...++.++++++.+|+.+++++ ++||+|++..
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~-- 194 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSME-- 194 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECC--
Confidence 5778999999999999999998633399999999 99999999999888888899999999998775 8999999855
Q ss_pred hhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccc---hhhhhhhhhcc----CCCCcchhHHHHHhcCCCC
Q 014247 189 YMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDR---YSESIDFWRNV----YGIDMSAMMPLAKQCAFEE 261 (428)
Q Consensus 189 ~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~---~~~~~~~~~~~----~~~~~~~l~~~l~~~Gf~~ 261 (428)
.++|..+...+++++.++|||||.+++............... ........... ...+...+..+++++||..
T Consensus 195 -~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aGf~~ 273 (340)
T PLN02244 195 -SGEHMPDKRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLGLQD 273 (340)
T ss_pred -chhccCCHHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHCCCCe
Confidence 566667789999999999999999987542211100000000 00111111111 1235778999999999999
Q ss_pred ceEEeecCC
Q 014247 262 PSVETITGE 270 (428)
Q Consensus 262 ~~~~~~~~~ 270 (428)
+.++.+...
T Consensus 274 v~~~d~s~~ 282 (340)
T PLN02244 274 IKTEDWSEH 282 (340)
T ss_pred eEeeeCcHH
Confidence 887766644
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.73 E-value=4e-17 Score=134.02 Aligned_cols=107 Identities=32% Similarity=0.405 Sum_probs=89.8
Q ss_pred CCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccc-ccccCCCceeEEEEec-c
Q 014247 112 EGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRV-EDVEIDEEVDVIISEW-M 187 (428)
Q Consensus 112 ~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~-~~l~~~~~~DlVvs~~-~ 187 (428)
|+.+|||||||+|.++..+++. +..+|+|+|+| .+++.|++++...+..++++++++|+ ......++||+|++.. .
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~ 80 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFT 80 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCc
Confidence 5789999999999999999993 34489999999 99999999998888888999999999 5555558899999976 2
Q ss_pred hhhhcchhhHHHHHHHHhcccccCeEEEccC
Q 014247 188 GYMLLYESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 188 ~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
...+....+...+++.+.+.|+|||++++..
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 81 LHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 2223333668899999999999999999753
|
... |
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.2e-17 Score=152.94 Aligned_cols=174 Identities=22% Similarity=0.197 Sum_probs=130.4
Q ss_pred HHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC
Q 014247 98 ETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID 176 (428)
Q Consensus 98 ~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~ 176 (428)
.+..+.+.+.+.+.+|++|||||||.|.+++.+|+....+|+|+++| ++.+.+++++...|++.+++++..|..++.
T Consensus 58 ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~-- 135 (283)
T COG2230 58 RAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE-- 135 (283)
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc--
Confidence 34566778888899999999999999999999999833499999999 999999999999999989999999999877
Q ss_pred CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhhccCCCCcchhHHHHHh
Q 014247 177 EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAMMPLAKQ 256 (428)
Q Consensus 177 ~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 256 (428)
++||.|||-.|...+.. ...+.+++.++++|+|||++++.+.+..-.+......| ....+|...+-..++.+.....+
T Consensus 136 e~fDrIvSvgmfEhvg~-~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~~~~~~-i~~yiFPgG~lPs~~~i~~~~~~ 213 (283)
T COG2230 136 EPFDRIVSVGMFEHVGK-ENYDDFFKKVYALLKPGGRMLLHSITGPDQEFRRFPDF-IDKYIFPGGELPSISEILELASE 213 (283)
T ss_pred cccceeeehhhHHHhCc-ccHHHHHHHHHhhcCCCceEEEEEecCCCcccccchHH-HHHhCCCCCcCCCHHHHHHHHHh
Confidence 56999999663333322 23899999999999999999976543322111000111 11123333333456777777889
Q ss_pred cCCCCceEEeecCCccccC
Q 014247 257 CAFEEPSVETITGENVLTW 275 (428)
Q Consensus 257 ~Gf~~~~~~~~~~~~~ls~ 275 (428)
+||.+..++.+.+++..+.
T Consensus 214 ~~~~v~~~~~~~~hYa~Tl 232 (283)
T COG2230 214 AGFVVLDVESLRPHYARTL 232 (283)
T ss_pred cCcEEehHhhhcHHHHHHH
Confidence 9999888888777665543
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.6e-17 Score=151.21 Aligned_cols=169 Identities=20% Similarity=0.250 Sum_probs=121.6
Q ss_pred ccChhhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcc
Q 014247 91 IKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGR 169 (428)
Q Consensus 91 ~~d~~r~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d 169 (428)
+..+.|.....+.+...+....|++|||||||+|..+..++++|++.|+|+|.+ ......+-..+-.+....+.++..-
T Consensus 94 IDtEWrSd~KW~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplg 173 (315)
T PF08003_consen 94 IDTEWRSDWKWDRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLG 173 (315)
T ss_pred ecccccccchHHHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcc
Confidence 444566666677788888788999999999999999999999999999999999 5443322222222233345555556
Q ss_pred cccccCCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeE---eecCCccchhhhhhhhhccCCCC
Q 014247 170 VEDVEIDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYM---APVTHPDRYSESIDFWRNVYGID 246 (428)
Q Consensus 170 ~~~l~~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 246 (428)
+++++..+.||+|+|.. ++.|..++-..|..++..|+|||.+|+.+..+-. ..+....+|....+.| +-.+
T Consensus 174 vE~Lp~~~~FDtVF~MG---VLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~---FiPs 247 (315)
T PF08003_consen 174 VEDLPNLGAFDTVFSMG---VLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVW---FIPS 247 (315)
T ss_pred hhhccccCCcCEEEEee---ehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceE---EeCC
Confidence 77877678999999954 6777888999999999999999999976543221 1122234454433322 3346
Q ss_pred cchhHHHHHhcCCCCceEE
Q 014247 247 MSAMMPLAKQCAFEEPSVE 265 (428)
Q Consensus 247 ~~~l~~~l~~~Gf~~~~~~ 265 (428)
...+..|++++||..+.+.
T Consensus 248 ~~~L~~wl~r~gF~~v~~v 266 (315)
T PF08003_consen 248 VAALKNWLERAGFKDVRCV 266 (315)
T ss_pred HHHHHHHHHHcCCceEEEe
Confidence 8899999999999986544
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.5e-17 Score=154.87 Aligned_cols=168 Identities=23% Similarity=0.280 Sum_probs=113.1
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC
Q 014247 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID 176 (428)
Q Consensus 99 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~ 176 (428)
...+.+.+.+...+|.+|||||||.|.++..+|+. |+ +|+||.+| ++.+.+++++++.|+.+++++...|..+++
T Consensus 49 ~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~-~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~-- 125 (273)
T PF02353_consen 49 RKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGC-HVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP-- 125 (273)
T ss_dssp HHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG----
T ss_pred HHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCc-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC--
Confidence 34556677778899999999999999999999998 77 89999999 999999999999999999999999999876
Q ss_pred CceeEEEEecchhhhcch--hhHHHHHHHHhcccccCeEEEccCCeeeEeecCCcc----chhhhhhhhhccCCCCcchh
Q 014247 177 EEVDVIISEWMGYMLLYE--SMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPD----RYSESIDFWRNVYGIDMSAM 250 (428)
Q Consensus 177 ~~~DlVvs~~~~~~l~~~--~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l 250 (428)
.+||.|+|-. ++.|. ...+.+++.+.++|+|||++++...+....+..... .|. ....|+...-..++.+
T Consensus 126 ~~fD~IvSi~---~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i-~kyiFPgg~lps~~~~ 201 (273)
T PF02353_consen 126 GKFDRIVSIE---MFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFI-RKYIFPGGYLPSLSEI 201 (273)
T ss_dssp -S-SEEEEES---EGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHH-HHHTSTTS---BHHHH
T ss_pred CCCCEEEEEe---chhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCceEE-EEeeCCCCCCCCHHHH
Confidence 5999999965 34443 568999999999999999999765433211110000 111 1122333333346677
Q ss_pred HHHHHhcCCCCceEEeecCCccc
Q 014247 251 MPLAKQCAFEEPSVETITGENVL 273 (428)
Q Consensus 251 ~~~l~~~Gf~~~~~~~~~~~~~l 273 (428)
...+++.||++..++.+..++..
T Consensus 202 ~~~~~~~~l~v~~~~~~~~hY~~ 224 (273)
T PF02353_consen 202 LRAAEDAGLEVEDVENLGRHYAR 224 (273)
T ss_dssp HHHHHHTT-EEEEEEE-HHHHHH
T ss_pred HHHHhcCCEEEEEEEEcCcCHHH
Confidence 77778899998888777655433
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.2e-16 Score=148.18 Aligned_cols=165 Identities=16% Similarity=0.134 Sum_probs=115.3
Q ss_pred HHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHH--CCCCCcEEEEEccccc
Q 014247 98 ETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-G-AKRVYAVDAS-DIAVQANEVVKA--NNLTDKVIVLHGRVED 172 (428)
Q Consensus 98 ~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~giD~s-~~~~~a~~~~~~--~~~~~~v~~~~~d~~~ 172 (428)
..+++.+.+.+...++.+|||+|||+|.++..+++. + ..+|+|+|+| +|++.|+++... .....+++++++|+++
T Consensus 59 ~~~r~~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~ 138 (261)
T PLN02233 59 RIWKRMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATD 138 (261)
T ss_pred HHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEccccc
Confidence 345555555556678899999999999999998876 3 2489999999 999999876542 2233469999999999
Q ss_pred ccCC-CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccch---h--------------h
Q 014247 173 VEID-EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRY---S--------------E 234 (428)
Q Consensus 173 l~~~-~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~---~--------------~ 234 (428)
++++ ++||+|++.. .+++..++..+++++.++|||||++++........+.. ...+ . +
T Consensus 139 lp~~~~sfD~V~~~~---~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 214 (261)
T PLN02233 139 LPFDDCYFDAITMGY---GLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKSTQPFT-TSMQEWMIDNVVVPVATGYGLAK 214 (261)
T ss_pred CCCCCCCEeEEEEec---ccccCCCHHHHHHHHHHHcCcCcEEEEEECCCCCcHHH-HHHHHHHHhhhhhHHHHHhCChH
Confidence 9886 7899999865 66777789999999999999999988654321100000 0000 0 0
Q ss_pred h-hhhhhc-cCCCCcchhHHHHHhcCCCCceEEe
Q 014247 235 S-IDFWRN-VYGIDMSAMMPLAKQCAFEEPSVET 266 (428)
Q Consensus 235 ~-~~~~~~-~~~~~~~~l~~~l~~~Gf~~~~~~~ 266 (428)
. ...+.. ...++..++.++++++||+.+....
T Consensus 215 ~y~~l~~s~~~f~s~~el~~ll~~aGF~~~~~~~ 248 (261)
T PLN02233 215 EYEYLKSSINEYLTGEELEKLALEAGFSSAKHYE 248 (261)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHCCCCEEEEEE
Confidence 0 000001 1234678889999999999876544
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.1e-15 Score=142.13 Aligned_cols=168 Identities=22% Similarity=0.270 Sum_probs=120.1
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccc
Q 014247 97 TETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-G-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDV 173 (428)
Q Consensus 97 ~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l 173 (428)
...+++.+.+.+...++.+|||+|||+|.++..+++. + ..+|+|+|++ .+++.|++++...++ ++++++++|+.++
T Consensus 30 ~~~~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~ 108 (231)
T TIGR02752 30 HKKWRKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL-HNVELVHGNAMEL 108 (231)
T ss_pred hHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEEechhcC
Confidence 4455666777777778899999999999999999876 3 3489999999 999999999887777 4699999999887
Q ss_pred cCC-CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeE---------------eecCCcc---chhh
Q 014247 174 EID-EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYM---------------APVTHPD---RYSE 234 (428)
Q Consensus 174 ~~~-~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~---------------~~~~~~~---~~~~ 234 (428)
+++ ++||+|++.. .+.+..+...+++++.++|+|||.+++....... .|..... .+.+
T Consensus 109 ~~~~~~fD~V~~~~---~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 185 (231)
T TIGR02752 109 PFDDNSFDYVTIGF---GLRNVPDYMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYFFYFKYIMPLFGKLFAKSYKE 185 (231)
T ss_pred CCCCCCccEEEEec---ccccCCCHHHHHHHHHHHcCcCeEEEEEECCCCCChHHHHHHHHHHcChhHHhhHHhcCCHHH
Confidence 765 7899999864 5666677889999999999999998864321100 0000000 0000
Q ss_pred hhhhhhc-cCCCCcchhHHHHHhcCCCCceEEeec
Q 014247 235 SIDFWRN-VYGIDMSAMMPLAKQCAFEEPSVETIT 268 (428)
Q Consensus 235 ~~~~~~~-~~~~~~~~l~~~l~~~Gf~~~~~~~~~ 268 (428)
....+.. ...++..++..+++++||+.+.+..+.
T Consensus 186 ~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~ 220 (231)
T TIGR02752 186 YSWLQESTRDFPGMDELAEMFQEAGFKDVEVKSYT 220 (231)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHcCCCeeEEEEcc
Confidence 0000000 123467889999999999988766543
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=9.6e-17 Score=145.44 Aligned_cols=183 Identities=20% Similarity=0.201 Sum_probs=124.1
Q ss_pred hHHHhhhccchhhhh------hccChhhHHHHHHHHHhccC-CCC------CCEEEEEcCCCcHHHHHHHHcCCCeEEEE
Q 014247 75 VAYFHSYAHVGIHEE------MIKDRVRTETYRAAIMQNQS-FIE------GKVVVDVGCGTGILSIFCAQAGAKRVYAV 141 (428)
Q Consensus 75 ~~~f~~y~~~~~~~~------~~~d~~r~~~~~~~i~~~~~-~~~------~~~VLDiGcGtG~ls~~la~~g~~~V~gi 141 (428)
..-|+..+..+|+++ ...+..|....++-+..... ..| |++|||+|||+|+++..||+.|+ .|+||
T Consensus 39 V~~f~~la~~wwd~~g~~~~Lh~mn~~Rl~fi~d~~~~~v~~~~p~~k~~~g~~ilDvGCGgGLLSepLArlga-~V~GI 117 (282)
T KOG1270|consen 39 VKKFQALAFTWWDEEGVRHPLHSMNQTRLPFIRDDLRNRVNNHAPGSKPLLGMKILDVGCGGGLLSEPLARLGA-QVTGI 117 (282)
T ss_pred HHHHHHhcccccccccchhhhhhccchhhhHHHHHHHhcccccCCCccccCCceEEEeccCccccchhhHhhCC-eeEee
Confidence 344555554443332 23345666666666666652 233 48899999999999999999987 99999
Q ss_pred eCh-HHHHHHHHHHHHCCCCC-----cEEEEEcccccccCCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEE
Q 014247 142 DAS-DIAVQANEVVKANNLTD-----KVIVLHGRVEDVEIDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLIL 215 (428)
Q Consensus 142 D~s-~~~~~a~~~~~~~~~~~-----~v~~~~~d~~~l~~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv 215 (428)
|++ .|++.|++....+...+ ++++.+.+++++. ++||+|+|.- +++|..++.+++..+.++|||||.++
T Consensus 118 D~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~--~~fDaVvcse---vleHV~dp~~~l~~l~~~lkP~G~lf 192 (282)
T KOG1270|consen 118 DASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT--GKFDAVVCSE---VLEHVKDPQEFLNCLSALLKPNGRLF 192 (282)
T ss_pred cccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc--cccceeeeHH---HHHHHhCHHHHHHHHHHHhCCCCceE
Confidence 999 99999999855443333 4778888888765 6699999965 88899999999999999999999999
Q ss_pred ccCCeeeEeecCCccchhhhhhhhhcc------CCCCcchhHHHHHhcCCCCce
Q 014247 216 PSYATLYMAPVTHPDRYSESIDFWRNV------YGIDMSAMMPLAKQCAFEEPS 263 (428)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~l~~~Gf~~~~ 263 (428)
+++.+--.......-.+.+..-.|-.. -.++..++..++..+++....
T Consensus 193 ittinrt~lS~~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~~~~v~~ 246 (282)
T KOG1270|consen 193 ITTINRTILSFAGTIFLAEIVLRIVPKGTHTWEKFINPEELTSILNANGAQVND 246 (282)
T ss_pred eeehhhhHHHhhccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhcCcchhh
Confidence 887653322222222222221111111 124556667777777665443
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=2e-16 Score=149.37 Aligned_cols=152 Identities=18% Similarity=0.239 Sum_probs=112.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc--CCCceeEEEEecc
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE--IDEEVDVIISEWM 187 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~--~~~~~DlVvs~~~ 187 (428)
.++.+|||+|||+|.++..+++.|. +|+|+|+| .|++.|++++...++.++++++++|+.++. .+++||+|++..
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~- 120 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHA- 120 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehh-
Confidence 4567999999999999999999876 89999999 999999999998888778999999998874 247899999865
Q ss_pred hhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCC--ccchhhh---h-----hhhhccCCCCcchhHHHHHhc
Q 014247 188 GYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTH--PDRYSES---I-----DFWRNVYGIDMSAMMPLAKQC 257 (428)
Q Consensus 188 ~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~--~~~~~~~---~-----~~~~~~~~~~~~~l~~~l~~~ 257 (428)
++++..++..+++++.++|||||.+++...+........ ...+... . ......++++.+.+..+++++
T Consensus 121 --vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~l~~a 198 (255)
T PRK11036 121 --VLEWVADPKSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQVYQWLEEA 198 (255)
T ss_pred --HHHhhCCHHHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCCCCHHHHHHHHHHC
Confidence 666667788999999999999999976432211000000 0000000 0 000113457788999999999
Q ss_pred CCCCceEEe
Q 014247 258 AFEEPSVET 266 (428)
Q Consensus 258 Gf~~~~~~~ 266 (428)
||+...+.-
T Consensus 199 Gf~~~~~~g 207 (255)
T PRK11036 199 GWQIMGKTG 207 (255)
T ss_pred CCeEeeeee
Confidence 998765443
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.7e-15 Score=140.39 Aligned_cols=157 Identities=18% Similarity=0.230 Sum_probs=113.4
Q ss_pred HHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC-Cce
Q 014247 102 AAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID-EEV 179 (428)
Q Consensus 102 ~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~-~~~ 179 (428)
..+...+...++.+|||||||+|..+..+++....+|+|+|++ .++..|+++... .+++.++.+|+.+.+++ ++|
T Consensus 42 ~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~---~~~i~~~~~D~~~~~~~~~~F 118 (263)
T PTZ00098 42 TKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD---KNKIEFEANDILKKDFPENTF 118 (263)
T ss_pred HHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc---CCceEEEECCcccCCCCCCCe
Confidence 3444556678899999999999999998887523389999999 999999887543 34699999999887765 789
Q ss_pred eEEEEecchhhhcch--hhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhh-hhhhhhc--cCCCCcchhHHHH
Q 014247 180 DVIISEWMGYMLLYE--SMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSE-SIDFWRN--VYGIDMSAMMPLA 254 (428)
Q Consensus 180 DlVvs~~~~~~l~~~--~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~l~~~l 254 (428)
|+|++.. .+.|. .+...+++++.++|||||.+++...... ....+.. ...++.. ....+...+..++
T Consensus 119 D~V~s~~---~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 190 (263)
T PTZ00098 119 DMIYSRD---AILHLSYADKKKLFEKCYKWLKPNGILLITDYCAD-----KIENWDEEFKAYIKKRKYTLIPIQEYGDLI 190 (263)
T ss_pred EEEEEhh---hHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccc-----cccCcHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence 9999853 33333 3689999999999999999997643211 0111111 1112211 1234678899999
Q ss_pred HhcCCCCceEEeecC
Q 014247 255 KQCAFEEPSVETITG 269 (428)
Q Consensus 255 ~~~Gf~~~~~~~~~~ 269 (428)
+++||+.+..+....
T Consensus 191 ~~aGF~~v~~~d~~~ 205 (263)
T PTZ00098 191 KSCNFQNVVAKDISD 205 (263)
T ss_pred HHCCCCeeeEEeCcH
Confidence 999999888776543
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.9e-15 Score=132.94 Aligned_cols=115 Identities=19% Similarity=0.266 Sum_probs=101.7
Q ss_pred HHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CC------CeEEEEeCh-HHHHHHHHHHHHCCCCCc--EEEEE
Q 014247 98 ETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-GA------KRVYAVDAS-DIAVQANEVVKANNLTDK--VIVLH 167 (428)
Q Consensus 98 ~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~------~~V~giD~s-~~~~~a~~~~~~~~~~~~--v~~~~ 167 (428)
+.|.+.....+...++.++||++||||.+++.+.+. +. ++|+.+|+| +|+..++++..+.++... +.+++
T Consensus 86 RlWKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~ 165 (296)
T KOG1540|consen 86 RLWKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVE 165 (296)
T ss_pred HHHHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEe
Confidence 356777778888888999999999999999999886 33 699999999 999999999888787655 99999
Q ss_pred cccccccCC-CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEE
Q 014247 168 GRVEDVEID-EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLIL 215 (428)
Q Consensus 168 ~d~~~l~~~-~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv 215 (428)
+|+++++++ .+||..++. +.+.+..+++..+++++|+|||||++.
T Consensus 166 ~dAE~LpFdd~s~D~yTia---fGIRN~th~~k~l~EAYRVLKpGGrf~ 211 (296)
T KOG1540|consen 166 GDAEDLPFDDDSFDAYTIA---FGIRNVTHIQKALREAYRVLKPGGRFS 211 (296)
T ss_pred CCcccCCCCCCcceeEEEe---cceecCCCHHHHHHHHHHhcCCCcEEE
Confidence 999999997 899999964 488888899999999999999999887
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.1e-15 Score=129.19 Aligned_cols=106 Identities=30% Similarity=0.440 Sum_probs=91.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHH-c-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc--CCCceeEEEEe
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQ-A-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE--IDEEVDVIISE 185 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~-~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~--~~~~~DlVvs~ 185 (428)
.++.+|||+|||+|.++..+++ . ...+++|+|+| .+++.|+++++..++. +++|+++|+.+++ ++++||+|++.
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~l~~~~~~~~D~I~~~ 80 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIEDLPQELEEKFDIIISN 80 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTCGCGCSSTTEEEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhccccccCCCeeEEEEc
Confidence 4578999999999999999994 3 34589999999 9999999999999987 6999999999977 44799999997
Q ss_pred cchhhhcchhhHHHHHHHHhcccccCeEEEccCCe
Q 014247 186 WMGYMLLYESMLGSVITARDRWLKRGGLILPSYAT 220 (428)
Q Consensus 186 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 220 (428)
. .+.+..++..+++.+.++|++||++++....
T Consensus 81 ~---~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 81 G---VLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp S---TGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred C---chhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 6 5677788899999999999999999876543
|
... |
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.6e-15 Score=141.84 Aligned_cols=147 Identities=20% Similarity=0.245 Sum_probs=104.6
Q ss_pred HHHhccCCCCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCcee
Q 014247 103 AIMQNQSFIEGKVVVDVGCGTGILSIFCAQAG-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVD 180 (428)
Q Consensus 103 ~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~D 180 (428)
.+...+...++.+|||||||+|.++..+++.. ..+|+|+|+| .|++.|++. +++++++|++++...++||
T Consensus 20 ~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~fD 91 (255)
T PRK14103 20 DLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER--------GVDARTGDVRDWKPKPDTD 91 (255)
T ss_pred HHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc--------CCcEEEcChhhCCCCCCce
Confidence 34455566788999999999999999999872 3489999999 999888652 3789999998876558999
Q ss_pred EEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhh--hhhhc----------cCCCCcc
Q 014247 181 VIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESI--DFWRN----------VYGIDMS 248 (428)
Q Consensus 181 lVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~--~~~~~----------~~~~~~~ 248 (428)
+|++.. .+++..++..+++++.++|||||.+++........+.. ....... ..|.. ....+..
T Consensus 92 ~v~~~~---~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~--~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 166 (255)
T PRK14103 92 VVVSNA---ALQWVPEHADLLVRWVDELAPGSWIAVQVPGNFDAPSH--AAVRALARREPWAKLLRDIPFRVGAVVQTPA 166 (255)
T ss_pred EEEEeh---hhhhCCCHHHHHHHHHHhCCCCcEEEEEcCCCcCChhH--HHHHHHhccCchhHHhcccccccCcCCCCHH
Confidence 999976 66677788999999999999999998754321100100 0000000 11211 1123567
Q ss_pred hhHHHHHhcCCCCc
Q 014247 249 AMMPLAKQCAFEEP 262 (428)
Q Consensus 249 ~l~~~l~~~Gf~~~ 262 (428)
.+..+++++||+..
T Consensus 167 ~~~~~l~~aGf~v~ 180 (255)
T PRK14103 167 GYAELLTDAGCKVD 180 (255)
T ss_pred HHHHHHHhCCCeEE
Confidence 88999999999743
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.7e-15 Score=134.41 Aligned_cols=109 Identities=24% Similarity=0.334 Sum_probs=90.3
Q ss_pred HhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEE
Q 014247 105 MQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVII 183 (428)
Q Consensus 105 ~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVv 183 (428)
.+.+...++.+|||+|||+|.++..+++.|. +|+|+|+| .+++.+++++...++.+ +++...|+.+++++++||+|+
T Consensus 23 ~~~l~~~~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~fD~I~ 100 (197)
T PRK11207 23 LEAVKVVKPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIANLERIKAAENLDN-LHTAVVDLNNLTFDGEYDFIL 100 (197)
T ss_pred HHhcccCCCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCCc-ceEEecChhhCCcCCCcCEEE
Confidence 3344456778999999999999999999876 89999999 99999999988888754 899999998877778899999
Q ss_pred EecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 184 SEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 184 s~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
+..+.+.+ ...++..+++++.++|+|||.+++
T Consensus 101 ~~~~~~~~-~~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 101 STVVLMFL-EAKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred EecchhhC-CHHHHHHHHHHHHHHcCCCcEEEE
Confidence 97633222 334688999999999999998654
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.2e-15 Score=137.60 Aligned_cols=146 Identities=16% Similarity=0.111 Sum_probs=113.1
Q ss_pred CEEEEEcCCCcHHHHHHHHcC-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEEecchhhh
Q 014247 114 KVVVDVGCGTGILSIFCAQAG-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWMGYML 191 (428)
Q Consensus 114 ~~VLDiGcGtG~ls~~la~~g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~~~~~~l 191 (428)
++|||||||+|.++..+++.. ..+|+|+|+| .++..|++++...++.++++++.+|+...+.+++||+|++.. ++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~---~l 77 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFE---VI 77 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHH---HH
Confidence 479999999999999998863 3489999999 999999999999899889999999997766668999999855 56
Q ss_pred cchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhhccCCCCcchhHHHHHhcCCCCceEEeecCC
Q 014247 192 LYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAMMPLAKQCAFEEPSVETITGE 270 (428)
Q Consensus 192 ~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~~~~ 270 (428)
++..+...+++++.++|+|||.+++...... . +......+...+..+...+.+++.++||.......+..+
T Consensus 78 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~---~-----~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~~~~~~ 148 (224)
T smart00828 78 HHIKDKMDLFSNISRHLKDGGHLVLADFIAN---L-----LSAIEHEETTSYLVTREEWAELLARNNLRVVEGVDASLE 148 (224)
T ss_pred HhCCCHHHHHHHHHHHcCCCCEEEEEEcccc---c-----CccccccccccccCCHHHHHHHHHHCCCeEEEeEECcHh
Confidence 6667789999999999999999997643210 0 000000011223456778899999999998887776554
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.3e-15 Score=138.42 Aligned_cols=106 Identities=20% Similarity=0.328 Sum_probs=87.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc---CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEEec
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQA---GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEW 186 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~---g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~~ 186 (428)
.++.+|||||||+|.++..+++. ...+|+|+|+| .|++.|++++...+...+++++++|+.+++.+ .+|+|++..
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~-~~D~vv~~~ 133 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE-NASMVVLNF 133 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC-CCCEEehhh
Confidence 46789999999999999888872 33499999999 99999999998888877899999999988764 599999865
Q ss_pred chhhhcchhhHHHHHHHHhcccccCeEEEccC
Q 014247 187 MGYMLLYESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 187 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
..+.+. ......+++++++.|||||.+++..
T Consensus 134 ~l~~l~-~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 134 TLQFLE-PSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred HHHhCC-HHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 333332 3346789999999999999998865
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.4e-15 Score=117.52 Aligned_cols=93 Identities=29% Similarity=0.412 Sum_probs=77.9
Q ss_pred EEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC-CceeEEEEecchhhhcch
Q 014247 117 VDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID-EEVDVIISEWMGYMLLYE 194 (428)
Q Consensus 117 LDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~-~~~DlVvs~~~~~~l~~~ 194 (428)
||+|||+|..+..+++.+..+|+++|++ ++++.++++.... ++.++.+|+++++++ ++||+|++.. .+++.
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~----~~~~~~~d~~~l~~~~~sfD~v~~~~---~~~~~ 73 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNE----GVSFRQGDAEDLPFPDNSFDVVFSNS---VLHHL 73 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTS----TEEEEESBTTSSSS-TT-EEEEEEES---HGGGS
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccccc----CchheeehHHhCcccccccccccccc---ceeec
Confidence 8999999999999999956699999999 9999988876543 467999999999886 9999999976 55555
Q ss_pred hhHHHHHHHHhcccccCeEEEc
Q 014247 195 SMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 195 ~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
.++..+++++.|+|||||++++
T Consensus 74 ~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 74 EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp SHHHHHHHHHHHHEEEEEEEEE
T ss_pred cCHHHHHHHHHHHcCcCeEEeC
Confidence 7899999999999999999874
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.7e-14 Score=139.87 Aligned_cols=156 Identities=22% Similarity=0.225 Sum_probs=110.9
Q ss_pred HHHHHHHHHhccCC-CCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccc
Q 014247 97 TETYRAAIMQNQSF-IEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDV 173 (428)
Q Consensus 97 ~~~~~~~i~~~~~~-~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l 173 (428)
.+..++.+.+.... .++.+|||||||+|.++..+++. +..+|+++|.| .|++.|+++... .+++++.+|++++
T Consensus 97 ~e~~r~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~----~~i~~i~gD~e~l 172 (340)
T PLN02490 97 TEDMRDDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIIEGDAEDL 172 (340)
T ss_pred hHHHHHHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc----cCCeEEeccHHhC
Confidence 34444444443332 46789999999999999888875 44589999999 999998887542 3588999999998
Q ss_pred cCC-CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhh--hhhhhhccCCCCcchh
Q 014247 174 EID-EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSE--SIDFWRNVYGIDMSAM 250 (428)
Q Consensus 174 ~~~-~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l 250 (428)
+++ ++||+|++.. .+++..+...+++++.++|+|||++++... ... ..+.. ....|. .....+++
T Consensus 173 p~~~~sFDvVIs~~---~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~------~~p-~~~~~r~~~~~~~--~~~t~eEl 240 (340)
T PLN02490 173 PFPTDYADRYVSAG---SIEYWPDPQRGIKEAYRVLKIGGKACLIGP------VHP-TFWLSRFFADVWM--LFPKEEEY 240 (340)
T ss_pred CCCCCceeEEEEcC---hhhhCCCHHHHHHHHHHhcCCCcEEEEEEe------cCc-chhHHHHhhhhhc--cCCCHHHH
Confidence 765 7899999865 556666788999999999999999876321 111 11111 011121 12357889
Q ss_pred HHHHHhcCCCCceEEeec
Q 014247 251 MPLAKQCAFEEPSVETIT 268 (428)
Q Consensus 251 ~~~l~~~Gf~~~~~~~~~ 268 (428)
.++++++||+.+.++.+.
T Consensus 241 ~~lL~~aGF~~V~i~~i~ 258 (340)
T PLN02490 241 IEWFTKAGFKDVKLKRIG 258 (340)
T ss_pred HHHHHHCCCeEEEEEEcC
Confidence 999999999988766543
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.1e-15 Score=134.56 Aligned_cols=110 Identities=21% Similarity=0.271 Sum_probs=87.9
Q ss_pred HHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeE
Q 014247 103 AIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDV 181 (428)
Q Consensus 103 ~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~Dl 181 (428)
.+.+.+...++.+|||+|||+|.++..+++.|. +|+|+|+| .+++.+++++..+++. +.+...|+...+++++||+
T Consensus 21 ~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~~d~~~~~~~~~fD~ 97 (195)
T TIGR00477 21 AVREAVKTVAPCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIASVLDMKARENLP--LRTDAYDINAAALNEDYDF 97 (195)
T ss_pred HHHHHhccCCCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHhCCC--ceeEeccchhccccCCCCE
Confidence 334444445678999999999999999999876 89999999 9999999988887774 7788888876666678999
Q ss_pred EEEecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 182 IISEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 182 Vvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
|++..+.+.+ ...+...+++++.++|+|||++++
T Consensus 98 I~~~~~~~~~-~~~~~~~~l~~~~~~LkpgG~lli 131 (195)
T TIGR00477 98 IFSTVVFMFL-QAGRVPEIIANMQAHTRPGGYNLI 131 (195)
T ss_pred EEEecccccC-CHHHHHHHHHHHHHHhCCCcEEEE
Confidence 9997632222 234678999999999999998654
|
Part of a tellurite-reducing operon tehA and tehB |
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.2e-14 Score=136.79 Aligned_cols=151 Identities=21% Similarity=0.348 Sum_probs=112.4
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHc-CC-CeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC-CceeEEEE
Q 014247 109 SFIEGKVVVDVGCGTGILSIFCAQA-GA-KRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID-EEVDVIIS 184 (428)
Q Consensus 109 ~~~~~~~VLDiGcGtG~ls~~la~~-g~-~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~-~~~DlVvs 184 (428)
...++.+|||||||+|..+..+++. +. .+|+|+|++ .+++.|+++....++. +++++.+|+++++++ +.||+|++
T Consensus 74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~-~v~~~~~d~~~l~~~~~~fD~Vi~ 152 (272)
T PRK11873 74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYT-NVEFRLGEIEALPVADNSVDVIIS 152 (272)
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCC-CEEEEEcchhhCCCCCCceeEEEE
Confidence 3468899999999999988877775 44 379999999 9999999998888775 699999999988765 68999998
Q ss_pred ecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhhcc--CCCCcchhHHHHHhcCCCCc
Q 014247 185 EWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNV--YGIDMSAMMPLAKQCAFEEP 262 (428)
Q Consensus 185 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~l~~~Gf~~~ 262 (428)
+. .+++..+...+++++.++|||||++++...... . ..+.........|... ..++..++..+++++||..+
T Consensus 153 ~~---v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v 226 (272)
T PRK11873 153 NC---VINLSPDKERVFKEAFRVLKPGGRFAISDVVLR--G-ELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVDI 226 (272)
T ss_pred cC---cccCCCCHHHHHHHHHHHcCCCcEEEEEEeecc--C-CCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCce
Confidence 76 455566788999999999999999997643211 0 1111111222233221 22467789999999999987
Q ss_pred eEEe
Q 014247 263 SVET 266 (428)
Q Consensus 263 ~~~~ 266 (428)
.+..
T Consensus 227 ~i~~ 230 (272)
T PRK11873 227 TIQP 230 (272)
T ss_pred EEEe
Confidence 6543
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.5e-14 Score=128.69 Aligned_cols=109 Identities=23% Similarity=0.341 Sum_probs=87.5
Q ss_pred HHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEE
Q 014247 104 IMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVI 182 (428)
Q Consensus 104 i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlV 182 (428)
+.+.+...++.++||+|||.|+.+++||+.|. .|+++|.| ..++.+++.++..++. |+....|+.+..+++.||+|
T Consensus 22 v~~a~~~~~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~~~~~yD~I 98 (192)
T PF03848_consen 22 VLEAVPLLKPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFDFPEEYDFI 98 (192)
T ss_dssp HHHHCTTS-SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS-TTTEEEE
T ss_pred HHHHHhhcCCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhccccCCcCEE
Confidence 33445556778999999999999999999999 89999999 8888899988888885 99999999988888899999
Q ss_pred EEecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 183 ISEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 183 vs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
++..+..++ .....+.+++.+...++|||.+++
T Consensus 99 ~st~v~~fL-~~~~~~~i~~~m~~~~~pGG~~li 131 (192)
T PF03848_consen 99 VSTVVFMFL-QRELRPQIIENMKAATKPGGYNLI 131 (192)
T ss_dssp EEESSGGGS--GGGHHHHHHHHHHTEEEEEEEEE
T ss_pred EEEEEeccC-CHHHHHHHHHHHHhhcCCcEEEEE
Confidence 987544444 455689999999999999998876
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.5e-15 Score=132.65 Aligned_cols=145 Identities=24% Similarity=0.264 Sum_probs=100.4
Q ss_pred HHHHHHHhccC-CCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccc-cC
Q 014247 99 TYRAAIMQNQS-FIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDV-EI 175 (428)
Q Consensus 99 ~~~~~i~~~~~-~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l-~~ 175 (428)
.+.+.+.+... ..++.+|||||||+|.++..+++.|. +|+|+|++ .++.. ..+.....+.... ..
T Consensus 8 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~-----------~~~~~~~~~~~~~~~~ 75 (161)
T PF13489_consen 8 AYADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK-----------RNVVFDNFDAQDPPFP 75 (161)
T ss_dssp CHHHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH-----------TTSEEEEEECHTHHCH
T ss_pred HHHHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh-----------hhhhhhhhhhhhhhcc
Confidence 44455554443 47789999999999999999999888 99999999 77765 1133333333332 23
Q ss_pred CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhh----hccCCCCcchhH
Q 014247 176 DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFW----RNVYGIDMSAMM 251 (428)
Q Consensus 176 ~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~ 251 (428)
+++||+|+|.. ++++..++..+++.+.++|||||.+++....... .....+.. ..++ .....++.+.+.
T Consensus 76 ~~~fD~i~~~~---~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 148 (161)
T PF13489_consen 76 DGSFDLIICND---VLEHLPDPEEFLKELSRLLKPGGYLVISDPNRDD---PSPRSFLK-WRYDRPYGGHVHFFSPDELR 148 (161)
T ss_dssp SSSEEEEEEES---SGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBTTS---HHHHHHHH-CCGTCHHTTTTEEBBHHHHH
T ss_pred ccchhhHhhHH---HHhhcccHHHHHHHHHHhcCCCCEEEEEEcCCcc---hhhhHHHh-cCCcCccCceeccCCHHHHH
Confidence 48999999976 7777888999999999999999999986543211 00000000 0111 123446788999
Q ss_pred HHHHhcCCCCc
Q 014247 252 PLAKQCAFEEP 262 (428)
Q Consensus 252 ~~l~~~Gf~~~ 262 (428)
.+++++||+.+
T Consensus 149 ~ll~~~G~~iv 159 (161)
T PF13489_consen 149 QLLEQAGFEIV 159 (161)
T ss_dssp HHHHHTTEEEE
T ss_pred HHHHHCCCEEE
Confidence 99999999764
|
... |
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.5e-14 Score=130.04 Aligned_cols=165 Identities=20% Similarity=0.239 Sum_probs=118.3
Q ss_pred HHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcC--CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc
Q 014247 98 ETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAG--AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE 174 (428)
Q Consensus 98 ~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g--~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~ 174 (428)
..+++.+.+.+...++.+|||+|||+|.++..+++.. ..+|+|+|++ .++..++++.. ....++.++.+|+.+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~--~~~~~~~~~~~d~~~~~ 82 (241)
T PRK08317 5 RRYRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAA--GLGPNVEFVRGDADGLP 82 (241)
T ss_pred HHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhh--CCCCceEEEecccccCC
Confidence 3556666777777888999999999999999998862 3589999999 88988887732 23346999999998876
Q ss_pred CC-CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCC--ccchhhhhhhhhcc--CCCCcch
Q 014247 175 ID-EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTH--PDRYSESIDFWRNV--YGIDMSA 249 (428)
Q Consensus 175 ~~-~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~ 249 (428)
.+ ++||+|++.. .+.+..++..+++++.++|+|||.+++.........+.. .....+....|... .......
T Consensus 83 ~~~~~~D~v~~~~---~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (241)
T PRK08317 83 FPDGSFDAVRSDR---VLQHLEDPARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWSDHFADPWLGRR 159 (241)
T ss_pred CCCCCceEEEEec---hhhccCCHHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHHhcCCCCcHHHH
Confidence 54 7899999866 666777889999999999999999987654321111111 11222333333321 1122456
Q ss_pred hHHHHHhcCCCCceEEee
Q 014247 250 MMPLAKQCAFEEPSVETI 267 (428)
Q Consensus 250 l~~~l~~~Gf~~~~~~~~ 267 (428)
+..+++++||..+.++..
T Consensus 160 ~~~~l~~aGf~~~~~~~~ 177 (241)
T PRK08317 160 LPGLFREAGLTDIEVEPY 177 (241)
T ss_pred HHHHHHHcCCCceeEEEE
Confidence 888999999998776544
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.3e-14 Score=127.12 Aligned_cols=99 Identities=32% Similarity=0.394 Sum_probs=85.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEEecch
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWMG 188 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~~~~ 188 (428)
.++.+|||+|||+|.++..+++. +..+|+++|++ .+++.|+++++.+++.+ ++++++|+.++...++||+|++..+
T Consensus 44 ~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~-i~~~~~d~~~~~~~~~fDlV~~~~~- 121 (187)
T PRK00107 44 PGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKN-VTVVHGRAEEFGQEEKFDVVTSRAV- 121 (187)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCC-EEEEeccHhhCCCCCCccEEEEccc-
Confidence 34889999999999999998874 44599999999 99999999999999876 9999999998766679999998641
Q ss_pred hhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 189 YMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 189 ~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
..++.+++.+.++|+|||.+++.
T Consensus 122 ------~~~~~~l~~~~~~LkpGG~lv~~ 144 (187)
T PRK00107 122 ------ASLSDLVELCLPLLKPGGRFLAL 144 (187)
T ss_pred ------cCHHHHHHHHHHhcCCCeEEEEE
Confidence 34788999999999999999853
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.1e-14 Score=145.59 Aligned_cols=155 Identities=23% Similarity=0.249 Sum_probs=113.6
Q ss_pred HHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC-CceeE
Q 014247 104 IMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID-EEVDV 181 (428)
Q Consensus 104 i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~-~~~Dl 181 (428)
+.+.+...++.+|||||||+|.++..+++....+|+|+|+| .++..|+++.. +...+++|+.+|+.+.+++ ++||+
T Consensus 258 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~--~~~~~v~~~~~d~~~~~~~~~~fD~ 335 (475)
T PLN02336 258 FVDKLDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAI--GRKCSVEFEVADCTKKTYPDNSFDV 335 (475)
T ss_pred HHHhcCCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhh--cCCCceEEEEcCcccCCCCCCCEEE
Confidence 34444456788999999999999998988633389999999 99999988764 3445799999999887765 68999
Q ss_pred EEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhhc--cCCCCcchhHHHHHhcCC
Q 014247 182 IISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRN--VYGIDMSAMMPLAKQCAF 259 (428)
Q Consensus 182 Vvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~Gf 259 (428)
|+|.. .+.|..++..++++++++|||||.+++...... +......+. .++.. ....+...+.++++++||
T Consensus 336 I~s~~---~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~--~~~~~~~~~---~~~~~~g~~~~~~~~~~~~l~~aGF 407 (475)
T PLN02336 336 IYSRD---TILHIQDKPALFRSFFKWLKPGGKVLISDYCRS--PGTPSPEFA---EYIKQRGYDLHDVQAYGQMLKDAGF 407 (475)
T ss_pred EEECC---cccccCCHHHHHHHHHHHcCCCeEEEEEEeccC--CCCCcHHHH---HHHHhcCCCCCCHHHHHHHHHHCCC
Confidence 99965 566777899999999999999999997653211 111111111 11111 122356788999999999
Q ss_pred CCceEEeec
Q 014247 260 EEPSVETIT 268 (428)
Q Consensus 260 ~~~~~~~~~ 268 (428)
+.+.++.+.
T Consensus 408 ~~i~~~d~~ 416 (475)
T PLN02336 408 DDVIAEDRT 416 (475)
T ss_pred eeeeeecch
Confidence 988776554
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.9e-14 Score=133.33 Aligned_cols=107 Identities=18% Similarity=0.241 Sum_probs=87.2
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc---CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEEec
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQA---GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEW 186 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~---g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~~ 186 (428)
.++.+|||||||+|.++..+++. ...+|+|+|+| .|++.|++++...+...+++++++|+.+++++ .+|+|++..
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~d~v~~~~ 130 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK-NASMVILNF 130 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC-CCCEEeeec
Confidence 46789999999999999988875 23489999999 99999999988776666799999999988765 589998865
Q ss_pred chhhhcchhhHHHHHHHHhcccccCeEEEccCC
Q 014247 187 MGYMLLYESMLGSVITARDRWLKRGGLILPSYA 219 (428)
Q Consensus 187 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 219 (428)
..+.+ ...+...+++++.+.|+|||.+++...
T Consensus 131 ~l~~~-~~~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 131 TLQFL-PPEDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred chhhC-CHHHHHHHHHHHHHhcCCCeEEEEeec
Confidence 32222 223578899999999999999998753
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.4e-14 Score=126.05 Aligned_cols=99 Identities=30% Similarity=0.440 Sum_probs=83.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEEecch
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAG-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWMG 188 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~~~~ 188 (428)
.++.+|||+|||+|.++..++..+ ..+|+|+|.+ .+++.++++++.+++.+ ++++++|+.++...++||+|+++.
T Consensus 41 ~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~-i~~i~~d~~~~~~~~~fD~I~s~~-- 117 (181)
T TIGR00138 41 LDGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNN-VEIVNGRAEDFQHEEQFDVITSRA-- 117 (181)
T ss_pred cCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCC-eEEEecchhhccccCCccEEEehh--
Confidence 458899999999999999988764 4589999999 99999999998888864 999999999876568999999854
Q ss_pred hhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 189 YMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 189 ~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
+ .+++.+++.+.++|+|||.+++.
T Consensus 118 --~---~~~~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 118 --L---ASLNVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred --h---hCHHHHHHHHHHhcCCCCEEEEE
Confidence 2 23667788889999999999853
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.1e-14 Score=130.55 Aligned_cols=158 Identities=20% Similarity=0.210 Sum_probs=110.8
Q ss_pred HHHHHHhccC--CCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC
Q 014247 100 YRAAIMQNQS--FIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID 176 (428)
Q Consensus 100 ~~~~i~~~~~--~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~ 176 (428)
+.+.+.+.+. ..++.+|||+|||+|.++..+++.+. +|+|+|++ .++..|++++...+..+++.+.++|+.+++
T Consensus 41 ~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-- 117 (219)
T TIGR02021 41 MRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC-- 117 (219)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC--
Confidence 3344444443 45789999999999999999998865 89999999 999999999888777667999999998876
Q ss_pred CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhh------ccCCCCcchh
Q 014247 177 EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWR------NVYGIDMSAM 250 (428)
Q Consensus 177 ~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l 250 (428)
++||+|++..+...+ ....+..+++++.+++++++.+.+.....+.. .......+|. ..+.++..++
T Consensus 118 ~~fD~ii~~~~l~~~-~~~~~~~~l~~i~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (219)
T TIGR02021 118 GEFDIVVCMDVLIHY-PASDMAKALGHLASLTKERVIFTFAPKTAWLA------FLKMIGELFPGSSRATSAYLHPMTDL 190 (219)
T ss_pred CCcCEEEEhhHHHhC-CHHHHHHHHHHHHHHhCCCEEEEECCCchHHH------HHHHHHhhCcCcccccceEEecHHHH
Confidence 789999985421111 23457788999999998877766543221110 0000111121 1233467889
Q ss_pred HHHHHhcCCCCceEEee
Q 014247 251 MPLAKQCAFEEPSVETI 267 (428)
Q Consensus 251 ~~~l~~~Gf~~~~~~~~ 267 (428)
.++++++||+......+
T Consensus 191 ~~~l~~~Gf~v~~~~~~ 207 (219)
T TIGR02021 191 ERALGELGWKIVREGLV 207 (219)
T ss_pred HHHHHHcCceeeeeecc
Confidence 99999999998765533
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.1e-13 Score=127.23 Aligned_cols=115 Identities=23% Similarity=0.323 Sum_probs=94.6
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcC--CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC
Q 014247 100 YRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAG--AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID 176 (428)
Q Consensus 100 ~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g--~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~ 176 (428)
+...+...+...++.+|||+|||+|.++..+++.+ ..+|+++|++ .+++.+++++..+++..++.++.+|+.+++.+
T Consensus 39 ~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 118 (239)
T PRK00216 39 WRRKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFP 118 (239)
T ss_pred HHHHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCC
Confidence 34444444445577899999999999999999886 3699999999 99999999887766666799999999887654
Q ss_pred -CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 177 -EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 177 -~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
++||+|++.. .+++..++..+++.+.++|+|||.+++.
T Consensus 119 ~~~~D~I~~~~---~l~~~~~~~~~l~~~~~~L~~gG~li~~ 157 (239)
T PRK00216 119 DNSFDAVTIAF---GLRNVPDIDKALREMYRVLKPGGRLVIL 157 (239)
T ss_pred CCCccEEEEec---ccccCCCHHHHHHHHHHhccCCcEEEEE
Confidence 7899999754 5666777899999999999999988764
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.4e-14 Score=133.77 Aligned_cols=111 Identities=31% Similarity=0.446 Sum_probs=86.9
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC
Q 014247 97 TETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI 175 (428)
Q Consensus 97 ~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~ 175 (428)
++...+++.+.. .++++|||+|||||.|++.+++.|+++|+|+|++ ..++.|++++..|++.+++.+. ...+. .
T Consensus 148 T~lcl~~l~~~~--~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~~~-~ 222 (295)
T PF06325_consen 148 TRLCLELLEKYV--KPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSEDL-V 222 (295)
T ss_dssp HHHHHHHHHHHS--STTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTSCT-C
T ss_pred HHHHHHHHHHhc--cCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--Eeccc-c
Confidence 455666777664 6789999999999999999999999999999999 8899999999999999877663 22222 1
Q ss_pred CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccC
Q 014247 176 DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 176 ~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
.++||+|++|.+... +..++..+.++|+|||.++++.
T Consensus 223 ~~~~dlvvANI~~~v------L~~l~~~~~~~l~~~G~lIlSG 259 (295)
T PF06325_consen 223 EGKFDLVVANILADV------LLELAPDIASLLKPGGYLILSG 259 (295)
T ss_dssp CS-EEEEEEES-HHH------HHHHHHHCHHHEEEEEEEEEEE
T ss_pred cccCCEEEECCCHHH------HHHHHHHHHHhhCCCCEEEEcc
Confidence 389999999874433 4567778889999999999753
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.3e-14 Score=123.18 Aligned_cols=141 Identities=21% Similarity=0.269 Sum_probs=101.9
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCc
Q 014247 100 YRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEE 178 (428)
Q Consensus 100 ~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~ 178 (428)
|...+...+....-.++||+|||.|.++..||.+ +.+++++|+| ..++.|+++... . .+|+++++|+.+..++++
T Consensus 31 ~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al~~Ar~Rl~~--~-~~V~~~~~dvp~~~P~~~ 106 (201)
T PF05401_consen 31 YRATLLAALPRRRYRRALEVGCSIGVLTERLAPR-CDRLLAVDISPRALARARERLAG--L-PHVEWIQADVPEFWPEGR 106 (201)
T ss_dssp HHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHHHHHHHHTTT----SSEEEEES-TTT---SS-
T ss_pred HHHHHHHhcCccccceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHHHHHHHhcCC--C-CCeEEEECcCCCCCCCCC
Confidence 3333433455566679999999999999999998 6799999999 899999988754 3 359999999998877799
Q ss_pred eeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhhccCCCCcchhHHHHHhcC
Q 014247 179 VDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAMMPLAKQCA 258 (428)
Q Consensus 179 ~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G 258 (428)
||+||..-++|++....++..++..+...|+|||.+|+.+.. .+....|.+.+ ..+.+..++.+.-
T Consensus 107 FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~r------------d~~c~~wgh~~--ga~tv~~~~~~~~ 172 (201)
T PF05401_consen 107 FDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHAR------------DANCRRWGHAA--GAETVLEMLQEHL 172 (201)
T ss_dssp EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-------------HHHHHHTT-S----HHHHHHHHHHHS
T ss_pred eeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEec------------CCcccccCccc--chHHHHHHHHHHh
Confidence 999999888888877777999999999999999999975421 33455687654 4667777777653
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.53 E-value=6e-14 Score=132.10 Aligned_cols=114 Identities=32% Similarity=0.383 Sum_probs=90.0
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC
Q 014247 97 TETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI 175 (428)
Q Consensus 97 ~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~ 175 (428)
+....+++.+.. .++++|||+|||+|.|+..+++.|+++|+|+|++ -.++.|+++++.|+....+.....+....+.
T Consensus 149 T~lcL~~Le~~~--~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~ 226 (300)
T COG2264 149 TSLCLEALEKLL--KKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPE 226 (300)
T ss_pred HHHHHHHHHHhh--cCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcc
Confidence 445566666665 5899999999999999999999999999999999 7888899999999887533333334444333
Q ss_pred CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccC
Q 014247 176 DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 176 ~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
.++||+||+|.+.. -+..+...+.++|||||.++++.
T Consensus 227 ~~~~DvIVANILA~------vl~~La~~~~~~lkpgg~lIlSG 263 (300)
T COG2264 227 NGPFDVIVANILAE------VLVELAPDIKRLLKPGGRLILSG 263 (300)
T ss_pred cCcccEEEehhhHH------HHHHHHHHHHHHcCCCceEEEEe
Confidence 47999999986332 25577888999999999999764
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.9e-13 Score=126.00 Aligned_cols=162 Identities=19% Similarity=0.236 Sum_probs=112.7
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCC--CeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC
Q 014247 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGA--KRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI 175 (428)
Q Consensus 99 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~--~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~ 175 (428)
.+...+...+...++.+|||+|||+|.++..+++.+. .+++++|++ .++..++++.. ...++.++.+|+.+++.
T Consensus 26 ~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~~ 102 (223)
T TIGR01934 26 LWRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALPF 102 (223)
T ss_pred HHHHHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCCC
Confidence 4445555555556789999999999999999998855 489999999 88888887764 33468999999988765
Q ss_pred C-CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccc---hhh-----hhhhhh------
Q 014247 176 D-EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDR---YSE-----SIDFWR------ 240 (428)
Q Consensus 176 ~-~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~---~~~-----~~~~~~------ 240 (428)
+ ++||+|++.. .+.+..++..+++.+.++|+|||++++.......... .... +.. ....+.
T Consensus 103 ~~~~~D~i~~~~---~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (223)
T TIGR01934 103 EDNSFDAVTIAF---GLRNVTDIQKALREMYRVLKPGGRLVILEFSKPANAL-LKKFYKFYLKNVLPSIGGLISKNAEAY 178 (223)
T ss_pred CCCcEEEEEEee---eeCCcccHHHHHHHHHHHcCCCcEEEEEEecCCCchh-hHHHHHHHHHHhhhhhhhhhcCCchhh
Confidence 4 6899999865 5666777899999999999999999864321110000 0000 000 000000
Q ss_pred ----c--cCCCCcchhHHHHHhcCCCCceEEee
Q 014247 241 ----N--VYGIDMSAMMPLAKQCAFEEPSVETI 267 (428)
Q Consensus 241 ----~--~~~~~~~~l~~~l~~~Gf~~~~~~~~ 267 (428)
. ...++..++..++.++||+.+.++.+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 211 (223)
T TIGR01934 179 TYLPESIRAFPSQEELAAMLKEAGFEEVRYRSL 211 (223)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCccceeeee
Confidence 0 11245677899999999998776654
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=8.9e-14 Score=131.58 Aligned_cols=109 Identities=17% Similarity=0.270 Sum_probs=90.0
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCc
Q 014247 101 RAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEE 178 (428)
Q Consensus 101 ~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~ 178 (428)
.+.+...+...++.+|||||||+|.++..+++. +..+|+|+|+| .|++.|+++. .++.++.+|+.++..+.+
T Consensus 20 ~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~------~~~~~~~~d~~~~~~~~~ 93 (258)
T PRK01683 20 ARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL------PDCQFVEADIASWQPPQA 93 (258)
T ss_pred HHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC------CCCeEEECchhccCCCCC
Confidence 444555556677899999999999999999886 34599999999 9999888763 248899999988766679
Q ss_pred eeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccC
Q 014247 179 VDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 179 ~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
||+|++.. .+++..+...+++++.++|+|||.+++..
T Consensus 94 fD~v~~~~---~l~~~~d~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 94 LDLIFANA---SLQWLPDHLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred ccEEEEcc---ChhhCCCHHHHHHHHHHhcCCCcEEEEEC
Confidence 99999976 56666778899999999999999998764
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.2e-13 Score=122.26 Aligned_cols=104 Identities=30% Similarity=0.402 Sum_probs=85.5
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCC-eEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEEecchh
Q 014247 112 EGKVVVDVGCGTGILSIFCAQAGAK-RVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWMGY 189 (428)
Q Consensus 112 ~~~~VLDiGcGtG~ls~~la~~g~~-~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~~~~~ 189 (428)
++.+|||+|||+|.++..+++.+.. +|+++|++ .+++.+++++..+++.+ ++++..|..+-..+++||+|+|++..+
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~~~~~~fD~Iv~NPP~~ 109 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFEALPDGKFDLIVSNPPFH 109 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTTTCCTTCEEEEEE---SB
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccc-cccccccccccccccceeEEEEccchh
Confidence 6789999999999999999998665 79999999 99999999999999987 999999987654468999999997422
Q ss_pred hhc--chhhHHHHHHHHhcccccCeEEEc
Q 014247 190 MLL--YESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 190 ~l~--~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
... .......+++...++|+|||.+++
T Consensus 110 ~~~~~~~~~~~~~i~~a~~~Lk~~G~l~l 138 (170)
T PF05175_consen 110 AGGDDGLDLLRDFIEQARRYLKPGGRLFL 138 (170)
T ss_dssp TTSHCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred cccccchhhHHHHHHHHHHhccCCCEEEE
Confidence 221 112478889999999999999864
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.2e-13 Score=132.60 Aligned_cols=102 Identities=25% Similarity=0.352 Sum_probs=86.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEEecchh
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWMGY 189 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~~~~~ 189 (428)
.++.+|||+|||+|.++..+++.|. +|+|+|+| .+++.+++++..+++ ++++...|+.....+++||+|++..+.+
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~~~~~fD~I~~~~vl~ 195 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSASIQEEYDFILSTVVLM 195 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhcccccCCccEEEEcchhh
Confidence 4556999999999999999999876 89999999 999999999988887 4888889988766678999999976333
Q ss_pred hhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 190 MLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 190 ~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
.+ ...+...+++++.++|+|||.+++
T Consensus 196 ~l-~~~~~~~~l~~~~~~LkpgG~~l~ 221 (287)
T PRK12335 196 FL-NRERIPAIIKNMQEHTNPGGYNLI 221 (287)
T ss_pred hC-CHHHHHHHHHHHHHhcCCCcEEEE
Confidence 33 334688999999999999998664
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.1e-13 Score=130.37 Aligned_cols=110 Identities=22% Similarity=0.310 Sum_probs=89.5
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC-
Q 014247 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID- 176 (428)
Q Consensus 99 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~- 176 (428)
...+.+.+.+...++.+|||+|||+|.++..+++.+. +|+++|+| .|++.|+++.. .+.++++|+++++++
T Consensus 29 ~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~~~~~~~~ 101 (251)
T PRK10258 29 QSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRERGS-QVTALDLSPPMLAQARQKDA------ADHYLAGDIESLPLAT 101 (251)
T ss_pred HHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCC------CCCEEEcCcccCcCCC
Confidence 3444555555545678999999999999999988765 89999999 99998877632 246889999988765
Q ss_pred CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccC
Q 014247 177 EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 177 ~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
++||+|+++. .+.+..++..++.++.++|+|||.+++..
T Consensus 102 ~~fD~V~s~~---~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 102 ATFDLAWSNL---AVQWCGNLSTALRELYRVVRPGGVVAFTT 140 (251)
T ss_pred CcEEEEEECc---hhhhcCCHHHHHHHHHHHcCCCeEEEEEe
Confidence 6899999976 56677789999999999999999998754
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.50 E-value=7.4e-13 Score=119.08 Aligned_cols=135 Identities=20% Similarity=0.234 Sum_probs=101.1
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCc
Q 014247 101 RAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAG-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEE 178 (428)
Q Consensus 101 ~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~ 178 (428)
+..+...+...++.+|||+|||+|.++..+++.+ ..+|+++|++ .+++.|++++..+++. +++++.+|+.. ..+++
T Consensus 20 r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~-~i~~~~~d~~~-~~~~~ 97 (187)
T PRK08287 20 RALALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCG-NIDIIPGEAPI-ELPGK 97 (187)
T ss_pred HHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC-CeEEEecCchh-hcCcC
Confidence 3344455555688999999999999999999874 3589999999 9999999999888775 59999998753 34578
Q ss_pred eeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhhccCCCCcchhHHHHHhcC
Q 014247 179 VDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAMMPLAKQCA 258 (428)
Q Consensus 179 ~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G 258 (428)
||+|++.. .. ..+..+++.+.++|+|||.+++.... .-+...+..++++.|
T Consensus 98 ~D~v~~~~---~~---~~~~~~l~~~~~~Lk~gG~lv~~~~~-----------------------~~~~~~~~~~l~~~g 148 (187)
T PRK08287 98 ADAIFIGG---SG---GNLTAIIDWSLAHLHPGGRLVLTFIL-----------------------LENLHSALAHLEKCG 148 (187)
T ss_pred CCEEEECC---Cc---cCHHHHHHHHHHhcCCCeEEEEEEec-----------------------HhhHHHHHHHHHHCC
Confidence 99999854 11 23567888999999999999863210 012345667788899
Q ss_pred CCCceEEe
Q 014247 259 FEEPSVET 266 (428)
Q Consensus 259 f~~~~~~~ 266 (428)
|..+.+..
T Consensus 149 ~~~~~~~~ 156 (187)
T PRK08287 149 VSELDCVQ 156 (187)
T ss_pred CCcceEEE
Confidence 98766543
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.6e-13 Score=124.17 Aligned_cols=159 Identities=25% Similarity=0.208 Sum_probs=111.6
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc--CCC
Q 014247 101 RAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE--IDE 177 (428)
Q Consensus 101 ~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~--~~~ 177 (428)
.+.+...+...++.+|||||||+|.++..+++.+. +|+++|++ .++..|++++...+. .+.++..++.+++ ..+
T Consensus 37 ~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 113 (233)
T PRK05134 37 LNYIREHAGGLFGKRVLDVGCGGGILSESMARLGA-DVTGIDASEENIEVARLHALESGL--KIDYRQTTAEELAAEHPG 113 (233)
T ss_pred HHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcCC-eEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHHhhhhcCC
Confidence 34555555556789999999999999999998866 79999999 999999888776655 4788888888764 347
Q ss_pred ceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccch-hhhhhhhh------ccCCCCcchh
Q 014247 178 EVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRY-SESIDFWR------NVYGIDMSAM 250 (428)
Q Consensus 178 ~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~-~~~~~~~~------~~~~~~~~~l 250 (428)
+||+|++.. .+.+..++..+++.+.++|+|||.+++........ ......+ .+....+. ....++..++
T Consensus 114 ~fD~Ii~~~---~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (233)
T PRK05134 114 QFDVVTCME---MLEHVPDPASFVRACAKLVKPGGLVFFSTLNRNLK-SYLLAIVGAEYVLRMLPKGTHDYKKFIKPSEL 189 (233)
T ss_pred CccEEEEhh---HhhccCCHHHHHHHHHHHcCCCcEEEEEecCCChH-HHHHHHhhHHHHhhhcCcccCchhhcCCHHHH
Confidence 999999854 56677778899999999999999998764321000 0000000 00000000 0123466789
Q ss_pred HHHHHhcCCCCceEEe
Q 014247 251 MPLAKQCAFEEPSVET 266 (428)
Q Consensus 251 ~~~l~~~Gf~~~~~~~ 266 (428)
..+++++||+.+....
T Consensus 190 ~~~l~~~Gf~~v~~~~ 205 (233)
T PRK05134 190 AAWLRQAGLEVQDITG 205 (233)
T ss_pred HHHHHHCCCeEeeeee
Confidence 9999999999876543
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=9.7e-13 Score=119.42 Aligned_cols=111 Identities=24% Similarity=0.446 Sum_probs=89.6
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc--C
Q 014247 101 RAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-G-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE--I 175 (428)
Q Consensus 101 ~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~--~ 175 (428)
+..+...+...++.+|||+|||+|.++..+++. + ..+|+++|++ .+++.|+++++.+++.+++.++.+|+.+.. .
T Consensus 29 r~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~ 108 (198)
T PRK00377 29 RALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTI 108 (198)
T ss_pred HHHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhc
Confidence 333345566788999999999999999998875 3 3589999999 999999999999887677999999987642 2
Q ss_pred CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 176 DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 176 ~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
.++||+|++.. ....+..+++.+.++|+|||++++.
T Consensus 109 ~~~~D~V~~~~------~~~~~~~~l~~~~~~LkpgG~lv~~ 144 (198)
T PRK00377 109 NEKFDRIFIGG------GSEKLKEIISASWEIIKKGGRIVID 144 (198)
T ss_pred CCCCCEEEECC------CcccHHHHHHHHHHHcCCCcEEEEE
Confidence 36899999743 2234778899999999999999863
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.47 E-value=1e-12 Score=109.56 Aligned_cols=111 Identities=23% Similarity=0.357 Sum_probs=87.6
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccc-c-CC
Q 014247 101 RAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDV-E-ID 176 (428)
Q Consensus 101 ~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l-~-~~ 176 (428)
...+...+...++.+|||+|||+|.++..+++. +..+|+++|++ .+++.+++++...++. +++++.+|+... + ..
T Consensus 8 ~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 86 (124)
T TIGR02469 8 RALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVS-NIVIVEGDAPEALEDSL 86 (124)
T ss_pred HHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCC-ceEEEeccccccChhhc
Confidence 333445555567789999999999999999987 34699999999 9999999998888776 489999887652 2 23
Q ss_pred CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccC
Q 014247 177 EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 177 ~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
++||+|++.. . ......+++.+.++|+|||.+++..
T Consensus 87 ~~~D~v~~~~---~---~~~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 87 PEPDRVFIGG---S---GGLLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred CCCCEEEECC---c---chhHHHHHHHHHHHcCCCCEEEEEe
Confidence 7899999853 1 1235688999999999999998754
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.8e-13 Score=122.00 Aligned_cols=169 Identities=25% Similarity=0.210 Sum_probs=115.5
Q ss_pred ChhhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccc
Q 014247 93 DRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVE 171 (428)
Q Consensus 93 d~~r~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~ 171 (428)
+..|.+.+.+.+........+.+|||+|||+|.++..+++.+. +|+++|++ .++..+++++..++.. ++.+...|+.
T Consensus 26 ~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~ 103 (224)
T TIGR01983 26 NPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLHAKKDPLL-KIEYRCTSVE 103 (224)
T ss_pred hHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHH
Confidence 3445555555555432234578999999999999999988866 79999999 9999999888776653 4889999988
Q ss_pred cccCC--CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhh-c-----cC
Q 014247 172 DVEID--EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWR-N-----VY 243 (428)
Q Consensus 172 ~l~~~--~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~ 243 (428)
+++.. ++||+|++.. .+.+..++..+++.+.++|+|||.+++.................+....|. . ..
T Consensus 104 ~~~~~~~~~~D~i~~~~---~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (224)
T TIGR01983 104 DLAEKGAKSFDVVTCME---VLEHVPDPQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRIVPKGTHDWEK 180 (224)
T ss_pred HhhcCCCCCccEEEehh---HHHhCCCHHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHhhhhhhhcCCCCcCChhh
Confidence 76543 7899999855 566677889999999999999999887543210000000000000000000 0 11
Q ss_pred CCCcchhHHHHHhcCCCCceEEe
Q 014247 244 GIDMSAMMPLAKQCAFEEPSVET 266 (428)
Q Consensus 244 ~~~~~~l~~~l~~~Gf~~~~~~~ 266 (428)
.++...+.++++++||+...+..
T Consensus 181 ~~~~~~l~~~l~~~G~~i~~~~~ 203 (224)
T TIGR01983 181 FIKPSELTSWLESAGLRVKDVKG 203 (224)
T ss_pred cCCHHHHHHHHHHcCCeeeeeee
Confidence 23566789999999999876553
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.5e-12 Score=126.29 Aligned_cols=156 Identities=12% Similarity=0.102 Sum_probs=110.4
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEeChHHHHHHHHHHHHCCCCCcEEEEEcccccccCCCce
Q 014247 101 RAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAG-AKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEV 179 (428)
Q Consensus 101 ~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g-~~~V~giD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~ 179 (428)
.+.+.+.....++.+|||||||+|.++..++++. ..+++++|...+++.+++++...++.++++++.+|+.+.+.+ .+
T Consensus 138 ~~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~-~~ 216 (306)
T TIGR02716 138 IQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYP-EA 216 (306)
T ss_pred HHHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCC-CC
Confidence 4455566666778899999999999999999873 348999998889999999999999988999999999865554 47
Q ss_pred eEEEEecchhhhcch--hhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhh-hh-----cc-CCCCcchh
Q 014247 180 DVIISEWMGYMLLYE--SMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDF-WR-----NV-YGIDMSAM 250 (428)
Q Consensus 180 DlVvs~~~~~~l~~~--~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~-~~~~~~~l 250 (428)
|+|++.. +++.. .....+++++++.|+|||++++....+.- + ....+...... .. .. .+....++
T Consensus 217 D~v~~~~---~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 290 (306)
T TIGR02716 217 DAVLFCR---ILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDD-P--ENPNFDYLSHYILGAGMPFSVLGFKEQARY 290 (306)
T ss_pred CEEEeEh---hhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCC-C--CCchhhHHHHHHHHcccccccccCCCHHHH
Confidence 9988644 44433 33567999999999999999876532210 1 11111100000 00 01 11235689
Q ss_pred HHHHHhcCCCCce
Q 014247 251 MPLAKQCAFEEPS 263 (428)
Q Consensus 251 ~~~l~~~Gf~~~~ 263 (428)
..+++++||+.+.
T Consensus 291 ~~ll~~aGf~~v~ 303 (306)
T TIGR02716 291 KEILESLGYKDVT 303 (306)
T ss_pred HHHHHHcCCCeeE
Confidence 9999999998764
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.4e-13 Score=117.88 Aligned_cols=129 Identities=19% Similarity=0.172 Sum_probs=96.6
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEEecch
Q 014247 110 FIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWMG 188 (428)
Q Consensus 110 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~~~~ 188 (428)
..++.+|||+|||+|.++..+++.+. +|+++|++ .+++.+++++..++. +++++.+|+.+.. .++||+|+++...
T Consensus 17 ~~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~-~~~fD~Vi~n~p~ 92 (179)
T TIGR00537 17 ELKPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNV--GLDVVMTDLFKGV-RGKFDVILFNPPY 92 (179)
T ss_pred hcCCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCC--ceEEEEccccccc-CCcccEEEECCCC
Confidence 35668999999999999999999877 99999999 999999999988776 4899999987654 4689999998632
Q ss_pred hhhcc------------------hhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhhccCCCCcchh
Q 014247 189 YMLLY------------------ESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAM 250 (428)
Q Consensus 189 ~~l~~------------------~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 250 (428)
+.... ......+++++.++|+|||.+++..... -+...+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~-----------------------~~~~~~ 149 (179)
T TIGR00537 93 LPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSL-----------------------NGEPDT 149 (179)
T ss_pred CCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEecc-----------------------CChHHH
Confidence 11110 1125678999999999999988632110 123456
Q ss_pred HHHHHhcCCCCceEE
Q 014247 251 MPLAKQCAFEEPSVE 265 (428)
Q Consensus 251 ~~~l~~~Gf~~~~~~ 265 (428)
...+++.||....+.
T Consensus 150 ~~~l~~~gf~~~~~~ 164 (179)
T TIGR00537 150 FDKLDERGFRYEIVA 164 (179)
T ss_pred HHHHHhCCCeEEEEE
Confidence 677788898765443
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.7e-13 Score=110.43 Aligned_cols=95 Identities=24% Similarity=0.398 Sum_probs=76.2
Q ss_pred EEEEcCCCcHHHHHHHHcC----CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC-CceeEEEEecchh
Q 014247 116 VVDVGCGTGILSIFCAQAG----AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID-EEVDVIISEWMGY 189 (428)
Q Consensus 116 VLDiGcGtG~ls~~la~~g----~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~-~~~DlVvs~~~~~ 189 (428)
|||+|||+|..+..+++.. ..+++|+|+| +|++.++++....+. +++++++|+.+++.. ++||+|++.....
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l~~~~~~~D~v~~~~~~~ 78 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDLPFSDGKFDLVVCSGLSL 78 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCHHHHSSSEEEEEE-TTGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHCcccCCCeeEEEEcCCcc
Confidence 7999999999999999873 2699999999 999999999887666 589999999998753 7999999943212
Q ss_pred hhcchhhHHHHHHHHhcccccCe
Q 014247 190 MLLYESMLGSVITARDRWLKRGG 212 (428)
Q Consensus 190 ~l~~~~~~~~~l~~~~~~LkpgG 212 (428)
..........+++++.++|+|||
T Consensus 79 ~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 79 HHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhCCCC
Confidence 23455678999999999999998
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.47 E-value=1e-12 Score=123.66 Aligned_cols=129 Identities=29% Similarity=0.400 Sum_probs=95.8
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCC
Q 014247 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDE 177 (428)
Q Consensus 99 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~ 177 (428)
...+.+.... .++.+|||+|||+|.++..+++.|+.+|+|+|++ .+++.|++++..+++.+++.+..++.
T Consensus 108 ~~l~~l~~~~--~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~------- 178 (250)
T PRK00517 108 LCLEALEKLV--LPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDL------- 178 (250)
T ss_pred HHHHHHHhhc--CCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC-------
Confidence 3344444432 5789999999999999999998888789999999 99999999999988865565554432
Q ss_pred ceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhhccCCCCcchhHHHHHhc
Q 014247 178 EVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAMMPLAKQC 257 (428)
Q Consensus 178 ~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 257 (428)
+||+|+++... ..+..++..+.++|||||.++++.... -+...+...+.+.
T Consensus 179 ~fD~Vvani~~------~~~~~l~~~~~~~LkpgG~lilsgi~~-----------------------~~~~~v~~~l~~~ 229 (250)
T PRK00517 179 KADVIVANILA------NPLLELAPDLARLLKPGGRLILSGILE-----------------------EQADEVLEAYEEA 229 (250)
T ss_pred CcCEEEEcCcH------HHHHHHHHHHHHhcCCCcEEEEEECcH-----------------------hhHHHHHHHHHHC
Confidence 79999987521 235678889999999999999753210 1234566777888
Q ss_pred CCCCceEE
Q 014247 258 AFEEPSVE 265 (428)
Q Consensus 258 Gf~~~~~~ 265 (428)
||......
T Consensus 230 Gf~~~~~~ 237 (250)
T PRK00517 230 GFTLDEVL 237 (250)
T ss_pred CCEEEEEE
Confidence 99765443
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.3e-13 Score=131.66 Aligned_cols=161 Identities=21% Similarity=0.205 Sum_probs=108.7
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCc
Q 014247 101 RAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEE 178 (428)
Q Consensus 101 ~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~ 178 (428)
.+.+.+.+...++.+|||||||+|.++..+++. |+ +|+|+|+| ++++.|++++. ++ .+++...|..++ +++
T Consensus 156 ~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~-~V~giDlS~~~l~~A~~~~~--~l--~v~~~~~D~~~l--~~~ 228 (383)
T PRK11705 156 LDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGV-SVVGVTISAEQQKLAQERCA--GL--PVEIRLQDYRDL--NGQ 228 (383)
T ss_pred HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhc--cC--eEEEEECchhhc--CCC
Confidence 345555666778999999999999999999986 55 89999999 99999998874 33 388888888776 478
Q ss_pred eeEEEEecchhhhcch--hhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhhccCCCCcchhHHHHHh
Q 014247 179 VDVIISEWMGYMLLYE--SMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAMMPLAKQ 256 (428)
Q Consensus 179 ~DlVvs~~~~~~l~~~--~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 256 (428)
||+|++..+ +.+. ..++.+++++.++|||||.+++......... .....+... ..|...+-..++.+...++
T Consensus 229 fD~Ivs~~~---~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~-~~~~~~i~~-yifp~g~lps~~~i~~~~~- 302 (383)
T PRK11705 229 FDRIVSVGM---FEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTD-TNVDPWINK-YIFPNGCLPSVRQIAQASE- 302 (383)
T ss_pred CCEEEEeCc---hhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCC-CCCCCCcee-eecCCCcCCCHHHHHHHHH-
Confidence 999998653 3332 3468899999999999999987643211100 001111100 0111112234556665544
Q ss_pred cCCCCceEEeecCCcccc
Q 014247 257 CAFEEPSVETITGENVLT 274 (428)
Q Consensus 257 ~Gf~~~~~~~~~~~~~ls 274 (428)
.||....++.+..++..+
T Consensus 303 ~~~~v~d~~~~~~hy~~T 320 (383)
T PRK11705 303 GLFVMEDWHNFGADYDRT 320 (383)
T ss_pred CCcEEEEEecChhhHHHH
Confidence 588887777777665443
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.4e-13 Score=123.85 Aligned_cols=108 Identities=22% Similarity=0.301 Sum_probs=90.7
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC---CceeEEE
Q 014247 109 SFIEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID---EEVDVII 183 (428)
Q Consensus 109 ~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~---~~~DlVv 183 (428)
......+|||+|||+|.+++++|++ ...+++|||+. ++++.|+++++.|+++++|+++++|+.++... .+||+|+
T Consensus 41 ~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii 120 (248)
T COG4123 41 PVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLII 120 (248)
T ss_pred ccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEE
Confidence 3345789999999999999999998 54699999999 99999999999999999999999999987543 5799999
Q ss_pred Eecchhhhcc---------------hhhHHHHHHHHhcccccCeEEEc
Q 014247 184 SEWMGYMLLY---------------ESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 184 s~~~~~~l~~---------------~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
|++..+-... ..+++.+++...++|||||.+.+
T Consensus 121 ~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~ 168 (248)
T COG4123 121 CNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAF 168 (248)
T ss_pred eCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEE
Confidence 9984221111 12478999999999999999875
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.2e-12 Score=125.53 Aligned_cols=101 Identities=30% Similarity=0.475 Sum_probs=84.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEEecchh
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWMGY 189 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~~~~~ 189 (428)
.++++|||+|||+|.++..+++.|+.+|+|+|++ .+++.|++++..+++.+++.+...+.... ..++||+|+++.+.
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~-~~~~fDlVvan~~~- 235 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP-IEGKADVIVANILA- 235 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc-cCCCceEEEEecCH-
Confidence 5789999999999999999999888899999999 99999999999999887788887764332 24789999997632
Q ss_pred hhcchhhHHHHHHHHhcccccCeEEEccC
Q 014247 190 MLLYESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 190 ~l~~~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
..+..++..+.++|+|||.++++.
T Consensus 236 -----~~l~~ll~~~~~~LkpgG~li~sg 259 (288)
T TIGR00406 236 -----EVIKELYPQFSRLVKPGGWLILSG 259 (288)
T ss_pred -----HHHHHHHHHHHHHcCCCcEEEEEe
Confidence 235678899999999999998753
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.9e-13 Score=110.52 Aligned_cols=104 Identities=29% Similarity=0.443 Sum_probs=85.1
Q ss_pred CCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc--C-CCceeEEEEecch
Q 014247 113 GKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE--I-DEEVDVIISEWMG 188 (428)
Q Consensus 113 ~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~--~-~~~~DlVvs~~~~ 188 (428)
|.+|||+|||+|.++..+++.+..+++|+|++ ..++.|++++..+++.++++++++|+.+.. . .++||+|++++..
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 56899999999999999999985699999999 899999999999999888999999998875 3 4899999998742
Q ss_pred hhhc-----chhhHHHHHHHHhcccccCeEEEc
Q 014247 189 YMLL-----YESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 189 ~~l~-----~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
.... .......+++++.++|+|||.+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~ 113 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVF 113 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEE
Confidence 2111 112457889999999999999875
|
... |
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.8e-12 Score=119.45 Aligned_cols=140 Identities=19% Similarity=0.238 Sum_probs=95.7
Q ss_pred ccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccc----cCCCcee
Q 014247 107 NQSFIEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDV----EIDEEVD 180 (428)
Q Consensus 107 ~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l----~~~~~~D 180 (428)
.+...++.+|||+|||+|.++..+++. +..+|+|+|++ .|++.+.++++.. .++.++.+|+.+. .+.++||
T Consensus 67 ~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~~~~~~~l~~~~D 143 (226)
T PRK04266 67 NFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER---KNIIPILADARKPERYAHVVEKVD 143 (226)
T ss_pred hCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCCcchhhhccccCC
Confidence 466778999999999999999999987 33589999999 8998877776543 3589999998752 2246799
Q ss_pred EEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhhccCCCCcchhHHHHHhcCCC
Q 014247 181 VIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAMMPLAKQCAFE 260 (428)
Q Consensus 181 lVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~ 260 (428)
+|+++. . .......+++++.++|||||.+++... .-++... ..... .......+++++||+
T Consensus 144 ~i~~d~---~--~p~~~~~~L~~~~r~LKpGG~lvI~v~---~~~~d~~---~~~~~--------~~~~~~~~l~~aGF~ 204 (226)
T PRK04266 144 VIYQDV---A--QPNQAEIAIDNAEFFLKDGGYLLLAIK---ARSIDVT---KDPKE--------IFKEEIRKLEEGGFE 204 (226)
T ss_pred EEEECC---C--ChhHHHHHHHHHHHhcCCCcEEEEEEe---cccccCc---CCHHH--------HHHHHHHHHHHcCCe
Confidence 999753 1 111234568999999999999987411 1011000 00000 012345788899999
Q ss_pred CceEEeec
Q 014247 261 EPSVETIT 268 (428)
Q Consensus 261 ~~~~~~~~ 268 (428)
......+.
T Consensus 205 ~i~~~~l~ 212 (226)
T PRK04266 205 ILEVVDLE 212 (226)
T ss_pred EEEEEcCC
Confidence 87665543
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.4e-12 Score=118.88 Aligned_cols=109 Identities=25% Similarity=0.313 Sum_probs=86.1
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC
Q 014247 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-G-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI 175 (428)
Q Consensus 99 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~ 175 (428)
.....+.+.+...++.+|||||||+|..+..+++. + ..+|+++|++ ++++.|++++..+++.++++++.+|+.+...
T Consensus 59 ~~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~ 138 (205)
T PRK13944 59 HMVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLE 138 (205)
T ss_pred HHHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCc
Confidence 34455566666678899999999999999988875 2 3589999999 9999999999998887789999999876433
Q ss_pred -CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 176 -DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 176 -~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
..+||+|++.. .+. .+..++.+.|+|||++++
T Consensus 139 ~~~~fD~Ii~~~---~~~------~~~~~l~~~L~~gG~lvi 171 (205)
T PRK13944 139 KHAPFDAIIVTA---AAS------TIPSALVRQLKDGGVLVI 171 (205)
T ss_pred cCCCccEEEEcc---Ccc------hhhHHHHHhcCcCcEEEE
Confidence 37899999864 222 222466788999999975
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.6e-12 Score=119.33 Aligned_cols=146 Identities=19% Similarity=0.229 Sum_probs=100.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEEecchh
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWMGY 189 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~~~~~ 189 (428)
.++.+|||||||+|.++..+++.+. +|+|+|+| .+++.|+++....+..+++.+..+|+... .++||+|++..
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~fD~v~~~~--- 135 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESL--LGRFDTVVCLD--- 135 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhc--cCCcCEEEEcc---
Confidence 5678999999999999999999876 69999999 99999999988877766799999995443 37899999854
Q ss_pred hhcc--hhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhh------ccCCCCcchhHHHHHhcCCCC
Q 014247 190 MLLY--ESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWR------NVYGIDMSAMMPLAKQCAFEE 261 (428)
Q Consensus 190 ~l~~--~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~l~~~Gf~~ 261 (428)
.+++ ......+++.+.+++++++.+........ ..........|. ....++...+.+++.++||+.
T Consensus 136 ~l~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~~~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~ 209 (230)
T PRK07580 136 VLIHYPQEDAARMLAHLASLTRGSLIFTFAPYTPL------LALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKV 209 (230)
T ss_pred hhhcCCHHHHHHHHHHHHhhcCCeEEEEECCccHH------HHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCce
Confidence 3333 34577888888887755554432211100 000000111111 123345678889999999998
Q ss_pred ceEEeec
Q 014247 262 PSVETIT 268 (428)
Q Consensus 262 ~~~~~~~ 268 (428)
..+..+.
T Consensus 210 ~~~~~~~ 216 (230)
T PRK07580 210 VRTERIS 216 (230)
T ss_pred Eeeeecc
Confidence 7766543
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.2e-12 Score=127.00 Aligned_cols=115 Identities=17% Similarity=0.132 Sum_probs=88.2
Q ss_pred HHHhccCCCCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEeCh-HHHHHHHHHHHHCCCC--CcEEEEEcccccccCCCc
Q 014247 103 AIMQNQSFIEGKVVVDVGCGTGILSIFCAQAG-AKRVYAVDAS-DIAVQANEVVKANNLT--DKVIVLHGRVEDVEIDEE 178 (428)
Q Consensus 103 ~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g-~~~V~giD~s-~~~~~a~~~~~~~~~~--~~v~~~~~d~~~l~~~~~ 178 (428)
.+.+.+....+.+|||+|||+|.++..+++.+ ..+|+++|.| .+++.|+++++.|+.. .+++++..|+.+...+.+
T Consensus 219 llL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~~~~ 298 (378)
T PRK15001 219 FFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPFR 298 (378)
T ss_pred HHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCCCCC
Confidence 34555544445699999999999999999874 4599999999 9999999999888754 368999988765333468
Q ss_pred eeEEEEecchhhhc--chhhHHHHHHHHhcccccCeEEEcc
Q 014247 179 VDVIISEWMGYMLL--YESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 179 ~DlVvs~~~~~~l~--~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
||+|+|++..+... .......++..+.++|+|||.+++.
T Consensus 299 fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV 339 (378)
T PRK15001 299 FNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIV 339 (378)
T ss_pred EEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEE
Confidence 99999987433221 1233578899999999999998863
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.2e-12 Score=112.88 Aligned_cols=129 Identities=26% Similarity=0.325 Sum_probs=96.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCc-EEEEEcccccccCCCceeEEEEecch
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDK-VIVLHGRVEDVEIDEEVDVIISEWMG 188 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~-v~~~~~d~~~l~~~~~~DlVvs~~~~ 188 (428)
.++++|||+|||+|.++..+++.+ .+|+|+|.+ .+++.+++++..+++.++ +.++++|+.+...+.+||+|+++...
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p~ 100 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKNG-KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPPY 100 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhhc-ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCCc
Confidence 577899999999999999999985 599999999 999999999988887654 88999987764444689999987521
Q ss_pred hh--------------hc----chhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhhccCCCCcchh
Q 014247 189 YM--------------LL----YESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAM 250 (428)
Q Consensus 189 ~~--------------l~----~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 250 (428)
.. +. ....+..+++++.++|+|||.+++.... ......+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~-----------------------~~~~~~l 157 (188)
T PRK14968 101 LPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS-----------------------LTGEDEV 157 (188)
T ss_pred CCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc-----------------------cCCHHHH
Confidence 10 00 1223567899999999999988753211 0123456
Q ss_pred HHHHHhcCCCCce
Q 014247 251 MPLAKQCAFEEPS 263 (428)
Q Consensus 251 ~~~l~~~Gf~~~~ 263 (428)
..++.++||....
T Consensus 158 ~~~~~~~g~~~~~ 170 (188)
T PRK14968 158 LEYLEKLGFEAEV 170 (188)
T ss_pred HHHHHHCCCeeee
Confidence 7788888987643
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.40 E-value=5.4e-14 Score=112.83 Aligned_cols=94 Identities=27% Similarity=0.335 Sum_probs=61.7
Q ss_pred EEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccc---cCCCceeEEEEecchhhh
Q 014247 117 VDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDV---EIDEEVDVIISEWMGYML 191 (428)
Q Consensus 117 LDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l---~~~~~~DlVvs~~~~~~l 191 (428)
||||||+|.++..+++. ...+++|+|+| .|++.|++++....... ...+..+..+. ...++||+|++.. ++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~fD~V~~~~---vl 76 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDN-FERLRFDVLDLFDYDPPESFDLVVASN---VL 76 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---CCC----SEEEEE----TT
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcc-eeEEEeecCChhhcccccccceehhhh---hH
Confidence 79999999999998887 44499999999 99988888888765433 33444333332 2236999999865 66
Q ss_pred cchhhHHHHHHHHhcccccCeEE
Q 014247 192 LYESMLGSVITARDRWLKRGGLI 214 (428)
Q Consensus 192 ~~~~~~~~~l~~~~~~LkpgG~l 214 (428)
++..++..+++.+.++|+|||+|
T Consensus 77 ~~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 77 HHLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S--S-HHHHHHHHTTT-TSS-EE
T ss_pred hhhhhHHHHHHHHHHHcCCCCCC
Confidence 67788999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.6e-12 Score=117.95 Aligned_cols=89 Identities=22% Similarity=0.217 Sum_probs=75.6
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC-CceeEEEEecchh
Q 014247 112 EGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID-EEVDVIISEWMGY 189 (428)
Q Consensus 112 ~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~-~~~DlVvs~~~~~ 189 (428)
++.+|||||||||.++..+++....+|+|+|+| +|++.|++. ..++++|+++++++ ++||+|++..
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~---------~~~~~~d~~~lp~~d~sfD~v~~~~--- 118 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVA---------DDKVVGSFEALPFRDKSFDVVMSSF--- 118 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhc---------cceEEechhhCCCCCCCEEEEEecC---
Confidence 478999999999999999998732489999999 999988753 23578899998875 8999999865
Q ss_pred hhcchhhHHHHHHHHhcccccCe
Q 014247 190 MLLYESMLGSVITARDRWLKRGG 212 (428)
Q Consensus 190 ~l~~~~~~~~~l~~~~~~LkpgG 212 (428)
.+++..+++.+++++.|+|||.+
T Consensus 119 ~l~~~~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 119 ALHASDNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred hhhccCCHHHHHHHHHHHhcCce
Confidence 67777889999999999999954
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.3e-12 Score=117.48 Aligned_cols=108 Identities=20% Similarity=0.199 Sum_probs=84.8
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCC--CeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC-
Q 014247 100 YRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGA--KRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI- 175 (428)
Q Consensus 100 ~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~--~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~- 175 (428)
....+.+.+...++.+|||||||+|.++..+++... .+|+++|++ .+++.|++++..+++. +++++++|+.+...
T Consensus 65 ~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~-~v~~~~~d~~~~~~~ 143 (215)
T TIGR00080 65 MVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLD-NVIVIVGDGTQGWEP 143 (215)
T ss_pred HHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCC-CeEEEECCcccCCcc
Confidence 344555666678899999999999999999998732 369999999 9999999999999884 59999999876433
Q ss_pred CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 176 DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 176 ~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
..+||+|++.. .. ..+...+.+.|+|||++++.
T Consensus 144 ~~~fD~Ii~~~---~~------~~~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 144 LAPYDRIYVTA---AG------PKIPEALIDQLKEGGILVMP 176 (215)
T ss_pred cCCCCEEEEcC---Cc------ccccHHHHHhcCcCcEEEEE
Confidence 36899999754 11 22334567889999998853
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.39 E-value=9.7e-12 Score=115.86 Aligned_cols=138 Identities=25% Similarity=0.332 Sum_probs=101.5
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC-CceeEEEEecc
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAG-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID-EEVDVIISEWM 187 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~-~~~DlVvs~~~ 187 (428)
..+.+|||+|||+|.++..+++.+ ..+|+++|++ .++..+++... .++.++.+|+.+.+++ ++||+|++..
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~~~~~~fD~vi~~~- 106 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-----ENVQFICGDAEKLPLEDSSFDLIVSNL- 106 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-----CCCeEEecchhhCCCCCCceeEEEEhh-
Confidence 345799999999999999999875 3478999999 88888876543 2588999999988754 7899999866
Q ss_pred hhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhh--ccCCCCcchhHHHHHhcCCCCceEE
Q 014247 188 GYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWR--NVYGIDMSAMMPLAKQCAFEEPSVE 265 (428)
Q Consensus 188 ~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~~Gf~~~~~~ 265 (428)
.+++..++..++..+.++|+|||.+++...... ...+....+. .....+...+..++.++ |....+.
T Consensus 107 --~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-f~~~~~~ 175 (240)
T TIGR02072 107 --ALQWCDDLSQALSELARVLKPGGLLAFSTFGPG--------TLHELRQSFGQHGLRYLSLDELKALLKNS-FELLTLE 175 (240)
T ss_pred --hhhhccCHHHHHHHHHHHcCCCcEEEEEeCCcc--------CHHHHHHHHHHhccCCCCHHHHHHHHHHh-cCCcEEE
Confidence 666777899999999999999999987543211 1111111122 12234567788888887 8776554
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.3e-12 Score=124.25 Aligned_cols=117 Identities=24% Similarity=0.275 Sum_probs=94.5
Q ss_pred HHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC
Q 014247 98 ETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID 176 (428)
Q Consensus 98 ~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~ 176 (428)
..+...+.......++.+|||+|||+|.++..++..+. +|+|+|++ .|+..|+++++..++.+ +.++++|+.+++..
T Consensus 168 ~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~-~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~l~~~ 245 (329)
T TIGR01177 168 PKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGA-KVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATKLPLS 245 (329)
T ss_pred HHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCC-eEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhcCCcc
Confidence 34555666665667889999999999999998888766 89999999 99999999999998876 89999999998764
Q ss_pred -CceeEEEEecchhh---hc---chhhHHHHHHHHhcccccCeEEEc
Q 014247 177 -EEVDVIISEWMGYM---LL---YESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 177 -~~~DlVvs~~~~~~---l~---~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
++||+|++++.... .. .......+++.+.++|+|||++++
T Consensus 246 ~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~ 292 (329)
T TIGR01177 246 SESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVY 292 (329)
T ss_pred cCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEE
Confidence 78999999853111 11 112357899999999999999875
|
This family is found exclusively in the Archaea. |
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.6e-12 Score=116.16 Aligned_cols=108 Identities=20% Similarity=0.231 Sum_probs=84.5
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CC-CeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC
Q 014247 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-GA-KRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI 175 (428)
Q Consensus 99 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~-~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~ 175 (428)
.....+.+.+...++.+|||||||+|.++..+++. +. .+|+++|++ ++++.|+++++..++. +++++++|......
T Consensus 63 ~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~-~v~~~~gd~~~~~~ 141 (212)
T PRK13942 63 HMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYD-NVEVIVGDGTLGYE 141 (212)
T ss_pred HHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEECCcccCCC
Confidence 34445556666788999999999999999998886 32 499999999 9999999999988875 59999999876443
Q ss_pred -CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 176 -DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 176 -~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
..+||+|++.. ... .+...+.+.|||||++++
T Consensus 142 ~~~~fD~I~~~~---~~~------~~~~~l~~~LkpgG~lvi 174 (212)
T PRK13942 142 ENAPYDRIYVTA---AGP------DIPKPLIEQLKDGGIMVI 174 (212)
T ss_pred cCCCcCEEEECC---Ccc------cchHHHHHhhCCCcEEEE
Confidence 37899999854 221 223456678999999875
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.8e-12 Score=116.54 Aligned_cols=106 Identities=27% Similarity=0.274 Sum_probs=84.6
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEEecc
Q 014247 109 SFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWM 187 (428)
Q Consensus 109 ~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~~~ 187 (428)
...++.+|||+|||+|.++..+++.++.+|+++|++ .++..+++++..+++ +++++++|+.+....++||+|+++..
T Consensus 33 ~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~d~~~~~~~~~fD~Vi~npP 110 (223)
T PRK14967 33 GLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV--DVDVRRGDWARAVEFRPFDVVVSNPP 110 (223)
T ss_pred ccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC--eeEEEECchhhhccCCCeeEEEECCC
Confidence 346778999999999999999999877799999999 999999999888776 48899999876533478999999852
Q ss_pred hhhhc-------------------chhhHHHHHHHHhcccccCeEEEcc
Q 014247 188 GYMLL-------------------YESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 188 ~~~l~-------------------~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
+... ....+..+++++.++|||||++++.
T Consensus 111 -y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~ 158 (223)
T PRK14967 111 -YVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLV 158 (223)
T ss_pred -CCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 1111 0112567888899999999999853
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.4e-12 Score=116.15 Aligned_cols=106 Identities=19% Similarity=0.206 Sum_probs=83.3
Q ss_pred CCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccc-cccc--C-CCceeEEEEe
Q 014247 112 EGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRV-EDVE--I-DEEVDVIISE 185 (428)
Q Consensus 112 ~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~-~~l~--~-~~~~DlVvs~ 185 (428)
++.+|||+|||+|.++..+++. +..+|+|+|+| .+++.|++++..+++. ++.++++|+ ..++ + +++||+|++.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~-~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLT-NLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCC-CEEEEecCHHHHHHHHcCccccceEEEE
Confidence 5689999999999999999886 34589999999 9999999999888874 599999999 6665 4 4789999985
Q ss_pred cchhhh---cch--hhHHHHHHHHhcccccCeEEEccC
Q 014247 186 WMGYML---LYE--SMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 186 ~~~~~l---~~~--~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
...... .+. .....+++++.++|+|||.+++..
T Consensus 119 ~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~ 156 (202)
T PRK00121 119 FPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT 156 (202)
T ss_pred CCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc
Confidence 421110 000 124778999999999999998643
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.2e-11 Score=118.32 Aligned_cols=107 Identities=22% Similarity=0.281 Sum_probs=84.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEEecch
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAG-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWMG 188 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~~~~ 188 (428)
.++.+|||+|||+|.++..+++.. ..+|+|+|+| .+++.|++++..+++.++++++++|+.+....++||+|++++.-
T Consensus 120 ~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy 199 (284)
T TIGR03533 120 EPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPY 199 (284)
T ss_pred CCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCC
Confidence 345799999999999999999863 3489999999 99999999999999887899999998653223589999997521
Q ss_pred h----------hhcch------------hhHHHHHHHHhcccccCeEEEcc
Q 014247 189 Y----------MLLYE------------SMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 189 ~----------~l~~~------------~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
. .+.++ .....++..+.++|+|||++++.
T Consensus 200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e 250 (284)
T TIGR03533 200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVE 250 (284)
T ss_pred CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 0 01111 12467788899999999999864
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=8.8e-13 Score=113.39 Aligned_cols=136 Identities=29% Similarity=0.411 Sum_probs=115.1
Q ss_pred hhhhhhccChhhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcE
Q 014247 85 GIHEEMIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKV 163 (428)
Q Consensus 85 ~~~~~~~~d~~r~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v 163 (428)
.||.+++.|..|...|..+|.+... ..+.|+|+|+|.+++.+|++ +++|++||.+ .....|.+++.-+|+. ++
T Consensus 9 ~yh~~LL~D~eRlavF~~ai~~va~----d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~~-n~ 82 (252)
T COG4076 9 SYHLDLLRDVERLAVFTSAIAEVAE----DTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGDV-NW 82 (252)
T ss_pred hhHhhhhhhHHHHHHHHHHHHHHhh----hceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCCc-ce
Confidence 4788899999999999999988653 78999999999999999998 8899999999 7888898888777775 49
Q ss_pred EEEEcccccccCCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCC
Q 014247 164 IVLHGRVEDVEIDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTH 228 (428)
Q Consensus 164 ~~~~~d~~~l~~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~ 228 (428)
+++.+|+.+..+ +..|+|+|+.+...+..+. .-.++.++..+|+.++.++|.....-+.|+..
T Consensus 83 evv~gDA~~y~f-e~ADvvicEmlDTaLi~E~-qVpV~n~vleFLr~d~tiiPq~v~~~a~pv~~ 145 (252)
T COG4076 83 EVVVGDARDYDF-ENADVVICEMLDTALIEEK-QVPVINAVLEFLRYDPTIIPQEVRIGANPVRR 145 (252)
T ss_pred EEEecccccccc-cccceeHHHHhhHHhhccc-ccHHHHHHHHHhhcCCccccHHHhhccCcccc
Confidence 999999999888 7899999998887777666 45567777789999999999876555555543
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.1e-12 Score=115.57 Aligned_cols=109 Identities=15% Similarity=0.243 Sum_probs=93.7
Q ss_pred HHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeE
Q 014247 104 IMQNQSFIEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDV 181 (428)
Q Consensus 104 i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~Dl 181 (428)
+...+...+..+|.|+|||+|..+..++++ +...|+|+|.| +|++.|+++. .+++|..+|+.++..+.+.|+
T Consensus 22 Lla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl------p~~~f~~aDl~~w~p~~~~dl 95 (257)
T COG4106 22 LLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL------PDATFEEADLRTWKPEQPTDL 95 (257)
T ss_pred HHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC------CCCceecccHhhcCCCCccch
Confidence 344556677789999999999999999998 55599999999 9999987663 248999999999998899999
Q ss_pred EEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCee
Q 014247 182 IISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATL 221 (428)
Q Consensus 182 Vvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 221 (428)
|+++. .+.|..+-.+++..+...|.|||.+....+..
T Consensus 96 lfaNA---vlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN 132 (257)
T COG4106 96 LFANA---VLQWLPDHPELLPRLVSQLAPGGVLAVQMPDN 132 (257)
T ss_pred hhhhh---hhhhccccHHHHHHHHHhhCCCceEEEECCCc
Confidence 99988 78888889999999999999999998765543
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.2e-11 Score=119.39 Aligned_cols=143 Identities=21% Similarity=0.203 Sum_probs=94.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCC----CCcEEEEEcccccccCCCceeEEEEe
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNL----TDKVIVLHGRVEDVEIDEEVDVIISE 185 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~----~~~v~~~~~d~~~l~~~~~~DlVvs~ 185 (428)
.++.+|||||||+|.++..+++.|. +|+|+|+| .|++.|++++...+. ..++.|..+|+.++ .++||+|+|.
T Consensus 143 ~~~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l--~~~fD~Vv~~ 219 (315)
T PLN02585 143 LAGVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL--SGKYDTVTCL 219 (315)
T ss_pred CCCCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc--CCCcCEEEEc
Confidence 3678999999999999999999876 89999999 999999998876421 23578999998765 4789999985
Q ss_pred cchhhhcchh--hHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhhc------cCCCCcchhHHHHHhc
Q 014247 186 WMGYMLLYES--MLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRN------VYGIDMSAMMPLAKQC 257 (428)
Q Consensus 186 ~~~~~l~~~~--~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~l~~~ 257 (428)
. .+.|.. ....+++.+.+ +.+||.++-..+.... ...+......|.. .|..+.+++..+++++
T Consensus 220 ~---vL~H~p~~~~~~ll~~l~~-l~~g~liIs~~p~~~~-----~~~l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~A 290 (315)
T PLN02585 220 D---VLIHYPQDKADGMIAHLAS-LAEKRLIISFAPKTLY-----YDILKRIGELFPGPSKATRAYLHAEADVERALKKA 290 (315)
T ss_pred C---EEEecCHHHHHHHHHHHHh-hcCCEEEEEeCCcchH-----HHHHHHHHhhcCCCCcCceeeeCCHHHHHHHHHHC
Confidence 4 333332 24456666664 4666665532221100 0001111111211 2334678899999999
Q ss_pred CCCCceEE
Q 014247 258 AFEEPSVE 265 (428)
Q Consensus 258 Gf~~~~~~ 265 (428)
||+....+
T Consensus 291 Gf~v~~~~ 298 (315)
T PLN02585 291 GWKVARRE 298 (315)
T ss_pred CCEEEEEE
Confidence 99865544
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=9.2e-12 Score=128.15 Aligned_cols=107 Identities=23% Similarity=0.384 Sum_probs=84.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc--C-CCceeEEEE
Q 014247 110 FIEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE--I-DEEVDVIIS 184 (428)
Q Consensus 110 ~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~--~-~~~~DlVvs 184 (428)
..++.+|||||||+|.++..+++. +..+|+|+|+| .|++.|+++....+ .++.++++|+.+++ + +++||+|++
T Consensus 416 ~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g--~~ie~I~gDa~dLp~~fedeSFDvVVs 493 (677)
T PRK06922 416 YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG--RSWNVIKGDAINLSSSFEKESVDTIVY 493 (677)
T ss_pred hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC--CCeEEEEcchHhCccccCCCCEEEEEE
Confidence 356889999999999998888875 34599999999 99999988766544 35889999998876 3 378999998
Q ss_pred ecchhhhc----------chhhHHHHHHHHhcccccCeEEEccC
Q 014247 185 EWMGYMLL----------YESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 185 ~~~~~~l~----------~~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
+.+.+.+. ...++..+++++.++|||||.+++..
T Consensus 494 n~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 494 SSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred chHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 76332211 12467899999999999999999854
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.3e-11 Score=116.93 Aligned_cols=105 Identities=21% Similarity=0.174 Sum_probs=83.7
Q ss_pred CCCCEEEEEcCCCcHH-HHHHH-Hc-CCCeEEEEeCh-HHHHHHHHHHHH-CCCCCcEEEEEcccccccC-CCceeEEEE
Q 014247 111 IEGKVVVDVGCGTGIL-SIFCA-QA-GAKRVYAVDAS-DIAVQANEVVKA-NNLTDKVIVLHGRVEDVEI-DEEVDVIIS 184 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~l-s~~la-~~-g~~~V~giD~s-~~~~~a~~~~~~-~~~~~~v~~~~~d~~~l~~-~~~~DlVvs 184 (428)
.++++|||||||.|.+ +..++ ++ ...+++++|.+ ++++.|++.+.. .++.++++|..+|+.++.. .++||+|++
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~ 201 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFL 201 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEE
Confidence 3778999999998754 33333 33 34489999999 999999999964 7888899999999988643 378999998
Q ss_pred ecchhhhcc-hhhHHHHHHHHhcccccCeEEEccC
Q 014247 185 EWMGYMLLY-ESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 185 ~~~~~~l~~-~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
.. .+.+ ..+...+++.+.+.|+|||.+++..
T Consensus 202 ~A---Li~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 202 AA---LVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred ec---ccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 63 2222 2568999999999999999999765
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.9e-12 Score=110.21 Aligned_cols=99 Identities=21% Similarity=0.267 Sum_probs=83.2
Q ss_pred CEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEE-EEEccccccc--CCCceeEEEEecchh
Q 014247 114 KVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVI-VLHGRVEDVE--IDEEVDVIISEWMGY 189 (428)
Q Consensus 114 ~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~-~~~~d~~~l~--~~~~~DlVvs~~~~~ 189 (428)
..||+||||||..-.+.--....+|+++|++ .|-+.|.+.++++...+ ++ |+.++.++++ .++++|+||+.+
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~-~~~fvva~ge~l~~l~d~s~DtVV~Tl--- 153 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQ-VERFVVADGENLPQLADGSYDTVVCTL--- 153 (252)
T ss_pred cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcc-eEEEEeechhcCcccccCCeeeEEEEE---
Confidence 4689999999987555543334499999999 99999999988885554 55 9999999998 459999999977
Q ss_pred hhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 190 MLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 190 ~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
++....++.+.|+++.++|+|||++++
T Consensus 154 vLCSve~~~k~L~e~~rlLRpgG~iif 180 (252)
T KOG4300|consen 154 VLCSVEDPVKQLNEVRRLLRPGGRIIF 180 (252)
T ss_pred EEeccCCHHHHHHHHHHhcCCCcEEEE
Confidence 777788899999999999999999875
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.3e-11 Score=105.26 Aligned_cols=113 Identities=23% Similarity=0.274 Sum_probs=93.4
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC
Q 014247 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAG-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID 176 (428)
Q Consensus 99 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~ 176 (428)
..+......+...++.+++|||||||.++..++..+ ..+|++||.+ +.++..++++++.+. ++++++.+++.+.-..
T Consensus 21 EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~-~n~~vv~g~Ap~~L~~ 99 (187)
T COG2242 21 EIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGV-DNLEVVEGDAPEALPD 99 (187)
T ss_pred HHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC-CcEEEEeccchHhhcC
Confidence 445556667788999999999999999999999664 4599999999 999999999999995 4599999998875333
Q ss_pred -CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCC
Q 014247 177 -EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYA 219 (428)
Q Consensus 177 -~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 219 (428)
.++|.|+... . ..++.+++.+...|+|||+++....
T Consensus 100 ~~~~daiFIGG------g-~~i~~ile~~~~~l~~ggrlV~nai 136 (187)
T COG2242 100 LPSPDAIFIGG------G-GNIEEILEAAWERLKPGGRLVANAI 136 (187)
T ss_pred CCCCCEEEECC------C-CCHHHHHHHHHHHcCcCCeEEEEee
Confidence 3799999643 2 4588999999999999999996543
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.7e-11 Score=118.57 Aligned_cols=124 Identities=23% Similarity=0.238 Sum_probs=92.2
Q ss_pred hhccChhhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEE
Q 014247 89 EMIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVL 166 (428)
Q Consensus 89 ~~~~d~~r~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~ 166 (428)
..+-.+..++.+.+.+...+ .++.+|||+|||+|.++..+++. +..+|+|+|+| .+++.|+++++.++. +++++
T Consensus 230 ~vLIPRpeTE~LVe~aL~~l--~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~--rV~fi 305 (423)
T PRK14966 230 NVLIPRPETEHLVEAVLARL--PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA--RVEFA 305 (423)
T ss_pred CccCCCccHHHHHHHhhhcc--CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--cEEEE
Confidence 34445566677777776654 35679999999999999998875 45589999999 999999999988765 69999
Q ss_pred EcccccccC--CCceeEEEEecchhh------------------hc----chhhHHHHHHHHhcccccCeEEEc
Q 014247 167 HGRVEDVEI--DEEVDVIISEWMGYM------------------LL----YESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 167 ~~d~~~l~~--~~~~DlVvs~~~~~~------------------l~----~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
++|+.+... .++||+|+|++.-.. +. .......+++.+.+.|+|||.+++
T Consensus 306 ~gDl~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lil 379 (423)
T PRK14966 306 HGSWFDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLL 379 (423)
T ss_pred EcchhccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEE
Confidence 999865432 368999999873100 00 011245677777889999999875
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.1e-11 Score=111.06 Aligned_cols=109 Identities=26% Similarity=0.353 Sum_probs=96.9
Q ss_pred HHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCc
Q 014247 102 AAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-G-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEE 178 (428)
Q Consensus 102 ~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~ 178 (428)
..|...+...+|.+|||.|.|+|.++..+|++ | ..+|+..|+- +.++.|+++++..++.+++++..+|+.+...+..
T Consensus 84 ~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~~ 163 (256)
T COG2519 84 GYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEED 163 (256)
T ss_pred HHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccccc
Confidence 45666778899999999999999999999986 3 4699999999 9999999999999999999999999999877789
Q ss_pred eeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccC
Q 014247 179 VDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 179 ~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
||+|+... ++++.++..+...|+|||.+++-.
T Consensus 164 vDav~LDm--------p~PW~~le~~~~~Lkpgg~~~~y~ 195 (256)
T COG2519 164 VDAVFLDL--------PDPWNVLEHVSDALKPGGVVVVYS 195 (256)
T ss_pred cCEEEEcC--------CChHHHHHHHHHHhCCCcEEEEEc
Confidence 99999754 569999999999999999988643
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.8e-11 Score=111.73 Aligned_cols=142 Identities=23% Similarity=0.231 Sum_probs=101.9
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc
Q 014247 97 TETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE 174 (428)
Q Consensus 97 ~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~ 174 (428)
...+.+.+...+. ..+.+|||+|||+|.++..+++. +..+|+|+|++ .+++.|++++..+++. ++.++++|+.+..
T Consensus 73 ~~~l~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~ 150 (251)
T TIGR03534 73 TEELVEAALERLK-KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLD-NVTFLQSDWFEPL 150 (251)
T ss_pred hHHHHHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhccC
Confidence 3444445555443 34569999999999999999986 34499999999 9999999999988886 5999999987643
Q ss_pred CCCceeEEEEecchhhh-----------cc------------hhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccc
Q 014247 175 IDEEVDVIISEWMGYML-----------LY------------ESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDR 231 (428)
Q Consensus 175 ~~~~~DlVvs~~~~~~l-----------~~------------~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~ 231 (428)
..++||+|++++..... .+ ......+++.+.++|+|||.+++...
T Consensus 151 ~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~------------ 218 (251)
T TIGR03534 151 PGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG------------ 218 (251)
T ss_pred cCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC------------
Confidence 34789999997531110 00 11234678899999999999886321
Q ss_pred hhhhhhhhhccCCCCcchhHHHHHhcCCCCceE
Q 014247 232 YSESIDFWRNVYGIDMSAMMPLAKQCAFEEPSV 264 (428)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~ 264 (428)
| .....+.++++++||..+.+
T Consensus 219 -------~-----~~~~~~~~~l~~~gf~~v~~ 239 (251)
T TIGR03534 219 -------Y-----DQGEAVRALFEAAGFADVET 239 (251)
T ss_pred -------c-----cHHHHHHHHHHhCCCCceEE
Confidence 0 12345777788899976543
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=9.1e-12 Score=106.87 Aligned_cols=107 Identities=18% Similarity=0.288 Sum_probs=85.1
Q ss_pred CEEEEEcCCCcHHHHHHHHcCCCe-EEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC-CCceeEEEEecc-hh
Q 014247 114 KVVVDVGCGTGILSIFCAQAGAKR-VYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI-DEEVDVIISEWM-GY 189 (428)
Q Consensus 114 ~~VLDiGcGtG~ls~~la~~g~~~-V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~-~~~~DlVvs~~~-~~ 189 (428)
.+|||+|||+|.+...|++.|+.. .+|+|.| ..++.|+.+++++++.+.|+|.+.|+.+-.. +++||+|+-... ..
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DA 148 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDA 148 (227)
T ss_pred cceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceee
Confidence 399999999999999999998654 9999999 9999999999999999999999999988433 478888876331 10
Q ss_pred -hhc---chhhHHHHHHHHhcccccCeEEEccCCe
Q 014247 190 -MLL---YESMLGSVITARDRWLKRGGLILPSYAT 220 (428)
Q Consensus 190 -~l~---~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 220 (428)
.|. ....+...+..+.++|+|||++++..++
T Consensus 149 isLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN 183 (227)
T KOG1271|consen 149 ISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCN 183 (227)
T ss_pred eecCCCCcccceeeehhhHhhccCCCcEEEEEecC
Confidence 111 1122456678889999999999987654
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=3e-11 Score=116.70 Aligned_cols=105 Identities=22% Similarity=0.291 Sum_probs=83.5
Q ss_pred CCEEEEEcCCCcHHHHHHHHcC-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEEecchh-
Q 014247 113 GKVVVDVGCGTGILSIFCAQAG-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWMGY- 189 (428)
Q Consensus 113 ~~~VLDiGcGtG~ls~~la~~g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~~~~~- 189 (428)
..+|||+|||+|.++..+++.. ..+|+|+|+| .+++.|+++++.+++.++++++++|+.+...+++||+|++++.-.
T Consensus 134 ~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~ 213 (307)
T PRK11805 134 VTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVD 213 (307)
T ss_pred CCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCC
Confidence 3689999999999999999863 4589999999 999999999999998878999999986533236899999975210
Q ss_pred ---------hhcch------------hhHHHHHHHHhcccccCeEEEcc
Q 014247 190 ---------MLLYE------------SMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 190 ---------~l~~~------------~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
.+.++ .....+++.+.++|+|||.+++.
T Consensus 214 ~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E 262 (307)
T PRK11805 214 AEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE 262 (307)
T ss_pred ccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 01111 22467889999999999999864
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.6e-11 Score=108.25 Aligned_cols=112 Identities=18% Similarity=0.285 Sum_probs=87.0
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccc-c-
Q 014247 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDV-E- 174 (428)
Q Consensus 99 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l-~- 174 (428)
.....+...+...++.+|||+|||+|.++..+++. +..+|+++|++ .+++.++++++.+++. +++++.+|+.+. +
T Consensus 27 ~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~-~v~~~~~d~~~~~~~ 105 (196)
T PRK07402 27 EVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVK-NVEVIEGSAPECLAQ 105 (196)
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-CeEEEECchHHHHhh
Confidence 34445566666678899999999999999999875 34599999999 9999999999888875 599999998652 2
Q ss_pred CCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccC
Q 014247 175 IDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 175 ~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
....+|.|+... ...+..+++.+.++|+|||.+++..
T Consensus 106 ~~~~~d~v~~~~-------~~~~~~~l~~~~~~LkpgG~li~~~ 142 (196)
T PRK07402 106 LAPAPDRVCIEG-------GRPIKEILQAVWQYLKPGGRLVATA 142 (196)
T ss_pred CCCCCCEEEEEC-------CcCHHHHHHHHHHhcCCCeEEEEEe
Confidence 124567776532 1246788999999999999998653
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.9e-11 Score=118.34 Aligned_cols=111 Identities=25% Similarity=0.240 Sum_probs=85.2
Q ss_pred HHHhccCCCCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCcee
Q 014247 103 AIMQNQSFIEGKVVVDVGCGTGILSIFCAQAG-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVD 180 (428)
Q Consensus 103 ~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~D 180 (428)
.+...+......+|||+|||+|.++..+++.+ ..+|+++|++ .+++.|+++++.+++. .+++.+|+.+. .+++||
T Consensus 187 lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~--~~~~~~D~~~~-~~~~fD 263 (342)
T PRK09489 187 LLLSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLE--GEVFASNVFSD-IKGRFD 263 (342)
T ss_pred HHHHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC--CEEEEcccccc-cCCCcc
Confidence 33444433345589999999999999999874 3489999999 9999999999999875 46777786553 357899
Q ss_pred EEEEecchhhhc--chhhHHHHHHHHhcccccCeEEEc
Q 014247 181 VIISEWMGYMLL--YESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 181 lVvs~~~~~~l~--~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
+|+|++..+... .......+++.+.+.|+|||.+++
T Consensus 264 lIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~i 301 (342)
T PRK09489 264 MIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRI 301 (342)
T ss_pred EEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEE
Confidence 999987432211 124478899999999999999875
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.7e-11 Score=110.80 Aligned_cols=112 Identities=20% Similarity=0.114 Sum_probs=82.4
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCC--------------CCcE
Q 014247 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNL--------------TDKV 163 (428)
Q Consensus 99 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~--------------~~~v 163 (428)
.+.+.+... ...++.+|||+|||.|..+..+|++|. +|+|+|+| ..++.+.+. +++ ..+|
T Consensus 22 ~l~~~~~~l-~~~~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~~~---~~~~~~~~~~~~~~~~~~~~v 96 (213)
T TIGR03840 22 LLVKHWPAL-GLPAGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFFAE---NGLTPTVTQQGEFTRYRAGNI 96 (213)
T ss_pred HHHHHHHhh-CCCCCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHHHH---cCCCcceeccccceeeecCce
Confidence 444444332 224667999999999999999999999 89999999 777765332 221 2358
Q ss_pred EEEEcccccccCC--CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 164 IVLHGRVEDVEID--EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 164 ~~~~~d~~~l~~~--~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
+++++|+.+++.. ++||.|+.......+ .......+++.+.++|+|||++++
T Consensus 97 ~~~~~D~~~~~~~~~~~fD~i~D~~~~~~l-~~~~R~~~~~~l~~lLkpgG~~ll 150 (213)
T TIGR03840 97 EIFCGDFFALTAADLGPVDAVYDRAALIAL-PEEMRQRYAAHLLALLPPGARQLL 150 (213)
T ss_pred EEEEccCCCCCcccCCCcCEEEechhhccC-CHHHHHHHHHHHHHHcCCCCeEEE
Confidence 9999999887642 679999975422222 345578899999999999997664
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.29 E-value=9.1e-12 Score=117.88 Aligned_cols=108 Identities=17% Similarity=0.193 Sum_probs=80.5
Q ss_pred CCCCEEEEEcCCCcH----HHHHHHHcC------CCeEEEEeCh-HHHHHHHHHHHH----C------------------
Q 014247 111 IEGKVVVDVGCGTGI----LSIFCAQAG------AKRVYAVDAS-DIAVQANEVVKA----N------------------ 157 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~----ls~~la~~g------~~~V~giD~s-~~~~~a~~~~~~----~------------------ 157 (428)
.++.+|||+|||+|. +++.+++.+ ..+|+|+|+| .|++.|++.+-. .
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 355799999999996 566666642 1389999999 999999874310 0
Q ss_pred ----CCCCcEEEEEcccccccC-CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCC
Q 014247 158 ----NLTDKVIVLHGRVEDVEI-DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYA 219 (428)
Q Consensus 158 ----~~~~~v~~~~~d~~~l~~-~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 219 (428)
.+.++|+|.+.|+.+.+. .++||+|+|..+...+ .......+++++.+.|+|||.+++...
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf-~~~~~~~~l~~l~~~L~pGG~L~lg~~ 243 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYF-DEPTQRKLLNRFAEALKPGGYLFLGHS 243 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhC-CHHHHHHHHHHHHHHhCCCeEEEEECc
Confidence 122468999999998766 4899999997632222 224567899999999999999997654
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.9e-11 Score=113.39 Aligned_cols=114 Identities=23% Similarity=0.278 Sum_probs=88.6
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCc
Q 014247 101 RAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAG-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEE 178 (428)
Q Consensus 101 ~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~ 178 (428)
.+.+.+.+....+.+|||+|||.|.++..+++.. ..+++-+|.| ..++.|++++..|++++. .++..|..+-. .++
T Consensus 147 S~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~-~v~~s~~~~~v-~~k 224 (300)
T COG2813 147 SRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENT-EVWASNLYEPV-EGK 224 (300)
T ss_pred HHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCcc-EEEEecccccc-ccc
Confidence 3456666665666699999999999999999984 5699999999 899999999999999764 67777765432 259
Q ss_pred eeEEEEecchhhhcchh--hHHHHHHHHhcccccCeEEEc
Q 014247 179 VDVIISEWMGYMLLYES--MLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 179 ~DlVvs~~~~~~l~~~~--~~~~~l~~~~~~LkpgG~lv~ 216 (428)
||+|+|++..+.-.... .-++++....+.|++||.|.+
T Consensus 225 fd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~i 264 (300)
T COG2813 225 FDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWI 264 (300)
T ss_pred ccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEE
Confidence 99999998543222211 145889999999999998764
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.7e-11 Score=110.91 Aligned_cols=106 Identities=18% Similarity=0.263 Sum_probs=82.5
Q ss_pred CCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc---CC-CceeEEEEe
Q 014247 112 EGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE---ID-EEVDVIISE 185 (428)
Q Consensus 112 ~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~---~~-~~~DlVvs~ 185 (428)
...+|||||||+|.++..+++. ...+|+|+|++ .+++.|++++...++. +++++++|+.++. ++ +.+|.|+++
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~~~~~~~~~~~~~~d~v~~~ 94 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCGDANELLDKFFPDGSLSKVFLN 94 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence 4569999999999999999987 34589999999 9999999999888886 6999999998753 23 589999986
Q ss_pred cchhhhc--c---hhhHHHHHHHHhcccccCeEEEccC
Q 014247 186 WMGYMLL--Y---ESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 186 ~~~~~l~--~---~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
....... + ....+.+++.+.++|||||.+++.+
T Consensus 95 ~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~t 132 (194)
T TIGR00091 95 FPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKT 132 (194)
T ss_pred CCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEe
Confidence 4211100 0 0112678999999999999998643
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.6e-11 Score=115.32 Aligned_cols=122 Identities=23% Similarity=0.299 Sum_probs=90.4
Q ss_pred hHHHHHHHHHhcc-CCCCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccc
Q 014247 96 RTETYRAAIMQNQ-SFIEGKVVVDVGCGTGILSIFCAQAG-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVED 172 (428)
Q Consensus 96 r~~~~~~~i~~~~-~~~~~~~VLDiGcGtG~ls~~la~~g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 172 (428)
.++.+.+.+...+ ...+..+|||+|||+|.++..++... ..+|+|+|+| .++..|++++..+++.++++++++|+.+
T Consensus 97 ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~ 176 (284)
T TIGR00536 97 ETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE 176 (284)
T ss_pred ccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc
Confidence 3445555444332 22233699999999999999999873 2489999999 9999999999999987779999999876
Q ss_pred ccCCCceeEEEEecch----------hhhcch------------hhHHHHHHHHhcccccCeEEEcc
Q 014247 173 VEIDEEVDVIISEWMG----------YMLLYE------------SMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 173 l~~~~~~DlVvs~~~~----------~~l~~~------------~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
.....+||+|++++.- ....++ .....++..+.++|+|||.+++.
T Consensus 177 ~~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e 243 (284)
T TIGR00536 177 PLAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCE 243 (284)
T ss_pred cCcCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 3222489999997520 011111 24677889999999999999864
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.5e-12 Score=113.32 Aligned_cols=175 Identities=22% Similarity=0.271 Sum_probs=115.0
Q ss_pred chhhHHHhhhccchhhhhhccChhh---HHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHH
Q 014247 72 DFDVAYFHSYAHVGIHEEMIKDRVR---TETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIA 147 (428)
Q Consensus 72 ~~~~~~f~~y~~~~~~~~~~~d~~r---~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~ 147 (428)
-+-...|+.|++. .+.++-++.. ...+.+.|.+ ....+-.++||+|||||..+..+-.. +++++|+|+| +|+
T Consensus 85 aYVe~LFD~~Ae~--Fd~~LVdkL~Y~vP~~l~emI~~-~~~g~F~~~lDLGCGTGL~G~~lR~~-a~~ltGvDiS~nMl 160 (287)
T COG4976 85 AYVETLFDQYAER--FDHILVDKLGYSVPELLAEMIGK-ADLGPFRRMLDLGCGTGLTGEALRDM-ADRLTGVDISENML 160 (287)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHhcCccHHHHHHHHHh-ccCCccceeeecccCcCcccHhHHHH-HhhccCCchhHHHH
Confidence 3455778888864 3334433322 2334444443 33344579999999999999988776 7799999999 999
Q ss_pred HHHHHHHHHCCCCCcEEEEEcccccc---cCCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEe
Q 014247 148 VQANEVVKANNLTDKVIVLHGRVEDV---EIDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMA 224 (428)
Q Consensus 148 ~~a~~~~~~~~~~~~v~~~~~d~~~l---~~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~ 224 (428)
+.|.++ ++-+ ++.++++..+ ..+++||+|++.- ++.+...++.++..+..+|+|||.+.++.-+.-..
T Consensus 161 ~kA~eK----g~YD--~L~~Aea~~Fl~~~~~er~DLi~AaD---Vl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~ 231 (287)
T COG4976 161 AKAHEK----GLYD--TLYVAEAVLFLEDLTQERFDLIVAAD---VLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDD 231 (287)
T ss_pred HHHHhc----cchH--HHHHHHHHHHhhhccCCcccchhhhh---HHHhhcchhhHHHHHHHhcCCCceEEEEecccCCC
Confidence 888664 3322 3344444432 2248999999844 77788889999999999999999999875443211
Q ss_pred ecCCccchhhhhhhhhccCCCCcchhHHHHHhcCCCCceEEee
Q 014247 225 PVTHPDRYSESIDFWRNVYGIDMSAMMPLAKQCAFEEPSVETI 267 (428)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~ 267 (428)
. .-.... ...|.-..+.+...+...||+.+.++..
T Consensus 232 ~---~f~l~p-----s~RyAH~~~YVr~~l~~~Gl~~i~~~~t 266 (287)
T COG4976 232 G---GFVLGP-----SQRYAHSESYVRALLAASGLEVIAIEDT 266 (287)
T ss_pred C---Ceecch-----hhhhccchHHHHHHHHhcCceEEEeecc
Confidence 0 000000 0112334556788889999998776644
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.1e-11 Score=106.99 Aligned_cols=106 Identities=23% Similarity=0.253 Sum_probs=85.6
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccc-ccCCC
Q 014247 100 YRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVED-VEIDE 177 (428)
Q Consensus 100 ~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~-l~~~~ 177 (428)
....+.+.+...++.+|||||||+|..+..+|+. +.+|+++|.. ++++.|+++++..|+.+ |.++++|... ++...
T Consensus 60 ~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l-~~~V~siEr~~~L~~~A~~~L~~lg~~n-V~v~~gDG~~G~~~~a 137 (209)
T COG2518 60 MVARMLQLLELKPGDRVLEIGTGSGYQAAVLARL-VGRVVSIERIEELAEQARRNLETLGYEN-VTVRHGDGSKGWPEEA 137 (209)
T ss_pred HHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHH-hCeEEEEEEcHHHHHHHHHHHHHcCCCc-eEEEECCcccCCCCCC
Confidence 3445666777899999999999999999999998 4499999999 99999999999999987 9999999765 45458
Q ss_pred ceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 178 EVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 178 ~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
+||.|+... .... .++. +.+.|++||++++
T Consensus 138 PyD~I~Vta---aa~~--vP~~----Ll~QL~~gGrlv~ 167 (209)
T COG2518 138 PYDRIIVTA---AAPE--VPEA----LLDQLKPGGRLVI 167 (209)
T ss_pred CcCEEEEee---ccCC--CCHH----HHHhcccCCEEEE
Confidence 999999854 2221 1333 3456999999985
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.6e-11 Score=109.67 Aligned_cols=107 Identities=22% Similarity=0.258 Sum_probs=83.9
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC-CC
Q 014247 100 YRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI-DE 177 (428)
Q Consensus 100 ~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~-~~ 177 (428)
....+...+...++.+|||+|||+|.++..+++.+ .+|+++|.+ .++..|++++...++.+ ++++.+|..+... .+
T Consensus 66 ~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~ 143 (212)
T PRK00312 66 MVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQLGLHN-VSVRHGDGWKGWPAYA 143 (212)
T ss_pred HHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHCCCCc-eEEEECCcccCCCcCC
Confidence 34455556666788999999999999999888874 489999999 99999999999888865 9999999765322 37
Q ss_pred ceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 178 EVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 178 ~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
+||+|++.. .. ..+.+.+.+.|+|||++++.
T Consensus 144 ~fD~I~~~~---~~------~~~~~~l~~~L~~gG~lv~~ 174 (212)
T PRK00312 144 PFDRILVTA---AA------PEIPRALLEQLKEGGILVAP 174 (212)
T ss_pred CcCEEEEcc---Cc------hhhhHHHHHhcCCCcEEEEE
Confidence 899999854 22 22234567899999998853
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.5e-11 Score=124.93 Aligned_cols=113 Identities=25% Similarity=0.389 Sum_probs=86.3
Q ss_pred HHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccc--ccCC-C
Q 014247 102 AAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVED--VEID-E 177 (428)
Q Consensus 102 ~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~--l~~~-~ 177 (428)
..+.+.+...++.+|||||||+|.++..+++.+ .+|+|+|++ .+++.+++. ++...+++++++|+.+ ++++ +
T Consensus 27 ~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~~-~~v~giD~s~~~l~~a~~~---~~~~~~i~~~~~d~~~~~~~~~~~ 102 (475)
T PLN02336 27 PEILSLLPPYEGKSVLELGAGIGRFTGELAKKA-GQVIALDFIESVIKKNESI---NGHYKNVKFMCADVTSPDLNISDG 102 (475)
T ss_pred hHHHhhcCccCCCEEEEeCCCcCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHH---hccCCceEEEEecccccccCCCCC
Confidence 445555555677899999999999999999984 599999999 998876543 2333469999999864 4444 7
Q ss_pred ceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCC
Q 014247 178 EVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYA 219 (428)
Q Consensus 178 ~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 219 (428)
+||+|++..+.+.+. ...+..+++++.++|||||.+++...
T Consensus 103 ~fD~I~~~~~l~~l~-~~~~~~~l~~~~r~Lk~gG~l~~~d~ 143 (475)
T PLN02336 103 SVDLIFSNWLLMYLS-DKEVENLAERMVKWLKVGGYIFFRES 143 (475)
T ss_pred CEEEEehhhhHHhCC-HHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 899999977333332 23378999999999999999987653
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=8.9e-11 Score=110.74 Aligned_cols=112 Identities=21% Similarity=0.264 Sum_probs=80.9
Q ss_pred HHHHHHHHhc---cCCCCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccc
Q 014247 98 ETYRAAIMQN---QSFIEGKVVVDVGCGTGILSIFCAQA-G-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVE 171 (428)
Q Consensus 98 ~~~~~~i~~~---~~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~ 171 (428)
..+..+|..- +...++.+|||+|||+|.++..+++. + ..+|+++|++ .+.+...+.+... .+|.++.+|+.
T Consensus 115 SKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r---~NI~~I~~Da~ 191 (293)
T PTZ00146 115 SKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR---PNIVPIIEDAR 191 (293)
T ss_pred cHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCCEEEECCcc
Confidence 4556666443 34678899999999999999999997 3 3589999999 7665554444322 35888999986
Q ss_pred ccc----CCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 172 DVE----IDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 172 ~l~----~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
... +.+.||+|++.. . .......++.++.++|||||.+++.
T Consensus 192 ~p~~y~~~~~~vDvV~~Dv---a--~pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 192 YPQKYRMLVPMVDVIFADV---A--QPDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred ChhhhhcccCCCCEEEEeC---C--CcchHHHHHHHHHHhccCCCEEEEE
Confidence 421 226899999875 1 1223556677889999999999873
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.5e-11 Score=122.40 Aligned_cols=132 Identities=20% Similarity=0.232 Sum_probs=96.2
Q ss_pred hhhhhccChhhHHHHHHHHHhccC------------------------CCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEE
Q 014247 86 IHEEMIKDRVRTETYRAAIMQNQS------------------------FIEGKVVVDVGCGTGILSIFCAQA-GAKRVYA 140 (428)
Q Consensus 86 ~~~~~~~d~~r~~~~~~~i~~~~~------------------------~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~g 140 (428)
.....+-.+..++.+.+.+...+. ..++.+|||+|||+|.++..+++. +..+|+|
T Consensus 88 V~~~VLIPRpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~GsG~iai~la~~~p~~~v~a 167 (506)
T PRK01544 88 VNKHVLIPRSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILELGTGSGCIAISLLCELPNANVIA 167 (506)
T ss_pred eCCCcccCCCcHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEEccCchhHHHHHHHHHCCCCeEEE
Confidence 334455556667777776654321 113468999999999999988875 4459999
Q ss_pred EeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEEecchh-----------hhcch------------hh
Q 014247 141 VDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWMGY-----------MLLYE------------SM 196 (428)
Q Consensus 141 iD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~~~~~-----------~l~~~------------~~ 196 (428)
+|+| .+++.|++++..+++.+++.++++|+.+....++||+|+|++.-. ...++ ..
T Consensus 168 vDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~ 247 (506)
T PRK01544 168 TDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQA 247 (506)
T ss_pred EECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHH
Confidence 9999 999999999999998888999999976532246899999976210 01111 12
Q ss_pred HHHHHHHHhcccccCeEEEcc
Q 014247 197 LGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 197 ~~~~l~~~~~~LkpgG~lv~~ 217 (428)
...+++.+.++|+|||.+++.
T Consensus 248 ~~~il~~a~~~L~~gG~l~lE 268 (506)
T PRK01544 248 YFIIAENAKQFLKPNGKIILE 268 (506)
T ss_pred HHHHHHHHHHhccCCCEEEEE
Confidence 456778888999999998864
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.8e-11 Score=129.50 Aligned_cols=108 Identities=22% Similarity=0.208 Sum_probs=89.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCC-CcEEEEEccccccc--CCCceeEEEEec
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLT-DKVIVLHGRVEDVE--IDEEVDVIISEW 186 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~-~~v~~~~~d~~~l~--~~~~~DlVvs~~ 186 (428)
.++++|||+|||+|.+++.+++.|+++|+++|+| .+++.|++++..|++. ++++++++|+.++. ..++||+|++++
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 3578999999999999999999988899999999 9999999999999996 67999999987642 246899999987
Q ss_pred chhh--------hcchhhHHHHHHHHhcccccCeEEEccC
Q 014247 187 MGYM--------LLYESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 187 ~~~~--------l~~~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
..+. .....+...++..+.++|+|||.++++.
T Consensus 617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~ 656 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSN 656 (702)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 4211 1123356778888899999999998653
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.7e-11 Score=118.90 Aligned_cols=109 Identities=22% Similarity=0.211 Sum_probs=87.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCC-CcEEEEEccccccc-----CCCceeEEE
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLT-DKVIVLHGRVEDVE-----IDEEVDVII 183 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~-~~v~~~~~d~~~l~-----~~~~~DlVv 183 (428)
.++++|||+|||+|.+++.++..|+.+|+++|+| .+++.|++++..|++. ++++++++|+.++. ..++||+|+
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 4678999999999999998887788899999999 9999999999999986 47999999987752 135899999
Q ss_pred Eecchhhhcc------hhhHHHHHHHHhcccccCeEEEccCC
Q 014247 184 SEWMGYMLLY------ESMLGSVITARDRWLKRGGLILPSYA 219 (428)
Q Consensus 184 s~~~~~~l~~------~~~~~~~l~~~~~~LkpgG~lv~~~~ 219 (428)
+++..+.-.. ......++....++|+|||.++.+++
T Consensus 299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 9874321111 12355666778899999999997554
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.9e-11 Score=110.85 Aligned_cols=104 Identities=17% Similarity=0.172 Sum_probs=85.8
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHc--CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc-------CCCce
Q 014247 110 FIEGKVVVDVGCGTGILSIFCAQA--GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE-------IDEEV 179 (428)
Q Consensus 110 ~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~-------~~~~~ 179 (428)
..++++|||+|||+|..++.+++. +..+|+++|.+ ++++.|+++++.+++.++++++.+|+.+.- ..++|
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~f 145 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEF 145 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence 356789999999999988888775 35699999999 999999999999999999999999987641 13689
Q ss_pred eEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCC
Q 014247 180 DVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYA 219 (428)
Q Consensus 180 DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 219 (428)
|+|+.+. .......++..+.++|+|||++++...
T Consensus 146 D~VfiDa------~k~~y~~~~~~~~~ll~~GG~ii~dn~ 179 (234)
T PLN02781 146 DFAFVDA------DKPNYVHFHEQLLKLVKVGGIIAFDNT 179 (234)
T ss_pred CEEEECC------CHHHHHHHHHHHHHhcCCCeEEEEEcC
Confidence 9999754 123456778888999999999987654
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.25 E-value=9e-11 Score=113.41 Aligned_cols=118 Identities=16% Similarity=0.102 Sum_probs=83.4
Q ss_pred HHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcC--CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccc-c
Q 014247 98 ETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAG--AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVED-V 173 (428)
Q Consensus 98 ~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g--~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~-l 173 (428)
+.+.+.|...+ .++.+|||+|||+|..+..++++. ..+|+++|+| +|++.|++++......-++.++++|+.+ +
T Consensus 51 ~~~~~~ia~~~--~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~ 128 (301)
T TIGR03438 51 ERHADEIAAAT--GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPL 128 (301)
T ss_pred HHHHHHHHHhh--CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchh
Confidence 34444555444 466899999999999999998874 3489999999 9999998887654323357889999986 3
Q ss_pred cCCCce---eEEEEecchhhhc--chhhHHHHHHHHhcccccCeEEEccC
Q 014247 174 EIDEEV---DVIISEWMGYMLL--YESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 174 ~~~~~~---DlVvs~~~~~~l~--~~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
+....+ +.+++. ++..+. ...+...+++++.+.|+|||.+++..
T Consensus 129 ~~~~~~~~~~~~~~~-~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 129 ALPPEPAAGRRLGFF-PGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred hhhcccccCCeEEEE-ecccccCCCHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 443333 333321 222222 34557789999999999999998754
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.24 E-value=9.9e-11 Score=107.47 Aligned_cols=100 Identities=21% Similarity=0.204 Sum_probs=78.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCC--------------CCcEEEEEcccccccC
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNL--------------TDKVIVLHGRVEDVEI 175 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~--------------~~~v~~~~~d~~~l~~ 175 (428)
.++.+|||+|||.|..+..+|+.|. +|+|||+| ..++.+.+ ++++ ..+|++.++|+.++..
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~ 111 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTA 111 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEECcccCCCc
Confidence 4668999999999999999999998 89999999 77776532 2322 2468999999998754
Q ss_pred C--CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEE
Q 014247 176 D--EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLIL 215 (428)
Q Consensus 176 ~--~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv 215 (428)
. ..||+|+...+...+ .......+++.+.++|+|||+++
T Consensus 112 ~~~~~fd~v~D~~~~~~l-~~~~R~~~~~~l~~lL~pgG~~~ 152 (218)
T PRK13255 112 ADLADVDAVYDRAALIAL-PEEMRERYVQQLAALLPAGCRGL 152 (218)
T ss_pred ccCCCeeEEEehHhHhhC-CHHHHHHHHHHHHHHcCCCCeEE
Confidence 3 689999986533333 34557899999999999999644
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.22 E-value=9.7e-11 Score=105.96 Aligned_cols=147 Identities=17% Similarity=0.230 Sum_probs=95.2
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccc-cc-C-CCceeEEEEec
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVED-VE-I-DEEVDVIISEW 186 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~-l~-~-~~~~DlVvs~~ 186 (428)
.++.+|||||||+|.++..+++.+...++|+|++ +++..+++. +++++++|+.+ ++ . +++||+|++..
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~--------~~~~~~~d~~~~l~~~~~~sfD~Vi~~~ 83 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR--------GVNVIQGDLDEGLEAFPDKSFDYVILSQ 83 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc--------CCeEEEEEhhhcccccCCCCcCEEEEhh
Confidence 4678999999999999998887644478999999 888776531 36888889876 32 3 37899999865
Q ss_pred chhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEe-e-cCCccc-hhh-hhhhhh---ccCCCCcchhHHHHHhcCC
Q 014247 187 MGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMA-P-VTHPDR-YSE-SIDFWR---NVYGIDMSAMMPLAKQCAF 259 (428)
Q Consensus 187 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~-~-~~~~~~-~~~-~~~~~~---~~~~~~~~~l~~~l~~~Gf 259 (428)
.+++..++..+++++.+.++++...++........ . ...... ... ....|. ....+..+.+.++++++||
T Consensus 84 ---~l~~~~d~~~~l~e~~r~~~~~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~Gf 160 (194)
T TIGR02081 84 ---TLQATRNPEEILDEMLRVGRHAIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELNL 160 (194)
T ss_pred ---HhHcCcCHHHHHHHHHHhCCeEEEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCCC
Confidence 66777788999999888776543333321111000 0 000000 000 000111 1234567889999999999
Q ss_pred CCceEEeec
Q 014247 260 EEPSVETIT 268 (428)
Q Consensus 260 ~~~~~~~~~ 268 (428)
+........
T Consensus 161 ~v~~~~~~~ 169 (194)
T TIGR02081 161 RILDRAAFD 169 (194)
T ss_pred EEEEEEEec
Confidence 987766554
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.1e-10 Score=106.17 Aligned_cols=97 Identities=14% Similarity=0.193 Sum_probs=73.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC-CCceeEEEEecc
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI-DEEVDVIISEWM 187 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~-~~~~DlVvs~~~ 187 (428)
.++.+|||||||+|.++..+++. +..+|+|+|+| .+++.|+++. .++.++++|+.+ +. +++||+|++..+
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~------~~~~~~~~d~~~-~~~~~sfD~V~~~~v 114 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL------PNINIIQGSLFD-PFKDNFFDLVLTKGV 114 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC------CCCcEEEeeccC-CCCCCCEEEEEECCh
Confidence 46779999999999999999886 45589999999 9999987753 136788899887 44 479999999763
Q ss_pred hhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 188 GYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 188 ~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
.+.+ ...++..+++++.+++ ++.+++.
T Consensus 115 L~hl-~p~~~~~~l~el~r~~--~~~v~i~ 141 (204)
T TIGR03587 115 LIHI-NPDNLPTAYRELYRCS--NRYILIA 141 (204)
T ss_pred hhhC-CHHHHHHHHHHHHhhc--CcEEEEE
Confidence 3222 2345788889998887 4455553
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.1e-10 Score=114.55 Aligned_cols=106 Identities=16% Similarity=0.266 Sum_probs=85.2
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc--C-CCceeEEE
Q 014247 109 SFIEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE--I-DEEVDVII 183 (428)
Q Consensus 109 ~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~--~-~~~~DlVv 183 (428)
....+..+||||||+|.++..+|+. +...++|+|++ +++..|.+++..+++.+ +.++++|+..+. + ++++|.|+
T Consensus 119 ~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~N-V~~i~~DA~~ll~~~~~~s~D~I~ 197 (390)
T PRK14121 119 SKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKN-LLIINYDARLLLELLPSNSVEKIF 197 (390)
T ss_pred cCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCc-EEEEECCHHHhhhhCCCCceeEEE
Confidence 3355679999999999999999987 34589999999 99999999999999875 999999987642 2 38999999
Q ss_pred Eecchhhhcchh------hHHHHHHHHhcccccCeEEEccC
Q 014247 184 SEWMGYMLLYES------MLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 184 s~~~~~~l~~~~------~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
+.. -..|.. ..+.++.++.++|+|||.+.+.+
T Consensus 198 lnF---PdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 198 VHF---PVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRT 235 (390)
T ss_pred EeC---CCCccccchhhccHHHHHHHHHHHcCCCcEEEEEE
Confidence 854 222211 13689999999999999998754
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.8e-10 Score=110.01 Aligned_cols=123 Identities=25% Similarity=0.246 Sum_probs=91.6
Q ss_pred ChhhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccc
Q 014247 93 DRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAG-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRV 170 (428)
Q Consensus 93 d~~r~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~ 170 (428)
....++.+.+.+.......++.+|||+|||+|.++..+++.. ..+|+|+|++ .+++.|++++. .....++.++.+|+
T Consensus 89 pr~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~ 167 (275)
T PRK09328 89 PRPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDW 167 (275)
T ss_pred CCCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEccc
Confidence 344456667766655555677899999999999999999873 4589999999 99999999887 34445799999998
Q ss_pred ccccCCCceeEEEEecchhh-----------h------------cchhhHHHHHHHHhcccccCeEEEc
Q 014247 171 EDVEIDEEVDVIISEWMGYM-----------L------------LYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 171 ~~l~~~~~~DlVvs~~~~~~-----------l------------~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
.+....++||+|++++.... . ........+++.+.++|+|||.+++
T Consensus 168 ~~~~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~ 236 (275)
T PRK09328 168 FEPLPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLL 236 (275)
T ss_pred cCcCCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEE
Confidence 65333478999999752100 0 0112346778888899999999986
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=2e-10 Score=103.73 Aligned_cols=104 Identities=15% Similarity=0.125 Sum_probs=80.2
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc--CCCceeEEEEecc
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE--IDEEVDVIISEWM 187 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~--~~~~~DlVvs~~~ 187 (428)
.++.+|||+|||+|.+++.++..++.+|+++|.+ ..++.++++++.+++. +++++++|+.+.. ..++||+|++++.
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~-~v~~~~~D~~~~l~~~~~~fDlV~~DPP 130 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAG-NARVVNTNALSFLAQPGTPHNVVFVDPP 130 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEEchHHHHHhhcCCCceEEEECCC
Confidence 4678999999999999997666677899999999 9999999999998875 5999999987632 1257999999984
Q ss_pred hhhhcchhhHHHHHHHHh--cccccCeEEEccCC
Q 014247 188 GYMLLYESMLGSVITARD--RWLKRGGLILPSYA 219 (428)
Q Consensus 188 ~~~l~~~~~~~~~l~~~~--~~LkpgG~lv~~~~ 219 (428)
. .......+++.+. .+|+|+++++++..
T Consensus 131 y----~~g~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 131 F----RKGLLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred C----CCChHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 1 1222444555554 45899998887643
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.7e-10 Score=117.54 Aligned_cols=115 Identities=18% Similarity=0.220 Sum_probs=89.6
Q ss_pred hccCCCCCCEEEEEcCCCcHHHHHHHHc--CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEE
Q 014247 106 QNQSFIEGKVVVDVGCGTGILSIFCAQA--GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVI 182 (428)
Q Consensus 106 ~~~~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlV 182 (428)
..+...++.+|||+|||+|..+..+++. +..+|+|+|++ .+++.++++++..|+. +|+++++|+.++...++||+|
T Consensus 244 ~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~-~v~~~~~Da~~~~~~~~fD~V 322 (445)
T PRK14904 244 LLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT-IIETIEGDARSFSPEEQPDAI 322 (445)
T ss_pred HhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC-eEEEEeCcccccccCCCCCEE
Confidence 3445578899999999999999888874 23489999999 9999999999999885 599999999887655789999
Q ss_pred EEecc----hhhhcc--------hh-------hHHHHHHHHhcccccCeEEEccCCee
Q 014247 183 ISEWM----GYMLLY--------ES-------MLGSVITARDRWLKRGGLILPSYATL 221 (428)
Q Consensus 183 vs~~~----~~~l~~--------~~-------~~~~~l~~~~~~LkpgG~lv~~~~~~ 221 (428)
+++.. +.+-.+ .. ....+|..+.++|+|||+++.+++++
T Consensus 323 l~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 323 LLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred EEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 97532 111100 11 13468999999999999999877654
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.3e-10 Score=105.60 Aligned_cols=108 Identities=22% Similarity=0.310 Sum_probs=79.5
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CC-CeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccc-c
Q 014247 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-GA-KRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDV-E 174 (428)
Q Consensus 99 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~-~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l-~ 174 (428)
.....+.+.+...+|.+|||||||+|.++..+++. |. .+|+++|.. .+++.|++++...+.. +|.++++|...- +
T Consensus 59 ~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~-nv~~~~gdg~~g~~ 137 (209)
T PF01135_consen 59 SMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGID-NVEVVVGDGSEGWP 137 (209)
T ss_dssp HHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTH-SEEEEES-GGGTTG
T ss_pred HHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccC-ceeEEEcchhhccc
Confidence 44556667777899999999999999999999987 43 369999999 9999999999998886 499999997653 3
Q ss_pred CCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 175 IDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 175 ~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
...+||.|++.. ... ..+. .+.+.|++||+|+.
T Consensus 138 ~~apfD~I~v~~---a~~--~ip~----~l~~qL~~gGrLV~ 170 (209)
T PF01135_consen 138 EEAPFDRIIVTA---AVP--EIPE----ALLEQLKPGGRLVA 170 (209)
T ss_dssp GG-SEEEEEESS---BBS--S--H----HHHHTEEEEEEEEE
T ss_pred cCCCcCEEEEee---ccc--hHHH----HHHHhcCCCcEEEE
Confidence 337899999854 232 2123 34566999999984
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.5e-10 Score=99.36 Aligned_cols=92 Identities=32% Similarity=0.350 Sum_probs=75.2
Q ss_pred ccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEEe
Q 014247 107 NQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISE 185 (428)
Q Consensus 107 ~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~ 185 (428)
......|++|+|+|||||.+++.++-.|+.+|+|+|++ ++++.+++++.+ +..++.|+.+|+.+.. .++|.++.|
T Consensus 40 ~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~--l~g~v~f~~~dv~~~~--~~~dtvimN 115 (198)
T COG2263 40 LRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEE--LLGDVEFVVADVSDFR--GKFDTVIMN 115 (198)
T ss_pred HcCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHh--hCCceEEEEcchhhcC--CccceEEEC
Confidence 44567899999999999999999999999999999999 999999999888 4557999999999876 779999998
Q ss_pred c-chhhhcchhhHHHHHHH
Q 014247 186 W-MGYMLLYESMLGSVITA 203 (428)
Q Consensus 186 ~-~~~~l~~~~~~~~~l~~ 203 (428)
+ +|....+ .|.+-+..+
T Consensus 116 PPFG~~~rh-aDr~Fl~~A 133 (198)
T COG2263 116 PPFGSQRRH-ADRPFLLKA 133 (198)
T ss_pred CCCcccccc-CCHHHHHHH
Confidence 7 4444333 444444433
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.6e-10 Score=107.19 Aligned_cols=108 Identities=26% Similarity=0.315 Sum_probs=85.6
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc--CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC--
Q 014247 101 RAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA--GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI-- 175 (428)
Q Consensus 101 ~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~-- 175 (428)
...|...+...+|.+|||.|.|+|.++..+++. ...+|+..|+. +.++.|+++++..++.++|++.+.|+.+..+
T Consensus 29 ~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~ 108 (247)
T PF08704_consen 29 ISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDE 108 (247)
T ss_dssp HHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--ST
T ss_pred HHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccc
Confidence 345667778899999999999999999999986 35699999999 9999999999999999899999999965333
Q ss_pred --CCceeEEEEecchhhhcchhhHHHHHHHHhccc-ccCeEEEc
Q 014247 176 --DEEVDVIISEWMGYMLLYESMLGSVITARDRWL-KRGGLILP 216 (428)
Q Consensus 176 --~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~L-kpgG~lv~ 216 (428)
...+|.|+.++ ++++.++..+.+.| ++||+++.
T Consensus 109 ~~~~~~DavfLDl--------p~Pw~~i~~~~~~L~~~gG~i~~ 144 (247)
T PF08704_consen 109 ELESDFDAVFLDL--------PDPWEAIPHAKRALKKPGGRICC 144 (247)
T ss_dssp T-TTSEEEEEEES--------SSGGGGHHHHHHHE-EEEEEEEE
T ss_pred cccCcccEEEEeC--------CCHHHHHHHHHHHHhcCCceEEE
Confidence 36799999764 34677788888999 89999885
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.5e-10 Score=107.76 Aligned_cols=107 Identities=21% Similarity=0.234 Sum_probs=76.2
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc----CC-CeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccc
Q 014247 100 YRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA----GA-KRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDV 173 (428)
Q Consensus 100 ~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~----g~-~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l 173 (428)
+.+.+...+...++.+|||||||+|.++..+++. |. .+|+|+|++ .|++.|+++...+ ++.+...+...+
T Consensus 48 ~~~~~~~~l~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~----~~~~~~~~~~~l 123 (232)
T PRK06202 48 YRRLLRPALSADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP----GVTFRQAVSDEL 123 (232)
T ss_pred HHHHHHHhcCCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC----CCeEEEEecccc
Confidence 3444443344456789999999999998888753 32 389999999 9999998765433 356666666555
Q ss_pred cC-CCceeEEEEecchhhhcchhh--HHHHHHHHhcccccCeEE
Q 014247 174 EI-DEEVDVIISEWMGYMLLYESM--LGSVITARDRWLKRGGLI 214 (428)
Q Consensus 174 ~~-~~~~DlVvs~~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l 214 (428)
+. +++||+|+++. .++|..+ +..+++++.++++ ++.+
T Consensus 124 ~~~~~~fD~V~~~~---~lhh~~d~~~~~~l~~~~r~~~-~~~~ 163 (232)
T PRK06202 124 VAEGERFDVVTSNH---FLHHLDDAEVVRLLADSAALAR-RLVL 163 (232)
T ss_pred cccCCCccEEEECC---eeecCChHHHHHHHHHHHHhcC-eeEE
Confidence 54 37999999976 4555443 5689999999998 4443
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.6e-10 Score=115.49 Aligned_cols=114 Identities=18% Similarity=0.163 Sum_probs=88.5
Q ss_pred hccCCCCCCEEEEEcCCCcHHHHHHHHcCC-CeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC---CCcee
Q 014247 106 QNQSFIEGKVVVDVGCGTGILSIFCAQAGA-KRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI---DEEVD 180 (428)
Q Consensus 106 ~~~~~~~~~~VLDiGcGtG~ls~~la~~g~-~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~---~~~~D 180 (428)
..+...++.+|||+|||+|..+..+++.+. .+|+++|++ .++..++++++.+++. ++++++|+.++.. .++||
T Consensus 238 ~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~--~~~~~~D~~~~~~~~~~~~fD 315 (427)
T PRK10901 238 TLLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLK--ATVIVGDARDPAQWWDGQPFD 315 (427)
T ss_pred HHcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEcCcccchhhcccCCCC
Confidence 344567899999999999999999998743 599999999 9999999999998874 6899999987532 36799
Q ss_pred EEEEecchhhh------------cchh-------hHHHHHHHHhcccccCeEEEccCCee
Q 014247 181 VIISEWMGYML------------LYES-------MLGSVITARDRWLKRGGLILPSYATL 221 (428)
Q Consensus 181 lVvs~~~~~~l------------~~~~-------~~~~~l~~~~~~LkpgG~lv~~~~~~ 221 (428)
+|+++...+.. .... ....++..+.++|||||.++.+++++
T Consensus 316 ~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 375 (427)
T PRK10901 316 RILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSI 375 (427)
T ss_pred EEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 99976532111 0111 13468999999999999999876654
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.7e-10 Score=108.01 Aligned_cols=114 Identities=15% Similarity=0.033 Sum_probs=88.0
Q ss_pred ccCCCCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC-CceeEE
Q 014247 107 NQSFIEGKVVVDVGCGTGILSIFCAQA-G-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID-EEVDVI 182 (428)
Q Consensus 107 ~~~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~-~~~DlV 182 (428)
.+...++.+|||+|||+|..+..+++. + ...|+++|++ .+++.++++++.+++.+ +.+++.|+..+... ++||+|
T Consensus 66 ~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~-v~~~~~D~~~~~~~~~~fD~V 144 (264)
T TIGR00446 66 ALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLN-VAVTNFDGRVFGAAVPKFDAI 144 (264)
T ss_pred HhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCc-EEEecCCHHHhhhhccCCCEE
Confidence 344578899999999999999998875 2 3489999999 99999999999998864 99999998876433 679999
Q ss_pred EEecchhhh---c---------chh-------hHHHHHHHHhcccccCeEEEccCCee
Q 014247 183 ISEWMGYML---L---------YES-------MLGSVITARDRWLKRGGLILPSYATL 221 (428)
Q Consensus 183 vs~~~~~~l---~---------~~~-------~~~~~l~~~~~~LkpgG~lv~~~~~~ 221 (428)
+++...+.. . ... ....+|..+.++|||||+++.+++++
T Consensus 145 l~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 145 LLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred EEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 986532211 0 011 13458899999999999999766543
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.2e-10 Score=115.86 Aligned_cols=115 Identities=18% Similarity=0.197 Sum_probs=90.5
Q ss_pred hccCCCCCCEEEEEcCCCcHHHHHHHHc--CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc--CCCcee
Q 014247 106 QNQSFIEGKVVVDVGCGTGILSIFCAQA--GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE--IDEEVD 180 (428)
Q Consensus 106 ~~~~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~--~~~~~D 180 (428)
..+...+|.+|||+|||+|..+..+++. +..+|+++|++ .+++.+++++++.++.+ ++++++|+.+++ ..++||
T Consensus 231 ~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~-v~~~~~Da~~l~~~~~~~fD 309 (431)
T PRK14903 231 LLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSS-IEIKIADAERLTEYVQDTFD 309 (431)
T ss_pred HHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCe-EEEEECchhhhhhhhhccCC
Confidence 3445678899999999999999998886 24599999999 99999999999998864 999999998765 247899
Q ss_pred EEEEecchhhhcc---h----------------hhHHHHHHHHhcccccCeEEEccCCee
Q 014247 181 VIISEWMGYMLLY---E----------------SMLGSVITARDRWLKRGGLILPSYATL 221 (428)
Q Consensus 181 lVvs~~~~~~l~~---~----------------~~~~~~l~~~~~~LkpgG~lv~~~~~~ 221 (428)
.|+++...+.+.. . ....++|..+.++|||||.++.+++++
T Consensus 310 ~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 369 (431)
T PRK14903 310 RILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV 369 (431)
T ss_pred EEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 9998653221111 1 123567889999999999999877653
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=1e-10 Score=111.55 Aligned_cols=101 Identities=18% Similarity=0.283 Sum_probs=75.7
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcC----CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc
Q 014247 100 YRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAG----AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE 174 (428)
Q Consensus 100 ~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g----~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~ 174 (428)
..+.+.+.+. .+..+|||+|||+|.++..+++.. ...|+|+|+| .++..|+++. .++.+..+|+.+++
T Consensus 74 i~~~l~~~l~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~------~~~~~~~~d~~~lp 146 (272)
T PRK11088 74 VANLLAERLD-EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY------PQVTFCVASSHRLP 146 (272)
T ss_pred HHHHHHHhcC-CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC------CCCeEEEeecccCC
Confidence 3344444432 355789999999999999888752 1379999999 9998887642 24889999999988
Q ss_pred CC-CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 175 ID-EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 175 ~~-~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
++ ++||+|++.. . +..++++.|+|||||.++..
T Consensus 147 ~~~~sfD~I~~~~---~-------~~~~~e~~rvLkpgG~li~~ 180 (272)
T PRK11088 147 FADQSLDAIIRIY---A-------PCKAEELARVVKPGGIVITV 180 (272)
T ss_pred CcCCceeEEEEec---C-------CCCHHHHHhhccCCCEEEEE
Confidence 75 7899999843 1 22357889999999999863
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.3e-10 Score=100.64 Aligned_cols=146 Identities=21% Similarity=0.263 Sum_probs=100.6
Q ss_pred HHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccc-c-C-CCc
Q 014247 103 AIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDV-E-I-DEE 178 (428)
Q Consensus 103 ~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l-~-~-~~~ 178 (428)
.|.+.+ .+|.+|||+|||.|.+...+.+....+.+|+|++ +.+..+.++ .+.++++|+.+- . + +++
T Consensus 6 ~I~~~I--~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r--------Gv~Viq~Dld~gL~~f~d~s 75 (193)
T PF07021_consen 6 IIAEWI--EPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR--------GVSVIQGDLDEGLADFPDQS 75 (193)
T ss_pred HHHHHc--CCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc--------CCCEEECCHHHhHhhCCCCC
Confidence 344443 6889999999999999999988644489999999 766555443 378999998763 1 2 389
Q ss_pred eeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCee---e---------EeecCCccchhhhhhhhh---ccC
Q 014247 179 VDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATL---Y---------MAPVTHPDRYSESIDFWR---NVY 243 (428)
Q Consensus 179 ~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~---~---------~~~~~~~~~~~~~~~~~~---~~~ 243 (428)
||.||.+. .+.....++.+|+++.|+ |...+++-++. . -+|++..-. .-|. +.+
T Consensus 76 FD~VIlsq---tLQ~~~~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lP-----y~WYdTPNih 144 (193)
T PF07021_consen 76 FDYVILSQ---TLQAVRRPDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALP-----YEWYDTPNIH 144 (193)
T ss_pred ccEEehHh---HHHhHhHHHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCC-----CcccCCCCcc
Confidence 99999654 777777899999988665 44555444332 1 123332111 1233 355
Q ss_pred CCCcchhHHHHHhcCCCCceEEeecC
Q 014247 244 GIDMSAMMPLAKQCAFEEPSVETITG 269 (428)
Q Consensus 244 ~~~~~~l~~~l~~~Gf~~~~~~~~~~ 269 (428)
.+.+.++..+.++.|+...+-..+..
T Consensus 145 ~~Ti~DFe~lc~~~~i~I~~~~~~~~ 170 (193)
T PF07021_consen 145 LCTIKDFEDLCRELGIRIEERVFLDG 170 (193)
T ss_pred cccHHHHHHHHHHCCCEEEEEEEEcC
Confidence 66788999999999998766555544
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.4e-10 Score=116.44 Aligned_cols=118 Identities=19% Similarity=0.182 Sum_probs=90.6
Q ss_pred HHHhccCCCCCCEEEEEcCCCcHHHHHHHHc--CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc--CCC
Q 014247 103 AIMQNQSFIEGKVVVDVGCGTGILSIFCAQA--GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE--IDE 177 (428)
Q Consensus 103 ~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~--~~~ 177 (428)
.+...+...++.+|||+|||+|..+..+++. +..+|+++|++ .++..++++++.+++.+ ++++++|+.++. +++
T Consensus 241 lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~-v~~~~~D~~~~~~~~~~ 319 (444)
T PRK14902 241 LVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTN-IETKALDARKVHEKFAE 319 (444)
T ss_pred HHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEeCCcccccchhcc
Confidence 3334455577899999999999999999886 34599999999 99999999999999875 999999998763 237
Q ss_pred ceeEEEEecchhhhc------------chhh-------HHHHHHHHhcccccCeEEEccCCee
Q 014247 178 EVDVIISEWMGYMLL------------YESM-------LGSVITARDRWLKRGGLILPSYATL 221 (428)
Q Consensus 178 ~~DlVvs~~~~~~l~------------~~~~-------~~~~l~~~~~~LkpgG~lv~~~~~~ 221 (428)
+||+|+++...+... ...+ ...++..+.++|||||.++.+++++
T Consensus 320 ~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 382 (444)
T PRK14902 320 KFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI 382 (444)
T ss_pred cCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence 899999875321110 0111 2467899999999999999766543
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.6e-10 Score=115.82 Aligned_cols=116 Identities=18% Similarity=0.175 Sum_probs=90.8
Q ss_pred HhccCCCCCCEEEEEcCCCcHHHHHHHHc--CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc----C-C
Q 014247 105 MQNQSFIEGKVVVDVGCGTGILSIFCAQA--GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE----I-D 176 (428)
Q Consensus 105 ~~~~~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~----~-~ 176 (428)
...+...+|.+|||+|||+|..+..+++. +..+|+++|++ .++..++++++..|+.+ |+++++|+.++. . .
T Consensus 245 ~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~-v~~~~~D~~~~~~~~~~~~ 323 (434)
T PRK14901 245 APLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKS-IKILAADSRNLLELKPQWR 323 (434)
T ss_pred HHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCe-EEEEeCChhhccccccccc
Confidence 34455678899999999999999999886 23589999999 99999999999999875 999999998765 2 3
Q ss_pred CceeEEEEecchhh---hcchh----------------hHHHHHHHHhcccccCeEEEccCCee
Q 014247 177 EEVDVIISEWMGYM---LLYES----------------MLGSVITARDRWLKRGGLILPSYATL 221 (428)
Q Consensus 177 ~~~DlVvs~~~~~~---l~~~~----------------~~~~~l~~~~~~LkpgG~lv~~~~~~ 221 (428)
++||.|+++...+. +...+ ....+|.++.++|||||+++.+++++
T Consensus 324 ~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 324 GYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred ccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 68999998653211 11111 14678999999999999999776654
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.9e-10 Score=109.08 Aligned_cols=107 Identities=23% Similarity=0.202 Sum_probs=81.6
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCC--CeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC
Q 014247 100 YRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGA--KRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID 176 (428)
Q Consensus 100 ~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~--~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~ 176 (428)
+...+.+.+...++.+|||||||+|.++..+++... .+|+++|.+ ++++.|+++++.++.. ++.++++|..+....
T Consensus 68 l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~-nV~~i~gD~~~~~~~ 146 (322)
T PRK13943 68 LMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIE-NVIFVCGDGYYGVPE 146 (322)
T ss_pred HHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEeCChhhcccc
Confidence 334455555667889999999999999999998632 369999999 9999999999988875 599999998765433
Q ss_pred -CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 177 -EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 177 -~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
.+||+|++.. ... .....+.+.|+|||++++
T Consensus 147 ~~~fD~Ii~~~---g~~------~ip~~~~~~LkpgG~Lvv 178 (322)
T PRK13943 147 FAPYDVIFVTV---GVD------EVPETWFTQLKEGGRVIV 178 (322)
T ss_pred cCCccEEEECC---chH------HhHHHHHHhcCCCCEEEE
Confidence 6799999753 221 122345678999998875
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.1e-10 Score=114.98 Aligned_cols=120 Identities=16% Similarity=0.102 Sum_probs=90.2
Q ss_pred HHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC---CC
Q 014247 103 AIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI---DE 177 (428)
Q Consensus 103 ~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~---~~ 177 (428)
.+...+...++.+|||+|||+|..+..+++. +..+|+|+|++ .++..++++++..++...+.+..+|...... .+
T Consensus 229 ~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~ 308 (426)
T TIGR00563 229 WVATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENE 308 (426)
T ss_pred HHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccccccccc
Confidence 3344455678899999999999999999986 44599999999 9999999999998886445567777765442 37
Q ss_pred ceeEEEEecchh--h-hcchh----------------hHHHHHHHHhcccccCeEEEccCCeee
Q 014247 178 EVDVIISEWMGY--M-LLYES----------------MLGSVITARDRWLKRGGLILPSYATLY 222 (428)
Q Consensus 178 ~~DlVvs~~~~~--~-l~~~~----------------~~~~~l~~~~~~LkpgG~lv~~~~~~~ 222 (428)
+||+|+++...+ . +...+ ....+|..+.++|||||.++.+++++.
T Consensus 309 ~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~ 372 (426)
T TIGR00563 309 QFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVL 372 (426)
T ss_pred ccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 899999864211 1 11111 136789999999999999998776543
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.1e-10 Score=108.39 Aligned_cols=107 Identities=14% Similarity=0.163 Sum_probs=82.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc--CCCceeEEEEec
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE--IDEEVDVIISEW 186 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~--~~~~~DlVvs~~ 186 (428)
.++++|||||||+|.++..+++. +..+|+++|++ .+++.|++.+...+..++++++.+|+.+.- .+++||+|+++.
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 45689999999999999988876 44589999999 999999998765555568999999987642 236899999875
Q ss_pred chhh-hcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 187 MGYM-LLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 187 ~~~~-l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
+... ........++++.+.+.|+|||++++.
T Consensus 145 ~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 145 FDGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred CCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 3211 111112478999999999999999864
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.7e-10 Score=107.55 Aligned_cols=124 Identities=25% Similarity=0.350 Sum_probs=90.0
Q ss_pred hccChhhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCC-CeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEE
Q 014247 90 MIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGA-KRVYAVDAS-DIAVQANEVVKANNLTDKVIVLH 167 (428)
Q Consensus 90 ~~~d~~r~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~-~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~ 167 (428)
.+-...-++.+.+.+......... +|||+|||||.++..+++... .+|+|+|+| ..++.|++++..+++ .++.++.
T Consensus 89 vliPr~dTe~Lve~~l~~~~~~~~-~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~ 166 (280)
T COG2890 89 VLIPRPDTELLVEAALALLLQLDK-RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL-VRVLVVQ 166 (280)
T ss_pred ceecCCchHHHHHHHHHhhhhcCC-cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEe
Confidence 333445556666665433322222 899999999999999999854 499999999 999999999999998 5577777
Q ss_pred cccccccCCCceeEEEEecchhhhc-----------------------chhhHHHHHHHHhcccccCeEEEcc
Q 014247 168 GRVEDVEIDEEVDVIISEWMGYMLL-----------------------YESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 168 ~d~~~l~~~~~~DlVvs~~~~~~l~-----------------------~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
+|..+- ..++||+||||+. |.-. +......++..+.+.|+|||.+++.
T Consensus 167 ~dlf~~-~~~~fDlIVsNPP-Yip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le 237 (280)
T COG2890 167 SDLFEP-LRGKFDLIVSNPP-YIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILE 237 (280)
T ss_pred eecccc-cCCceeEEEeCCC-CCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEE
Confidence 775542 2359999999873 1100 1123577788889999999988864
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.3e-10 Score=105.06 Aligned_cols=118 Identities=23% Similarity=0.199 Sum_probs=84.5
Q ss_pred hHHHHHHHHHhccCC-CCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccc
Q 014247 96 RTETYRAAIMQNQSF-IEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVED 172 (428)
Q Consensus 96 r~~~~~~~i~~~~~~-~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 172 (428)
.++.+.+.+...+.. ..+.+|||+|||+|.+++.+++. +..+|+|+|+| .+++.|++++..++ ++++++|+.+
T Consensus 69 ~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~~~ 144 (251)
T TIGR03704 69 RTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG----GTVHEGDLYD 144 (251)
T ss_pred cHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeechh
Confidence 345555555544321 23468999999999999998875 33489999999 99999999988765 4788899875
Q ss_pred ccC---CCceeEEEEecchhhh-----------cc------------hhhHHHHHHHHhcccccCeEEEcc
Q 014247 173 VEI---DEEVDVIISEWMGYML-----------LY------------ESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 173 l~~---~~~~DlVvs~~~~~~l-----------~~------------~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
... .++||+|++++...-. .+ ...+..++..+.++|+|||.+++.
T Consensus 145 ~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~ 215 (251)
T TIGR03704 145 ALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVE 215 (251)
T ss_pred hcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 321 3679999998731100 01 112457888888999999999864
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.3e-10 Score=106.80 Aligned_cols=128 Identities=16% Similarity=0.151 Sum_probs=89.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEEecch
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWMG 188 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~~~~ 188 (428)
....+|||+|||+|.++..+++. +..+|+++|++ .+++.++++. .+++++++|+.++....+||+|++++..
T Consensus 63 ~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~------~~v~~v~~D~~e~~~~~kFDlIIsNPPF 136 (279)
T PHA03411 63 HCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL------PEAEWITSDVFEFESNEKFDVVISNPPF 136 (279)
T ss_pred ccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC------cCCEEEECchhhhcccCCCcEEEEcCCc
Confidence 34569999999999999888775 34599999999 9998887753 2489999999987666789999998743
Q ss_pred hhhcchh-----------------hHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhhccCCCCcchhH
Q 014247 189 YMLLYES-----------------MLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAMM 251 (428)
Q Consensus 189 ~~l~~~~-----------------~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 251 (428)
+.+.... .+..++.....+|+|+|.+++. ......|. ..++..++.
T Consensus 137 ~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~--------yss~~~y~---------~sl~~~~y~ 199 (279)
T PHA03411 137 GKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA--------YSGRPYYD---------GTMKSNKYL 199 (279)
T ss_pred cccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE--------Eecccccc---------ccCCHHHHH
Confidence 2221110 0355667777778888865543 22222221 234567788
Q ss_pred HHHHhcCCCC
Q 014247 252 PLAKQCAFEE 261 (428)
Q Consensus 252 ~~l~~~Gf~~ 261 (428)
.++.+.||..
T Consensus 200 ~~l~~~g~~~ 209 (279)
T PHA03411 200 KWSKQTGLVT 209 (279)
T ss_pred HHHHhcCcEe
Confidence 8888888863
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.9e-10 Score=105.02 Aligned_cols=102 Identities=19% Similarity=0.196 Sum_probs=78.5
Q ss_pred CCCEEEEEcCCCcHHHHHHHHc----CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEEec
Q 014247 112 EGKVVVDVGCGTGILSIFCAQA----GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEW 186 (428)
Q Consensus 112 ~~~~VLDiGcGtG~ls~~la~~----g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~~ 186 (428)
.+.+|||+|||+|.++..+++. ...+|+++|++ .++..|+++.. ++.++++|+......++||+||+++
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~------~~~~~~~D~~~~~~~~~FDlIIsNP 122 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP------EATWINADALTTEFDTLFDMAISNP 122 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc------CCEEEEcchhcccccCCccEEEECC
Confidence 4679999999999999998874 23489999999 99998887642 3789999998766667999999998
Q ss_pred chhhhc---------chhhHHHHHHHHhcccccCeEEEccCC
Q 014247 187 MGYMLL---------YESMLGSVITARDRWLKRGGLILPSYA 219 (428)
Q Consensus 187 ~~~~l~---------~~~~~~~~l~~~~~~LkpgG~lv~~~~ 219 (428)
...-+. .......++..+.+++++|+.++|...
T Consensus 123 PY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ILP~~~ 164 (241)
T PHA03412 123 PFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFIIPQMS 164 (241)
T ss_pred CCCCccccccCCcccccHHHHHHHHHHHHHcCCCEEEeCccc
Confidence 432111 112256688888888899998887654
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=9e-11 Score=105.48 Aligned_cols=148 Identities=22% Similarity=0.232 Sum_probs=101.4
Q ss_pred EEEEEcCCCcHHHHHHHHcCCC---eEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc-----CCCceeEEEEe
Q 014247 115 VVVDVGCGTGILSIFCAQAGAK---RVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE-----IDEEVDVIISE 185 (428)
Q Consensus 115 ~VLDiGcGtG~ls~~la~~g~~---~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~-----~~~~~DlVvs~ 185 (428)
+||+||||.|.....+.+.... +|+++|.| ..++..+++...+. .++.....|+..-. .++++|+|++-
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~Dlt~~~~~~~~~~~svD~it~I 151 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE--SRVEAFVWDLTSPSLKEPPEEGSVDIITLI 151 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch--hhhcccceeccchhccCCCCcCccceEEEE
Confidence 8999999999998888876332 89999999 88877776654432 34555555654422 13899999986
Q ss_pred cchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCC---ccchhhhhhhhh---ccCCCCcchhHHHHHhcCC
Q 014247 186 WMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTH---PDRYSESIDFWR---NVYGIDMSAMMPLAKQCAF 259 (428)
Q Consensus 186 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~---~~~~~~~~~~~~---~~~~~~~~~l~~~l~~~Gf 259 (428)
.+.+.+..+ ....++..+.++|||||.+++.+...|...... .....+....-. .+|.|+.+.+..++.++||
T Consensus 152 FvLSAi~pe-k~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~agf 230 (264)
T KOG2361|consen 152 FVLSAIHPE-KMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKGQCISENFYVRGDGTRAYFFTEEELDELFTKAGF 230 (264)
T ss_pred EEEeccChH-HHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCCceeecceEEccCCceeeeccHHHHHHHHHhccc
Confidence 544444433 478889999999999999999877665432111 111111111111 2588999999999999999
Q ss_pred CCceEE
Q 014247 260 EEPSVE 265 (428)
Q Consensus 260 ~~~~~~ 265 (428)
...+.+
T Consensus 231 ~~~~~~ 236 (264)
T KOG2361|consen 231 EEVQLE 236 (264)
T ss_pred chhccc
Confidence 876543
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.4e-10 Score=104.49 Aligned_cols=97 Identities=26% Similarity=0.339 Sum_probs=72.0
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEeChHHHHHHHHHHHHCCCCCcEEEEEccccccc--------C-CCc
Q 014247 110 FIEGKVVVDVGCGTGILSIFCAQA-G-AKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDVE--------I-DEE 178 (428)
Q Consensus 110 ~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~giD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~--------~-~~~ 178 (428)
..++.+|||||||+|.++..+++. + ..+|+|||+++|. ... +++++++|+.+.. + +++
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~----------~~~-~v~~i~~D~~~~~~~~~i~~~~~~~~ 117 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMD----------PIV-GVDFLQGDFRDELVLKALLERVGDSK 117 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccccc----------CCC-CcEEEecCCCChHHHHHHHHHhCCCC
Confidence 467889999999999999999887 3 2489999999741 222 4899999998853 2 378
Q ss_pred eeEEEEecchhhhcch--------hhHHHHHHHHhcccccCeEEEcc
Q 014247 179 VDVIISEWMGYMLLYE--------SMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 179 ~DlVvs~~~~~~l~~~--------~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
||+|+|+...+..... .....+++.+.++|+|||.+++.
T Consensus 118 ~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~ 164 (209)
T PRK11188 118 VQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVK 164 (209)
T ss_pred CCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 9999997522221110 11356899999999999999863
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.9e-10 Score=88.96 Aligned_cols=99 Identities=37% Similarity=0.480 Sum_probs=79.8
Q ss_pred EEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC--CCceeEEEEecchhhh
Q 014247 115 VVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI--DEEVDVIISEWMGYML 191 (428)
Q Consensus 115 ~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~--~~~~DlVvs~~~~~~l 191 (428)
+|||+|||.|.++..+++....+++++|.+ .++..+++..... ...++.++..|+.+... .++||+|++.. .+
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~---~~ 76 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAAL-LADNVEVLKGDAEELPPEADESFDVIISDP---PL 76 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcc-cccceEEEEcChhhhccccCCceEEEEEcc---ce
Confidence 489999999999999988556699999999 8887777543333 33469999999988763 47899999876 44
Q ss_pred cc-hhhHHHHHHHHhcccccCeEEEcc
Q 014247 192 LY-ESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 192 ~~-~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
.+ ......+++.+.+.|+|||.+++.
T Consensus 77 ~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 77 HHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred eehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 44 667889999999999999999865
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=99.11 E-value=9.2e-10 Score=98.88 Aligned_cols=105 Identities=17% Similarity=0.152 Sum_probs=81.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccc-c-C--C-CceeEEEE
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDV-E-I--D-EEVDVIIS 184 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l-~-~--~-~~~DlVvs 184 (428)
..+.+|||++||+|.+++.++.+|+++|+++|.+ ..+..++++++.+++.++++++++|+.+. . . . ..||+|+.
T Consensus 48 ~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 48 IQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred cCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 4678999999999999999999999999999999 99999999999999877899999998553 2 1 1 24788888
Q ss_pred ecchhhhcchhhHHHHHHHH--hcccccCeEEEccCC
Q 014247 185 EWMGYMLLYESMLGSVITAR--DRWLKRGGLILPSYA 219 (428)
Q Consensus 185 ~~~~~~l~~~~~~~~~l~~~--~~~LkpgG~lv~~~~ 219 (428)
.+.. .. .....++..+ ..+|+++|.+++...
T Consensus 128 DPPy-~~---~~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 128 DPPF-FN---GALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred CcCC-CC---CcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 7632 11 1233444433 458999999887643
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=99.11 E-value=6.8e-10 Score=98.11 Aligned_cols=107 Identities=19% Similarity=0.280 Sum_probs=78.8
Q ss_pred HHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC-Ccee
Q 014247 103 AIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID-EEVD 180 (428)
Q Consensus 103 ~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~-~~~D 180 (428)
.+.+.+...++.+|||+|||+|.++..+++. ..+|+++|++ .+++.+++++.. .++++++++|+.+++.+ ..||
T Consensus 4 ~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~~---~~~v~ii~~D~~~~~~~~~~~d 79 (169)
T smart00650 4 KIVRAANLRPGDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFAA---ADNLTVIHGDALKFDLPKLQPY 79 (169)
T ss_pred HHHHhcCCCCcCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhcc---CCCEEEEECchhcCCccccCCC
Confidence 4455555677889999999999999999998 4599999999 899999887743 24699999999998765 4599
Q ss_pred EEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 181 VIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 181 lVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
+|+++...+ . ....+..+++. ..+.++|.+++.
T Consensus 80 ~vi~n~Py~-~-~~~~i~~~l~~--~~~~~~~~l~~q 112 (169)
T smart00650 80 KVVGNLPYN-I-STPILFKLLEE--PPAFRDAVLMVQ 112 (169)
T ss_pred EEEECCCcc-c-HHHHHHHHHhc--CCCcceEEEEEE
Confidence 999986321 1 12334444432 224577877754
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=8.9e-10 Score=105.40 Aligned_cols=108 Identities=15% Similarity=0.114 Sum_probs=83.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCC--C--CCcEEEEEcccccccC--CCceeEE
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANN--L--TDKVIVLHGRVEDVEI--DEEVDVI 182 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~--~--~~~v~~~~~d~~~l~~--~~~~DlV 182 (428)
..+++||+||||+|.++..+++. +..+|++||++ .+++.|++.+...+ . ..+++++.+|+..... .++||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 45679999999999999999887 67799999999 99999999876432 2 4579999999877432 4789999
Q ss_pred EEecchhhhcc-hhhHHHHHHHHhcccccCeEEEccC
Q 014247 183 ISEWMGYMLLY-ESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 183 vs~~~~~~l~~-~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
+++........ .....++++.+.+.|+|||+++...
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 99752221111 1123678899999999999998643
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.10 E-value=8e-10 Score=104.15 Aligned_cols=104 Identities=17% Similarity=0.201 Sum_probs=86.9
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc--C-----CCce
Q 014247 110 FIEGKVVVDVGCGTGILSIFCAQA-G-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE--I-----DEEV 179 (428)
Q Consensus 110 ~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~--~-----~~~~ 179 (428)
..+.++|||||+++|..++.+|+. + ..+|+++|.+ +.++.|++++++.|+.++|+++.+|+.+.- + .++|
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F 195 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY 195 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence 356789999999999999999985 2 3479999999 999999999999999999999999986631 1 2589
Q ss_pred eEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCC
Q 014247 180 DVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYA 219 (428)
Q Consensus 180 DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 219 (428)
|+|+... .......++..+.++|+|||++++...
T Consensus 196 D~VFIDa------~K~~Y~~y~e~~l~lL~~GGvIV~DNv 229 (278)
T PLN02476 196 DFAFVDA------DKRMYQDYFELLLQLVRVGGVIVMDNV 229 (278)
T ss_pred CEEEECC------CHHHHHHHHHHHHHhcCCCcEEEEecC
Confidence 9999764 234577788888899999999997654
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.3e-09 Score=105.99 Aligned_cols=111 Identities=14% Similarity=0.143 Sum_probs=82.0
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC--
Q 014247 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI-- 175 (428)
Q Consensus 99 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~-- 175 (428)
.+.+.+.+.+...++.+|||+|||+|.+++.+++.+ .+|+|+|.+ .+++.|+++++.+++ ++++|+++|+.++..
T Consensus 160 ~l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~D~~~~~~~~ 237 (315)
T PRK03522 160 QLYATARDWVRELPPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAELGL-TNVQFQALDSTQFATAQ 237 (315)
T ss_pred HHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEcCHHHHHHhc
Confidence 334444444443467899999999999999999986 599999999 999999999999998 469999999987642
Q ss_pred CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 176 DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 176 ~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
.++||+|++++.-. .....+++.+.+ ++|+++++++
T Consensus 238 ~~~~D~Vv~dPPr~-----G~~~~~~~~l~~-~~~~~ivyvs 273 (315)
T PRK03522 238 GEVPDLVLVNPPRR-----GIGKELCDYLSQ-MAPRFILYSS 273 (315)
T ss_pred CCCCeEEEECCCCC-----CccHHHHHHHHH-cCCCeEEEEE
Confidence 25799999987421 112333333333 6777777654
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.8e-10 Score=101.11 Aligned_cols=105 Identities=19% Similarity=0.272 Sum_probs=85.2
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC-------CCcee
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQA-G-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI-------DEEVD 180 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~-------~~~~D 180 (428)
.+.++||+|||++|..++.+|+. + ..+|+.+|.+ +.++.|++.++..|+.++|+++.+|+.+.-. .++||
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD 123 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFD 123 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEE
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCcee
Confidence 56789999999999999999986 2 3499999999 9999999999999999999999999876311 25899
Q ss_pred EEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCee
Q 014247 181 VIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATL 221 (428)
Q Consensus 181 lVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 221 (428)
+|+... ........+..+.++|+|||.++....-+
T Consensus 124 ~VFiDa------~K~~y~~y~~~~~~ll~~ggvii~DN~l~ 158 (205)
T PF01596_consen 124 FVFIDA------DKRNYLEYFEKALPLLRPGGVIIADNVLW 158 (205)
T ss_dssp EEEEES------TGGGHHHHHHHHHHHEEEEEEEEEETTTG
T ss_pred EEEEcc------cccchhhHHHHHhhhccCCeEEEEccccc
Confidence 999764 23446667777889999999999876543
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.8e-09 Score=110.02 Aligned_cols=112 Identities=20% Similarity=0.229 Sum_probs=87.2
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc-
Q 014247 97 TETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE- 174 (428)
Q Consensus 97 ~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~- 174 (428)
++.+.+.+.+.+...++.+|||+|||+|.++..+++.+ .+|+|+|+| .+++.|++++..+++.+ ++++++|+.+..
T Consensus 282 ~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~~-v~~~~~d~~~~l~ 359 (443)
T PRK13168 282 NQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGLDN-VTFYHANLEEDFT 359 (443)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEEeChHHhhh
Confidence 45566666666666778999999999999999999985 599999999 99999999999998864 999999987532
Q ss_pred ---C-CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 175 ---I-DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 175 ---~-~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
. .++||+|++++.-. . ...+++.+.+ ++|+++++++
T Consensus 360 ~~~~~~~~fD~Vi~dPPr~-----g-~~~~~~~l~~-~~~~~ivyvS 399 (443)
T PRK13168 360 DQPWALGGFDKVLLDPPRA-----G-AAEVMQALAK-LGPKRIVYVS 399 (443)
T ss_pred hhhhhcCCCCEEEECcCCc-----C-hHHHHHHHHh-cCCCeEEEEE
Confidence 2 25799999986321 1 2344555555 6888888765
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.4e-10 Score=104.34 Aligned_cols=96 Identities=24% Similarity=0.235 Sum_probs=71.3
Q ss_pred EEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC-CCceeEEEEecchhhhc
Q 014247 115 VVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI-DEEVDVIISEWMGYMLL 192 (428)
Q Consensus 115 ~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~-~~~~DlVvs~~~~~~l~ 192 (428)
.++|+|||+|..+..+|.. +++|+|+|+| .|+..|++.....-.....++...++.++.- ++++|+|+|.. +++
T Consensus 36 ~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aq---a~H 111 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQ---AVH 111 (261)
T ss_pred eEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhh---hHH
Confidence 8999999999888888887 8899999999 9999887754322111123344444444432 48999999865 665
Q ss_pred chhhHHHHHHHHhcccccCe-EEE
Q 014247 193 YESMLGSVITARDRWLKRGG-LIL 215 (428)
Q Consensus 193 ~~~~~~~~l~~~~~~LkpgG-~lv 215 (428)
|.. ++.+++.++|+||+.| .+.
T Consensus 112 WFd-le~fy~~~~rvLRk~Gg~ia 134 (261)
T KOG3010|consen 112 WFD-LERFYKEAYRVLRKDGGLIA 134 (261)
T ss_pred hhc-hHHHHHHHHHHcCCCCCEEE
Confidence 554 9999999999998877 443
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.2e-09 Score=95.86 Aligned_cols=170 Identities=18% Similarity=0.182 Sum_probs=114.7
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC-
Q 014247 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI- 175 (428)
Q Consensus 99 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~- 175 (428)
.+.+.+.+.+. ..+.+|||||||||..+.++|+. ..-...-.|.+ ....-.+..+...++.+-..-+..|+..-.-
T Consensus 13 pIl~vL~~~l~-~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~ 91 (204)
T PF06080_consen 13 PILEVLKQYLP-DSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWP 91 (204)
T ss_pred HHHHHHHHHhC-ccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCc
Confidence 44556666553 23336999999999999999997 33366688888 5555556666666766545555666655311
Q ss_pred --------CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCc--cchhhhhhhhhccCCC
Q 014247 176 --------DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHP--DRYSESIDFWRNVYGI 245 (428)
Q Consensus 176 --------~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 245 (428)
.+.||+|+|..|.|+..+.. .+.+++.+.++|++||.|++..+..+...++.+ ..++....-....+|+
T Consensus 92 ~~~~~~~~~~~~D~i~~~N~lHI~p~~~-~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~Gi 170 (204)
T PF06080_consen 92 WELPAPLSPESFDAIFCINMLHISPWSA-VEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGI 170 (204)
T ss_pred cccccccCCCCcceeeehhHHHhcCHHH-HHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCc
Confidence 25899999988777776555 789999999999999999986655443333322 1222222222234565
Q ss_pred -CcchhHHHHHhcCCCCceEEeecCC
Q 014247 246 -DMSAMMPLAKQCAFEEPSVETITGE 270 (428)
Q Consensus 246 -~~~~l~~~l~~~Gf~~~~~~~~~~~ 270 (428)
|++++..+..++|+.......++..
T Consensus 171 RD~e~v~~lA~~~GL~l~~~~~MPAN 196 (204)
T PF06080_consen 171 RDIEDVEALAAAHGLELEEDIDMPAN 196 (204)
T ss_pred cCHHHHHHHHHHCCCccCcccccCCC
Confidence 6888999999999987666555543
|
The function of this family is unknown. |
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=99.05 E-value=2e-09 Score=104.36 Aligned_cols=151 Identities=17% Similarity=0.179 Sum_probs=99.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHH-----HHCCC-CCcEEEEEccccccc--CCCcee
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVV-----KANNL-TDKVIVLHGRVEDVE--IDEEVD 180 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~-----~~~~~-~~~v~~~~~d~~~l~--~~~~~D 180 (428)
...++||+||||+|..+..+.+. +..+|++||++ .+++.|++.. ....+ .++++++.+|+.+.- ..++||
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 55679999999999999888887 35799999999 9999998621 11222 468999999988742 237899
Q ss_pred EEEEecchhhh--cchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhhccCCCCcchhHHHHHhcC
Q 014247 181 VIISEWMGYML--LYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAMMPLAKQCA 258 (428)
Q Consensus 181 lVvs~~~~~~l--~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G 258 (428)
+|+++...... .....-.++++.+++.|+|||+++......+ . ....+| .+...++++|
T Consensus 229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~--------~--~~~~~~---------~i~~tL~~af 289 (374)
T PRK01581 229 VIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPA--------D--APLVYW---------SIGNTIEHAG 289 (374)
T ss_pred EEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChh--------h--hHHHHH---------HHHHHHHHhC
Confidence 99997532111 1112236789999999999999886532111 0 011112 3567778888
Q ss_pred CCCceEEeecCCccccCCeeEE
Q 014247 259 FEEPSVETITGENVLTWPHVVK 280 (428)
Q Consensus 259 f~~~~~~~~~~~~~ls~p~~~~ 280 (428)
|........-|..--.|.+.+.
T Consensus 290 ~~v~~y~t~vPsyg~~WgF~~a 311 (374)
T PRK01581 290 LTVKSYHTIVPSFGTDWGFHIA 311 (374)
T ss_pred CceEEEEEecCCCCCceEEEEE
Confidence 8766555554433222444433
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.2e-09 Score=99.00 Aligned_cols=105 Identities=20% Similarity=0.306 Sum_probs=88.6
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEE-ccccccc---CCCceeEE
Q 014247 110 FIEGKVVVDVGCGTGILSIFCAQA-G-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLH-GRVEDVE---IDEEVDVI 182 (428)
Q Consensus 110 ~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~-~d~~~l~---~~~~~DlV 182 (428)
..+.++||+||++.|..++.+|.. . ..++++||.+ ++++.|++++++.|+.++|+++. +|..+.- ..++||+|
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDli 136 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLV 136 (219)
T ss_pred hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEE
Confidence 357899999999999999999986 3 4589999999 99999999999999999999999 5765532 24899999
Q ss_pred EEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCe
Q 014247 183 ISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYAT 220 (428)
Q Consensus 183 vs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 220 (428)
+... .....+.++..+.++|+|||+++....-
T Consensus 137 FIDa------dK~~yp~~le~~~~lLr~GGliv~DNvl 168 (219)
T COG4122 137 FIDA------DKADYPEYLERALPLLRPGGLIVADNVL 168 (219)
T ss_pred EEeC------ChhhCHHHHHHHHHHhCCCcEEEEeecc
Confidence 9754 4456788899999999999999977543
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.1e-09 Score=106.51 Aligned_cols=108 Identities=19% Similarity=0.220 Sum_probs=81.8
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHH---------CCCCCcEEEEEcccccc------cC
Q 014247 112 EGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKA---------NNLTDKVIVLHGRVEDV------EI 175 (428)
Q Consensus 112 ~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~---------~~~~~~v~~~~~d~~~l------~~ 175 (428)
++.+|||+|||-|.-..-..+++.+.++|+|++ ..++.|+++... ....-...++.+|.... ..
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 788999999999998888888889999999999 999999988722 11112467788886542 11
Q ss_pred C-CceeEEEEec-chhhhcchhhHHHHHHHHhcccccCeEEEccCC
Q 014247 176 D-EEVDVIISEW-MGYMLLYESMLGSVITARDRWLKRGGLILPSYA 219 (428)
Q Consensus 176 ~-~~~DlVvs~~-~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 219 (428)
. .+||+|-|.. |.+.+..+.....+|..+...|+|||.+|.+.+
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTP 187 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 2 5999999976 677777888899999999999999999996543
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.6e-09 Score=97.54 Aligned_cols=100 Identities=24% Similarity=0.349 Sum_probs=71.6
Q ss_pred ccCCCCCCEEEEEcCCCcHHHHHHHHc--CCCeEEEEeChHHHHHHHHHHHHCCCCCcEEEEEccccccc--------C-
Q 014247 107 NQSFIEGKVVVDVGCGTGILSIFCAQA--GAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDVE--------I- 175 (428)
Q Consensus 107 ~~~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~giD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~--------~- 175 (428)
.....++.+|||+|||+|.++..+++. +..+|+++|++++. .. .++.++++|+.+.. .
T Consensus 27 ~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----------~~-~~i~~~~~d~~~~~~~~~l~~~~~ 95 (188)
T TIGR00438 27 FKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----------PI-ENVDFIRGDFTDEEVLNKIRERVG 95 (188)
T ss_pred hcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----------cC-CCceEEEeeCCChhHHHHHHHHhC
Confidence 444578899999999999999988876 34479999999432 11 24788888987642 2
Q ss_pred CCceeEEEEecchhh-----hcch---hhHHHHHHHHhcccccCeEEEcc
Q 014247 176 DEEVDVIISEWMGYM-----LLYE---SMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 176 ~~~~DlVvs~~~~~~-----l~~~---~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
.++||+|+++...+. +.+. ...+.++..+.++|+|||++++.
T Consensus 96 ~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~ 145 (188)
T TIGR00438 96 DDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVK 145 (188)
T ss_pred CCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence 367999998641110 1111 23478899999999999999863
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.5e-09 Score=102.80 Aligned_cols=109 Identities=28% Similarity=0.327 Sum_probs=83.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCC-CcEEEEEcccccc----cCCCceeEEEE
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLT-DKVIVLHGRVEDV----EIDEEVDVIIS 184 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~-~~v~~~~~d~~~l----~~~~~~DlVvs 184 (428)
.++++|||+=|=||.+++.++..|+++|++||.| ..++.|++++..|++. +++++++.|+.+. ...++||+||+
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 4689999999999999999999999999999999 9999999999999986 6799999998763 12379999999
Q ss_pred ecchhh---hcchhhHHHHHHHHhcccccCeEEEccCC
Q 014247 185 EWMGYM---LLYESMLGSVITARDRWLKRGGLILPSYA 219 (428)
Q Consensus 185 ~~~~~~---l~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 219 (428)
.+..+. ..-..+...++..+.++|+|||.++.+++
T Consensus 202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 202 DPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp --SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 875322 11134577888889999999999886543
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.5e-09 Score=97.75 Aligned_cols=127 Identities=21% Similarity=0.278 Sum_probs=94.7
Q ss_pred ccChhhHHHHHHHHHhccC---CCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEE
Q 014247 91 IKDRVRTETYRAAIMQNQS---FIEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIV 165 (428)
Q Consensus 91 ~~d~~r~~~~~~~i~~~~~---~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~ 165 (428)
+-.+..++.+.+++.+.+. ..++..+||+|||+|..++.++.. +...|+|||.| ..+..|.+++..+++.+++.+
T Consensus 124 lIPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v 203 (328)
T KOG2904|consen 124 LIPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEV 203 (328)
T ss_pred eecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEE
Confidence 3345567777777776653 245568999999999999988875 66699999999 899999999999999999999
Q ss_pred EEccccccc------CCCceeEEEEecchhhh------------------------cchhhHHHHHHHHhcccccCeEEE
Q 014247 166 LHGRVEDVE------IDEEVDVIISEWMGYML------------------------LYESMLGSVITARDRWLKRGGLIL 215 (428)
Q Consensus 166 ~~~d~~~l~------~~~~~DlVvs~~~~~~l------------------------~~~~~~~~~l~~~~~~LkpgG~lv 215 (428)
++-+++.-. +.+++|+++|++. |+. .....+-.++.-+.|.|+|||.+.
T Consensus 204 ~~~~me~d~~~~~~l~~~~~dllvsNPP-YI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~ 282 (328)
T KOG2904|consen 204 IHNIMESDASDEHPLLEGKIDLLVSNPP-YIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQ 282 (328)
T ss_pred EecccccccccccccccCceeEEecCCC-cccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEE
Confidence 977665421 1389999999873 111 111124455667789999999988
Q ss_pred ccC
Q 014247 216 PSY 218 (428)
Q Consensus 216 ~~~ 218 (428)
+..
T Consensus 283 le~ 285 (328)
T KOG2904|consen 283 LEL 285 (328)
T ss_pred EEe
Confidence 653
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.8e-09 Score=106.37 Aligned_cols=110 Identities=26% Similarity=0.249 Sum_probs=91.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCC-CcEEEEEcccccccC-----CCceeEEE
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLT-DKVIVLHGRVEDVEI-----DEEVDVII 183 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~-~~v~~~~~d~~~l~~-----~~~~DlVv 183 (428)
..|++|||+=|=||.+++.+|..|+++|++||+| ..+..|+++++.|++. .++.++++|+.++-. ..+||+|+
T Consensus 216 ~~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 216 AAGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393)
T ss_pred ccCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence 3499999999999999999999999999999999 9999999999999984 568999999877522 25999999
Q ss_pred Eecchhh------hcchhhHHHHHHHHhcccccCeEEEccCCe
Q 014247 184 SEWMGYM------LLYESMLGSVITARDRWLKRGGLILPSYAT 220 (428)
Q Consensus 184 s~~~~~~------l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 220 (428)
..+..+. .....+...++..+.++|+|||.++.+++.
T Consensus 296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~ 338 (393)
T COG1092 296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCS 338 (393)
T ss_pred ECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 9875322 122345778888899999999999976543
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.6e-09 Score=97.93 Aligned_cols=152 Identities=20% Similarity=0.212 Sum_probs=98.7
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHH-C------C----CCCcEEEE
Q 014247 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKA-N------N----LTDKVIVL 166 (428)
Q Consensus 99 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~-~------~----~~~~v~~~ 166 (428)
.+.+.+.. +...++.+||+.|||.|.-...+|+.|. +|+|+|+| ..++.+.+.... . . -..+|+++
T Consensus 25 ~L~~~~~~-l~~~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~ 102 (218)
T PF05724_consen 25 ALVEYLDS-LALKPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIY 102 (218)
T ss_dssp HHHHHHHH-HTTSTSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEE
T ss_pred HHHHHHHh-cCCCCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEE
Confidence 44444444 3456778999999999999999999998 89999999 666665332111 0 0 12358999
Q ss_pred EcccccccCC--CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhhccCC
Q 014247 167 HGRVEDVEID--EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYG 244 (428)
Q Consensus 167 ~~d~~~l~~~--~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (428)
++|+.+++.. ++||+|+-......+ ...+.....+.+.++|+|||.+++-... | +. . .....-+.
T Consensus 103 ~gDfF~l~~~~~g~fD~iyDr~~l~Al-pp~~R~~Ya~~l~~ll~p~g~~lLi~l~-~--~~--~-------~~~GPPf~ 169 (218)
T PF05724_consen 103 CGDFFELPPEDVGKFDLIYDRTFLCAL-PPEMRERYAQQLASLLKPGGRGLLITLE-Y--PQ--G-------EMEGPPFS 169 (218)
T ss_dssp ES-TTTGGGSCHHSEEEEEECSSTTTS--GGGHHHHHHHHHHCEEEEEEEEEEEEE-S---C--S-------CSSSSS--
T ss_pred EcccccCChhhcCCceEEEEecccccC-CHHHHHHHHHHHHHHhCCCCcEEEEEEE-c--CC--c-------CCCCcCCC
Confidence 9999998765 679999987644334 5667899999999999999995432111 1 00 0 01122345
Q ss_pred CCcchhHHHHHhcCCCCceEEe
Q 014247 245 IDMSAMMPLAKQCAFEEPSVET 266 (428)
Q Consensus 245 ~~~~~l~~~l~~~Gf~~~~~~~ 266 (428)
++.+++..++. .+|+...++.
T Consensus 170 v~~~ev~~l~~-~~f~i~~l~~ 190 (218)
T PF05724_consen 170 VTEEEVRELFG-PGFEIEELEE 190 (218)
T ss_dssp --HHHHHHHHT-TTEEEEEEEE
T ss_pred CCHHHHHHHhc-CCcEEEEEec
Confidence 66778888776 6776655443
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.5e-09 Score=115.83 Aligned_cols=128 Identities=20% Similarity=0.252 Sum_probs=92.3
Q ss_pred hccChhhHHHHHHHHHhccC-CCCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEeCh-HHHHHHHHHHHHCCC-------
Q 014247 90 MIKDRVRTETYRAAIMQNQS-FIEGKVVVDVGCGTGILSIFCAQAG-AKRVYAVDAS-DIAVQANEVVKANNL------- 159 (428)
Q Consensus 90 ~~~d~~r~~~~~~~i~~~~~-~~~~~~VLDiGcGtG~ls~~la~~g-~~~V~giD~s-~~~~~a~~~~~~~~~------- 159 (428)
.+-.+..++.+.+.+..... ..++.+|||+|||+|.+++.+++.. ..+|+|+|+| .+++.|++++..|++
T Consensus 95 VLIPRpeTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~ 174 (1082)
T PLN02672 95 IFIPEDWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPV 174 (1082)
T ss_pred cccCchhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccc
Confidence 44445556666666433211 1245799999999999999999873 4599999999 999999999998754
Q ss_pred --------CCcEEEEEcccccccCC--CceeEEEEecchhhh------------cch-----------------------
Q 014247 160 --------TDKVIVLHGRVEDVEID--EEVDVIISEWMGYML------------LYE----------------------- 194 (428)
Q Consensus 160 --------~~~v~~~~~d~~~l~~~--~~~DlVvs~~~~~~l------------~~~----------------------- 194 (428)
.++++|+++|+.+.... .+||+|||++. |+. .++
T Consensus 175 ~~~~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPP-YI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dG 253 (1082)
T PLN02672 175 YDGEGKTLLDRVEFYESDLLGYCRDNNIELDRIVGCIP-QILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFG 253 (1082)
T ss_pred cccccccccccEEEEECchhhhccccCCceEEEEECCC-cCCCcchhhcChhhhhccccccccccCccccccCCCCCCcH
Confidence 25799999998764322 37999999873 110 010
Q ss_pred -hhHHHHHHHHhcccccCeEEEccC
Q 014247 195 -SMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 195 -~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
.....++....++|+|||.+++..
T Consensus 254 L~~yr~i~~~a~~~L~pgG~l~lEi 278 (1082)
T PLN02672 254 LGLIARAVEEGISVIKPMGIMIFNM 278 (1082)
T ss_pred HHHHHHHHHHHHHhccCCCEEEEEE
Confidence 123667788889999999998653
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.2e-09 Score=95.70 Aligned_cols=125 Identities=15% Similarity=0.035 Sum_probs=83.7
Q ss_pred EEEeCh-HHHHHHHHHHHHCC--CCCcEEEEEcccccccCC-CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEE
Q 014247 139 YAVDAS-DIAVQANEVVKANN--LTDKVIVLHGRVEDVEID-EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLI 214 (428)
Q Consensus 139 ~giD~s-~~~~~a~~~~~~~~--~~~~v~~~~~d~~~l~~~-~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~l 214 (428)
+|+|+| +|++.|+++.+..+ ..++++++++|+.+++++ ++||+|++.. .+++..++..++++++++|||||.+
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~---~l~~~~d~~~~l~ei~rvLkpGG~l 77 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGY---GLRNVVDRLRAMKEMYRVLKPGSRV 77 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecc---hhhcCCCHHHHHHHHHHHcCcCeEE
Confidence 489999 99999987765322 234699999999999876 6899999854 6777778999999999999999999
Q ss_pred EccCCeeeEee--------------cCCccchh---hhhhhhhcc-CCCCcchhHHHHHhcCCCCceEEe
Q 014247 215 LPSYATLYMAP--------------VTHPDRYS---ESIDFWRNV-YGIDMSAMMPLAKQCAFEEPSVET 266 (428)
Q Consensus 215 v~~~~~~~~~~--------------~~~~~~~~---~~~~~~~~~-~~~~~~~l~~~l~~~Gf~~~~~~~ 266 (428)
++......-.. ........ .....+... ...+.+++..+++++||+.+....
T Consensus 78 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~ 147 (160)
T PLN02232 78 SILDFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYE 147 (160)
T ss_pred EEEECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEE
Confidence 86533210000 00000000 000001111 223577889999999999876554
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.2e-09 Score=100.23 Aligned_cols=143 Identities=22% Similarity=0.249 Sum_probs=93.8
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc-CCCceeEEEEecchh
Q 014247 112 EGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE-IDEEVDVIISEWMGY 189 (428)
Q Consensus 112 ~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~-~~~~~DlVvs~~~~~ 189 (428)
...++||||+|.|..+..++.. +++|++.|.| .|... +++.|. +++ +..++. .+.+||+|.|-.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~Mr~r----L~~kg~----~vl--~~~~w~~~~~~fDvIscLN--- 159 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL-FKEVYATEASPPMRWR----LSKKGF----TVL--DIDDWQQTDFKFDVISCLN--- 159 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh-cceEEeecCCHHHHHH----HHhCCC----eEE--ehhhhhccCCceEEEeehh---
Confidence 4578999999999999999987 7799999999 88543 444443 333 222232 236899999854
Q ss_pred hhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCcc----chhhhhhhhhccCCCCcchhHHHHHhcCCCCceEE
Q 014247 190 MLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPD----RYSESIDFWRNVYGIDMSAMMPLAKQCAFEEPSVE 265 (428)
Q Consensus 190 ~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~ 265 (428)
++..-..+..+|+.+++.|+|+|+++++..-.+..-++... .-.+........+.-..+.+.+.++.+||+...+.
T Consensus 160 vLDRc~~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~~E~~v~~l~~v~~p~GF~v~~~t 239 (265)
T PF05219_consen 160 VLDRCDRPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGATFEEQVSSLVNVFEPAGFEVERWT 239 (265)
T ss_pred hhhccCCHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 77777789999999999999999998765433221121111 11111111111111124556688899999876655
Q ss_pred eec
Q 014247 266 TIT 268 (428)
Q Consensus 266 ~~~ 268 (428)
..+
T Consensus 240 r~P 242 (265)
T PF05219_consen 240 RLP 242 (265)
T ss_pred ccC
Confidence 443
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.5e-09 Score=95.40 Aligned_cols=105 Identities=23% Similarity=0.265 Sum_probs=78.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc-----CCCceeEEEE
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE-----IDEEVDVIIS 184 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~-----~~~~~DlVvs 184 (428)
.++.+|||+-||||.+++.++.+|+++|+.||.+ ..+...+++++..+..+++.++..|+...- ...+||+|+.
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 5789999999999999999999999999999999 999999999999888888999999965421 2489999999
Q ss_pred ecchhhhcchhhHHHHHHHHh--cccccCeEEEccC
Q 014247 185 EWMGYMLLYESMLGSVITARD--RWLKRGGLILPSY 218 (428)
Q Consensus 185 ~~~~~~l~~~~~~~~~l~~~~--~~LkpgG~lv~~~ 218 (428)
++.. .. ......++..+. .+|+++|.+++..
T Consensus 121 DPPY-~~--~~~~~~~l~~l~~~~~l~~~~~ii~E~ 153 (183)
T PF03602_consen 121 DPPY-AK--GLYYEELLELLAENNLLNEDGLIIIEH 153 (183)
T ss_dssp --ST-TS--CHHHHHHHHHHHHTTSEEEEEEEEEEE
T ss_pred CCCc-cc--chHHHHHHHHHHHCCCCCCCEEEEEEe
Confidence 8732 11 111356666665 8999999999754
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=2e-09 Score=96.78 Aligned_cols=107 Identities=21% Similarity=0.374 Sum_probs=75.7
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCC----------------------------
Q 014247 110 FIEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNL---------------------------- 159 (428)
Q Consensus 110 ~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~---------------------------- 159 (428)
...++.+|||||.+|.++..+|+. |+..|.|+|++ ..+..|+++++...-
T Consensus 56 ~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~ 135 (288)
T KOG2899|consen 56 WFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADR 135 (288)
T ss_pred ccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccc
Confidence 467889999999999999999997 88899999999 899999987653210
Q ss_pred ------C-------CcEEEEEcccccccCCCceeEEEEecchh--hhc-chhhHHHHHHHHhcccccCeEEEcc
Q 014247 160 ------T-------DKVIVLHGRVEDVEIDEEVDVIISEWMGY--MLL-YESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 160 ------~-------~~v~~~~~d~~~l~~~~~~DlVvs~~~~~--~l~-~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
. .+..+...|+.++ ...+||+|+|-.+.- .|. +..-+..+++.+.++|.|||+||+.
T Consensus 136 a~t~~~p~n~~f~~~n~vle~~dfl~~-~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 136 AFTTDFPDNVWFQKENYVLESDDFLDM-IQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred cccccCCcchhcccccEEEecchhhhh-ccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 0 0111111222211 126899999943211 121 2344899999999999999999964
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.1e-09 Score=95.23 Aligned_cols=105 Identities=28% Similarity=0.371 Sum_probs=74.0
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeChHHHHHHHHHHHHCC--CCCcEEEEEccccccc-----CCCcee
Q 014247 109 SFIEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDASDIAVQANEVVKANN--LTDKVIVLHGRVEDVE-----IDEEVD 180 (428)
Q Consensus 109 ~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s~~~~~a~~~~~~~~--~~~~v~~~~~d~~~l~-----~~~~~D 180 (428)
...++++|||+|||+|..++.+++. +..+|+..|.++.+..++.+++.|+ ...++.+...|..+-. .+.+||
T Consensus 42 ~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 42 ELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp GGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred hhcCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence 3478899999999999999999998 7779999999988888899999887 5667888887764411 136899
Q ss_pred EEEEecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 181 VIISEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 181 lVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
+|++.- ++......+.+++.+.++|+++|.+++
T Consensus 122 ~IlasD---v~Y~~~~~~~L~~tl~~ll~~~~~vl~ 154 (173)
T PF10294_consen 122 VILASD---VLYDEELFEPLVRTLKRLLKPNGKVLL 154 (173)
T ss_dssp EEEEES-----S-GGGHHHHHHHHHHHBTT-TTEEE
T ss_pred EEEEec---ccchHHHHHHHHHHHHHHhCCCCEEEE
Confidence 999854 566677799999999999999998654
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.96 E-value=7.4e-09 Score=99.74 Aligned_cols=109 Identities=16% Similarity=0.114 Sum_probs=82.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHC--CC-CCcEEEEEccccccc--C-CCceeEE
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKAN--NL-TDKVIVLHGRVEDVE--I-DEEVDVI 182 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~--~~-~~~v~~~~~d~~~l~--~-~~~~DlV 182 (428)
.+.++||+||||.|.++..+++. +..+|+.+|++ .+++.|++.+... ++ .++++++.+|+...- . .++||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 45789999999999999999987 45699999999 8999999977542 23 358999999976542 1 3689999
Q ss_pred EEecchhhhc-chhhHHHHHHHHhcccccCeEEEccCC
Q 014247 183 ISEWMGYMLL-YESMLGSVITARDRWLKRGGLILPSYA 219 (428)
Q Consensus 183 vs~~~~~~l~-~~~~~~~~l~~~~~~LkpgG~lv~~~~ 219 (428)
++........ ....-.++++.+.+.|+|||+++....
T Consensus 170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~ 207 (308)
T PLN02366 170 IVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAE 207 (308)
T ss_pred EEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcC
Confidence 9965321111 111246789999999999999986543
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=98.96 E-value=6.6e-09 Score=105.64 Aligned_cols=114 Identities=21% Similarity=0.276 Sum_probs=86.1
Q ss_pred hHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc
Q 014247 96 RTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE 174 (428)
Q Consensus 96 r~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~ 174 (428)
..+.+.+.+.+.+...++.+|||+|||+|.+++.+++. +++|+|+|++ .+++.|++++..+++. +++++.+|+.+..
T Consensus 276 ~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~-~~~V~~vE~~~~av~~a~~n~~~~~~~-nv~~~~~d~~~~l 353 (431)
T TIGR00479 276 QNEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQ-AKSVVGIEVVPESVEKAQQNAELNGIA-NVEFLAGTLETVL 353 (431)
T ss_pred HHHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHh-CCEEEEEEcCHHHHHHHHHHHHHhCCC-ceEEEeCCHHHHH
Confidence 34445556666665567789999999999999999987 5599999999 9999999999999885 5999999987631
Q ss_pred ----C-CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 175 ----I-DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 175 ----~-~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
. ..+||+|+.++.-. .....+++.+.+ |+|++.++++
T Consensus 354 ~~~~~~~~~~D~vi~dPPr~-----G~~~~~l~~l~~-l~~~~ivyvs 395 (431)
T TIGR00479 354 PKQPWAGQIPDVLLLDPPRK-----GCAAEVLRTIIE-LKPERIVYVS 395 (431)
T ss_pred HHHHhcCCCCCEEEECcCCC-----CCCHHHHHHHHh-cCCCEEEEEc
Confidence 1 25799999876321 113455555544 7898877654
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=98.95 E-value=6.8e-09 Score=103.29 Aligned_cols=111 Identities=11% Similarity=0.092 Sum_probs=83.7
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC--
Q 014247 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI-- 175 (428)
Q Consensus 99 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~-- 175 (428)
.+.+.+...+...++.+|||+|||+|.+++.++..+ .+|+|+|++ .+++.|+++++.+++. +++++++|+.+...
T Consensus 220 ~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~~-~~~~~~~d~~~~~~~~ 297 (374)
T TIGR02085 220 QLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGLD-NLSFAALDSAKFATAQ 297 (374)
T ss_pred HHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHHHHhc
Confidence 333444444333466899999999999999999876 599999999 9999999999999885 69999999977532
Q ss_pred CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 176 DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 176 ~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
..+||+|+.++.-. +....+++.+.. ++|+++++++
T Consensus 298 ~~~~D~vi~DPPr~-----G~~~~~l~~l~~-~~p~~ivyvs 333 (374)
T TIGR02085 298 MSAPELVLVNPPRR-----GIGKELCDYLSQ-MAPKFILYSS 333 (374)
T ss_pred CCCCCEEEECCCCC-----CCcHHHHHHHHh-cCCCeEEEEE
Confidence 25699999987532 223455555543 7899888765
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.94 E-value=9.4e-09 Score=94.21 Aligned_cols=115 Identities=12% Similarity=0.055 Sum_probs=84.3
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHH------H-C----CCCCcEEEE
Q 014247 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVK------A-N----NLTDKVIVL 166 (428)
Q Consensus 99 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~------~-~----~~~~~v~~~ 166 (428)
.+.+.+... ...++.+||+.|||.|.-+..||+.|. +|+|+|+| ..++.+.+... . + --..+|+++
T Consensus 31 ~L~~~~~~l-~~~~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~ 108 (226)
T PRK13256 31 FLVKHFSKL-NINDSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIY 108 (226)
T ss_pred HHHHHHHhc-CCCCCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEE
Confidence 344444433 234678999999999999999999999 79999999 66666544210 0 0 012369999
Q ss_pred EcccccccC----CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 167 HGRVEDVEI----DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 167 ~~d~~~l~~----~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
++|+.+++. .++||+|+-......+ .........+.+.++|+|||.++.
T Consensus 109 ~gD~f~l~~~~~~~~~fD~VyDra~~~Al-pp~~R~~Y~~~l~~lL~pgg~lll 161 (226)
T PRK13256 109 VADIFNLPKIANNLPVFDIWYDRGAYIAL-PNDLRTNYAKMMLEVCSNNTQILL 161 (226)
T ss_pred EccCcCCCccccccCCcCeeeeehhHhcC-CHHHHHHHHHHHHHHhCCCcEEEE
Confidence 999999864 2689999876533333 556688999999999999998775
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.92 E-value=6.5e-09 Score=96.78 Aligned_cols=105 Identities=18% Similarity=0.126 Sum_probs=85.5
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC--------CCce
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQA-G-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI--------DEEV 179 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~--------~~~~ 179 (428)
.+.++||+||+++|.-++.+|+. + -.+|+++|.+ +.++.|++++...|+.++|+++.+++.+.-. .++|
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~f 157 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTF 157 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcc
Confidence 56789999999999999999986 2 3489999999 9999999999999999999999999876411 2689
Q ss_pred eEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCee
Q 014247 180 DVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATL 221 (428)
Q Consensus 180 DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 221 (428)
|+|+... ........+..+.++|+|||++++...-+
T Consensus 158 D~iFiDa------dK~~Y~~y~~~~l~ll~~GGviv~DNvl~ 193 (247)
T PLN02589 158 DFIFVDA------DKDNYINYHKRLIDLVKVGGVIGYDNTLW 193 (247)
T ss_pred cEEEecC------CHHHhHHHHHHHHHhcCCCeEEEEcCCCC
Confidence 9999754 23335666777788999999998765433
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.2e-08 Score=88.13 Aligned_cols=118 Identities=25% Similarity=0.256 Sum_probs=89.3
Q ss_pred HHHHHHhccCC--CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccc--c
Q 014247 100 YRAAIMQNQSF--IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDV--E 174 (428)
Q Consensus 100 ~~~~i~~~~~~--~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l--~ 174 (428)
.++++...+.. ..|.++||+=+|+|.+++.++.+|+.+++.||.+ ..+...+++++.-++..++.++..|+... .
T Consensus 29 VREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~ 108 (187)
T COG0742 29 VREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQ 108 (187)
T ss_pred HHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHh
Confidence 34444444432 7899999999999999999999999999999999 99999999999888888899999998854 2
Q ss_pred CC--CceeEEEEecchhhhcchhhHHHHHHH--HhcccccCeEEEccCC
Q 014247 175 ID--EEVDVIISEWMGYMLLYESMLGSVITA--RDRWLKRGGLILPSYA 219 (428)
Q Consensus 175 ~~--~~~DlVvs~~~~~~l~~~~~~~~~l~~--~~~~LkpgG~lv~~~~ 219 (428)
.. +.||+|+.++... ....+....+.. -..+|+|+|.+++...
T Consensus 109 ~~~~~~FDlVflDPPy~--~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 109 LGTREPFDLVFLDPPYA--KGLLDKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred cCCCCcccEEEeCCCCc--cchhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 22 3599999987432 111111233333 4688999999997654
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.3e-08 Score=96.81 Aligned_cols=108 Identities=13% Similarity=0.077 Sum_probs=79.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEeCh-HHHHHHHHHHHHCC--C-CCcEEEEEccccccc--CCCceeEEE
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAG-AKRVYAVDAS-DIAVQANEVVKANN--L-TDKVIVLHGRVEDVE--IDEEVDVII 183 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g-~~~V~giD~s-~~~~~a~~~~~~~~--~-~~~v~~~~~d~~~l~--~~~~~DlVv 183 (428)
..+++||+||||+|.++..+++.+ ..+|+++|++ .+++.|++.+...+ + ..+++++.+|..+.- .+++||+|+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 345699999999999998888874 6799999999 99999998765432 1 246888888876531 247899999
Q ss_pred Eecchhhhcc-hhhHHHHHHHHhcccccCeEEEccC
Q 014247 184 SEWMGYMLLY-ESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 184 s~~~~~~l~~-~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
++........ .....++++.+.++|+|||+++...
T Consensus 151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 151 VDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred EeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence 9753211111 1114678899999999999998753
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.4e-08 Score=88.91 Aligned_cols=121 Identities=26% Similarity=0.316 Sum_probs=87.8
Q ss_pred hHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCC-e---------EEEEeCh-HHHHHHHHHHHHCCCCCcEE
Q 014247 96 RTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAK-R---------VYAVDAS-DIAVQANEVVKANNLTDKVI 164 (428)
Q Consensus 96 r~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~-~---------V~giD~s-~~~~~a~~~~~~~~~~~~v~ 164 (428)
-...+..++.......++..|||--||+|.+...++..+.. . ++|+|++ .++..|++++...++...+.
T Consensus 12 L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~ 91 (179)
T PF01170_consen 12 LRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYID 91 (179)
T ss_dssp S-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEE
T ss_pred CCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceE
Confidence 34567778888887888999999999999999988876321 2 7899999 99999999999999988999
Q ss_pred EEEccccccc-CCCceeEEEEecc-hhhhcc----hhhHHHHHHHHhcccccCeEEEc
Q 014247 165 VLHGRVEDVE-IDEEVDVIISEWM-GYMLLY----ESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 165 ~~~~d~~~l~-~~~~~DlVvs~~~-~~~l~~----~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
+.+.|+.+++ ..+.+|+|++++. |.-+.. ......+++++.++|++...++.
T Consensus 92 ~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~ 149 (179)
T PF01170_consen 92 FIQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLT 149 (179)
T ss_dssp EEE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEE
T ss_pred EEecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEE
Confidence 9999999999 4589999999873 222221 22356678888999999555443
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.91 E-value=6.2e-09 Score=97.32 Aligned_cols=109 Identities=18% Similarity=0.283 Sum_probs=85.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCC-----CCCcEEEEEcccccc------cCC-C
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANN-----LTDKVIVLHGRVEDV------EID-E 177 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~-----~~~~v~~~~~d~~~l------~~~-~ 177 (428)
.++..+||+|||-|.-.+..-++|...++|+|++ -.++.|+++.+.-. ..-.+.|+.+|.... +.+ .
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp 195 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDP 195 (389)
T ss_pred ccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCC
Confidence 6788999999999999888889999999999999 78888888765321 112378999987542 223 3
Q ss_pred ceeEEEEec-chhhhcchhhHHHHHHHHhcccccCeEEEccCC
Q 014247 178 EVDVIISEW-MGYMLLYESMLGSVITARDRWLKRGGLILPSYA 219 (428)
Q Consensus 178 ~~DlVvs~~-~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 219 (428)
+||+|-|.. |.+.+..+.....+|..+.+.|+|||.+|-+.+
T Consensus 196 ~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiP 238 (389)
T KOG1975|consen 196 RFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIP 238 (389)
T ss_pred CcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecC
Confidence 499999965 556666677789999999999999999996544
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=98.89 E-value=1e-08 Score=92.41 Aligned_cols=108 Identities=30% Similarity=0.374 Sum_probs=77.4
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC
Q 014247 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID 176 (428)
Q Consensus 99 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~ 176 (428)
.-+..+.+. ..++.+|||+.||.|.+++.+|+. .++.|+|+|++ ..++.++++++.|++.+++.++++|..++...
T Consensus 90 ~Er~Ri~~~--v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~ 167 (200)
T PF02475_consen 90 TERRRIANL--VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPE 167 (200)
T ss_dssp HHHHHHHTC----TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---T
T ss_pred HHHHHHHhc--CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCc
Confidence 334555555 367899999999999999999983 45689999999 89999999999999999999999999998667
Q ss_pred CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEE
Q 014247 177 EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLIL 215 (428)
Q Consensus 177 ~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv 215 (428)
..+|.|+++.+.. ...+|..+..++++||.+-
T Consensus 168 ~~~drvim~lp~~-------~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 168 GKFDRVIMNLPES-------SLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp T-EEEEEE--TSS-------GGGGHHHHHHHEEEEEEEE
T ss_pred cccCEEEECChHH-------HHHHHHHHHHHhcCCcEEE
Confidence 8999999865322 2245666778899998763
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=8e-09 Score=107.05 Aligned_cols=108 Identities=19% Similarity=0.163 Sum_probs=80.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCC-CeEEEEeCh-HHHHHHHHH--HHH---CCC-CCcEEEEEccccccc--CCCcee
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGA-KRVYAVDAS-DIAVQANEV--VKA---NNL-TDKVIVLHGRVEDVE--IDEEVD 180 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~-~~V~giD~s-~~~~~a~~~--~~~---~~~-~~~v~~~~~d~~~l~--~~~~~D 180 (428)
.++++|||||||+|..+..+++.+. ++|+++|++ ++++.++++ +.. +.+ .++++++.+|..+.. .+++||
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 4568999999999999999998754 799999999 999999883 221 122 257999999988742 247999
Q ss_pred EEEEecchhhhc--chhhHHHHHHHHhcccccCeEEEccC
Q 014247 181 VIISEWMGYMLL--YESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 181 lVvs~~~~~~l~--~~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
+|+++....... ....-.++++.+.+.|+|||++++..
T Consensus 376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 999975321110 01123568889999999999998764
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.3e-09 Score=94.84 Aligned_cols=149 Identities=21% Similarity=0.271 Sum_probs=107.0
Q ss_pred HHHHHHHHhc--cCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCC-CCcEEEEEcccccc
Q 014247 98 ETYRAAIMQN--QSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNL-TDKVIVLHGRVEDV 173 (428)
Q Consensus 98 ~~~~~~i~~~--~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~-~~~v~~~~~d~~~l 173 (428)
.-|.+++.+. +...+|.+|||.+.|-|..+..++++|+.+|+.+|.+ ..++.|.-+-=..++ +..++++.+|+.++
T Consensus 118 dP~~Dt~~Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~ 197 (287)
T COG2521 118 DPLEDTLAKVELVKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEV 197 (287)
T ss_pred CcHHHHHhhhheeccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHH
Confidence 3445554443 3345799999999999999999999999999999999 777666432211111 23589999998876
Q ss_pred cC---CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhhccCCCCc-ch
Q 014247 174 EI---DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDM-SA 249 (428)
Q Consensus 174 ~~---~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 249 (428)
-. +++||+|+-.+.-+.+-.+..-.++.++++|+|+|||.++-...+ | . ....|.|+ ..
T Consensus 198 V~~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~----P---g----------~ryrG~d~~~g 260 (287)
T COG2521 198 VKDFDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGN----P---G----------KRYRGLDLPKG 260 (287)
T ss_pred HhcCCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCC----C---C----------cccccCChhHH
Confidence 32 378999999886666666777889999999999999999832211 1 1 11245563 45
Q ss_pred hHHHHHhcCCCCce
Q 014247 250 MMPLAKQCAFEEPS 263 (428)
Q Consensus 250 l~~~l~~~Gf~~~~ 263 (428)
+.+.|++.||..+.
T Consensus 261 Va~RLr~vGF~~v~ 274 (287)
T COG2521 261 VAERLRRVGFEVVK 274 (287)
T ss_pred HHHHHHhcCceeee
Confidence 67778999998654
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.4e-08 Score=97.37 Aligned_cols=86 Identities=21% Similarity=0.302 Sum_probs=72.0
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCC
Q 014247 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDE 177 (428)
Q Consensus 99 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~ 177 (428)
.+.+.|.+.....++.+|||||||+|.++..+++.+ .+|+|+|++ .++..+++++...+..++++++++|+.+.+. .
T Consensus 23 ~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~-~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~-~ 100 (294)
T PTZ00338 23 LVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLA-KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF-P 100 (294)
T ss_pred HHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhC-CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc-c
Confidence 344555666666788999999999999999999975 489999999 9999999998877755679999999988765 4
Q ss_pred ceeEEEEec
Q 014247 178 EVDVIISEW 186 (428)
Q Consensus 178 ~~DlVvs~~ 186 (428)
.||+|+++.
T Consensus 101 ~~d~VvaNl 109 (294)
T PTZ00338 101 YFDVCVANV 109 (294)
T ss_pred ccCEEEecC
Confidence 789999875
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.2e-08 Score=90.77 Aligned_cols=112 Identities=22% Similarity=0.294 Sum_probs=70.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeChHHHHHHHHHHHHCCCCCcEEEEEcccccccCC-CceeEEEEecchh
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDVEID-EEVDVIISEWMGY 189 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~-~~~DlVvs~~~~~ 189 (428)
.++.+|.|+|||.+.++..+.. +. +|...|+... + + .++.+|+.++|++ +.+|++|..+
T Consensus 71 ~~~~viaD~GCGdA~la~~~~~-~~-~V~SfDLva~----------n---~--~Vtacdia~vPL~~~svDv~VfcL--- 130 (219)
T PF05148_consen 71 PKSLVIADFGCGDAKLAKAVPN-KH-KVHSFDLVAP----------N---P--RVTACDIANVPLEDESVDVAVFCL--- 130 (219)
T ss_dssp -TTS-EEEES-TT-HHHHH--S-----EEEEESS-S----------S---T--TEEES-TTS-S--TT-EEEEEEES---
T ss_pred CCCEEEEECCCchHHHHHhccc-Cc-eEEEeeccCC----------C---C--CEEEecCccCcCCCCceeEEEEEh---
Confidence 4467999999999999865532 23 7999998621 1 2 4677999999987 8999999876
Q ss_pred hhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhhccCCCCcchhHHHHHhcCCCCceE
Q 014247 190 MLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAMMPLAKQCAFEEPSV 264 (428)
Q Consensus 190 ~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~ 264 (428)
.|.+.. ...++.++.|+|||||.|.+...... + -+...+...+++.||+....
T Consensus 131 SLMGTn-~~~fi~EA~RvLK~~G~L~IAEV~SR----------------f-----~~~~~F~~~~~~~GF~~~~~ 183 (219)
T PF05148_consen 131 SLMGTN-WPDFIREANRVLKPGGILKIAEVKSR----------------F-----ENVKQFIKALKKLGFKLKSK 183 (219)
T ss_dssp ---SS--HHHHHHHHHHHEEEEEEEEEEEEGGG----------------------S-HHHHHHHHHCTTEEEEEE
T ss_pred hhhCCC-cHHHHHHHHheeccCcEEEEEEeccc----------------C-----cCHHHHHHHHHHCCCeEEec
Confidence 444444 88899999999999999987432111 0 15677888889999986553
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.5e-08 Score=89.99 Aligned_cols=99 Identities=22% Similarity=0.256 Sum_probs=73.5
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccc-ccCC-CceeEEEEecch
Q 014247 112 EGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVED-VEID-EEVDVIISEWMG 188 (428)
Q Consensus 112 ~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~-l~~~-~~~DlVvs~~~~ 188 (428)
.+.-|||||||+|..+..+...|. .++|+|+| .|++.|.+.- ++ -.++.+|+-. +++. +.||-+|+-..-
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh-~wiGvDiSpsML~~a~~~e----~e--gdlil~DMG~GlpfrpGtFDg~ISISAv 122 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGH-QWIGVDISPSMLEQAVERE----LE--GDLILCDMGEGLPFRPGTFDGVISISAV 122 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCc-eEEeecCCHHHHHHHHHhh----hh--cCeeeeecCCCCCCCCCccceEEEeeee
Confidence 467899999999999999998885 89999999 9999998632 11 2467777754 5664 999998883311
Q ss_pred hhhcc--------hhhHHHHHHHHhcccccCeEEEcc
Q 014247 189 YMLLY--------ESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 189 ~~l~~--------~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
..+.+ ..-+..++..++.+|++|++.++.
T Consensus 123 QWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Q 159 (270)
T KOG1541|consen 123 QWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQ 159 (270)
T ss_pred eeecccCccccChHHHHHHHhhhhhhhhccCceeEEE
Confidence 12222 123567788899999999998864
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.5e-08 Score=95.53 Aligned_cols=119 Identities=23% Similarity=0.296 Sum_probs=97.5
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEc-cccccc
Q 014247 97 TETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHG-RVEDVE 174 (428)
Q Consensus 97 ~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~-d~~~l~ 174 (428)
...+.+++..+....+|..|||-=||||.+...+.-.|+ +|+|+|++ .|+.-|+.|++..++.+ ..+... |+++++
T Consensus 182 ~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i~~-~~~~~~~Da~~lp 259 (347)
T COG1041 182 DPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGIED-YPVLKVLDATNLP 259 (347)
T ss_pred CHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhhhhhhhhhhCcCc-eeEEEecccccCC
Confidence 346677788877889999999999999999999999998 89999999 99999999999998776 555555 999999
Q ss_pred CCC-ceeEEEEecc-hhhh--c---chhhHHHHHHHHhcccccCeEEEcc
Q 014247 175 IDE-EVDVIISEWM-GYML--L---YESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 175 ~~~-~~DlVvs~~~-~~~l--~---~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
+++ ++|.|++++. |-.. . -......+++.+.++|++||.+++.
T Consensus 260 l~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~ 309 (347)
T COG1041 260 LRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFA 309 (347)
T ss_pred CCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEe
Confidence 985 4999999872 1111 1 1244788899999999999998863
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.2e-08 Score=94.69 Aligned_cols=84 Identities=23% Similarity=0.339 Sum_probs=68.9
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCC
Q 014247 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDE 177 (428)
Q Consensus 99 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~ 177 (428)
.+.+.|.+.+...++.+|||||||+|.++..+++.+ .+|+|+|++ .+++.+++++.. ..+++++++|+.+++++
T Consensus 16 ~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~-~~v~~vEid~~~~~~l~~~~~~---~~~v~ii~~D~~~~~~~- 90 (258)
T PRK14896 16 RVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRA-KKVYAIELDPRLAEFLRDDEIA---AGNVEIIEGDALKVDLP- 90 (258)
T ss_pred HHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHhcc---CCCEEEEEeccccCCch-
Confidence 345555666666788999999999999999999985 489999999 999999887644 24699999999987764
Q ss_pred ceeEEEEecc
Q 014247 178 EVDVIISEWM 187 (428)
Q Consensus 178 ~~DlVvs~~~ 187 (428)
.||.|++++.
T Consensus 91 ~~d~Vv~NlP 100 (258)
T PRK14896 91 EFNKVVSNLP 100 (258)
T ss_pred hceEEEEcCC
Confidence 5899999863
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=9.8e-08 Score=92.13 Aligned_cols=76 Identities=16% Similarity=0.182 Sum_probs=59.6
Q ss_pred CCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHC-CCCCcEEEEE-ccccccc-----CCCceeEE
Q 014247 112 EGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKAN-NLTDKVIVLH-GRVEDVE-----IDEEVDVI 182 (428)
Q Consensus 112 ~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~-~~~~~v~~~~-~d~~~l~-----~~~~~DlV 182 (428)
++.+|||||||+|.+...++.. ...+++|+|++ ..++.|++++..| ++.++|+++. .+..++. ..++||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 4679999999999776666554 33489999999 9999999999999 7998898864 3433321 23689999
Q ss_pred EEecc
Q 014247 183 ISEWM 187 (428)
Q Consensus 183 vs~~~ 187 (428)
+|++.
T Consensus 194 vcNPP 198 (321)
T PRK11727 194 LCNPP 198 (321)
T ss_pred EeCCC
Confidence 99984
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.9e-07 Score=86.93 Aligned_cols=157 Identities=15% Similarity=0.124 Sum_probs=109.0
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-C--CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc--
Q 014247 101 RAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-G--AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE-- 174 (428)
Q Consensus 101 ~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g--~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~-- 174 (428)
.++|..+......-+||||.||.|...+.+... + ..+|...|.| ..++..++.++++|+.+.++|.++|+.+..
T Consensus 124 ~~ai~~L~~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l 203 (311)
T PF12147_consen 124 RQAIARLREQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSL 203 (311)
T ss_pred HHHHHHHHhcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHh
Confidence 334444333346679999999999988777665 2 3589999999 889999999999999998899999987742
Q ss_pred --CCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhhccCC-------C
Q 014247 175 --IDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYG-------I 245 (428)
Q Consensus 175 --~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~ 245 (428)
+..+.++++...+...+.....+...+..+.+.|.|||.+|.+...++- ++-......-++..| -
T Consensus 204 ~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHP------Qle~IAr~LtsHr~g~~WvMRrR 277 (311)
T PF12147_consen 204 AALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHP------QLEMIARVLTSHRDGKAWVMRRR 277 (311)
T ss_pred hccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCc------chHHHHHHHhcccCCCceEEEec
Confidence 2356799888765444444455777899999999999999976543321 110000011111111 2
Q ss_pred CcchhHHHHHhcCCCCce
Q 014247 246 DMSAMMPLAKQCAFEEPS 263 (428)
Q Consensus 246 ~~~~l~~~l~~~Gf~~~~ 263 (428)
+..++.++.+++||+...
T Consensus 278 sq~EmD~Lv~~aGF~K~~ 295 (311)
T PF12147_consen 278 SQAEMDQLVEAAGFEKID 295 (311)
T ss_pred CHHHHHHHHHHcCCchhh
Confidence 456789999999998643
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.1e-08 Score=95.53 Aligned_cols=82 Identities=22% Similarity=0.307 Sum_probs=66.8
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCc
Q 014247 100 YRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEE 178 (428)
Q Consensus 100 ~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~ 178 (428)
..+.+.+.+...++.+|||||||+|.++..+++.+. +|+|+|++ .|++.+++++.. .+++++++|+.+++++.-
T Consensus 30 i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~~~~~~~~~ 104 (272)
T PRK00274 30 ILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAE----DNLTIIEGDALKVDLSEL 104 (272)
T ss_pred HHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhcc----CceEEEEChhhcCCHHHc
Confidence 344555566667889999999999999999999866 99999999 999998876532 469999999998876532
Q ss_pred -eeEEEEec
Q 014247 179 -VDVIISEW 186 (428)
Q Consensus 179 -~DlVvs~~ 186 (428)
+|+|++++
T Consensus 105 ~~~~vv~Nl 113 (272)
T PRK00274 105 QPLKVVANL 113 (272)
T ss_pred CcceEEEeC
Confidence 58999886
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.9e-08 Score=98.55 Aligned_cols=97 Identities=22% Similarity=0.264 Sum_probs=80.3
Q ss_pred CCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC-CCceeEEEEecchh
Q 014247 113 GKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI-DEEVDVIISEWMGY 189 (428)
Q Consensus 113 ~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~-~~~~DlVvs~~~~~ 189 (428)
+.+|||++||+|.+++.++.. ++.+|+++|++ ..++.++++++.|++.+ ++++++|+..+.. ..+||+|+.+++
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~-~~v~~~Da~~~l~~~~~fD~V~lDP~-- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLEN-EKVFNKDANALLHEERKFDVVDIDPF-- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-eEEEhhhHHHHHhhcCCCCEEEECCC--
Confidence 468999999999999999875 66699999999 99999999999999865 7899999877533 467999998873
Q ss_pred hhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 190 MLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 190 ~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
.....++....+.+++||++.++
T Consensus 135 -----Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 135 -----GSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred -----CCcHHHHHHHHHHhcCCCEEEEE
Confidence 22455667766678999999987
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.9e-08 Score=88.10 Aligned_cols=104 Identities=18% Similarity=0.224 Sum_probs=77.3
Q ss_pred CEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccc----cCCCceeEEEEecc
Q 014247 114 KVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDV----EIDEEVDVIISEWM 187 (428)
Q Consensus 114 ~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l----~~~~~~DlVvs~~~ 187 (428)
..+||||||.|.+...+|+. .-..++|+|+. ..+..|.+++...++.+ +.++++|+..+ ..++++|-|.....
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~N-v~~~~~da~~~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKN-VRFLRGDARELLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSS-EEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccc-eEEEEccHHHHHhhcccCCchheEEEeCC
Confidence 38999999999999999887 45589999999 88888888888888865 99999998773 23489999997542
Q ss_pred hhhhcc-----hhhHHHHHHHHhcccccCeEEEccC
Q 014247 188 GYMLLY-----ESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 188 ~~~l~~-----~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
.-..-. --.-+.++..+.++|+|||.+.+.+
T Consensus 98 DPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 98 DPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp ----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 211110 0124788999999999999987643
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.76 E-value=1e-07 Score=89.26 Aligned_cols=106 Identities=26% Similarity=0.271 Sum_probs=81.3
Q ss_pred HHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeChHHHHHHHHHHHHCCCCCcEEEEEcccccccCCCcee
Q 014247 102 AAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVD 180 (428)
Q Consensus 102 ~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~D 180 (428)
..+.......+..+|||||+|+|.++..++++ ..-+++..|.-.+++.+++ .++|+++.+|+. -+.+. +|
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~-------~~rv~~~~gd~f-~~~P~-~D 160 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKE-------ADRVEFVPGDFF-DPLPV-AD 160 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHH-------TTTEEEEES-TT-TCCSS-ES
T ss_pred hhhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhcccc-------ccccccccccHH-hhhcc-cc
Confidence 34455555566789999999999999999987 3348999999988877776 568999999998 45566 99
Q ss_pred EEEEecchhhhcch--hhHHHHHHHHhcccccC--eEEEccCC
Q 014247 181 VIISEWMGYMLLYE--SMLGSVITARDRWLKRG--GLILPSYA 219 (428)
Q Consensus 181 lVvs~~~~~~l~~~--~~~~~~l~~~~~~Lkpg--G~lv~~~~ 219 (428)
+++... +++.. .+...+|+++++.|+|| |+|++...
T Consensus 161 ~~~l~~---vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 161 VYLLRH---VLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp EEEEES---SGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred ceeeeh---hhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEee
Confidence 999766 44443 44778899999999999 99987653
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=98.76 E-value=5.7e-08 Score=87.28 Aligned_cols=145 Identities=17% Similarity=0.116 Sum_probs=91.2
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC-CceeEEEEecchh
Q 014247 112 EGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID-EEVDVIISEWMGY 189 (428)
Q Consensus 112 ~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~-~~~DlVvs~~~~~ 189 (428)
...++||.|||.|+.+..+...-+++|-.+|+. .+++.|++.+... .....++.+..++++.++ .+||+|.+.|...
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~-~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lg 133 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKD-NPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLG 133 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCG-GCCEEEEEES-GGG----TT-EEEEEEES-GG
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhccc-CCCcceEEecCHhhccCCCCcEeEEEehHhhc
Confidence 346999999999999987655558899999999 9999998765431 223478888889988765 7999999999432
Q ss_pred hhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhhccCCCCcchhHHHHHhcCCCCceEEe
Q 014247 190 MLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAMMPLAKQCAFEEPSVET 266 (428)
Q Consensus 190 ~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~ 266 (428)
.| ...++-.+|+++...|+|+|.+++-.... ......+++. ++.---+...+.++++++|+..+..+.
T Consensus 134 hL-TD~dlv~fL~RCk~~L~~~G~IvvKEN~~----~~~~~~~D~~----DsSvTRs~~~~~~lF~~AGl~~v~~~~ 201 (218)
T PF05891_consen 134 HL-TDEDLVAFLKRCKQALKPNGVIVVKENVS----SSGFDEFDEE----DSSVTRSDEHFRELFKQAGLRLVKEEK 201 (218)
T ss_dssp GS--HHHHHHHHHHHHHHEEEEEEEEEEEEEE----SSSEEEEETT----TTEEEEEHHHHHHHHHHCT-EEEEEEE
T ss_pred cC-CHHHHHHHHHHHHHhCcCCcEEEEEecCC----CCCCcccCCc----cCeeecCHHHHHHHHHHcCCEEEEecc
Confidence 22 34568999999999999999998754321 1111111110 000001235688999999998765443
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.2e-08 Score=89.09 Aligned_cols=111 Identities=22% Similarity=0.322 Sum_probs=81.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeChHHHHHHHHHHHHCCCCCcEEEEEcccccccCC-CceeEEEEecchh
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDVEID-EEVDVIISEWMGY 189 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~-~~~DlVvs~~~~~ 189 (428)
....+|.|+|||-+.++. .. ..+|+.+|+-.. +-.++.+|+.++|++ +++|++|.++
T Consensus 179 ~~~~vIaD~GCGEakiA~---~~-~~kV~SfDL~a~---------------~~~V~~cDm~~vPl~d~svDvaV~CL--- 236 (325)
T KOG3045|consen 179 PKNIVIADFGCGEAKIAS---SE-RHKVHSFDLVAV---------------NERVIACDMRNVPLEDESVDVAVFCL--- 236 (325)
T ss_pred cCceEEEecccchhhhhh---cc-ccceeeeeeecC---------------CCceeeccccCCcCccCcccEEEeeH---
Confidence 345689999999998865 22 348999997521 246788999999986 9999999865
Q ss_pred hhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhhccCCCCcchhHHHHHhcCCCCceEE
Q 014247 190 MLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAMMPLAKQCAFEEPSVE 265 (428)
Q Consensus 190 ~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~ 265 (428)
.|... ++..++.+++|+|++||.+.+...... .-|...+...+..+||+.....
T Consensus 237 SLMgt-n~~df~kEa~RiLk~gG~l~IAEv~SR---------------------f~dv~~f~r~l~~lGF~~~~~d 290 (325)
T KOG3045|consen 237 SLMGT-NLADFIKEANRILKPGGLLYIAEVKSR---------------------FSDVKGFVRALTKLGFDVKHKD 290 (325)
T ss_pred hhhcc-cHHHHHHHHHHHhccCceEEEEehhhh---------------------cccHHHHHHHHHHcCCeeeehh
Confidence 44444 488999999999999999986543211 1245557788889999875533
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.3e-08 Score=91.02 Aligned_cols=99 Identities=24% Similarity=0.340 Sum_probs=63.1
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEE-EEEcccc-----
Q 014247 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVI-VLHGRVE----- 171 (428)
Q Consensus 99 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~-~~~~d~~----- 171 (428)
.+..++...-...++++|||+|||+|.++..+++.|+++|+|+|++ .|+... ++.+ .++. +...+++
T Consensus 62 kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~---l~~~---~~v~~~~~~ni~~~~~~ 135 (228)
T TIGR00478 62 KLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEK---LRQD---ERVKVLERTNIRYVTPA 135 (228)
T ss_pred HHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHH---HhcC---CCeeEeecCCcccCCHh
Confidence 3444554443346888999999999999999999999999999999 677551 1221 1121 2222333
Q ss_pred cccCC-CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEE
Q 014247 172 DVEID-EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLIL 215 (428)
Q Consensus 172 ~l~~~-~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv 215 (428)
++..+ ..+|++++.. ..++..+..+|+| |.++
T Consensus 136 ~~~~d~~~~DvsfiS~-----------~~~l~~i~~~l~~-~~~~ 168 (228)
T TIGR00478 136 DIFPDFATFDVSFISL-----------ISILPELDLLLNP-NDLT 168 (228)
T ss_pred HcCCCceeeeEEEeeh-----------HhHHHHHHHHhCc-CeEE
Confidence 22211 4677766532 2246677788888 7555
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.2e-07 Score=87.09 Aligned_cols=142 Identities=18% Similarity=0.163 Sum_probs=98.5
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHH----C-----------------------------
Q 014247 112 EGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKA----N----------------------------- 157 (428)
Q Consensus 112 ~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~----~----------------------------- 157 (428)
...+||--|||.|+++..+|+.|+ .|.|.|.| -|+-...-.+.. +
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv 134 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDV 134 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCc
Confidence 357999999999999999999999 89999999 886554443321 1
Q ss_pred ------CCCCcEEEEEcccccccCC----CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecC
Q 014247 158 ------NLTDKVIVLHGRVEDVEID----EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVT 227 (428)
Q Consensus 158 ------~~~~~v~~~~~d~~~l~~~----~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~ 227 (428)
....++....||+.++-.+ ++||+|++.. ++.-..++-+.++.+.++|||||..|=-.+-.|-..-.
T Consensus 135 ~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~F---FIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~ 211 (270)
T PF07942_consen 135 DPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCF---FIDTAENIIEYIETIEHLLKPGGYWINFGPLLYHFEPM 211 (270)
T ss_pred CcccccCCCCceeEecCccEEecCCcccCCcccEEEEEE---EeechHHHHHHHHHHHHHhccCCEEEecCCccccCCCC
Confidence 1123467777777765433 5999999865 67777778999999999999999776433322211100
Q ss_pred CccchhhhhhhhhccCCCCcchhHHHHHhcCCCCceEE
Q 014247 228 HPDRYSESIDFWRNVYGIDMSAMMPLAKQCAFEEPSVE 265 (428)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~ 265 (428)
. . . -...--++.+++..++++.||+...-+
T Consensus 212 ~--~-~-----~~~sveLs~eEi~~l~~~~GF~~~~~~ 241 (270)
T PF07942_consen 212 S--I-P-----NEMSVELSLEEIKELIEKLGFEIEKEE 241 (270)
T ss_pred C--C-C-----CCcccCCCHHHHHHHHHHCCCEEEEEE
Confidence 0 0 0 000134567889999999999876544
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.72 E-value=9.5e-09 Score=91.56 Aligned_cols=99 Identities=22% Similarity=0.353 Sum_probs=84.3
Q ss_pred CCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC-CceeEEEEecchhh
Q 014247 113 GKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID-EEVDVIISEWMGYM 190 (428)
Q Consensus 113 ~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~-~~~DlVvs~~~~~~ 190 (428)
...++|||||-|.++..+...+..+++-+|.| .|++.++.. +.+++ .+....+|-+.+++. .++|+|++.. .
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~-qdp~i--~~~~~v~DEE~Ldf~ens~DLiisSl---s 146 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDA-QDPSI--ETSYFVGDEEFLDFKENSVDLIISSL---S 146 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhcc-CCCce--EEEEEecchhcccccccchhhhhhhh---h
Confidence 46799999999999999999999999999999 999887653 33444 367777888888875 8999999977 8
Q ss_pred hcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 191 LLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 191 l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
++|..+++..+.++...|||+|.++-+
T Consensus 147 lHW~NdLPg~m~~ck~~lKPDg~Fias 173 (325)
T KOG2940|consen 147 LHWTNDLPGSMIQCKLALKPDGLFIAS 173 (325)
T ss_pred hhhhccCchHHHHHHHhcCCCccchhH
Confidence 889999999999999999999998743
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.4e-07 Score=77.43 Aligned_cols=76 Identities=16% Similarity=0.213 Sum_probs=61.2
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcH-HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC-
Q 014247 100 YRAAIMQNQSFIEGKVVVDVGCGTGI-LSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID- 176 (428)
Q Consensus 100 ~~~~i~~~~~~~~~~~VLDiGcGtG~-ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~- 176 (428)
+.+.|.+.+...++.+|||||||+|. ++..+++.|. .|+|+|++ ..++.++++ .+.++.+|+.+-.+.
T Consensus 4 i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~--------~~~~v~dDlf~p~~~~ 74 (134)
T PRK04148 4 IAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAVEKAKKL--------GLNAFVDDLFNPNLEI 74 (134)
T ss_pred HHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHh--------CCeEEECcCCCCCHHH
Confidence 45556666655667899999999996 9999999887 99999999 766666544 378899999876654
Q ss_pred -CceeEEEE
Q 014247 177 -EEVDVIIS 184 (428)
Q Consensus 177 -~~~DlVvs 184 (428)
+.+|+|.+
T Consensus 75 y~~a~liys 83 (134)
T PRK04148 75 YKNAKLIYS 83 (134)
T ss_pred HhcCCEEEE
Confidence 88999998
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.2e-07 Score=93.62 Aligned_cols=109 Identities=16% Similarity=0.118 Sum_probs=79.2
Q ss_pred HHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC
Q 014247 98 ETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID 176 (428)
Q Consensus 98 ~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~ 176 (428)
+.+.+.+.+.+.. .+.+|||++||+|.+++.+++. +++|+|+|.+ ++++.|++++..+++.+ ++++.+|+.++...
T Consensus 184 ~~l~~~v~~~~~~-~~~~vlDl~~G~G~~sl~la~~-~~~v~~vE~~~~av~~a~~n~~~~~~~~-v~~~~~d~~~~~~~ 260 (353)
T TIGR02143 184 IKMLEWACEVTQG-SKGDLLELYCGNGNFSLALAQN-FRRVLATEIAKPSVNAAQYNIAANNIDN-VQIIRMSAEEFTQA 260 (353)
T ss_pred HHHHHHHHHHhhc-CCCcEEEEeccccHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCc-EEEEEcCHHHHHHH
Confidence 3444455554432 2347999999999999988886 5699999999 99999999999999864 99999998774210
Q ss_pred -----------------CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 177 -----------------EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 177 -----------------~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
.+||+|+.++.-. +..+.+++.+.+ |+++++++
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~-----G~~~~~l~~l~~---~~~ivYvs 310 (353)
T TIGR02143 261 MNGVREFRRLKGIDLKSYNCSTIFVDPPRA-----GLDPDTCKLVQA---YERILYIS 310 (353)
T ss_pred HhhccccccccccccccCCCCEEEECCCCC-----CCcHHHHHHHHc---CCcEEEEE
Confidence 1379999987432 223455555543 67777754
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.68 E-value=6.2e-08 Score=87.19 Aligned_cols=128 Identities=19% Similarity=0.192 Sum_probs=76.6
Q ss_pred ccChhhHHHHHHHHHh-ccC---CCCCCEEEEEcCCCcH----HHHHHHHc---CCC---eEEEEeCh-HHHHHHHHHH-
Q 014247 91 IKDRVRTETYRAAIMQ-NQS---FIEGKVVVDVGCGTGI----LSIFCAQA---GAK---RVYAVDAS-DIAVQANEVV- 154 (428)
Q Consensus 91 ~~d~~r~~~~~~~i~~-~~~---~~~~~~VLDiGcGtG~----ls~~la~~---g~~---~V~giD~s-~~~~~a~~~~- 154 (428)
++|....+.+.+.+.. .+. ..+..+|+.+||++|- +++.+.+. ... +|+|+|+| .+++.|++-.
T Consensus 6 FRd~~~f~~l~~~vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y 85 (196)
T PF01739_consen 6 FRDPEQFEALRDEVLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIY 85 (196)
T ss_dssp TTTTTHHHHHHHHHH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEE
T ss_pred cCCHHHHHHHHHHHHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCC
Confidence 3444445566666662 321 1245699999999994 56666662 122 89999999 8998886521
Q ss_pred -------------HHC-------------CCCCcEEEEEccccc-ccCCCceeEEEEecchhhhcchhhHHHHHHHHhcc
Q 014247 155 -------------KAN-------------NLTDKVIVLHGRVED-VEIDEEVDVIISEWMGYMLLYESMLGSVITARDRW 207 (428)
Q Consensus 155 -------------~~~-------------~~~~~v~~~~~d~~~-l~~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~ 207 (428)
.+. .+..+|+|.+.|+.+ .+..+.||+|+|..+.- .........+++.+.+.
T Consensus 86 ~~~~~~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlI-YF~~~~~~~vl~~l~~~ 164 (196)
T PF01739_consen 86 PERSLRGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLI-YFDPETQQRVLRRLHRS 164 (196)
T ss_dssp EGGGGTTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGG-GS-HHHHHHHHHHHGGG
T ss_pred CHHHHhhhHHHHHHHhccccCCCceeEChHHcCceEEEecccCCCCcccCCccEEEecCEEE-EeCHHHHHHHHHHHHHH
Confidence 000 122569999999888 44458999999977543 33455578999999999
Q ss_pred cccCeEEEccCC
Q 014247 208 LKRGGLILPSYA 219 (428)
Q Consensus 208 LkpgG~lv~~~~ 219 (428)
|+|||.|++...
T Consensus 165 L~pgG~L~lG~s 176 (196)
T PF01739_consen 165 LKPGGYLFLGHS 176 (196)
T ss_dssp EEEEEEEEE-TT
T ss_pred cCCCCEEEEecC
Confidence 999999998754
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.4e-07 Score=94.88 Aligned_cols=117 Identities=21% Similarity=0.273 Sum_probs=94.4
Q ss_pred ChhhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccc
Q 014247 93 DRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVE 171 (428)
Q Consensus 93 d~~r~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~ 171 (428)
+...++.+.+.+.+.+...++.+|||+=||.|.+++.+|+. .++|+|+|++ ++++.|+++++.|++.+ ++|+.++++
T Consensus 274 N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~-~~~V~gvEi~~~aV~~A~~NA~~n~i~N-~~f~~~~ae 351 (432)
T COG2265 274 NPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR-VKKVHGVEISPEAVEAAQENAAANGIDN-VEFIAGDAE 351 (432)
T ss_pred CHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc-CCEEEEEecCHHHHHHHHHHHHHcCCCc-EEEEeCCHH
Confidence 34556677777777777778899999999999999999986 6699999999 99999999999999987 999999999
Q ss_pred cccCC----CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 172 DVEID----EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 172 ~l~~~----~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
++... ..+|+|+.++.-..+ -+.+++.+.+ ++|-.+++++
T Consensus 352 ~~~~~~~~~~~~d~VvvDPPR~G~-----~~~~lk~l~~-~~p~~IvYVS 395 (432)
T COG2265 352 EFTPAWWEGYKPDVVVVDPPRAGA-----DREVLKQLAK-LKPKRIVYVS 395 (432)
T ss_pred HHhhhccccCCCCEEEECCCCCCC-----CHHHHHHHHh-cCCCcEEEEe
Confidence 87543 478999998743333 3456666654 6777777764
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.67 E-value=2e-07 Score=92.45 Aligned_cols=110 Identities=15% Similarity=0.180 Sum_probs=79.7
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc-
Q 014247 97 TETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE- 174 (428)
Q Consensus 97 ~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~- 174 (428)
.+.+.+.+.+.+.. .+.+|||++||+|.+++.+++. +++|+|+|.+ .+++.|++++..+++. +++++.+|+.+.-
T Consensus 192 ~e~l~~~v~~~~~~-~~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~~-~v~~~~~d~~~~l~ 268 (362)
T PRK05031 192 NEKMLEWALDATKG-SKGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGID-NVQIIRMSAEEFTQ 268 (362)
T ss_pred HHHHHHHHHHHhhc-CCCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEECCHHHHHH
Confidence 34555555554432 2357999999999999988886 6799999999 9999999999999986 5999999987631
Q ss_pred -C---------------CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 175 -I---------------DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 175 -~---------------~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
+ ..+||+|+.++.- ....+.+++.+.+ |+++++++
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR-----~G~~~~~l~~l~~---~~~ivyvS 319 (362)
T PRK05031 269 AMNGVREFNRLKGIDLKSYNFSTIFVDPPR-----AGLDDETLKLVQA---YERILYIS 319 (362)
T ss_pred HHhhcccccccccccccCCCCCEEEECCCC-----CCCcHHHHHHHHc---cCCEEEEE
Confidence 1 1258999998753 2223455555543 66766654
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.4e-07 Score=86.38 Aligned_cols=82 Identities=20% Similarity=0.367 Sum_probs=66.0
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCc
Q 014247 100 YRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEE 178 (428)
Q Consensus 100 ~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~ 178 (428)
..+.+.+.+...++.+|||||||+|.++..+++.+. +|+++|++ .++..++++... ..+++++++|+.+++.+ .
T Consensus 17 i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~D~~~~~~~-~ 91 (253)
T TIGR00755 17 VIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSL---YERLEVIEGDALKVDLP-D 91 (253)
T ss_pred HHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCc---CCcEEEEECchhcCChh-H
Confidence 344555556667889999999999999999999865 79999999 999888876533 34699999999887764 5
Q ss_pred ee---EEEEec
Q 014247 179 VD---VIISEW 186 (428)
Q Consensus 179 ~D---lVvs~~ 186 (428)
+| +|+++.
T Consensus 92 ~d~~~~vvsNl 102 (253)
T TIGR00755 92 FPKQLKVVSNL 102 (253)
T ss_pred cCCcceEEEcC
Confidence 66 888875
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.9e-07 Score=89.71 Aligned_cols=107 Identities=18% Similarity=0.220 Sum_probs=80.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCC--C-CCcEEEEEcccccccC--CCceeEEE
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANN--L-TDKVIVLHGRVEDVEI--DEEVDVII 183 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~--~-~~~v~~~~~d~~~l~~--~~~~DlVv 183 (428)
...++||.||+|.|.++..+.+. +..+|+.||++ .+++.|++.+..++ + ..+++++.+|..+.-. .++||+|+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 35679999999999999988886 56799999999 99999998875432 2 4689999999877522 37899999
Q ss_pred Eecchhh---hcchhhHHHHHH-HHhcccccCeEEEcc
Q 014247 184 SEWMGYM---LLYESMLGSVIT-ARDRWLKRGGLILPS 217 (428)
Q Consensus 184 s~~~~~~---l~~~~~~~~~l~-~~~~~LkpgG~lv~~ 217 (428)
++..... ....-.-.++++ .+.+.|+|||+++..
T Consensus 182 ~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 182 GDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred ecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 9742211 001111346777 789999999998854
|
|
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.8e-07 Score=84.59 Aligned_cols=86 Identities=26% Similarity=0.382 Sum_probs=75.1
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCC
Q 014247 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDE 177 (428)
Q Consensus 99 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~ 177 (428)
...+.|.......++..||+||.|||.++..+.++|+ +|+|+|++ .|+....++.+....+++.+++++|+...+++
T Consensus 45 ~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P- 122 (315)
T KOG0820|consen 45 LVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP- 122 (315)
T ss_pred HHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc-
Confidence 4556677777789999999999999999999999955 89999999 99999999887777778999999999887764
Q ss_pred ceeEEEEec
Q 014247 178 EVDVIISEW 186 (428)
Q Consensus 178 ~~DlVvs~~ 186 (428)
.||++|++.
T Consensus 123 ~fd~cVsNl 131 (315)
T KOG0820|consen 123 RFDGCVSNL 131 (315)
T ss_pred ccceeeccC
Confidence 799999965
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=98.57 E-value=6.1e-07 Score=91.20 Aligned_cols=112 Identities=17% Similarity=0.100 Sum_probs=86.9
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHc--CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc--CCCceeEEE
Q 014247 109 SFIEGKVVVDVGCGTGILSIFCAQA--GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE--IDEEVDVII 183 (428)
Q Consensus 109 ~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~--~~~~~DlVv 183 (428)
...+|.+|||++||.|.-+..+|.. +...|+++|++ .-+..+++++++.|+.+ +.+.+.|...+. +++.||.|+
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~n-v~v~~~D~~~~~~~~~~~fD~IL 188 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSN-VALTHFDGRVFGAALPETFDAIL 188 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEeCchhhhhhhchhhcCeEE
Confidence 4578999999999999999888886 23589999999 88999999999999865 889999987653 347899999
Q ss_pred Eecchhh---hcchh----------------hHHHHHHHHhcccccCeEEEccCCee
Q 014247 184 SEWMGYM---LLYES----------------MLGSVITARDRWLKRGGLILPSYATL 221 (428)
Q Consensus 184 s~~~~~~---l~~~~----------------~~~~~l~~~~~~LkpgG~lv~~~~~~ 221 (428)
.+...+. +...+ .-..+|..+.++|||||+|+-+++++
T Consensus 189 vDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~ 245 (470)
T PRK11933 189 LDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTL 245 (470)
T ss_pred EcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCC
Confidence 7542211 11111 12567888899999999999887764
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.55 E-value=7e-07 Score=82.07 Aligned_cols=104 Identities=19% Similarity=0.215 Sum_probs=81.5
Q ss_pred CEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc----CCCceeEEEEecc
Q 014247 114 KVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE----IDEEVDVIISEWM 187 (428)
Q Consensus 114 ~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~----~~~~~DlVvs~~~ 187 (428)
..+||||||.|.+...+|+. .-..++|||+. ..+..|.+.+.+.++. ++.+++.|+..+- .+++.|-|+.+..
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 58999999999999999987 45589999999 9999999999999887 5999999988752 2358999987542
Q ss_pred hhhhc--c---hhhHHHHHHHHhcccccCeEEEccC
Q 014247 188 GYMLL--Y---ESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 188 ~~~l~--~---~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
.-..- | ----+.+++.+.+.|+|||.+.+.+
T Consensus 129 DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 129 DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred CCCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 11110 1 0124788999999999999998654
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.54 E-value=4.3e-07 Score=87.79 Aligned_cols=107 Identities=28% Similarity=0.353 Sum_probs=88.8
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC-Cc
Q 014247 101 RAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID-EE 178 (428)
Q Consensus 101 ~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~-~~ 178 (428)
+..+.+.. ..|.+|||.=||-|.+++.+|+.|..+|+++|+| ..+..++++++.|++.+.+..+++|..++... +.
T Consensus 179 R~Rva~~v--~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~ 256 (341)
T COG2520 179 RARVAELV--KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGV 256 (341)
T ss_pred HHHHHhhh--cCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhcccc
Confidence 44455554 5699999999999999999999988779999999 99999999999999999999999999998776 88
Q ss_pred eeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 179 VDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 179 ~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
+|-|+...+ . ....++..+.+.+++||.+..
T Consensus 257 aDrIim~~p---~----~a~~fl~~A~~~~k~~g~iHy 287 (341)
T COG2520 257 ADRIIMGLP---K----SAHEFLPLALELLKDGGIIHY 287 (341)
T ss_pred CCEEEeCCC---C----cchhhHHHHHHHhhcCcEEEE
Confidence 999996442 1 234556666777888998874
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.54 E-value=8.7e-07 Score=86.25 Aligned_cols=126 Identities=22% Similarity=0.203 Sum_probs=98.6
Q ss_pred hhhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCC-------------------------------------
Q 014247 94 RVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAK------------------------------------- 136 (428)
Q Consensus 94 ~~r~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~------------------------------------- 136 (428)
..-.+.+..+|....+..++..++|--||+|.+...+|-.+..
T Consensus 173 ApLketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~ 252 (381)
T COG0116 173 APLKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGK 252 (381)
T ss_pred CCchHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcC
Confidence 3445788889988888888899999999999999998887531
Q ss_pred ---eEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC-CceeEEEEecc-hhhhcchhhH----HHHHHHHhc
Q 014247 137 ---RVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID-EEVDVIISEWM-GYMLLYESML----GSVITARDR 206 (428)
Q Consensus 137 ---~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~-~~~DlVvs~~~-~~~l~~~~~~----~~~l~~~~~ 206 (428)
.++|+|++ .+++.|+.+++..|+.+.|+|.++|+..+..+ +.+|+|||++. |.-+...... ..+.+.+++
T Consensus 253 ~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~ 332 (381)
T COG0116 253 ELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKR 332 (381)
T ss_pred ccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHH
Confidence 37799999 99999999999999999999999999999877 89999999973 2223333223 344455556
Q ss_pred ccccCeEEEccCC
Q 014247 207 WLKRGGLILPSYA 219 (428)
Q Consensus 207 ~LkpgG~lv~~~~ 219 (428)
.++--+..++++.
T Consensus 333 ~~~~ws~~v~tt~ 345 (381)
T COG0116 333 LLAGWSRYVFTTS 345 (381)
T ss_pred HhcCCceEEEEcc
Confidence 6666667766543
|
|
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.7e-07 Score=80.75 Aligned_cols=112 Identities=22% Similarity=0.342 Sum_probs=82.2
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCC
Q 014247 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDE 177 (428)
Q Consensus 99 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~ 177 (428)
...+.|.......+|++|||+|+|+|..+..++++|++.|++.|+. ......+-+++.|+. .|.+...|... .+.
T Consensus 66 ~lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv--~i~~~~~d~~g--~~~ 141 (218)
T COG3897 66 VLARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGV--SILFTHADLIG--SPP 141 (218)
T ss_pred HHHHHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccc--eeEEeeccccC--CCc
Confidence 3456667776778899999999999999999999999999999999 555556667888876 38888888766 447
Q ss_pred ceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 178 EVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 178 ~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
.||+|+..- ++.....-..++....++...|-.+++.
T Consensus 142 ~~Dl~LagD---lfy~~~~a~~l~~~~~~l~~~g~~vlvg 178 (218)
T COG3897 142 AFDLLLAGD---LFYNHTEADRLIPWKDRLAEAGAAVLVG 178 (218)
T ss_pred ceeEEEeec---eecCchHHHHHHHHHHHHHhCCCEEEEe
Confidence 899999643 4444444566666444444444455543
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=98.53 E-value=5.8e-07 Score=88.89 Aligned_cols=97 Identities=20% Similarity=0.223 Sum_probs=81.6
Q ss_pred CCEEEEEcCCCcHHHHHHHHc--CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC--CCceeEEEEecc
Q 014247 113 GKVVVDVGCGTGILSIFCAQA--GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI--DEEVDVIISEWM 187 (428)
Q Consensus 113 ~~~VLDiGcGtG~ls~~la~~--g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~--~~~~DlVvs~~~ 187 (428)
+.+|||+.||+|..++.+++. |+++|+++|++ ..++.++++++.|+.. +++++++|+..+-. ..+||+|..+++
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~-~~~v~~~Da~~~l~~~~~~fDvIdlDPf 123 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE-NIEVPNEDAANVLRYRNRKFHVIDIDPF 123 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEchhHHHHHHHhCCCCCEEEeCCC
Confidence 468999999999999999987 78899999999 9999999999999876 48999999887633 267999998762
Q ss_pred hhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 188 GYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 188 ~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
+ .+..+++.+.+.+++||.+.++
T Consensus 124 G-------s~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 124 G-------TPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred C-------CcHHHHHHHHHhcccCCEEEEE
Confidence 1 2446788888889999999876
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.2e-07 Score=87.25 Aligned_cols=126 Identities=13% Similarity=0.109 Sum_probs=86.3
Q ss_pred hccChhhHHHHHHHHHhccCCCCCCEEEEEcCCCcH----HHHHHHHcC-----CCeEEEEeCh-HHHHHHHHHH-----
Q 014247 90 MIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGI----LSIFCAQAG-----AKRVYAVDAS-DIAVQANEVV----- 154 (428)
Q Consensus 90 ~~~d~~r~~~~~~~i~~~~~~~~~~~VLDiGcGtG~----ls~~la~~g-----~~~V~giD~s-~~~~~a~~~~----- 154 (428)
+++|....+.+.+.+... .+..+|+..||+||- +++.+.+.+ .-+|+|+|+| .+++.|++-+
T Consensus 96 FFRd~~~f~~L~~~~~~~---~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~ 172 (287)
T PRK10611 96 FFREAHHFPILAEHARRR---SGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEE 172 (287)
T ss_pred ccCCcHHHHHHHHHHHhc---CCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHH
Confidence 345555555555554322 234799999999994 566665531 1279999999 9999887631
Q ss_pred -------------HH-----C-------CCCCcEEEEEcccccccC--CCceeEEEEecchhhhcchhhHHHHHHHHhcc
Q 014247 155 -------------KA-----N-------NLTDKVIVLHGRVEDVEI--DEEVDVIISEWMGYMLLYESMLGSVITARDRW 207 (428)
Q Consensus 155 -------------~~-----~-------~~~~~v~~~~~d~~~l~~--~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~ 207 (428)
.. . .+...|+|.+.|+.+.+. .+.||+|+|..+... ........+++.+.+.
T Consensus 173 ~r~~p~~~~~ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliy-F~~~~~~~vl~~l~~~ 251 (287)
T PRK10611 173 LKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIY-FDKTTQERILRRFVPL 251 (287)
T ss_pred HhcCCHHHHHHHcccccCCCCceEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhc-CCHHHHHHHHHHHHHH
Confidence 00 0 123568888888877433 489999999763322 2345688999999999
Q ss_pred cccCeEEEccCC
Q 014247 208 LKRGGLILPSYA 219 (428)
Q Consensus 208 LkpgG~lv~~~~ 219 (428)
|+|||.|++...
T Consensus 252 L~pgG~L~lG~s 263 (287)
T PRK10611 252 LKPDGLLFAGHS 263 (287)
T ss_pred hCCCcEEEEeCc
Confidence 999999987654
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.51 E-value=6.1e-07 Score=83.44 Aligned_cols=83 Identities=19% Similarity=0.282 Sum_probs=70.5
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCC-
Q 014247 100 YRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDE- 177 (428)
Q Consensus 100 ~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~- 177 (428)
..+.|.+.....++..|||||+|.|.++..+++.+. +|+++|++ .++...++... ..++++++++|+...+++.
T Consensus 18 v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~---~~~n~~vi~~DaLk~d~~~l 93 (259)
T COG0030 18 VIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFA---PYDNLTVINGDALKFDFPSL 93 (259)
T ss_pred HHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhcc---cccceEEEeCchhcCcchhh
Confidence 456667777777889999999999999999999955 89999999 88888877754 3357999999999988875
Q ss_pred -ceeEEEEec
Q 014247 178 -EVDVIISEW 186 (428)
Q Consensus 178 -~~DlVvs~~ 186 (428)
.++.|+++.
T Consensus 94 ~~~~~vVaNl 103 (259)
T COG0030 94 AQPYKVVANL 103 (259)
T ss_pred cCCCEEEEcC
Confidence 789999986
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=98.50 E-value=2e-06 Score=76.64 Aligned_cols=95 Identities=31% Similarity=0.412 Sum_probs=76.5
Q ss_pred EEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEEecchhhhc
Q 014247 115 VVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWMGYMLL 192 (428)
Q Consensus 115 ~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~~~~~~l~ 192 (428)
+++|||+|.|.-++.+|-. ...+++.+|.+ .-+...+..+..-++.+ ++++++++++.....+||+|++..+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~n-v~v~~~R~E~~~~~~~fd~v~aRAv----- 124 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSN-VEVINGRAEEPEYRESFDVVTARAV----- 124 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SS-EEEEES-HHHTTTTT-EEEEEEESS-----
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCC-EEEEEeeecccccCCCccEEEeehh-----
Confidence 8999999999988887776 34589999999 88888888888888975 9999999999444589999999763
Q ss_pred chhhHHHHHHHHhcccccCeEEEcc
Q 014247 193 YESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 193 ~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
..+..++.-+..+|++||.++.-
T Consensus 125 --~~l~~l~~~~~~~l~~~G~~l~~ 147 (184)
T PF02527_consen 125 --APLDKLLELARPLLKPGGRLLAY 147 (184)
T ss_dssp --SSHHHHHHHHGGGEEEEEEEEEE
T ss_pred --cCHHHHHHHHHHhcCCCCEEEEE
Confidence 23677888889999999998853
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.8e-06 Score=74.73 Aligned_cols=101 Identities=19% Similarity=0.288 Sum_probs=77.9
Q ss_pred CCEEEEEcCCCcHHHHHHHHc--CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEEecchh
Q 014247 113 GKVVVDVGCGTGILSIFCAQA--GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWMGY 189 (428)
Q Consensus 113 ~~~VLDiGcGtG~ls~~la~~--g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~~~~~ 189 (428)
...+||||||+|..+-.+++. +...+.++|+| ..++..++.++.|+. ++.+++.|+..--.++++|+++-+.. |
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~--~~~~V~tdl~~~l~~~~VDvLvfNPP-Y 120 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV--HIDVVRTDLLSGLRNESVDVLVFNPP-Y 120 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC--ccceeehhHHhhhccCCccEEEECCC-c
Confidence 678999999999999999886 34478899999 888888888888765 37889999876544589999998762 1
Q ss_pred hh-------------------cchhhHHHHHHHHhcccccCeEEEc
Q 014247 190 ML-------------------LYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 190 ~l-------------------~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
+. .+..-.+.++..+..+|.|.|.+++
T Consensus 121 Vpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Yl 166 (209)
T KOG3191|consen 121 VPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYL 166 (209)
T ss_pred CcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEe
Confidence 11 1112267788888899999998874
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.45 E-value=4.7e-07 Score=75.23 Aligned_cols=83 Identities=23% Similarity=0.318 Sum_probs=69.8
Q ss_pred HHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC-Cce
Q 014247 102 AAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID-EEV 179 (428)
Q Consensus 102 ~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~-~~~ 179 (428)
..|-.......|++++|+|||.|.++..++-.+...|.|+|+. +.++.+.+++.+..+ ++.++++|+.++.+. +.|
T Consensus 38 ~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEv--qidlLqcdildle~~~g~f 115 (185)
T KOG3420|consen 38 YTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEV--QIDLLQCDILDLELKGGIF 115 (185)
T ss_pred HHHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhh--hhheeeeeccchhccCCeE
Confidence 3445555668899999999999999977777788899999999 999999998887655 479999999987765 899
Q ss_pred eEEEEec
Q 014247 180 DVIISEW 186 (428)
Q Consensus 180 DlVvs~~ 186 (428)
|.++.++
T Consensus 116 DtaviNp 122 (185)
T KOG3420|consen 116 DTAVINP 122 (185)
T ss_pred eeEEecC
Confidence 9999876
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.3e-06 Score=94.00 Aligned_cols=122 Identities=23% Similarity=0.249 Sum_probs=90.0
Q ss_pred hhHHHHHHHHHhccCC-CCCCEEEEEcCCCcHHHHHHHHcC---------------------------------------
Q 014247 95 VRTETYRAAIMQNQSF-IEGKVVVDVGCGTGILSIFCAQAG--------------------------------------- 134 (428)
Q Consensus 95 ~r~~~~~~~i~~~~~~-~~~~~VLDiGcGtG~ls~~la~~g--------------------------------------- 134 (428)
.-.+.+..++...... .++..++|.+||+|.+...+|...
T Consensus 172 pl~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~ 251 (702)
T PRK11783 172 PLKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAG 251 (702)
T ss_pred CCcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhc
Confidence 3346777778777665 567899999999999998887521
Q ss_pred ----CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC---CceeEEEEecc-hhhhcchhhHHHHHHHHh
Q 014247 135 ----AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID---EEVDVIISEWM-GYMLLYESMLGSVITARD 205 (428)
Q Consensus 135 ----~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~---~~~DlVvs~~~-~~~l~~~~~~~~~l~~~~ 205 (428)
..+++|+|++ .++..|++++..+|+.+.+++.++|+.+++.+ ++||+|++++. +.-+....++..+...+.
T Consensus 252 ~~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg 331 (702)
T PRK11783 252 LAELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLG 331 (702)
T ss_pred ccccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHH
Confidence 1269999999 99999999999999998899999999987653 46999999973 222222334555555554
Q ss_pred cccc---cCeEEEc
Q 014247 206 RWLK---RGGLILP 216 (428)
Q Consensus 206 ~~Lk---pgG~lv~ 216 (428)
..|+ +|+.+++
T Consensus 332 ~~lk~~~~g~~~~l 345 (702)
T PRK11783 332 RRLKQQFGGWNAAL 345 (702)
T ss_pred HHHHHhCCCCeEEE
Confidence 4444 7776643
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=98.43 E-value=5.9e-07 Score=77.89 Aligned_cols=72 Identities=22% Similarity=0.258 Sum_probs=56.4
Q ss_pred CEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC----CceeEEEEec
Q 014247 114 KVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID----EEVDVIISEW 186 (428)
Q Consensus 114 ~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~----~~~DlVvs~~ 186 (428)
.+|+|+.||.|..+..+|+. +++|++||++ ..++.|+.+++-.|..++|+++++|+.++... ..+|+|+.++
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP 77 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFART-FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP 77 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred CEEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence 37999999999999999998 5699999999 99999999999999999999999999886432 2289999876
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=98.43 E-value=4.8e-06 Score=75.52 Aligned_cols=118 Identities=25% Similarity=0.316 Sum_probs=84.7
Q ss_pred EEEEcCCCcHHHHHHHHcC-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccc-ccCCCceeEEEEecchhhhc
Q 014247 116 VVDVGCGTGILSIFCAQAG-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVED-VEIDEEVDVIISEWMGYMLL 192 (428)
Q Consensus 116 VLDiGcGtG~ls~~la~~g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~-l~~~~~~DlVvs~~~~~~l~ 192 (428)
|.||||--|.++..|.+.| +.+|+++|++ .-++.|++++...++.++++++.+|-.+ ++..+..|+|+...||..+
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGMGG~l- 79 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGMGGEL- 79 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-HHH-
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecCCHHH-
Confidence 6899999999999999986 4589999999 8999999999999999999999999554 4433448999988776544
Q ss_pred chhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhhccCCCCcchhHHHHHhcCCCCce
Q 014247 193 YESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAMMPLAKQCAFEEPS 263 (428)
Q Consensus 193 ~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~ 263 (428)
...+|.+....++....+++ .|.. +...++++|.+.||....
T Consensus 80 ----I~~ILe~~~~~~~~~~~lIL-------qP~~------------------~~~~LR~~L~~~gf~I~~ 121 (205)
T PF04816_consen 80 ----IIEILEAGPEKLSSAKRLIL-------QPNT------------------HAYELRRWLYENGFEIID 121 (205)
T ss_dssp ----HHHHHHHTGGGGTT--EEEE-------EESS-------------------HHHHHHHHHHTTEEEEE
T ss_pred ----HHHHHHhhHHHhccCCeEEE-------eCCC------------------ChHHHHHHHHHCCCEEEE
Confidence 67778877777766666664 3432 234678889999997644
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.42 E-value=4.5e-07 Score=88.01 Aligned_cols=199 Identities=13% Similarity=0.074 Sum_probs=123.5
Q ss_pred CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEEecc--hhhhcchh-hHHHHHHHHhccccc
Q 014247 135 AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWM--GYMLLYES-MLGSVITARDRWLKR 210 (428)
Q Consensus 135 ~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~~~--~~~l~~~~-~~~~~l~~~~~~Lkp 210 (428)
..+++-++.+ .......+++-...+.+ ++.+..= +..+++.|+|..+++ ..+..|.. .+......+...+-|
T Consensus 389 ~~~r~~~~l~e~~r~if~~~~~~~Klsn-~e~vp~i---~t~~ds~~ivl~epf~~tam~PW~~L~F~Y~~~~l~~~~G~ 464 (636)
T KOG1501|consen 389 WPKRIQARLSERERVIFNQRLIQLKLSN-NESVPAI---MTSPDSPDIVLAEPFVKTAMNPWNHLRFLYDVEVLKMMHGD 464 (636)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcc-cccchhh---hcCCCCCceeecchhhhhccCchhheeeeeeHHHHHHhcCC
Confidence 4466667777 33333333333333332 3333221 122345688877652 22222221 122234455667889
Q ss_pred CeEEEccCCeeeEeecCCccchhhhhhhhhccCCCCcchhHHHHHhc-CCCCceEEeec----CCccccCCeeEEEEeCC
Q 014247 211 GGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAMMPLAKQC-AFEEPSVETIT----GENVLTWPHVVKHVDCY 285 (428)
Q Consensus 211 gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-Gf~~~~~~~~~----~~~~ls~p~~~~~~d~~ 285 (428)
+-++.|..+.+.+.+....+++... .-...+.|||++-+.++..++ .|....+...+ +..+++++..+.+|++.
T Consensus 465 ~~~V~P~~~~L~Ai~~kF~DL~~I~-S~~G~~~GFDl~~~Dei~~kA~~~~da~~~E~~LWEY~~~~~~d~~eIL~F~~~ 543 (636)
T KOG1501|consen 465 ELRVEPHMGVLKAIPEKFEDLQNIA-SDVGTVNGFDLSFFDEISTKARTATDAIVDEQSLWEYAGIVKGDAVEILRFPID 543 (636)
T ss_pred ceeeccccchhhhhhHHHHHHHhhc-ccccccccceeeehhHHHHhhchhhhhhhccchhhhccCeecCCceeEEEeccC
Confidence 9999999888887776666554432 223468899999888887766 45444433322 45778999999999997
Q ss_pred CCCcccccceeeeeEEEEeeccceeEEEEEEEeeccCCCCCCCCCCCCCcccCCCCCCCCccccccccCCCCCcEEEecC
Q 014247 286 TIQIHELESIATTFKFKSMMRAPLHGFAFWFDVEFSTPAISPANNHIPPVVVGSSNNHPMDGCQKKKRANPNEALVLSTA 365 (428)
Q Consensus 286 ~~~~~~l~~~~~~~~~~~~~~g~~~g~~~wf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSt~ 365 (428)
..-.. .+..+.+.+.+.-|++.+|+|++|. .+.|||+
T Consensus 544 ~~V~~------Qk~~V~i~~~~sS~A~~mWME~~~~-------------------------------------~~nLSTG 580 (636)
T KOG1501|consen 544 GRVSS------QKCVVNIDNMSSSNAIPMWMEWEFG-------------------------------------GINLSTG 580 (636)
T ss_pred Ccccc------ceeEEEccCCCccccceeeEEeeeC-------------------------------------ceeeccc
Confidence 53222 2455777788999999999999995 4666666
Q ss_pred ---------CCCCCCceeeeEEeeCC
Q 014247 366 ---------PEDPPTHWQQTMIYFYD 382 (428)
Q Consensus 366 ---------P~~~~thW~q~~~~l~~ 382 (428)
|. |..|.||+||++..
T Consensus 581 LL~~~~~G~~~-WN~~~KQ~VYF~~t 605 (636)
T KOG1501|consen 581 LLSISSAGVPE-WNKGYKQGVYFPIT 605 (636)
T ss_pred ceeecCCCCcc-cCccccceeEEEhH
Confidence 33 66899999998743
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.4e-06 Score=77.19 Aligned_cols=98 Identities=20% Similarity=0.267 Sum_probs=73.1
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHc-CCC--eEEEEeCh-HHHHHHHHHHHHCC--------C-CCcEEEEEcccccccCC
Q 014247 110 FIEGKVVVDVGCGTGILSIFCAQA-GAK--RVYAVDAS-DIAVQANEVVKANN--------L-TDKVIVLHGRVEDVEID 176 (428)
Q Consensus 110 ~~~~~~VLDiGcGtG~ls~~la~~-g~~--~V~giD~s-~~~~~a~~~~~~~~--------~-~~~v~~~~~d~~~l~~~ 176 (428)
+.+|.+.||+|.|+|.|+..+++. |+. .++|||.- ++++.+++++...- + ..++.++.+|......+
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e 159 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE 159 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc
Confidence 489999999999999999998875 332 34999988 99999998887643 1 24578889998886554
Q ss_pred -CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 177 -EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 177 -~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
.+||.|.+-. ....+.+++...|++||.+++
T Consensus 160 ~a~YDaIhvGA---------aa~~~pq~l~dqL~~gGrlli 191 (237)
T KOG1661|consen 160 QAPYDAIHVGA---------AASELPQELLDQLKPGGRLLI 191 (237)
T ss_pred cCCcceEEEcc---------CccccHHHHHHhhccCCeEEE
Confidence 8999999732 122334455566888887764
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.6e-06 Score=81.55 Aligned_cols=129 Identities=17% Similarity=0.208 Sum_probs=89.7
Q ss_pred hccChhhHHHHHHHHHhcc-CCC--CCCEEEEEcCCCcH----HHHHHHHcC------CCeEEEEeCh-HHHHHHHHHHH
Q 014247 90 MIKDRVRTETYRAAIMQNQ-SFI--EGKVVVDVGCGTGI----LSIFCAQAG------AKRVYAVDAS-DIAVQANEVVK 155 (428)
Q Consensus 90 ~~~d~~r~~~~~~~i~~~~-~~~--~~~~VLDiGcGtG~----ls~~la~~g------~~~V~giD~s-~~~~~a~~~~~ 155 (428)
++.++...+.+.+.+...+ ... ..-+|+-+||+||- +++.+.+.+ .-+|+|+|++ ..++.|+.-+=
T Consensus 71 FFR~~~~f~~l~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y 150 (268)
T COG1352 71 FFRDPEHFEELRDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIY 150 (268)
T ss_pred hccCcHHHHHHHHHHHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCC
Confidence 4556666666666666532 112 35799999999994 666666653 2389999999 99988865211
Q ss_pred H-----C-----------------------CCCCcEEEEEccccccc-CCCceeEEEEecchhhhcchhhHHHHHHHHhc
Q 014247 156 A-----N-----------------------NLTDKVIVLHGRVEDVE-IDEEVDVIISEWMGYMLLYESMLGSVITARDR 206 (428)
Q Consensus 156 ~-----~-----------------------~~~~~v~~~~~d~~~l~-~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~ 206 (428)
. . .+...|.|...|+.+-. ..+.||+|+|..+. .......-..++..++.
T Consensus 151 ~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVL-IYFd~~~q~~il~~f~~ 229 (268)
T COG1352 151 PSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVL-IYFDEETQERILRRFAD 229 (268)
T ss_pred ChhHhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceE-EeeCHHHHHHHHHHHHH
Confidence 1 1 12235777777776655 56889999997643 23344558899999999
Q ss_pred ccccCeEEEccCC
Q 014247 207 WLKRGGLILPSYA 219 (428)
Q Consensus 207 ~LkpgG~lv~~~~ 219 (428)
.|+|||.|++...
T Consensus 230 ~L~~gG~LflG~s 242 (268)
T COG1352 230 SLKPGGLLFLGHS 242 (268)
T ss_pred HhCCCCEEEEccC
Confidence 9999999998654
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.40 E-value=2e-06 Score=77.49 Aligned_cols=107 Identities=20% Similarity=0.218 Sum_probs=85.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc--CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccc-c------CCCcee
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQA--GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDV-E------IDEEVD 180 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~--g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l-~------~~~~~D 180 (428)
..++++||||.=||.-++..|.+ .-.+|+++|++ ...+.+.+..+..+...+|+++++++.+. + ..+.||
T Consensus 72 ~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfD 151 (237)
T KOG1663|consen 72 LNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFD 151 (237)
T ss_pred hCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCcee
Confidence 57789999999999988888876 23499999999 89999999999999999999999987652 1 138999
Q ss_pred EEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeE
Q 014247 181 VIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYM 223 (428)
Q Consensus 181 lVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~ 223 (428)
.++... +.......+.++.++|++||++++....+..
T Consensus 152 faFvDa------dK~nY~~y~e~~l~Llr~GGvi~~DNvl~~G 188 (237)
T KOG1663|consen 152 FAFVDA------DKDNYSNYYERLLRLLRVGGVIVVDNVLWPG 188 (237)
T ss_pred EEEEcc------chHHHHHHHHHHHhhcccccEEEEeccccCC
Confidence 999743 2233346777888999999999987654443
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.9e-06 Score=76.94 Aligned_cols=109 Identities=21% Similarity=0.317 Sum_probs=65.1
Q ss_pred HHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHH-------HCCC-CCcEEEEEcccccc
Q 014247 104 IMQNQSFIEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVK-------ANNL-TDKVIVLHGRVEDV 173 (428)
Q Consensus 104 i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~-------~~~~-~~~v~~~~~d~~~l 173 (428)
|.+.+...++.+.+|||||.|.....+|.. ++++++|||+. .....|....+ ..+. ..++++.++|+.+.
T Consensus 34 il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~ 113 (205)
T PF08123_consen 34 ILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDP 113 (205)
T ss_dssp HHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTH
T ss_pred HHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCcccc
Confidence 344566788999999999999988777654 88889999999 66666654322 2333 34688899998764
Q ss_pred cCC----CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 174 EID----EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 174 ~~~----~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
+.. ...|+|+++. ... .+++...|.++...||+|.++|-
T Consensus 114 ~~~~~~~s~AdvVf~Nn---~~F-~~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 114 DFVKDIWSDADVVFVNN---TCF-DPDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp HHHHHHGHC-SEEEE-----TTT--HHHHHHHHHHHTTS-TT-EEEE
T ss_pred HhHhhhhcCCCEEEEec---ccc-CHHHHHHHHHHHhcCCCCCEEEE
Confidence 321 4679999976 333 33455666777788999988873
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.37 E-value=3e-06 Score=72.31 Aligned_cols=111 Identities=18% Similarity=0.217 Sum_probs=84.1
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCC--CeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC
Q 014247 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGA--KRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI 175 (428)
Q Consensus 99 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~--~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~ 175 (428)
...+.+...+....|.-||++|.|||.++..+.++|. ..++++|.| +......+.. +.+.++++|+.++..
T Consensus 35 ~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~------p~~~ii~gda~~l~~ 108 (194)
T COG3963 35 ILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY------PGVNIINGDAFDLRT 108 (194)
T ss_pred HHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC------CCccccccchhhHHH
Confidence 4456666677778889999999999999999999864 489999999 8877665553 237799999988751
Q ss_pred ------CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 176 ------DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 176 ------~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
...||.|+|.... ........-++|+.+...|.+||.++-
T Consensus 109 ~l~e~~gq~~D~viS~lPl-l~~P~~~~iaile~~~~rl~~gg~lvq 154 (194)
T COG3963 109 TLGEHKGQFFDSVISGLPL-LNFPMHRRIAILESLLYRLPAGGPLVQ 154 (194)
T ss_pred HHhhcCCCeeeeEEecccc-ccCcHHHHHHHHHHHHHhcCCCCeEEE
Confidence 3789999996521 111223356778888888999998874
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.9e-06 Score=80.50 Aligned_cols=107 Identities=18% Similarity=0.150 Sum_probs=83.2
Q ss_pred CEEEEEcCCCcHHHHHHHHcC-CCeEEEEeCh-HHHHHHHHHHHHCC--C-CCcEEEEEcccccccC--CCceeEEEEec
Q 014247 114 KVVVDVGCGTGILSIFCAQAG-AKRVYAVDAS-DIAVQANEVVKANN--L-TDKVIVLHGRVEDVEI--DEEVDVIISEW 186 (428)
Q Consensus 114 ~~VLDiGcGtG~ls~~la~~g-~~~V~giD~s-~~~~~a~~~~~~~~--~-~~~v~~~~~d~~~l~~--~~~~DlVvs~~ 186 (428)
++||-||.|.|..+..+.+.. ..+++.||++ .+++.+++.+.... . ..|++++..|..++-. +++||+|++..
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~ 157 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDS 157 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcC
Confidence 699999999999999999984 6799999999 99999998775432 2 3789999999877532 36899999976
Q ss_pred chhhhcch-hhHHHHHHHHhcccccCeEEEccCCe
Q 014247 187 MGYMLLYE-SMLGSVITARDRWLKRGGLILPSYAT 220 (428)
Q Consensus 187 ~~~~l~~~-~~~~~~l~~~~~~LkpgG~lv~~~~~ 220 (428)
....-..+ ..-..+++.+++.|+++|+++....+
T Consensus 158 tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~ 192 (282)
T COG0421 158 TDPVGPAEALFTEEFYEGCRRALKEDGIFVAQAGS 192 (282)
T ss_pred CCCCCcccccCCHHHHHHHHHhcCCCcEEEEecCC
Confidence 33211111 11478899999999999999976443
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.36 E-value=3.9e-06 Score=77.11 Aligned_cols=106 Identities=25% Similarity=0.281 Sum_probs=86.3
Q ss_pred HHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc--CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC--
Q 014247 102 AAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA--GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID-- 176 (428)
Q Consensus 102 ~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~-- 176 (428)
..|...+...+|.+||+-|.|+|.++..++++ .-.+++..|+- .-++.|++.+++.++.+++++.+.|+....+.
T Consensus 95 a~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~k 174 (314)
T KOG2915|consen 95 AMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIK 174 (314)
T ss_pred HHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCcccc
Confidence 45677778899999999999999999999997 34699999999 88888999999999999999999999886553
Q ss_pred -CceeEEEEecchhhhcchhhHHHHHHHHhcccccCe-EEE
Q 014247 177 -EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGG-LIL 215 (428)
Q Consensus 177 -~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG-~lv 215 (428)
..+|.|+.+. +.+..++--++..||.+| +++
T Consensus 175 s~~aDaVFLDl--------PaPw~AiPha~~~lk~~g~r~c 207 (314)
T KOG2915|consen 175 SLKADAVFLDL--------PAPWEAIPHAAKILKDEGGRLC 207 (314)
T ss_pred ccccceEEEcC--------CChhhhhhhhHHHhhhcCceEE
Confidence 6899998754 234555555566788766 443
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.5e-06 Score=84.16 Aligned_cols=93 Identities=26% Similarity=0.339 Sum_probs=65.9
Q ss_pred hHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc
Q 014247 96 RTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE 174 (428)
Q Consensus 96 r~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~ 174 (428)
-++.+.+.+.+.+...++ .|||+-||.|.+++.+|+. +++|+|||.+ ++++.|++++..|++.+ ++|+.++++++.
T Consensus 181 ~~~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~-~~~V~gvE~~~~av~~A~~Na~~N~i~n-~~f~~~~~~~~~ 257 (352)
T PF05958_consen 181 QNEKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKK-AKKVIGVEIVEEAVEDARENAKLNGIDN-VEFIRGDAEDFA 257 (352)
T ss_dssp HHHHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCC-SSEEEEEES-HHHHHHHHHHHHHTT--S-EEEEE--SHHCC
T ss_pred HHHHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhh-CCeEEEeeCCHHHHHHHHHHHHHcCCCc-ceEEEeeccchh
Confidence 345666666777765555 8999999999999999997 6699999999 99999999999999975 999998876542
Q ss_pred C-----------------CCceeEEEEecchhhh
Q 014247 175 I-----------------DEEVDVIISEWMGYML 191 (428)
Q Consensus 175 ~-----------------~~~~DlVvs~~~~~~l 191 (428)
. ...+|+|+.++.-..+
T Consensus 258 ~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~ 291 (352)
T PF05958_consen 258 KALAKAREFNRLKGIDLKSFKFDAVILDPPRAGL 291 (352)
T ss_dssp CHHCCS-GGTTGGGS-GGCTTESEEEE---TT-S
T ss_pred HHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCc
Confidence 1 1268999988754444
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.9e-07 Score=91.73 Aligned_cols=117 Identities=17% Similarity=0.292 Sum_probs=77.3
Q ss_pred HHHHHHHHHhccCC--CCC--CEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh----HHHHHHHHHHHHCCCCCcEEEEEc
Q 014247 97 TETYRAAIMQNQSF--IEG--KVVVDVGCGTGILSIFCAQAGAKRVYAVDAS----DIAVQANEVVKANNLTDKVIVLHG 168 (428)
Q Consensus 97 ~~~~~~~i~~~~~~--~~~--~~VLDiGcGtG~ls~~la~~g~~~V~giD~s----~~~~~a~~~~~~~~~~~~v~~~~~ 168 (428)
...|.+.|.+.+.. ..+ .++||+|||+|.++..+..++. .+..+-+. .+++.|.+ .|+..-+.+ .
T Consensus 98 a~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V-~t~s~a~~d~~~~qvqfale----RGvpa~~~~--~ 170 (506)
T PF03141_consen 98 ADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNV-TTMSFAPNDEHEAQVQFALE----RGVPAMIGV--L 170 (506)
T ss_pred HHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCc-eEEEcccccCCchhhhhhhh----cCcchhhhh--h
Confidence 34677777777654 222 4899999999999999999865 33333332 33444433 344321211 1
Q ss_pred ccccccCC-CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeee
Q 014247 169 RVEDVEID-EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLY 222 (428)
Q Consensus 169 d~~~l~~~-~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 222 (428)
-...++++ ..||+|.|.- ....+...-..+|-++.|+|+|||.++.+.+..+
T Consensus 171 ~s~rLPfp~~~fDmvHcsr--c~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 171 GSQRLPFPSNAFDMVHCSR--CLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred ccccccCCccchhhhhccc--ccccchhcccceeehhhhhhccCceEEecCCccc
Confidence 23557776 8999999943 2344444445678899999999999999877665
|
; GO: 0008168 methyltransferase activity |
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.4e-06 Score=80.05 Aligned_cols=107 Identities=17% Similarity=0.125 Sum_probs=79.0
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEeCh-HHHHHHHHHHHHCCC---CCcEEEEEcccccccC--CC-ceeEE
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAG-AKRVYAVDAS-DIAVQANEVVKANNL---TDKVIVLHGRVEDVEI--DE-EVDVI 182 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g-~~~V~giD~s-~~~~~a~~~~~~~~~---~~~v~~~~~d~~~l~~--~~-~~DlV 182 (428)
.+.++||-||.|.|..+..+.+.. .++|+.||++ .+++.|++.+..... .++++++.+|....-. .+ +||+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 467899999999999999999874 6799999999 889999887654322 4689999999877422 25 89999
Q ss_pred EEecchhhhcch-hhHHHHHHHHhcccccCeEEEcc
Q 014247 183 ISEWMGYMLLYE-SMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 183 vs~~~~~~l~~~-~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
+.+......... ..-.++++.+.+.|+|||+++..
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~ 190 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQ 190 (246)
T ss_dssp EEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEE
T ss_pred EEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEE
Confidence 997643111111 12468899999999999999864
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.5e-06 Score=77.35 Aligned_cols=106 Identities=27% Similarity=0.312 Sum_probs=77.4
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcE-EEEEcccccccC-
Q 014247 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKV-IVLHGRVEDVEI- 175 (428)
Q Consensus 99 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v-~~~~~d~~~l~~- 175 (428)
.+..++...--..+++++||||+.||.++..+.+.|+++|+|+|.. .++..-.+. ..+| .+...+++.+..
T Consensus 66 KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~------d~rV~~~E~tN~r~l~~~ 139 (245)
T COG1189 66 KLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRN------DPRVIVLERTNVRYLTPE 139 (245)
T ss_pred HHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhc------CCcEEEEecCChhhCCHH
Confidence 4555666554467899999999999999999999999999999999 766543221 1233 333445655543
Q ss_pred --CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 176 --DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 176 --~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
.+..|+++|+. .+ -.+..+|..+..+|+|+|.+++
T Consensus 140 ~~~~~~d~~v~Dv---SF---ISL~~iLp~l~~l~~~~~~~v~ 176 (245)
T COG1189 140 DFTEKPDLIVIDV---SF---ISLKLILPALLLLLKDGGDLVL 176 (245)
T ss_pred HcccCCCeEEEEe---eh---hhHHHHHHHHHHhcCCCceEEE
Confidence 26789999975 11 2377888899999999997764
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.27 E-value=4.3e-06 Score=78.04 Aligned_cols=148 Identities=14% Similarity=0.174 Sum_probs=87.1
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHC----------------CCC-----------C
Q 014247 110 FIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKAN----------------NLT-----------D 161 (428)
Q Consensus 110 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~----------------~~~-----------~ 161 (428)
..+|.++||||||.-......|..-+++++..|.+ ...+..++.++.. |-. .
T Consensus 54 ~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 54 GVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp SS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 35678999999999777655555568899999999 6666655554332 100 1
Q ss_pred cE-EEEEcccccccC-------CCceeEEEEec-chhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccch
Q 014247 162 KV-IVLHGRVEDVEI-------DEEVDVIISEW-MGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRY 232 (428)
Q Consensus 162 ~v-~~~~~d~~~l~~-------~~~~DlVvs~~-~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~ 232 (428)
.| .++.+|+.+.+. +.+||+|++.. +...-........+++.+.++|||||.|++... + ....|
T Consensus 134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~------l-~~t~Y 206 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGV------L-GSTYY 206 (256)
T ss_dssp HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEE------S-S-SEE
T ss_pred hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEE------c-CceeE
Confidence 13 477788876432 24699999865 222333445678889999999999999986421 1 11111
Q ss_pred hhhhhhhhccCCCCcchhHHHHHhcCCCCceEE
Q 014247 233 SESIDFWRNVYGIDMSAMMPLAKQCAFEEPSVE 265 (428)
Q Consensus 233 ~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~ 265 (428)
.-....+ ....++.+.+.+.++++||.....+
T Consensus 207 ~vG~~~F-~~l~l~ee~v~~al~~aG~~i~~~~ 238 (256)
T PF01234_consen 207 MVGGHKF-PCLPLNEEFVREALEEAGFDIEDLE 238 (256)
T ss_dssp EETTEEE-E---B-HHHHHHHHHHTTEEEEEEE
T ss_pred EECCEec-ccccCCHHHHHHHHHHcCCEEEecc
Confidence 1000000 2345677889999999999765544
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.24 E-value=8.9e-06 Score=73.79 Aligned_cols=95 Identities=29% Similarity=0.367 Sum_probs=77.4
Q ss_pred CCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCc-eeEEEEecchh
Q 014247 113 GKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEE-VDVIISEWMGY 189 (428)
Q Consensus 113 ~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~-~DlVvs~~~~~ 189 (428)
+.+++|||+|.|.-+..+|-. ...+|+-+|.. .-+...+....+-++.+ ++++++.++++....+ ||+|+|..+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~n-v~i~~~RaE~~~~~~~~~D~vtsRAv-- 144 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLEN-VEIVHGRAEEFGQEKKQYDVVTSRAV-- 144 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCC-eEEehhhHhhcccccccCcEEEeehc--
Confidence 589999999999988887743 33479999999 88888888888888875 9999999999876545 999999763
Q ss_pred hhcchhhHHHHHHHHhcccccCeEEE
Q 014247 190 MLLYESMLGSVITARDRWLKRGGLIL 215 (428)
Q Consensus 190 ~l~~~~~~~~~l~~~~~~LkpgG~lv 215 (428)
..+..+..-+..+|++||.++
T Consensus 145 -----a~L~~l~e~~~pllk~~g~~~ 165 (215)
T COG0357 145 -----ASLNVLLELCLPLLKVGGGFL 165 (215)
T ss_pred -----cchHHHHHHHHHhcccCCcch
Confidence 236667777789999999876
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.15 E-value=1e-05 Score=83.72 Aligned_cols=106 Identities=14% Similarity=0.143 Sum_probs=79.9
Q ss_pred CCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc---CCCceeEEEEec
Q 014247 112 EGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE---IDEEVDVIISEW 186 (428)
Q Consensus 112 ~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~---~~~~~DlVvs~~ 186 (428)
.+..+||||||.|.+...+|+. .-..++|+|+. ..+..|.+.+...++.| +.++..|+..+. .++++|.|+...
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N-~~~~~~~~~~~~~~~~~~sv~~i~i~F 425 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITN-FLLFPNNLDLILNDLPNNSLDGIYILF 425 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCe-EEEEcCCHHHHHHhcCcccccEEEEEC
Confidence 4679999999999999999987 44589999999 88888878888888865 888988876442 237899999754
Q ss_pred chhhhc--c---hhhHHHHHHHHhcccccCeEEEccC
Q 014247 187 MGYMLL--Y---ESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 187 ~~~~l~--~---~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
..-..- | .-.-+.+++.+.++|+|||.+.+.+
T Consensus 426 PDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 426 PDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred CCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 221110 0 0124778999999999999988654
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=98.13 E-value=7.1e-06 Score=73.22 Aligned_cols=94 Identities=28% Similarity=0.351 Sum_probs=59.9
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcC--CCeEEEEeChHHHHHHHHHHHHCCCCCcEEEEEccccccc---------C--CCc
Q 014247 112 EGKVVVDVGCGTGILSIFCAQAG--AKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDVE---------I--DEE 178 (428)
Q Consensus 112 ~~~~VLDiGcGtG~ls~~la~~g--~~~V~giD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~---------~--~~~ 178 (428)
++.+|||+||++|.++..+.+.+ ..+|+|+|+.++ ... ..+.++++|+.+.. . .++
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~----------~~~-~~~~~i~~d~~~~~~~~~i~~~~~~~~~~ 91 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM----------DPL-QNVSFIQGDITNPENIKDIRKLLPESGEK 91 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST----------GS--TTEEBTTGGGEEEEHSHHGGGSHGTTTCS
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc----------ccc-cceeeeecccchhhHHHhhhhhccccccC
Confidence 45899999999999999999997 569999999944 111 23677777765421 0 158
Q ss_pred eeEEEEecchhhhc--------chhhHHHHHHHHhcccccCeEEEc
Q 014247 179 VDVIISEWMGYMLL--------YESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 179 ~DlVvs~~~~~~l~--------~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
+|+|+|......-. ........+.-+..+|+|||.+++
T Consensus 92 ~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~ 137 (181)
T PF01728_consen 92 FDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVI 137 (181)
T ss_dssp ESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEE
T ss_pred cceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEE
Confidence 99999976211111 111233334455577999998875
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=7.9e-06 Score=78.05 Aligned_cols=82 Identities=21% Similarity=0.272 Sum_probs=65.9
Q ss_pred HHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcC--CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC--C
Q 014247 102 AAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAG--AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI--D 176 (428)
Q Consensus 102 ~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g--~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~--~ 176 (428)
+.+.+.+...++..+||.+||.|..+..+++.. ..+|+|+|.+ .++..|++++.. .++++++++++.++.. +
T Consensus 9 ~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l~~~l~ 85 (296)
T PRK00050 9 DEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNLKEVLA 85 (296)
T ss_pred HHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHHHHHHH
Confidence 344555556788899999999999999999984 3589999999 999999887654 4579999999987632 1
Q ss_pred C---ceeEEEEec
Q 014247 177 E---EVDVIISEW 186 (428)
Q Consensus 177 ~---~~DlVvs~~ 186 (428)
. ++|.|+.++
T Consensus 86 ~~~~~vDgIl~DL 98 (296)
T PRK00050 86 EGLGKVDGILLDL 98 (296)
T ss_pred cCCCccCEEEECC
Confidence 2 799999875
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.6e-05 Score=76.49 Aligned_cols=86 Identities=23% Similarity=0.273 Sum_probs=66.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeChHHHHHHHHHHHHCCCCCcEEEEEcccccccC-CCceeEEEEecchh
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDVEI-DEEVDVIISEWMGY 189 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~-~~~~DlVvs~~~~~ 189 (428)
.+|+++|||||++|.++..+++.|+ +|+|||..+|.... .. ..+|+.+.+|...... .+.+|+|+|...
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~l~~~L----~~---~~~V~h~~~d~fr~~p~~~~vDwvVcDmv-- 279 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGPMAQSL----MD---TGQVEHLRADGFKFRPPRKNVDWLVCDMV-- 279 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechhcCHhh----hC---CCCEEEEeccCcccCCCCCCCCEEEEecc--
Confidence 6889999999999999999999988 99999977764332 22 2468888888766554 588999999761
Q ss_pred hhcchhhHHHHHHHHhcccccC
Q 014247 190 MLLYESMLGSVITARDRWLKRG 211 (428)
Q Consensus 190 ~l~~~~~~~~~l~~~~~~Lkpg 211 (428)
..+..+++-+.++|..|
T Consensus 280 -----e~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 280 -----EKPARVAELMAQWLVNG 296 (357)
T ss_pred -----cCHHHHHHHHHHHHhcC
Confidence 23667777777788766
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=2.2e-05 Score=73.74 Aligned_cols=101 Identities=18% Similarity=-0.030 Sum_probs=76.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHC--CC-CCcEEEEEcccccccCCCceeEEEEec
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKAN--NL-TDKVIVLHGRVEDVEIDEEVDVIISEW 186 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~--~~-~~~v~~~~~d~~~l~~~~~~DlVvs~~ 186 (428)
...++||-||.|.|..+..+.+.. .+|+-||++ .+++.+++.+... ++ ..|++++.. +.+. ..++||+|++..
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~~-~~~~fDVIIvDs 147 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYD-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLDL-DIKKYDLIICLQ 147 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcC-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhhc-cCCcCCEEEEcC
Confidence 456899999999999999999985 499999999 8999998844331 22 356777752 2211 127899999874
Q ss_pred chhhhcchhhHHHHHHHHhcccccCeEEEccCCeee
Q 014247 187 MGYMLLYESMLGSVITARDRWLKRGGLILPSYATLY 222 (428)
Q Consensus 187 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 222 (428)
+ ..+.+.+.+++.|+|||+++....+.+
T Consensus 148 ~--------~~~~fy~~~~~~L~~~Gi~v~Qs~sp~ 175 (262)
T PRK00536 148 E--------PDIHKIDGLKRMLKEDGVFISVAKHPL 175 (262)
T ss_pred C--------CChHHHHHHHHhcCCCcEEEECCCCcc
Confidence 1 236777889999999999997765443
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.08 E-value=4.9e-06 Score=83.01 Aligned_cols=78 Identities=27% Similarity=0.432 Sum_probs=68.0
Q ss_pred hhhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccc
Q 014247 94 RVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVED 172 (428)
Q Consensus 94 ~~r~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 172 (428)
..-.+.+...|.+.+....++.+||+.||||.+++.+|+. +++|+|||++ ..+..|++++..||+++ .+|+++-+++
T Consensus 365 t~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~-~~~ViGvEi~~~aV~dA~~nA~~NgisN-a~Fi~gqaE~ 442 (534)
T KOG2187|consen 365 TSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG-VKRVIGVEISPDAVEDAEKNAQINGISN-ATFIVGQAED 442 (534)
T ss_pred cHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc-ccceeeeecChhhcchhhhcchhcCccc-eeeeecchhh
Confidence 3444566777888888888899999999999999999985 8899999999 99999999999999986 9999997776
Q ss_pred c
Q 014247 173 V 173 (428)
Q Consensus 173 l 173 (428)
+
T Consensus 443 ~ 443 (534)
T KOG2187|consen 443 L 443 (534)
T ss_pred c
Confidence 4
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.06 E-value=5.6e-05 Score=74.65 Aligned_cols=116 Identities=22% Similarity=0.206 Sum_probs=88.0
Q ss_pred hccCCCCCCEEEEEcCCCcHHHHHHHHcCC---CeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC---C-C
Q 014247 106 QNQSFIEGKVVVDVGCGTGILSIFCAQAGA---KRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI---D-E 177 (428)
Q Consensus 106 ~~~~~~~~~~VLDiGcGtG~ls~~la~~g~---~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~---~-~ 177 (428)
..+...+|.+|||+.++.|.=+..+|+... ..|+++|.+ .-+...++++++.|+.+ +.+++.|...++. . +
T Consensus 150 ~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~n-v~~~~~d~~~~~~~~~~~~ 228 (355)
T COG0144 150 LVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRN-VIVVNKDARRLAELLPGGE 228 (355)
T ss_pred HHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCc-eEEEecccccccccccccC
Confidence 456678999999999999998888888632 357999999 88889999999999987 7888888765432 1 3
Q ss_pred ceeEEEEecchhh--hc-----------------chhhHHHHHHHHhcccccCeEEEccCCeee
Q 014247 178 EVDVIISEWMGYM--LL-----------------YESMLGSVITARDRWLKRGGLILPSYATLY 222 (428)
Q Consensus 178 ~~DlVvs~~~~~~--l~-----------------~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 222 (428)
+||.|+.....+. .. ....-.++|....++|||||.|+-+++++.
T Consensus 229 ~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~ 292 (355)
T COG0144 229 KFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLT 292 (355)
T ss_pred cCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCc
Confidence 6999998653211 11 011246678899999999999998887654
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.9e-05 Score=74.90 Aligned_cols=85 Identities=24% Similarity=0.363 Sum_probs=67.8
Q ss_pred HHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC
Q 014247 98 ETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID 176 (428)
Q Consensus 98 ~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~ 176 (428)
....+.|.+.+...++..|||||+|.|.++..+++.+ ++|+++|++ .++...++... ...+++++.+|+.++...
T Consensus 16 ~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~---~~~~~~vi~~D~l~~~~~ 91 (262)
T PF00398_consen 16 PNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFA---SNPNVEVINGDFLKWDLY 91 (262)
T ss_dssp HHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCT---TCSSEEEEES-TTTSCGG
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhh---hcccceeeecchhccccH
Confidence 4556666666666789999999999999999999997 699999999 88877777654 235799999999988765
Q ss_pred C----ceeEEEEec
Q 014247 177 E----EVDVIISEW 186 (428)
Q Consensus 177 ~----~~DlVvs~~ 186 (428)
. ...+|+++.
T Consensus 92 ~~~~~~~~~vv~Nl 105 (262)
T PF00398_consen 92 DLLKNQPLLVVGNL 105 (262)
T ss_dssp GHCSSSEEEEEEEE
T ss_pred HhhcCCceEEEEEe
Confidence 4 667888875
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=98.02 E-value=2.7e-05 Score=75.70 Aligned_cols=118 Identities=15% Similarity=0.174 Sum_probs=75.6
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc--------CCCeEEEEeCh-HHHHHHHHHHHHCCCCCc-EEEEEc
Q 014247 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA--------GAKRVYAVDAS-DIAVQANEVVKANNLTDK-VIVLHG 168 (428)
Q Consensus 99 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~--------g~~~V~giD~s-~~~~~a~~~~~~~~~~~~-v~~~~~ 168 (428)
.+.+.+.+.+...++.+|||-+||+|.+...+.+. ...+++|+|++ .++..|+-++.-++.... ..+..+
T Consensus 33 ~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~ 112 (311)
T PF02384_consen 33 EIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQG 112 (311)
T ss_dssp HHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES
T ss_pred HHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccc
Confidence 45566666666677889999999999998887762 34589999999 888888776655554332 457888
Q ss_pred ccccccC---CCceeEEEEecchhhh--cc----------------hhhHHHHHHHHhcccccCeEEEc
Q 014247 169 RVEDVEI---DEEVDVIISEWMGYML--LY----------------ESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 169 d~~~l~~---~~~~DlVvs~~~~~~l--~~----------------~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
|....+. ..+||+|++++..... .. ...-..++..+.+.|++||++.+
T Consensus 113 d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~ 181 (311)
T PF02384_consen 113 DSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAI 181 (311)
T ss_dssp -TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEE
T ss_pred ccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeE
Confidence 8654333 2689999998742222 00 01112467778899999998754
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=98.02 E-value=2.6e-05 Score=66.61 Aligned_cols=74 Identities=23% Similarity=0.383 Sum_probs=59.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHH-----cCCCeEEEEeCh-HHHHHHHHHHHHCC--CCCcEEEEEcccccccCCCceeEE
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQ-----AGAKRVYAVDAS-DIAVQANEVVKANN--LTDKVIVLHGRVEDVEIDEEVDVI 182 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~-----~g~~~V~giD~s-~~~~~a~~~~~~~~--~~~~v~~~~~d~~~l~~~~~~DlV 182 (428)
.+...|+|+|||.|.++..++. ...-+|+|||.+ ...+.+.++.+..+ +..++.+..+++.+.......+++
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPDIL 103 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCeEE
Confidence 6678999999999999999999 434499999999 88888888887766 555688888877665445667777
Q ss_pred EE
Q 014247 183 IS 184 (428)
Q Consensus 183 vs 184 (428)
+.
T Consensus 104 vg 105 (141)
T PF13679_consen 104 VG 105 (141)
T ss_pred EE
Confidence 75
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.01 E-value=2.8e-05 Score=74.29 Aligned_cols=112 Identities=15% Similarity=0.163 Sum_probs=83.5
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEeCh-HHHHHHHHH--HH---HCCC-CCcEEEEEcccccccC--CCceeE
Q 014247 112 EGKVVVDVGCGTGILSIFCAQAG-AKRVYAVDAS-DIAVQANEV--VK---ANNL-TDKVIVLHGRVEDVEI--DEEVDV 181 (428)
Q Consensus 112 ~~~~VLDiGcGtG~ls~~la~~g-~~~V~giD~s-~~~~~a~~~--~~---~~~~-~~~v~~~~~d~~~l~~--~~~~Dl 181 (428)
...+||-+|.|.|.....+.+.. ..+|+-+|++ +|++.++++ ++ .+.+ ..+++++..|+.++-. .+.||+
T Consensus 289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~ 368 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDV 368 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccE
Confidence 44689999999999999999984 8899999999 999998842 22 2223 3589999999888643 379999
Q ss_pred EEEecchhh--hcchhhHHHHHHHHhcccccCeEEEccCCeeeE
Q 014247 182 IISEWMGYM--LLYESMLGSVITARDRWLKRGGLILPSYATLYM 223 (428)
Q Consensus 182 Vvs~~~~~~--l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~ 223 (428)
||.+..+-- -...-.-.++..-+.+.|+++|+++......|.
T Consensus 369 vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~ 412 (508)
T COG4262 369 VIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYF 412 (508)
T ss_pred EEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCcc
Confidence 998653211 111122456777888999999999988766554
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00016 Score=70.11 Aligned_cols=116 Identities=16% Similarity=0.123 Sum_probs=77.7
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-----CCCeEEEEeCh-HHHHHHHHHHHHCCCCC-cEEEEEcccc
Q 014247 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-----GAKRVYAVDAS-DIAVQANEVVKANNLTD-KVIVLHGRVE 171 (428)
Q Consensus 99 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-----g~~~V~giD~s-~~~~~a~~~~~~~~~~~-~v~~~~~d~~ 171 (428)
.....|...+ .++..++|+|||+|.-+..+.++ ...+++++|+| ++++.+.+.+....+.. .+.-+++|..
T Consensus 65 ~~~~~Ia~~i--~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~ 142 (319)
T TIGR03439 65 KHSSDIAASI--PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYD 142 (319)
T ss_pred HHHHHHHHhc--CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHH
Confidence 4444555554 46679999999999765544432 13479999999 99999888887333332 2344888876
Q ss_pred cc----cC---CCceeEEEEecchhhhcchh--hHHHHHHHHhc-ccccCeEEEccC
Q 014247 172 DV----EI---DEEVDVIISEWMGYMLLYES--MLGSVITARDR-WLKRGGLILPSY 218 (428)
Q Consensus 172 ~l----~~---~~~~DlVvs~~~~~~l~~~~--~~~~~l~~~~~-~LkpgG~lv~~~ 218 (428)
+. +. .....+++. +|+.+.+.. ....+|+.+.+ .|+|||.+++..
T Consensus 143 ~~l~~l~~~~~~~~~r~~~f--lGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 143 DGLAWLKRPENRSRPTTILW--LGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred HHHhhcccccccCCccEEEE--eCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 52 21 234567776 555555543 35677889988 999999998753
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00013 Score=68.62 Aligned_cols=162 Identities=17% Similarity=0.174 Sum_probs=99.9
Q ss_pred hhhHHHHHHHHHhccCCCC-------CCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCC-----
Q 014247 94 RVRTETYRAAIMQNQSFIE-------GKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLT----- 160 (428)
Q Consensus 94 ~~r~~~~~~~i~~~~~~~~-------~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~----- 160 (428)
..|...|...|.+.-...+ ..+||--|||.|.|+..+|..|. ++-|=|+| -|+-...=.+..-..+
T Consensus 125 ~ERd~~ykpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~-~~qGNEfSy~Mli~S~FiLN~~~~~nq~~I 203 (369)
T KOG2798|consen 125 RERDQLYKPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGF-KCQGNEFSYFMLICSSFILNYCKQENQFTI 203 (369)
T ss_pred hhhhhhhhhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcc-cccccHHHHHHHHHHHHHHHhhccCCcEEE
Confidence 4555556555555433333 35899999999999999999998 78888999 7765433222111011
Q ss_pred ----------------------------------CcEEEEEcccccccCC----CceeEEEEecchhhhcchhhHHHHHH
Q 014247 161 ----------------------------------DKVIVLHGRVEDVEID----EEVDVIISEWMGYMLLYESMLGSVIT 202 (428)
Q Consensus 161 ----------------------------------~~v~~~~~d~~~l~~~----~~~DlVvs~~~~~~l~~~~~~~~~l~ 202 (428)
+......||+.+.-.. +.||+|+.++ ++.-....-+.++
T Consensus 204 YPfIh~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcf---FIDTa~NileYi~ 280 (369)
T KOG2798|consen 204 YPFIHQYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCF---FIDTAHNILEYID 280 (369)
T ss_pred EeeeeccccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEE---EeechHHHHHHHH
Confidence 1122233444443221 4699999875 6666667888999
Q ss_pred HHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhhccCCCCcchhHHHHHhcCCCCceEEe
Q 014247 203 ARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAMMPLAKQCAFEEPSVET 266 (428)
Q Consensus 203 ~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~ 266 (428)
.+..+|||||+.+=-.+-+|-..-... ... ...--+..+++..++...||+...-+.
T Consensus 281 tI~~iLk~GGvWiNlGPLlYHF~d~~g--~~~-----~~siEls~edl~~v~~~~GF~~~ke~~ 337 (369)
T KOG2798|consen 281 TIYKILKPGGVWINLGPLLYHFEDTHG--VEN-----EMSIELSLEDLKRVASHRGFEVEKERG 337 (369)
T ss_pred HHHHhccCCcEEEeccceeeeccCCCC--Ccc-----cccccccHHHHHHHHHhcCcEEEEeee
Confidence 999999999998854444442111100 000 001224567888888888998765443
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.92 E-value=6.1e-06 Score=69.97 Aligned_cols=116 Identities=18% Similarity=0.309 Sum_probs=78.5
Q ss_pred HHHHHHHHhccCCCCCCEEEEEcCC-CcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCC--cEEEEEccccc
Q 014247 98 ETYRAAIMQNQSFIEGKVVVDVGCG-TGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTD--KVIVLHGRVED 172 (428)
Q Consensus 98 ~~~~~~i~~~~~~~~~~~VLDiGcG-tG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~--~v~~~~~d~~~ 172 (428)
+++...+.+......|.+||++|.| +|..++++|.. ....|...|-+ ..++..++....|.... ++.++.-+...
T Consensus 15 eala~~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~ 94 (201)
T KOG3201|consen 15 EALAWTILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWG 94 (201)
T ss_pred HHHHHHHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhh
Confidence 3455556666666778999999999 56667777765 56689999999 78877777776663221 23222222221
Q ss_pred ---ccCCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 173 ---VEIDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 173 ---l~~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
.....+||.|++.- +++.......+.+.+.++|+|.|..++
T Consensus 95 aqsq~eq~tFDiIlaAD---ClFfdE~h~sLvdtIk~lL~p~g~Al~ 138 (201)
T KOG3201|consen 95 AQSQQEQHTFDIILAAD---CLFFDEHHESLVDTIKSLLRPSGRALL 138 (201)
T ss_pred hHHHHhhCcccEEEecc---chhHHHHHHHHHHHHHHHhCcccceeE
Confidence 11226899999943 444445578889999999999998654
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.91 E-value=3.7e-05 Score=68.93 Aligned_cols=96 Identities=29% Similarity=0.364 Sum_probs=67.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHc-CC-CeEEEEeChHHHHHHHHHHHHCCCCCcEEEEEcccccccC--------C-Cc
Q 014247 110 FIEGKVVVDVGCGTGILSIFCAQA-GA-KRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDVEI--------D-EE 178 (428)
Q Consensus 110 ~~~~~~VLDiGcGtG~ls~~la~~-g~-~~V~giD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~--------~-~~ 178 (428)
..++.+|+|+|+-.|.++..+++. +. .+|+|+|+.+|-. . .+|.++++|+++-+. . .+
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~----------~-~~V~~iq~d~~~~~~~~~l~~~l~~~~ 111 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP----------I-PGVIFLQGDITDEDTLEKLLEALGGAP 111 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc----------C-CCceEEeeeccCccHHHHHHHHcCCCC
Confidence 356799999999999999999997 32 2499999986631 1 239999999987432 2 45
Q ss_pred eeEEEEecchhhh-----cc---hhhHHHHHHHHhcccccCeEEEc
Q 014247 179 VDVIISEWMGYML-----LY---ESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 179 ~DlVvs~~~~~~l-----~~---~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
+|+|+|......- .+ ......++.-...+|+|||.++.
T Consensus 112 ~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~ 157 (205)
T COG0293 112 VDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVA 157 (205)
T ss_pred cceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEE
Confidence 7999997632111 11 11234445556789999999884
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.90 E-value=2e-05 Score=77.48 Aligned_cols=106 Identities=25% Similarity=0.250 Sum_probs=88.6
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC-CceeEEEEecc
Q 014247 110 FIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID-EEVDVIISEWM 187 (428)
Q Consensus 110 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~-~~~DlVvs~~~ 187 (428)
..++..++|+|||.|....+.+..+...++|++.+ ..+..+.......++.++..++.+|+.+.+++ ..||.+-+.-
T Consensus 108 ~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld- 186 (364)
T KOG1269|consen 108 CFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLE- 186 (364)
T ss_pred CcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEe-
Confidence 36677999999999999999999876699999999 77777777666666777777788888887775 8999999743
Q ss_pred hhhhcchhhHHHHHHHHhcccccCeEEEccC
Q 014247 188 GYMLLYESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 188 ~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
...+.++...++.+++++++|||+++...
T Consensus 187 --~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e 215 (364)
T KOG1269|consen 187 --VVCHAPDLEKVYAEIYRVLKPGGLFIVKE 215 (364)
T ss_pred --ecccCCcHHHHHHHHhcccCCCceEEeHH
Confidence 67788889999999999999999998543
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=97.89 E-value=5.4e-05 Score=68.05 Aligned_cols=118 Identities=15% Similarity=0.153 Sum_probs=84.1
Q ss_pred CEEEEEcCCCcHHHHHHHHcCCCeEEEEeChHHHHHHHHHHHHCCCCCcEEEEEcccccccCC----CceeEEEEecchh
Q 014247 114 KVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDVEID----EEVDVIISEWMGY 189 (428)
Q Consensus 114 ~~VLDiGcGtG~ls~~la~~g~~~V~giD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~----~~~DlVvs~~~~~ 189 (428)
.++|||||=+...... ..+.-.|+.||++.. .-.+.+.|+.+.+++ ++||+|++.++..
T Consensus 53 lrlLEVGals~~N~~s--~~~~fdvt~IDLns~---------------~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLN 115 (219)
T PF11968_consen 53 LRLLEVGALSTDNACS--TSGWFDVTRIDLNSQ---------------HPGILQQDFMERPLPKNESEKFDVISLSLVLN 115 (219)
T ss_pred ceEEeecccCCCCccc--ccCceeeEEeecCCC---------------CCCceeeccccCCCCCCcccceeEEEEEEEEe
Confidence 6999999986554332 233336999999831 134567788777653 7999999998776
Q ss_pred hhcchhhHHHHHHHHhcccccCeE-----EEccCCeeeEeecCCccchhhhhhhhhccCCCCcchhHHHHHhcCCCCceE
Q 014247 190 MLLYESMLGSVITARDRWLKRGGL-----ILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAMMPLAKQCAFEEPSV 264 (428)
Q Consensus 190 ~l~~~~~~~~~l~~~~~~LkpgG~-----lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~ 264 (428)
++......-++++.+.++|+|+|. +++- .|..+ ..+...++.+.|..++...||.....
T Consensus 116 fVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlV------lP~~C----------v~NSRy~~~~~l~~im~~LGf~~~~~ 179 (219)
T PF11968_consen 116 FVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLV------LPLPC----------VTNSRYMTEERLREIMESLGFTRVKY 179 (219)
T ss_pred eCCCHHHHHHHHHHHHHHhCCCCccCcceEEEE------eCchH----------hhcccccCHHHHHHHHHhCCcEEEEE
Confidence 776667788999999999999999 5542 22111 12334467788999999999987554
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=97.88 E-value=1.1e-05 Score=65.12 Aligned_cols=98 Identities=23% Similarity=0.335 Sum_probs=44.3
Q ss_pred EEEcCCCcHHHHHHHHc----CCCeEEEEeChHHHHHHHHHHHHCCCCCcEEEEEcccccc--cCC-CceeEEEEecchh
Q 014247 117 VDVGCGTGILSIFCAQA----GAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDV--EID-EEVDVIISEWMGY 189 (428)
Q Consensus 117 LDiGcGtG~ls~~la~~----g~~~V~giD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~l--~~~-~~~DlVvs~~~~~ 189 (428)
||||+..|..+..+++. +..+++++|..+....+++.++..++.++++++.++..+. ..+ +++|+|+...
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg--- 77 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG--- 77 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC---
Confidence 68999999988877764 2237999999943445566666667777899999998764 122 7999999865
Q ss_pred hhcchhhHHHHHHHHhcccccCeEEEccC
Q 014247 190 MLLYESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 190 ~l~~~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
. +........+..+.+.|+|||++++.+
T Consensus 78 ~-H~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 78 D-HSYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ----HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred C-CCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 1 112335666788889999999998754
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.88 E-value=3.9e-06 Score=73.99 Aligned_cols=138 Identities=20% Similarity=0.252 Sum_probs=84.9
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEEecchhh
Q 014247 112 EGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWMGYM 190 (428)
Q Consensus 112 ~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~~~~~~ 190 (428)
.+.++||+|+|.|-.+..++.. +.+|++.|.| .|....+++ +. .++. .++-...+-++|+|.|-. .
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~-feevyATElS~tMr~rL~kk----~y----nVl~-~~ew~~t~~k~dli~clN---l 178 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPT-FEEVYATELSWTMRDRLKKK----NY----NVLT-EIEWLQTDVKLDLILCLN---L 178 (288)
T ss_pred CCeeEEeccCCCcchhhhhcch-HHHHHHHHhhHHHHHHHhhc----CC----ceee-ehhhhhcCceeehHHHHH---H
Confidence 3479999999999999999886 6789999999 887665443 22 2221 112222235799999843 5
Q ss_pred hcchhhHHHHHHHHhccccc-CeEEEccCCeeeEeecC--CccchhhhhhhhhccCCCC----cchhHHHHHhcCCCCce
Q 014247 191 LLYESMLGSVITARDRWLKR-GGLILPSYATLYMAPVT--HPDRYSESIDFWRNVYGID----MSAMMPLAKQCAFEEPS 263 (428)
Q Consensus 191 l~~~~~~~~~l~~~~~~Lkp-gG~lv~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~----~~~l~~~l~~~Gf~~~~ 263 (428)
+..-.++-++|+.+..+|+| .|++|++-.-.+.--++ ...++...-... +..|-+ ...+.+++++|||....
T Consensus 179 LDRc~~p~kLL~Di~~vl~psngrvivaLVLP~~hYVE~N~~g~~~rPdn~L-e~~Gr~~ee~v~~~~e~lr~~g~~vea 257 (288)
T KOG3987|consen 179 LDRCFDPFKLLEDIHLVLAPSNGRVIVALVLPYMHYVETNTSGLPLRPDNLL-ENNGRSFEEEVARFMELLRNCGYRVEA 257 (288)
T ss_pred HHhhcChHHHHHHHHHHhccCCCcEEEEEEecccceeecCCCCCcCCchHHH-HhcCccHHHHHHHHHHHHHhcCchhhh
Confidence 65556788999999999999 88777553222211111 111111100011 112222 34577889999997643
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00015 Score=69.06 Aligned_cols=107 Identities=14% Similarity=0.080 Sum_probs=65.6
Q ss_pred HHHhccCCCCCCEEEEEcCCCcHHHHHHHHc--CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCce
Q 014247 103 AIMQNQSFIEGKVVVDVGCGTGILSIFCAQA--GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEV 179 (428)
Q Consensus 103 ~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~ 179 (428)
.+...+......+|||+|||.|.....+... ...+++++|.| .|.+.++..++................+...-.+.
T Consensus 24 El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (274)
T PF09243_consen 24 ELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFPPD 103 (274)
T ss_pred HHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCCCC
Confidence 3333344567789999999999766555543 35689999999 99999888776542211111111111111111344
Q ss_pred eEEEEecchhhhcchhhHHHHHHHHhccccc
Q 014247 180 DVIISEWMGYMLLYESMLGSVITARDRWLKR 210 (428)
Q Consensus 180 DlVvs~~~~~~l~~~~~~~~~l~~~~~~Lkp 210 (428)
|+|++..+..-+.. .....+++.+...+.+
T Consensus 104 DLvi~s~~L~EL~~-~~r~~lv~~LW~~~~~ 133 (274)
T PF09243_consen 104 DLVIASYVLNELPS-AARAELVRSLWNKTAP 133 (274)
T ss_pred cEEEEehhhhcCCc-hHHHHHHHHHHHhccC
Confidence 99998764444444 4567777777776665
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00012 Score=70.11 Aligned_cols=114 Identities=18% Similarity=0.213 Sum_probs=85.9
Q ss_pred ccCCCCCCEEEEEcCCCcHHHHHHHHc--CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc---CCCcee
Q 014247 107 NQSFIEGKVVVDVGCGTGILSIFCAQA--GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE---IDEEVD 180 (428)
Q Consensus 107 ~~~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~---~~~~~D 180 (428)
.+...++..|||+.++.|.=+..++.. +...|++.|++ .-+...++++++.|..+ +.++..|..... ....||
T Consensus 80 ~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~-v~~~~~D~~~~~~~~~~~~fd 158 (283)
T PF01189_consen 80 ALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFN-VIVINADARKLDPKKPESKFD 158 (283)
T ss_dssp HHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SS-EEEEESHHHHHHHHHHTTTEE
T ss_pred cccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCce-EEEEeeccccccccccccccc
Confidence 345678999999999999988888886 24699999999 88888899999998876 777778887762 224699
Q ss_pred EEEEecchhhh---cch---------h-------hHHHHHHHHhccc----ccCeEEEccCCee
Q 014247 181 VIISEWMGYML---LYE---------S-------MLGSVITARDRWL----KRGGLILPSYATL 221 (428)
Q Consensus 181 lVvs~~~~~~l---~~~---------~-------~~~~~l~~~~~~L----kpgG~lv~~~~~~ 221 (428)
.|+.+...+.. ... . .-.++|+.+.+++ ||||+++.+++++
T Consensus 159 ~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~ 222 (283)
T PF01189_consen 159 RVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSL 222 (283)
T ss_dssp EEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHH
T ss_pred hhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccH
Confidence 99996532211 100 1 1356788899999 9999999877654
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0002 Score=60.73 Aligned_cols=98 Identities=28% Similarity=0.371 Sum_probs=66.5
Q ss_pred EEEEcCCCcHHHHHHHHcCC--CeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccc--ccCCC--ceeEEEEecch
Q 014247 116 VVDVGCGTGILSIFCAQAGA--KRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVED--VEIDE--EVDVIISEWMG 188 (428)
Q Consensus 116 VLDiGcGtG~ls~~la~~g~--~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~--l~~~~--~~DlVvs~~~~ 188 (428)
+||+|||+|... .++.... ..++++|++ .++..++......+.. .+.+..++... +++.. .||++.+..
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-- 127 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLG-LVDFVVADALGGVLPFEDSASFDLVISLL-- 127 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCC-ceEEEEeccccCCCCCCCCCceeEEeeee--
Confidence 999999999976 4444322 379999999 7777744443221111 16788888776 55554 799994322
Q ss_pred hhhcchhhHHHHHHHHhcccccCeEEEccCC
Q 014247 189 YMLLYESMLGSVITARDRWLKRGGLILPSYA 219 (428)
Q Consensus 189 ~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 219 (428)
...+.. ....+..+.+.|+|+|.+++...
T Consensus 128 -~~~~~~-~~~~~~~~~~~l~~~g~~~~~~~ 156 (257)
T COG0500 128 -VLHLLP-PAKALRELLRVLKPGGRLVLSDL 156 (257)
T ss_pred -ehhcCC-HHHHHHHHHHhcCCCcEEEEEec
Confidence 222222 78889999999999999887644
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=97.80 E-value=7e-05 Score=63.85 Aligned_cols=58 Identities=41% Similarity=0.559 Sum_probs=50.2
Q ss_pred EEEEEcCCCcHHHHHHHHcCCC-eEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccc
Q 014247 115 VVVDVGCGTGILSIFCAQAGAK-RVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDV 173 (428)
Q Consensus 115 ~VLDiGcGtG~ls~~la~~g~~-~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l 173 (428)
+|||||||.|.++..+++.+.+ +|+++|++ .+...++++++.+++.+ +.+++..+.+-
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~-v~~~~~al~~~ 60 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPN-VVLLNAAVGDR 60 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCc-EEEEEeeeeCC
Confidence 4899999999999999998654 89999999 99999999999988864 88888776653
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00026 Score=63.97 Aligned_cols=112 Identities=23% Similarity=0.282 Sum_probs=75.7
Q ss_pred HHHHHHHHhc---cCCCCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccc
Q 014247 98 ETYRAAIMQN---QSFIEGKVVVDVGCGTGILSIFCAQA-G-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVE 171 (428)
Q Consensus 98 ~~~~~~i~~~---~~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~ 171 (428)
..+..+|..- +...+|.+||-+|+.+|.....++.. | -..|+|+|.| .........+++. .+|--+-.|++
T Consensus 56 SKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R---~NIiPIl~DAr 132 (229)
T PF01269_consen 56 SKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR---PNIIPILEDAR 132 (229)
T ss_dssp -HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS---TTEEEEES-TT
T ss_pred hHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC---CceeeeeccCC
Confidence 3566666554 34678999999999999998888886 4 4589999999 6655555554443 35777778887
Q ss_pred ccc----CCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 172 DVE----IDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 172 ~l~----~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
.-. +-+.+|+|+++. .......-++..+..+||+||.+++.
T Consensus 133 ~P~~Y~~lv~~VDvI~~DV-----aQp~Qa~I~~~Na~~fLk~gG~~~i~ 177 (229)
T PF01269_consen 133 HPEKYRMLVEMVDVIFQDV-----AQPDQARIAALNARHFLKPGGHLIIS 177 (229)
T ss_dssp SGGGGTTTS--EEEEEEE------SSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ChHHhhcccccccEEEecC-----CChHHHHHHHHHHHhhccCCcEEEEE
Confidence 532 127899999964 23344677788888999999988864
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00077 Score=60.68 Aligned_cols=100 Identities=25% Similarity=0.336 Sum_probs=79.0
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccc-ccCCCceeEEEEecc
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVED-VEIDEEVDVIISEWM 187 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~-l~~~~~~DlVvs~~~ 187 (428)
..+.++.||||--|.+..++.+. .+..+++.|++ .-++.|.+++..+++.+++++..+|... +.....+|+|+...|
T Consensus 15 ~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGM 94 (226)
T COG2384 15 KQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGM 94 (226)
T ss_pred HcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCC
Confidence 34556999999999999999997 46689999999 8899999999999999999999999743 333468999999877
Q ss_pred hhhhcchhhHHHHHHHHhcccccCeEEE
Q 014247 188 GYMLLYESMLGSVITARDRWLKRGGLIL 215 (428)
Q Consensus 188 ~~~l~~~~~~~~~l~~~~~~LkpgG~lv 215 (428)
|..+ ...+|.+-...|+.=-+++
T Consensus 95 GG~l-----I~~ILee~~~~l~~~~rlI 117 (226)
T COG2384 95 GGTL-----IREILEEGKEKLKGVERLI 117 (226)
T ss_pred cHHH-----HHHHHHHhhhhhcCcceEE
Confidence 6444 6667777766666433444
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00012 Score=67.58 Aligned_cols=85 Identities=19% Similarity=0.241 Sum_probs=65.6
Q ss_pred HHHHhccCCCCCC--EEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHC------C--CCCcEEEEEccc
Q 014247 102 AAIMQNQSFIEGK--VVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKAN------N--LTDKVIVLHGRV 170 (428)
Q Consensus 102 ~~i~~~~~~~~~~--~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~------~--~~~~v~~~~~d~ 170 (428)
+.|.+.+...++. +|||+-+|+|..++.++..|+ +|+++|.+ .+....++.++.. + +..+++++++|.
T Consensus 76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G~-~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da 154 (250)
T PRK10742 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS 154 (250)
T ss_pred cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcH
Confidence 4455556666777 999999999999999999999 49999999 7766666666652 1 225799999998
Q ss_pred cccc--CCCceeEEEEecc
Q 014247 171 EDVE--IDEEVDVIISEWM 187 (428)
Q Consensus 171 ~~l~--~~~~~DlVvs~~~ 187 (428)
.++- ....||+|+..+|
T Consensus 155 ~~~L~~~~~~fDVVYlDPM 173 (250)
T PRK10742 155 LTALTDITPRPQVVYLDPM 173 (250)
T ss_pred HHHHhhCCCCCcEEEECCC
Confidence 7652 2357999999884
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00031 Score=66.96 Aligned_cols=89 Identities=21% Similarity=0.205 Sum_probs=54.4
Q ss_pred HHHHHHHhccCCCC-----CCEEEEEcCCCc-HHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHC-CCCCcEEEEEcc
Q 014247 99 TYRAAIMQNQSFIE-----GKVVVDVGCGTG-ILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKAN-NLTDKVIVLHGR 169 (428)
Q Consensus 99 ~~~~~i~~~~~~~~-----~~~VLDiGcGtG-~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~-~~~~~v~~~~~d 169 (428)
.|..+|...+.... ..++||||||.. +..+..++. |. +++|.|++ ..++.|++++..| ++.++|+++...
T Consensus 84 nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W-~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~ 162 (299)
T PF05971_consen 84 NYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGW-SFVATDIDPKSLESARENVERNPNLESRIELRKQK 162 (299)
T ss_dssp HHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--
T ss_pred HHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCC-eEEEecCCHHHHHHHHHHHHhccccccceEEEEcC
Confidence 34555555543222 458999999976 456666554 66 99999999 9999999999999 999999998764
Q ss_pred ccc-c----c-CCCceeEEEEecch
Q 014247 170 VED-V----E-IDEEVDVIISEWMG 188 (428)
Q Consensus 170 ~~~-l----~-~~~~~DlVvs~~~~ 188 (428)
-.. + . ..+.||+.+|++..
T Consensus 163 ~~~~i~~~i~~~~e~~dftmCNPPF 187 (299)
T PF05971_consen 163 NPDNIFDGIIQPNERFDFTMCNPPF 187 (299)
T ss_dssp ST-SSTTTSTT--S-EEEEEE----
T ss_pred CccccchhhhcccceeeEEecCCcc
Confidence 322 1 1 12789999999843
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00013 Score=70.02 Aligned_cols=95 Identities=19% Similarity=0.198 Sum_probs=74.2
Q ss_pred CEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEEecchhhhc
Q 014247 114 KVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWMGYMLL 192 (428)
Q Consensus 114 ~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~~~~~~l~ 192 (428)
...+|+|.|.|..+..+... +.+|-++++. +.+..++.... .| |+.+.+|+.+- . .+-|+|+..| +++
T Consensus 179 ~~avDvGgGiG~v~k~ll~~-fp~ik~infdlp~v~~~a~~~~-~g----V~~v~gdmfq~-~-P~~daI~mkW---iLh 247 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSK-YPHIKGINFDLPFVLAAAPYLA-PG----VEHVAGDMFQD-T-PKGDAIWMKW---ILH 247 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHh-CCCCceeecCHHHHHhhhhhhc-CC----cceeccccccc-C-CCcCeEEEEe---ecc
Confidence 78999999999999888885 5589999999 77766655543 32 78888887665 3 2457999988 555
Q ss_pred ch--hhHHHHHHHHhcccccCeEEEccCC
Q 014247 193 YE--SMLGSVITARDRWLKRGGLILPSYA 219 (428)
Q Consensus 193 ~~--~~~~~~l~~~~~~LkpgG~lv~~~~ 219 (428)
+. .+..++|++++..|+|||.+++-..
T Consensus 248 dwtDedcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 248 DWTDEDCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred cCChHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 54 4588999999999999998886543
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00021 Score=74.65 Aligned_cols=75 Identities=16% Similarity=0.205 Sum_probs=53.4
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcC---------CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccc------cC
Q 014247 112 EGKVVVDVGCGTGILSIFCAQAG---------AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDV------EI 175 (428)
Q Consensus 112 ~~~~VLDiGcGtG~ls~~la~~g---------~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l------~~ 175 (428)
...+|||.|||+|.+...+++.. ...++|+|++ ..+..++.++...+. ..+.+.+.|.... ..
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~-~~~~i~~~d~l~~~~~~~~~~ 109 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL-LEINVINFNSLSYVLLNIESY 109 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC-CCceeeecccccccccccccc
Confidence 45699999999999988887642 1378999999 888888888766541 1245555553321 11
Q ss_pred CCceeEEEEecc
Q 014247 176 DEEVDVIISEWM 187 (428)
Q Consensus 176 ~~~~DlVvs~~~ 187 (428)
.++||+|++++.
T Consensus 110 ~~~fD~IIgNPP 121 (524)
T TIGR02987 110 LDLFDIVITNPP 121 (524)
T ss_pred cCcccEEEeCCC
Confidence 268999999984
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0006 Score=60.88 Aligned_cols=100 Identities=27% Similarity=0.327 Sum_probs=77.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCC--CCcEEEEEccccccc---CCCceeEEEE
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNL--TDKVIVLHGRVEDVE---IDEEVDVIIS 184 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~--~~~v~~~~~d~~~l~---~~~~~DlVvs 184 (428)
.+|.+||.||-|.|+..-.+.++...+=+.||.. ...+..+ .+|+ .++|.++.+..++.. .++.||-|+-
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr----~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~y 175 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMR----DWGWREKENVIILEGRWEDVLNTLPDKHFDGIYY 175 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHH----hcccccccceEEEecchHhhhccccccCcceeEe
Confidence 7889999999999999999988877778889999 7765544 4454 356888888776642 2377999997
Q ss_pred ecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 185 EWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 185 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
.. +-.+-.++..+.+.+.++|||+|++-..
T Consensus 176 DT---y~e~yEdl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 176 DT---YSELYEDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred ec---hhhHHHHHHHHHHHHhhhcCCCceEEEe
Confidence 65 4445567888999999999999988643
|
|
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.58 E-value=4.8e-05 Score=67.95 Aligned_cols=74 Identities=24% Similarity=0.315 Sum_probs=61.9
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc----CC-CceeEEEEe
Q 014247 112 EGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE----ID-EEVDVIISE 185 (428)
Q Consensus 112 ~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~----~~-~~~DlVvs~ 185 (428)
...+|+|.-||-|..+...|..++ .|++||++ .-+..|+++++-.|..++|+|++||+.++- +. ..+|+|+..
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~s 172 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLS 172 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecC
Confidence 556899999999999888888877 89999999 788999999999999999999999988753 22 446677754
Q ss_pred c
Q 014247 186 W 186 (428)
Q Consensus 186 ~ 186 (428)
+
T Consensus 173 p 173 (263)
T KOG2730|consen 173 P 173 (263)
T ss_pred C
Confidence 3
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00061 Score=68.16 Aligned_cols=112 Identities=16% Similarity=0.293 Sum_probs=79.3
Q ss_pred HHHHHhccCCCCCC-EEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC-C
Q 014247 101 RAAIMQNQSFIEGK-VVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID-E 177 (428)
Q Consensus 101 ~~~i~~~~~~~~~~-~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~-~ 177 (428)
...|..++ .+-. ++|-+|||.-.++..+-+.|...|+.+|.| ..++.+...-. .-..-..+...|+..+.++ +
T Consensus 38 ~~~i~~~~--~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~--~~~~~~~~~~~d~~~l~fedE 113 (482)
T KOG2352|consen 38 SGSIMKYL--SPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNA--KERPEMQMVEMDMDQLVFEDE 113 (482)
T ss_pred HHHHHHhh--chhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccc--cCCcceEEEEecchhccCCCc
Confidence 33444443 3334 999999999999999999999999999999 44444333221 1123478999999998886 8
Q ss_pred ceeEEEEec-chhhhcchh------hHHHHHHHHhcccccCeEEEc
Q 014247 178 EVDVIISEW-MGYMLLYES------MLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 178 ~~DlVvs~~-~~~~l~~~~------~~~~~l~~~~~~LkpgG~lv~ 216 (428)
+||+|+... +...+..+. .....+.++.++|++||+.+.
T Consensus 114 SFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~s 159 (482)
T KOG2352|consen 114 SFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYIS 159 (482)
T ss_pred ceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEE
Confidence 999999865 333333322 234568889999999998763
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00036 Score=61.27 Aligned_cols=147 Identities=19% Similarity=0.212 Sum_probs=93.1
Q ss_pred HhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCC-eEEEEeChHHHHHH-------HHHHHHCCCCCcEEEEEcccccccC
Q 014247 105 MQNQSFIEGKVVVDVGCGTGILSIFCAQA-GAK-RVYAVDASDIAVQA-------NEVVKANNLTDKVIVLHGRVEDVEI 175 (428)
Q Consensus 105 ~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~-~V~giD~s~~~~~a-------~~~~~~~~~~~~v~~~~~d~~~l~~ 175 (428)
+......++.+|+|+=.|.|.++..++.. |++ .|++.-..+....+ ....++.... +++.+-.+...+..
T Consensus 41 L~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~a-N~e~~~~~~~A~~~ 119 (238)
T COG4798 41 LAFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYA-NVEVIGKPLVALGA 119 (238)
T ss_pred eEEeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhh-hhhhhCCcccccCC
Confidence 34556789999999999999999999887 433 78877655331111 1112222222 36777777777776
Q ss_pred CCceeEEEEecchhhh----cchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhhccCCCCcchhH
Q 014247 176 DEEVDVIISEWMGYML----LYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAMM 251 (428)
Q Consensus 176 ~~~~DlVvs~~~~~~l----~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 251 (428)
+++.|++......+.+ .+......+..++.+.|||||++++.+-... +-.. . .+ -.....++.....
T Consensus 120 pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~--pG~~--~-~d----t~~~~ri~~a~V~ 190 (238)
T COG4798 120 PQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRAD--PGSG--L-SD----TITLHRIDPAVVI 190 (238)
T ss_pred CCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEecccc--CCCC--h-hh----hhhhcccChHHHH
Confidence 6888888875433222 2345578889999999999998876543211 1000 0 00 1123456777778
Q ss_pred HHHHhcCCCC
Q 014247 252 PLAKQCAFEE 261 (428)
Q Consensus 252 ~~l~~~Gf~~ 261 (428)
...+++||..
T Consensus 191 a~veaaGFkl 200 (238)
T COG4798 191 AEVEAAGFKL 200 (238)
T ss_pred HHHHhhccee
Confidence 8888899964
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0014 Score=61.91 Aligned_cols=103 Identities=21% Similarity=0.270 Sum_probs=64.2
Q ss_pred CCEEEEEcCCCcHH-HHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHH-HCCCCCcEEEEEcccccccCC-CceeEEEEec
Q 014247 113 GKVVVDVGCGTGIL-SIFCAQA-G-AKRVYAVDAS-DIAVQANEVVK-ANNLTDKVIVLHGRVEDVEID-EEVDVIISEW 186 (428)
Q Consensus 113 ~~~VLDiGcGtG~l-s~~la~~-g-~~~V~giD~s-~~~~~a~~~~~-~~~~~~~v~~~~~d~~~l~~~-~~~DlVvs~~ 186 (428)
..+|+=||||.=.+ ++.+++. + ...|+++|++ ..++.+++.+. ..++..++.|+.+|..+...+ ..||+|+...
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa 200 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA 200 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence 35999999997554 4555543 3 2379999999 88999998887 567888999999999887654 7899998754
Q ss_pred chhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 187 MGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 187 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
+ +......-.+++..+.+.++||++++..
T Consensus 201 l--Vg~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 201 L--VGMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp T---S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred h--cccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 1 2212335788999999999999998864
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00088 Score=54.73 Aligned_cols=72 Identities=19% Similarity=0.300 Sum_probs=55.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC-CceeEEEEec
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID-EEVDVIISEW 186 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~-~~~DlVvs~~ 186 (428)
.++++|+|||++.|..+++++-.||++|+++|++ .+....+++.+.+..-++..-.. +++.. +.||+.+...
T Consensus 27 vk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~----eW~~~Y~~~Di~~iDC 100 (156)
T PHA01634 27 VYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMKG----EWNGEYEDVDIFVMDC 100 (156)
T ss_pred ecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhheeeeceeecc----cccccCCCcceEEEEc
Confidence 6789999999999999999999999999999999 88888888877764433222111 23323 7889887643
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0001 Score=68.70 Aligned_cols=96 Identities=21% Similarity=0.147 Sum_probs=72.0
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC-CceeEEEEecch
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID-EEVDVIISEWMG 188 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~-~~~DlVvs~~~~ 188 (428)
..+..+||+|||.|-... ......++|+|.+ ..+..+++. +...+..+|+.+++.. .+||.+++..+.
T Consensus 44 ~~gsv~~d~gCGngky~~---~~p~~~~ig~D~c~~l~~~ak~~-------~~~~~~~ad~l~~p~~~~s~d~~lsiavi 113 (293)
T KOG1331|consen 44 PTGSVGLDVGCGNGKYLG---VNPLCLIIGCDLCTGLLGGAKRS-------GGDNVCRADALKLPFREESFDAALSIAVI 113 (293)
T ss_pred CCcceeeecccCCcccCc---CCCcceeeecchhhhhccccccC-------CCceeehhhhhcCCCCCCccccchhhhhh
Confidence 458899999999986542 1123368999999 887766543 1125677899888875 899999987655
Q ss_pred hhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 189 YMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 189 ~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
+.+....-...+++++.+.|+|||..++
T Consensus 114 hhlsT~~RR~~~l~e~~r~lrpgg~~lv 141 (293)
T KOG1331|consen 114 HHLSTRERRERALEELLRVLRPGGNALV 141 (293)
T ss_pred hhhhhHHHHHHHHHHHHHHhcCCCceEE
Confidence 5555556678899999999999998764
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0016 Score=57.79 Aligned_cols=112 Identities=23% Similarity=0.328 Sum_probs=79.7
Q ss_pred HHHHHHHHhcc---CCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccc
Q 014247 98 ETYRAAIMQNQ---SFIEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVED 172 (428)
Q Consensus 98 ~~~~~~i~~~~---~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 172 (428)
..+..+|..-+ ...+|.+||=+|+.+|.....++.- |...|+|||.| .........+++. +++--+.+|+..
T Consensus 59 SKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R---~Ni~PIL~DA~~ 135 (231)
T COG1889 59 SKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR---PNIIPILEDARK 135 (231)
T ss_pred hHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC---CCceeeecccCC
Confidence 35566666543 4678999999999999998888886 66689999999 6655554444432 357777788765
Q ss_pred ccC----CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 173 VEI----DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 173 l~~----~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
-.. -+.+|+|+... -.....+-+...+..+||+||.+++.
T Consensus 136 P~~Y~~~Ve~VDviy~DV-----AQp~Qa~I~~~Na~~FLk~~G~~~i~ 179 (231)
T COG1889 136 PEKYRHLVEKVDVIYQDV-----AQPNQAEILADNAEFFLKKGGYVVIA 179 (231)
T ss_pred cHHhhhhcccccEEEEec-----CCchHHHHHHHHHHHhcccCCeEEEE
Confidence 321 27799999864 12334566778889999999976643
|
|
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.002 Score=63.19 Aligned_cols=115 Identities=13% Similarity=0.162 Sum_probs=85.2
Q ss_pred ccCCCCCCEEEEEcCCCcHHHHHHHHc--CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc---CCCcee
Q 014247 107 NQSFIEGKVVVDVGCGTGILSIFCAQA--GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE---IDEEVD 180 (428)
Q Consensus 107 ~~~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~---~~~~~D 180 (428)
.+...+|.+|||+.+..|.=+.++|.. +-..|+|.|.+ +-+...+.++.+.|..+ ..+.+.|..+++ ++++||
T Consensus 236 aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~n-tiv~n~D~~ef~~~~~~~~fD 314 (460)
T KOG1122|consen 236 ALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTN-TIVSNYDGREFPEKEFPGSFD 314 (460)
T ss_pred ecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCc-eEEEccCcccccccccCcccc
Confidence 345678999999999999877776664 45579999999 88888899999999876 666777776554 235899
Q ss_pred EEEEecchhh--hc-----------------chhhHHHHHHHHhcccccCeEEEccCCeee
Q 014247 181 VIISEWMGYM--LL-----------------YESMLGSVITARDRWLKRGGLILPSYATLY 222 (428)
Q Consensus 181 lVvs~~~~~~--l~-----------------~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 222 (428)
-|+.....+. +. +.....++|..+..++++||+|+-+++++.
T Consensus 315 RVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~ 375 (460)
T KOG1122|consen 315 RVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSIT 375 (460)
T ss_pred eeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecc
Confidence 9987543222 11 112245677778899999999998887654
|
|
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0016 Score=64.72 Aligned_cols=99 Identities=23% Similarity=0.250 Sum_probs=76.4
Q ss_pred CCCEEEEEcCCCcHHHHHHHHc--CCCeEEEEeCh-HHHHHHHHHHHHCCCCC-cEEEEEccccccc--CCCceeEEEEe
Q 014247 112 EGKVVVDVGCGTGILSIFCAQA--GAKRVYAVDAS-DIAVQANEVVKANNLTD-KVIVLHGRVEDVE--IDEEVDVIISE 185 (428)
Q Consensus 112 ~~~~VLDiGcGtG~ls~~la~~--g~~~V~giD~s-~~~~~a~~~~~~~~~~~-~v~~~~~d~~~l~--~~~~~DlVvs~ 185 (428)
.+.+|||.=+|+|.=++..++. +..+|++-|+| +.++..+++++.|++.+ ++++.+.|+..+- ....||+|=.+
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlD 128 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLD 128 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE-
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeC
Confidence 3469999999999988887776 67799999999 99999999999999988 7999999988764 45899999987
Q ss_pred cchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 186 WMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 186 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
++| .+..+++.+.+.++.||.|.++
T Consensus 129 PfG-------Sp~pfldsA~~~v~~gGll~vT 153 (377)
T PF02005_consen 129 PFG-------SPAPFLDSALQAVKDGGLLCVT 153 (377)
T ss_dssp -SS---------HHHHHHHHHHEEEEEEEEEE
T ss_pred CCC-------CccHhHHHHHHHhhcCCEEEEe
Confidence 744 3566778888889999999865
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0025 Score=53.73 Aligned_cols=80 Identities=26% Similarity=0.353 Sum_probs=57.6
Q ss_pred eEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC--CC-ceeEEEEecchhhhcch-------hhHHHHHHHHh
Q 014247 137 RVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI--DE-EVDVIISEWMGYMLLYE-------SMLGSVITARD 205 (428)
Q Consensus 137 ~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~--~~-~~DlVvs~~~~~~l~~~-------~~~~~~l~~~~ 205 (428)
+|+|+|+- ..++.+++++++.++.+++++++.+-+++.. +. ++|+++-++ ||.-... ..--.+++++.
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNL-GYLPggDk~i~T~~~TTl~Al~~al 79 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNL-GYLPGGDKSITTKPETTLKALEAAL 79 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEE-SB-CTS-TTSB--HHHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEEC-CcCCCCCCCCCcCcHHHHHHHHHHH
Confidence 69999999 9999999999999998899999988777653 34 899999875 4332221 12345577778
Q ss_pred cccccCeEEEcc
Q 014247 206 RWLKRGGLILPS 217 (428)
Q Consensus 206 ~~LkpgG~lv~~ 217 (428)
++|+|||++++.
T Consensus 80 ~lL~~gG~i~iv 91 (140)
T PF06962_consen 80 ELLKPGGIITIV 91 (140)
T ss_dssp HHEEEEEEEEEE
T ss_pred HhhccCCEEEEE
Confidence 899999998863
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0017 Score=54.45 Aligned_cols=105 Identities=11% Similarity=0.087 Sum_probs=75.8
Q ss_pred hccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEE
Q 014247 106 QNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIIS 184 (428)
Q Consensus 106 ~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs 184 (428)
..+...+..+.+|+|.|.|...+.+++.|....+|+|++ -++..++-..-+.+......|...|+-+.++. .|.-|+.
T Consensus 66 Sll~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~-dy~~vvi 144 (199)
T KOG4058|consen 66 SLLRGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLR-DYRNVVI 144 (199)
T ss_pred HHccCCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcccc-ccceEEE
Confidence 344445556899999999999999999997789999999 67777777777788888899999998877663 3443332
Q ss_pred ecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 185 EWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 185 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
+..+..+..+-.++..-|..+..++-+
T Consensus 145 ------Fgaes~m~dLe~KL~~E~p~nt~vvac 171 (199)
T KOG4058|consen 145 ------FGAESVMPDLEDKLRTELPANTRVVAC 171 (199)
T ss_pred ------eehHHHHhhhHHHHHhhCcCCCeEEEE
Confidence 122334455555666567777777743
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.004 Score=58.33 Aligned_cols=122 Identities=16% Similarity=0.136 Sum_probs=69.8
Q ss_pred HHHHHHHHHhccCCC-CCCEEEEEcCCCc--HHHHHHHHc--CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccc
Q 014247 97 TETYRAAIMQNQSFI-EGKVVVDVGCGTG--ILSIFCAQA--GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRV 170 (428)
Q Consensus 97 ~~~~~~~i~~~~~~~-~~~~VLDiGcGtG--~ls~~la~~--g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~ 170 (428)
++.|.....+.+... .=...||||||-- ...-.+|+. ...+|+-+|.+ -.+..++..+..+.- .+..++++|+
T Consensus 52 nR~Fl~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~ 130 (267)
T PF04672_consen 52 NRAFLRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQADL 130 (267)
T ss_dssp HHHHHHHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--T
T ss_pred HHHHHHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCC
Confidence 334444444443323 3358999999942 344555553 44599999999 566668877766532 3489999998
Q ss_pred ccc-------------cCCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCe
Q 014247 171 EDV-------------EIDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYAT 220 (428)
Q Consensus 171 ~~l-------------~~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 220 (428)
.+. ++..++-+++... .+++....++..+++.+...|.||..|+++..+
T Consensus 131 r~p~~iL~~p~~~~~lD~~rPVavll~~v-Lh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t 192 (267)
T PF04672_consen 131 RDPEAILAHPEVRGLLDFDRPVAVLLVAV-LHFVPDDDDPAGIVARLRDALAPGSYLAISHAT 192 (267)
T ss_dssp T-HHHHHCSHHHHCC--TTS--EEEECT--GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB
T ss_pred CCHHHHhcCHHHHhcCCCCCCeeeeeeee-eccCCCccCHHHHHHHHHHhCCCCceEEEEecC
Confidence 873 2235555665543 345555567999999999999999999987653
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.043 Score=50.47 Aligned_cols=106 Identities=22% Similarity=0.200 Sum_probs=63.5
Q ss_pred HHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccc-cCC--C
Q 014247 103 AIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDV-EID--E 177 (428)
Q Consensus 103 ~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l-~~~--~ 177 (428)
.+........|++||-+|-+- ..|+.+|.. ..++|+.+|++ .+++...+.+++.|+. |+.+..|+++- |.. +
T Consensus 35 ~~~~~~gdL~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~--i~~~~~DlR~~LP~~~~~ 111 (243)
T PF01861_consen 35 ALMAERGDLEGKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP--IEAVHYDLRDPLPEELRG 111 (243)
T ss_dssp HHHHHTT-STT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS---TTTSS
T ss_pred HHHHhcCcccCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc--eEEEEecccccCCHHHhc
Confidence 333344457899999999776 455555543 46799999999 9999999999999885 99999998873 332 8
Q ss_pred ceeEEEEecchhhhcchhhHHHHHHHHhcccccCe-EEE
Q 014247 178 EVDVIISEWMGYMLLYESMLGSVITARDRWLKRGG-LIL 215 (428)
Q Consensus 178 ~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG-~lv 215 (428)
+||++++++.-. ..-+..++.+....||..| ..+
T Consensus 112 ~fD~f~TDPPyT----~~G~~LFlsRgi~~Lk~~g~~gy 146 (243)
T PF01861_consen 112 KFDVFFTDPPYT----PEGLKLFLSRGIEALKGEGCAGY 146 (243)
T ss_dssp -BSEEEE---SS----HHHHHHHHHHHHHTB-STT-EEE
T ss_pred CCCEEEeCCCCC----HHHHHHHHHHHHHHhCCCCceEE
Confidence 999999987321 1336777888888887655 443
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0076 Score=57.89 Aligned_cols=84 Identities=15% Similarity=0.222 Sum_probs=66.5
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC---
Q 014247 101 RAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI--- 175 (428)
Q Consensus 101 ~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~--- 175 (428)
.+.+.+.+...++..++|.-||.|..+..+++. +..+|+|+|.+ .++..|++.+... .+++++++++..++..
T Consensus 9 l~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~--~~R~~~i~~nF~~l~~~l~ 86 (305)
T TIGR00006 9 LDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF--EGRVVLIHDNFANFFEHLD 86 (305)
T ss_pred HHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc--CCcEEEEeCCHHHHHHHHH
Confidence 344455566678889999999999999999886 34699999999 8999998887653 4679999999887531
Q ss_pred --C-CceeEEEEec
Q 014247 176 --D-EEVDVIISEW 186 (428)
Q Consensus 176 --~-~~~DlVvs~~ 186 (428)
. .++|.|+.++
T Consensus 87 ~~~~~~vDgIl~DL 100 (305)
T TIGR00006 87 ELLVTKIDGILVDL 100 (305)
T ss_pred hcCCCcccEEEEec
Confidence 1 5799999875
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0045 Score=55.71 Aligned_cols=120 Identities=16% Similarity=0.249 Sum_probs=64.0
Q ss_pred hccChhhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-----CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcE
Q 014247 90 MIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-----GAKRVYAVDAS-DIAVQANEVVKANNLTDKV 163 (428)
Q Consensus 90 ~~~d~~r~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-----g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v 163 (428)
+++.+...-.|.+.|-+. +.+.|+++|.-.|.-+.+.|.. +..+|+|||++ +.... +.++...+..+|
T Consensus 14 i~q~P~Dm~~~qeli~~~----kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~--~a~e~hp~~~rI 87 (206)
T PF04989_consen 14 IIQYPQDMVAYQELIWEL----KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNR--KAIESHPMSPRI 87 (206)
T ss_dssp ESS-HHHHHHHHHHHHHH------SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG----TTE
T ss_pred hhcCHHHHHHHHHHHHHh----CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhch--HHHhhccccCce
Confidence 444455555677777664 5689999999999877766642 34699999996 43322 223334556789
Q ss_pred EEEEcccccccC---------CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCC
Q 014247 164 IVLHGRVEDVEI---------DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYA 219 (428)
Q Consensus 164 ~~~~~d~~~l~~---------~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 219 (428)
+++++|..+... .....+|+-.. ...++. .-..|+....++++|+.+|+.+-
T Consensus 88 ~~i~Gds~d~~~~~~v~~~~~~~~~vlVilDs---~H~~~h-vl~eL~~y~plv~~G~Y~IVeDt 148 (206)
T PF04989_consen 88 TFIQGDSIDPEIVDQVRELASPPHPVLVILDS---SHTHEH-VLAELEAYAPLVSPGSYLIVEDT 148 (206)
T ss_dssp EEEES-SSSTHHHHTSGSS----SSEEEEESS-------SS-HHHHHHHHHHT--TT-EEEETSH
T ss_pred EEEECCCCCHHHHHHHHHhhccCCceEEEECC---CccHHH-HHHHHHHhCccCCCCCEEEEEec
Confidence 999999876421 13344666433 323333 44556668899999999987654
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0016 Score=65.44 Aligned_cols=114 Identities=14% Similarity=0.181 Sum_probs=69.2
Q ss_pred HHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccc-cc-
Q 014247 98 ETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVED-VE- 174 (428)
Q Consensus 98 ~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~-l~- 174 (428)
..|...+...+....-..|+|..+|.|.++..|.... |+.+... ....-....+-+.|+-. +.+ |..+ ++
T Consensus 351 ~~Y~~l~~~~i~~~~iRNVMDMnAg~GGFAAAL~~~~---VWVMNVVP~~~~ntL~vIydRGLIG---~yh-DWCE~fsT 423 (506)
T PF03141_consen 351 SHYKKLLGLAIKWGRIRNVMDMNAGYGGFAAALIDDP---VWVMNVVPVSGPNTLPVIYDRGLIG---VYH-DWCEAFST 423 (506)
T ss_pred HHHHHhhcccccccceeeeeeecccccHHHHHhccCC---ceEEEecccCCCCcchhhhhcccch---hcc-chhhccCC
Confidence 3444333323333334589999999999999888764 3332222 10000112233344422 221 3222 22
Q ss_pred CCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccC
Q 014247 175 IDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 175 ~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
.+.+||+|.+..+...+...-++..++-++.|+|+|||.+++.+
T Consensus 424 YPRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD 467 (506)
T PF03141_consen 424 YPRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRD 467 (506)
T ss_pred CCcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEec
Confidence 35899999998765555556668999999999999999999754
|
; GO: 0008168 methyltransferase activity |
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0068 Score=53.10 Aligned_cols=96 Identities=22% Similarity=0.224 Sum_probs=61.9
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHc--CCCeEEEEeChHHHHHHHHHHHHCCCCCcEEEEEc-cccccc---------CCC
Q 014247 110 FIEGKVVVDVGCGTGILSIFCAQA--GAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHG-RVEDVE---------IDE 177 (428)
Q Consensus 110 ~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~giD~s~~~~~a~~~~~~~~~~~~v~~~~~-d~~~l~---------~~~ 177 (428)
..++.+|||+||..|.++..+.+. ....|.|||+-... .. ..+.++++ |+++-. ...
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~----------p~-~Ga~~i~~~dvtdp~~~~ki~e~lp~r 135 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE----------PP-EGATIIQGNDVTDPETYRKIFEALPNR 135 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc----------CC-CCcccccccccCCHHHHHHHHHhCCCC
Confidence 367999999999999999988886 34589999986321 11 12566665 665421 237
Q ss_pred ceeEEEEecch-----hhhcchhhH---HHHHHHHhcccccCeEEEc
Q 014247 178 EVDVIISEWMG-----YMLLYESML---GSVITARDRWLKRGGLILP 216 (428)
Q Consensus 178 ~~DlVvs~~~~-----~~l~~~~~~---~~~l~~~~~~LkpgG~lv~ 216 (428)
++|+|+|.... ....|.... .+++.-....++|+|.++.
T Consensus 136 ~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvc 182 (232)
T KOG4589|consen 136 PVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVC 182 (232)
T ss_pred cccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEE
Confidence 89999997521 122222222 2234444567889999884
|
|
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.006 Score=56.13 Aligned_cols=84 Identities=20% Similarity=0.290 Sum_probs=49.8
Q ss_pred HHHhccCCCCC--CEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHH---HHHHHHHCCCC-----CcEEEEEcccc
Q 014247 103 AIMQNQSFIEG--KVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQ---ANEVVKANNLT-----DKVIVLHGRVE 171 (428)
Q Consensus 103 ~i~~~~~~~~~--~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~---a~~~~~~~~~~-----~~v~~~~~d~~ 171 (428)
.+.+.....++ .+|||.-+|-|.-++.+|..|+ +|+++|.| -+... +.++....... .+++++++|..
T Consensus 64 ~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~ 142 (234)
T PF04445_consen 64 PLAKAVGLKPGMRPSVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDAL 142 (234)
T ss_dssp HHHHHTT-BTTB---EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CC
T ss_pred HHHHHhCCCCCCCCEEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHH
Confidence 44455554555 3999999999999999998888 79999999 43333 33344333222 47999999987
Q ss_pred cc-cC-CCceeEEEEecc
Q 014247 172 DV-EI-DEEVDVIISEWM 187 (428)
Q Consensus 172 ~l-~~-~~~~DlVvs~~~ 187 (428)
++ .. ..+||+|+..+|
T Consensus 143 ~~L~~~~~s~DVVY~DPM 160 (234)
T PF04445_consen 143 EYLRQPDNSFDVVYFDPM 160 (234)
T ss_dssp CHCCCHSS--SEEEE--S
T ss_pred HHHhhcCCCCCEEEECCC
Confidence 74 22 389999999885
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0031 Score=60.36 Aligned_cols=113 Identities=17% Similarity=0.118 Sum_probs=68.2
Q ss_pred HHHhccCCCCCCEEEEEcCCCcHHHHHHHHc--CCCeEEEEeChHHHHHHHHHHHHCCCCCcEEEEEccccc----ccCC
Q 014247 103 AIMQNQSFIEGKVVVDVGCGTGILSIFCAQA--GAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVED----VEID 176 (428)
Q Consensus 103 ~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~giD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~----l~~~ 176 (428)
.+......+..++|||+|.|.|.-...+-.. -.+.++.++.|+.+...-.-+.+|-...+......|+.. ++..
T Consensus 104 ~L~~~~~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~a 183 (484)
T COG5459 104 ELQKRVPDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAA 183 (484)
T ss_pred HHHHhCCCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCcc
Confidence 3344445667789999999998765544333 245788889886666555555555333333333334332 2333
Q ss_pred CceeEEEEecchhhhcch---hhHHHHHHHHhcccccCeEEEccC
Q 014247 177 EEVDVIISEWMGYMLLYE---SMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 177 ~~~DlVvs~~~~~~l~~~---~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
..|++++. .+-+.+. ..+...++.+..++.|||.+++..
T Consensus 184 d~ytl~i~---~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivE 225 (484)
T COG5459 184 DLYTLAIV---LDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVE 225 (484)
T ss_pred ceeehhhh---hhhhccccCcchHHHHHHHHHHhccCCCeEEEEe
Confidence 66777765 2233222 224457888889999999888643
|
|
| >KOG1227 consensus Putative methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.00068 Score=63.45 Aligned_cols=76 Identities=25% Similarity=0.351 Sum_probs=67.3
Q ss_pred CCCCEEEEEcCCCcHHHH-HHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEEec
Q 014247 111 IEGKVVVDVGCGTGILSI-FCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEW 186 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~-~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~~ 186 (428)
-.+..|.|+-+|.|.+++ .+..+|++.|+++|.+ ..++..++.++.|+..++..++.+|-+...+....|-|..-+
T Consensus 193 c~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~~~~AdrVnLGL 270 (351)
T KOG1227|consen 193 CDGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKPRLRADRVNLGL 270 (351)
T ss_pred cccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCccccchheeecc
Confidence 345899999999999999 8888999999999999 889999999999999888899999988887778889888543
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.023 Score=52.58 Aligned_cols=72 Identities=15% Similarity=0.144 Sum_probs=51.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEE
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAG-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIIS 184 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs 184 (428)
.+..+|+|||||.=.+++...... ...++|+|++ .+++.....+...+.. .++...|...-+.....|+.+.
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~--~~~~v~Dl~~~~~~~~~DlaLl 177 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVP--HDARVRDLLSDPPKEPADLALL 177 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-C--EEEEEE-TTTSHTTSEESEEEE
T ss_pred CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCC--cceeEeeeeccCCCCCcchhhH
Confidence 347899999999998888766542 2389999999 9999988887777764 5566667766666688999986
|
|
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.019 Score=53.34 Aligned_cols=102 Identities=20% Similarity=0.190 Sum_probs=67.1
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeChHHHHHHHHHHHH-----CCCCCcEEEEEcccccccC----CCc-eeE
Q 014247 112 EGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQANEVVKA-----NNLTDKVIVLHGRVEDVEI----DEE-VDV 181 (428)
Q Consensus 112 ~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s~~~~~a~~~~~~-----~~~~~~v~~~~~d~~~l~~----~~~-~Dl 181 (428)
....||++|+|+|..++.+|.....+|.-.|..........+... +.+...+.+...+..+... ... +|+
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dl 165 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDL 165 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccE
Confidence 456899999999999988888655589999988444443333222 2333345554444333211 134 899
Q ss_pred EEEecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 182 IISEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 182 Vvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
|++.- ++..+...+.++..+..+|..+|.+++
T Consensus 166 ilasD---vvy~~~~~e~Lv~tla~ll~~~~~i~l 197 (248)
T KOG2793|consen 166 ILASD---VVYEEESFEGLVKTLAFLLAKDGTIFL 197 (248)
T ss_pred EEEee---eeecCCcchhHHHHHHHHHhcCCeEEE
Confidence 99854 555666678888888888988885543
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.035 Score=54.04 Aligned_cols=93 Identities=27% Similarity=0.332 Sum_probs=60.4
Q ss_pred cCCCCCCEEEEEcCC-CcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcc-ccccc-CCCceeEE
Q 014247 108 QSFIEGKVVVDVGCG-TGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGR-VEDVE-IDEEVDVI 182 (428)
Q Consensus 108 ~~~~~~~~VLDiGcG-tG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d-~~~l~-~~~~~DlV 182 (428)
....+|++|+-+|+| .|.++..+|++ |+ +|+++|.+ +-.+.|++.-. -.++... ..... ..+.||+|
T Consensus 162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga-~Via~~~~~~K~e~a~~lGA-------d~~i~~~~~~~~~~~~~~~d~i 233 (339)
T COG1064 162 ANVKPGKWVAVVGAGGLGHMAVQYAKAMGA-EVIAITRSEEKLELAKKLGA-------DHVINSSDSDALEAVKEIADAI 233 (339)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcCC-eEEEEeCChHHHHHHHHhCC-------cEEEEcCCchhhHHhHhhCcEE
Confidence 345789999999998 23567777774 75 99999999 87877776521 2333322 11111 11459999
Q ss_pred EEecchhhhcchhhHHHHHHHHhcccccCeEEEccC
Q 014247 183 ISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 183 vs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
+... . ...+....+.|++||++++-.
T Consensus 234 i~tv-----~-----~~~~~~~l~~l~~~G~~v~vG 259 (339)
T COG1064 234 IDTV-----G-----PATLEPSLKALRRGGTLVLVG 259 (339)
T ss_pred EECC-----C-----hhhHHHHHHHHhcCCEEEEEC
Confidence 9732 1 233455567899999988543
|
|
| >KOG2920 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.0047 Score=57.91 Aligned_cols=105 Identities=22% Similarity=0.278 Sum_probs=61.1
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHH-HHHH------HH--HCCCCCcEEEEEcccccccC--CC
Q 014247 110 FIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQ-ANEV------VK--ANNLTDKVIVLHGRVEDVEI--DE 177 (428)
Q Consensus 110 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~-a~~~------~~--~~~~~~~v~~~~~d~~~l~~--~~ 177 (428)
...+++|||+|||.|.....+...|+..+...|.| ..++. ..-+ +. .+....-..+.+.+..++.+ .+
T Consensus 114 ~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~ 193 (282)
T KOG2920|consen 114 SFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTE 193 (282)
T ss_pred EecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhcc
Confidence 36789999999999999999999887789999998 65521 1000 00 11111112223331112111 13
Q ss_pred --ceeEEEEecchhhhcchhhHHHH-HHHHhcccccCeEEEcc
Q 014247 178 --EVDVIISEWMGYMLLYESMLGSV-ITARDRWLKRGGLILPS 217 (428)
Q Consensus 178 --~~DlVvs~~~~~~l~~~~~~~~~-l~~~~~~LkpgG~lv~~ 217 (428)
.||+|.+.-. +........+ ......+++++|+++..
T Consensus 194 ~~~ydlIlsSet---iy~~~~~~~~~~~~r~~l~~~D~~~~~a 233 (282)
T KOG2920|consen 194 RTHYDLILSSET---IYSIDSLAVLYLLHRPCLLKTDGVFYVA 233 (282)
T ss_pred ccchhhhhhhhh---hhCcchhhhhHhhhhhhcCCccchhhhh
Confidence 7888887542 2233333333 55566778888887643
|
|
| >KOG2671 consensus Putative RNA methylase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.01 Score=56.88 Aligned_cols=78 Identities=22% Similarity=0.201 Sum_probs=61.1
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHH-------HHHHHHHCCCC-CcEEEEEcccccccCC--C
Q 014247 109 SFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQ-------ANEVVKANNLT-DKVIVLHGRVEDVEID--E 177 (428)
Q Consensus 109 ~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~-------a~~~~~~~~~~-~~v~~~~~d~~~l~~~--~ 177 (428)
...+|+.|+|-=-|||.+...+|..|+ .|+|.|++ .++.. .+.+++..|.. .-+.++.+|..+-+.. .
T Consensus 205 mv~pGdivyDPFVGTGslLvsaa~FGa-~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn~ 283 (421)
T KOG2671|consen 205 MVKPGDIVYDPFVGTGSLLVSAAHFGA-YVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSNL 283 (421)
T ss_pred ccCCCCEEecCccccCceeeehhhhcc-eeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhcc
Confidence 357899999999999999999999988 89999999 77662 24466666643 3367788888775543 7
Q ss_pred ceeEEEEecc
Q 014247 178 EVDVIISEWM 187 (428)
Q Consensus 178 ~~DlVvs~~~ 187 (428)
.||.|+|.+.
T Consensus 284 ~fDaIvcDPP 293 (421)
T KOG2671|consen 284 KFDAIVCDPP 293 (421)
T ss_pred eeeEEEeCCC
Confidence 8999999873
|
|
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.013 Score=52.99 Aligned_cols=97 Identities=26% Similarity=0.336 Sum_probs=66.0
Q ss_pred CCCCC-CEEEEEcCCCcHHHHHHHHcC--------C--CeEEEEeChHHHHHHHHHHHHCCCCCcEEEEEcccccccC--
Q 014247 109 SFIEG-KVVVDVGCGTGILSIFCAQAG--------A--KRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDVEI-- 175 (428)
Q Consensus 109 ~~~~~-~~VLDiGcGtG~ls~~la~~g--------~--~~V~giD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~-- 175 (428)
..+.| .+|+|+.+..|.++..+++.- . +++++||+.+|+- +. .|.-+++|++....
T Consensus 37 ~i~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaP----------I~-GV~qlq~DIT~~stae 105 (294)
T KOG1099|consen 37 QIFEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAP----------IE-GVIQLQGDITSASTAE 105 (294)
T ss_pred hHHhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCc----------cC-ceEEeecccCCHhHHH
Confidence 33444 589999999999999998751 1 1499999987752 22 37788899887532
Q ss_pred ------C-CceeEEEEecchh--hhcc------hhhHHHHHHHHhcccccCeEEEc
Q 014247 176 ------D-EEVDVIISEWMGY--MLLY------ESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 176 ------~-~~~DlVvs~~~~~--~l~~------~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
. ++.|+|+|..... .++. ...+-.+|.-...+|||||.++-
T Consensus 106 ~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVa 161 (294)
T KOG1099|consen 106 AIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVA 161 (294)
T ss_pred HHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeeh
Confidence 2 6899999965211 1111 11244556666789999999983
|
|
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.07 Score=48.01 Aligned_cols=106 Identities=18% Similarity=0.243 Sum_probs=64.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc---CCCeEEEEeCh-HHHHHHHHHHHHC-----------------------------
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQA---GAKRVYAVDAS-DIAVQANEVVKAN----------------------------- 157 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~---g~~~V~giD~s-~~~~~a~~~~~~~----------------------------- 157 (428)
..+-++.|-.||.|.+.-.+.-. ..+.|+|-|++ .+++.|++++.-.
T Consensus 50 ~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~ 129 (246)
T PF11599_consen 50 KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALE 129 (246)
T ss_dssp -S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 44569999999999876554432 34589999999 9999998886321
Q ss_pred ------------CCCCcEEEEEccccc------ccCCCceeEEEEec-chhhhcchh-----hHHHHHHHHhcccccCeE
Q 014247 158 ------------NLTDKVIVLHGRVED------VEIDEEVDVIISEW-MGYMLLYES-----MLGSVITARDRWLKRGGL 213 (428)
Q Consensus 158 ------------~~~~~v~~~~~d~~~------l~~~~~~DlVvs~~-~~~~l~~~~-----~~~~~l~~~~~~LkpgG~ 213 (428)
|-..-..+.+.|+.+ .+.....|+|+... .+.+..|+. -...+|..+..+|-.+++
T Consensus 130 sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sV 209 (246)
T PF11599_consen 130 SADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERSV 209 (246)
T ss_dssp HHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-E
T ss_pred HHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCcE
Confidence 122236788888876 23335579999976 345555554 378899999999955556
Q ss_pred EEc
Q 014247 214 ILP 216 (428)
Q Consensus 214 lv~ 216 (428)
+++
T Consensus 210 V~v 212 (246)
T PF11599_consen 210 VAV 212 (246)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.049 Score=56.23 Aligned_cols=96 Identities=24% Similarity=0.306 Sum_probs=60.1
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccc-----------cc-
Q 014247 110 FIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVED-----------VE- 174 (428)
Q Consensus 110 ~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~-----------l~- 174 (428)
..++.+||-+|||. |..+..+|+. |+ +|+++|.+ +-++.+++. |. +++..+..+ +.
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aesl----GA----~~v~i~~~e~~~~~~gya~~~s~ 232 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVESM----GA----EFLELDFEEEGGSGDGYAKVMSE 232 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc----CC----eEEEeccccccccccchhhhcch
Confidence 35789999999996 6777777776 88 79999999 666665542 22 211111100 00
Q ss_pred ----------CC--CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 175 ----------ID--EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 175 ----------~~--~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
.+ ..+|+|+... .......+..+.++..+.+||||+++.-
T Consensus 233 ~~~~~~~~~~~~~~~gaDVVIeta---g~pg~~aP~lit~~~v~~mkpGgvIVdv 284 (509)
T PRK09424 233 EFIKAEMALFAEQAKEVDIIITTA---LIPGKPAPKLITAEMVASMKPGSVIVDL 284 (509)
T ss_pred hHHHHHHHHHHhccCCCCEEEECC---CCCcccCcchHHHHHHHhcCCCCEEEEE
Confidence 01 4699999743 2222222333357888899999988743
|
|
| >TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.15 Score=48.13 Aligned_cols=166 Identities=13% Similarity=0.099 Sum_probs=100.7
Q ss_pred hhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeChHHHHHHHHHHHHCCC--CCcEEEEEccccc
Q 014247 95 VRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQANEVVKANNL--TDKVIVLHGRVED 172 (428)
Q Consensus 95 ~r~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s~~~~~a~~~~~~~~~--~~~v~~~~~d~~~ 172 (428)
.|+..+-+.+.+.+... ...|+.+|||-=.-...+......+++=+|..++++.-++.+.+.+. ..+.+++..|+.+
T Consensus 65 ~Rtr~~D~~i~~~~~~g-~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~ 143 (260)
T TIGR00027 65 VRTRFFDDFLLAAVAAG-IRQVVILGAGLDTRAYRLPWPDGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQ 143 (260)
T ss_pred HHHHHHHHHHHHHHhcC-CcEEEEeCCccccHHHhcCCCCCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchh
Confidence 56666667776665432 34699999998666665543211256566665677666667765442 4568899999862
Q ss_pred -c----c---C-CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhh------h
Q 014247 173 -V----E---I-DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESI------D 237 (428)
Q Consensus 173 -l----~---~-~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~------~ 237 (428)
+ . + +...-+++++.+..++ .+.....+++.+.+...||+.+++..... +............. .
T Consensus 144 ~w~~~L~~~gfd~~~ptl~i~EGvl~YL-~~~~v~~ll~~i~~~~~~gs~l~~d~~~~-~~~~~~~~~~~~~~~~~~~~~ 221 (260)
T TIGR00027 144 DWPAALAAAGFDPTAPTAWLWEGLLMYL-TEEAVDALLAFIAELSAPGSRLAFDYVRP-LDGEWRAGMRAPVYHAARGVD 221 (260)
T ss_pred hHHHHHHhCCCCCCCCeeeeecchhhcC-CHHHHHHHHHHHHHhCCCCcEEEEEeccc-cchhHHHHHHHHHHHhhhccc
Confidence 1 0 1 1345588888765444 44558889999988888999988764332 10000000000000 0
Q ss_pred hhhccCCCCcchhHHHHHhcCCCCce
Q 014247 238 FWRNVYGIDMSAMMPLAKQCAFEEPS 263 (428)
Q Consensus 238 ~~~~~~~~~~~~l~~~l~~~Gf~~~~ 263 (428)
.-.-.++++..++..++.+.||....
T Consensus 222 ~~~~~~~~~~~~~~~~l~~~Gw~~~~ 247 (260)
T TIGR00027 222 GSGLVFGIDRADVAEWLAERGWRASE 247 (260)
T ss_pred ccccccCCChhhHHHHHHHCCCeeec
Confidence 00114677888999999999998643
|
This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. |
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.054 Score=52.68 Aligned_cols=97 Identities=28% Similarity=0.281 Sum_probs=76.7
Q ss_pred CCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC--CceeEEEEecch
Q 014247 113 GKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID--EEVDVIISEWMG 188 (428)
Q Consensus 113 ~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~--~~~DlVvs~~~~ 188 (428)
..+|||.=+|+|.=+...|.. +..+|+.-|+| ..++.++++++.|...+ ..+++.|+..+-.. ..||+|=.+++|
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~-~~v~n~DAN~lm~~~~~~fd~IDiDPFG 131 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGED-AEVINKDANALLHELHRAFDVIDIDPFG 131 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCccc-ceeecchHHHHHHhcCCCccEEecCCCC
Confidence 789999999999999888876 55589999999 99999999999984444 67777887765433 789999877644
Q ss_pred hhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 189 YMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 189 ~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
. +..+++++.+.++.||.+.++
T Consensus 132 S-------PaPFlDaA~~s~~~~G~l~vT 153 (380)
T COG1867 132 S-------PAPFLDAALRSVRRGGLLCVT 153 (380)
T ss_pred C-------CchHHHHHHHHhhcCCEEEEE
Confidence 3 555677777778889988765
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.036 Score=49.36 Aligned_cols=103 Identities=14% Similarity=0.224 Sum_probs=60.7
Q ss_pred CEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCC------CCCcEEEEEcccccccCC----CceeE
Q 014247 114 KVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANN------LTDKVIVLHGRVEDVEID----EEVDV 181 (428)
Q Consensus 114 ~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~------~~~~v~~~~~d~~~l~~~----~~~Dl 181 (428)
-.+.|||||-|.+.+.++.. .-.-+.|+|+- ...+..+++++... .-.++.+........... ++.+-
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLsk 141 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLSK 141 (249)
T ss_pred ceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccccc
Confidence 46899999999999999987 34478899999 88888887776543 223356665554432211 11111
Q ss_pred EEEecchhhhc-----chhhHHHHHHHHhcccccCeEEEc
Q 014247 182 IISEWMGYMLL-----YESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 182 Vvs~~~~~~l~-----~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
.+.....-.+- +.-.-..++.+..-+|++||.++.
T Consensus 142 mff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~yt 181 (249)
T KOG3115|consen 142 MFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYT 181 (249)
T ss_pred ceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEE
Confidence 11100000000 000124456677778999998874
|
|
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.037 Score=50.52 Aligned_cols=111 Identities=23% Similarity=0.249 Sum_probs=66.8
Q ss_pred HHHHHHHh---ccCCCCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccc
Q 014247 99 TYRAAIMQ---NQSFIEGKVVVDVGCGTGILSIFCAQA-G-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVED 172 (428)
Q Consensus 99 ~~~~~i~~---~~~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 172 (428)
.+...|.- .+...++.+||-+|+++|.....++.. | -.-||++|.| ..-......+++ -. +|--+.-|++.
T Consensus 140 KLAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk--Rt-NiiPIiEDArh 216 (317)
T KOG1596|consen 140 KLAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK--RT-NIIPIIEDARH 216 (317)
T ss_pred HHHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhc--cC-CceeeeccCCC
Confidence 34444432 456689999999999999987777765 3 3379999998 432222222211 12 34445456654
Q ss_pred ccC----CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 173 VEI----DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 173 l~~----~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
-.. -.-+|+|+++. .......-+.-....+||+||-++++
T Consensus 217 P~KYRmlVgmVDvIFaDv-----aqpdq~RivaLNA~~FLk~gGhfvis 260 (317)
T KOG1596|consen 217 PAKYRMLVGMVDVIFADV-----AQPDQARIVALNAQYFLKNGGHFVIS 260 (317)
T ss_pred chheeeeeeeEEEEeccC-----CCchhhhhhhhhhhhhhccCCeEEEE
Confidence 211 14678888754 11222333344567899999988865
|
|
| >KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.0061 Score=61.08 Aligned_cols=101 Identities=21% Similarity=0.228 Sum_probs=82.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc--CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC-----CCceeEE
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQA--GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI-----DEEVDVI 182 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~--g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~-----~~~~DlV 182 (428)
.++.+|||.=|++|+-++..|+. |..+|++-|.+ ..+...+++++.|+.++.++..+.|+..+-. ...||+|
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvI 187 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVI 187 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceE
Confidence 35678999999999999888886 77899999999 8888889999999998889999999776422 2789999
Q ss_pred EEecchhhhcchhhHHHHHHHHhcccccCeEEEccC
Q 014247 183 ISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 183 vs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
=.++.| ....+|+.+.+.++.||+|.++.
T Consensus 188 DLDPyG-------s~s~FLDsAvqav~~gGLL~vT~ 216 (525)
T KOG1253|consen 188 DLDPYG-------SPSPFLDSAVQAVRDGGLLCVTC 216 (525)
T ss_pred ecCCCC-------CccHHHHHHHHHhhcCCEEEEEe
Confidence 876633 25567777778889999998764
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.028 Score=55.60 Aligned_cols=94 Identities=30% Similarity=0.330 Sum_probs=61.1
Q ss_pred CCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEc-cc----ccccCCCceeEE
Q 014247 111 IEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHG-RV----EDVEIDEEVDVI 182 (428)
Q Consensus 111 ~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~-d~----~~l~~~~~~DlV 182 (428)
.++.+|+-+|||. |+++..+++. |+.+|+++|.+ .-++.|++.... +.+..... +. ..+.....+|++
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~----~~~~~~~~~~~~~~~~~~t~g~g~D~v 242 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGA----DVVVNPSEDDAGAEILELTGGRGADVV 242 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCC----eEeecCccccHHHHHHHHhCCCCCCEE
Confidence 4455999999997 8887777776 88999999999 778777764321 11111111 11 111212469999
Q ss_pred EEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 183 ISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 183 vs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
+-.. + ....+..+.++++|||.+++-
T Consensus 243 ie~~-G--------~~~~~~~ai~~~r~gG~v~~v 268 (350)
T COG1063 243 IEAV-G--------SPPALDQALEALRPGGTVVVV 268 (350)
T ss_pred EECC-C--------CHHHHHHHHHHhcCCCEEEEE
Confidence 8632 2 334667777889999988753
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.03 Score=56.05 Aligned_cols=106 Identities=21% Similarity=0.244 Sum_probs=64.6
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcc-c----ccccCCCce
Q 014247 108 QSFIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGR-V----EDVEIDEEV 179 (428)
Q Consensus 108 ~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d-~----~~l~~~~~~ 179 (428)
....++.+||.+|||. |.++..+|++ |..+|++++.+ +..+.+++.. +. ..+.....+ . .++.....+
T Consensus 180 ~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~---~~-~vi~~~~~~~~~~~l~~~~~~~~~ 255 (386)
T cd08283 180 AEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL---GA-ETINFEEVDDVVEALRELTGGRGP 255 (386)
T ss_pred ccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC---Cc-EEEcCCcchHHHHHHHHHcCCCCC
Confidence 4456788999999987 7788888876 66579999998 7777666541 11 112111111 1 112222469
Q ss_pred eEEEEecch------------hhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 180 DVIISEWMG------------YMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 180 DlVvs~~~~------------~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
|+|+...-+ +.+....+....+..+.+.|+++|.++..
T Consensus 256 D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~ 305 (386)
T cd08283 256 DVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSII 305 (386)
T ss_pred CEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEE
Confidence 999874210 01111223355677888899999988754
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.096 Score=50.12 Aligned_cols=96 Identities=21% Similarity=0.173 Sum_probs=64.0
Q ss_pred CCCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEc-c-cccc-------cCC
Q 014247 109 SFIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHG-R-VEDV-------EID 176 (428)
Q Consensus 109 ~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~-d-~~~l-------~~~ 176 (428)
....|.+||-+|+|. |.++...|++ |+++|+.+|++ +-++.|++ + |... +..... + ..++ .-.
T Consensus 166 ~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~---Ga~~-~~~~~~~~~~~~~~~~v~~~~g~ 240 (354)
T KOG0024|consen 166 GVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-F---GATV-TDPSSHKSSPQELAELVEKALGK 240 (354)
T ss_pred CcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-h---CCeE-EeeccccccHHHHHHHHHhhccc
Confidence 457899999999995 8888989987 99999999999 88888877 3 2221 111111 1 1111 011
Q ss_pred CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccC
Q 014247 177 EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 177 ~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
..+|+.+... . .+..++.....+++||.+++..
T Consensus 241 ~~~d~~~dCs---G------~~~~~~aai~a~r~gGt~vlvg 273 (354)
T KOG0024|consen 241 KQPDVTFDCS---G------AEVTIRAAIKATRSGGTVVLVG 273 (354)
T ss_pred cCCCeEEEcc---C------chHHHHHHHHHhccCCEEEEec
Confidence 4588888643 1 3344555567789999977543
|
|
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.14 Score=53.04 Aligned_cols=116 Identities=15% Similarity=0.067 Sum_probs=78.1
Q ss_pred HHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-C----CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccc
Q 014247 98 ETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-G----AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVE 171 (428)
Q Consensus 98 ~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g----~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~ 171 (428)
+...+.|.+.+...+..+|+|-.||+|.+...+++. + ...++|.|++ .....|+.++--++....+....+|..
T Consensus 172 ~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl 251 (489)
T COG0286 172 REVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTL 251 (489)
T ss_pred HHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccc
Confidence 345566666665556779999999999887766664 2 1468999999 888889888887777543555555543
Q ss_pred ccc------CCCceeEEEEecchhhhcch----------------------hhHHHHHHHHhcccccCeE
Q 014247 172 DVE------IDEEVDVIISEWMGYMLLYE----------------------SMLGSVITARDRWLKRGGL 213 (428)
Q Consensus 172 ~l~------~~~~~DlVvs~~~~~~l~~~----------------------~~~~~~l~~~~~~LkpgG~ 213 (428)
.-+ ..++||.|++++..+.-.+. .....+++.+...|+|||+
T Consensus 252 ~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~ 321 (489)
T COG0286 252 SNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGR 321 (489)
T ss_pred cCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCce
Confidence 322 12679999998743211111 1125667778888888763
|
|
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.045 Score=52.19 Aligned_cols=65 Identities=17% Similarity=0.262 Sum_probs=50.2
Q ss_pred EEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC---CCceeEEEEec
Q 014247 115 VVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI---DEEVDVIISEW 186 (428)
Q Consensus 115 ~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~---~~~~DlVvs~~ 186 (428)
+|+|+-||.|.++.-+.++|++.|.++|++ ..++..+.+.. + .++.+|+.++.. ...+|+|+...
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~-----~--~~~~~Di~~~~~~~~~~~~D~l~~gp 70 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFP-----N--KLIEGDITKIDEKDFIPDIDLLTGGF 70 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCC-----C--CCccCccccCchhhcCCCCCEEEeCC
Confidence 689999999999999999999889999999 66655555432 1 256778877653 35799999865
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.082 Score=49.85 Aligned_cols=109 Identities=16% Similarity=0.083 Sum_probs=75.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHH--CCC-CCcEEEEEcccccc---cCCCceeEE
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKA--NNL-TDKVIVLHGRVEDV---EIDEEVDVI 182 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~--~~~-~~~v~~~~~d~~~l---~~~~~~DlV 182 (428)
...++||-||.|.|......+++ ....+.-+|+. ..++..++.... .+. ..+|.+.-||-..+ -..++||+|
T Consensus 120 ~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVi 199 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVI 199 (337)
T ss_pred CCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEE
Confidence 45689999999999998888887 45588999999 777776665443 223 34688888885543 124899999
Q ss_pred EEecchhhhcchh-hHHHHHHHHhcccccCeEEEccCC
Q 014247 183 ISEWMGYMLLYES-MLGSVITARDRWLKRGGLILPSYA 219 (428)
Q Consensus 183 vs~~~~~~l~~~~-~~~~~l~~~~~~LkpgG~lv~~~~ 219 (428)
+.+.-.-...... -...+..-+.+.||+||+++....
T Consensus 200 i~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~e 237 (337)
T KOG1562|consen 200 ITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGE 237 (337)
T ss_pred EEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecc
Confidence 9865221222221 245667778899999999886543
|
|
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.31 Score=47.56 Aligned_cols=113 Identities=18% Similarity=0.101 Sum_probs=70.0
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHHcCC---C--eEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc-------
Q 014247 108 QSFIEGKVVVDVGCGTGILSIFCAQAGA---K--RVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE------- 174 (428)
Q Consensus 108 ~~~~~~~~VLDiGcGtG~ls~~la~~g~---~--~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~------- 174 (428)
+...++.+|||+.+..|.=+..+.++.. . .|++=|.+ .-+...+..+..- -...+.+...|+...+
T Consensus 151 L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l-~~~~~~v~~~~~~~~p~~~~~~~ 229 (375)
T KOG2198|consen 151 LGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRL-PSPNLLVTNHDASLFPNIYLKDG 229 (375)
T ss_pred cccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhcc-CCcceeeecccceeccccccccC
Confidence 4567899999999999988877766522 2 78999988 5444444444222 2223444444443321
Q ss_pred ---CCCceeEEEEecc--hhh-hcch-----------------hhHHHHHHHHhcccccCeEEEccCCee
Q 014247 175 ---IDEEVDVIISEWM--GYM-LLYE-----------------SMLGSVITARDRWLKRGGLILPSYATL 221 (428)
Q Consensus 175 ---~~~~~DlVvs~~~--~~~-l~~~-----------------~~~~~~l~~~~~~LkpgG~lv~~~~~~ 221 (428)
....||-|++... +.. +... ..--.+|.+-.++||+||.+|-+++++
T Consensus 230 ~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSL 299 (375)
T KOG2198|consen 230 NDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSL 299 (375)
T ss_pred chhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCC
Confidence 1167999998642 111 1000 012345777789999999999888764
|
|
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.062 Score=42.87 Aligned_cols=32 Identities=31% Similarity=0.577 Sum_probs=27.3
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh
Q 014247 112 EGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS 144 (428)
Q Consensus 112 ~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s 144 (428)
+.....|||||+|.+...|.+.|. .=+|+|.-
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy-~G~GiD~R 89 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGY-PGWGIDAR 89 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCC-Cccccccc
Confidence 445799999999999999999988 67788864
|
; GO: 0008168 methyltransferase activity |
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.16 Score=49.81 Aligned_cols=95 Identities=21% Similarity=0.212 Sum_probs=55.7
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC-CCceeEEEEe
Q 014247 110 FIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI-DEEVDVIISE 185 (428)
Q Consensus 110 ~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~-~~~~DlVvs~ 185 (428)
..++.+||-.|||. |.++..+|++ |+++|+++|.+ +-.+.+++ .|...-+..-..++.++.. .+.+|+|+..
T Consensus 167 ~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~~~~~g~~D~vid~ 242 (343)
T PRK09880 167 DLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE----MGADKLVNPQNDDLDHYKAEKGYFDVSFEV 242 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH----cCCcEEecCCcccHHHHhccCCCCCEEEEC
Confidence 35788999999863 4556666665 77789999998 66665544 2322111111112222111 1458999863
Q ss_pred cchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 186 WMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 186 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
. + . ...+....++|++||+++..
T Consensus 243 ~-G----~----~~~~~~~~~~l~~~G~iv~~ 265 (343)
T PRK09880 243 S-G----H----PSSINTCLEVTRAKGVMVQV 265 (343)
T ss_pred C-C----C----HHHHHHHHHHhhcCCEEEEE
Confidence 2 1 1 22345566789999998854
|
|
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.56 Score=46.66 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=18.5
Q ss_pred hHHHHHHHHhcccccCeEEEcc
Q 014247 196 MLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 196 ~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
|+..+|+...+-|.|||++++.
T Consensus 215 D~~~FL~~Ra~ELvpGG~mvl~ 236 (386)
T PLN02668 215 DLAGFLRARAQEMKRGGAMFLV 236 (386)
T ss_pred HHHHHHHHHHHHhccCcEEEEE
Confidence 4667788888999999999865
|
|
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.51 Score=41.31 Aligned_cols=130 Identities=18% Similarity=0.125 Sum_probs=74.8
Q ss_pred EEcCCCcHHHHHHHHc-C-CCeEEEEeCh---HHHHH---HHHHHHHCCCCCcEEEEEcccccccC-----CCceeEEEE
Q 014247 118 DVGCGTGILSIFCAQA-G-AKRVYAVDAS---DIAVQ---ANEVVKANNLTDKVIVLHGRVEDVEI-----DEEVDVIIS 184 (428)
Q Consensus 118 DiGcGtG~ls~~la~~-g-~~~V~giD~s---~~~~~---a~~~~~~~~~~~~v~~~~~d~~~l~~-----~~~~DlVvs 184 (428)
=||-|.=.++..+++. + ...++|.-.. ++.+. +..+++.-.-.+.......|++++.. ..+||.|+-
T Consensus 2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEE
Confidence 4666776777777776 4 5577766554 23222 22333322111112334456666532 278999998
Q ss_pred ecchhh----------hcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhhccCCCCcchhHHHH
Q 014247 185 EWMGYM----------LLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAMMPLA 254 (428)
Q Consensus 185 ~~~~~~----------l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 254 (428)
+..... -.+...+..+++.+..+|+++|.+.++...- .+++.-.+..+.
T Consensus 82 NFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~---------------------~py~~W~i~~lA 140 (166)
T PF10354_consen 82 NFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDG---------------------QPYDSWNIEELA 140 (166)
T ss_pred eCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC---------------------CCCccccHHHHH
Confidence 763222 1223457888999999999999998753321 012233455677
Q ss_pred HhcCCCCceEEeec
Q 014247 255 KQCAFEEPSVETIT 268 (428)
Q Consensus 255 ~~~Gf~~~~~~~~~ 268 (428)
.++||.......++
T Consensus 141 ~~~gl~l~~~~~F~ 154 (166)
T PF10354_consen 141 AEAGLVLVRKVPFD 154 (166)
T ss_pred HhcCCEEEEEecCC
Confidence 78888765554443
|
|
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.41 Score=45.57 Aligned_cols=85 Identities=18% Similarity=0.183 Sum_probs=67.9
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcC--CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC-
Q 014247 100 YRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAG--AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI- 175 (428)
Q Consensus 100 ~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g--~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~- 175 (428)
+.+.+...+...++...+|.--|.|..+..+.+.. .++++|+|.+ ..++.|++++...+ +++.++++.+.++..
T Consensus 11 Ll~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~~l~~~ 88 (314)
T COG0275 11 LLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFANLAEA 88 (314)
T ss_pred HHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcHHHHHHH
Confidence 34455566777888999999999999999998874 3579999999 89999999887654 689999998877532
Q ss_pred -----CCceeEEEEec
Q 014247 176 -----DEEVDVIISEW 186 (428)
Q Consensus 176 -----~~~~DlVvs~~ 186 (428)
.+++|-|+..+
T Consensus 89 l~~~~i~~vDGiL~DL 104 (314)
T COG0275 89 LKELGIGKVDGILLDL 104 (314)
T ss_pred HHhcCCCceeEEEEec
Confidence 16888888764
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.25 Score=47.29 Aligned_cols=58 Identities=14% Similarity=0.182 Sum_probs=46.9
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHH
Q 014247 97 TETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKA 156 (428)
Q Consensus 97 ~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~ 156 (428)
...+.+.+.+... .+|..|||-=||+|..+..+.+.|- +.+|+|++ +.++.|++++..
T Consensus 194 P~~L~erlI~~~S-~~GD~VLDPF~GSGTT~~AA~~lgR-~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 194 PEALLKRIILASS-NPGDIVLDPFAGSFTTGAVAKASGR-KFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred hHHHHHHHHHHhC-CCCCEEEECCCCCcHHHHHHHHcCC-CEEEEeCCHHHHHHHHHHHHh
Confidence 3455555555443 7899999999999999998888865 89999999 999999998754
|
|
| >PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.8 Score=42.80 Aligned_cols=122 Identities=24% Similarity=0.241 Sum_probs=68.6
Q ss_pred hhhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHH---c-C--CCeEEEEeCh-H---------------------
Q 014247 94 RVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQ---A-G--AKRVYAVDAS-D--------------------- 145 (428)
Q Consensus 94 ~~r~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~---~-g--~~~V~giD~s-~--------------------- 145 (428)
..|...+..++...+...-...|+++||-.|..+..++. . + .+++++.|.= .
T Consensus 56 ~~Rl~~L~~~~~~v~~~~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~ 135 (248)
T PF05711_consen 56 RERLDNLYQAVEQVLAEDVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYN 135 (248)
T ss_dssp HHHHHHHHHHHHHCCHTTS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCC
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcc
Confidence 355566777777765434445899999999987765533 1 2 3478888731 1
Q ss_pred -----HHHHHHHHHHHCCC-CCcEEEEEcccccccCC---CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 146 -----IAVQANEVVKANNL-TDKVIVLHGRVEDVEID---EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 146 -----~~~~a~~~~~~~~~-~~~v~~~~~d~~~l~~~---~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
..+..++++...++ .+++.++.|.+.+.-.. +++-++.... =.++ ....+|..++..|.|||++++
T Consensus 136 ~~~~~s~e~V~~n~~~~gl~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~----DlYe-sT~~aLe~lyprl~~GGiIi~ 210 (248)
T PF05711_consen 136 GYLAVSLEEVRENFARYGLLDDNVRFVKGWFPDTLPDAPIERIALLHLDC----DLYE-STKDALEFLYPRLSPGGIIIF 210 (248)
T ss_dssp HHCTHHHHHHHHCCCCTTTSSTTEEEEES-HHHHCCC-TT--EEEEEE-------SHH-HHHHHHHHHGGGEEEEEEEEE
T ss_pred cccccCHHHHHHHHHHcCCCcccEEEECCcchhhhccCCCccEEEEEEec----cchH-HHHHHHHHHHhhcCCCeEEEE
Confidence 12222233333333 45799999998763221 4444444321 1122 367788999999999999998
Q ss_pred cCCe
Q 014247 217 SYAT 220 (428)
Q Consensus 217 ~~~~ 220 (428)
.+..
T Consensus 211 DDY~ 214 (248)
T PF05711_consen 211 DDYG 214 (248)
T ss_dssp SSTT
T ss_pred eCCC
Confidence 7643
|
TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A. |
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=93.54 E-value=0.65 Score=45.60 Aligned_cols=107 Identities=18% Similarity=0.190 Sum_probs=54.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc----------CC-------CeEEEEeCh--HHHHHHHHHHHH----CCCCC-cEEEE
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQA----------GA-------KRVYAVDAS--DIAVQANEVVKA----NNLTD-KVIVL 166 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~----------g~-------~~V~giD~s--~~~~~a~~~~~~----~~~~~-~v~~~ 166 (428)
...-+|+|+||.+|..++.+... .. -+|+--|.- ..-...+..-.. ....+ -+.-+
T Consensus 15 ~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gv 94 (334)
T PF03492_consen 15 PKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGV 94 (334)
T ss_dssp TTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEE
T ss_pred CCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEec
Confidence 45569999999999988776542 01 167777764 322222111111 00111 12223
Q ss_pred Eccccc-ccCCCceeEEEEecchhhhc---------------------c---------------hhhHHHHHHHHhcccc
Q 014247 167 HGRVED-VEIDEEVDVIISEWMGYMLL---------------------Y---------------ESMLGSVITARDRWLK 209 (428)
Q Consensus 167 ~~d~~~-l~~~~~~DlVvs~~~~~~l~---------------------~---------------~~~~~~~l~~~~~~Lk 209 (428)
-+.+.+ +-++++.|+++|..-.|.+. . ..|+..+|+...+-|+
T Consensus 95 pgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv 174 (334)
T PF03492_consen 95 PGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEELV 174 (334)
T ss_dssp ES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred CchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhheec
Confidence 344433 22238899999854111110 0 1356778999999999
Q ss_pred cCeEEEcc
Q 014247 210 RGGLILPS 217 (428)
Q Consensus 210 pgG~lv~~ 217 (428)
|||++++.
T Consensus 175 ~GG~mvl~ 182 (334)
T PF03492_consen 175 PGGRMVLT 182 (334)
T ss_dssp EEEEEEEE
T ss_pred cCcEEEEE
Confidence 99999865
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=93.27 E-value=0.3 Score=48.00 Aligned_cols=110 Identities=23% Similarity=0.229 Sum_probs=71.3
Q ss_pred HHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHH-------HHCCC-CCcEEEEEcccccc
Q 014247 104 IMQNQSFIEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVV-------KANNL-TDKVIVLHGRVEDV 173 (428)
Q Consensus 104 i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~-------~~~~~-~~~v~~~~~d~~~l 173 (428)
+.+.+...++....|+|.|.|.+...+|.. ++++-+|+++. .....|..+. +..|. .+.++.+++++.+-
T Consensus 184 i~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~ 263 (419)
T KOG3924|consen 184 IVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDP 263 (419)
T ss_pred HHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCH
Confidence 344456788999999999999988777765 67778888876 3333332221 12232 34588888887653
Q ss_pred cC----CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 174 EI----DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 174 ~~----~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
.. ....++|+++. +..... +..=+.++..-+++|-+++-.
T Consensus 264 ~~v~eI~~eatvi~vNN---~~Fdp~-L~lr~~eil~~ck~gtrIiS~ 307 (419)
T KOG3924|consen 264 KRVTEIQTEATVIFVNN---VAFDPE-LKLRSKEILQKCKDGTRIISS 307 (419)
T ss_pred HHHHHHhhcceEEEEec---ccCCHH-HHHhhHHHHhhCCCcceEecc
Confidence 22 26789999877 333222 333344666778999988744
|
|
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=93.18 E-value=0.24 Score=47.72 Aligned_cols=83 Identities=22% Similarity=0.320 Sum_probs=57.6
Q ss_pred HHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC----
Q 014247 102 AAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI---- 175 (428)
Q Consensus 102 ~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~---- 175 (428)
+.+.+.+...++..++|.--|.|..+..+.+. +..+|+|+|.+ .++..|++++.. ..+++.++++++.++..
T Consensus 10 ~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~--~~~r~~~~~~~F~~l~~~l~~ 87 (310)
T PF01795_consen 10 KEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKK--FDDRFIFIHGNFSNLDEYLKE 87 (310)
T ss_dssp HHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCC--CCTTEEEEES-GGGHHHHHHH
T ss_pred HHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhh--ccceEEEEeccHHHHHHHHHH
Confidence 34445555678889999999999999999986 44799999999 888888776543 35789999999887631
Q ss_pred ---CCceeEEEEec
Q 014247 176 ---DEEVDVIISEW 186 (428)
Q Consensus 176 ---~~~~DlVvs~~ 186 (428)
..++|-|+..+
T Consensus 88 ~~~~~~~dgiL~DL 101 (310)
T PF01795_consen 88 LNGINKVDGILFDL 101 (310)
T ss_dssp TTTTS-EEEEEEE-
T ss_pred ccCCCccCEEEEcc
Confidence 25899999865
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=93.14 E-value=0.057 Score=46.34 Aligned_cols=96 Identities=19% Similarity=0.197 Sum_probs=57.2
Q ss_pred CCEEEEEcCCCcHHHHHHHHcCCCeEEEEeChHH--HHHHHHHHHHCCCCCcE-EEEEcccc-cc-cCCCceeEEEEec-
Q 014247 113 GKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDI--AVQANEVVKANNLTDKV-IVLHGRVE-DV-EIDEEVDVIISEW- 186 (428)
Q Consensus 113 ~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s~~--~~~a~~~~~~~~~~~~v-~~~~~d~~-~l-~~~~~~DlVvs~~- 186 (428)
++++|-+|...=..=..+.+.|+++|..||.+.. -+..+ +++ .+...|.. ++ ...++||.+.|-.
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~---------dr~ssi~p~df~~~~~~y~~~fD~~as~~s 72 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFR---------DRLSSILPVDFAKNWQKYAGSFDFAASFSS 72 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCcccc---------cccccccHHHHHHHHHHhhccchhhheech
Confidence 5788999999866666666779999999998732 11111 111 12222221 11 1237899988733
Q ss_pred chh--------hhcchhhHHHHHHHHhcccccCeEEEccC
Q 014247 187 MGY--------MLLYESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 187 ~~~--------~l~~~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
+.+ -+....++ ..+.++.++|||||.+++..
T Consensus 73 iEh~GLGRYGDPidp~Gdl-~~m~~i~~vLK~GG~L~l~v 111 (177)
T PF03269_consen 73 IEHFGLGRYGDPIDPIGDL-RAMAKIKCVLKPGGLLFLGV 111 (177)
T ss_pred hccccccccCCCCCccccH-HHHHHHHHhhccCCeEEEEe
Confidence 111 11222333 34667889999999999753
|
|
| >PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length | Back alignment and domain information |
|---|
Probab=93.11 E-value=1.4 Score=39.88 Aligned_cols=109 Identities=15% Similarity=0.185 Sum_probs=66.8
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCc----HHHHHHHH-cCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccc-c
Q 014247 100 YRAAIMQNQSFIEGKVVVDVGCGTG----ILSIFCAQ-AGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVE-D 172 (428)
Q Consensus 100 ~~~~i~~~~~~~~~~~VLDiGcGtG----~ls~~la~-~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~-~ 172 (428)
..+.|..+..-...+.++++.|+-| .+++.+|. +-..++++|-.. +-....++.+...++.+.++|+.++.. +
T Consensus 29 ~aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~ 108 (218)
T PF07279_consen 29 VAEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEE 108 (218)
T ss_pred HHHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHH
Confidence 3455555555556678999966543 23333333 223378888888 666677777777788877899998843 3
Q ss_pred ccC-CCceeEEEEecchhhhcchhhHH-HHHHHHhcccccCeEEEc
Q 014247 173 VEI-DEEVDVIISEWMGYMLLYESMLG-SVITARDRWLKRGGLILP 216 (428)
Q Consensus 173 l~~-~~~~DlVvs~~~~~~l~~~~~~~-~~l~~~~~~LkpgG~lv~ 216 (428)
+-. -..+|.++.+. - ..+.. .+|+.+. +.|.|.++.
T Consensus 109 ~~~~~~~iDF~vVDc---~---~~d~~~~vl~~~~--~~~~GaVVV 146 (218)
T PF07279_consen 109 VMPGLKGIDFVVVDC---K---REDFAARVLRAAK--LSPRGAVVV 146 (218)
T ss_pred HHhhccCCCEEEEeC---C---chhHHHHHHHHhc--cCCCceEEE
Confidence 322 26799998754 1 22333 6666543 555565554
|
The function of this family is unknown. |
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.76 E-value=0.48 Score=43.23 Aligned_cols=75 Identities=16% Similarity=0.280 Sum_probs=51.5
Q ss_pred CCCEEEEEcCCCcHH-HHH-HHHcCCCeEEEEeCh-HHHHHHHHHHHHC-CCCCcEEEEEcccccccC------CCceeE
Q 014247 112 EGKVVVDVGCGTGIL-SIF-CAQAGAKRVYAVDAS-DIAVQANEVVKAN-NLTDKVIVLHGRVEDVEI------DEEVDV 181 (428)
Q Consensus 112 ~~~~VLDiGcGtG~l-s~~-la~~g~~~V~giD~s-~~~~~a~~~~~~~-~~~~~v~~~~~d~~~l~~------~~~~Dl 181 (428)
+..++||||.|.--. .+. ....|. +.+|.|++ ..+..|+.++..| +++..|++....=.+--+ .+.||+
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eYgw-rfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~ 156 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEYGW-RFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDA 156 (292)
T ss_pred CceEEEeeccCcccccccccceeecc-eeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeee
Confidence 456899998886422 111 122356 79999999 8888899999888 777777776543222111 379999
Q ss_pred EEEecc
Q 014247 182 IISEWM 187 (428)
Q Consensus 182 Vvs~~~ 187 (428)
++|++.
T Consensus 157 tlCNPP 162 (292)
T COG3129 157 TLCNPP 162 (292)
T ss_pred EecCCC
Confidence 999984
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=92.68 E-value=0.47 Score=43.84 Aligned_cols=57 Identities=16% Similarity=0.216 Sum_probs=45.1
Q ss_pred HHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHH
Q 014247 98 ETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKA 156 (428)
Q Consensus 98 ~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~ 156 (428)
..+.+.+.+... .+|..|||-=||+|..+..+.+.|- +.+|+|++ ...+.|.+++..
T Consensus 150 ~~l~~~~i~~~s-~~g~~vlDpf~Gsgtt~~aa~~~~r-~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 150 VTSLQPLIESFT-HPNAIVLDPFAGSGSTCVAALQSGR-RYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred HHHHHHHHHHhC-CCCCEEEeCCCCCCHHHHHHHHcCC-CEEEEecCHHHHHHHHHHHHH
Confidence 344444444433 5889999999999999998888866 89999999 889998888765
|
|
| >COG1568 Predicted methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.59 E-value=0.43 Score=44.69 Aligned_cols=97 Identities=20% Similarity=0.128 Sum_probs=66.8
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC---CCceeEEE
Q 014247 109 SFIEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI---DEEVDVII 183 (428)
Q Consensus 109 ~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~---~~~~DlVv 183 (428)
+...|+.|+-+|- .-+.++.++-. -+++|..+|++ .++....+.+++.|+.+ ++.+.-|+++--+ .++||+++
T Consensus 149 GDL~gK~I~vvGD-DDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~-ie~~~~Dlr~plpe~~~~kFDvfi 226 (354)
T COG1568 149 GDLEGKEIFVVGD-DDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNN-IEAFVFDLRNPLPEDLKRKFDVFI 226 (354)
T ss_pred cCcCCCeEEEEcC-chhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccc-hhheeehhcccChHHHHhhCCeee
Confidence 4457889999993 33556555554 37799999999 89999888888888865 8888889887322 18999999
Q ss_pred EecchhhhcchhhHHHHHHHHhcccccC
Q 014247 184 SEWMGYMLLYESMLGSVITARDRWLKRG 211 (428)
Q Consensus 184 s~~~~~~l~~~~~~~~~l~~~~~~Lkpg 211 (428)
..+... ...+..++..=...||.-
T Consensus 227 TDPpeT----i~alk~FlgRGI~tLkg~ 250 (354)
T COG1568 227 TDPPET----IKALKLFLGRGIATLKGE 250 (354)
T ss_pred cCchhh----HHHHHHHHhccHHHhcCC
Confidence 865221 122444444444445543
|
|
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=92.52 E-value=0.36 Score=49.84 Aligned_cols=93 Identities=23% Similarity=0.294 Sum_probs=57.3
Q ss_pred CCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccc---------------
Q 014247 111 IEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVED--------------- 172 (428)
Q Consensus 111 ~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~--------------- 172 (428)
.++.+||-+|||. |..+..+++. |+ .|+++|.+ ..++.+++ .+. +++..|..+
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA-~V~v~d~~~~rle~a~~----lGa----~~v~v~~~e~g~~~~gYa~~~s~~ 232 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQS----MGA----EFLELDFKEEGGSGDGYAKVMSEE 232 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----cCC----eEEeccccccccccccceeecCHH
Confidence 4568999999996 5666666665 77 69999999 65554443 222 222222110
Q ss_pred --------ccC-CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEE
Q 014247 173 --------VEI-DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLIL 215 (428)
Q Consensus 173 --------l~~-~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv 215 (428)
+.. -..+|+|+... .......+.-+.+++.+.+|||++++
T Consensus 233 ~~~~~~~~~~e~~~~~DIVI~Ta---lipG~~aP~Lit~emv~~MKpGsvIV 281 (511)
T TIGR00561 233 FIAAEMELFAAQAKEVDIIITTA---LIPGKPAPKLITEEMVDSMKAGSVIV 281 (511)
T ss_pred HHHHHHHHHHHHhCCCCEEEECc---ccCCCCCCeeehHHHHhhCCCCCEEE
Confidence 110 15699998754 33333333345667788899999876
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=92.38 E-value=0.34 Score=44.11 Aligned_cols=56 Identities=14% Similarity=0.268 Sum_probs=39.3
Q ss_pred hhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHH
Q 014247 95 VRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANE 152 (428)
Q Consensus 95 ~r~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~ 152 (428)
.....+.+.+.+.. ..+|..|||.=||+|..+..+.+.|- +.+|+|++ ..++.|++
T Consensus 175 ~kP~~l~~~lI~~~-t~~gdiVlDpF~GSGTT~~aa~~l~R-~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 175 QKPVELIERLIKAS-TNPGDIVLDPFAGSGTTAVAAEELGR-RYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp -S-HHHHHHHHHHH-S-TT-EEEETT-TTTHHHHHHHHTT--EEEEEESSHHHHHHHHH
T ss_pred cCCHHHHHHHHHhh-hccceeeehhhhccChHHHHHHHcCC-eEEEEeCCHHHHHHhcC
Confidence 33444555555544 36789999999999999999888866 89999999 88887764
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=91.82 E-value=0.33 Score=48.01 Aligned_cols=97 Identities=23% Similarity=0.176 Sum_probs=55.7
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccc----ccccCCCcee
Q 014247 108 QSFIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRV----EDVEIDEEVD 180 (428)
Q Consensus 108 ~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~----~~l~~~~~~D 180 (428)
....++.+||-.|||. |.++..+|+. |+++|+++|.+ ...+.+++ .|...-+.....+. .++.....+|
T Consensus 172 ~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~i~~~~~~~g~d 247 (358)
T TIGR03451 172 GGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE----FGATHTVNSSGTDPVEAIRALTGGFGAD 247 (358)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCceEEcCCCcCHHHHHHHHhCCCCCC
Confidence 3456789999998753 5555666665 77679999998 66555543 33311111111111 1111124689
Q ss_pred EEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 181 VIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 181 lVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
+|+-.. + . ...+....+.|++||+++..
T Consensus 248 ~vid~~-g----~----~~~~~~~~~~~~~~G~iv~~ 275 (358)
T TIGR03451 248 VVIDAV-G----R----PETYKQAFYARDLAGTVVLV 275 (358)
T ss_pred EEEECC-C----C----HHHHHHHHHHhccCCEEEEE
Confidence 998532 1 1 12344456789999988753
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=91.66 E-value=0.37 Score=47.91 Aligned_cols=96 Identities=26% Similarity=0.289 Sum_probs=55.2
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccc----ccccCCCcee
Q 014247 108 QSFIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRV----EDVEIDEEVD 180 (428)
Q Consensus 108 ~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~----~~l~~~~~~D 180 (428)
....++.+||-.|+|. |.++..+|+. |+++|+++|.+ .-.+.+++ .|...-+.....+. .++. .+.+|
T Consensus 187 ~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~i~~~~-~~g~d 261 (371)
T cd08281 187 AGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE----LGATATVNAGDPNAVEQVRELT-GGGVD 261 (371)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH----cCCceEeCCCchhHHHHHHHHh-CCCCC
Confidence 3456788999999763 4555556665 77679999998 66655543 33321111111111 1111 23689
Q ss_pred EEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 181 VIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 181 lVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
+|+-.. + . ...+....+.|+++|+++..
T Consensus 262 ~vid~~-G----~----~~~~~~~~~~l~~~G~iv~~ 289 (371)
T cd08281 262 YAFEMA-G----S----VPALETAYEITRRGGTTVTA 289 (371)
T ss_pred EEEECC-C----C----hHHHHHHHHHHhcCCEEEEE
Confidence 998632 1 1 12344556789999988753
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.66 E-value=0.6 Score=45.67 Aligned_cols=54 Identities=28% Similarity=0.339 Sum_probs=38.6
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHH
Q 014247 100 YRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEV 153 (428)
Q Consensus 100 ~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~ 153 (428)
+.+.|.......+-..|.|+|.|.|.++.+++-...-.|+|||-| ...+.|++.
T Consensus 141 lselvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~rL 195 (476)
T KOG2651|consen 141 LSELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQRL 195 (476)
T ss_pred HHHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHHH
Confidence 333444333334557899999999999999987633389999999 666666553
|
|
| >KOG2078 consensus tRNA modification enzyme [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.40 E-value=0.17 Score=50.13 Aligned_cols=62 Identities=27% Similarity=0.392 Sum_probs=55.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCc-EEEEEcccccc
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDK-VIVLHGRVEDV 173 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~-v~~~~~d~~~l 173 (428)
.+|..|-|+-||.|.++..+++.++ +|++-|.+ ++++..+.++..|.+... |+++..|+.+.
T Consensus 248 k~gevv~D~FaGvGPfa~Pa~kK~c-rV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~F 311 (495)
T KOG2078|consen 248 KPGEVVCDVFAGVGPFALPAAKKGC-RVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDF 311 (495)
T ss_pred CCcchhhhhhcCcCccccchhhcCc-EEEecCCCHHHHHHHHHhccccccchhheeeecccHHHH
Confidence 7889999999999999999999985 99999999 999999999988888666 88888887654
|
|
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=91.30 E-value=0.57 Score=44.54 Aligned_cols=95 Identities=28% Similarity=0.252 Sum_probs=53.8
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEE--cccccccCCCceeEEEE
Q 014247 110 FIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLH--GRVEDVEIDEEVDVIIS 184 (428)
Q Consensus 110 ~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~--~d~~~l~~~~~~DlVvs 184 (428)
..++.+||-+|+|. |.++..+|++ |+++|+++|.+ .-.+.+++ .+...-+.... ..+.++.....+|+|+-
T Consensus 118 ~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid 193 (280)
T TIGR03366 118 DLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALS----FGATALAEPEVLAERQGGLQNGRGVDVALE 193 (280)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCcEecCchhhHHHHHHHhCCCCCCEEEE
Confidence 35788999998863 4555556665 77679999988 55554443 23311111000 01111212246899885
Q ss_pred ecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 185 EWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 185 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
.. + -...+....+.|+++|+++.-
T Consensus 194 ~~-G--------~~~~~~~~~~~l~~~G~iv~~ 217 (280)
T TIGR03366 194 FS-G--------ATAAVRACLESLDVGGTAVLA 217 (280)
T ss_pred CC-C--------ChHHHHHHHHHhcCCCEEEEe
Confidence 32 1 123455566789999988743
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=91.14 E-value=1.4 Score=44.43 Aligned_cols=97 Identities=23% Similarity=0.277 Sum_probs=57.4
Q ss_pred HHHHHHhccC-CCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC
Q 014247 100 YRAAIMQNQS-FIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI 175 (428)
Q Consensus 100 ~~~~i~~~~~-~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~ 175 (428)
..+.+.+..+ ..+|++|+-+|||. |.....+++. |+ +|+.+|.+ .-+..|++ .|. ... +..+.-
T Consensus 188 ~~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A~~----~G~----~~~--~~~e~v- 255 (413)
T cd00401 188 LIDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQAAM----EGY----EVM--TMEEAV- 255 (413)
T ss_pred hHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHHHh----cCC----EEc--cHHHHH-
Confidence 3445555433 36899999999996 5555555554 77 79999998 44444433 332 222 122211
Q ss_pred CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 176 DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 176 ~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
..+|+|+... .....+-.+..+.+++||+++..
T Consensus 256 -~~aDVVI~at--------G~~~~i~~~~l~~mk~Ggilvnv 288 (413)
T cd00401 256 -KEGDIFVTTT--------GNKDIITGEHFEQMKDGAIVCNI 288 (413)
T ss_pred -cCCCEEEECC--------CCHHHHHHHHHhcCCCCcEEEEe
Confidence 4579998732 11222223346789999998743
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures [] | Back alignment and domain information |
|---|
Probab=91.11 E-value=2.1 Score=40.38 Aligned_cols=112 Identities=18% Similarity=0.232 Sum_probs=64.9
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcC------CCeEEEEeChHHHHHHHHHHHHCCCCCcEEEEEccccccc
Q 014247 101 RAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAG------AKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDVE 174 (428)
Q Consensus 101 ~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g------~~~V~giD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~ 174 (428)
...+.+.--..+...++|+|||.|.++.++++.- ...++.||-...-..+-..++.......++=+..|+.++.
T Consensus 7 i~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K~D~~~~~~~~~~~~~R~riDI~dl~ 86 (259)
T PF05206_consen 7 IGNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHKADNKIRKDESEPKFERLRIDIKDLD 86 (259)
T ss_pred HHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccccchhhhhccCCCCceEEEEEEeeccc
Confidence 3344443333567799999999999999999862 2378999986222233333443332234677778888876
Q ss_pred CC---C---ceeEEEEecchhhhcchhhHHHHHHHHhcccc-------cCeEEE
Q 014247 175 ID---E---EVDVIISEWMGYMLLYESMLGSVITARDRWLK-------RGGLIL 215 (428)
Q Consensus 175 ~~---~---~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~Lk-------pgG~lv 215 (428)
+. . ...-|+. ++-.|.+.. .+-.|+.+.+..+ ..|.++
T Consensus 87 l~~~~~~~~~~~~vv~--isKHLCG~A-TDlaLRcl~~~~~~~~~~~~~~gi~i 137 (259)
T PF05206_consen 87 LSKLPELQNDEKPVVA--ISKHLCGAA-TDLALRCLLNSQKLSEGNGSVRGIVI 137 (259)
T ss_pred hhhcccccCCCCcEEE--EEccccccc-hhHHHHhhccCccccccCCccCeEEE
Confidence 53 1 1222222 223444443 4555666655443 456655
|
The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing |
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=90.89 E-value=0.59 Score=45.61 Aligned_cols=96 Identities=19% Similarity=0.131 Sum_probs=53.9
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcc---cccccCCCceeE
Q 014247 108 QSFIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGR---VEDVEIDEEVDV 181 (428)
Q Consensus 108 ~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d---~~~l~~~~~~Dl 181 (428)
....++.+||-+|+|. |.++..++++ |+++|++++.+ +..+.+++ .|....+.....+ +.++.....+|+
T Consensus 159 ~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~~~~~~~~~~d~ 234 (339)
T cd08239 159 VGVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKA----LGADFVINSGQDDVQEIRELTSGAGADV 234 (339)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCCEEEcCCcchHHHHHHHhCCCCCCE
Confidence 3456789999998753 4455555554 77569999988 65555543 2332111111111 111112247999
Q ss_pred EEEecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 182 IISEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 182 Vvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
|+-.. . -...+....+.|+++|+++.
T Consensus 235 vid~~-----g----~~~~~~~~~~~l~~~G~~v~ 260 (339)
T cd08239 235 AIECS-----G----NTAARRLALEAVRPWGRLVL 260 (339)
T ss_pred EEECC-----C----CHHHHHHHHHHhhcCCEEEE
Confidence 98632 1 11233445577899998874
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=90.89 E-value=0.92 Score=44.51 Aligned_cols=91 Identities=14% Similarity=0.098 Sum_probs=53.7
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHH--cCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEEe
Q 014247 110 FIEGKVVVDVGCGT-GILSIFCAQ--AGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISE 185 (428)
Q Consensus 110 ~~~~~~VLDiGcGt-G~ls~~la~--~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~ 185 (428)
..++.+||-+|||. |.++..+++ .|+.+|+++|.+ .-++.|++ .+. ...+ .++.....+|+|+-.
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~---~~~~----~~~~~~~g~d~viD~ 229 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE---TYLI----DDIPEDLAVDHAFEC 229 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc---eeeh----hhhhhccCCcEEEEC
Confidence 36789999999874 445555555 356689999998 65555543 111 1111 111111248998853
Q ss_pred cchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 186 WMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 186 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
. + .. ..+..+....++|++||+++.-
T Consensus 230 ~-G----~~-~~~~~~~~~~~~l~~~G~iv~~ 255 (341)
T cd08237 230 V-G----GR-GSQSAINQIIDYIRPQGTIGLM 255 (341)
T ss_pred C-C----CC-ccHHHHHHHHHhCcCCcEEEEE
Confidence 2 1 11 1234566667889999998753
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=90.88 E-value=0.23 Score=39.95 Aligned_cols=40 Identities=18% Similarity=0.223 Sum_probs=28.4
Q ss_pred ceeEEEEecchhhh---cchhhHHHHHHHHhcccccCeEEEcc
Q 014247 178 EVDVIISEWMGYML---LYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 178 ~~DlVvs~~~~~~l---~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
+||+|+|-.+.-.+ .+..-+..+++.+...|+|||.+++.
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence 58999994432111 12234889999999999999999965
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=90.72 E-value=0.69 Score=44.69 Aligned_cols=85 Identities=25% Similarity=0.197 Sum_probs=51.7
Q ss_pred CCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEEecc
Q 014247 111 IEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWM 187 (428)
Q Consensus 111 ~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~~~ 187 (428)
.++.+||-+|||. |.++..+|++ |++.|+++|.+ ..++.|.+. . ++ |..+. ....+|+|+-..
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~----~------~i--~~~~~-~~~g~Dvvid~~- 208 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY----E------VL--DPEKD-PRRDYRAIYDAS- 208 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc----c------cc--Chhhc-cCCCCCEEEECC-
Confidence 3577899999874 6666667765 88778888887 555444321 1 11 11110 124689988632
Q ss_pred hhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 188 GYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 188 ~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
+ . ...+....++|+++|+++..
T Consensus 209 G----~----~~~~~~~~~~l~~~G~iv~~ 230 (308)
T TIGR01202 209 G----D----PSLIDTLVRRLAKGGEIVLA 230 (308)
T ss_pred C----C----HHHHHHHHHhhhcCcEEEEE
Confidence 1 1 23445666789999998853
|
|
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=90.59 E-value=0.8 Score=45.13 Aligned_cols=92 Identities=21% Similarity=0.242 Sum_probs=52.4
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeC---h-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEE
Q 014247 110 FIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDA---S-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVII 183 (428)
Q Consensus 110 ~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~---s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVv 183 (428)
..++.+||-+|+|. |.++..+|++ |+ +|++++. + .-.+.+ ++.|.. .+.....+..+......+|+|+
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~----~~~Ga~-~v~~~~~~~~~~~~~~~~d~vi 243 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIV----EELGAT-YVNSSKTPVAEVKLVGEFDLII 243 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHH----HHcCCE-EecCCccchhhhhhcCCCCEEE
Confidence 35788999999864 5566666665 77 7999986 4 333333 333331 1111111111111125689988
Q ss_pred EecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 184 SEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 184 s~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
-.. + . ...+....+.|++||+++.
T Consensus 244 d~~-g----~----~~~~~~~~~~l~~~G~~v~ 267 (355)
T cd08230 244 EAT-G----V----PPLAFEALPALAPNGVVIL 267 (355)
T ss_pred ECc-C----C----HHHHHHHHHHccCCcEEEE
Confidence 632 1 1 1245666788999998874
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 | Back alignment and domain information |
|---|
Probab=90.50 E-value=0.51 Score=45.76 Aligned_cols=64 Identities=27% Similarity=0.368 Sum_probs=49.2
Q ss_pred EEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC---CceeEEEEec
Q 014247 115 VVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID---EEVDVIISEW 186 (428)
Q Consensus 115 ~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~---~~~DlVvs~~ 186 (428)
+++|+=||.|.+++-+.++|.+.|.++|++ ..++.-+.+.. .+..+|+.++... ..+|+++..+
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~~l~~~~D~l~ggp 69 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP--------EVICGDITEIDPSDLPKDVDLLIGGP 69 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHHHHHHT-SEEEEE-
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc--------ccccccccccccccccccceEEEecc
Confidence 699999999999999999999899999999 66555555542 7788899887532 2599999865
|
1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... |
| >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=90.39 E-value=1.2 Score=41.87 Aligned_cols=70 Identities=21% Similarity=0.235 Sum_probs=44.3
Q ss_pred CCEEEEEcCCCcHHHHHHHHc-C--------CCeEEEEeCh-HHHHHHHHHHHHC-----CCCCcEEEEEcccccccCCC
Q 014247 113 GKVVVDVGCGTGILSIFCAQA-G--------AKRVYAVDAS-DIAVQANEVVKAN-----NLTDKVIVLHGRVEDVEIDE 177 (428)
Q Consensus 113 ~~~VLDiGcGtG~ls~~la~~-g--------~~~V~giD~s-~~~~~a~~~~~~~-----~~~~~v~~~~~d~~~l~~~~ 177 (428)
..+|+|+|+|+|.++..+.+. . ..+++.||+| .+.+..++.+... ....+|.++ .++.+.+
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i~w~-~~l~~~p--- 94 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPIRWL-DDLEEVP--- 94 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCEEEE-SSGGCS----
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccCCccchh-hhhhccc---
Confidence 469999999999999888774 1 2389999999 7776666665431 233456663 3454443
Q ss_pred ceeEEEEec
Q 014247 178 EVDVIISEW 186 (428)
Q Consensus 178 ~~DlVvs~~ 186 (428)
..-+|+++-
T Consensus 95 ~~~~iiaNE 103 (252)
T PF02636_consen 95 FPGFIIANE 103 (252)
T ss_dssp CCEEEEEES
T ss_pred CCEEEEEee
Confidence 456677655
|
; PDB: 4F3N_A 1ZKD_B. |
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.28 E-value=8.4 Score=35.78 Aligned_cols=107 Identities=20% Similarity=0.186 Sum_probs=66.7
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHc----C-CCeEEEEeCh-HHHHH-HHHHHHHCCCCCcEEEEEcccccc--cCCCcee
Q 014247 110 FIEGKVVVDVGCGTGILSIFCAQA----G-AKRVYAVDAS-DIAVQ-ANEVVKANNLTDKVIVLHGRVEDV--EIDEEVD 180 (428)
Q Consensus 110 ~~~~~~VLDiGcGtG~ls~~la~~----g-~~~V~giD~s-~~~~~-a~~~~~~~~~~~~v~~~~~d~~~l--~~~~~~D 180 (428)
...+...+|+|+|+..-+..+..+ | ..+.+.||++ .++.. |+...+... .-.|.-+++|.+.- .+++.--
T Consensus 76 ~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~-~l~v~~l~~~~~~~La~~~~~~~ 154 (321)
T COG4301 76 ITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYP-GLEVNALCGDYELALAELPRGGR 154 (321)
T ss_pred hhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCC-CCeEeehhhhHHHHHhcccCCCe
Confidence 355789999999998766665543 2 3489999999 76665 444544432 22366667775531 1122222
Q ss_pred EEEEecchhhhcch--hhHHHHHHHHhcccccCeEEEccC
Q 014247 181 VIISEWMGYMLLYE--SMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 181 lVvs~~~~~~l~~~--~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
-+++- +++.+.+. ..-..++.++...|+||-.+++..
T Consensus 155 Rl~~f-lGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGv 193 (321)
T COG4301 155 RLFVF-LGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGV 193 (321)
T ss_pred EEEEE-ecccccCCChHHHHHHHHHHHhcCCCcceEEEec
Confidence 22221 34344332 446778999999999999888754
|
|
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=89.99 E-value=0.64 Score=45.08 Aligned_cols=97 Identities=24% Similarity=0.259 Sum_probs=57.5
Q ss_pred ccCCCCCCEEEEEcCC-CcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccc---cccCCCcee
Q 014247 107 NQSFIEGKVVVDVGCG-TGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVE---DVEIDEEVD 180 (428)
Q Consensus 107 ~~~~~~~~~VLDiGcG-tG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~---~l~~~~~~D 180 (428)
.....++.+||..|+| .|..+..+|+. |. +|++++.+ ...+.+++ .+....+.....+.. .......+|
T Consensus 160 ~~~~~~~~~vli~g~g~vG~~~~~la~~~G~-~V~~~~~s~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~D 234 (338)
T cd08254 160 AGEVKPGETVLVIGLGGLGLNAVQIAKAMGA-AVIAVDIKEEKLELAKE----LGADEVLNSLDDSPKDKKAAGLGGGFD 234 (338)
T ss_pred ccCCCCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHH----hCCCEEEcCCCcCHHHHHHHhcCCCce
Confidence 3345678899998876 36677777775 66 69999988 66655543 333211111110110 011235799
Q ss_pred EEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 181 VIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 181 lVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
+|+... . ....+..+.+.|+++|.++..
T Consensus 235 ~vid~~-----g----~~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 235 VIFDFV-----G----TQPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred EEEECC-----C----CHHHHHHHHHHhhcCCEEEEE
Confidence 988632 1 123566677899999998753
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=89.58 E-value=0.95 Score=42.04 Aligned_cols=93 Identities=27% Similarity=0.341 Sum_probs=54.0
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccc---ccCCCceeEEE
Q 014247 110 FIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVED---VEIDEEVDVII 183 (428)
Q Consensus 110 ~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~---l~~~~~~DlVv 183 (428)
..++.+||..|+|. |.....+++. | .+|++++.+ ...+.+++ .+....+.....+... ....+.+|+|+
T Consensus 132 ~~~~~~vli~g~~~~G~~~~~~a~~~g-~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi 206 (271)
T cd05188 132 LKPGDTVLVLGAGGVGLLAAQLAKAAG-ARVIVTDRSDEKLELAKE----LGADHVIDYKEEDLEEELRLTGGGGADVVI 206 (271)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CeEEEEcCCHHHHHHHHH----hCCceeccCCcCCHHHHHHHhcCCCCCEEE
Confidence 36789999999996 6566666665 5 489999998 65555433 2221111111111100 11236799999
Q ss_pred EecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 184 SEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 184 s~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
... + .. ..+..+.+.|+++|.++.
T Consensus 207 ~~~-~----~~----~~~~~~~~~l~~~G~~v~ 230 (271)
T cd05188 207 DAV-G----GP----ETLAQALRLLRPGGRIVV 230 (271)
T ss_pred ECC-C----CH----HHHHHHHHhcccCCEEEE
Confidence 643 1 10 234555677899998874
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >PLN02740 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=89.50 E-value=2.1 Score=42.65 Aligned_cols=92 Identities=23% Similarity=0.266 Sum_probs=53.6
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcc-----c----ccccC
Q 014247 108 QSFIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGR-----V----EDVEI 175 (428)
Q Consensus 108 ~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d-----~----~~l~~ 175 (428)
....++.+||-+|||. |.++..+|+. |+++|+++|.+ +-.+.+++ .|.. .++... . .++.
T Consensus 194 ~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~---~~i~~~~~~~~~~~~v~~~~- 265 (381)
T PLN02740 194 ANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE----MGIT---DFINPKDSDKPVHERIREMT- 265 (381)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH----cCCc---EEEecccccchHHHHHHHHh-
Confidence 4457889999999863 4455556665 77679999998 66666543 2332 122211 1 1111
Q ss_pred CCceeEEEEecchhhhcchhhHHHHHHHHhcccccC-eEEEc
Q 014247 176 DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRG-GLILP 216 (428)
Q Consensus 176 ~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~lv~ 216 (428)
.+.+|+|+-.. + . ...+......+++| |+++.
T Consensus 266 ~~g~dvvid~~-G----~----~~~~~~a~~~~~~g~G~~v~ 298 (381)
T PLN02740 266 GGGVDYSFECA-G----N----VEVLREAFLSTHDGWGLTVL 298 (381)
T ss_pred CCCCCEEEECC-C----C----hHHHHHHHHhhhcCCCEEEE
Confidence 13699998632 1 1 12344455677886 87764
|
|
| >PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues | Back alignment and domain information |
|---|
Probab=89.08 E-value=0.98 Score=40.15 Aligned_cols=109 Identities=16% Similarity=0.187 Sum_probs=64.2
Q ss_pred hhHHHHHHHHHhccCCCCCC-EEEEEcCCCcHHHHHHHHc-CCCeEEEEeChHHHHHHHHHHHHCCCC--CcEEEEEccc
Q 014247 95 VRTETYRAAIMQNQSFIEGK-VVVDVGCGTGILSIFCAQA-GAKRVYAVDASDIAVQANEVVKANNLT--DKVIVLHGRV 170 (428)
Q Consensus 95 ~r~~~~~~~i~~~~~~~~~~-~VLDiGcGtG~ls~~la~~-g~~~V~giD~s~~~~~a~~~~~~~~~~--~~v~~~~~d~ 170 (428)
.|+..+.+.+.+.+...++. .|+.+|||-=.....+... +..+++-+|..++++.-++.+...+.. .+.+++.+|+
T Consensus 60 ~Rt~~iD~~v~~~i~~~~~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl 139 (183)
T PF04072_consen 60 ARTRYIDDAVREFIAKHPGARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPADL 139 (183)
T ss_dssp HHHHHHHHHHHHHHHHHTTESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-T
T ss_pred HHHHHHHHHHHHhhccCCCCcEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccc
Confidence 55566666666665433444 8999999998888888775 233677777777777766666655321 2356788888
Q ss_pred ccccC----------CCceeEEEEecchhhhcchhhHHHHHHHH
Q 014247 171 EDVEI----------DEEVDVIISEWMGYMLLYESMLGSVITAR 204 (428)
Q Consensus 171 ~~l~~----------~~~~DlVvs~~~~~~l~~~~~~~~~l~~~ 204 (428)
.+... +...-+++++.+..++. ......+++.+
T Consensus 140 ~~~~~~~~L~~~g~~~~~ptl~i~Egvl~Yl~-~~~~~~ll~~i 182 (183)
T PF04072_consen 140 RDDSWIDALPKAGFDPDRPTLFIAEGVLMYLS-PEQVDALLRAI 182 (183)
T ss_dssp TSHHHHHHHHHCTT-TTSEEEEEEESSGGGS--HHHHHHHHHHH
T ss_pred cchhhHHHHHHhCCCCCCCeEEEEcchhhcCC-HHHHHHHHHHh
Confidence 75311 25566888887554443 33356666543
|
It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A .... |
| >TIGR00675 dcm DNA-methyltransferase (dcm) | Back alignment and domain information |
|---|
Probab=88.86 E-value=0.49 Score=46.05 Aligned_cols=64 Identities=19% Similarity=0.294 Sum_probs=47.7
Q ss_pred EEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC--CceeEEEEec
Q 014247 116 VVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID--EEVDVIISEW 186 (428)
Q Consensus 116 VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~--~~~DlVvs~~ 186 (428)
|+|+-||.|.++.-+.++|..-+.++|++ ..++.-+.+. .+ .++.+|+.++... ..+|+++..+
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~-----~~--~~~~~Di~~~~~~~~~~~dvl~gg~ 67 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANF-----GN--KVPFGDITKISPSDIPDFDILLGGF 67 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhC-----CC--CCCccChhhhhhhhCCCcCEEEecC
Confidence 68999999999999999999778899999 5555544442 22 4456788877532 4689998854
|
All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=88.69 E-value=1.3 Score=47.74 Aligned_cols=105 Identities=13% Similarity=0.109 Sum_probs=62.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-------CC------CeEEEEeCh----HHHHHH-----------HHHHHH-----C
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQA-------GA------KRVYAVDAS----DIAVQA-----------NEVVKA-----N 157 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~-------g~------~~V~giD~s----~~~~~a-----------~~~~~~-----~ 157 (428)
.+.-+|||+|-|+|...+.+.+. .. -+++++|.. +.+..+ .+.... .
T Consensus 56 ~~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (662)
T PRK01747 56 RRRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLP 135 (662)
T ss_pred CCcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCC
Confidence 34469999999999865554421 11 278899963 222221 122111 1
Q ss_pred CC------CC--cEEEEEcccccccC--CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEE
Q 014247 158 NL------TD--KVIVLHGRVEDVEI--DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLIL 215 (428)
Q Consensus 158 ~~------~~--~v~~~~~d~~~l~~--~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv 215 (428)
++ .+ .++++.+|+.+.-. ...+|+++...+.-.-..+---+++++.+.++++|||.+.
T Consensus 136 g~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~ 203 (662)
T PRK01747 136 GCHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLA 203 (662)
T ss_pred CceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEE
Confidence 21 11 35677788766322 2579999987532222222224678999999999999987
|
|
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.10 E-value=1.5 Score=41.98 Aligned_cols=94 Identities=22% Similarity=0.244 Sum_probs=66.0
Q ss_pred CCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC-CceeEEEEecch
Q 014247 113 GKVVVDVGCGT-GILSIFCAQ-AGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID-EEVDVIISEWMG 188 (428)
Q Consensus 113 ~~~VLDiGcGt-G~ls~~la~-~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~-~~~DlVvs~~~~ 188 (428)
..+|.-||.|. |..+..+|- .|+ +|+.+|+| +-+......+ ..++..+.....++... .+.|+||...
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA-~Vtild~n~~rl~~ldd~f-----~~rv~~~~st~~~iee~v~~aDlvIgaV-- 239 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGA-DVTILDLNIDRLRQLDDLF-----GGRVHTLYSTPSNIEEAVKKADLVIGAV-- 239 (371)
T ss_pred CccEEEECCccccchHHHHHhccCC-eeEEEecCHHHHhhhhHhh-----CceeEEEEcCHHHHHHHhhhccEEEEEE--
Confidence 35677788775 444444443 356 89999999 6665544332 34678887777666544 7899999865
Q ss_pred hhhcchhhHHHHHHHHhcccccCeEEE
Q 014247 189 YMLLYESMLGSVITARDRWLKRGGLIL 215 (428)
Q Consensus 189 ~~l~~~~~~~~~l~~~~~~LkpgG~lv 215 (428)
.+.....+.-+.+++...+|||+.++
T Consensus 240 -LIpgakaPkLvt~e~vk~MkpGsViv 265 (371)
T COG0686 240 -LIPGAKAPKLVTREMVKQMKPGSVIV 265 (371)
T ss_pred -EecCCCCceehhHHHHHhcCCCcEEE
Confidence 55566667777888889999999887
|
|
| >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.93 E-value=1.3 Score=43.45 Aligned_cols=96 Identities=25% Similarity=0.268 Sum_probs=52.4
Q ss_pred CCCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcc---cccccCCCcee-E
Q 014247 109 SFIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGR---VEDVEIDEEVD-V 181 (428)
Q Consensus 109 ~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d---~~~l~~~~~~D-l 181 (428)
...++.+||-.|||. |.++..+|++ |++.|++++.+ +-.+.+++ .+...-+.....+ +.++.....+| +
T Consensus 157 ~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~~~~~~~~d~~ 232 (347)
T PRK10309 157 QGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKS----LGAMQTFNSREMSAPQIQSVLRELRFDQL 232 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCceEecCcccCHHHHHHHhcCCCCCeE
Confidence 446788999998764 4455555664 77668999988 65554432 2321111111111 11111124677 5
Q ss_pred EEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 182 IISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 182 Vvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
|+- ..+ . ...+....+.|++||+++..
T Consensus 233 v~d-~~G----~----~~~~~~~~~~l~~~G~iv~~ 259 (347)
T PRK10309 233 ILE-TAG----V----PQTVELAIEIAGPRAQLALV 259 (347)
T ss_pred EEE-CCC----C----HHHHHHHHHHhhcCCEEEEE
Confidence 443 222 1 23455566788999998754
|
|
| >cd08232 idonate-5-DH L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=87.37 E-value=2.6 Score=40.97 Aligned_cols=90 Identities=21% Similarity=0.316 Sum_probs=54.0
Q ss_pred CCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcc---cccccC-CCceeEEE
Q 014247 111 IEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGR---VEDVEI-DEEVDVII 183 (428)
Q Consensus 111 ~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d---~~~l~~-~~~~DlVv 183 (428)
.++.+||..|||. |..+..+++. |+.+|++++.+ ...+.+++ .+.. .++..+ ...+.. ...+|+|+
T Consensus 164 ~~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~----~g~~---~vi~~~~~~~~~~~~~~~~vd~vl 236 (339)
T cd08232 164 LAGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARA----MGAD---ETVNLARDPLAAYAADKGDFDVVF 236 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----cCCC---EEEcCCchhhhhhhccCCCccEEE
Confidence 4788999998875 5566666665 77679999988 66554433 2321 222211 112221 24599999
Q ss_pred EecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 184 SEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 184 s~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
... + . ...+....+.|+++|+++.
T Consensus 237 d~~-g----~----~~~~~~~~~~L~~~G~~v~ 260 (339)
T cd08232 237 EAS-G----A----PAALASALRVVRPGGTVVQ 260 (339)
T ss_pred ECC-C----C----HHHHHHHHHHHhcCCEEEE
Confidence 632 1 0 2235566788999999874
|
L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai |
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=87.25 E-value=5.1 Score=36.18 Aligned_cols=34 Identities=32% Similarity=0.406 Sum_probs=27.0
Q ss_pred CCCCEEEEEcCCC-c-HHHHHHHHcCCCeEEEEeCh
Q 014247 111 IEGKVVVDVGCGT-G-ILSIFCAQAGAKRVYAVDAS 144 (428)
Q Consensus 111 ~~~~~VLDiGcGt-G-~ls~~la~~g~~~V~giD~s 144 (428)
....+|+-+|||. | ..+..+++.|.++++.+|.+
T Consensus 19 L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 19 LEQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred HhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 3457899999985 3 46777888899889998876
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=87.04 E-value=3.7 Score=36.35 Aligned_cols=98 Identities=17% Similarity=0.242 Sum_probs=62.3
Q ss_pred EEEEEcCCCc--HHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHH-------CC-CC--------CcEEEEEcccccccC
Q 014247 115 VVVDVGCGTG--ILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKA-------NN-LT--------DKVIVLHGRVEDVEI 175 (428)
Q Consensus 115 ~VLDiGcGtG--~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~-------~~-~~--------~~v~~~~~d~~~l~~ 175 (428)
+|.-||+|+= .++..++..|. +|+.+|.+ +.++.+++.+.. .+ +. .++.+. .|+.++.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~dl~~~~- 77 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY-EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFT-TDLEEAV- 77 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS-EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEE-SSGGGGC-
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC-cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccc-cCHHHHh-
Confidence 4677899863 46667777787 99999999 888877776554 11 11 235533 4555443
Q ss_pred CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCee
Q 014247 176 DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATL 221 (428)
Q Consensus 176 ~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 221 (428)
..|+|+=. .......-.++++++.+.+.|+.+|.-.+.++
T Consensus 78 --~adlViEa----i~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl 117 (180)
T PF02737_consen 78 --DADLVIEA----IPEDLELKQELFAELDEICPPDTILASNTSSL 117 (180)
T ss_dssp --TESEEEE-----S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS
T ss_pred --hhheehhh----ccccHHHHHHHHHHHHHHhCCCceEEecCCCC
Confidence 68998853 34444557889999999999999988665544
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=86.88 E-value=0.71 Score=44.20 Aligned_cols=55 Identities=25% Similarity=0.276 Sum_probs=38.4
Q ss_pred EEEEEcccccc--cC-CCceeEEEEecchhhh-------------cchhhHHHHHHHHhcccccCeEEEcc
Q 014247 163 VIVLHGRVEDV--EI-DEEVDVIISEWMGYML-------------LYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 163 v~~~~~d~~~l--~~-~~~~DlVvs~~~~~~l-------------~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
..++++|+.++ .+ +++||+|++++..... .+...+..++.++.++|||||.+++.
T Consensus 9 ~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 9 KTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred CEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 57888998774 22 3789999998632110 01122467889999999999998863
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=86.81 E-value=3.9 Score=36.97 Aligned_cols=34 Identities=26% Similarity=0.438 Sum_probs=27.2
Q ss_pred CCCCEEEEEcCCC-c-HHHHHHHHcCCCeEEEEeCh
Q 014247 111 IEGKVVVDVGCGT-G-ILSIFCAQAGAKRVYAVDAS 144 (428)
Q Consensus 111 ~~~~~VLDiGcGt-G-~ls~~la~~g~~~V~giD~s 144 (428)
....+||-+|||. | ..+..|++.|.++++.+|.+
T Consensus 19 l~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 19 LLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 4567899999994 3 46677888899999999976
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=86.78 E-value=1.8 Score=35.54 Aligned_cols=81 Identities=27% Similarity=0.300 Sum_probs=50.8
Q ss_pred CCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccc-------cccCCCceeEEEEecchhhhc
Q 014247 122 GTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVE-------DVEIDEEVDVIISEWMGYMLL 192 (428)
Q Consensus 122 GtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~-------~l~~~~~~DlVvs~~~~~~l~ 192 (428)
|.|.++..+|+. | .+|+++|.+ .-.+.+++ .|. -.++..+-. ++.....+|+|+-.. .
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~----~Ga---~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~-----g 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKE----LGA---DHVIDYSDDDFVEQIRELTGGRGVDVVIDCV-----G 67 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHH----TTE---SEEEETTTSSHHHHHHHHTTTSSEEEEEESS-----S
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHh----hcc---cccccccccccccccccccccccceEEEEec-----C
Confidence 457888888887 7 699999999 66555543 332 122322222 112224799998632 1
Q ss_pred chhhHHHHHHHHhcccccCeEEEccCC
Q 014247 193 YESMLGSVITARDRWLKRGGLILPSYA 219 (428)
Q Consensus 193 ~~~~~~~~l~~~~~~LkpgG~lv~~~~ 219 (428)
-...++....+|+++|+++.-..
T Consensus 68 ----~~~~~~~~~~~l~~~G~~v~vg~ 90 (130)
T PF00107_consen 68 ----SGDTLQEAIKLLRPGGRIVVVGV 90 (130)
T ss_dssp ----SHHHHHHHHHHEEEEEEEEEESS
T ss_pred ----cHHHHHHHHHHhccCCEEEEEEc
Confidence 13456677788999999886443
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >PLN02827 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=86.38 E-value=3.4 Score=41.20 Aligned_cols=95 Identities=23% Similarity=0.254 Sum_probs=53.1
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEE--cccc----cccCCCc
Q 014247 108 QSFIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLH--GRVE----DVEIDEE 178 (428)
Q Consensus 108 ~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~--~d~~----~l~~~~~ 178 (428)
....++.+||-.|+|. |.++..+|++ |+..|+++|.+ +..+.|++ .|...-+.... .+.. ++. .+.
T Consensus 189 ~~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~----lGa~~~i~~~~~~~~~~~~v~~~~-~~g 263 (378)
T PLN02827 189 ADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKT----FGVTDFINPNDLSEPIQQVIKRMT-GGG 263 (378)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCcEEEcccccchHHHHHHHHHh-CCC
Confidence 3456789999998754 4455555654 77679999988 65555533 34321111111 0111 111 136
Q ss_pred eeEEEEecchhhhcchhhHHHHHHHHhcccccC-eEEEc
Q 014247 179 VDVIISEWMGYMLLYESMLGSVITARDRWLKRG-GLILP 216 (428)
Q Consensus 179 ~DlVvs~~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~lv~ 216 (428)
+|+|+-.. + . ...+....++|++| |+++.
T Consensus 264 ~d~vid~~-G----~----~~~~~~~l~~l~~g~G~iv~ 293 (378)
T PLN02827 264 ADYSFECV-G----D----TGIATTALQSCSDGWGLTVT 293 (378)
T ss_pred CCEEEECC-C----C----hHHHHHHHHhhccCCCEEEE
Confidence 89988632 1 1 12344455678898 98874
|
|
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=86.22 E-value=5.1 Score=36.57 Aligned_cols=75 Identities=16% Similarity=0.220 Sum_probs=45.7
Q ss_pred CCCCEEEEEcCCC-c-HHHHHHHHcCCCeEEEEeCh-------------------HHHHHHHHHHHHCCCCCcEEEEEcc
Q 014247 111 IEGKVVVDVGCGT-G-ILSIFCAQAGAKRVYAVDAS-------------------DIAVQANEVVKANNLTDKVIVLHGR 169 (428)
Q Consensus 111 ~~~~~VLDiGcGt-G-~ls~~la~~g~~~V~giD~s-------------------~~~~~a~~~~~~~~~~~~v~~~~~d 169 (428)
.+..+|+-+|||. | ..+..+++.|..+++.+|.+ .-++.+.+++.+.+..-+++.+...
T Consensus 26 L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v~v~~~~~~ 105 (212)
T PRK08644 26 LKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFVEIEAHNEK 105 (212)
T ss_pred HhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCCEEEEEeee
Confidence 3557899999994 3 46777888899899999876 1233344444443333335545444
Q ss_pred cccccC---CCceeEEEEe
Q 014247 170 VEDVEI---DEEVDVIISE 185 (428)
Q Consensus 170 ~~~l~~---~~~~DlVvs~ 185 (428)
+..... -..+|+|+..
T Consensus 106 i~~~~~~~~~~~~DvVI~a 124 (212)
T PRK08644 106 IDEDNIEELFKDCDIVVEA 124 (212)
T ss_pred cCHHHHHHHHcCCCEEEEC
Confidence 332111 1579999963
|
|
| >TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=85.96 E-value=4.5 Score=40.10 Aligned_cols=95 Identities=25% Similarity=0.233 Sum_probs=54.2
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEE--ccc----ccccCCCc
Q 014247 108 QSFIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLH--GRV----EDVEIDEE 178 (428)
Q Consensus 108 ~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~--~d~----~~l~~~~~ 178 (428)
....++.+||-.|||. |.++..+|+. |+.+|+++|.+ +-.+.+++ .|...-+.... .++ .++. .+.
T Consensus 181 ~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~----~Ga~~~i~~~~~~~~~~~~v~~~~-~~g 255 (368)
T TIGR02818 181 AKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKK----LGATDCVNPNDYDKPIQEVIVEIT-DGG 255 (368)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCCeEEcccccchhHHHHHHHHh-CCC
Confidence 3457789999999863 5556666665 77689999998 66665543 23321111110 011 1111 136
Q ss_pred eeEEEEecchhhhcchhhHHHHHHHHhcccccC-eEEEc
Q 014247 179 VDVIISEWMGYMLLYESMLGSVITARDRWLKRG-GLILP 216 (428)
Q Consensus 179 ~DlVvs~~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~lv~ 216 (428)
+|+|+-.. + . ...+....+.|+++ |+++.
T Consensus 256 ~d~vid~~-G----~----~~~~~~~~~~~~~~~G~~v~ 285 (368)
T TIGR02818 256 VDYSFECI-G----N----VNVMRAALECCHKGWGESII 285 (368)
T ss_pred CCEEEECC-C----C----HHHHHHHHHHhhcCCCeEEE
Confidence 89888632 1 1 22344555678886 87764
|
The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols. |
| >PRK05854 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.65 E-value=6 Score=38.23 Aligned_cols=75 Identities=19% Similarity=0.202 Sum_probs=50.4
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC-----------
Q 014247 111 IEGKVVVDVGCGTGI---LSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI----------- 175 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~---ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~----------- 175 (428)
..++++|-.|++.|+ ++..+++.|+ +|+.+..+ +-.+.+.+.+....-..++.++.+|+.+...
T Consensus 12 l~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~ 90 (313)
T PRK05854 12 LSGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAE 90 (313)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHh
Confidence 467899999988765 4555666787 89988887 5555555444433222358889999876421
Q ss_pred CCceeEEEEec
Q 014247 176 DEEVDVIISEW 186 (428)
Q Consensus 176 ~~~~DlVvs~~ 186 (428)
.++.|++|.+.
T Consensus 91 ~~~iD~li~nA 101 (313)
T PRK05854 91 GRPIHLLINNA 101 (313)
T ss_pred CCCccEEEECC
Confidence 15689988764
|
|
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.79 E-value=4.4 Score=39.85 Aligned_cols=96 Identities=17% Similarity=0.112 Sum_probs=56.1
Q ss_pred ccCCCCCCEEEEEcC--CCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEc-cccc-cc--CCCc
Q 014247 107 NQSFIEGKVVVDVGC--GTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHG-RVED-VE--IDEE 178 (428)
Q Consensus 107 ~~~~~~~~~VLDiGc--GtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~-d~~~-l~--~~~~ 178 (428)
.....+|.+||-.|+ |.|.++..+|++ |+ +|++++.+ +..+.+++ ..|...-+..... +..+ +. .++.
T Consensus 153 ~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~-~Vi~~~~~~~k~~~~~~---~lGa~~vi~~~~~~~~~~~i~~~~~~g 228 (348)
T PLN03154 153 VCSPKKGDSVFVSAASGAVGQLVGQLAKLHGC-YVVGSAGSSQKVDLLKN---KLGFDEAFNYKEEPDLDAALKRYFPEG 228 (348)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHH---hcCCCEEEECCCcccHHHHHHHHCCCC
Confidence 344578899999998 356777777776 76 79999888 65554432 2333211111111 2111 10 1246
Q ss_pred eeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 179 VDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 179 ~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
+|+|+-.. + . ..+....+.|++||+++.
T Consensus 229 vD~v~d~v-G-----~----~~~~~~~~~l~~~G~iv~ 256 (348)
T PLN03154 229 IDIYFDNV-G-----G----DMLDAALLNMKIHGRIAV 256 (348)
T ss_pred cEEEEECC-C-----H----HHHHHHHHHhccCCEEEE
Confidence 89998532 1 1 234556678999999874
|
|
| >PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function | Back alignment and domain information |
|---|
Probab=84.65 E-value=1.6 Score=36.24 Aligned_cols=79 Identities=16% Similarity=0.159 Sum_probs=48.0
Q ss_pred cEEEEEcccccc-c-CCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhh
Q 014247 162 KVIVLHGRVEDV-E-IDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFW 239 (428)
Q Consensus 162 ~v~~~~~d~~~l-~-~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~ 239 (428)
.+++..+|+.+. + +...||+|+-..+.-.-..+---.++++.+.++++|||.+.-.+
T Consensus 32 ~L~L~~gDa~~~l~~l~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~Tys--------------------- 90 (124)
T PF05430_consen 32 TLTLWFGDAREMLPQLDARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLATYS--------------------- 90 (124)
T ss_dssp EEEEEES-HHHHHHHB-T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEES----------------------
T ss_pred EEEEEEcHHHHHHHhCcccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEEee---------------------
Confidence 367777887653 1 23789999987643222222224678999999999999887321
Q ss_pred hccCCCCcchhHHHHHhcCCCCceEEee
Q 014247 240 RNVYGIDMSAMMPLAKQCAFEEPSVETI 267 (428)
Q Consensus 240 ~~~~~~~~~~l~~~l~~~Gf~~~~~~~~ 267 (428)
....++..|.++||.+....-+
T Consensus 91 ------~a~~Vr~~L~~aGF~v~~~~g~ 112 (124)
T PF05430_consen 91 ------SAGAVRRALQQAGFEVEKVPGF 112 (124)
T ss_dssp -------BHHHHHHHHHCTEEEEEEE-S
T ss_pred ------chHHHHHHHHHcCCEEEEcCCC
Confidence 1234677788999986554433
|
; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A. |
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=84.51 E-value=7.6 Score=37.82 Aligned_cols=90 Identities=22% Similarity=0.143 Sum_probs=52.9
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEE
Q 014247 108 QSFIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIIS 184 (428)
Q Consensus 108 ~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs 184 (428)
....++.+||-.|+|. |.++..+|+. |+ +|++++.+ .-.+.|++ .|... ++. ..+. ..+.+|+++.
T Consensus 161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~-~vi~~~~~~~~~~~a~~----~Ga~~---vi~--~~~~-~~~~~d~~i~ 229 (329)
T TIGR02822 161 ASLPPGGRLGLYGFGGSAHLTAQVALAQGA-TVHVMTRGAAARRLALA----LGAAS---AGG--AYDT-PPEPLDAAIL 229 (329)
T ss_pred cCCCCCCEEEEEcCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHH----hCCce---ecc--cccc-CcccceEEEE
Confidence 3457789999999753 4455556665 76 79999988 55554444 33321 121 1111 1245787663
Q ss_pred ecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 185 EWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 185 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
.. .. ...+....+.|++||+++..
T Consensus 230 ~~---~~------~~~~~~~~~~l~~~G~~v~~ 253 (329)
T TIGR02822 230 FA---PA------GGLVPPALEALDRGGVLAVA 253 (329)
T ss_pred CC---Cc------HHHHHHHHHhhCCCcEEEEE
Confidence 11 11 13456667889999998753
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=84.47 E-value=5.5 Score=36.69 Aligned_cols=75 Identities=23% Similarity=0.285 Sum_probs=45.8
Q ss_pred CCCCEEEEEcCCC-c-HHHHHHHHcCCCeEEEEeCh--------------------HHHHHHHHHHHHCCCCCcEEEEEc
Q 014247 111 IEGKVVVDVGCGT-G-ILSIFCAQAGAKRVYAVDAS--------------------DIAVQANEVVKANNLTDKVIVLHG 168 (428)
Q Consensus 111 ~~~~~VLDiGcGt-G-~ls~~la~~g~~~V~giD~s--------------------~~~~~a~~~~~~~~~~~~v~~~~~ 168 (428)
....+||-+|||. | ..+..|++.|.++++.+|.+ .-++.+.+++++.+..-+++.+..
T Consensus 19 L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~~ 98 (228)
T cd00757 19 LKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYNE 98 (228)
T ss_pred HhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEecc
Confidence 3457899999994 3 46777888899999988543 233444444444433234555554
Q ss_pred cccccc---CCCceeEEEEe
Q 014247 169 RVEDVE---IDEEVDVIISE 185 (428)
Q Consensus 169 d~~~l~---~~~~~DlVvs~ 185 (428)
.+.... +-..+|+|++.
T Consensus 99 ~i~~~~~~~~~~~~DvVi~~ 118 (228)
T cd00757 99 RLDAENAEELIAGYDLVLDC 118 (228)
T ss_pred eeCHHHHHHHHhCCCEEEEc
Confidence 442211 11569999974
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >COG1565 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.41 E-value=3.8 Score=40.20 Aligned_cols=46 Identities=24% Similarity=0.357 Sum_probs=34.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcC---------CCeEEEEeCh-HHHHHHHHHHHH
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAG---------AKRVYAVDAS-DIAVQANEVVKA 156 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g---------~~~V~giD~s-~~~~~a~~~~~~ 156 (428)
.....++++|.|+|.++..+.+.. +.++..||+| +....-++.++.
T Consensus 76 p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~ 131 (370)
T COG1565 76 PAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKA 131 (370)
T ss_pred CCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhc
Confidence 345689999999999987776641 4589999999 777766666554
|
|
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=84.38 E-value=12 Score=34.01 Aligned_cols=71 Identities=18% Similarity=0.311 Sum_probs=44.6
Q ss_pred CCCEEEEEcCCCcH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC-----------C
Q 014247 112 EGKVVVDVGCGTGI---LSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI-----------D 176 (428)
Q Consensus 112 ~~~~VLDiGcGtG~---ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~-----------~ 176 (428)
++++||-.|++.|. ++..+++.|+ +|++++.+ +-...+.+..... .++.++.+|+.+... -
T Consensus 4 ~~~~vlItGa~g~iG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 79 (238)
T PRK05786 4 KGKKVAIIGVSEGLGYAVAYFALKEGA-QVCINSRNENKLKRMKKTLSKY---GNIHYVVGDVSSTESARNVIEKAAKVL 79 (238)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhc---CCeEEEECCCCCHHHHHHHHHHHHHHh
Confidence 56799999987543 3444455677 89999988 5444443333332 247888888875321 1
Q ss_pred CceeEEEEec
Q 014247 177 EEVDVIISEW 186 (428)
Q Consensus 177 ~~~DlVvs~~ 186 (428)
+.+|.++...
T Consensus 80 ~~id~ii~~a 89 (238)
T PRK05786 80 NAIDGLVVTV 89 (238)
T ss_pred CCCCEEEEcC
Confidence 3568887654
|
|
| >PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre | Back alignment and domain information |
|---|
Probab=84.16 E-value=5.1 Score=34.91 Aligned_cols=106 Identities=10% Similarity=0.115 Sum_probs=66.7
Q ss_pred HHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccc---c
Q 014247 98 ETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVED---V 173 (428)
Q Consensus 98 ~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~---l 173 (428)
+.+.+.+.+.. ..+.+|+-|||=+-...+.-......+++..|.+ ..... .++ .|+.-|... +
T Consensus 13 ~~l~~~l~~~~--~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~~~----------~~~-~F~fyD~~~p~~~ 79 (162)
T PF10237_consen 13 EFLARELLDGA--LDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFEQF----------GGD-EFVFYDYNEPEEL 79 (162)
T ss_pred HHHHHHHHHhc--CCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHHhc----------CCc-ceEECCCCChhhh
Confidence 34555555543 4568999999998544443312234489999999 55321 112 344444433 2
Q ss_pred c--CCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCC
Q 014247 174 E--IDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYA 219 (428)
Q Consensus 174 ~--~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 219 (428)
+ +.++||+|++++. +..+.........+.-++++++.++..++
T Consensus 80 ~~~l~~~~d~vv~DPP---Fl~~ec~~k~a~ti~~L~k~~~kii~~Tg 124 (162)
T PF10237_consen 80 PEELKGKFDVVVIDPP---FLSEECLTKTAETIRLLLKPGGKIILCTG 124 (162)
T ss_pred hhhcCCCceEEEECCC---CCCHHHHHHHHHHHHHHhCccceEEEecH
Confidence 1 1379999999884 24555567777888888899998886553
|
This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ). |
| >COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=84.14 E-value=4.5 Score=36.02 Aligned_cols=117 Identities=16% Similarity=0.221 Sum_probs=70.8
Q ss_pred hhhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc----C-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEE
Q 014247 94 RVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA----G-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLH 167 (428)
Q Consensus 94 ~~r~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~----g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~ 167 (428)
....-.|++.|-+ .+...|+++|.-.|..+++.|.. | ..+|.++|++ .-...+... ..+|.|++
T Consensus 55 p~D~~~yQellw~----~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e------~p~i~f~e 124 (237)
T COG3510 55 PSDMWNYQELLWE----LQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE------VPDILFIE 124 (237)
T ss_pred HHHHHHHHHHHHh----cCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc------CCCeEEEe
Confidence 3333455555544 45678999999999877776653 4 2389999999 554332221 24699999
Q ss_pred cccccccC-------CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeee
Q 014247 168 GRVEDVEI-------DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLY 222 (428)
Q Consensus 168 ~d~~~l~~-------~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 222 (428)
++..+... ...+--|+.. +.....++. .-..|+...++|.-|-.+++.+..+.
T Consensus 125 gss~dpai~eqi~~~~~~y~kIfvi-lDsdHs~~h-vLAel~~~~pllsaG~Y~vVeDs~v~ 184 (237)
T COG3510 125 GSSTDPAIAEQIRRLKNEYPKIFVI-LDSDHSMEH-VLAELKLLAPLLSAGDYLVVEDSNVN 184 (237)
T ss_pred CCCCCHHHHHHHHHHhcCCCcEEEE-ecCCchHHH-HHHHHHHhhhHhhcCceEEEeccccc
Confidence 99876432 1222233331 122222222 34456777889999999887766544
|
|
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=84.12 E-value=0.26 Score=42.13 Aligned_cols=42 Identities=26% Similarity=0.305 Sum_probs=32.5
Q ss_pred CceeEEEEecchhhhcch--hhHHHHHHHHhcccccCeEEEccCCee
Q 014247 177 EEVDVIISEWMGYMLLYE--SMLGSVITARDRWLKRGGLILPSYATL 221 (428)
Q Consensus 177 ~~~DlVvs~~~~~~l~~~--~~~~~~l~~~~~~LkpgG~lv~~~~~~ 221 (428)
.+.|+|+++- ++.|. .....+++.++++|||||.|-++.+..
T Consensus 46 ns~d~iyaeH---vlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl 89 (185)
T COG4627 46 NSVDAIYAEH---VLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDL 89 (185)
T ss_pred cchHHHHHHH---HHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCc
Confidence 8999999865 44443 336678999999999999998776544
|
|
| >cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=84.07 E-value=1.8 Score=42.52 Aligned_cols=96 Identities=27% Similarity=0.273 Sum_probs=55.1
Q ss_pred cCCCCCCEEEEEcCC-CcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccc----ccccCCCcee
Q 014247 108 QSFIEGKVVVDVGCG-TGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRV----EDVEIDEEVD 180 (428)
Q Consensus 108 ~~~~~~~~VLDiGcG-tG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~----~~l~~~~~~D 180 (428)
....++.+||-.|+| .|..+..+|+. |+..|++++.+ ...+.+++ .+....+.....+. ..+.....+|
T Consensus 162 ~~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~~~~~~d 237 (351)
T cd08285 162 ANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKE----YGATDIVDYKNGDVVEQILKLTGGKGVD 237 (351)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCceEecCCCCCHHHHHHHHhCCCCCc
Confidence 345678899999876 24555556665 77679999988 55544443 33321111111111 1112224699
Q ss_pred EEEEecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 181 VIISEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 181 lVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
+|+... .. ...+....+.|+++|+++.
T Consensus 238 ~vld~~-----g~----~~~~~~~~~~l~~~G~~v~ 264 (351)
T cd08285 238 AVIIAG-----GG----QDTFEQALKVLKPGGTISN 264 (351)
T ss_pred EEEECC-----CC----HHHHHHHHHHhhcCCEEEE
Confidence 998632 11 2345666778999998874
|
This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=83.76 E-value=2 Score=42.59 Aligned_cols=91 Identities=22% Similarity=0.292 Sum_probs=54.2
Q ss_pred CCCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcc-------cccccCCCc
Q 014247 109 SFIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGR-------VEDVEIDEE 178 (428)
Q Consensus 109 ~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d-------~~~l~~~~~ 178 (428)
...++.+||-.|+|. |.++..+|++ |++.|++++.+ .....+++ .+.. .++..+ +..+. ...
T Consensus 183 ~~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~----~g~~---~~i~~~~~~~~~~v~~~~-~~~ 254 (365)
T cd08278 183 KPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKE----LGAT---HVINPKEEDLVAAIREIT-GGG 254 (365)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCc---EEecCCCcCHHHHHHHHh-CCC
Confidence 446788999998754 5566666665 78789999998 55544433 2321 222211 11122 356
Q ss_pred eeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 179 VDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 179 ~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
+|+|+-.. + . ...+..+.+.|+++|+++.
T Consensus 255 ~d~vld~~-g----~----~~~~~~~~~~l~~~G~~v~ 283 (365)
T cd08278 255 VDYALDTT-G----V----PAVIEQAVDALAPRGTLAL 283 (365)
T ss_pred CcEEEECC-C----C----cHHHHHHHHHhccCCEEEE
Confidence 89998632 1 1 1234566777899998874
|
Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu |
| >KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=83.76 E-value=7.8 Score=37.02 Aligned_cols=73 Identities=18% Similarity=0.338 Sum_probs=56.5
Q ss_pred CCCCCEEEEEcCCCcH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC----------
Q 014247 110 FIEGKVVVDVGCGTGI---LSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI---------- 175 (428)
Q Consensus 110 ~~~~~~VLDiGcGtG~---ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~---------- 175 (428)
...|+.||==|.|.|. +++.+|++|+ ++...|++ .-.....+.+++.| ++....+|+.+.+.
T Consensus 35 ~v~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~Vk~ 110 (300)
T KOG1201|consen 35 SVSGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDREEIYRLAKKVKK 110 (300)
T ss_pred hccCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCHHHHHHHHHHHHH
Confidence 3568899999999985 7888899988 89999999 66666666666664 58888888876421
Q ss_pred C-CceeEEEEec
Q 014247 176 D-EEVDVIISEW 186 (428)
Q Consensus 176 ~-~~~DlVvs~~ 186 (428)
+ +.+|++|.+.
T Consensus 111 e~G~V~ILVNNA 122 (300)
T KOG1201|consen 111 EVGDVDILVNNA 122 (300)
T ss_pred hcCCceEEEecc
Confidence 1 7899999865
|
|
| >COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=83.65 E-value=2 Score=42.07 Aligned_cols=67 Identities=22% Similarity=0.291 Sum_probs=50.1
Q ss_pred CEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC---C-ceeEEEEec
Q 014247 114 KVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID---E-EVDVIISEW 186 (428)
Q Consensus 114 ~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~---~-~~DlVvs~~ 186 (428)
.+++|+=||.|.+.+-+..+|++-+.++|++ ..++.-+.+... ..++..|+.++... . .+|+|+..+
T Consensus 4 ~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~~~~~~~~DvligGp 75 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH------GDIILGDIKELDGEALRKSDVDVLIGGP 75 (328)
T ss_pred ceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC------CceeechHhhcChhhccccCCCEEEeCC
Confidence 5899999999999999999999889999999 554444333221 45677787766543 2 789999855
|
|
| >cd05278 FDH_like Formaldehyde dehydrogenases | Back alignment and domain information |
|---|
Probab=83.39 E-value=2.4 Score=41.31 Aligned_cols=95 Identities=25% Similarity=0.385 Sum_probs=52.9
Q ss_pred CCCCCCEEEEEcCC-CcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccc----ccccCCCceeE
Q 014247 109 SFIEGKVVVDVGCG-TGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRV----EDVEIDEEVDV 181 (428)
Q Consensus 109 ~~~~~~~VLDiGcG-tG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~----~~l~~~~~~Dl 181 (428)
...++.+||..|+| .|..+..+|+. |...|++++.+ ...+.+++ .+....+.....+. ..+...+.+|+
T Consensus 164 ~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~i~~~~~~~~~d~ 239 (347)
T cd05278 164 GIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKE----AGATDIINPKNGDIVEQILELTGGRGVDC 239 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH----hCCcEEEcCCcchHHHHHHHHcCCCCCcE
Confidence 34578899998765 35566666665 65578898777 55444433 23211111111111 11222256999
Q ss_pred EEEecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 182 IISEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 182 Vvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
|+... + . ...+....+.|+++|+++.
T Consensus 240 vld~~-g----~----~~~~~~~~~~l~~~G~~v~ 265 (347)
T cd05278 240 VIEAV-G----F----EETFEQAVKVVRPGGTIAN 265 (347)
T ss_pred EEEcc-C----C----HHHHHHHHHHhhcCCEEEE
Confidence 98632 1 1 1345666778899998874
|
Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall |
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=83.30 E-value=3.4 Score=40.02 Aligned_cols=96 Identities=14% Similarity=0.057 Sum_probs=55.4
Q ss_pred hccCCCCCCEEEEEcC--CCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEc-ccccc---cCCC
Q 014247 106 QNQSFIEGKVVVDVGC--GTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHG-RVEDV---EIDE 177 (428)
Q Consensus 106 ~~~~~~~~~~VLDiGc--GtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~-d~~~l---~~~~ 177 (428)
+.....++.+||-.|+ |.|.++..+|+. |+ +|++++.+ +..+.+++ .|...-+..... +..+. ...+
T Consensus 132 ~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~-~Vi~~~~s~~~~~~~~~----lGa~~vi~~~~~~~~~~~~~~~~~~ 206 (325)
T TIGR02825 132 EICGVKGGETVMVNAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKVAYLKK----LGFDVAFNYKTVKSLEETLKKASPD 206 (325)
T ss_pred HHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----cCCCEEEeccccccHHHHHHHhCCC
Confidence 3345578899999985 456677777776 66 79999888 65554432 343211111110 11110 1124
Q ss_pred ceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 178 EVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 178 ~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
.+|+|+-.. + . ..+....+.|+++|+++.
T Consensus 207 gvdvv~d~~-G----~-----~~~~~~~~~l~~~G~iv~ 235 (325)
T TIGR02825 207 GYDCYFDNV-G----G-----EFSNTVIGQMKKFGRIAI 235 (325)
T ss_pred CeEEEEECC-C----H-----HHHHHHHHHhCcCcEEEE
Confidence 699998532 1 1 123455678999999884
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=83.30 E-value=2.8 Score=41.25 Aligned_cols=75 Identities=28% Similarity=0.317 Sum_probs=47.7
Q ss_pred CCCCEEEEEcCCC-c-HHHHHHHHcCCCeEEEEeChH----------------------HHHHHHHHHHHCCCCCcEEEE
Q 014247 111 IEGKVVVDVGCGT-G-ILSIFCAQAGAKRVYAVDASD----------------------IAVQANEVVKANNLTDKVIVL 166 (428)
Q Consensus 111 ~~~~~VLDiGcGt-G-~ls~~la~~g~~~V~giD~s~----------------------~~~~a~~~~~~~~~~~~v~~~ 166 (428)
...++||-||||. | .++..|+++|.++++.+|.+. -++.|++.+.+.+..-+++.+
T Consensus 22 L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~ 101 (338)
T PRK12475 22 IREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPV 101 (338)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEE
Confidence 4567899999994 3 467778888999999999862 123344455444333345666
Q ss_pred Eccccccc---CCCceeEEEEe
Q 014247 167 HGRVEDVE---IDEEVDVIISE 185 (428)
Q Consensus 167 ~~d~~~l~---~~~~~DlVvs~ 185 (428)
..++..-. .-..+|+|+..
T Consensus 102 ~~~~~~~~~~~~~~~~DlVid~ 123 (338)
T PRK12475 102 VTDVTVEELEELVKEVDLIIDA 123 (338)
T ss_pred eccCCHHHHHHHhcCCCEEEEc
Confidence 55543211 12679999974
|
|
| >cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=83.23 E-value=7.4 Score=38.45 Aligned_cols=96 Identities=24% Similarity=0.269 Sum_probs=53.3
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcc------cccccCCCc
Q 014247 108 QSFIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGR------VEDVEIDEE 178 (428)
Q Consensus 108 ~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d------~~~l~~~~~ 178 (428)
....++.+||-.|+|. |.++..+|+. |+.+|++++.+ .-.+.+++ .+...-+.....+ +.++.. ..
T Consensus 180 ~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~~~~~~~~~-~g 254 (365)
T cd08277 180 AKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKE----FGATDFINPKDSDKPVSEVIREMTG-GG 254 (365)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCCcEeccccccchHHHHHHHHhC-CC
Confidence 3457889999998753 4444555555 77689999988 66555533 2332111111100 111111 46
Q ss_pred eeEEEEecchhhhcchhhHHHHHHHHhcccccC-eEEEcc
Q 014247 179 VDVIISEWMGYMLLYESMLGSVITARDRWLKRG-GLILPS 217 (428)
Q Consensus 179 ~DlVvs~~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~lv~~ 217 (428)
+|+|+-.. + . ...+....+.|+++ |+++..
T Consensus 255 ~d~vid~~-g----~----~~~~~~~~~~l~~~~G~~v~~ 285 (365)
T cd08277 255 VDYSFECT-G----N----ADLMNEALESTKLGWGVSVVV 285 (365)
T ss_pred CCEEEECC-C----C----hHHHHHHHHhcccCCCEEEEE
Confidence 89998532 1 1 12445556678875 887643
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i |
| >KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=82.88 E-value=2.9 Score=40.12 Aligned_cols=47 Identities=32% Similarity=0.422 Sum_probs=35.5
Q ss_pred ccCCCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHH
Q 014247 107 NQSFIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEV 153 (428)
Q Consensus 107 ~~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~ 153 (428)
.....+|.+|.-+|+|. |+...+-|++ |+.+++|||++ +-.+.|++.
T Consensus 187 ~Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~f 236 (375)
T KOG0022|consen 187 TAKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEF 236 (375)
T ss_pred hcccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhc
Confidence 34567899999999997 4444555554 99999999999 777776553
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=82.41 E-value=12 Score=37.26 Aligned_cols=93 Identities=15% Similarity=0.128 Sum_probs=62.6
Q ss_pred EEEEEcCCCcHHHHHHHHcCCCeEEEEeChHHHHHHHHHHHHCCCCCc-EEEEEcccccccCCCceeEEEEecchhhhcc
Q 014247 115 VVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQANEVVKANNLTDK-VIVLHGRVEDVEIDEEVDVIISEWMGYMLLY 193 (428)
Q Consensus 115 ~VLDiGcGtG~ls~~la~~g~~~V~giD~s~~~~~a~~~~~~~~~~~~-v~~~~~d~~~l~~~~~~DlVvs~~~~~~l~~ 193 (428)
.||-++-.-|.++..++..+... ..|.--.-...+++++.|++... ++++.. .+ ++++.+|+|+.-+ --.
T Consensus 47 ~~~i~nd~fGal~~~l~~~~~~~--~~ds~~~~~~~~~n~~~n~~~~~~~~~~~~--~~-~~~~~~d~vl~~~----PK~ 117 (378)
T PRK15001 47 PVLILNDAFGALSCALAEHKPYS--IGDSYISELATRENLRLNGIDESSVKFLDS--TA-DYPQQPGVVLIKV----PKT 117 (378)
T ss_pred CEEEEcCchhHHHHHHHhCCCCe--eehHHHHHHHHHHHHHHcCCCcccceeecc--cc-cccCCCCEEEEEe----CCC
Confidence 79999999999999999754421 13332223335678888887543 555532 21 3346799999743 122
Q ss_pred hhhHHHHHHHHhcccccCeEEEc
Q 014247 194 ESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 194 ~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
...++..+..+...|.||+.++.
T Consensus 118 ~~~l~~~l~~l~~~l~~~~~ii~ 140 (378)
T PRK15001 118 LALLEQQLRALRKVVTSDTRIIA 140 (378)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEE
Confidence 34577888999999999999774
|
|
| >TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent | Back alignment and domain information |
|---|
Probab=82.40 E-value=2.6 Score=42.34 Aligned_cols=100 Identities=23% Similarity=0.184 Sum_probs=56.1
Q ss_pred CCCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEc---cc----ccccCCCc
Q 014247 109 SFIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHG---RV----EDVEIDEE 178 (428)
Q Consensus 109 ~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~---d~----~~l~~~~~ 178 (428)
...++.+||-.|+|. |.++..+|+. |++.|+++|.+ .-.+.|++ .|.. .+... +. .++.....
T Consensus 182 ~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~----~Ga~---~v~~~~~~~~~~~v~~~~~~~g 254 (393)
T TIGR02819 182 GVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARS----FGCE---TVDLSKDATLPEQIEQILGEPE 254 (393)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH----cCCe---EEecCCcccHHHHHHHHcCCCC
Confidence 456788888888763 4555556664 88677777887 55555544 2331 12211 11 11122246
Q ss_pred eeEEEEecchhhh-----c-chhhHHHHHHHHhcccccCeEEEc
Q 014247 179 VDVIISEWMGYML-----L-YESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 179 ~DlVvs~~~~~~l-----~-~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
+|+|+-.. +.-- . ........++...+++++||++++
T Consensus 255 ~Dvvid~~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~ 297 (393)
T TIGR02819 255 VDCAVDCV-GFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGI 297 (393)
T ss_pred CcEEEECC-CCccccccccccccchHHHHHHHHHHhhCCCEEEE
Confidence 89998632 2100 0 001123466777789999998875
|
Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent. |
| >cd08300 alcohol_DH_class_III class III alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=82.32 E-value=9.6 Score=37.69 Aligned_cols=95 Identities=26% Similarity=0.278 Sum_probs=53.6
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEc--ccc----cccCCCc
Q 014247 108 QSFIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHG--RVE----DVEIDEE 178 (428)
Q Consensus 108 ~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~--d~~----~l~~~~~ 178 (428)
....++.+||-.|+|. |.++..+|+. |+++|+++|.+ +..+.+++ .|...-+..... +.. ++. .+.
T Consensus 182 ~~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~~~~v~~~~-~~g 256 (368)
T cd08300 182 AKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKK----FGATDCVNPKDHDKPIQQVLVEMT-DGG 256 (368)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCCEEEcccccchHHHHHHHHHh-CCC
Confidence 3456789999998753 4455555665 77679999998 66655543 233211111111 111 111 136
Q ss_pred eeEEEEecchhhhcchhhHHHHHHHHhcccccC-eEEEc
Q 014247 179 VDVIISEWMGYMLLYESMLGSVITARDRWLKRG-GLILP 216 (428)
Q Consensus 179 ~DlVvs~~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~lv~ 216 (428)
+|+|+-.. + . ...+....+.|+++ |+++.
T Consensus 257 ~d~vid~~-g----~----~~~~~~a~~~l~~~~G~~v~ 286 (368)
T cd08300 257 VDYTFECI-G----N----VKVMRAALEACHKGWGTSVI 286 (368)
T ss_pred CcEEEECC-C----C----hHHHHHHHHhhccCCCeEEE
Confidence 89998632 1 1 12445556678887 87774
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim |
| >cd05285 sorbitol_DH Sorbitol dehydrogenase | Back alignment and domain information |
|---|
Probab=82.30 E-value=3.9 Score=39.92 Aligned_cols=97 Identities=26% Similarity=0.293 Sum_probs=55.2
Q ss_pred ccCCCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcc-------cccccCC
Q 014247 107 NQSFIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGR-------VEDVEID 176 (428)
Q Consensus 107 ~~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d-------~~~l~~~ 176 (428)
.....++.+||-.|+|. |..+..+|+. |++.|++++.+ +....+++. +....+.....+ +.+....
T Consensus 157 ~~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~----g~~~vi~~~~~~~~~~~~~~~~~~~~ 232 (343)
T cd05285 157 RAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKEL----GATHTVNVRTEDTPESAEKIAELLGG 232 (343)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----CCcEEeccccccchhHHHHHHHHhCC
Confidence 34557888999888764 5556666665 77558899887 665555332 221111111111 1122222
Q ss_pred CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 177 EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 177 ~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
..+|+|+... + . ...+....+.|+++|+++.
T Consensus 233 ~~~d~vld~~-g----~----~~~~~~~~~~l~~~G~~v~ 263 (343)
T cd05285 233 KGPDVVIECT-G----A----ESCIQTAIYATRPGGTVVL 263 (343)
T ss_pred CCCCEEEECC-C----C----HHHHHHHHHHhhcCCEEEE
Confidence 5699999632 1 1 1245566778999998874
|
Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >COG1255 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=82.23 E-value=11 Score=30.59 Aligned_cols=84 Identities=23% Similarity=0.154 Sum_probs=54.5
Q ss_pred CEEEEEcCCCc-HHHHHHHHcCCCeEEEEeChHHHHHHHHHHHHCCCCCcEEEEEcccccccCC--CceeEEEEecchhh
Q 014247 114 KVVVDVGCGTG-ILSIFCAQAGAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDVEID--EEVDVIISEWMGYM 190 (428)
Q Consensus 114 ~~VLDiGcGtG-~ls~~la~~g~~~V~giD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~--~~~DlVvs~~~~~~ 190 (428)
.+|.+||-|-= ..+..++++|+ .|+++|+++- .+ - ..+.++..|+++-... ...|+|.|-
T Consensus 15 gkVvEVGiG~~~~VA~~L~e~g~-dv~atDI~~~------~a----~-~g~~~v~DDitnP~~~iY~~A~lIYSi----- 77 (129)
T COG1255 15 GKVVEVGIGFFLDVAKRLAERGF-DVLATDINEK------TA----P-EGLRFVVDDITNPNISIYEGADLIYSI----- 77 (129)
T ss_pred CcEEEEccchHHHHHHHHHHcCC-cEEEEecccc------cC----c-ccceEEEccCCCccHHHhhCccceeec-----
Confidence 38999998864 35677888887 7999999932 11 1 2488999999875543 778999982
Q ss_pred hcchhhHHHHHHHHhcccccCeEEE
Q 014247 191 LLYESMLGSVITARDRWLKRGGLIL 215 (428)
Q Consensus 191 l~~~~~~~~~l~~~~~~LkpgG~lv 215 (428)
-....+...+-.+.+.++-.-.+.
T Consensus 78 -RpppEl~~~ildva~aVga~l~I~ 101 (129)
T COG1255 78 -RPPPELQSAILDVAKAVGAPLYIK 101 (129)
T ss_pred -CCCHHHHHHHHHHHHhhCCCEEEE
Confidence 223334444444555444444443
|
|
| >cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases | Back alignment and domain information |
|---|
Probab=82.19 E-value=3.6 Score=40.08 Aligned_cols=93 Identities=26% Similarity=0.328 Sum_probs=53.5
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcc------cccccCCCc
Q 014247 108 QSFIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGR------VEDVEIDEE 178 (428)
Q Consensus 108 ~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d------~~~l~~~~~ 178 (428)
....++.+||-.|+|. |..+..+|+. |.+.|++++.+ ...+.++ ..+.. .++..+ +........
T Consensus 155 ~~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~----~~g~~---~~~~~~~~~~~~~~~~~~~~~ 227 (343)
T cd08236 155 AGITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVAR----ELGAD---DTINPKEEDVEKVRELTEGRG 227 (343)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH----HcCCC---EEecCccccHHHHHHHhCCCC
Confidence 3456788999998754 5555556665 66559999887 5554442 22321 222111 111222245
Q ss_pred eeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 179 VDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 179 ~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
+|+|+... . ....+..+.+.|+++|+++.
T Consensus 228 ~d~vld~~-----g----~~~~~~~~~~~l~~~G~~v~ 256 (343)
T cd08236 228 ADLVIEAA-----G----SPATIEQALALARPGGKVVL 256 (343)
T ss_pred CCEEEECC-----C----CHHHHHHHHHHhhcCCEEEE
Confidence 99998632 1 12344566778899998874
|
This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast |
| >PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein | Back alignment and domain information |
|---|
Probab=82.18 E-value=4.1 Score=37.98 Aligned_cols=108 Identities=15% Similarity=0.077 Sum_probs=52.7
Q ss_pred HHHHHHHHHh-ccCCCCCCEEEEEcCCCcH----HHHHHHHc---CCCeEEEEeChHHHHHHHHHHHHCCCCCcEEEEEc
Q 014247 97 TETYRAAIMQ-NQSFIEGKVVVDVGCGTGI----LSIFCAQA---GAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHG 168 (428)
Q Consensus 97 ~~~~~~~i~~-~~~~~~~~~VLDiGcGtG~----ls~~la~~---g~~~V~giD~s~~~~~a~~~~~~~~~~~~v~~~~~ 168 (428)
+.++.+.|.. .+.....++||-+|+|+-- -+..+.+. ++ -++-.|+.+.+.. --..+.+
T Consensus 45 YtQLCqYln~~tlaVP~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~a-ilvDnDi~d~vSD------------a~~~~~~ 111 (299)
T PF06460_consen 45 YTQLCQYLNKTTLAVPHNMRVLHLGAGSDKGVAPGTAVLRQWLPEDA-ILVDNDIRDYVSD------------ADQSIVG 111 (299)
T ss_dssp HHHHHHHHTTS-----TT-EEEEES---TTSB-HHHHHHHHHS-TT--EEEEEESS--B-S------------SSEEEES
T ss_pred HHHHHHHhccccEeeccCcEEEEecccccCCcCCchHHHHHhCCCCc-EEEecchhhhccc------------cCCceec
Confidence 3344444433 2334567899999998621 22333332 23 5556666544321 2345668
Q ss_pred ccccccCCCceeEEEEecch--------hhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 169 RVEDVEIDEEVDVIISEWMG--------YMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 169 d~~~l~~~~~~DlVvs~~~~--------~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
|...+..+.++|+|+|..-+ .....+.-...+..-+...|+-||.+++.
T Consensus 112 Dc~t~~~~~k~DlIiSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiK 168 (299)
T PF06460_consen 112 DCRTYMPPDKFDLIISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIK 168 (299)
T ss_dssp -GGGEEESS-EEEEEE----TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEE
T ss_pred cccccCCCCcccEEEEecccccccccccccCCccccHHHHHHHHHhhhhcCceEEEE
Confidence 98888888999999997621 01112333555566667889999988753
|
This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A. |
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=81.48 E-value=13 Score=31.57 Aligned_cols=81 Identities=21% Similarity=0.261 Sum_probs=43.8
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCC--cHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC
Q 014247 100 YRAAIMQNQSFIEGKVVVDVGCGT--GILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID 176 (428)
Q Consensus 100 ~~~~i~~~~~~~~~~~VLDiGcGt--G~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~ 176 (428)
+..++.+.....++++|+-+|||. ..++..+++.|...|+.+|.+ +..+...+...... +.....+..+. .
T Consensus 6 ~~~a~~~~~~~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~~--~ 79 (155)
T cd01065 6 FVRALEEAGIELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELG----IAIAYLDLEEL--L 79 (155)
T ss_pred HHHHHHhhCCCCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcc----cceeecchhhc--c
Confidence 444555443235678999999973 123333444455589999998 55444333322110 11122233322 2
Q ss_pred CceeEEEEec
Q 014247 177 EEVDVIISEW 186 (428)
Q Consensus 177 ~~~DlVvs~~ 186 (428)
+.+|+|++..
T Consensus 80 ~~~Dvvi~~~ 89 (155)
T cd01065 80 AEADLIINTT 89 (155)
T ss_pred ccCCEEEeCc
Confidence 6789999864
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=81.27 E-value=3.4 Score=40.42 Aligned_cols=97 Identities=23% Similarity=0.218 Sum_probs=56.3
Q ss_pred hccCCCCCCEEEEEcCCC--cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccc----ccCCC
Q 014247 106 QNQSFIEGKVVVDVGCGT--GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVED----VEIDE 177 (428)
Q Consensus 106 ~~~~~~~~~~VLDiGcGt--G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~----l~~~~ 177 (428)
......++.+||-.|+.. |.++..+|++ |+ .++++-.+ +-.+.+++ .|-...+.+...|+.+ +....
T Consensus 136 ~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~~----lGAd~vi~y~~~~~~~~v~~~t~g~ 210 (326)
T COG0604 136 DRAGLKPGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKE----LGADHVINYREEDFVEQVRELTGGK 210 (326)
T ss_pred HhcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHh----cCCCEEEcCCcccHHHHHHHHcCCC
Confidence 344557799999998554 5677778886 66 56665555 44444333 3333233333443322 22224
Q ss_pred ceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 178 EVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 178 ~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
.+|+|+... -...+......|+++|+++..
T Consensus 211 gvDvv~D~v----------G~~~~~~~l~~l~~~G~lv~i 240 (326)
T COG0604 211 GVDVVLDTV----------GGDTFAASLAALAPGGRLVSI 240 (326)
T ss_pred CceEEEECC----------CHHHHHHHHHHhccCCEEEEE
Confidence 799999743 112233455678999988753
|
|
| >KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=81.25 E-value=4.2 Score=36.95 Aligned_cols=72 Identities=18% Similarity=0.252 Sum_probs=53.4
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccc
Q 014247 100 YRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDV 173 (428)
Q Consensus 100 ~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l 173 (428)
+.+.|.+..+.....-|.+||.|.|..+..+..+|+.+...+|++ .++.-.+...+.. ..+..+.++|+...
T Consensus 38 lT~KIvK~A~~~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa--~~~~~IHh~D~LR~ 110 (326)
T KOG0821|consen 38 LTDKIVKKAGNLTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAA--PGKLRIHHGDVLRF 110 (326)
T ss_pred HHHHHHHhccccccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcC--CcceEEecccccee
Confidence 344556666667778999999999999999999998899999998 7766655444432 23577778886543
|
|
| >COG2933 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.12 E-value=5 Score=37.54 Aligned_cols=87 Identities=22% Similarity=0.292 Sum_probs=63.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeChHHHHHHHHHHHHCCCCCcEEEEEcccccccC-CCceeEEEEecch
Q 014247 110 FIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDVEI-DEEVDVIISEWMG 188 (428)
Q Consensus 110 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~-~~~~DlVvs~~~~ 188 (428)
..+++...|+|+-.|.++..+.+++- .|++||-..|+.-. -.. ..|+-...|-..+.+ ..+.|-.||..
T Consensus 209 L~~~M~avDLGAcPGGWTyqLVkr~m-~V~aVDng~ma~sL----~dt---g~v~h~r~DGfk~~P~r~~idWmVCDm-- 278 (358)
T COG2933 209 LAPGMWAVDLGACPGGWTYQLVKRNM-RVYAVDNGPMAQSL----MDT---GQVTHLREDGFKFRPTRSNIDWMVCDM-- 278 (358)
T ss_pred hcCCceeeecccCCCccchhhhhcce-EEEEeccchhhhhh----hcc---cceeeeeccCcccccCCCCCceEEeeh--
Confidence 36789999999999999999999877 89999988775432 222 347888888777665 58899999975
Q ss_pred hhhcchhhHHHHHHHHhcccccC
Q 014247 189 YMLLYESMLGSVITARDRWLKRG 211 (428)
Q Consensus 189 ~~l~~~~~~~~~l~~~~~~Lkpg 211 (428)
.. .+..+-..+..+|..|
T Consensus 279 --VE---kP~rv~~li~~Wl~nG 296 (358)
T COG2933 279 --VE---KPARVAALIAKWLVNG 296 (358)
T ss_pred --hc---CcHHHHHHHHHHHHcc
Confidence 22 2444444555566554
|
|
| >cd08293 PTGR2 Prostaglandin reductase | Back alignment and domain information |
|---|
Probab=81.06 E-value=6 Score=38.51 Aligned_cols=93 Identities=17% Similarity=0.178 Sum_probs=53.3
Q ss_pred CCCC--CEEEEEcC--CCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccc----ccccCCCce
Q 014247 110 FIEG--KVVVDVGC--GTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRV----EDVEIDEEV 179 (428)
Q Consensus 110 ~~~~--~~VLDiGc--GtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~----~~l~~~~~~ 179 (428)
..++ .+||-.|+ |.|..+..+|++ |+.+|++++.+ +..+.+++. .|....+.....++ .++. +..+
T Consensus 150 ~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~---lGa~~vi~~~~~~~~~~i~~~~-~~gv 225 (345)
T cd08293 150 ITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSE---LGFDAAINYKTDNVAERLRELC-PEGV 225 (345)
T ss_pred CCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh---cCCcEEEECCCCCHHHHHHHHC-CCCc
Confidence 3444 89999986 456677777776 76579999888 655544432 23321111111111 1111 2469
Q ss_pred eEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 180 DVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 180 DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
|+|+... + . . .+....+.|+++|+++.
T Consensus 226 d~vid~~-g----~-~----~~~~~~~~l~~~G~iv~ 252 (345)
T cd08293 226 DVYFDNV-G----G-E----ISDTVISQMNENSHIIL 252 (345)
T ss_pred eEEEECC-C----c-H----HHHHHHHHhccCCEEEE
Confidence 9998632 1 1 1 13455678999999884
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid |
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=81.03 E-value=1.8 Score=40.03 Aligned_cols=54 Identities=22% Similarity=0.245 Sum_probs=36.2
Q ss_pred EEEEEcccccc--cC-CCceeEEEEecchhhh-c-----------chhhHHHHHHHHhcccccCeEEEc
Q 014247 163 VIVLHGRVEDV--EI-DEEVDVIISEWMGYML-L-----------YESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 163 v~~~~~d~~~l--~~-~~~~DlVvs~~~~~~l-~-----------~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
++++++|..++ .+ ++++|+|+..+.-... . ...-...++.++.|+|||||.+++
T Consensus 2 ~~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 2 SRFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS 70 (227)
T ss_pred CeEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 36778887664 33 3899999998632110 0 012246788999999999998874
|
|
| >cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity | Back alignment and domain information |
|---|
Probab=81.00 E-value=3 Score=40.19 Aligned_cols=95 Identities=17% Similarity=0.114 Sum_probs=55.2
Q ss_pred hccCCCCCCEEEEEcC--CCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccc----cccCCC
Q 014247 106 QNQSFIEGKVVVDVGC--GTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVE----DVEIDE 177 (428)
Q Consensus 106 ~~~~~~~~~~VLDiGc--GtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~----~l~~~~ 177 (428)
......+|.+||-.|+ |.|.++..+|+. |+ +|++++.+ +..+.+++ .|...-+.....+.. .+. ..
T Consensus 137 ~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~-~vi~~~~s~~~~~~l~~----~Ga~~vi~~~~~~~~~~v~~~~-~~ 210 (329)
T cd08294 137 EICKPKAGETVVVNGAAGAVGSLVGQIAKIKGC-KVIGCAGSDDKVAWLKE----LGFDAVFNYKTVSLEEALKEAA-PD 210 (329)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----cCCCEEEeCCCccHHHHHHHHC-CC
Confidence 3344578899999885 456666667776 66 79999887 65555443 343211111111111 111 24
Q ss_pred ceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 178 EVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 178 ~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
.+|+|+... + . ..+....+.|+++|+++.
T Consensus 211 gvd~vld~~-g----~-----~~~~~~~~~l~~~G~iv~ 239 (329)
T cd08294 211 GIDCYFDNV-G----G-----EFSSTVLSHMNDFGRVAV 239 (329)
T ss_pred CcEEEEECC-C----H-----HHHHHHHHhhccCCEEEE
Confidence 689998532 1 1 234566778999999874
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac |
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=81.00 E-value=6.4 Score=38.70 Aligned_cols=75 Identities=28% Similarity=0.321 Sum_probs=46.3
Q ss_pred CCCCEEEEEcCCC-c-HHHHHHHHcCCCeEEEEeChH----------------------HHHHHHHHHHHCCCCCcEEEE
Q 014247 111 IEGKVVVDVGCGT-G-ILSIFCAQAGAKRVYAVDASD----------------------IAVQANEVVKANNLTDKVIVL 166 (428)
Q Consensus 111 ~~~~~VLDiGcGt-G-~ls~~la~~g~~~V~giD~s~----------------------~~~~a~~~~~~~~~~~~v~~~ 166 (428)
....+||-+|||. | .++..|++.|..+++.+|.+. -++.+++.+++.+-.-+++.+
T Consensus 22 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~~ 101 (339)
T PRK07688 22 LREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEAI 101 (339)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEEE
Confidence 3557899999994 3 467778888999999999751 223334444433322235555
Q ss_pred Ecccccc---cCCCceeEEEEe
Q 014247 167 HGRVEDV---EIDEEVDVIISE 185 (428)
Q Consensus 167 ~~d~~~l---~~~~~~DlVvs~ 185 (428)
..++..- .+-..+|+|+..
T Consensus 102 ~~~~~~~~~~~~~~~~DlVid~ 123 (339)
T PRK07688 102 VQDVTAEELEELVTGVDLIIDA 123 (339)
T ss_pred eccCCHHHHHHHHcCCCEEEEc
Confidence 5554321 112679999984
|
|
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=80.98 E-value=12 Score=37.84 Aligned_cols=93 Identities=26% Similarity=0.336 Sum_probs=53.1
Q ss_pred HHHHhccC-CCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeChH-HHHHHHHHHHHCCCCCcEEEEEcccccccCCC
Q 014247 102 AAIMQNQS-FIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDASD-IAVQANEVVKANNLTDKVIVLHGRVEDVEIDE 177 (428)
Q Consensus 102 ~~i~~~~~-~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s~-~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~ 177 (428)
+.+.+... ...|++|+-+|+|. |......++. |+ +|+++|.++ -...|. ..|. .+. ++.+.- .
T Consensus 183 ~~i~r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga-~ViV~d~dp~r~~~A~----~~G~----~v~--~leeal--~ 249 (406)
T TIGR00936 183 DGILRATNLLIAGKTVVVAGYGWCGKGIAMRARGMGA-RVIVTEVDPIRALEAA----MDGF----RVM--TMEEAA--K 249 (406)
T ss_pred HHHHHhcCCCCCcCEEEEECCCHHHHHHHHHHhhCcC-EEEEEeCChhhHHHHH----hcCC----EeC--CHHHHH--h
Confidence 44444432 36799999999997 4444444443 66 799999883 322222 2232 222 222221 4
Q ss_pred ceeEEEEecchhhhcchhhHHHHH-HHHhcccccCeEEEc
Q 014247 178 EVDVIISEWMGYMLLYESMLGSVI-TARDRWLKRGGLILP 216 (428)
Q Consensus 178 ~~DlVvs~~~~~~l~~~~~~~~~l-~~~~~~LkpgG~lv~ 216 (428)
..|+|++.. . -..++ .+....+|+|++++.
T Consensus 250 ~aDVVItaT-----G----~~~vI~~~~~~~mK~GailiN 280 (406)
T TIGR00936 250 IGDIFITAT-----G----NKDVIRGEHFENMKDGAIVAN 280 (406)
T ss_pred cCCEEEECC-----C----CHHHHHHHHHhcCCCCcEEEE
Confidence 679988732 1 12233 336678999998874
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=80.97 E-value=6.2 Score=38.13 Aligned_cols=93 Identities=15% Similarity=0.126 Sum_probs=55.7
Q ss_pred CEEEEEcCCC--cHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCC----CcEEEEEcccccccCCCceeEEEEec
Q 014247 114 KVVVDVGCGT--GILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLT----DKVIVLHGRVEDVEIDEEVDVIISEW 186 (428)
Q Consensus 114 ~~VLDiGcGt--G~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~----~~v~~~~~d~~~l~~~~~~DlVvs~~ 186 (428)
++|+-+|+|. |.++..|++.|. .|+.++-+ +.++..++ .+|+. .....+......-...+.+|+|+...
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~~~~~~~i~~---~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~v 78 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGL-PVRLILRDRQRLAAYQQ---AGGLTLVEQGQASLYAIPAETADAAEPIHRLLLAC 78 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCC-CeEEEEechHHHHHHhh---cCCeEEeeCCcceeeccCCCCcccccccCEEEEEC
Confidence 4799999995 567888888876 79999987 55443322 12221 00011110000001125799988632
Q ss_pred chhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 187 MGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 187 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
...+...+++.+...+.++..+++
T Consensus 79 ------K~~~~~~al~~l~~~l~~~t~vv~ 102 (305)
T PRK05708 79 ------KAYDAEPAVASLAHRLAPGAELLL 102 (305)
T ss_pred ------CHHhHHHHHHHHHhhCCCCCEEEE
Confidence 223477788888899999887664
|
|
| >cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=80.89 E-value=2.6 Score=40.98 Aligned_cols=95 Identities=26% Similarity=0.309 Sum_probs=54.3
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcc----cccccCCCcee
Q 014247 108 QSFIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGR----VEDVEIDEEVD 180 (428)
Q Consensus 108 ~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d----~~~l~~~~~~D 180 (428)
....++.+||..|+|. |..+..+|+. |. +|+++..+ +....+++ .+....+.....+ +..+.....+|
T Consensus 155 ~~l~~g~~vLI~g~g~vG~~a~~lA~~~g~-~v~~~~~s~~~~~~~~~----~g~~~v~~~~~~~~~~~l~~~~~~~~vd 229 (337)
T cd08261 155 AGVTAGDTVLVVGAGPIGLGVIQVAKARGA-RVIVVDIDDERLEFARE----LGADDTINVGDEDVAARLRELTDGEGAD 229 (337)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEECCCHHHHHHHHH----hCCCEEecCcccCHHHHHHHHhCCCCCC
Confidence 3456788999998763 5566666665 66 78888777 66555533 2221111111111 11111224699
Q ss_pred EEEEecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 181 VIISEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 181 lVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
+|+... .. ...+..+.+.|+++|.++.
T Consensus 230 ~vld~~-----g~----~~~~~~~~~~l~~~G~~i~ 256 (337)
T cd08261 230 VVIDAT-----GN----PASMEEAVELVAHGGRVVL 256 (337)
T ss_pred EEEECC-----CC----HHHHHHHHHHHhcCCEEEE
Confidence 999632 11 2235566778899998873
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, |
| >PRK10458 DNA cytosine methylase; Provisional | Back alignment and domain information |
|---|
Probab=80.60 E-value=8.4 Score=39.58 Aligned_cols=59 Identities=10% Similarity=0.081 Sum_probs=41.0
Q ss_pred CCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc
Q 014247 113 GKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE 174 (428)
Q Consensus 113 ~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~ 174 (428)
..+++|+=||.|.+++-+-.+|..-|.++|++ ..++.-+.+... .....++.+|+.++.
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~---~p~~~~~~~DI~~i~ 147 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYC---DPATHRFNEDIRDIT 147 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCC---CCccceeccChhhCc
Confidence 45999999999999999988898888899999 544443333210 112345566776654
|
|
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=80.47 E-value=11 Score=38.03 Aligned_cols=94 Identities=22% Similarity=0.287 Sum_probs=52.9
Q ss_pred HhccCCCCCCEEEEEcCC-CcHH-HHHHHHcCCCeEEEEeChHHHHHHHHHHHHCCCCCcEEEEEcccccccC-CCceeE
Q 014247 105 MQNQSFIEGKVVVDVGCG-TGIL-SIFCAQAGAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDVEI-DEEVDV 181 (428)
Q Consensus 105 ~~~~~~~~~~~VLDiGcG-tG~l-s~~la~~g~~~V~giD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~-~~~~Dl 181 (428)
.+.+....+++||=||.| .|.+ +.++++.|..+|+.+--+ .+.|.+.+.+.+ ..++ .+.++.. -..+|+
T Consensus 170 ~~~~~~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT--~erA~~La~~~~----~~~~--~l~el~~~l~~~Dv 241 (414)
T COG0373 170 KRIFGSLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRT--LERAEELAKKLG----AEAV--ALEELLEALAEADV 241 (414)
T ss_pred HHHhcccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCC--HHHHHHHHHHhC----Ceee--cHHHHHHhhhhCCE
Confidence 333444678999999999 6654 566677788888887766 333444444433 1222 2233222 167999
Q ss_pred EEEec-chhhhcchhhHHHHHHHHhc
Q 014247 182 IISEW-MGYMLLYESMLGSVITARDR 206 (428)
Q Consensus 182 Vvs~~-~~~~l~~~~~~~~~l~~~~~ 206 (428)
|||.. -.+......+.+..+....+
T Consensus 242 VissTsa~~~ii~~~~ve~a~~~r~~ 267 (414)
T COG0373 242 VISSTSAPHPIITREMVERALKIRKR 267 (414)
T ss_pred EEEecCCCccccCHHHHHHHHhcccC
Confidence 99964 11223333445555554433
|
|
| >cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH) | Back alignment and domain information |
|---|
Probab=80.35 E-value=10 Score=37.19 Aligned_cols=93 Identities=26% Similarity=0.337 Sum_probs=51.0
Q ss_pred CCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcc-------cccccCCCcee
Q 014247 111 IEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGR-------VEDVEIDEEVD 180 (428)
Q Consensus 111 ~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d-------~~~l~~~~~~D 180 (428)
.++.+||-.|+|. |..+..+|+. |+++|++++.+ +....++ ..+....+.....+ +.++.....+|
T Consensus 176 ~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~----~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~~d 251 (361)
T cd08231 176 GAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAR----EFGADATIDIDELPDPQRRAIVRDITGGRGAD 251 (361)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH----HcCCCeEEcCcccccHHHHHHHHHHhCCCCCc
Confidence 4788899888642 3344445554 77689999887 5444432 23332111111111 11112225699
Q ss_pred EEEEecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 181 VIISEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 181 lVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
+|+... + . ...+....+.|+++|+++.
T Consensus 252 ~vid~~-g----~----~~~~~~~~~~l~~~G~~v~ 278 (361)
T cd08231 252 VVIEAS-G----H----PAAVPEGLELLRRGGTYVL 278 (361)
T ss_pred EEEECC-C----C----hHHHHHHHHHhccCCEEEE
Confidence 998632 1 1 1234555678999998874
|
This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino |
| >cd08234 threonine_DH_like L-threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=80.16 E-value=11 Score=36.24 Aligned_cols=94 Identities=23% Similarity=0.296 Sum_probs=55.1
Q ss_pred ccCCCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccc-----ccCCCc
Q 014247 107 NQSFIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVED-----VEIDEE 178 (428)
Q Consensus 107 ~~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~-----l~~~~~ 178 (428)
.....++.+||.+|+|. |..+..+|+. |++.|++++.+ +....+++ .+.. .++..+-.+ ......
T Consensus 154 ~~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~~~ 226 (334)
T cd08234 154 LLGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKK----LGAT---ETVDPSREDPEAQKEDNPYG 226 (334)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCCe---EEecCCCCCHHHHHHhcCCC
Confidence 34556788999998652 4455555665 66558899888 66655533 2321 222222111 112357
Q ss_pred eeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 179 VDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 179 ~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
+|+|+... + ....+....+.|+++|+++.
T Consensus 227 vd~v~~~~-~--------~~~~~~~~~~~l~~~G~~v~ 255 (334)
T cd08234 227 FDVVIEAT-G--------VPKTLEQAIEYARRGGTVLV 255 (334)
T ss_pred CcEEEECC-C--------ChHHHHHHHHHHhcCCEEEE
Confidence 99999632 1 12345566778899998874
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=80.16 E-value=12 Score=38.09 Aligned_cols=84 Identities=30% Similarity=0.351 Sum_probs=49.0
Q ss_pred CCCCEEEEEcCCC-cHHHHHHH-HcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEEecc
Q 014247 111 IEGKVVVDVGCGT-GILSIFCA-QAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWM 187 (428)
Q Consensus 111 ~~~~~VLDiGcGt-G~ls~~la-~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~~~ 187 (428)
..|++|+-+|+|. |......+ ..|+ +|+.+|.+ .....+.. .|. .+. ++.+.. ..+|+|+...
T Consensus 210 l~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp~ra~~A~~----~G~----~v~--~l~eal--~~aDVVI~aT- 275 (425)
T PRK05476 210 IAGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDPICALQAAM----DGF----RVM--TMEEAA--ELGDIFVTAT- 275 (425)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCchhhHHHHh----cCC----Eec--CHHHHH--hCCCEEEECC-
Confidence 5799999999986 33333333 3477 89999998 43322211 122 222 233321 4689998732
Q ss_pred hhhhcchhhHHHHHH-HHhcccccCeEEEc
Q 014247 188 GYMLLYESMLGSVIT-ARDRWLKRGGLILP 216 (428)
Q Consensus 188 ~~~l~~~~~~~~~l~-~~~~~LkpgG~lv~ 216 (428)
. ...++. .....+|+|++++.
T Consensus 276 -------G-~~~vI~~~~~~~mK~GailiN 297 (425)
T PRK05476 276 -------G-NKDVITAEHMEAMKDGAILAN 297 (425)
T ss_pred -------C-CHHHHHHHHHhcCCCCCEEEE
Confidence 1 122333 56678999998874
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=80.07 E-value=3.3 Score=41.27 Aligned_cols=95 Identities=20% Similarity=0.181 Sum_probs=47.9
Q ss_pred CCCEEEEEcCCC-cHHHHHHHH-cCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC-CCceeEEEEecc
Q 014247 112 EGKVVVDVGCGT-GILSIFCAQ-AGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI-DEEVDVIISEWM 187 (428)
Q Consensus 112 ~~~~VLDiGcGt-G~ls~~la~-~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~-~~~~DlVvs~~~ 187 (428)
++.+|+-+|+|. |..+...++ .|+ +|+.+|.+ +-++.+.... + ..+.....+..++.. -..+|+|+...
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~~~~~~~l~~~~---g--~~v~~~~~~~~~l~~~l~~aDvVI~a~- 238 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDINIDRLRQLDAEF---G--GRIHTRYSNAYEIEDAVKRADLLIGAV- 238 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHhc---C--ceeEeccCCHHHHHHHHccCCEEEEcc-
Confidence 557899999983 444444444 377 79999998 5444332221 1 112211111122111 15789999743
Q ss_pred hhhhcchhhHHHHHHHHhcccccCeEEE
Q 014247 188 GYMLLYESMLGSVITARDRWLKRGGLIL 215 (428)
Q Consensus 188 ~~~l~~~~~~~~~l~~~~~~LkpgG~lv 215 (428)
.......+.-+-++..+.++||++++
T Consensus 239 --~~~g~~~p~lit~~~l~~mk~g~vIv 264 (370)
T TIGR00518 239 --LIPGAKAPKLVSNSLVAQMKPGAVIV 264 (370)
T ss_pred --ccCCCCCCcCcCHHHHhcCCCCCEEE
Confidence 11111111111234445578888776
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 428 | ||||
| 4hc4_A | 376 | Human Hmt1 Hnrnp Methyltransferase-Like Protein 6 ( | 7e-69 | ||
| 1g6q_1 | 328 | Crystal Structure Of Yeast Arginine Methyltransfera | 6e-61 | ||
| 1f3l_A | 321 | Crystal Structure Of The Conserved Core Of Protein | 3e-60 | ||
| 2fyt_A | 340 | Human Hmt1 Hnrnp Methyltransferase-Like 3 (S. Cerev | 4e-59 | ||
| 1ori_A | 343 | Structure Of The Predominant Protein Arginine Methy | 3e-55 | ||
| 1or8_A | 340 | Structure Of The Predominant Protein Arginine Methy | 4e-55 | ||
| 1orh_A | 353 | Structure Of The Predominant Protein Arginine Methy | 7e-55 | ||
| 3q7e_A | 349 | Crystal Structure Of Rat Protein Arginine Methyltra | 8e-55 | ||
| 3r0q_C | 376 | A Uniquely Open Conformation Revealed In The Crysta | 5e-52 | ||
| 3b3j_A | 480 | The 2.55 A Crystal Structure Of The Apo Catalytic D | 1e-46 | ||
| 2v74_B | 346 | Crystal Structure Of Coactivator-Associated Arginin | 2e-46 | ||
| 3b3f_A | 341 | The 2.2 A Crystal Structure Of The Catalytic Domain | 2e-46 | ||
| 4ikp_A | 341 | Crystal Structure Of Coactivator-associated Arginin | 2e-46 | ||
| 2y1w_A | 348 | Crystal Structure Of Coactivator Associated Arginin | 2e-46 |
| >pdb|4HC4|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like Protein 6 (S. Cerevisiae) Length = 376 | Back alignment and structure |
|
| >pdb|1G6Q|1 Chain 1, Crystal Structure Of Yeast Arginine Methyltransferase, Hmt1 Length = 328 | Back alignment and structure |
|
| >pdb|1F3L|A Chain A, Crystal Structure Of The Conserved Core Of Protein Arginine Methyltransferase Prmt3 Length = 321 | Back alignment and structure |
|
| >pdb|2FYT|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like 3 (S. Cerevisiae) Protein Length = 340 | Back alignment and structure |
|
| >pdb|1ORI|A Chain A, Structure Of The Predominant Protein Arginine Methyltransferase Prmt1 Length = 343 | Back alignment and structure |
|
| >pdb|1OR8|A Chain A, Structure Of The Predominant Protein Arginine Methyltransferase Prmt1 Length = 340 | Back alignment and structure |
|
| >pdb|1ORH|A Chain A, Structure Of The Predominant Protein Arginine Methyltransferase Prmt1 Length = 353 | Back alignment and structure |
|
| >pdb|3Q7E|A Chain A, Crystal Structure Of Rat Protein Arginine Methyltransferase 1 (Prmt1) M48l Mutant Length = 349 | Back alignment and structure |
|
| >pdb|3R0Q|C Chain C, A Uniquely Open Conformation Revealed In The Crystal Structure Of Arabidopsis Thaliana Protein Arginine Methyltransferase 10 Length = 376 | Back alignment and structure |
|
| >pdb|3B3J|A Chain A, The 2.55 A Crystal Structure Of The Apo Catalytic Domain Of Coactivator-Associated Arginine Methyl Transferase I(Carm1:28-507, Residues 28-146 And 479-507 Not Ordered) Length = 480 | Back alignment and structure |
|
| >pdb|2V74|B Chain B, Crystal Structure Of Coactivator-Associated Arginine Methyltransferase 1 (Carm1), In Complex With S-Adenosyl- Homocysteine Length = 346 | Back alignment and structure |
|
| >pdb|3B3F|A Chain A, The 2.2 A Crystal Structure Of The Catalytic Domain Of Coactivator- Associated Arginine Methyl Transferase I(Carm1,142-478), In Complex With S-Adenosyl Homocysteine Length = 341 | Back alignment and structure |
|
| >pdb|4IKP|A Chain A, Crystal Structure Of Coactivator-associated Arginine Methyltransferase 1 Length = 341 | Back alignment and structure |
|
| >pdb|2Y1W|A Chain A, Crystal Structure Of Coactivator Associated Arginine Methyltransferase 1 (Carm1) In Complex With Sinefungin And Indole Inhibitor Length = 348 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 428 | |||
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 1e-117 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 1e-116 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 1e-114 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 1e-114 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 1e-113 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 1e-106 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 3e-48 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 2e-32 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 2e-25 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 6e-23 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 2e-20 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 2e-18 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 3e-17 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 9e-16 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 6e-15 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 1e-13 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 6e-13 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 2e-12 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 2e-12 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 2e-11 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 3e-11 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 5e-11 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 8e-11 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 1e-10 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 1e-10 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 3e-10 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 3e-10 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 3e-10 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 4e-10 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 4e-10 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 7e-10 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 8e-10 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 1e-09 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 1e-09 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 2e-09 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 3e-09 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 4e-09 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 4e-09 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 5e-09 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 7e-09 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 7e-09 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 7e-09 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 8e-09 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 8e-09 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 8e-09 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 1e-08 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 1e-08 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 1e-08 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 2e-08 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 2e-08 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 3e-08 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 3e-08 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 3e-08 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 3e-08 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 3e-08 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 5e-08 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 5e-08 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 6e-08 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 8e-08 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 1e-07 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 1e-07 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 1e-07 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 2e-07 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 2e-07 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 2e-07 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 2e-07 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 2e-07 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 2e-07 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 2e-07 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 2e-07 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 2e-07 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 3e-07 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 4e-07 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 6e-07 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 6e-07 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 7e-07 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 7e-07 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 8e-07 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 8e-07 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 1e-06 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 2e-06 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 2e-06 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 3e-06 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-06 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 3e-06 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 6e-06 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 6e-06 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 7e-06 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 8e-06 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 9e-06 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 1e-05 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 1e-05 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 2e-05 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 3e-05 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 3e-05 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 4e-05 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 6e-05 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 6e-05 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 6e-05 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 8e-05 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 8e-05 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 8e-05 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 9e-05 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 1e-04 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 1e-04 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 1e-04 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 2e-04 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 2e-04 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 4e-04 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 4e-04 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 4e-04 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 5e-04 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 5e-04 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 6e-04 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 6e-04 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 7e-04 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 7e-04 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 7e-04 |
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* Length = 340 | Back alignment and structure |
|---|
Score = 344 bits (884), Expect = e-117
Identities = 125/373 (33%), Positives = 200/373 (53%), Gaps = 38/373 (10%)
Query: 50 SEHQQQQQQQQQNDRKPATPCTDFDVAYFHSYAHVGIHEEMIKDRVRTETYRAAIMQNQS 109
+ + D D YF SY H GIHEEM+KD++RTE+YR I QN
Sbjct: 2 GSSHHHHHHSSGLVPRGSDLQEDEDGVYFSSYGHYGIHEEMLKDKIRTESYRDFIYQNPH 61
Query: 110 FIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGR 169
+ KVV+DVGCGTGILS+F A+AGAK+V VD S+I QA ++++ N L D + ++ G+
Sbjct: 62 IFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGK 121
Query: 170 VEDVEIDEE-VDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTH 228
+E+V + E VDVIISEWMGY LL+ESML SV+ A++++L +GG + P T+ + V+
Sbjct: 122 IEEVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYPDICTISLVAVSD 181
Query: 229 PDRYSESIDFWRNVYGIDMSAMMPLAKQCAFEEPSVETITGENVLTWPHVVKHVDCYTIQ 288
+++++ I FW +VYG MS M K+ E VE + + +++ P +KH+DC+T
Sbjct: 182 VNKHADRIAFWDDVYGFKMSCM----KKAVIPEAVVEVLDPKTLISEPCGIKHIDCHTTS 237
Query: 289 IHELESIATTFKFKSMMRAPLHGFAFWFDVEFSTPAISPANNHIPPVVVGSSNNHPMDGC 348
I + ++ F K + A +FD+ F
Sbjct: 238 ISD-LEFSSDFTLKITRTSMCTAIAGYFDIYFE--------------------------- 269
Query: 349 QKKKRANPNEALVLSTAPEDPPTHWQQTMIYFYDPIEVEQDQLIEGSVVLSQSKENARFM 408
N + +V ST P+ THW+QT+ P V+ + ++G V + ++K++ R +
Sbjct: 270 -----KNCHNRVVFSTGPQSTKTHWKQTVFLLEKPFSVKAGEALKGKVTVHKNKKDPRSL 324
Query: 409 NIHLEYASGGRSF 421
+ L + +++
Sbjct: 325 TVTLTLNNSTQTY 337
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 Length = 328 | Back alignment and structure |
|---|
Score = 342 bits (877), Expect = e-116
Identities = 131/339 (38%), Positives = 189/339 (55%), Gaps = 37/339 (10%)
Query: 77 YFHSYAHVGIHEEMIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAK 136
YF SY H GIHEEM++D VRT +YR AI+QN+ + K+V+DVGCGTGILS+F A+ GAK
Sbjct: 3 YFDSYDHYGIHEEMLQDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAK 62
Query: 137 RVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDVEI-DEEVDVIISEWMGYMLLYES 195
V VD S I A E+V+ N +DK+ +L G++EDV + +VD+IISEWMGY LLYES
Sbjct: 63 HVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYFLLYES 122
Query: 196 MLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAMMPLAK 255
M+ +V+ ARD +L GGLI P ++++A + E +++W++VYG D S +P
Sbjct: 123 MMDTVLYARDHYLVEGGLIFPDKCSIHLAGLEDSQYKDEKLNYWQDVYGFDYSPFVP--- 179
Query: 256 QCAFEEPSVETITGENVLTWPHVVKHVDCYTIQIHELESIATTFKFKSMMRAPLHGFAFW 315
EP V+T+ NV T + D T++I +L + FK + + ++G W
Sbjct: 180 -LVLHEPIVDTVERNNVNTTSDKLIEFDLNTVKISDLA-FKSNFKLTAKRQDMINGIVTW 237
Query: 316 FDVEFSTPAISPANNHIPPVVVGSSNNHPMDGCQKKKRANPNEALVLSTAPEDPPTHWQQ 375
FD+ F P + ST P P THW+Q
Sbjct: 238 FDIVFPAP-------------------------------KGKRPVEFSTGPHAPYTHWKQ 266
Query: 376 TMIYFYDPIEVEQDQLIEGSVVLSQSKENARFMNIHLEY 414
T+ YF D ++ E IEG +V S +++N R +NI + Y
Sbjct: 267 TIFYFPDDLDAETGDTIEGELVCSPNEKNNRDLNIKISY 305
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A Length = 348 | Back alignment and structure |
|---|
Score = 338 bits (869), Expect = e-114
Identities = 123/354 (34%), Positives = 186/354 (52%), Gaps = 40/354 (11%)
Query: 72 DFDVAYFHSYAHVGIHEEMIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCA 131
V YF Y ++ + M++D VRT TY+ AI+QN + + K+V+DVGCG+GILS F A
Sbjct: 10 SSAVQYFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAA 69
Query: 132 QAGAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWMGYML 191
QAGA+++YAV+AS +A A +VK+NNLTD+++V+ G+VE+V + E+VD+IISE MGYML
Sbjct: 70 QAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISEPMGYML 129
Query: 192 LYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSE---SIDFWR--NVYGID 246
E ML S + A+ ++LK G + P+ +++AP T Y E +FW + +G+D
Sbjct: 130 FNERMLESYLHAK-KYLKPSGNMFPTIGDVHLAPFTDEQLYMEQFTKANFWYQPSFHGVD 188
Query: 247 MSAMMPLAKQCAFEEPSVETITGENVLTWPHVVKHVDCYTIQIHELESIATTFKFKSMMR 306
+SA+ A F +P V+T +L V V+ + +L I FKF +
Sbjct: 189 LSALRGAAVDEYFRQPVVDTFD-IRILMAKSVKYTVNFLEAKEGDLHRIEIPFKFHMLHS 247
Query: 307 APLHGFAFWFDVEFSTPAISPANNHIPPVVVGSSNNHPMDGCQKKKRANPNEALVLSTAP 366
+HG AFWFDV F G + LSTAP
Sbjct: 248 GLVHGLAFWFDVAF-------------------------IGSIMT--------VWLSTAP 274
Query: 367 EDPPTHWQQTMIYFYDPIEVEQDQLIEGSVVLSQSKENARFMNIHLEYASGGRS 420
+P THW Q F P+ + + G+ +L +K + ++I + G
Sbjct: 275 TEPLTHWYQVRCLFQSPLFAKAGDTLSGTCLLIANKRQSYDISIVAQVDQTGSK 328
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* Length = 349 | Back alignment and structure |
|---|
Score = 338 bits (867), Expect = e-114
Identities = 129/370 (34%), Positives = 200/370 (54%), Gaps = 39/370 (10%)
Query: 51 EHQQQQQQQQQNDRKPATPCTDFDVAYFHSYAHVGIHEEMIKDRVRTETYRAAIMQNQSF 110
+H Q ++ KP YF SYAH GIHEE++KD VRT TYR ++ N+
Sbjct: 5 DHHHMSCGQAESSEKPNAEDMTSKDYYFDSYAHFGIHEELLKDEVRTLTYRNSMFHNRHL 64
Query: 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRV 170
+ KVV+DVG GTGIL +F A+AGA++V ++ S I+ A ++VKAN L V ++ G+V
Sbjct: 65 FKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKV 124
Query: 171 EDVEI-DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHP 229
E+VE+ E+VD+IISEWMGY L YESML +V+ ARD+WL GLI P ATLY+ +
Sbjct: 125 EEVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDRATLYVTAIEDR 184
Query: 230 DRYSESIDFWRNVYGIDMSAMMPLAKQCAFEEPSVETITGENVLTWPHVVKHVDCYTIQI 289
I +W NVYG DMS + K A +EP V+ + + ++T ++K VD YT+++
Sbjct: 185 QYKDYKIHWWENVYGFDMSCI----KDVAIKEPLVDVVDPKQLVTNACLIKEVDIYTVKV 240
Query: 290 HELESIATTFKFKSMMRAPLHGFAFWFDVEFSTPAISPANNHIPPVVVGSSNNHPMDGCQ 349
+ + + F + +H +F++EF+
Sbjct: 241 ED-LTFTSPFCLQVKRNDYVHALVAYFNIEFT---------------------------- 271
Query: 350 KKKRANPNEALVLSTAPEDPPTHWQQTMIYFYDPIEVEQDQLIEGSVVLSQSKENARFMN 409
++ ST+PE P THW+QT+ Y D + V+ + I G++ + + +N R ++
Sbjct: 272 -----RCHKRTGFSTSPESPYTHWKQTVFYMEDYLTVKTGEEIFGTIGMRPNAKNNRDLD 326
Query: 410 IHLEYASGGR 419
++ G+
Sbjct: 327 FTIDLDFKGQ 336
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} Length = 480 | Back alignment and structure |
|---|
Score = 340 bits (872), Expect = e-113
Identities = 123/352 (34%), Positives = 186/352 (52%), Gaps = 40/352 (11%)
Query: 74 DVAYFHSYAHVGIHEEMIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA 133
V YF Y ++ + M++D VRT TY+ AI+QN + + K+V+DVGCG+GILS F AQA
Sbjct: 120 AVQYFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQA 179
Query: 134 GAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWMGYMLLY 193
GA+++YAV+AS +A A +VK+NNLTD+++V+ G+VE+V + E+VD+IISE MGYML
Sbjct: 180 GARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISEPMGYMLFN 239
Query: 194 ESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSE---SIDFWR--NVYGIDMS 248
E ML S + A+ ++LK G + P+ +++AP T Y E +FW + +G+D+S
Sbjct: 240 ERMLESYLHAK-KYLKPSGNMFPTIGDVHLAPFTDEQLYMEQFTKANFWYQPSFHGVDLS 298
Query: 249 AMMPLAKQCAFEEPSVETITGENVLTWPHVVKHVDCYTIQIHELESIATTFKFKSMMRAP 308
A+ A F +P V+T +L V V+ + +L I FKF +
Sbjct: 299 ALRGAAVDEYFRQPVVDTFD-IRILMAKSVKYTVNFLEAKEGDLHRIEIPFKFHMLHSGL 357
Query: 309 LHGFAFWFDVEFSTPAISPANNHIPPVVVGSSNNHPMDGCQKKKRANPNEALVLSTAPED 368
+HG AFWFDV F G + LSTAP +
Sbjct: 358 VHGLAFWFDVAF-------------------------IGSIMT--------VWLSTAPTE 384
Query: 369 PPTHWQQTMIYFYDPIEVEQDQLIEGSVVLSQSKENARFMNIHLEYASGGRS 420
P THW Q F P+ + + G+ +L +K + ++I + G
Sbjct: 385 PLTHWYQVRCLFQSPLFAKAGDTLSGTCLLIANKRQSYDISIVAQVDQTGSK 436
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} Length = 376 | Back alignment and structure |
|---|
Score = 318 bits (816), Expect = e-106
Identities = 130/366 (35%), Positives = 190/366 (51%), Gaps = 47/366 (12%)
Query: 74 DVAYFHSYAHVGIHEEMIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA 133
YF +Y+ + ++M+ DRVR + Y A+ QN+ EGK V+DVG G+GIL+I+ AQA
Sbjct: 25 YAQYFCTYSFLYHQKDMLSDRVRMDAYFNAVFQNKHHFEGKTVLDVGTGSGILAIWSAQA 84
Query: 134 GAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWMGYMLLY 193
GA++VYAV+A+ +A A +VKANNL V V+ G VED+ + E+VDVIISEWMGY LL
Sbjct: 85 GARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLPEKVDVIISEWMGYFLLR 144
Query: 194 ESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSE------SIDFWRNV----- 242
ESM SVI+ARDRWLK G++ PS+A +++AP+ + ++ W N
Sbjct: 145 ESMFDSVISARDRWLKPTGVMYPSHARMWLAPIKSNIADRKRNDFDGAMADWHNFSDEIK 204
Query: 243 --YGIDMSAM----MPLAKQCAFEEPSVETITGENVLTWPHVVKHVDCYTIQIHELESIA 296
YG+DM + ++ + + + ++ P +VK +DC T + E+E +
Sbjct: 205 SYYGVDMGVLTKPFAEEQEKYYIQTAMWNDLNPQQIIGTPTIVKEMDCLTASVSEIEEVR 264
Query: 297 TTFKFKSMMR-APLHGFAFWFDVEFSTPAISPANNHIPPVVVGSSNNHPMDGCQKKKRAN 355
+ M L GF WFDV+FS PA I
Sbjct: 265 SNVTSVINMEHTRLCGFGGWFDVQFSGRKEDPAQQEI----------------------- 301
Query: 356 PNEALVLSTAPEDPP-THWQQTMIYFYDPIEVEQDQLIEGSVVLSQSKENARFMNIHLEY 414
L+TAP + THW Q + +PI VE+ + +++S+SKEN R M I L
Sbjct: 302 -----ELTTAPSEQHCTHWGQQVFIMSNPINVEEGDNLNLGLLMSRSKENHRLMEIELNC 356
Query: 415 ASGGRS 420
S
Sbjct: 357 EIKEAS 362
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A Length = 745 | Back alignment and structure |
|---|
Score = 174 bits (441), Expect = 3e-48
Identities = 44/356 (12%), Positives = 101/356 (28%), Gaps = 82/356 (23%)
Query: 86 IHEEMIKDRVRTETYRAAIMQ-----NQSFIEGKVVVDVGCGTGILSIFCAQAGAK---- 136
++ +D+++ + Y A++ + V+ +G G G + ++ +
Sbjct: 378 VYNTFEQDQIKYDVYGEAVVGALKDLGADGRKTVVIYLLGGGRGPIGTKILKSEREYNNT 437
Query: 137 ----------RVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDVE------IDEEVD 180
++Y V+ + A+ + + +V ++ + + E+ D
Sbjct: 438 FRQGQESLKVKLYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAKDRGFEQPD 497
Query: 181 VIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESI---D 237
+I+SE +G E + + +LK + +P T Y+ P+ +
Sbjct: 498 IIVSELLGSFGDNE-LSPECLDGVTGFLKPTTISIPQKYTSYVKPIMSTHIHQTIKAQSI 556
Query: 238 FWRNVYGIDMSAMMPLAKQCAFEEPSVETITGENVLTWPHVVKHVDCYTIQIHELE---- 293
+ + P + N + +VV +
Sbjct: 557 PYLSRAIPSHGRGEPELDEDEMWIQKYPQGHVRNNMDQIYVVYLSKYIPLAETTKPVFTF 616
Query: 294 ----------SIATTFKFKSMMRAPLHGFAFWFDVEFSTPAISPANNHIPPVVVGSSNNH 343
+ + +F A L GFA +FD++ +
Sbjct: 617 EHPNFMNSSNERSDSIEFVMDRNADLMGFAGYFDLQLYKTVM------------------ 658
Query: 344 PMDGCQKKKRANPNEALVLSTAPEDPPTH---WQQTMIYFYDPIEVEQDQLIEGSV 396
LS P W +I D + V + I +
Sbjct: 659 ------------------LSIEPSTHTPGMVSWFPAVIPLRDQLRVGEGDRISLKI 696
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 122 bits (308), Expect = 2e-32
Identities = 38/195 (19%), Positives = 79/195 (40%), Gaps = 14/195 (7%)
Query: 77 YFHSYAHVGIHEEMIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAK 136
+ + E T +A + + E ++ D+GCGTG ++ A
Sbjct: 12 ELNLICDFFSNMERQGPGSPEVTLKA-LSFIDNLTEKSLIADIGCGTGGQTMVLAGHVTG 70
Query: 137 RVYAVDASDIAV-QANEVVKANNLTDKVIVLHGRVEDVEI-DEEVDVIISEWMGYMLLYE 194
+V +D + N + + L ++V + G ++D+ +EE+D+I SE Y + +E
Sbjct: 71 QVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEGAIYNIGFE 130
Query: 195 SMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYG--IDMSAMMP 252
L ++LK+GG + S + + +R +E DFW + Y + +
Sbjct: 131 RGLNEW----RKYLKKGGYLAVSECSWF-----TDERPAEINDFWMDAYPEIDTIPNQVA 181
Query: 253 LAKQCAFEEPSVETI 267
+ + + +
Sbjct: 182 KIHKAGYLPVATFIL 196
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 103 bits (257), Expect = 2e-25
Identities = 43/202 (21%), Positives = 86/202 (42%), Gaps = 19/202 (9%)
Query: 72 DFDVAYFHSYAHVGIHEEMIKDRV-RTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFC 130
DFD ++ +Y + + + E R A+ + + D+GCGTG ++F
Sbjct: 10 DFDFSFICNY-----FKLLKRQGPGSPEATRKAVSFINELTDDAKIADIGCGTGGQTLFL 64
Query: 131 AQAGAKRVYAVDASDIAVQ-ANEVVKANNLTDKVIVLHGRVEDVEI-DEEVDVIISEWMG 188
A ++ +D ++ NE N D+V + G ++++ +EE+D+I SE
Sbjct: 65 ADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEGAI 124
Query: 189 YMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYG--ID 246
Y + +E + ++LK+GG I S A+ +R +E DFW + Y
Sbjct: 125 YNIGFERGMNEW----SKYLKKGGFIAVSEASW-----FTSERPAEIEDFWMDAYPEISV 175
Query: 247 MSAMMPLAKQCAFEEPSVETIT 268
+ + ++ + + +
Sbjct: 176 IPTCIDKMERAGYTPTAHFILP 197
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253 | Back alignment and structure |
|---|
Score = 96.1 bits (239), Expect = 6e-23
Identities = 40/209 (19%), Positives = 72/209 (34%), Gaps = 29/209 (13%)
Query: 74 DVAYFHSYAHVGIHEEMIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA 133
D +F Y+ + +E +K + + K V+D+GCG G I+ A+
Sbjct: 10 DKHFFEQYSQMPRSKEGLKAAGEWHELKKMLPD----FNQKTVLDLGCGFGWHCIYAAEH 65
Query: 134 GAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDVEI-DEEVDVIISEWMGYMLL 192
GAK+V +D S+ + K + V +ED+ I + +V++S L
Sbjct: 66 GAKKVLGIDLSERML---TEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSL---ALH 119
Query: 193 YESMLGSVITARDRWLKRGG-LILPSYATLYMAPVTHPDRYSESID---FWRNVYGIDMS 248
Y + + LK G I ++ A E+ + + + Y
Sbjct: 120 YIASFDDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRY----- 174
Query: 249 AMMPLAKQCAFEEPSVETITGENVLTWPH 277
E GE+V +
Sbjct: 175 ---------FNESMRTSHFLGEDVQKYHR 194
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* Length = 225 | Back alignment and structure |
|---|
Score = 88.8 bits (220), Expect = 2e-20
Identities = 31/137 (22%), Positives = 53/137 (38%), Gaps = 17/137 (12%)
Query: 112 EGKVVVDVGCGTGILSIFCAQAG-AKRVYAVDASDIAVQ-ANEVVKANNLTDKVIVLHGR 169
+G +++DVG L I + G K A + + Q A + V+A+ L +K+ V
Sbjct: 15 QGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLAN 74
Query: 170 -VEDVEIDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTH 228
+ E ++V VI MG L+ R L+ G L + L + P
Sbjct: 75 GLAAFEETDQVSVITIAGMGGRLIA------------RILEEGLGKLANVERLILQPNNR 122
Query: 229 PDRYSESIDFWRNVYGI 245
D + + + I
Sbjct: 123 EDDLRIWL--QDHGFQI 137
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} Length = 244 | Back alignment and structure |
|---|
Score = 83.0 bits (205), Expect = 2e-18
Identities = 25/126 (19%), Positives = 47/126 (37%), Gaps = 15/126 (11%)
Query: 112 EGKVVVDVGCGTGILSIFCAQAG-AKRVYAVDASDIAVQ-ANEVVKANNLTDKVIVLHGR 169
+ + + D+G L F + A A + D Q A + V+++ LT+++ V G
Sbjct: 21 KNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGN 80
Query: 170 -VEDVEIDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTH 228
+ +E + +D I+ MG L + + + LIL P
Sbjct: 81 GLAVIEKKDAIDTIVIAGMGGTL----IRTILEEGAAKLAGVTKLIL--------QPNIA 128
Query: 229 PDRYSE 234
+ E
Sbjct: 129 AWQLRE 134
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} Length = 230 | Back alignment and structure |
|---|
Score = 79.5 bits (196), Expect = 3e-17
Identities = 31/137 (22%), Positives = 46/137 (33%), Gaps = 17/137 (12%)
Query: 112 EGKVVVDVGCGTGILSIFCAQAG-AKRVYAVDASDIAVQ-ANEVVKANNLTDKVIVLHGR 169
+G ++DVG L IF Q G A + + Q A + V + LT K+ V
Sbjct: 21 KGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLAN 80
Query: 170 V-EDVEIDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTH 228
E + +D I MG L+ L L TL + P
Sbjct: 81 GLSAFEEADNIDTITICGMGGRLIA------------DILNNDIDKLQHVKTLVLQPNNR 128
Query: 229 PDRYSESIDFWRNVYGI 245
D + + N + I
Sbjct: 129 EDDLRKWL--AANDFEI 143
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305 | Back alignment and structure |
|---|
Score = 76.7 bits (188), Expect = 9e-16
Identities = 23/134 (17%), Positives = 53/134 (39%), Gaps = 5/134 (3%)
Query: 90 MIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAK--RVYAVDASDIA 147
++ R R +R A+ ++ G VV V CG + + ++ +D A
Sbjct: 98 VLATRERHGHFRRALQRH--LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEA 155
Query: 148 VQ-ANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWMGYMLLYESMLGSVITARDR 206
+ A + + L ++ + ++ E D++ S + ++ + + +
Sbjct: 156 LDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLTSNGLNIYEPDDARVTELYRRFWQ 215
Query: 207 WLKRGGLILPSYAT 220
LK GG ++ S+ T
Sbjct: 216 ALKPGGALVTSFLT 229
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} Length = 205 | Back alignment and structure |
|---|
Score = 72.2 bits (178), Expect = 6e-15
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 112 EGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQ-ANEVVKANNLTDKVIVLHGRV 170
+ V DVG G+GIL+I + GAK V A D SD ++ A E N + D + +
Sbjct: 60 KPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLL 119
Query: 171 EDVEIDEEVDVII 183
DV D + D+I+
Sbjct: 120 ADV--DGKFDLIV 130
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* Length = 254 | Back alignment and structure |
|---|
Score = 69.2 bits (170), Expect = 1e-13
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Query: 112 EGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQ-ANEVVKANNLTDKVIVLHGRV 170
G V+D+G G+G+L+I + G K VD + + A K N + + L G +
Sbjct: 120 PGDKVLDLGTGSGVLAIAAEKLGGK-ALGVDIDPMVLPQAEANAKRNGVRPR--FLEGSL 176
Query: 171 EDVEIDEEVDVII 183
E D+++
Sbjct: 177 EAALPFGPFDLLV 189
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297 | Back alignment and structure |
|---|
Score = 67.9 bits (166), Expect = 6e-13
Identities = 37/241 (15%), Positives = 75/241 (31%), Gaps = 10/241 (4%)
Query: 78 FHS--YAHVGIHEEMIKDRVRTETYRAAIMQNQSFI-EGKVVVDVGCGTGILSIFCAQAG 134
H Y +E+ + +RT+ + A+ + + +D+G G G + F +
Sbjct: 45 IHVGLYKEPVDQDEIREASLRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKF 104
Query: 135 AKRVYAVDASDIAVQ-ANEVVKANNLTDKVIVLHGRVEDVEI-DEEVDVIISEWMGYMLL 192
+ ++ + + + E L D + V +G ++ D D I S+ L
Sbjct: 105 GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQ---DAFL 161
Query: 193 YESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAMMP 252
+ V R LK G++ +D + +
Sbjct: 162 HSPDKLKVFQECARVLKPRGVMA--ITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRS 219
Query: 253 LAKQCAFEEPSVETITGENVLTWPHVVKHVDCYTIQIHELESIATTFKFKSMMRAPLHGF 312
LAK+C + V + V + + +I S K + + G
Sbjct: 220 LAKECGLVTLRTFSRPDSLVHHYSKVKAELIKRSSEIASFCSPEFQANMKRGLEHWIEGG 279
Query: 313 A 313
Sbjct: 280 R 280
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243 | Back alignment and structure |
|---|
Score = 66.0 bits (161), Expect = 2e-12
Identities = 24/131 (18%), Positives = 46/131 (35%), Gaps = 15/131 (11%)
Query: 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRV 170
+ G +VD+GCG G + + GA V +D S+ + +A + +
Sbjct: 42 VGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKML---ARARAAGPDTGITYERADL 98
Query: 171 EDVEI-DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHP 229
+ + + + D+ S L Y + + + L GG + S HP
Sbjct: 99 DKLHLPQDSFDLAYS---SLALHYVEDVARLFRTVHQALSPGGHFVFS--------TEHP 147
Query: 230 DRYSESIDFWR 240
+ + W
Sbjct: 148 IYMAPARPGWA 158
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Length = 250 | Back alignment and structure |
|---|
Score = 66.0 bits (161), Expect = 2e-12
Identities = 30/199 (15%), Positives = 68/199 (34%), Gaps = 23/199 (11%)
Query: 72 DFDVAYFHSYAHVGIHEEMIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCA 131
++D + H + D + RA F ++++G G +
Sbjct: 7 NYDQEIKDTAGHKYAYN-FDFDVMHPFMVRAFT----PFFRPGNLLELGSFKGDFTSRLQ 61
Query: 132 QAGAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWMGYML 191
+ + V+AS+ A+ L D + +H R ED ++ D I+ + ++L
Sbjct: 62 EHFND-ITCVEASEEAIS----HAQGRLKDGITYIHSRFEDAQLPRRYDNIV---LTHVL 113
Query: 192 LYESMLGSVITA-RDRWLKRGGLILPS---------YATLYMAPVTHPDRYSESIDFWRN 241
+ +++ D WL GG + + M ++H +E+ +
Sbjct: 114 EHIDDPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGH 173
Query: 242 VYGIDMSAMMPLAKQCAFE 260
+ + A + +
Sbjct: 174 RCTYALDTLERDASRAGLQ 192
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273 | Back alignment and structure |
|---|
Score = 63.3 bits (154), Expect = 2e-11
Identities = 37/212 (17%), Positives = 68/212 (32%), Gaps = 14/212 (6%)
Query: 112 EGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQ-ANEVVKANNLTDKVIVLHGRV 170
G V+DVGCG G ++ A A RV + S V AN A L ++V +
Sbjct: 61 SGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADA 120
Query: 171 EDVEI-DEEVDVIISEWMG-YMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTH 228
D+ D D + + +M L + R L+ GG + ++
Sbjct: 121 MDLPFEDASFDAVWALESLHHMPDRGRALREMA----RVLRPGGTVA---IADFVLLAPV 173
Query: 229 PDRYSESIDFWRNVYGI----DMSAMMPLAKQCAFEEPSVETITGENVLTWPHVVKHVDC 284
E++D +R G+ + +Q S I+ + + + +
Sbjct: 174 EGAKKEAVDAFRAGGGVLSLGGIDEYESDVRQAELVVTSTVDISAQARPSLVKTAEAFEN 233
Query: 285 YTIQIHELESIATTFKFKSMMRAPLHGFAFWF 316
Q+ + + R +
Sbjct: 234 ARSQVEPFMGAEGLDRMIATFRGLAEVPEAGY 265
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209 | Back alignment and structure |
|---|
Score = 61.5 bits (149), Expect = 3e-11
Identities = 25/133 (18%), Positives = 51/133 (38%), Gaps = 11/133 (8%)
Query: 113 GKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQ-ANEVVKANNLTDKVIVLHGRVE 171
K V+D G G + + + Y ++ SD+ ++ A + NN K+ + G +
Sbjct: 24 DKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNF--KLNISKGDIR 81
Query: 172 DVEI-DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPD 230
+ DE + + S + + + ++ + R LK GGL T +
Sbjct: 82 KLPFKDESMSFVYSYGTIFHMRKNDVKEAIDEIK-RVLKPGGLA------CINFLTTKDE 134
Query: 231 RYSESIDFWRNVY 243
RY++ +
Sbjct: 135 RYNKGEKIGEGEF 147
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 | Back alignment and structure |
|---|
Score = 61.3 bits (149), Expect = 5e-11
Identities = 33/173 (19%), Positives = 62/173 (35%), Gaps = 23/173 (13%)
Query: 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAV-QANEVVKANNLTDKVIVLHGR 169
I +D+G G G LSI A+ + A+D S A + + NL D++ ++ G
Sbjct: 42 ITAGTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGD 101
Query: 170 VEDVEI-DEEVDVIISEWMGYML-----LYESMLGSVITARDRWLKRGG--LILPSYATL 221
V ++ I D D+I+S + + + R LK GG I +
Sbjct: 102 VHNIPIEDNYADLIVSRGSVFFWEDVATAFREIY--------RILKSGGKTYIGGGFGNK 153
Query: 222 YMAPVTHPDRYSESIDFWRNVYGI----DMSAMMPLAKQCAFEEPSVETITGE 270
+ + ++ D+ ++ + + E I G+
Sbjct: 154 ELRDSISAEMIRKNPDWKEFNRKNISQENVERFQNVLDEIGISS--YEIILGD 204
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220 | Back alignment and structure |
|---|
Score = 60.6 bits (147), Expect = 8e-11
Identities = 29/144 (20%), Positives = 51/144 (35%), Gaps = 12/144 (8%)
Query: 76 AYFHSYAHV--GIHEEMIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA 133
F +AH + + I+++ V++ G GTG L+ A
Sbjct: 7 GLFDEWAHTYDSFVQGEDIQYKEVFAHYEDILEDVVNKSFGNVLEFGVGTGNLTNKLLLA 66
Query: 134 GAKRVYAVDASD--IAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWMGYML 191
G VY ++ S + A E L + + G E+ +D I+S +
Sbjct: 67 GR-TVYGIEPSREMRMI-AKE-----KLPKEFSITEGDFLSFEVPTSIDTIVS-TYAFHH 118
Query: 192 LYESMLGSVITARDRWLKRGGLIL 215
L + I + L +GG I+
Sbjct: 119 LTDDEKNVAIAKYSQLLNKGGKIV 142
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199 | Back alignment and structure |
|---|
Score = 59.8 bits (145), Expect = 1e-10
Identities = 28/129 (21%), Positives = 52/129 (40%), Gaps = 9/129 (6%)
Query: 93 DRVRTETYRAAIMQNQ-----SFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIA 147
+ T+ Y ++ ++ +D+GCG G S++ A G V A D + ++
Sbjct: 8 ENYFTDKYELTRTHSEVLEAVKVVKPGKTLDLGCGNGRNSLYLAANGY-DVDAWDKNAMS 66
Query: 148 VQ-ANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWMGYMLLYESMLGSVITARDR 206
+ + NL D + + ++ D + D I+S + M L + +I R
Sbjct: 67 IANVERIKSIENL-DNLHTRVVDLNNLTFDRQYDFILSTVV-LMFLEAKTIPGLIANMQR 124
Query: 207 WLKRGGLIL 215
K GG L
Sbjct: 125 CTKPGGYNL 133
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 1e-10
Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 14/109 (12%)
Query: 112 EGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVE 171
E K V+D+GC +G L + G + V ++A A + +A D V++
Sbjct: 32 EWKEVLDIGCSSGALGAAIKENGTR-VSGIEAFPEAAE-----QAKEKLDHVVLGDIETM 85
Query: 172 DVEI-DEEVDVIISEWMGYML--LYESMLGSVITARDRWLKRGGLILPS 217
D+ +E+ D +I G +L L++ +VI ++K+ G+IL S
Sbjct: 86 DMPYEEEQFDCVI---FGDVLEHLFD--PWAVIEKVKPYIKQNGVILAS 129
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252 | Back alignment and structure |
|---|
Score = 59.5 bits (144), Expect = 3e-10
Identities = 35/165 (21%), Positives = 63/165 (38%), Gaps = 8/165 (4%)
Query: 77 YFHSYAHV--GIHEEMIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAG 134
+ A I+ I+ + I + + E + V+D+ CGTGI ++ A+ G
Sbjct: 4 LYTLLAEYYDTIYRRRIERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERG 63
Query: 135 AKRVYAVDASD--IAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWMGYMLL 192
V +D + + V A KA K+ L G V ++ E D + + M
Sbjct: 64 Y-EVVGLDLHEEMLRV-ARR--KAKERNLKIEFLQGDVLEIAFKNEFDAVTMFFSTIMYF 119
Query: 193 YESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESID 237
E L + + LK GG+ + + + P ++E
Sbjct: 120 DEEDLRKLFSKVAEALKPGGVFITDFPCWFYGGRDGPVVWNEQKG 164
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227 | Back alignment and structure |
|---|
Score = 58.8 bits (142), Expect = 3e-10
Identities = 37/193 (19%), Positives = 63/193 (32%), Gaps = 13/193 (6%)
Query: 112 EGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQ-ANEVVKANNLTDKVIVLHGRV 170
+ V+D+ CG G S G + V VD S+ ++ A E A + V + G
Sbjct: 38 KRGKVLDLACGVGGFSFLLEDYGFE-VVGVDISEDMIRKARE--YAKSRESNVEFIVGDA 94
Query: 171 EDVEI-DEEVDVIIS-EWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTH 228
+ D+ D +I + + + E L V R LK G + + L
Sbjct: 95 RKLSFEDKTFDYVIFIDSIVHFEPLE--LNQVFKEVRRVLKPSGKFIMYFTDLRELLPRL 152
Query: 229 PDRYSESIDFWRNVYGIDMSAMMPLAKQCAFEEPSVETITGENVLTWPHVVKHVDCYTIQ 288
+ +W + D + + E+ S NV V Y +
Sbjct: 153 KESLVVGQKYWISKVIPDQEERTVVI-EFKSEQDSFRVRF--NVWGKTGVELLAKLYFTK 209
Query: 289 IHELESIATTFKF 301
E E + +
Sbjct: 210 --EAEEKVGNYSY 220
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* Length = 241 | Back alignment and structure |
|---|
Score = 59.3 bits (143), Expect = 3e-10
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Query: 109 SFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQ-ANEVVKANNLTDKVIVLH 167
+ VVVD CG G +I A G RV A+D + + A + + DK+ +
Sbjct: 75 QSFKCDVVVDAFCGVGGNTIQFALTG-MRVIAIDIDPVKIALARNNAEVYGIADKIEFIC 133
Query: 168 GRVEDVEIDEEVDVII 183
G + + DV+
Sbjct: 134 GDFLLLASFLKADVVF 149
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216 | Back alignment and structure |
|---|
Score = 58.7 bits (142), Expect = 4e-10
Identities = 18/119 (15%), Positives = 39/119 (32%), Gaps = 5/119 (4%)
Query: 98 ETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQANEVVKAN 157
E + + + S +++GC G + A R+ +D A+
Sbjct: 37 ERHTQLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPHCK-RLTVIDVMPRAI---GRACQR 92
Query: 158 NL-TDKVIVLHGRVEDVEIDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLIL 215
+ + E D+I+ + Y L + + + I + L GG ++
Sbjct: 93 TKRWSHISWAATDILQFSTAELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLV 151
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 Length = 200 | Back alignment and structure |
|---|
Score = 58.1 bits (140), Expect = 4e-10
Identities = 22/74 (29%), Positives = 30/74 (40%), Gaps = 7/74 (9%)
Query: 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRV 170
I G+ V+D G G GIL+ GA+ V A D A++ A V + V
Sbjct: 50 IGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIET-----AKRNCGGVNFMVADV 104
Query: 171 EDVEIDEEVDVIIS 184
EI + D I
Sbjct: 105 S--EISGKYDTWIM 116
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} Length = 292 | Back alignment and structure |
|---|
Score = 58.8 bits (141), Expect = 7e-10
Identities = 26/204 (12%), Positives = 62/204 (30%), Gaps = 31/204 (15%)
Query: 77 YFHSYAHVGIHEEMIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-GA 135
Y + + G E R +++ + G+ V+D+GC G L++ A G
Sbjct: 18 YGNYCKYYGYRNPSC------EDGRLRVLK-PEWFRGRDVLDLGCNVGHLTLSIACKWGP 70
Query: 136 KRVYAVDASDIAVQ-ANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWMGYMLLYE 194
R+ +D + A + ++ + + D + E
Sbjct: 71 SRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSCFPAS- 129
Query: 195 SMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAMMPLA 254
+ + +A P +++ F NV + + ++
Sbjct: 130 ---------------------LTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRD 168
Query: 255 KQCAFEEPSVETITGENVLTWPHV 278
+ P + + ++ W H+
Sbjct: 169 DLVEAQTPEYDVVLCLSLTKWVHL 192
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Length = 286 | Back alignment and structure |
|---|
Score = 58.4 bits (141), Expect = 8e-10
Identities = 29/158 (18%), Positives = 57/158 (36%), Gaps = 11/158 (6%)
Query: 59 QQQNDRKPATPCTDFDVAYFHSYAHVGIHEEMIKDRVRTETYRAAIMQNQSFIEGKVVVD 118
Q + + + + + ++ + T ++ I V+D
Sbjct: 73 QAWHRVEALSDDLECTLGFYCKKED------YFSKKYNTTAIHGDVVDAAKIISPCKVLD 126
Query: 119 VGCGTGILSIFCAQAGAKRVYAVDASDIAVQ-ANEVVKANNLTDKVIVLHGRVEDVEIDE 177
+GCG G S++ + G V + D ++ ++ NE + NL + + I E
Sbjct: 127 LGCGQGRNSLYLSLLGYD-VTSWDHNENSIAFLNETKEKENL--NISTALYDINAANIQE 183
Query: 178 EVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLIL 215
D I+S + +M L + S+I GG L
Sbjct: 184 NYDFIVSTVV-FMFLNRERVPSIIKNMKEHTNVGGYNL 220
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218 | Back alignment and structure |
|---|
Score = 57.2 bits (138), Expect = 1e-09
Identities = 18/105 (17%), Positives = 38/105 (36%), Gaps = 10/105 (9%)
Query: 113 GKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVED 172
V+++ GTG + + RV A+D S + + L D V + D
Sbjct: 47 RGDVLELASGTGYWTRHLSGLAD-RVTALDGSAEMI---AEAGRHGL-DNVEFRQQDLFD 101
Query: 173 VEIDEEVDVIISEWMGYMLLY--ESMLGSVITARDRWLKRGGLIL 215
D + D + + + L + + + + + GG++
Sbjct: 102 WTPDRQWDAV---FFAHWLAHVPDDRFEAFWESVRSAVAPGGVVE 143
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 Length = 194 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 1e-09
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 112 EGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQ-ANEVVKANNLTDKVI-VLHGR 169
+ ++D+GCG G++ I A K D + A++ A E +K NNL + I V+H
Sbjct: 52 KDDDILDLGCGYGVIGIALADE-VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSD 110
Query: 170 VEDVEIDEEVDVIIS 184
+ + D + + II+
Sbjct: 111 LYENVKDRKYNKIIT 125
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Length = 256 | Back alignment and structure |
|---|
Score = 56.7 bits (137), Expect = 2e-09
Identities = 23/161 (14%), Positives = 53/161 (32%), Gaps = 6/161 (3%)
Query: 112 EGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAV-QANEVVKANNLTDKVIVLHGRV 170
G ++D+G G+G + A+ +D S + QA + ++++V +H
Sbjct: 36 PGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDA 95
Query: 171 EDVEIDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPD 230
+E+ DV ++ + LK GG++L P T
Sbjct: 96 AGYVANEKCDVAACVGATWIAGG---FAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEI 152
Query: 231 RYSESIDFWRNVYGIDMSAMMPLAKQCAFEEPSVETITGEN 271
+ + + + ++ ++ + E
Sbjct: 153 AQACGVSSTSDFLTL--PGLVGAFDDLGYDVVEMVLADQEG 191
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} Length = 183 | Back alignment and structure |
|---|
Score = 55.3 bits (134), Expect = 3e-09
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Query: 112 EGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQANEVVKAN---NLTDKVIVLHG 168
+ VVVDVGCG+G +++ A+ K VYA+D D A+ EV K N ++ G
Sbjct: 35 KDDVVVDVGCGSGGMTVEIAKR-CKFVYAIDYLDGAI---EVTKQNLAKFNIKNCQIIKG 90
Query: 169 RVEDVEIDEEVDVII 183
R EDV E +
Sbjct: 91 RAEDVLDKLEFNKAF 105
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227 | Back alignment and structure |
|---|
Score = 56.0 bits (135), Expect = 4e-09
Identities = 25/124 (20%), Positives = 43/124 (34%), Gaps = 14/124 (11%)
Query: 93 DRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS----DIAV 148
R + AI+ + + V+D+GCG G L A G VD D A
Sbjct: 33 IESRRQVTDQAILLAILGRQPERVLDLGCGEGWLLRALADRGI-EAVGVDGDRTLVDAAR 91
Query: 149 QANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWMGYMLLYESMLGSVITARDRWL 208
V + ++ D+I + + LL++ + +++A L
Sbjct: 92 A-----AGAGEVHLASYAQLAEAKVPVGKDYDLICA---NFALLHQD-IIELLSAMRTLL 142
Query: 209 KRGG 212
GG
Sbjct: 143 VPGG 146
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266 | Back alignment and structure |
|---|
Score = 56.3 bits (136), Expect = 4e-09
Identities = 31/173 (17%), Positives = 57/173 (32%), Gaps = 8/173 (4%)
Query: 112 EGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQ-ANEVVKANNLTDKVIVLHGRV 170
E V+D+G G G ++ + + +D V ANE V +K+I +
Sbjct: 55 ENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVS---GNNKIIFEANDI 111
Query: 171 EDVEI-DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHP 229
E + D+I S L E+ + +WLK G +L +
Sbjct: 112 LTKEFPENNFDLIYSRDAILALSLEN-KNKLFQKCYKWLKPTGTLL--ITDYCATEKENW 168
Query: 230 DRYSESIDFWRNVYGIDMSAMMPLAKQCAFEEPSVETITGENVLTWPHVVKHV 282
D + R I + + C F+ + ++ K++
Sbjct: 169 DDEFKEYVKQRKYTLITVEEYADILTACNFKNVVSKDLSDYWNQLLEVEHKYL 221
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 56.1 bits (135), Expect = 5e-09
Identities = 42/219 (19%), Positives = 83/219 (37%), Gaps = 28/219 (12%)
Query: 77 YFHSYAHVGIHEEMIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAK 136
Y H Y+ E ++ + ET + + + G V++ GCG G ++ A+
Sbjct: 6 YVHGYSE----REALRLSEQAETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPD 61
Query: 137 -RVYAVDASDIAV-QANEVVKANNLTDKVIVLHGRVEDVEI-DEEVDVIISEWMGYML-- 191
+ ++D S ++ +A E + N + + V L + + D D I ++ L
Sbjct: 62 AEITSIDISPESLEKARENTEKNGIKN-VKFLQANIFSLPFEDSSFDHIFVCFVLEHLQS 120
Query: 192 ---LYESMLGSVITARDRWLKRGGLIL---PSYATLYMAPVT--HPDRYSESIDFWRNVY 243
+S+ + LK GG I + + Y P + ++ I +
Sbjct: 121 PEEALKSLK--------KVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYMK 172
Query: 244 GIDMSA--MMPLAKQCAFEEPSVETITGENVLTWPHVVK 280
G + + PL ++ FE+ VE + P +V
Sbjct: 173 GNSLVGRQIYPLLQESGFEKIRVEPRMVYIDSSKPELVD 211
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197 | Back alignment and structure |
|---|
Score = 54.5 bits (131), Expect = 7e-09
Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 13/116 (11%)
Query: 112 EGKVVVDVGCGTGILSIFCAQA-GAK-RVYAVDASDIAVQ-ANEVVKANNLTDKVIVLHG 168
EG VVD CG G + F A G RV+ D D A+ + + NL D+V ++
Sbjct: 22 EGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKD 81
Query: 169 RVEDVE--IDEEVDVII-------SEWMGYMLLYESMLGSVITARDRWLKRGGLIL 215
++++ ID V ++ S E+ + ++ A L GG+I
Sbjct: 82 GHQNMDKYIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAM-ELLVTGGIIT 136
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 7e-09
Identities = 28/144 (19%), Positives = 62/144 (43%), Gaps = 13/144 (9%)
Query: 78 FHSYAHVGIHEEMIKDRVRTETYRAAIMQ--NQSFIEGKVVVDVGCGTGILSIFCAQAGA 135
++ +AH+ ++++I+ V + + I++ ++ + +D+ CGTG L+
Sbjct: 3 YNKFAHI--YDKLIRADVDYKKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFK 60
Query: 136 KRVYAVDASD--IAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEW--MGYML 191
+AVD S ++ A K + K + + ++ I+ + D+I Y +
Sbjct: 61 -NTWAVDLSQEMLSE-AEN--KFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNY-I 115
Query: 192 LYESMLGSVITARDRWLKRGGLIL 215
+ L A LK GG+ +
Sbjct: 116 IDSDDLKKYFKAVSNHLKEGGVFI 139
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 7e-09
Identities = 25/105 (23%), Positives = 42/105 (40%), Gaps = 13/105 (12%)
Query: 112 EGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVE 171
+ V+VD GCG G + + K +Y +D + IA++ + +K + +
Sbjct: 17 KKGVIVDYGCGNGFYCKYLLEFATK-LYCIDINVIALKE--------VKEKFDSVITLSD 67
Query: 172 DVEI-DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLIL 215
EI D VD I+ VI+ R LK G ++
Sbjct: 68 PKEIPDNSVDFIL---FANSFHDMDDKQHVISEVKRILKDDGRVI 109
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293 | Back alignment and structure |
|---|
Score = 55.4 bits (133), Expect = 8e-09
Identities = 36/166 (21%), Positives = 61/166 (36%), Gaps = 16/166 (9%)
Query: 64 RKPATPCTDFDVAYFHSYAHVGIHEEMIKD-RVRTETYRAAIMQNQSFIEGKVVVDVGCG 122
R Y A + + I D R RT Y+A ++ V+DV CG
Sbjct: 9 RSLGVAAEGIPDQYADGEA-ARVWQLYIGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACG 67
Query: 123 TGILSIFCAQAGAKRVYAVDAS----DIAVQANEVVKANNLTDKVIVLHGRV----EDVE 174
TG+ SI + G V +VDAS A++ + DK ++ +DV
Sbjct: 68 TGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVP 126
Query: 175 IDEEVDVIISEW--MGYML---LYESMLGSVITARDRWLKRGGLIL 215
+ D +I ++ +S + ++ GGL++
Sbjct: 127 AGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLV 172
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234 | Back alignment and structure |
|---|
Score = 54.8 bits (132), Expect = 8e-09
Identities = 24/125 (19%), Positives = 49/125 (39%), Gaps = 12/125 (9%)
Query: 96 RTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAK-RVYAVDASD--IAVQANE 152
+ Y ++ E ++D+G GTG+LS F + + VD S+ + + A
Sbjct: 28 FDDFYGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEI-AKN 86
Query: 153 VVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWMGYML--LYESMLGSVITARDRWLKR 210
+ N KV + + +E+ D+++S + L + + LK
Sbjct: 87 RFRGN---LKVKYIEADYSKYDFEEKYDMVVS---ALSIHHLEDEDKKELYKRSYSILKE 140
Query: 211 GGLIL 215
G+ +
Sbjct: 141 SGIFI 145
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* Length = 192 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 8e-09
Identities = 33/145 (22%), Positives = 57/145 (39%), Gaps = 14/145 (9%)
Query: 79 HSYAHVGIHEEMIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRV 138
+ VR IM + V VDVGCGTG +++ A +RV
Sbjct: 5 DEFIKNPSVPGPTAMEVR-----CLIMCLAEPGKNDVAVDVGCGTGGVTLELAGR-VRRV 58
Query: 139 YAVDASDIAVQ-ANEVVKANNLTDKVIVLHGRVEDV-EIDEEVDVIISEWMGYMLLYESM 196
YA+D + A+ ++ + L D V ++ G + ++D+ + +G
Sbjct: 59 YAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAV---VGGSG---GE 112
Query: 197 LGSVITARDRWLKRGGLILPSYATL 221
L ++ LK GG I+ + L
Sbjct: 113 LQEILRIIKDKLKPGGRIIVTAILL 137
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299 | Back alignment and structure |
|---|
Score = 55.3 bits (133), Expect = 1e-08
Identities = 35/211 (16%), Positives = 66/211 (31%), Gaps = 30/211 (14%)
Query: 9 NGHHHHHQPHQQERERMGGGLTSHKDRARRGGRRSRDSLRASEHQQQQQQQQQNDRKPAT 68
+ HHHHH GGL + + R + A
Sbjct: 3 SSHHHHHH---------SGGLVPRGSMSNQLERGPVRTPHADV--------LLASVGERG 45
Query: 69 PCTDFDVAYFHSYAHVGIHEEMIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSI 128
DF Y A + ++I+D T R ++ V+++ G G L+
Sbjct: 46 VLCDF---YDEGAADT--YRDLIQDADGTSEAREFA--TRTGPVSGPVLELAAGMGRLTF 98
Query: 129 FCAQAGAKRVYAVDAS----DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIIS 184
G V A++ S + ++ D+ ++ G + +D+ ++
Sbjct: 99 PFLDLGW-EVTALELSTSVLAAF-RKRLAEAPADVRDRCTLVQGDMSAFALDKRFGTVVI 156
Query: 185 EWMGYMLLYESMLGSVITARDRWLKRGGLIL 215
L E+ + + L+ GG L
Sbjct: 157 SSGSINELDEADRRGLYASVREHLEPGGKFL 187
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211 | Back alignment and structure |
|---|
Score = 54.1 bits (130), Expect = 1e-08
Identities = 26/122 (21%), Positives = 43/122 (35%), Gaps = 10/122 (8%)
Query: 112 EGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAV-QANEVVKANNLTDKVIVLHGRV 170
G ++++GCG G + AG V A D S +A+ + V
Sbjct: 43 AGAKILELGCGAGYQAEAMLAAGF-DVDATDGSPELAAEASRRLGRP-------VRTMLF 94
Query: 171 EDVEIDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPD 230
++ + D + + + + L V+ R LK GGL SY +
Sbjct: 95 HQLDAIDAYDAVWA-HACLLHVPRDELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLA 153
Query: 231 RY 232
RY
Sbjct: 154 RY 155
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* Length = 336 | Back alignment and structure |
|---|
Score = 55.2 bits (133), Expect = 1e-08
Identities = 35/116 (30%), Positives = 56/116 (48%), Gaps = 16/116 (13%)
Query: 101 RAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQ-ANEVVKANNL 159
RA IM+ VVVD+ G G SI A AK++YA+D + A++ + +K N L
Sbjct: 186 RARIMKK--VSLNDVVVDMFAGVGPFSI--ACKNAKKIYAIDINPHAIELLKKNIKLNKL 241
Query: 160 TDKVIVLHGRVEDV-EIDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLI 214
K+I + DV E+D + + +I M L + + A ++ GG+I
Sbjct: 242 EHKIIPILS---DVREVDVKGNRVI------MNLPKFAHKFIDKAL-DIVEEGGVI 287
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203 | Back alignment and structure |
|---|
Score = 53.3 bits (128), Expect = 2e-08
Identities = 20/101 (19%), Positives = 41/101 (40%), Gaps = 8/101 (7%)
Query: 116 VVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDVEI 175
++DVG GTG + A G ++ ++ + V+ A V HG + D+
Sbjct: 45 ILDVGSGTGRWTGHLASLGH-QIEGLEPATRLVEL-----ARQTHPSVTFHHGTITDLSD 98
Query: 176 -DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLIL 215
+ +++ W + + L + A ++ GG +L
Sbjct: 99 SPKRWAGLLA-WYSLIHMGPGELPDALVALRMAVEDGGGLL 138
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284 | Back alignment and structure |
|---|
Score = 54.2 bits (130), Expect = 2e-08
Identities = 29/148 (19%), Positives = 62/148 (41%), Gaps = 15/148 (10%)
Query: 112 EGKVVVDVGCGTGILSIFCAQAGAK--RVYAVDASDIAV-QANEVVKANNLTDKVIVLHG 168
+ +VD GCG G L + + + +D+ + + +A E L L G
Sbjct: 22 KPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARE--LFRLLPYDSEFLEG 79
Query: 169 RVEDVEIDEEVDVIISEWM-GYMLLYESMLGSVITARDRWLKRGGLIL---PSYATLYMA 224
++E++++ D+ I +M E+ML +I +K+GG I+ P + + +
Sbjct: 80 DATEIELNDKYDIAICHAFLLHMTTPETMLQKMI----HSVKKGGKIICFEPHWISNMAS 135
Query: 225 PVTHPDRYSE--SIDFWRNVYGIDMSAM 250
+ ++ SE + + ++ D
Sbjct: 136 YLLDGEKQSEFIQLGVLQKLFESDTQRN 163
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* Length = 185 | Back alignment and structure |
|---|
Score = 52.6 bits (126), Expect = 3e-08
Identities = 21/113 (18%), Positives = 44/113 (38%), Gaps = 11/113 (9%)
Query: 112 EGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVE 171
+ +VVD G G + F A +K+VYA D + A+ ++ + ++ E
Sbjct: 22 DESIVVDATMGNGNDTAFLAGL-SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHE 80
Query: 172 DVE--IDEEVDVII-------SEWMGYMLLYESMLGSVITARDRWLKRGGLIL 215
+++ + E + I S + + L ++ L+ GG +
Sbjct: 81 NLDHYVREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKIL-DRLEVGGRLA 132
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 Length = 207 | Back alignment and structure |
|---|
Score = 53.2 bits (127), Expect = 3e-08
Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 5/96 (5%)
Query: 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQ-ANEVVKANNLTDKVIVLHGR 169
IEGKVV D+G GTG+LS GAK V V+ AV E + KV +
Sbjct: 48 IEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGD-- 105
Query: 170 VEDVEIDEEVDVIISEWMGYMLLYESMLGSVITARD 205
E + VD++I + ++ A +
Sbjct: 106 --VSEFNSRVDIVIMNPPFGSQRKHADRPFLLKAFE 139
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 Length = 396 | Back alignment and structure |
|---|
Score = 54.4 bits (131), Expect = 3e-08
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 8/89 (8%)
Query: 101 RAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQ-ANEVVKANNL 159
R A+ + G V+DV TG +I A AGA V +D S A++ A E K N +
Sbjct: 208 RLALEKWVQ--PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGV 265
Query: 160 TDKVIVLHGRVEDV-----EIDEEVDVII 183
D++ + G + + E+ D+++
Sbjct: 266 EDRMKFIVGSAFEEMEKLQKKGEKFDIVV 294
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} Length = 259 | Back alignment and structure |
|---|
Score = 53.6 bits (129), Expect = 3e-08
Identities = 12/73 (16%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Query: 116 VVDVGCGTGILSIFCAQAGAKRVYAVDASDIAV-QANEVVKANNLTDKVIVLHGRVEDVE 174
++D+ G GI+ + + ++ V+ + A V N L D++ ++ ++ +
Sbjct: 53 IIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKIT 112
Query: 175 I---DEEVDVIIS 184
E D++
Sbjct: 113 DLIPKERADIVTC 125
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217 | Back alignment and structure |
|---|
Score = 53.0 bits (127), Expect = 3e-08
Identities = 25/145 (17%), Positives = 49/145 (33%), Gaps = 16/145 (11%)
Query: 101 RAAIMQNQSFIEGKVVVDVGCGTGILS-IFCAQAGAKRVYAVDASDIAVQ-ANEVVKANN 158
++ + V+D+GCG G L I + +++ VD S +++ A E +
Sbjct: 18 MNGVVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLR 77
Query: 159 LTDKVI----VLHGRVEDVEI-DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGL 213
L ++ G + + D L S LG+ + + +
Sbjct: 78 LPRNQWERLQLIQGALTYQDKRFHGYDAATV-IEVIEHLDLSRLGAFERVLFEFAQPKIV 136
Query: 214 IL--------PSYATLYMAPVTHPD 230
I+ +A L + H D
Sbjct: 137 IVTTPNIEYNVKFANLPAGKLRHKD 161
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219 | Back alignment and structure |
|---|
Score = 52.3 bits (125), Expect = 5e-08
Identities = 23/145 (15%), Positives = 52/145 (35%), Gaps = 16/145 (11%)
Query: 101 RAAIMQNQSFIEGKVVVDVGCGTGILS-IFCAQAGAKRVYAVDASDIAVQ-ANEVVKANN 158
++ + K V+D+GCG G L + +++ VD S ++ A + +K +
Sbjct: 18 LGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDR 77
Query: 159 LTD----KVIVLHGRVEDV-EIDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGL 213
L + ++ + + + D + L E+ L + + + +
Sbjct: 78 LPEMQRKRISLFQSSLVYRDKRFSGYDAATVIEVIEH-LDENRLQAFEKVLFEFTRPQTV 136
Query: 214 IL--------PSYATLYMAPVTHPD 230
I+ Y L+ + H D
Sbjct: 137 IVSTPNKEYNFHYGNLFEGNLRHRD 161
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245 | Back alignment and structure |
|---|
Score = 52.7 bits (126), Expect = 5e-08
Identities = 21/105 (20%), Positives = 42/105 (40%), Gaps = 3/105 (2%)
Query: 113 GKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAV-QANEVVKANNLTDKVIVLHGRVE 171
++D CG G + F +Q RV +D S A+ A + A N++ +++ +
Sbjct: 57 ELPLIDFACGNGTQTKFLSQFFP-RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQ 115
Query: 172 DVEIDEEV-DVIISEWMGYMLLYESMLGSVITARDRWLKRGGLIL 215
+I E+ D I G+ + + + L + G +
Sbjct: 116 AAQIHSEIGDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMY 160
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383 | Back alignment and structure |
|---|
Score = 53.2 bits (127), Expect = 6e-08
Identities = 40/229 (17%), Positives = 75/229 (32%), Gaps = 33/229 (14%)
Query: 59 QQQNDRKPATPCTDFDVAYFHSYAHVGIHEEMIKDRVRTETY--RAAIMQNQSFIEGKVV 116
Q D K + V H I +E++ E + + + +EG V
Sbjct: 34 QSSADLKTSACKLAAAVPESHRKILADIADEVL------EKFYGCGSTLPADGSLEGATV 87
Query: 117 VDVGCGTGILSIFCAQA-GAK-RVYAVDASD--------IAVQANEVVKANNLTDKVIVL 166
+D+GCGTG ++ G +V VD D E + V L
Sbjct: 88 LDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFL 147
Query: 167 HGRVEDVEI-------DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYA 219
G +E++ D VD++IS + + ++ R L+ GG + Y
Sbjct: 148 KGFIENLATAEPEGVPDSSVDIVISN---CVCNLSTNKLALFKEIHRVLRDGGEL---YF 201
Query: 220 TLYMAPVTHPDRYSESIDFWRNV--YGIDMSAMMPLAKQCAFEEPSVET 266
+ A + + + + + L + F + + +
Sbjct: 202 SDVYADRRLSEAAQQDPILYGECLGGALYLEDFRRLVAEAGFRDVRLVS 250
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} Length = 230 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 8e-08
Identities = 15/75 (20%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Query: 112 EGKVVVDVGCGTGILSIFCAQAGAK-RVYAVDASDIAVQ-ANEVVKANNLTDKVIVLHGR 169
G+V +++G G + A+ +V A + + + A ++ NN +++ +G
Sbjct: 55 GGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGG 114
Query: 170 VEDVEIDEEVDVIIS 184
+ ++ DVI S
Sbjct: 115 IIKGVVEGTFDVIFS 129
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240 | Back alignment and structure |
|---|
Score = 51.8 bits (124), Expect = 1e-07
Identities = 33/207 (15%), Positives = 69/207 (33%), Gaps = 36/207 (17%)
Query: 77 YFHSYAHVGIHEEMIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAK 136
YF E++K R+R F + V+D+GCG G C + G +
Sbjct: 14 YFLFEEKFRGSRELVKARLRRY--------IPYFKGCRRVLDIGCGRGEFLELCKEEGIE 65
Query: 137 RVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDVEI---DEEVDVIISEWMGYML-- 191
VD ++ ++ E K V+ + D+ +D ++ + + +
Sbjct: 66 -SIGVDINEDMIKFCE--------GKFNVVKSDAIEYLKSLPDKYLDGVM---ISHFVEH 113
Query: 192 LYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRN---VYGIDMS 248
L L +++ +K I+ +P I+F+ + +
Sbjct: 114 LDPERLFELLSLCYSKMKYSSYIVIE--------SPNPTSLYSLINFYIDPTHKKPVHPE 165
Query: 249 AMMPLAKQCAFEEPSVETITGENVLTW 275
+ + + F + +E LT
Sbjct: 166 TLKFILEYLGFRDVKIEFFEECEELTK 192
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 1e-07
Identities = 28/110 (25%), Positives = 42/110 (38%), Gaps = 12/110 (10%)
Query: 112 EGKVVVDVGCGTGILSIFCAQAGAK--RVYAVDASDIAVQ-ANEVVKANNLTDKVIVLHG 168
EG V+DVG G G + ++ + +VYA+D + V A E V L + V VL
Sbjct: 37 EGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKN-VEVLKS 95
Query: 169 RVEDVEI-DEEVDVIISEWMGYMLL--YESMLGSVITARDRWLKRGGLIL 215
+ + D VD I + L L + R K +
Sbjct: 96 EENKIPLPDNTVDFIFMA-FTFHELSEPLKFLEELK----RVAKPFAYLA 140
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} Length = 343 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 1e-07
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Query: 105 MQNQSFIEGKVVVDVGCGTGILSIFCAQAGAK-RVYAVDASDIAVQ-ANEVVKANNLTDK 162
+ + V+DVGCG G+LS+ A+ K R+ D S AV+ + + AN + +
Sbjct: 189 LSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGE 248
Query: 163 VIVLHGRVEDVEIDEEVDVIIS 184
V + E+ D+IIS
Sbjct: 249 VFASNV---FSEVKGRFDMIIS 267
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* Length = 381 | Back alignment and structure |
|---|
Score = 51.9 bits (124), Expect = 2e-07
Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 112 EGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQ-ANEVVKANNLTDKVIVLHGRV 170
G+ V+D+G G G L++ A+ GA+ V V+ +V + ++AN L + +
Sbjct: 233 RGRQVLDLGAGYGALTLPLARMGAE-VVGVEDDLASVLSLQKGLEANALKAQALHSDVD- 290
Query: 171 EDVEIDEEVDVIIS 184
E + + D+I++
Sbjct: 291 EALTEEARFDIIVT 304
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} SCOP: c.66.1.47 PDB: 3k6r_A 3a25_A* 3a26_A* Length = 278 | Back alignment and structure |
|---|
Score = 51.5 bits (123), Expect = 2e-07
Identities = 22/108 (20%), Positives = 40/108 (37%), Gaps = 8/108 (7%)
Query: 108 QSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQ-ANEVVKANNLTDKVIVL 166
+ ++VVD+ G G LS+ A G +V A++ + E + N + D++
Sbjct: 121 KVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAY 180
Query: 167 HGRVEDVEIDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLI 214
+ D + D I+ M + A K G +I
Sbjct: 181 NMDNRDFPGENIADRIL------MGYVVRTHEFIPKAL-SIAKDGAII 221
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* Length = 312 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 2e-07
Identities = 28/175 (16%), Positives = 52/175 (29%), Gaps = 13/175 (7%)
Query: 112 EGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQ-ANEVVKANNLTDKVIVLHGRV 170
+VD GCG G + + RV V S N + + D V +
Sbjct: 117 PDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNM 176
Query: 171 EDVEIDEEVDVIISEWMGYMLLYESM----LGSVITARDRWLKRGGLILPSYATLYMAPV 226
D D+ + + W ES L + + R+LK GG + + +
Sbjct: 177 LDTPFDK--GAVTASWN-----NESTMYVDLHDLFSEHSRFLKVGGRYV-TITGCWNPRY 228
Query: 227 THPDRYSESIDFWRNVYGIDMSAMMPLAKQCAFEEPSVETITGENVLTWPHVVKH 281
P ++ I+ + ++ +T + + W
Sbjct: 229 GQPSKWVSQINAHFECNIHSRREYLRAMADNRLVPHTIVDLTPDTLPYWELRATS 283
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195 | Back alignment and structure |
|---|
Score = 50.2 bits (120), Expect = 2e-07
Identities = 21/105 (20%), Positives = 38/105 (36%), Gaps = 7/105 (6%)
Query: 112 EGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVE 171
G ++D GCG G + + ++ G V D I + A + + G +
Sbjct: 46 RGAKILDAGCGQGRIGGYLSKQGH-DVLGTDLDPILIDY-----AKQDFPEARWVVGDLS 99
Query: 172 DVEI-DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLIL 215
+I + + D+I+S L E + R L G +
Sbjct: 100 VDQISETDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAV 144
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 Length = 207 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 2e-07
Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 11/81 (13%)
Query: 110 FIEGKVVVDVGCGTG----ILSIFCAQAGAKRVYAVDASD--IAVQANEVVKANNLTDKV 163
+++G+ +DVG G G LSI + +D+ + +V L + +
Sbjct: 63 YLQGERFIDVGTGPGLPGIPLSIVRPE---AHFTLLDSLGKRVRFL-RQVQHELKLEN-I 117
Query: 164 IVLHGRVEDVEIDEEVDVIIS 184
+ RVE+ + D +IS
Sbjct: 118 EPVQSRVEEFPSEPPFDGVIS 138
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263 | Back alignment and structure |
|---|
Score = 51.0 bits (122), Expect = 2e-07
Identities = 26/153 (16%), Positives = 58/153 (37%), Gaps = 12/153 (7%)
Query: 67 ATPCTDFDVAYFHSYAHV--GIHEEMIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTG 124
++ Y A + +H+ KD R AA+++ S + ++DV CGTG
Sbjct: 4 SSATAGPQADYSGEIAELYDLVHQGKGKDYHREAADLAALVRRHS-PKAASLLDVACGTG 62
Query: 125 ILSIFCAQAGAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIIS 184
+ A + V ++ S + A ++ HG + D + +
Sbjct: 63 MHLRHLADSFG-TVEGLELSADMLA-----IARRRNPDAVLHHGDMRDFSLGRRFSAVTC 116
Query: 185 EW--MGYMLLYESMLGSVITARDRWLKRGGLIL 215
+ +G+ L ++ L + + + G+++
Sbjct: 117 MFSSIGH-LAGQAELDAALERFAAHVLPDGVVV 148
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Length = 235 | Back alignment and structure |
|---|
Score = 50.4 bits (120), Expect = 2e-07
Identities = 20/101 (19%), Positives = 40/101 (39%), Gaps = 3/101 (2%)
Query: 116 VVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQ-ANEVVKANNLTDKVIVLHGRVEDVE 174
+ GCG G + A + V +D S+ A+ ANE ++ + + V
Sbjct: 70 ALVPGCGGGHDVVAMASPE-RFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWR 128
Query: 175 IDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLIL 215
E D+I +++ + + M + + LK G ++
Sbjct: 129 PTELFDLIF-DYVFFCAIEPEMRPAWAKSMYELLKPDGELI 168
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 2e-07
Identities = 20/107 (18%), Positives = 42/107 (39%), Gaps = 9/107 (8%)
Query: 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRV 170
E ++DV CGTG + ++ S+ + A + G +
Sbjct: 39 PEASSLLDVACGTGTHLEHFTKEFG-DTAGLELSEDMLT-----HARKRLPDATLHQGDM 92
Query: 171 EDVEIDEEVDVIISEW--MGYMLLYESMLGSVITARDRWLKRGGLIL 215
D + + ++S + +GY L LG+ + + L+ GG+++
Sbjct: 93 RDFRLGRKFSAVVSMFSSVGY-LKTTEELGAAVASFAEHLEPGGVVV 138
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202 | Back alignment and structure |
|---|
Score = 49.9 bits (119), Expect = 2e-07
Identities = 21/116 (18%), Positives = 48/116 (41%), Gaps = 8/116 (6%)
Query: 102 AAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAV-QANEVVKANNLT 160
++ + I ++ + G G + F A G V AVD S + + +A ++ + +
Sbjct: 19 DFLVSVANQIPQGKILCLAEGEGRNACFLASLGY-EVTAVDQSSVGLAKAKQLAQEKGVK 77
Query: 161 DKVIVLHGRVEDVEI-DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLIL 215
+ + + D +I + + I+ + L S+ + + LK GG+ +
Sbjct: 78 --ITTVQSNLADFDIVADAWEGIV---SIFCHLPSSLRQQLYPKVYQGLKPGGVFI 128
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299 | Back alignment and structure |
|---|
Score = 51.2 bits (122), Expect = 3e-07
Identities = 23/115 (20%), Positives = 43/115 (37%), Gaps = 15/115 (13%)
Query: 112 EGKVVVDVGCGTGILSIFCAQAGA--KRVYAVDASD--IAVQANEVVKANNLTDKVIVLH 167
E K++VDVGCG G ++ AQ +++ D S I + + V
Sbjct: 36 ERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKI 95
Query: 168 GRVEDVEI-------DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLIL 215
+D + +++D+I + + +E S L++ G I
Sbjct: 96 SSSDDFKFLGADSVDKQKIDMITAVECAHWFDFEKFQRSA----YANLRKDGTIA 146
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242 | Back alignment and structure |
|---|
Score = 49.9 bits (119), Expect = 4e-07
Identities = 27/183 (14%), Positives = 61/183 (33%), Gaps = 11/183 (6%)
Query: 88 EEMIKDRVRTETYRAAIMQNQSFI-EGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDI 146
+ ++ + + I + ++ + V+DVGCG G + ++ G + VD S++
Sbjct: 28 NQNSQEMWDSGSRSTIIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRTGY-KAVGVDISEV 86
Query: 147 AVQANEVVKANNLTDKVIVLHGRVEDVEI-DEEVDVIISEWMGYMLLYESMLGSVITARD 205
+ + K + + G + + +E+ + I++ L + +
Sbjct: 87 MI---QKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAI---NSLEWTEEPLRALNEIK 140
Query: 206 RWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAMMPLAKQCAFEEPSVE 265
R LK G A L + Y + L K+ F+
Sbjct: 141 RVLKSDGYAC--IAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVVDGI 198
Query: 266 TIT 268
+
Sbjct: 199 GVY 201
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 6e-07
Identities = 36/144 (25%), Positives = 55/144 (38%), Gaps = 15/144 (10%)
Query: 112 EGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASD--IAVQANEVVKANNLTDKVIVLHGR 169
GK + D+GCGTG ++ A V VD S+ + + A E KA V
Sbjct: 33 PGKRIADIGCGTGTATLLLADHY--EVTGVDLSEEMLEI-AQE--KAMETNRHVDFWVQD 87
Query: 170 VEDVEIDEEVDVIISEW--MGYMLLYESMLGSVITARDRWLKRGGLIL-----PSYATLY 222
+ ++E+ E VD I + Y L E+ + + R L GG +L P
Sbjct: 88 MRELELPEPVDAITILCDSLNY-LQTEADVKQTFDSAARLLTDGGKLLFDVHSPYKMETL 146
Query: 223 MAPVTHPDRYSESIDFWRNVYGID 246
T+ +S W G +
Sbjct: 147 FNGKTYATHAEQSSYIWFADPGEE 170
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 6e-07
Identities = 32/168 (19%), Positives = 61/168 (36%), Gaps = 16/168 (9%)
Query: 100 YRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQANEVVKANNL 159
Y + + + + V++G GTG + K V+ S+ E+ + +
Sbjct: 35 YLSELQAVKCLLPEGRGVEIGVGTGRFA-----VPLKIKIGVEPSERMA---EIARKRGV 86
Query: 160 TDKVIVLHGRVEDVEI-DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSY 218
VL G E++ + DE D + M + + + R LK+GG ++
Sbjct: 87 F----VLKGTAENLPLKDESFDFAL---MVTTICFVDDPERALKEAYRILKKGGYLIVGI 139
Query: 219 ATLYMAPVTHPDRYSESIDFWRNVYGIDMSAMMPLAKQCAFEEPSVET 266
++ E F++N +M L ++ FEE V
Sbjct: 140 VDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQ 187
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} Length = 375 | Back alignment and structure |
|---|
Score = 49.9 bits (119), Expect = 7e-07
Identities = 23/115 (20%), Positives = 40/115 (34%), Gaps = 8/115 (6%)
Query: 105 MQNQSFIEGKVVVDVGCGTGILSIFCAQAGAK-RVYAVDASDIAVQ-ANEVVKANNLT-- 160
MQ+ +VD+GCG G++ + + +V VD S +AV + V+ N
Sbjct: 215 MQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEAL 274
Query: 161 DKVIVLHGRVEDVEIDEEVDVIISEW---MGYMLLYESMLGSVITARDRWLKRGG 212
D+ + + ++ + L AR LK G
Sbjct: 275 DRCEFMINNALSGVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRC-LKING 328
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Length = 259 | Back alignment and structure |
|---|
Score = 49.1 bits (117), Expect = 7e-07
Identities = 21/169 (12%), Positives = 54/169 (31%), Gaps = 26/169 (15%)
Query: 113 GKVVVDVGCGTGILS-IFCAQAGAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVE 171
D+GCG G + + + G + +D+ + + KA + +
Sbjct: 34 VLNGYDLGCGPGNSTELLTDRYGVNVITGIDSD-----DDMLEKAADRLPNTNFGKADLA 88
Query: 172 DVEIDEEVDVIIS----EWMGYMLLYESMLGSVITARDRWLKRGGLIL---------PSY 218
+ ++ D++ + +W+ +V++ L+ GG++ P++
Sbjct: 89 TWKPAQKADLLYANAVFQWV-------PDHLAVLSQLMDQLESGGVLAVQMPDNLQEPTH 141
Query: 219 ATLYMAPVTHPDRYSESIDFWRNVYGIDMSAMMPLAKQCAFEEPSVETI 267
++ P + + S R S + T+
Sbjct: 142 IAMHETADGGPWKDAFSGGGLRRKPLPPPSDYFNALSPKSSRVDVWHTV 190
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298 | Back alignment and structure |
|---|
Score = 49.3 bits (117), Expect = 8e-07
Identities = 22/108 (20%), Positives = 37/108 (34%), Gaps = 4/108 (3%)
Query: 112 EGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAV-QANEVVKANNLTDKVIVLHGRV 170
G V+D+GCG G + +AG Y VD +++++ A + KV
Sbjct: 64 RGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDS 123
Query: 171 EDVEIDEEVDVIISEWMG---YMLLYESMLGSVITARDRWLKRGGLIL 215
+D + + Y L R L+ GG +
Sbjct: 124 YGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFI 171
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 8e-07
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Query: 113 GKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVED 172
G+ ++D+GCGTG L+ AQ+GA V D + A + KA + +
Sbjct: 58 GEFILDLGCGTGQLTEKIAQSGA-EVLGTDNA-----ATMIEKARQNYPHLHFDVADARN 111
Query: 173 VEIDEEVDVIIS 184
+D+ +D + S
Sbjct: 112 FRVDKPLDAVFS 123
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} Length = 260 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 1e-06
Identities = 21/160 (13%), Positives = 45/160 (28%), Gaps = 37/160 (23%)
Query: 113 GKVVVDVGCGTGILSIFCAQ-AGAKRVYAVD----ASDIAVQANEVVKANNLTDKVIVLH 167
+ D+G G G + A V + ++ A ++ E+ + ++ VL
Sbjct: 37 ACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLE 96
Query: 168 GRVEDVEI--------DEEVDVIIS-------------EWMGYMLLYESMLG--SVITAR 204
V DE +I + + + I
Sbjct: 97 ADVTLRAKARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTA 156
Query: 205 DRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYG 244
+ GG ++ ++ P +E I + +G
Sbjct: 157 SAIMVSGG---------QLSLISRPQSVAEIIAACGSRFG 187
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} Length = 281 | Back alignment and structure |
|---|
Score = 48.3 bits (114), Expect = 2e-06
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 104 IMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQAN 151
+ I GK V ++G G G++SI AGA +V A D D + +
Sbjct: 71 LCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNS 118
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 47.7 bits (113), Expect = 2e-06
Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 3/70 (4%)
Query: 116 VVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDVEI 175
++ +GCG LS G V +VD S + V A + ++ V ++
Sbjct: 46 ILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQ--ACYAHVPQLRWETMDVRKLDF 103
Query: 176 -DEEVDVIIS 184
DV++
Sbjct: 104 PSASFDVVLE 113
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} Length = 396 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 3e-06
Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 10/90 (11%)
Query: 101 RAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAV-QANEVVKANNL 159
R A + ++E K V++ TG ++ G +V +VD S A+ A + V+ N L
Sbjct: 212 RLATRR---YVENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKL 268
Query: 160 -TDKVIVLHGRVEDV-----EIDEEVDVII 183
K + V + + E+ DVI+
Sbjct: 269 DLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 48.7 bits (115), Expect = 3e-06
Identities = 73/494 (14%), Positives = 124/494 (25%), Gaps = 149/494 (30%)
Query: 11 HHHHHQPHQQERERMGGGLTSHKDRARRGGRRSRDSLRASEHQQQQQQQQQNDRKPATPC 70
HHHHH H D EHQ Q +
Sbjct: 1 HHHHH----------------HMD------------FETGEHQYQYKDILSVFEDAFV-- 30
Query: 71 TDFDVAYFHSYAHVGIHEEMIKDRVR-----TETYR--AAIMQNQS-----FIEGKVVVD 118
+FD + +E I + + T R ++ Q F+E + ++
Sbjct: 31 DNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN 90
Query: 119 VGCGTGILSIFCAQAGAKRVYAVDASDIAVQANEVVKANNLT--DKVIVLHGRVEDVEID 176
+ Q ++ D N+V N++ + L + E+
Sbjct: 91 YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL--ELR 148
Query: 177 EEVDVIISEWMGYMLLYESMLG---SVITA---RDR-----------WLKRG-----GLI 214
+V+I + +LG + + WL +
Sbjct: 149 PAKNVLI----------DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV 198
Query: 215 LPSYATLYM-------APVTHPDRYSESIDFWRNVYGIDMSAMMPLAKQCAFEEPSVETI 267
L L + H I + + + C +
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA--ELRRLLKSKPYENC--------LL 248
Query: 268 TGENVLTW-PHVVKHVD--CYTI------QIHELESIATTFKFKSMMRAP-------LHG 311
NV + C + Q+ + S ATT +
Sbjct: 249 VLLNV--QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306
Query: 312 FAFWFDVEFST-PAISPANNHIPPVV--VGSS--------NNHPMDGCQKKKRA------ 354
+ D P P + + S +N C K
Sbjct: 307 LLKYLDCRPQDLP--REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN 364
Query: 355 --NPNEA----LVLSTAPEDP--PTH-----WQQTMIYFYDPIEVEQDQLIEGSVVLSQS 401
P E LS P PT W +I D + V ++L + S+V Q
Sbjct: 365 VLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFD-VIK-SDVMVVV-NKLHKYSLVEKQP 421
Query: 402 KENA-RFMNIHLEY 414
KE+ +I+LE
Sbjct: 422 KESTISIPSIYLEL 435
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* Length = 425 | Back alignment and structure |
|---|
Score = 47.9 bits (115), Expect = 3e-06
Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 9/85 (10%)
Query: 100 YRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAV-QANEVVKANN 158
R +EG+ ++D+ G G I+ A+ V D+++ A+ A V+ NN
Sbjct: 282 VRKVS----ELVEGEKILDMYSGVGTFGIYLAKR-GFNVKGFDSNEFAIEMARRNVEINN 336
Query: 159 LTDKVIVLHGRVEDVEIDEEVDVII 183
+ + V +V + + D +I
Sbjct: 337 VDAEFEV--ASDREVSV-KGFDTVI 358
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 6e-06
Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 10/95 (10%)
Query: 93 DRVRTETYR--AAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQA 150
+ R R AI+ + +G V+ D+G GTG S+ A G VYAV+ S + Q
Sbjct: 13 SQTRVPDIRIVNAIINLLNLPKGSVIADIGAGTGGYSVALANQGL-FVYAVEPSIVMRQQ 71
Query: 151 NEVVKANNLTDKVIVLHGRVEDVEI-DEEVDVIIS 184
A V G E++ + D+ VD +IS
Sbjct: 72 -----AVVHPQ-VEWFTGYAENLALPDKSVDGVIS 100
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Length = 950 | Back alignment and structure |
|---|
Score = 47.5 bits (112), Expect = 6e-06
Identities = 17/124 (13%), Positives = 37/124 (29%), Gaps = 10/124 (8%)
Query: 101 RAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQ--AGAKRVYAVDASDIAVQ-ANEVVKAN 157
+++ +VD GCG+G L + + VD S + A +++
Sbjct: 710 VEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVK 769
Query: 158 NLTDK-----VIVLHGRVEDVEI-DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRG 211
+ + G + + + +VD+ + E
Sbjct: 770 LNKEACNVKSATLYDGSILEFDSRLHDVDIGTC-LEVIEHMEEDQACEFGEKVLSLFHPK 828
Query: 212 GLIL 215
LI+
Sbjct: 829 LLIV 832
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 7e-06
Identities = 28/169 (16%), Positives = 59/169 (34%), Gaps = 31/169 (18%)
Query: 76 AYFHSYAHV----------GIHEEMIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGI 125
++ A ++ +I + + V+D+G GTG
Sbjct: 19 EFYDRIARAYDSMYETPKWKLYHRLIGSFLE-----------EYLKNPCRVLDLGGGTGK 67
Query: 126 LSIFCAQAGAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDVEI-DEEVDVIIS 184
S+F + G V VD S + EV + + + V+ + ED+ + +++
Sbjct: 68 WSLFLQERGF-EVVLVDPSKEML---EVAREKGVKN---VVEAKAEDLPFPSGAFEAVLA 120
Query: 185 EWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYS 233
+G +L Y + R L GL++ + Y ++ +
Sbjct: 121 --LGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNFYTFLQQMIEKDA 167
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 46.2 bits (109), Expect = 8e-06
Identities = 15/117 (12%), Positives = 32/117 (27%), Gaps = 6/117 (5%)
Query: 101 RAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQANEVVKANNLT 160
+ + +D G G G ++ ++ + E K
Sbjct: 82 SRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHML---EEAKRELAG 138
Query: 161 DKVI-VLHGRVEDVEI-DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLIL 215
V + +E + D+I+ +W L + + + L G I
Sbjct: 139 MPVGKFILASMETATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQ-QALTPNGYIF 194
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} Length = 178 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 9e-06
Identities = 19/124 (15%), Positives = 44/124 (35%), Gaps = 10/124 (8%)
Query: 101 RAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAK-RVYAVDASDIAVQANEVVKANNL 159
RA + + + + D+G G+G ++I ++ + + S+ + N
Sbjct: 14 RALAISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLG 73
Query: 160 TDKVIVLHGRVEDV--EIDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217
I + ++ + DVI +G L + + L GG ++ +
Sbjct: 74 VSDRIAVQQGAPRAFDDVPDNPDVIF---IGGGLTAPGVFAAAWKR----LPVGGRLVAN 126
Query: 218 YATL 221
T+
Sbjct: 127 AVTV 130
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263 | Back alignment and structure |
|---|
Score = 45.7 bits (108), Expect = 1e-05
Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 11/78 (14%)
Query: 112 EGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS----DIAVQANEVVKANNLTDKVIVLH 167
E V +++G GTG +++ G R A+DA ++ Q K + KV V+
Sbjct: 39 EEPVFLELGVGTGRIALPLIARGY-RYIALDADAAMLEVFRQ-----KIAGVDRKVQVVQ 92
Query: 168 GRVEDVEI-DEEVDVIIS 184
+ + DE V +I
Sbjct: 93 ADARAIPLPDESVHGVIV 110
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* Length = 385 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 1e-05
Identities = 19/90 (21%), Positives = 35/90 (38%), Gaps = 9/90 (10%)
Query: 101 RAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAV-QANEVVKANNL 159
R ++ + GK V+++ T S+ A GA +VD + + + +AN+L
Sbjct: 203 RNELINGSA--AGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHL 260
Query: 160 -TDKVIVLHGRVEDV-----EIDEEVDVII 183
++ V D D+II
Sbjct: 261 DMANHQLVVMDVFDYFKYARRHHLTYDIII 290
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 Length = 177 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 2e-05
Identities = 20/137 (14%), Positives = 46/137 (33%), Gaps = 31/137 (22%)
Query: 92 KDRVRTETYRAAIMQN--QSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQ 149
D+VR + N + G V+D+ G+G L+I G V+ + A
Sbjct: 15 SDKVR-GA-----IFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQA 68
Query: 150 ANEVVKAN----NLTDKVIVLHGRVEDV--EIDEEVDVIISEWMGYM------LLYESML 197
+++ N ++ +L E + D++ ++ + +
Sbjct: 69 ---IIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLV------FLDPPYAKETIVATI 119
Query: 198 GSVITARDRWLKRGGLI 214
++ A L ++
Sbjct: 120 EAL--AAKNLLSEQVMV 134
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* Length = 284 | Back alignment and structure |
|---|
Score = 44.8 bits (107), Expect = 3e-05
Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 116 VVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQ-ANEVVKANNLTDKVIVLHGRVED-- 172
V D+G G+G + + A+ V+A D S AV+ A + + + ++D+ V G +
Sbjct: 127 VADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPF 186
Query: 173 VEIDEEVDVIIS 184
E +++I+S
Sbjct: 187 KEKFASIEMILS 198
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* Length = 249 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 3e-05
Identities = 17/93 (18%), Positives = 33/93 (35%), Gaps = 15/93 (16%)
Query: 102 AAIMQNQSFIEGKVVVDVGCGTG----ILSIFCAQAGAKRVYAVDASD--IAVQANEVVK 155
+++ + V+D+G G G L I + + VDA+ +A ++
Sbjct: 70 LTLLRLPLWQGPLRVLDLGTGAGFPGLPLKIVRPEL---ELVLVDATRKKVAFV-ERAIE 125
Query: 156 ANNLTDKVIVLHGRVEDVEID----EEVDVIIS 184
L L GR E + + E ++
Sbjct: 126 VLGLKG-ARALWGRAEVLAREAGHREAYARAVA 157
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 4e-05
Identities = 16/106 (15%), Positives = 27/106 (25%), Gaps = 18/106 (16%)
Query: 113 GKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVED 172
V++ GCG G + A R A D S ++ A V +
Sbjct: 49 QTRVLEAGCGHGPDAARFGPQAA-RWAAYDFSPELLKL-----ARANAPHADVYEWNGKG 102
Query: 173 V---EIDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLIL 215
+ +I+S G + + L
Sbjct: 103 ELPAGLGAPFGLIVS-RRGPTSVILRLP--------ELAAPDAHFL 139
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} Length = 170 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 6e-05
Identities = 14/74 (18%), Positives = 31/74 (41%), Gaps = 11/74 (14%)
Query: 112 EGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVE 171
E K+V+D+G TG+++ + V + D + A+++ ++ +
Sbjct: 23 EMKIVLDLGTSTGVITEQLRKRN--TVVSTDLNIRALES---------HRGGNLVRADLL 71
Query: 172 DVEIDEEVDVIISE 185
E VDV++
Sbjct: 72 CSINQESVDVVVFN 85
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Length = 235 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 6e-05
Identities = 32/197 (16%), Positives = 53/197 (26%), Gaps = 39/197 (19%)
Query: 112 EGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASD--IAV---QANEVVKANNLTDKVIVL 166
E ++D+GCG+G +S+ A G V +D + I + A K
Sbjct: 30 EDDEILDIGCGSGKISLELASKGY-SVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFK 88
Query: 167 HGRVEDVEI-DEEVDVIISEWMGYML---LYESMLGSVITARDRWLKRGGLIL------- 215
+ D D M L +I R LK G +
Sbjct: 89 VENASSLSFHDSSFDFA---VMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQN 145
Query: 216 --PSYATLY----------MAPVTHPDRYS---ESIDFWRNVYGIDMSAMMPLA--KQCA 258
D + E I ++ ++ +
Sbjct: 146 WHLKLYRKRYLHDFPITKEEGSFLARDPETGETEFIAHHFT--EKELVFLLTDCRFEIDY 203
Query: 259 FEEPSVETITGENVLTW 275
F +ET TG +L +
Sbjct: 204 FRVKELETRTGNKILGF 220
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 Length = 240 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 6e-05
Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 13/92 (14%)
Query: 102 AAIMQNQSFIEGKVVVDVGCGTG----ILSIFCAQAGAKRVYAVDASDIAVQA-NEVVKA 156
F + + DVG G G + I V VD+ + + ++ +A
Sbjct: 60 ITAAFYVDFNQVNTICDVGAGAGFPSLPIKICFPH---LHVTIVDSLNKRITFLEKLSEA 116
Query: 157 NNLTDKVIVLHGRVEDVEIDEEV----DVIIS 184
L + H R E ++V D++ +
Sbjct: 117 LQLEN-TTFCHDRAETFGQRKDVRESYDIVTA 147
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} Length = 204 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 8e-05
Identities = 22/126 (17%), Positives = 47/126 (37%), Gaps = 17/126 (13%)
Query: 101 RAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQANEVVKAN--- 157
RA + + G+++ D+G G+G +S+ AG R ++ + E ++ N
Sbjct: 44 RALTLAALAPRRGELLWDIGGGSGSVSVEWCLAGG-RAITIEPRADRI---ENIQKNIDT 99
Query: 158 -NLTDKVIVLHGRVEDVEID-EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLIL 215
L+ ++ + G D + + + ++ WL G I+
Sbjct: 100 YGLSPRMRAVQGTAPAALADLPLPEAVF--------IGGGGSQALYDRLWEWLAPGTRIV 151
Query: 216 PSYATL 221
+ TL
Sbjct: 152 ANAVTL 157
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} Length = 410 | Back alignment and structure |
|---|
Score = 43.6 bits (102), Expect = 8e-05
Identities = 23/161 (14%), Positives = 48/161 (29%), Gaps = 28/161 (17%)
Query: 100 YRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQANEVVKAN-- 157
Y++ ++ EG VVD+ G GI I + ++ +D + N
Sbjct: 86 YKSRFIR-----EGTKVVDLTGGLGIDFIALMSKA-SQGIYIERNDETA---VAARHNIP 136
Query: 158 ---NLTDKVIVLHGRVEDV---EIDEEVDVIISEWMGY------MLLYESMLGSVITARD 205
N V +L G ++ D I + + +I
Sbjct: 137 LLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYVDPARRSGADKRVYAIADCEPDLIPLAT 196
Query: 206 RWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGID 246
L S ++P+ +S+ + ++ +
Sbjct: 197 ELLPFC-----SSILAKLSPMIDLWDTLQSLLHVQELHVVA 232
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241 | Back alignment and structure |
|---|
Score = 42.7 bits (100), Expect = 8e-05
Identities = 21/161 (13%), Positives = 50/161 (31%), Gaps = 6/161 (3%)
Query: 86 IHEEMIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASD 145
I I + + + + + +D G G G ++ + V VD ++
Sbjct: 55 ISSIDINSSRKF--LQRFLREGPNKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITE 112
Query: 146 IAVQANEVVKANNLTDKVIVLHGRVEDVEIDEE-VDVIISEWMGYMLLYESMLGSVITAR 204
+ + ++D + + DVI +W+ L + + + +
Sbjct: 113 DFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCK 172
Query: 205 DRWLKRGGLILPSYATLYMAPVTHPDRYS--ESIDFWRNVY 243
L+ G+I+ + S +D R +
Sbjct: 173 -GSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRII 212
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* Length = 382 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 9e-05
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
Query: 109 SFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAV-QANEVVKANNLTDKVIVLH 167
G+ +DV G ++ G + V AVD+S A+ +A E + N L V VL
Sbjct: 206 ERFRGERALDVFSYAGGFAL-HLALGFREVVAVDSSAEALRRAEENARLNGL-GNVRVLE 263
Query: 168 GRVEDV-----EIDEEVDVII 183
D+ + E D+++
Sbjct: 264 ANAFDLLRRLEKEGERFDLVV 284
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* Length = 313 | Back alignment and structure |
|---|
Score = 43.0 bits (100), Expect = 1e-04
Identities = 29/216 (13%), Positives = 62/216 (28%), Gaps = 29/216 (13%)
Query: 112 EGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVE 171
V+D+GCG G + + ++ D +D++V+ + + + E
Sbjct: 34 RDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAE 93
Query: 172 DVEID--------------EEVDVIISEW-MGYMLLYESMLGSVITARDRWLKRGGLILP 216
+ D D+ ++ Y ++ L GG +
Sbjct: 94 FITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFI- 152
Query: 217 SYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAMMPLAKQCAFEEPSVETITGENVLTWP 276
T + SE+ F +Y + F++ + G
Sbjct: 153 -GTTPNSFELIRRLEASETESFGNEIYTVK------------FQKKGDYPLFGCKYDFNL 199
Query: 277 HVVKHVDCYTIQIHELESIATTFKFKSMMRAPLHGF 312
V V + + L +A + K + + F
Sbjct: 200 EGVVDVPEFLVYFPLLNEMAKKYNMKLVYKKTFLEF 235
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} Length = 354 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 1e-04
Identities = 34/173 (19%), Positives = 54/173 (31%), Gaps = 36/173 (20%)
Query: 73 FDVAYFHSYAHVGI--HEEMIKDRVRTETYRAAIMQNQSFI--------EGKVVVDVGCG 122
V A +G+ E + R R ++ + G V+D G
Sbjct: 154 VRVDVRGEEAFLGVQLTERPLSRRFPKAALRGSLTPVLAQALLRLADARPGMRVLDPFTG 213
Query: 123 TGILSIFCAQAGAK--RVYAVDASDIAVQ-ANEVVKANNLTDKVIVLHGRVEDVEI-DEE 178
+G +++ A VYA D + + A E A+ L + L + E
Sbjct: 214 SGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGL-SWIRFLRADARHLPRFFPE 272
Query: 179 VDVIIS---------EWMGYMLLYESMLGS------------VITARDRWLKR 210
VD I++ G LY L ++T R LKR
Sbjct: 273 VDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLRPALLKR 325
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* Length = 357 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 1e-04
Identities = 17/88 (19%), Positives = 37/88 (42%), Gaps = 6/88 (6%)
Query: 101 RAAIMQNQSFIEGKVVVDVGCGT-GILSIFCA---QAGAKRVYAVDASDIAVQANEVVKA 156
A ++ + +G G+ G+L++ G + +Y + D ++++
Sbjct: 161 HAYASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEE 220
Query: 157 NNLTDKVIVLHGRVEDV-EIDEEVDVII 183
+ T V VEDV ++ E++D I
Sbjct: 221 LDATY-VDSRQTPVEDVPDVYEQMDFIY 247
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 2e-04
Identities = 16/75 (21%), Positives = 30/75 (40%), Gaps = 6/75 (8%)
Query: 113 GKVVVDVGCGTGILSIFCAQAGAKRVYAVDASD--IAVQANEVVKANNLTDKVIVLHGRV 170
V+D+G G G ++ + VDA+ + V A+ + + + V G
Sbjct: 22 EHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEV-ASSFAQEKGV-ENVRFQQGTA 78
Query: 171 EDVEI-DEEVDVIIS 184
E + D+ D+I
Sbjct: 79 ESLPFPDDSFDIITC 93
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 Length = 332 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 2e-04
Identities = 32/150 (21%), Positives = 50/150 (33%), Gaps = 27/150 (18%)
Query: 51 EHQQQQQQQQQNDRKPATPCTDFDVAY--------FHSYAHVGIHEEMIKDRVRTETYRA 102
+ + K A T + ++ F ++ HVG+ E I +
Sbjct: 91 GDTDEDGMGRWRFPKEALGET-WPLSLLGVEFLGRFTAFRHVGVFPEQIVHWEWLKNAVE 149
Query: 103 AIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQ-ANEVVKANNLTD 161
V+++ TG+ S+ A AGA+ V VDAS A+ A E L
Sbjct: 150 T------ADRPLKVLNLFGYTGVASLVAAAAGAE-VTHVDASKKAIGWAKENQVLAGLEQ 202
Query: 162 KVIVLHGRVEDV------EIDEEV--DVII 183
I ED E D+I+
Sbjct: 203 APIRWI--CEDAMKFIQREERRGSTYDIIL 230
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} Length = 393 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 4e-04
Identities = 17/86 (19%), Positives = 31/86 (36%), Gaps = 8/86 (9%)
Query: 101 RAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAV-QANEVVKANNL 159
R G+ V+DV G ++ A+ GA AVD A+ ++ L
Sbjct: 205 RRLFEAMVR--PGERVLDVYSYVGGFALRAARKGAY-ALAVDKDLEALGVLDQAALRLGL 261
Query: 160 TDKVIVLHGRVEDV--EIDEEVDVII 183
+V + HG ++ ++
Sbjct: 262 --RVDIRHGEALPTLRGLEGPFHHVL 285
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 4e-04
Identities = 24/115 (20%), Positives = 44/115 (38%), Gaps = 18/115 (15%)
Query: 77 YFHSYAHV----GIHEEMIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQ 132
H + H+ IH + A +MQ + + V+DV G G ++ A
Sbjct: 6 IHHHHHHMYVTSQIH--------AKGSDLAKLMQIAALKGNEEVLDVATGGGHVANAFAP 57
Query: 133 AGAKRVYAVDASD--IAVQANEVVKANNLTDKVIVLHGRVEDVEI-DEEVDVIIS 184
+V A D ++ + V A ++ N +V + G E + DE ++
Sbjct: 58 FVK-KVVAFDLTEDILKV-ARAFIEGNGH-QQVEYVQGDAEQMPFTDERFHIVTC 109
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 Length = 187 | Back alignment and structure |
|---|
Score = 40.2 bits (95), Expect = 4e-04
Identities = 17/88 (19%), Positives = 36/88 (40%), Gaps = 15/88 (17%)
Query: 92 KDRVRTETYRAAIMQN--QSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQ 149
D+V+ E+ + N + +G + +D+ G+G L+I G + ++ + A++
Sbjct: 28 TDKVK-ES-----IFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALK 81
Query: 150 ANEVVKAN----NLTDKVIVLHGRVEDV 173
V+K N +K V
Sbjct: 82 ---VIKENIAITKEPEKFEVRKMDANRA 106
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Length = 275 | Back alignment and structure |
|---|
Score = 40.8 bits (95), Expect = 5e-04
Identities = 25/144 (17%), Positives = 49/144 (34%), Gaps = 16/144 (11%)
Query: 85 GIHEEMIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAK--RVYAVD 142
G + R +R AI + G+ ++++GCG G LS A V +D
Sbjct: 16 GPTANARTIQRRQTAHRLAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGID 75
Query: 143 ASDIAV-------QANEVVKANNLTDKVIVLHGRVEDVEI----DEEVDVIISEWMGYML 191
+ QA + A L D++ V ++ D+ D ++ + + L
Sbjct: 76 IASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPIADQHFDRVV---LAHSL 132
Query: 192 LYESMLGSVITARDRWLKRGGLIL 215
Y + ++ +
Sbjct: 133 WYFASANALALLFKNMAAVCDHVD 156
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} Length = 204 | Back alignment and structure |
|---|
Score = 39.9 bits (93), Expect = 5e-04
Identities = 25/123 (20%), Positives = 49/123 (39%), Gaps = 8/123 (6%)
Query: 101 RAAIMQNQSFIEGKVVVDVGCGTGILSIFCA-QAGAKRVYAVDASDIAVQANEVVKANNL 159
RA + + V+ D+G G+ +SI + R++A++ + + +
Sbjct: 29 RAVTLSKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFV 88
Query: 160 TDKVIVLHGRVEDV-EIDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSY 218
V ++ + + + D + G ML +I A DR LK G+I+ +
Sbjct: 89 ARNVTLVEAFAPEGLDDLPDPDRVFIGGSG------GMLEEIIDAVDRRLKSEGVIVLNA 142
Query: 219 ATL 221
TL
Sbjct: 143 VTL 145
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 Length = 254 | Back alignment and structure |
|---|
Score = 40.5 bits (94), Expect = 6e-04
Identities = 14/87 (16%), Positives = 30/87 (34%), Gaps = 9/87 (10%)
Query: 107 NQSFIEGKVVVDVGCGTGILSIFCAQAGAK-RVYAVDASDIAVQ-ANEVVKANNLTDKVI 164
+ + +D+G G + A + D+ A + V+ NNL+D +
Sbjct: 60 DSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIK 119
Query: 165 VLHGRVEDVEID-------EEVDVIIS 184
V+ + + +D D +
Sbjct: 120 VVKVPQKTLLMDALKEESEIIYDFCMC 146
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* Length = 373 | Back alignment and structure |
|---|
Score = 40.6 bits (95), Expect = 6e-04
Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 3/86 (3%)
Query: 102 AAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAK-RVYAVDASDIAVQ-ANEVVKANNL 159
A M + ++G V+D CG+G + I A + ++ + A A +
Sbjct: 207 ANAMIELAELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGV 266
Query: 160 TDKVIVLHGRVEDVEI-DEEVDVIIS 184
DK+ + G + + VD IS
Sbjct: 267 LDKIKFIQGDATQLSQYVDSVDFAIS 292
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} Length = 232 | Back alignment and structure |
|---|
Score = 39.9 bits (94), Expect = 7e-04
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVD 142
I GK +D+G TG + Q GAK VYA+D
Sbjct: 36 INGKTCLDIGSSTGGFTDVMLQNGAKLVYALD 67
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} Length = 291 | Back alignment and structure |
|---|
Score = 40.3 bits (95), Expect = 7e-04
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVD 142
+E + +D+G TG + Q GAK VYAVD
Sbjct: 84 VEDMITIDIGASTGGFTDVMLQNGAKLVYAVD 115
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Length = 298 | Back alignment and structure |
|---|
Score = 40.2 bits (93), Expect = 7e-04
Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
Query: 112 EGKVVVDVGCGT-GILSIFCAQAGAKRVYAVDASDIAVQ-ANEVVKANNLTDKVIVLHGR 169
G+ V +G G + I + RV V+ + + +V++ + D V V+ G
Sbjct: 122 RGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGV-DGVNVITGD 180
Query: 170 VEDVEIDEEVDVII 183
++ E DV++
Sbjct: 181 ETVID-GLEFDVLM 193
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 428 | |||
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 100.0 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 100.0 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 100.0 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 100.0 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 100.0 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 100.0 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 100.0 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 100.0 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 100.0 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.77 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.76 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.75 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.75 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.75 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.73 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.73 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.73 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.71 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.71 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.71 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.71 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.71 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.7 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.7 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.69 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.69 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.69 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.69 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.69 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.68 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.68 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.68 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.68 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.68 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.68 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.67 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.67 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.67 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.67 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.67 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.67 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.66 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.66 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.66 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.65 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.65 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.64 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.64 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.64 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.63 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.63 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.63 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.63 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.62 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.62 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.62 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.62 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.61 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.61 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.61 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.61 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.61 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.6 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.6 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.6 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.6 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.6 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.6 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.6 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.59 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.59 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.59 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.59 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.59 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.59 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.58 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.58 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.57 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.57 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.57 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.57 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.57 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.56 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.56 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.56 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.56 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.56 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.56 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.55 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.55 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.55 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.55 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.55 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.55 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.55 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.55 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.53 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.53 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.53 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.52 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.52 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.52 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.52 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.52 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.52 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.52 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.51 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.51 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.51 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.51 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.51 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.51 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.51 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.5 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.5 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.5 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.5 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.49 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.49 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.49 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.49 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.49 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.49 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.49 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.48 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.47 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.47 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.47 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.47 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.47 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.47 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.47 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.46 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.46 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.46 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.46 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.46 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.46 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.45 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.45 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.45 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.45 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.45 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.44 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.44 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.44 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.44 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.44 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.43 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.43 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.42 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.42 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.42 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.42 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.42 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.42 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.41 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.41 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.41 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.41 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.4 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.4 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.4 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.4 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.39 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.39 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.38 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.38 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.38 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.38 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.38 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.38 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.38 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.38 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.37 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.37 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.37 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.36 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.36 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.36 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.36 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.35 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.35 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.35 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.35 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.34 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.34 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.34 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.33 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.33 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.33 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.33 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.32 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.31 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.31 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.31 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.31 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.3 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.3 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.3 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.3 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.3 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 99.3 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.3 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.3 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.29 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.29 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.28 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.27 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.27 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.27 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.27 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.26 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.25 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 99.25 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.25 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.25 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.25 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 99.25 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.24 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 99.24 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 99.23 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.23 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.23 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 99.23 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.22 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.22 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.22 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 99.22 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.21 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 99.21 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.21 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.21 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 99.2 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.2 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 99.2 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 99.19 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.19 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.18 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.18 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 99.17 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 99.17 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.17 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.16 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 99.15 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.15 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.13 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 99.12 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 99.11 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.11 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 99.1 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 99.1 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 99.03 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 99.02 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 99.01 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 99.01 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 99.01 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 99.0 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 99.0 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 99.0 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.99 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.97 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.96 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.95 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.94 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.87 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 98.82 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.81 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.8 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.77 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.77 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 98.74 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.66 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 98.66 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 98.59 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.51 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.49 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 98.43 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 98.37 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 98.36 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.35 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 98.31 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 98.28 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 98.22 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.19 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 98.19 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 98.19 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 98.1 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.1 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 98.1 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 98.02 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 97.95 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 97.93 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 97.83 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 97.8 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 97.68 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 97.56 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 97.51 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 97.06 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 97.0 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 96.99 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 96.88 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 96.67 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 96.38 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 96.24 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 96.1 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 95.95 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 95.93 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 95.92 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 95.9 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 95.66 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 95.4 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 95.33 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 95.33 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 95.28 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 95.27 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 95.26 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 95.18 | |
| 3iei_A | 334 | Leucine carboxyl methyltransferase 1; LCMT-1, S-ad | 95.06 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 94.94 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 94.78 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 94.7 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 94.66 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 94.63 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 94.58 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 94.53 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 94.33 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 94.32 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 94.29 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 94.16 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 94.05 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 94.0 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 93.95 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 93.94 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 93.86 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 93.83 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 93.82 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 93.76 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 93.75 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 93.61 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 93.52 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 93.49 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 93.48 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 93.46 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 93.34 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 93.22 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 93.11 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 92.86 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 92.74 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 92.67 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 92.66 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 92.6 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 92.6 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 92.58 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 92.55 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 92.35 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 92.33 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 92.26 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 92.16 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 91.87 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 91.58 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 91.44 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 91.41 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 90.68 | |
| 1zsy_A | 357 | Mitochondrial 2-enoyl thioester reductase; medium- | 90.62 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 90.55 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 90.5 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 90.44 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 90.35 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 90.25 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 90.18 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 90.12 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 90.11 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 90.07 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 89.9 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 89.39 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 89.14 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 88.92 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 88.85 | |
| 3me5_A | 482 | Cytosine-specific methyltransferase; structural ge | 88.7 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 88.31 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 88.05 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 87.73 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 87.58 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 87.24 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 87.17 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 86.85 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 86.64 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 86.34 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 86.2 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 86.14 | |
| 1gu7_A | 364 | Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s | 86.0 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 85.85 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 85.36 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 85.24 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 85.15 | |
| 1zkd_A | 387 | DUF185; NESG, RPR58, structural genomics, PSI, pro | 85.06 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 84.54 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 84.44 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 84.43 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 84.29 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 84.29 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 84.27 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 84.14 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 84.04 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 83.67 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 83.64 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 83.61 | |
| 3u5t_A | 267 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 83.28 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 83.2 | |
| 3rku_A | 287 | Oxidoreductase YMR226C; substrate fingerprint, sho | 83.17 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 83.03 | |
| 4f3n_A | 432 | Uncharacterized ACR, COG1565 superfamily; structur | 82.81 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 82.78 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 82.71 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 82.62 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 82.32 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 82.15 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 81.94 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 81.88 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 81.87 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 81.86 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 81.77 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 81.53 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 81.31 | |
| 3swr_A | 1002 | DNA (cytosine-5)-methyltransferase 1; epigenetics, | 81.28 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 81.26 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 81.16 | |
| 4hp8_A | 247 | 2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi | 81.05 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 81.04 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 80.68 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 80.52 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 80.05 |
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-60 Score=466.65 Aligned_cols=327 Identities=45% Similarity=0.798 Sum_probs=284.5
Q ss_pred CCCchhhHHHhhhccchhhhhhccChhhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeChHHHH
Q 014247 69 PCTDFDVAYFHSYAHVGIHEEMIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAV 148 (428)
Q Consensus 69 ~~~~~~~~~f~~y~~~~~~~~~~~d~~r~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s~~~~ 148 (428)
.....+..||++|+++++|+.|++|..|+.+|+++|.++....+|++|||||||+|.+++++|++|+++|+|||.|+++.
T Consensus 40 ~~~~~d~~Yf~sY~~~~iH~~ML~D~~Rt~aY~~Ai~~~~~~~~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~~~~ 119 (376)
T 4hc4_A 40 TKRERDQLYYECYSDVSVHEEMIADRVRTDAYRLGILRNWAALRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASAIWQ 119 (376)
T ss_dssp ---------CCCHHHHHHHHHHHHCHHHHHHHHHHHHTTHHHHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHH
T ss_pred ccccchhhhhhhccCcHHHHHHhCCHHHHHHHHHHHHhCHHhcCCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChHHHH
Confidence 33456778999999999999999999999999999998777789999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCC
Q 014247 149 QANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTH 228 (428)
Q Consensus 149 ~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~ 228 (428)
.|+++++.|++.++|++++++++++.++++||+|||++|++++.++..++.++.++.++|+|||+++|+.+++|++++..
T Consensus 120 ~a~~~~~~n~~~~~i~~i~~~~~~~~lpe~~DvivsE~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~iP~~atly~apie~ 199 (376)
T 4hc4_A 120 QAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVSEWMGYGLLHESMLSSVLHARTKWLKEGGLLLPASAELFIVPISD 199 (376)
T ss_dssp HHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCCBTTBTTTCSHHHHHHHHHHHEEEEEEEESCEEEEEEEEECC
T ss_pred HHHHHHHHcCCCceEEEEeeeeeeecCCccccEEEeecccccccccchhhhHHHHHHhhCCCCceECCccceEEEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ccchhhhhhhhhcc---CCCCcchhHHHHHhc--CCCCceEEeecCCccccCCeeEEEEeCCCCCccccc--ceeeeeEE
Q 014247 229 PDRYSESIDFWRNV---YGIDMSAMMPLAKQC--AFEEPSVETITGENVLTWPHVVKHVDCYTIQIHELE--SIATTFKF 301 (428)
Q Consensus 229 ~~~~~~~~~~~~~~---~~~~~~~l~~~l~~~--Gf~~~~~~~~~~~~~ls~p~~~~~~d~~~~~~~~l~--~~~~~~~~ 301 (428)
... .....+|.++ ||++++.+.....+. .+..+.+..+.+..+++.|+.+..+|+.+.+.++.. .+...+++
T Consensus 200 ~~l-~~~i~~w~~v~~~yGfd~s~~~~~~~~~~~~~~e~~v~~~~~~~~Ls~p~~i~~~D~~~~~~~~~~~~~~~~~f~~ 278 (376)
T 4hc4_A 200 QML-EWRLGFWSQVKQHYGVDMSCLEGFATRCLMGHSEIVVQGLSGEDVLARPQRFAQLELSRAGLEQELEAGVGGRFRC 278 (376)
T ss_dssp HHH-HHHHHGGGGHHHHHSCCCGGGHHHHHHHHHSSCEEEEECCCGGGBCSCCEEEEEEETTCTTHHHHHHHCEEEEEEE
T ss_pred chh-hhhhcchhccccccCcCchhhhhhhhhhhcccCceEEEeecccccccCCEEEEEEECCCCCccccccccceeEEEE
Confidence 543 3456788876 999999998876554 445677788888999999999999999988876432 35678888
Q ss_pred EEeeccceeEEEEEEEeeccCCCCCCCCCCCCCcccCCCCCCCCccccccccCCCCCcEEEecCCCCCCCceeeeEEeeC
Q 014247 302 KSMMRAPLHGFAFWFDVEFSTPAISPANNHIPPVVVGSSNNHPMDGCQKKKRANPNEALVLSTAPEDPPTHWQQTMIYFY 381 (428)
Q Consensus 302 ~~~~~g~~~g~~~wf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSt~P~~~~thW~q~~~~l~ 381 (428)
.+.++|.+|||++||++.|++. .++.++.|||+|..++|||+|++|+|+
T Consensus 279 ~~~~~g~vhg~~~WFd~~f~~~-------------------------------~~~~~v~lST~P~~~~THW~Q~v~~L~ 327 (376)
T 4hc4_A 279 SCYGSAPMHGFAIWFQVTFPGG-------------------------------ESEKPLVLSTSPFHPATHWKQALLYLN 327 (376)
T ss_dssp ECCSSEEEEEEEEEEEEEECCC-------------------------------C--CCEEEECCTTSCCCTTCEEEEEEE
T ss_pred EecCCcEEEEEEEEEEEEecCC-------------------------------CCCCceEEeCCCCcCCCceeeEEEEeC
Confidence 9999999999999999999641 124579999999999999999999999
Q ss_pred CccccCCCCEEEEEEEEEeCCCCCeeEEEEEEEEECCeE-eeeeccc
Q 014247 382 DPIEVEQDQLIEGSVVLSQSKENARFMNIHLEYASGGRS-FVKESVM 427 (428)
Q Consensus 382 ~pi~v~~g~~i~~~~~~~~~~~~~r~~~~~~~~~~~~~~-~~~~~~~ 427 (428)
+|+.|++||+|+|+|+|+++++|+|.|+|+|+|..+++. ...++-|
T Consensus 328 ~Pi~V~~G~~I~g~i~~~~~~~n~R~~~i~i~~~~~~~~~~~~~~~~ 374 (376)
T 4hc4_A 328 EPVQVEQDTDVSGEITLLPSRDNPRRLRVLLRYKVGDQEEKTKDFAM 374 (376)
T ss_dssp EEEEECTTCEEEEEEEEEECSSCTTSEEEEEEEEETTSCCEEEEEEE
T ss_pred CceEeCCCCEEEEEEEEEECCCCCceeEEEEEEEeCCCCcceEEEeC
Confidence 999999999999999999999999999999999987653 2344443
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-51 Score=403.38 Aligned_cols=318 Identities=40% Similarity=0.720 Sum_probs=281.2
Q ss_pred hhhHHHhhhccchhhhhhccChhhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeChHHHHHHHH
Q 014247 73 FDVAYFHSYAHVGIHEEMIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQANE 152 (428)
Q Consensus 73 ~~~~~f~~y~~~~~~~~~~~d~~r~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s~~~~~a~~ 152 (428)
....||+.|+.+.+|+.|++|..|...|.++|.......++++|||||||+|.++..++++|+++|+|+|+|++++.|++
T Consensus 27 ~~~~yf~~y~~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~~l~~a~~ 106 (349)
T 3q7e_A 27 SKDYYFDSYAHFGIHEELLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVK 106 (349)
T ss_dssp ----------CCHHHHHHHHCHHHHHHHHHHHHTCHHHHTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECSTHHHHHHH
T ss_pred hHHHHHHhhhhhHHHHHHhccHHHHHHHHHHHHhccccCCCCEEEEEeccchHHHHHHHHCCCCEEEEECcHHHHHHHHH
Confidence 44679999999999999999999999999999887666789999999999999999999998889999999999999999
Q ss_pred HHHHCCCCCcEEEEEcccccccCC-CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccc
Q 014247 153 VVKANNLTDKVIVLHGRVEDVEID-EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDR 231 (428)
Q Consensus 153 ~~~~~~~~~~v~~~~~d~~~l~~~-~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~ 231 (428)
+++.+++.++++++++|+++++++ ++||+|+++++++.+.++.++..++.++.++|||||++++...+.+..++.....
T Consensus 107 ~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~~~~~~~~~~~~ 186 (349)
T 3q7e_A 107 IVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDRATLYVTAIEDRQY 186 (349)
T ss_dssp HHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEESCEEEEEEEEECCHHH
T ss_pred HHHHcCCCCcEEEEECcHHHccCCCCceEEEEEccccccccCchhHHHHHHHHHHhCCCCCEEccccceEEEeeecChhh
Confidence 999999998999999999998876 8999999999888888889999999999999999999999999999999988877
Q ss_pred hhhhhhhhhccCCCCcchhHHHHHhcCCCCceEEeecCCccccCCeeEEEEeCCCCCcccccceeeeeEEEEeeccceeE
Q 014247 232 YSESIDFWRNVYGIDMSAMMPLAKQCAFEEPSVETITGENVLTWPHVVKHVDCYTIQIHELESIATTFKFKSMMRAPLHG 311 (428)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~~~~~~ls~p~~~~~~d~~~~~~~~l~~~~~~~~~~~~~~g~~~g 311 (428)
......+|.+++|++++.+.+.. +..+.++.+.+..+++.++.+..+|+.+.+.+++. +...++|++.++|.+||
T Consensus 187 ~~~~~~~w~~~~G~d~~~~~~~~----~~~p~v~~~~~~~~~~~~~~~~~~dl~~~~~~~l~-~~~~~~~~~~~~~~~~g 261 (349)
T 3q7e_A 187 KDYKIHWWENVYGFDMSCIKDVA----IKEPLVDVVDPKQLVTNACLIKEVDIYTVKVEDLT-FTSPFCLQVKRNDYVHA 261 (349)
T ss_dssp HHHHTGGGGCBTTBCCGGGHHHH----HTSCEEECCCGGGEEEEEEEEEEEETTTCCGGGGS-EEEEEEEEBCSSEEEEE
T ss_pred hhhhhcccccccCcchHHHhHhh----hcCcEEEEEChhhEecccEEEEEEEcccCchhhcc-eeeeEEEEEccCCEEEE
Confidence 77778899999999999987764 45678888899999999999999999999988885 67899999999999999
Q ss_pred EEEEEEeeccCCCCCCCCCCCCCcccCCCCCCCCccccccccCCCCCcEEEecCCCCCCCceeeeEEeeCCccccCCCCE
Q 014247 312 FAFWFDVEFSTPAISPANNHIPPVVVGSSNNHPMDGCQKKKRANPNEALVLSTAPEDPPTHWQQTMIYFYDPIEVEQDQL 391 (428)
Q Consensus 312 ~~~wf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSt~P~~~~thW~q~~~~l~~pi~v~~g~~ 391 (428)
|++||++.|++ +..++.|||+|..+.|||+|++|+|++|+.|++|++
T Consensus 262 ~~~~Fd~~~~~---------------------------------~~~~v~lst~P~~~~thW~q~~~~l~~p~~v~~g~~ 308 (349)
T 3q7e_A 262 LVAYFNIEFTR---------------------------------CHKRTGFSTSPESPYTHWKQTVFYMEDYLTVKTGEE 308 (349)
T ss_dssp EEEEEEEECTT---------------------------------SSSCCEEECSTTSCCCTTCEEEEEEEEEEEECTTCE
T ss_pred EEEEEEEEecC---------------------------------CCCccEEECCCCcCCCcceeEEEEECCceEeCCCCE
Confidence 99999999973 234799999999999999999999999999999999
Q ss_pred EEEEEEEEeCCCCCeeEEEEEEEEECCeE----eeeecccC
Q 014247 392 IEGSVVLSQSKENARFMNIHLEYASGGRS----FVKESVMR 428 (428)
Q Consensus 392 i~~~~~~~~~~~~~r~~~~~~~~~~~~~~----~~~~~~~~ 428 (428)
|+|+|++++++.|+|.|+|++++..+|+. ....|.||
T Consensus 309 i~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (349)
T 3q7e_A 309 IFGTIGMRPNAKNNRDLDFTIDLDFKGQLCELSCSTDYRMR 349 (349)
T ss_dssp EEEEEEEEECSSCSSCEEEEEEEEEECSSCEEEEEEEEEEC
T ss_pred EEEEEEEEECCCCCeeEEEEEEEEeCCcccccccCceEecC
Confidence 99999999999999999999999987763 23345665
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-51 Score=396.66 Aligned_cols=308 Identities=43% Similarity=0.782 Sum_probs=278.9
Q ss_pred HHHhhhccchhhhhhccChhhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeChHHHHHHHHHHH
Q 014247 76 AYFHSYAHVGIHEEMIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQANEVVK 155 (428)
Q Consensus 76 ~~f~~y~~~~~~~~~~~d~~r~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s~~~~~a~~~~~ 155 (428)
.||+.|++.++|..|++|..|+..|.++|.+.+...++.+|||||||+|.++..++++|+.+|+|+|++++++.|++++.
T Consensus 2 ~Yf~~y~~~~~~~~ml~d~~r~~~y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s~~~~~a~~~~~ 81 (328)
T 1g6q_1 2 YYFDSYDHYGIHEEMLQDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVE 81 (328)
T ss_dssp CCCCCCCCHHHHHHHHTCHHHHHHHHHHHHHHHHHHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESSTHHHHHHHHHH
T ss_pred chhhhhcCchHHHHHhcCHHHHHHHHHHHHhhHhhcCCCEEEEecCccHHHHHHHHHCCCCEEEEEChHHHHHHHHHHHH
Confidence 48999999999999999999999999999877666788999999999999999999998889999999988999999999
Q ss_pred HCCCCCcEEEEEcccccccCC-CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhh
Q 014247 156 ANNLTDKVIVLHGRVEDVEID-EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSE 234 (428)
Q Consensus 156 ~~~~~~~v~~~~~d~~~l~~~-~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~ 234 (428)
.+++.++++++++|+.+++++ ++||+|+++++++.+.++..+..++.++.++|+|||+++|...++++.++........
T Consensus 82 ~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~ 161 (328)
T 1g6q_1 82 LNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFPDKCSIHLAGLEDSQYKDE 161 (328)
T ss_dssp HTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEESCEEEEEEEEECCHHHHHH
T ss_pred HcCCCCCEEEEECchhhccCCCCcccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEEEeeceEEEEEecCchhhhh
Confidence 999988999999999998776 8999999998888888888899999999999999999999999999888887766666
Q ss_pred hhhhhhccCCCCcchhHHHHHhcCCCCceEEeecCCccccCCeeEEEEeCCCCCcccccceeeeeEEEEeeccceeEEEE
Q 014247 235 SIDFWRNVYGIDMSAMMPLAKQCAFEEPSVETITGENVLTWPHVVKHVDCYTIQIHELESIATTFKFKSMMRAPLHGFAF 314 (428)
Q Consensus 235 ~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~~~~~~ls~p~~~~~~d~~~~~~~~l~~~~~~~~~~~~~~g~~~g~~~ 314 (428)
...+|.+.+|++++.+.+++. ..+.+..+.+..+++.|+.+..+|+.+...+++. +...++|.+.++|.+|||++
T Consensus 162 ~~~~w~~~~gf~~~~~~~~~~----~~~~v~~~~~~~~ls~~~~~~~~d~~~~~~~~~~-~~~~~~~~~~~~g~~~g~~~ 236 (328)
T 1g6q_1 162 KLNYWQDVYGFDYSPFVPLVL----HEPIVDTVERNNVNTTSDKLIEFDLNTVKISDLA-FKSNFKLTAKRQDMINGIVT 236 (328)
T ss_dssp HHHHTTCBTTBCCTTHHHHHT----TSCEEECCCGGGBCBCCEEEEEEETTTCCGGGGS-EEEEEEEEBCSSCEEEEEEE
T ss_pred hhcccccccCcChHHHhhhhh----cCCeEEEeccceeecCCEEEEEEECCCCChhHhc-eeeeEEEEEecCcEEEEEEE
Confidence 778899999999999887763 4566778888899999999999999998887774 67889999999999999999
Q ss_pred EEEeeccCCCCCCCCCCCCCcccCCCCCCCCccccccccCCCCCcEEEecCCCCCCCceeeeEEeeCCccccCCCCEEEE
Q 014247 315 WFDVEFSTPAISPANNHIPPVVVGSSNNHPMDGCQKKKRANPNEALVLSTAPEDPPTHWQQTMIYFYDPIEVEQDQLIEG 394 (428)
Q Consensus 315 wf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSt~P~~~~thW~q~~~~l~~pi~v~~g~~i~~ 394 (428)
||+++|+++ .+.+++.+||+|..+.|||+|++|+|++|+.|++|++|+|
T Consensus 237 wfd~~~~~~-------------------------------~~~~~v~lst~P~~~~thW~q~~~~l~~p~~v~~g~~i~~ 285 (328)
T 1g6q_1 237 WFDIVFPAP-------------------------------KGKRPVEFSTGPHAPYTHWKQTIFYFPDDLDAETGDTIEG 285 (328)
T ss_dssp EEEEECCCC-------------------------------TTSCCCEEECSTTSCCCTTCEEEEEEEEEEECCTTCEEEE
T ss_pred EEEEEcCCC-------------------------------CCCCceEEECCCCcCCCcceeEEEEeCCceecCCCCEEEE
Confidence 999999741 1235799999999999999999999999999999999999
Q ss_pred EEEEEeCCCCCeeEEEEEEEEECCe
Q 014247 395 SVVLSQSKENARFMNIHLEYASGGR 419 (428)
Q Consensus 395 ~~~~~~~~~~~r~~~~~~~~~~~~~ 419 (428)
++++++++.|+|.|+|++++..+|.
T Consensus 286 ~~~~~~~~~~~r~~~~~~~~~~~~~ 310 (328)
T 1g6q_1 286 ELVCSPNEKNNRDLNIKISYKFESN 310 (328)
T ss_dssp EEEEEEETTEEEEEEEEEEEEEECC
T ss_pred EEEEEECCCCCceEEEEEEEEecCc
Confidence 9999999999999999999998763
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-50 Score=390.63 Aligned_cols=315 Identities=40% Similarity=0.740 Sum_probs=278.0
Q ss_pred CCchhhHHHhhhccchhhhhhccChhhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeChHHHHH
Q 014247 70 CTDFDVAYFHSYAHVGIHEEMIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQ 149 (428)
Q Consensus 70 ~~~~~~~~f~~y~~~~~~~~~~~d~~r~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s~~~~~ 149 (428)
....+..||+.|...++|..|++|..|+..|.++|.+.+...++.+|||||||+|.++..+++.|+.+|+|+|++++++.
T Consensus 22 ~~~~d~~Y~~~y~~~~~~~~ml~d~~r~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~~~~~ 101 (340)
T 2fyt_A 22 QEDEDGVYFSSYGHYGIHEEMLKDKIRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQ 101 (340)
T ss_dssp --------CCGGGSHHHHHHHHTCHHHHHHHHHHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHH
T ss_pred CccchhhHHHhhcchhHHHHHhcCHHHHHHHHHHHHhhhhhcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHHHHHH
Confidence 34456679999999999999999999999999999998877889999999999999999999998889999999988999
Q ss_pred HHHHHHHCCCCCcEEEEEcccccccCC-CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCC
Q 014247 150 ANEVVKANNLTDKVIVLHGRVEDVEID-EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTH 228 (428)
Q Consensus 150 a~~~~~~~~~~~~v~~~~~d~~~l~~~-~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~ 228 (428)
|+++++.+++.++++++++|+.+++++ ++||+|+++++++.+.++.++..++.++.++|||||+++|...+.++.++..
T Consensus 102 a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~~~~~~ 181 (340)
T 2fyt_A 102 AMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYPDICTISLVAVSD 181 (340)
T ss_dssp HHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEESCEEEEEEEEECC
T ss_pred HHHHHHHcCCCCcEEEEEeeHHHhcCCCCcEEEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEEcccceEEEEEecc
Confidence 999999999988899999999998876 8999999998888888888899999999999999999999999999988887
Q ss_pred ccchhhhhhhhhccCCCCcchhHHHHHhcCCCCceEEeecCCccccCCeeEEEEeCCCCCcccccceeeeeEEEEeeccc
Q 014247 229 PDRYSESIDFWRNVYGIDMSAMMPLAKQCAFEEPSVETITGENVLTWPHVVKHVDCYTIQIHELESIATTFKFKSMMRAP 308 (428)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~~~~~~ls~p~~~~~~d~~~~~~~~l~~~~~~~~~~~~~~g~ 308 (428)
.........+|.+.+|++++.+.+.+ +..+.++.+.+..+++.|..+..+|+.+...+++ .+...+.+.+.++|.
T Consensus 182 ~~~~~~~~~~w~~~~g~~~~~~~~~~----~~~~~v~~~~~~~~ls~p~~~~~~d~~~~~~~~~-~~~~~~~~~~~~~~~ 256 (340)
T 2fyt_A 182 VNKHADRIAFWDDVYGFKMSCMKKAV----IPEAVVEVLDPKTLISEPCGIKHIDCHTTSISDL-EFSSDFTLKITRTSM 256 (340)
T ss_dssp HHHHHHHTGGGGCBTTBCCGGGHHHH----TTBCEEECCCGGGBCBCCEEEEEEETTTCCGGGG-SEEEEEEEEBCSCEE
T ss_pred hhHhhhhhcccccccCcChHHHHHhh----hcCcEEEEechhhcccCCEEEEEEECCCCccccc-ceEeeEEEEEccCcE
Confidence 77767777899999999999887754 5667777778888999999999999999887776 467789999999999
Q ss_pred eeEEEEEEEeeccCCCCCCCCCCCCCcccCCCCCCCCccccccccCCCCCcEEEecCCCCCCCceeeeEEeeCCccccCC
Q 014247 309 LHGFAFWFDVEFSTPAISPANNHIPPVVVGSSNNHPMDGCQKKKRANPNEALVLSTAPEDPPTHWQQTMIYFYDPIEVEQ 388 (428)
Q Consensus 309 ~~g~~~wf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSt~P~~~~thW~q~~~~l~~pi~v~~ 388 (428)
+|||++||++.|+. ++.+++.|||+|..+.|||+|++|+|++|+.|++
T Consensus 257 ~~g~~~wfd~~~~~--------------------------------~~~~~v~lst~P~~~~thW~q~~~~l~~p~~v~~ 304 (340)
T 2fyt_A 257 CTAIAGYFDIYFEK--------------------------------NCHNRVVFSTGPQSTKTHWKQTVFLLEKPFSVKA 304 (340)
T ss_dssp EEEEEEEEEEEECT--------------------------------TCSSCEEEECSTTSCCCTTCEEEEEEEEEEEECT
T ss_pred EEEEEEEEEEEeec--------------------------------CCCCCEEEECCCCcCCCccccEEEEeCCceEcCC
Confidence 99999999999941 2245799999999999999999999999999999
Q ss_pred CCEEEEEEEEEeCCCCCeeEEEEEEEEECCeEe
Q 014247 389 DQLIEGSVVLSQSKENARFMNIHLEYASGGRSF 421 (428)
Q Consensus 389 g~~i~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 421 (428)
|++|+|++++++++.|.|.|+|++++...+|.|
T Consensus 305 g~~i~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 337 (340)
T 2fyt_A 305 GEALKGKVTVHKNKKDPRSLTVTLTLNNSTQTY 337 (340)
T ss_dssp TCEEEEEEEEEECSSCTTSEEEEEEETTEEEEE
T ss_pred CCEEEEEEEEEECCCCCceEEEEEEEEcceEEE
Confidence 999999999999999999999999987544443
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-50 Score=396.90 Aligned_cols=320 Identities=39% Similarity=0.659 Sum_probs=282.7
Q ss_pred hhhHHHhhhccchhhhhhccChhhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeChHHHHHHHH
Q 014247 73 FDVAYFHSYAHVGIHEEMIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQANE 152 (428)
Q Consensus 73 ~~~~~f~~y~~~~~~~~~~~d~~r~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s~~~~~a~~ 152 (428)
....||+.|+....|..|++|..|+..|.++|.......++++|||||||+|.+++.++++|+++|+|+|+|+|++.|++
T Consensus 24 ~~~~yf~~ya~~~~~~~~l~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s~~~~~a~~ 103 (376)
T 3r0q_C 24 DYAQYFCTYSFLYHQKDMLSDRVRMDAYFNAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMADHARA 103 (376)
T ss_dssp ----CTTGGGCHHHHHHHHTCHHHHHHHHHHHHTTTTTTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESSTTHHHHHH
T ss_pred cHHHHHHHHHHhHHHHHHhcChHHHHHHHHHHHhccccCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccHHHHHHHHH
Confidence 44678999999999999999999999999999998888899999999999999999999998889999999999999999
Q ss_pred HHHHCCCCCcEEEEEcccccccCCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccch
Q 014247 153 VVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRY 232 (428)
Q Consensus 153 ~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~ 232 (428)
+++.+++.++++++++|+++++++++||+|+++++++++.++.++..+++++.++|+|||+++++....+..++......
T Consensus 104 ~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~ 183 (376)
T 3r0q_C 104 LVKANNLDHIVEVIEGSVEDISLPEKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSHARMWLAPIKSNIAD 183 (376)
T ss_dssp HHHHTTCTTTEEEEESCGGGCCCSSCEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSEEEEEEEEECCTHHH
T ss_pred HHHHcCCCCeEEEEECchhhcCcCCcceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEecCeEEEEeecchHHh
Confidence 99999999899999999999888899999999998888888888999999999999999999999999999998776443
Q ss_pred hhhh----------hhh---hccCCCCcchhHHHHHhc----CCCCceEEeecCCccccCCeeEEEEeCCCCCcccccce
Q 014247 233 SESI----------DFW---RNVYGIDMSAMMPLAKQC----AFEEPSVETITGENVLTWPHVVKHVDCYTIQIHELESI 295 (428)
Q Consensus 233 ~~~~----------~~~---~~~~~~~~~~l~~~l~~~----Gf~~~~~~~~~~~~~ls~p~~~~~~d~~~~~~~~l~~~ 295 (428)
.... .+| ...+|++++.+.+.+... .+..+.++.+.+..+++.|+.+..+|+.++..+++..+
T Consensus 184 ~~~~~~~~~~~~W~~fw~~~~~~~G~d~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~lt~~~~~~~~d~~~~~~~~l~~~ 263 (376)
T 3r0q_C 184 RKRNDFDGAMADWHNFSDEIKSYYGVDMGVLTKPFAEEQEKYYIQTAMWNDLNPQQIIGTPTIVKEMDCLTASVSEIEEV 263 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTCCCGGGHHHHHHHHHHHHTSBCEEECCCGGGBCBCCEEEEEEETTTCCGGGTSEE
T ss_pred hhhhhhhhhhhhhhhhhhccCccccCChHHHHhhhhhhhhhhcccCceEEEEChHHccCCCeEEEEEEcCcCCHHHhccc
Confidence 3332 678 779999999998874332 45788888899999999999999999999999998878
Q ss_pred eeeeEEEE-eeccceeEEEEEEEeeccCCCCCCCCCCCCCcccCCCCCCCCccccccccCCCCCcEEEecCCC-CCCCce
Q 014247 296 ATTFKFKS-MMRAPLHGFAFWFDVEFSTPAISPANNHIPPVVVGSSNNHPMDGCQKKKRANPNEALVLSTAPE-DPPTHW 373 (428)
Q Consensus 296 ~~~~~~~~-~~~g~~~g~~~wf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSt~P~-~~~thW 373 (428)
...++|.+ .++|.+|||++||+++|++... ......+.|||+|. .+.|||
T Consensus 264 ~~~~~~~~~~~~~~~~g~~~wfd~~~~~~~~----------------------------~~~~~~v~lSt~P~~~~~thW 315 (376)
T 3r0q_C 264 RSNVTSVINMEHTRLCGFGGWFDVQFSGRKE----------------------------DPAQQEIELTTAPSEQHCTHW 315 (376)
T ss_dssp EEEEEEBCSCSCEEEEEEEEEEEEEEEEETT----------------------------EEEEEEEEEECCCCSSCCCTT
T ss_pred ccceEEEEeccCceEEEEEEEEEEEecCCcc----------------------------CCCCCccEEECCCCcCCCCce
Confidence 88999998 8999999999999999974100 00124699999999 468999
Q ss_pred eeeEEeeCCccccCCCCEEEEEEEEEeCCCCCeeEEEEEEEEECCeE
Q 014247 374 QQTMIYFYDPIEVEQDQLIEGSVVLSQSKENARFMNIHLEYASGGRS 420 (428)
Q Consensus 374 ~q~~~~l~~pi~v~~g~~i~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 420 (428)
||++|+|++|+.|++||+|+|+|+|+++++|+|.|+|+|++..+++.
T Consensus 316 ~q~~~~l~~p~~v~~g~~i~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 362 (376)
T 3r0q_C 316 GQQVFIMSNPINVEEGDNLNLGLLMSRSKENHRLMEIELNCEIKEAS 362 (376)
T ss_dssp CEEEEEEEEEEEECTTCEEEEEEEEEECSSCTTSEEEEEEEEEECSS
T ss_pred eeEEEEECCceecCCCCEEEEEEEEEECCCCCeeEEEEEEEEecCcC
Confidence 99999999999999999999999999999999999999999987654
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-45 Score=362.14 Aligned_cols=309 Identities=38% Similarity=0.635 Sum_probs=263.3
Q ss_pred hhhHHHhhhccchhhhhhccChhhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeChHHHHHHHH
Q 014247 73 FDVAYFHSYAHVGIHEEMIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQANE 152 (428)
Q Consensus 73 ~~~~~f~~y~~~~~~~~~~~d~~r~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s~~~~~a~~ 152 (428)
....||+.|..+..|..|++|..|+..|.++|.+.+...++.+|||||||+|.++..++++|+.+|+|+|+|+++..|++
T Consensus 11 ~~~~y~~~y~~~~~~~~ml~d~~r~~~y~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~~~~~a~~ 90 (348)
T 2y1w_A 11 SAVQYFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEV 90 (348)
T ss_dssp HHHHHHHHHTCHHHHHHHHTCHHHHHHHHHHHHHTGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTHHHHHHH
T ss_pred cHHHHHHHHhhhhHHHHHhcchHHHHHHHHHHHhccccCCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHHHHHHHHH
Confidence 34679999999999999999999999999999998887889999999999999999999998889999999988899999
Q ss_pred HHHHCCCCCcEEEEEcccccccCCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccch
Q 014247 153 VVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRY 232 (428)
Q Consensus 153 ~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~ 232 (428)
+++.+++.++++++.+|+++++++++||+|+++.+++.+..+. ....+..+.++|||||+++++.++.+..++.....+
T Consensus 91 ~~~~~~l~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~~~~~~~~-~~~~l~~~~~~LkpgG~li~~~~~~~~~~i~~~~~~ 169 (348)
T 2y1w_A 91 LVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISEPMGYMLFNER-MLESYLHAKKYLKPSGNMFPTIGDVHLAPFTDEQLY 169 (348)
T ss_dssp HHHHTTCTTTEEEEESCTTTCCCSSCEEEEEECCCBTTBTTTS-HHHHHHHGGGGEEEEEEEESCEEEEEEEEECCHHHH
T ss_pred HHHHcCCCCcEEEEEcchhhCCCCCceeEEEEeCchhcCChHH-HHHHHHHHHhhcCCCeEEEEecCcEEEEEecchHHh
Confidence 9999999888999999999988778999999988665554444 556667889999999999999999998888776655
Q ss_pred hh---hhhhhh--ccCCCCcchhHHHHHhcCCCCceEEeecCCccccCCeeEEEEeCCCCCcccccceeeeeEEEEeecc
Q 014247 233 SE---SIDFWR--NVYGIDMSAMMPLAKQCAFEEPSVETITGENVLTWPHVVKHVDCYTIQIHELESIATTFKFKSMMRA 307 (428)
Q Consensus 233 ~~---~~~~~~--~~~~~~~~~l~~~l~~~Gf~~~~~~~~~~~~~ls~p~~~~~~d~~~~~~~~l~~~~~~~~~~~~~~g 307 (428)
.+ ...+|. ..+|++++.+..++.+.+|..+.++..... +...+.....+|+.....+++.++...++|.+.++|
T Consensus 170 ~~~~~~~~~w~~~~~~g~d~~~l~~~~~~~~f~~p~~d~~~~~-~~~~~~~~~~~df~~~~~~~~~~~~~~~~~~~~~~g 248 (348)
T 2y1w_A 170 MEQFTKANFWYQPSFHGVDLSALRGAAVDEYFRQPVVDTFDIR-ILMAKSVKYTVNFLEAKEGDLHRIEIPFKFHMLHSG 248 (348)
T ss_dssp HHHHHHHGGGCCSCBTTBCCGGGHHHHHHHHHTSCEEECCCGG-GBCBCCEEEEEETTTCCGGGGSEEEEEEEEEBSSCE
T ss_pred hhhccccCcccccccCcccHHHhhhHHHhhhccCCeEEeECCe-eecCcceEEEEECCcCChHHhceeeeeEEEEEccCc
Confidence 33 245663 578999999999998899998877755443 334444567789998888888777788999999999
Q ss_pred ceeEEEEEEEeeccCCCCCCCCCCCCCcccCCCCCCCCccccccccCCCCCcEEEecCCCCCCCceeeeEEeeCCccccC
Q 014247 308 PLHGFAFWFDVEFSTPAISPANNHIPPVVVGSSNNHPMDGCQKKKRANPNEALVLSTAPEDPPTHWQQTMIYFYDPIEVE 387 (428)
Q Consensus 308 ~~~g~~~wf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSt~P~~~~thW~q~~~~l~~pi~v~ 387 (428)
.+|||++||+++|++ +..++.|||+|..+.|||+|++|+|++|+.|+
T Consensus 249 ~~~g~~~wfd~~~~~---------------------------------~~~~v~lSt~P~~~~thW~q~~~~l~~p~~v~ 295 (348)
T 2y1w_A 249 LVHGLAFWFDVAFIG---------------------------------SIMTVWLSTAPTEPLTHWYQVRCLFQSPLFAK 295 (348)
T ss_dssp EEEEEEEEEEEEEEC---------------------------------SSCEEEEECCTTSCCCTTCEEEEEEEEEEEEC
T ss_pred EEEEEEEEEEEEEcC---------------------------------CCCceEEECCCCcCCCeeeeEEEeeCCceEeC
Confidence 999999999999974 12478999999989999999999999999999
Q ss_pred CCCEEEEEEEEEeCCCCCeeEEEEEEEEE
Q 014247 388 QDQLIEGSVVLSQSKENARFMNIHLEYAS 416 (428)
Q Consensus 388 ~g~~i~~~~~~~~~~~~~r~~~~~~~~~~ 416 (428)
+||+|+|+|++++++.+.|.+.|++++..
T Consensus 296 ~g~~i~~~~~~~~~~~~~~~~~~~~~~~~ 324 (348)
T 2y1w_A 296 AGDTLSGTCLLIANKRQSYDISIVAQVDQ 324 (348)
T ss_dssp TTCEEEEEEEEEECTTSSEEEEEEEEETT
T ss_pred CCCEEEEEEEEEECCCCCcEEEEEEEEcc
Confidence 99999999999999877666666665543
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-43 Score=363.36 Aligned_cols=282 Identities=21% Similarity=0.266 Sum_probs=243.7
Q ss_pred hhhhhhccChhhHHHHHHHHHhcc--------CCCCCCEEEEEcCCCcHHHHHHHHcCC---C--eEEEEeChHHHHHHH
Q 014247 85 GIHEEMIKDRVRTETYRAAIMQNQ--------SFIEGKVVVDVGCGTGILSIFCAQAGA---K--RVYAVDASDIAVQAN 151 (428)
Q Consensus 85 ~~~~~~~~d~~r~~~~~~~i~~~~--------~~~~~~~VLDiGcGtG~ls~~la~~g~---~--~V~giD~s~~~~~a~ 151 (428)
..|+.+.+|..++..|.++|.+++ ...++.+|||||||+|.|+..++++++ . +|+|||.|+++..|+
T Consensus 322 ~tYevFEkD~vKy~~Ye~AI~~Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A~~a~ 401 (637)
T 4gqb_A 322 QTYEVFEKDPIKYSQYQQAIYKCLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNAVVTL 401 (637)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHHHHHH
T ss_pred hhhhhhcCChhhHHHHHHHHHHHHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHH
Confidence 467888999999999999998754 223456899999999999766666543 3 789999999999999
Q ss_pred HHHHHCCCCCcEEEEEcccccccCCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccc
Q 014247 152 EVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDR 231 (428)
Q Consensus 152 ~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~ 231 (428)
+.++.|++.++|+++++|++++.+++++|+||||+||+++.+|..+ +++.+..++|||||+++|+.+++|++|++....
T Consensus 402 ~~v~~N~~~dkVtVI~gd~eev~LPEKVDIIVSEwMG~fLl~E~ml-evL~Ardr~LKPgGimiPs~atlyiapi~~~~l 480 (637)
T 4gqb_A 402 ENWQFEEWGSQVTVVSSDMREWVAPEKADIIVSELLGSFADNELSP-ECLDGAQHFLKDDGVSIPGEYTSFLAPISSSKL 480 (637)
T ss_dssp HHHHHHTTGGGEEEEESCTTTCCCSSCEEEEECCCCBTTBGGGCHH-HHHHHHGGGEEEEEEEESCEEEEEEEEEECHHH
T ss_pred HHHHhccCCCeEEEEeCcceeccCCcccCEEEEEcCcccccccCCH-HHHHHHHHhcCCCcEEccccceEEEEEecCHHH
Confidence 9999999999999999999999999999999999999999999976 789999999999999999999999999999999
Q ss_pred hhhhhhhhhccCCCCcchhHHHHHhcCCCCceEEeecCCccccCCeeEEEEeCCCCCcccccceeeeeEEEEeeccceeE
Q 014247 232 YSESIDFWRNVYGIDMSAMMPLAKQCAFEEPSVETITGENVLTWPHVVKHVDCYTIQIHELESIATTFKFKSMMRAPLHG 311 (428)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~~~~~~ls~p~~~~~~d~~~~~~~~l~~~~~~~~~~~~~~g~~~g 311 (428)
|.+...+|...++++. .|+.+.+........++.|+.+.+||+.+....+...+...++|++.++|.+||
T Consensus 481 ~~e~~~~~~~~~~~~~----------~~~~p~Vv~~~~~~~Ls~p~~~~~fd~~~~~~~~~~~~~~~~~f~i~~~g~vhG 550 (637)
T 4gqb_A 481 YNEVRACREKDRDPEA----------QFEMPYVVRLHNFHQLSAPQPCFTFSHPNRDPMIDNNRYCTLEFPVEVNTVLHG 550 (637)
T ss_dssp HHHHHTTCCTTSCTTG----------GGGSCEECBCCSCEECSCCEEEEEEESSCCSTTCCCCEEEEEEEECCSCEEEEE
T ss_pred HHHHHhcccccccchh----------hcCCcEEEEecCccccCCCEEEEEEECCCCCccccceEEEEEEEEecCCcEEEE
Confidence 8888888877666543 356677777788889999999999999877665555667889999999999999
Q ss_pred EEEEEEeeccCCCCCCCCCCCCCcccCCCCCCCCccccccccCCCCCcEEEecCCCC---CCCceeeeEEeeCCccccCC
Q 014247 312 FAFWFDVEFSTPAISPANNHIPPVVVGSSNNHPMDGCQKKKRANPNEALVLSTAPED---PPTHWQQTMIYFYDPIEVEQ 388 (428)
Q Consensus 312 ~~~wf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSt~P~~---~~thW~q~~~~l~~pi~v~~ 388 (428)
|++||+++|++ ++.|||+|.. +.|||+|++|+|++|+.|++
T Consensus 551 f~~wFD~~f~~------------------------------------~V~LST~P~~~s~~~THW~Q~vfpL~~Pl~V~~ 594 (637)
T 4gqb_A 551 FAGYFETVLYQ------------------------------------DITLSIRPETHSPGMFSWFPILFPIKQPITVRE 594 (637)
T ss_dssp EEEEEEEEEET------------------------------------TEEEECSGGGCCTTCCSCCCEEEEEEEEEEECT
T ss_pred EEEEEEEEeeC------------------------------------CeEEECCCCCCCCCCCcccCeEEEeCCCeEECC
Confidence 99999999974 6999999963 45999999999999999999
Q ss_pred CCEEEEEEEEEeCCCCCeeEEEEEEE
Q 014247 389 DQLIEGSVVLSQSKENARFMNIHLEY 414 (428)
Q Consensus 389 g~~i~~~~~~~~~~~~~r~~~~~~~~ 414 (428)
||+|+++++++.+. ..-+|++.++-
T Consensus 595 Gd~I~~~~~R~~d~-~kVWYEW~v~~ 619 (637)
T 4gqb_A 595 GQTICVRFWRCSNS-KKVWYEWAVTA 619 (637)
T ss_dssp TCEEEEEEEEEECS-SEEEEEEEEEE
T ss_pred CCEEEEEEEEEeCC-CceeEEEEEeC
Confidence 99999999988753 34567776663
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-42 Score=347.99 Aligned_cols=305 Identities=38% Similarity=0.639 Sum_probs=255.0
Q ss_pred HHHhhhccchhhhhhccChhhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeChHHHHHHHHHHH
Q 014247 76 AYFHSYAHVGIHEEMIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQANEVVK 155 (428)
Q Consensus 76 ~~f~~y~~~~~~~~~~~d~~r~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s~~~~~a~~~~~ 155 (428)
.|++.|.....+..|+.+..+++.|.+++.+.+...++.+|||||||+|.+++.+++.+..+|+|+|+|++++.|++++.
T Consensus 122 ~~~~~y~~~~~~~~~L~d~~~t~~~~~~il~~l~~~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~~l~~A~~~~~ 201 (480)
T 3b3j_A 122 QYFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVK 201 (480)
T ss_dssp EEEEGGGCSCHHHHHHHHHHHHHHHHHHHHHTGGGTTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHHHHHHHHHHHH
T ss_pred hHHHHHhhhccchhhhcChHhHHHHHHHHHHhhhhcCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHHHHHHHHHHHH
Confidence 34555666556888999999999999999988877788999999999999999999988789999999998899999999
Q ss_pred HCCCCCcEEEEEcccccccCCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhh-
Q 014247 156 ANNLTDKVIVLHGRVEDVEIDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSE- 234 (428)
Q Consensus 156 ~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~- 234 (428)
.+++.++++++++|+.+++++++||+|+++.+++.+..+. ....+..+.++|+|||.+++..++.+..++.....+.+
T Consensus 202 ~~gl~~~v~~~~~d~~~~~~~~~fD~Ivs~~~~~~~~~e~-~~~~l~~~~~~LkpgG~li~~~~~~~~~pi~~~~l~~e~ 280 (480)
T 3b3j_A 202 SNNLTDRIVVIPGKVEEVSLPEQVDIIISEPMGYMLFNER-MLESYLHAKKYLKPSGNMFPTIGDVHLAPFTDEQLYMEQ 280 (480)
T ss_dssp HTTCTTTEEEEESCTTTCCCSSCEEEEECCCCHHHHTCHH-HHHHHHHGGGGEEEEEEEESCEEEEEEEEECCHHHHHHH
T ss_pred HcCCCCcEEEEECchhhCccCCCeEEEEEeCchHhcCcHH-HHHHHHHHHHhcCCCCEEEEEeceeeeeccCchHHHHHH
Confidence 9999888999999999987778999999998776666555 44556688899999999999999999888887665532
Q ss_pred --hhhhhh--ccCCCCcchhHHHHHhcCCCCceEEeecCCccccCCeeEEEEeCCCCCcccccceeeeeEEEEeecccee
Q 014247 235 --SIDFWR--NVYGIDMSAMMPLAKQCAFEEPSVETITGENVLTWPHVVKHVDCYTIQIHELESIATTFKFKSMMRAPLH 310 (428)
Q Consensus 235 --~~~~~~--~~~~~~~~~l~~~l~~~Gf~~~~~~~~~~~~~ls~p~~~~~~d~~~~~~~~l~~~~~~~~~~~~~~g~~~ 310 (428)
...+|. ..+|++++.+...+.+.+|..+.++.......... .....+|+.+...+++.++...++|.+.++|.+|
T Consensus 281 ~~~~~~w~~~~~~g~dl~~l~~~~~~~~f~~pvvd~~~~~~~y~~-tl~~~~d~~~~~~~~l~~~~~~~~~~~~~~g~~h 359 (480)
T 3b3j_A 281 FTKANFWYQPSFHGVDLSALRGAAVDEYFRQPVVDTFDIRILMAK-SVKYTVNFLEAKEGDLHRIEIPFKFHMLHSGLVH 359 (480)
T ss_dssp HHHHHHHHSSCBTTBCCGGGHHHHHHHHTTSCEECCCCSTTBCSC-CEEEEEETTTCCTTTTTEEEEEEEEECSSCEEEE
T ss_pred hhccCccccccCCCcChhhhhhHHHHhccCCcEEEEeecccccch-hhhhhhhhhcCChhhhcceeeeEEEEEccCcEEE
Confidence 235664 57899999999888888898877665554443444 3456899998888888777788999999999999
Q ss_pred EEEEEEEeeccCCCCCCCCCCCCCcccCCCCCCCCccccccccCCCCCcEEEecCCCCCCCceeeeEEeeCCccccCCCC
Q 014247 311 GFAFWFDVEFSTPAISPANNHIPPVVVGSSNNHPMDGCQKKKRANPNEALVLSTAPEDPPTHWQQTMIYFYDPIEVEQDQ 390 (428)
Q Consensus 311 g~~~wf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSt~P~~~~thW~q~~~~l~~pi~v~~g~ 390 (428)
||++||+++|++ +..++.|||+|..+.|||+|++|+|++|+.|++||
T Consensus 360 g~~~wFd~~~~~---------------------------------~~~~v~lST~P~~~~thW~q~~~~l~~p~~v~~g~ 406 (480)
T 3b3j_A 360 GLAFWFDVAFIG---------------------------------SIMTVWLSTAPTEPLTHWYQVRCLFQSPLFAKAGD 406 (480)
T ss_dssp EEEEEEEEEEEC---------------------------------SSCEEESSSCCSSSCCCSEEEEEEEEEEEEECTTC
T ss_pred EEEEEEEEEEcC---------------------------------CCCceEEeCCCCcCCCeeeeEEEEeCCceEeCCCC
Confidence 999999999973 12478999999989999999999999999999999
Q ss_pred EEEEEEEEEeCCCCCeeEEEEEEEE
Q 014247 391 LIEGSVVLSQSKENARFMNIHLEYA 415 (428)
Q Consensus 391 ~i~~~~~~~~~~~~~r~~~~~~~~~ 415 (428)
+|+|++.+++++.+.|.+.+++.+.
T Consensus 407 ~i~g~~~~~~~~~~~~~v~~~~~~~ 431 (480)
T 3b3j_A 407 TLSGTCLLIANKRQSYDISIVAQVD 431 (480)
T ss_dssp EEEEEEEEEECTTSSEEEEEEEEET
T ss_pred EEEEEEEEEECCCCCcEEEEEEEEc
Confidence 9999999999987766555555543
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-40 Score=339.11 Aligned_cols=293 Identities=16% Similarity=0.199 Sum_probs=239.7
Q ss_pred chhhhhhccChhhHHHHHHHHHhccCCC-----CCCEEEEEcCCCcHHHHHHHHc----C----------CCeEEEEeCh
Q 014247 84 VGIHEEMIKDRVRTETYRAAIMQNQSFI-----EGKVVVDVGCGTGILSIFCAQA----G----------AKRVYAVDAS 144 (428)
Q Consensus 84 ~~~~~~~~~d~~r~~~~~~~i~~~~~~~-----~~~~VLDiGcGtG~ls~~la~~----g----------~~~V~giD~s 144 (428)
...|+.|++|..|+..|+++|..++... ++++|||||||+|.|+..++++ + +.+|+|||.|
T Consensus 376 s~tYe~fekD~vRy~~Y~~AI~~al~d~~~~~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEkn 455 (745)
T 3ua3_A 376 SGVYNTFEQDQIKYDVYGEAVVGALKDLGADGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKN 455 (745)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECC
T ss_pred hHHHHHHcCChhhHHHHHHHHHHHHHHhhcccCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCC
Confidence 3478999999999999999999885322 2468999999999997654333 2 2399999999
Q ss_pred HHHHHHHHHHHHCCCCCcEEEEEcccccccC------CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccC
Q 014247 145 DIAVQANEVVKANNLTDKVIVLHGRVEDVEI------DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 145 ~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~------~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
+++..+.+....|++.++|+++++|++++.+ ++++|+|||++||+++.++. .+++|..+.++|||||+++|+.
T Consensus 456 p~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~~~~~ekVDIIVSElmGsfl~nEL-~pe~Ld~v~r~Lkp~Gi~iP~~ 534 (745)
T 3ua3_A 456 PNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAKDRGFEQPDIIVSELLGSFGDNEL-SPECLDGVTGFLKPTTISIPQK 534 (745)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHHHTTCCCCSEEEECCCBTTBGGGS-HHHHHHTTGGGSCTTCEEESCE
T ss_pred hHHHHHHHHHHhcCCCCeEEEEeCchhhcccccccCCCCcccEEEEeccccccchhc-cHHHHHHHHHhCCCCcEEECCc
Confidence 6555555555569999999999999999987 68999999999999998886 5668888899999999999999
Q ss_pred CeeeEeecCCccchhhhhhhhhc--cCCCCcch------------h---HHHHHhcCCCCceEEeecCCccccC-CeeEE
Q 014247 219 ATLYMAPVTHPDRYSESIDFWRN--VYGIDMSA------------M---MPLAKQCAFEEPSVETITGENVLTW-PHVVK 280 (428)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~------------l---~~~l~~~Gf~~~~~~~~~~~~~ls~-p~~~~ 280 (428)
++.|++|+..+.+|.+...++.. ++||+... + -.......|+.+.+..+....+++. |+.++
T Consensus 535 ~t~ylaPi~~~~l~~~v~~~~~~~~~~G~p~~g~~~P~~~~~g~~i~~~~~~~~~~a~e~PyVv~l~~~~~Ls~~pq~vf 614 (745)
T 3ua3_A 535 YTSYVKPIMSTHIHQTIKAQSIPYLSRAIPSHGRGEPELDEDEMWIQKYPQGHVRNNMDQIYVVYLSKYIPLAETTKPVF 614 (745)
T ss_dssp EEEEEEEEECHHHHHHHHTCCCCGGGTTSCCSSSCCCEECTTSCEECCCTTCHHHHHHSSCEEECCCSCEESSSSCEEEE
T ss_pred cEEEEEEecCHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccEEEeeccceecCCCCceEE
Confidence 99999999999888776655432 34442100 0 0011334578999999999999999 99999
Q ss_pred EEeCCCCCcccccceeeeeEEEEeeccceeEEEEEEEeeccCCCCCCCCCCCCCcccCCCCCCCCccccccccCCCCCcE
Q 014247 281 HVDCYTIQIHELESIATTFKFKSMMRAPLHGFAFWFDVEFSTPAISPANNHIPPVVVGSSNNHPMDGCQKKKRANPNEAL 360 (428)
Q Consensus 281 ~~d~~~~~~~~l~~~~~~~~~~~~~~g~~~g~~~wf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (428)
+||+.+...++. .+...++|.+.++|.+|||++||++.|++ +|
T Consensus 615 tFdhp~~~~~d~-~r~~~~~F~~~r~g~iHGfagwFDi~Lyk------------------------------------~V 657 (745)
T 3ua3_A 615 TFEHPNFMNSSN-ERSDSIEFVMDRNADLMGFAGYFDLQLYK------------------------------------TV 657 (745)
T ss_dssp EEESSCTTCCCS-CEEEEEEEECCSSEEEEEEEEEEEEEEET------------------------------------TE
T ss_pred EEECCCCCcccc-ceeEEEEEEeCCCcEEEEEEEEEEEEecC------------------------------------Cc
Confidence 999998776555 46889999999999999999999999974 69
Q ss_pred EEecCCCCC---CCceeeeEEeeCCccccCCCCEEEEEEEEEeCCCCCeeEEEEEEEE
Q 014247 361 VLSTAPEDP---PTHWQQTMIYFYDPIEVEQDQLIEGSVVLSQSKENARFMNIHLEYA 415 (428)
Q Consensus 361 ~lSt~P~~~---~thW~q~~~~l~~pi~v~~g~~i~~~~~~~~~~~~~r~~~~~~~~~ 415 (428)
.|||+|... .|||||++|+|++|+.|++||+|+++++...+ +..-+|+..+++.
T Consensus 658 ~LST~P~t~s~~mThWfQtfFPL~ePL~V~~GdeI~g~~~R~~d-~~kVWYEW~v~~~ 714 (745)
T 3ua3_A 658 MLSIEPSTHTPGMVSWFPAVIPLRDQLRVGEGDRISLKIDRKVD-NTGVWYEWHVEKK 714 (745)
T ss_dssp EEECSSTTCCTTCCSCCCEEEEEEEEEEECTTCEEEEEEEEEEE-TTEEEEEEEEEEE
T ss_pred EEecCCCCCCCCCccceeEEEecCCceEeCCCCEEEEEEEEEcC-CCCEEEEEEEEec
Confidence 999999864 58999999999999999999999999999876 3567777777644
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=5.1e-18 Score=159.75 Aligned_cols=161 Identities=20% Similarity=0.315 Sum_probs=125.3
Q ss_pred HHHHHHHhccC-CCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC
Q 014247 99 TYRAAIMQNQS-FIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID 176 (428)
Q Consensus 99 ~~~~~i~~~~~-~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~ 176 (428)
.....+...+. ..++.+|||||||+|.++..+++.+..+|+|+|+| .+++.|++++...++.++++++++|+.+++++
T Consensus 32 ~~~~~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 111 (267)
T 3kkz_A 32 EVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFR 111 (267)
T ss_dssp HHHHHHHTTCCCCCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCC
T ss_pred HHHHHHHHhcccCCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCC
Confidence 33444445544 56789999999999999999999866699999999 99999999999999988899999999998764
Q ss_pred -CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhhccC--CCCcchhHHH
Q 014247 177 -EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVY--GIDMSAMMPL 253 (428)
Q Consensus 177 -~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~ 253 (428)
++||+|++.. .+.+. ++..+++++.++|||||.+++...... ..........+|...+ ..+...+..+
T Consensus 112 ~~~fD~i~~~~---~~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (267)
T 3kkz_A 112 NEELDLIWSEG---AIYNI-GFERGLNEWRKYLKKGGYLAVSECSWF-----TDERPAEINDFWMDAYPEIDTIPNQVAK 182 (267)
T ss_dssp TTCEEEEEESS---CGGGT-CHHHHHHHHGGGEEEEEEEEEEEEEES-----SSCCCHHHHHHHHHHCTTCEEHHHHHHH
T ss_pred CCCEEEEEEcC---Cceec-CHHHHHHHHHHHcCCCCEEEEEEeeec-----CCCChHHHHHHHHHhCCCCCCHHHHHHH
Confidence 8899999976 44444 588999999999999999998765421 1112223344553322 2356788999
Q ss_pred HHhcCCCCceEEeec
Q 014247 254 AKQCAFEEPSVETIT 268 (428)
Q Consensus 254 l~~~Gf~~~~~~~~~ 268 (428)
++++||+.+.+..++
T Consensus 183 l~~aGf~~v~~~~~~ 197 (267)
T 3kkz_A 183 IHKAGYLPVATFILP 197 (267)
T ss_dssp HHHTTEEEEEEEECC
T ss_pred HHHCCCEEEEEEECC
Confidence 999999988777654
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.1e-17 Score=156.20 Aligned_cols=161 Identities=14% Similarity=0.115 Sum_probs=123.4
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCC
Q 014247 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDE 177 (428)
Q Consensus 99 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~ 177 (428)
...+.+...+...++.+|||||||+|.++..+++....+|+|+|+| .+++.|++++...++.++++++++|+.+++.++
T Consensus 23 ~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 102 (256)
T 1nkv_A 23 EKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANE 102 (256)
T ss_dssp HHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSS
T ss_pred HHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCcCC
Confidence 4455666666778899999999999999999998733389999999 999999999999998878999999999987778
Q ss_pred ceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhh---ccCCCCcchhHHHH
Q 014247 178 EVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWR---NVYGIDMSAMMPLA 254 (428)
Q Consensus 178 ~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~l 254 (428)
+||+|++.. .+++..++..+++++.++|||||.+++........ .........|. ....++...+..++
T Consensus 103 ~fD~V~~~~---~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l 174 (256)
T 1nkv_A 103 KCDVAACVG---ATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQL-----PATEEIAQACGVSSTSDFLTLPGLVGAF 174 (256)
T ss_dssp CEEEEEEES---CGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEETTC-----CSSHHHHHTTTCSCGGGSCCHHHHHHHH
T ss_pred CCCEEEECC---ChHhcCCHHHHHHHHHHHcCCCeEEEEecCcccCC-----CChHHHHHHHhcccccccCCHHHHHHHH
Confidence 999999965 45556678999999999999999999865432110 10111111222 11335678899999
Q ss_pred HhcCCCCceEEee
Q 014247 255 KQCAFEEPSVETI 267 (428)
Q Consensus 255 ~~~Gf~~~~~~~~ 267 (428)
+++||+.+.+...
T Consensus 175 ~~aGf~~~~~~~~ 187 (256)
T 1nkv_A 175 DDLGYDVVEMVLA 187 (256)
T ss_dssp HTTTBCCCEEEEC
T ss_pred HHCCCeeEEEEeC
Confidence 9999998876543
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.2e-17 Score=156.05 Aligned_cols=159 Identities=22% Similarity=0.355 Sum_probs=123.3
Q ss_pred HHHHHhcc-CCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC-C
Q 014247 101 RAAIMQNQ-SFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID-E 177 (428)
Q Consensus 101 ~~~i~~~~-~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~-~ 177 (428)
...+...+ ...++.+|||||||+|.++..+++.+..+|+|+|+| .+++.|++++..+++.++++++++|+.+++++ +
T Consensus 34 ~~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 113 (257)
T 3f4k_A 34 TRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNE 113 (257)
T ss_dssp HHHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTT
T ss_pred HHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCC
Confidence 33444444 456788999999999999999999865599999999 99999999999999988899999999988865 8
Q ss_pred ceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhhccC--CCCcchhHHHHH
Q 014247 178 EVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVY--GIDMSAMMPLAK 255 (428)
Q Consensus 178 ~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~l~ 255 (428)
+||+|++.. .+++. ++..+++++.++|+|||++++....... .........+|...+ ..+...+..+++
T Consensus 114 ~fD~v~~~~---~l~~~-~~~~~l~~~~~~L~pgG~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 184 (257)
T 3f4k_A 114 ELDLIWSEG---AIYNI-GFERGMNEWSKYLKKGGFIAVSEASWFT-----SERPAEIEDFWMDAYPEISVIPTCIDKME 184 (257)
T ss_dssp CEEEEEEES---CSCCC-CHHHHHHHHHTTEEEEEEEEEEEEEESS-----SCCCHHHHHHHHHHCTTCCBHHHHHHHHH
T ss_pred CEEEEEecC---hHhhc-CHHHHHHHHHHHcCCCcEEEEEEeeccC-----CCChHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 999999976 45555 5889999999999999999987644221 112223334454422 235778899999
Q ss_pred hcCCCCceEEeec
Q 014247 256 QCAFEEPSVETIT 268 (428)
Q Consensus 256 ~~Gf~~~~~~~~~ 268 (428)
++||+.+....++
T Consensus 185 ~aGf~~v~~~~~~ 197 (257)
T 3f4k_A 185 RAGYTPTAHFILP 197 (257)
T ss_dssp HTTEEEEEEEECC
T ss_pred HCCCeEEEEEECC
Confidence 9999987765443
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.3e-17 Score=156.71 Aligned_cols=107 Identities=21% Similarity=0.314 Sum_probs=90.0
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcC---CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEEe
Q 014247 110 FIEGKVVVDVGCGTGILSIFCAQAG---AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISE 185 (428)
Q Consensus 110 ~~~~~~VLDiGcGtG~ls~~la~~g---~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~ 185 (428)
..++.+|||||||+|.++..+++.. ..+|+|||+| .|++.|++++...+...+|+++++|+.++++ +.||+|++.
T Consensus 68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~-~~~d~v~~~ 146 (261)
T 4gek_A 68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI-ENASMVVLN 146 (261)
T ss_dssp CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCC-CSEEEEEEE
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccc-cccccceee
Confidence 3688999999999999999999862 1289999999 9999999999988888889999999999877 469999997
Q ss_pred cchhhhcchhhHHHHHHHHhcccccCeEEEccC
Q 014247 186 WMGYMLLYESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 186 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
...+.+ ...+...++++++++|||||++++..
T Consensus 147 ~~l~~~-~~~~~~~~l~~i~~~LkpGG~lii~e 178 (261)
T 4gek_A 147 FTLQFL-EPSERQALLDKIYQGLNPGGALVLSE 178 (261)
T ss_dssp SCGGGS-CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eeeeec-CchhHhHHHHHHHHHcCCCcEEEEEe
Confidence 633332 23346789999999999999998754
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.6e-17 Score=156.68 Aligned_cols=166 Identities=20% Similarity=0.205 Sum_probs=127.2
Q ss_pred HHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC
Q 014247 98 ETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID 176 (428)
Q Consensus 98 ~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~ 176 (428)
..+.+.+.+.+...++.+|||||||+|.++..+++....+|+|+|+| .+++.|++++...++.++++++.+|+.+++++
T Consensus 47 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 126 (273)
T 3bus_A 47 DRLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFE 126 (273)
T ss_dssp HHHHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSC
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCC
Confidence 34456666667777899999999999999999998634599999999 99999999999999888899999999998775
Q ss_pred -CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhh-hhhh---hccCCCCcchhH
Q 014247 177 -EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSES-IDFW---RNVYGIDMSAMM 251 (428)
Q Consensus 177 -~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~l~ 251 (428)
++||+|++.. .+.+..+...+++++.++|||||++++....... + ........ ..+| .....++...+.
T Consensus 127 ~~~fD~v~~~~---~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (273)
T 3bus_A 127 DASFDAVWALE---SLHHMPDRGRALREMARVLRPGGTVAIADFVLLA-P--VEGAKKEAVDAFRAGGGVLSLGGIDEYE 200 (273)
T ss_dssp TTCEEEEEEES---CTTTSSCHHHHHHHHHTTEEEEEEEEEEEEEESS-C--CCHHHHHHHHHHHHHHTCCCCCCHHHHH
T ss_pred CCCccEEEEec---hhhhCCCHHHHHHHHHHHcCCCeEEEEEEeeccC-C--CChhHHHHHHHHHhhcCccCCCCHHHHH
Confidence 7899999866 5666777899999999999999999986532210 0 01111111 1111 123446678899
Q ss_pred HHHHhcCCCCceEEeecC
Q 014247 252 PLAKQCAFEEPSVETITG 269 (428)
Q Consensus 252 ~~l~~~Gf~~~~~~~~~~ 269 (428)
.+++++||+...+..+..
T Consensus 201 ~~l~~aGf~~~~~~~~~~ 218 (273)
T 3bus_A 201 SDVRQAELVVTSTVDISA 218 (273)
T ss_dssp HHHHHTTCEEEEEEECHH
T ss_pred HHHHHcCCeEEEEEECcH
Confidence 999999999887776653
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.2e-17 Score=155.87 Aligned_cols=187 Identities=19% Similarity=0.276 Sum_probs=120.0
Q ss_pred chhhHHHhhhccchhhhhhccChhhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHH
Q 014247 72 DFDVAYFHSYAHVGIHEEMIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQA 150 (428)
Q Consensus 72 ~~~~~~f~~y~~~~~~~~~~~d~~r~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a 150 (428)
+.+..||+.|....... ...........+...+...++.+|||||||+|.++..+++.+..+|+|+|++ .+++.|
T Consensus 8 y~~~~~~~~y~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a 83 (253)
T 3g5l_A 8 YDDKHFFEQYSQMPRSK----EGLKAAGEWHELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEA 83 (253)
T ss_dssp ---------------------CHHHHHHHHHHHHTTCCCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHH
T ss_pred cccHHHHHHHHHhhccc----ccccchhhHHHHHHhhhccCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHH
Confidence 44455666665432111 1112223344566666667889999999999999999999987799999999 999998
Q ss_pred HHHHHHCCCCCcEEEEEcccccccCC-CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecC--
Q 014247 151 NEVVKANNLTDKVIVLHGRVEDVEID-EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVT-- 227 (428)
Q Consensus 151 ~~~~~~~~~~~~v~~~~~d~~~l~~~-~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~-- 227 (428)
+++.. ..+++++++|+.+++.+ ++||+|++.. .+++..++..+++++.++|+|||.+++...........
T Consensus 84 ~~~~~----~~~~~~~~~d~~~~~~~~~~fD~v~~~~---~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~ 156 (253)
T 3g5l_A 84 KRKTT----SPVVCYEQKAIEDIAIEPDAYNVVLSSL---ALHYIASFDDICKKVYINLKSSGSFIFSVEHPVFTADGRQ 156 (253)
T ss_dssp HHHCC----CTTEEEEECCGGGCCCCTTCEEEEEEES---CGGGCSCHHHHHHHHHHHEEEEEEEEEEEECHHHHSSSSC
T ss_pred HHhhc----cCCeEEEEcchhhCCCCCCCeEEEEEch---hhhhhhhHHHHHHHHHHHcCCCcEEEEEeCCCccccCccc
Confidence 88754 34699999999998874 8999999976 56666789999999999999999999863321100000
Q ss_pred -------Ccc-------chhh--hhhhhh----ccCCCCcchhHHHHHhcCCCCceEEeecC
Q 014247 228 -------HPD-------RYSE--SIDFWR----NVYGIDMSAMMPLAKQCAFEEPSVETITG 269 (428)
Q Consensus 228 -------~~~-------~~~~--~~~~~~----~~~~~~~~~l~~~l~~~Gf~~~~~~~~~~ 269 (428)
... .+.. ....|. ..+..+.+.+..+++++||+...+....+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~l~~aGF~~~~~~e~~~ 218 (253)
T 3g5l_A 157 DWYTDETGNKLHWPVDRYFNESMRTSHFLGEDVQKYHRTVTTYIQTLLKNGFQINSVIEPEP 218 (253)
T ss_dssp SCEECSSCCEEEEEECCTTCCCEEEEEETTEEEEEECCCHHHHHHHHHHTTEEEEEEECCCC
T ss_pred cceeccCCceEEEEeccccccceEEEeeccccCccEecCHHHHHHHHHHcCCeeeeeecCCC
Confidence 000 0000 000000 01223778899999999999877765543
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=3.7e-17 Score=157.61 Aligned_cols=160 Identities=18% Similarity=0.165 Sum_probs=122.9
Q ss_pred HHHHhccC-CCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC-C
Q 014247 102 AAIMQNQS-FIEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID-E 177 (428)
Q Consensus 102 ~~i~~~~~-~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~-~ 177 (428)
+.+.+.+. ..++.+|||||||+|.++..+++. +. +|+|+|++ .+++.|++++..+++.++++++.+|+.+++++ +
T Consensus 106 ~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 184 (312)
T 3vc1_A 106 EFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRFGS-RVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKG 184 (312)
T ss_dssp HHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTT
T ss_pred HHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCCC
Confidence 44566665 678899999999999999999997 65 89999999 99999999999999988899999999998765 8
Q ss_pred ceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhhc---cCCCCcchhHHHH
Q 014247 178 EVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRN---VYGIDMSAMMPLA 254 (428)
Q Consensus 178 ~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~l 254 (428)
+||+|++.. ++++. ++..+++++.++|||||++++....... . .........++.. ...++...+..++
T Consensus 185 ~fD~V~~~~---~l~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~s~~~~~~~l 256 (312)
T 3vc1_A 185 AVTASWNNE---STMYV-DLHDLFSEHSRFLKVGGRYVTITGCWNP--R--YGQPSKWVSQINAHFECNIHSRREYLRAM 256 (312)
T ss_dssp CEEEEEEES---CGGGS-CHHHHHHHHHHHEEEEEEEEEEEEEECT--T--TCSCCHHHHHHHHHHTCCCCBHHHHHHHH
T ss_pred CEeEEEECC---chhhC-CHHHHHHHHHHHcCCCcEEEEEEccccc--c--ccchhHHHHHHHhhhcCCCCCHHHHHHHH
Confidence 999999966 44455 3999999999999999999975432211 0 0011111111111 1345678899999
Q ss_pred HhcCCCCceEEeecCC
Q 014247 255 KQCAFEEPSVETITGE 270 (428)
Q Consensus 255 ~~~Gf~~~~~~~~~~~ 270 (428)
+++||+...++.+...
T Consensus 257 ~~aGf~~~~~~~~~~~ 272 (312)
T 3vc1_A 257 ADNRLVPHTIVDLTPD 272 (312)
T ss_dssp HTTTEEEEEEEECHHH
T ss_pred HHCCCEEEEEEeCCHH
Confidence 9999998888877643
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.73 E-value=6.8e-17 Score=154.39 Aligned_cols=163 Identities=15% Similarity=0.109 Sum_probs=122.7
Q ss_pred HHHHHHhcc----CCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccc
Q 014247 100 YRAAIMQNQ----SFIEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDV 173 (428)
Q Consensus 100 ~~~~i~~~~----~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l 173 (428)
..+.+...+ ...++.+|||||||+|.++..+++. +. +|+|+|+| .+++.|++++...++.++++++++|+.++
T Consensus 66 ~~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 144 (297)
T 2o57_A 66 TDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGV-SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEI 144 (297)
T ss_dssp HHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSC
T ss_pred HHHHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccC
Confidence 334455555 6678899999999999999999987 66 99999999 99999999998888888899999999998
Q ss_pred cCC-CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhhccCCCCcchhHH
Q 014247 174 EID-EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAMMP 252 (428)
Q Consensus 174 ~~~-~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 252 (428)
+++ ++||+|++.. .+++..++..+++++.++|||||++++....... .............+......+...+..
T Consensus 145 ~~~~~~fD~v~~~~---~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (297)
T 2o57_A 145 PCEDNSYDFIWSQD---AFLHSPDKLKVFQECARVLKPRGVMAITDPMKED--GIDKSSIQPILDRIKLHDMGSLGLYRS 219 (297)
T ss_dssp SSCTTCEEEEEEES---CGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEECT--TCCGGGGHHHHHHHTCSSCCCHHHHHH
T ss_pred CCCCCCEeEEEecc---hhhhcCCHHHHHHHHHHHcCCCeEEEEEEeccCC--CCchHHHHHHHHHhcCCCCCCHHHHHH
Confidence 875 7899999865 5666677899999999999999999986542210 001111111111111112346778899
Q ss_pred HHHhcCCCCceEEeec
Q 014247 253 LAKQCAFEEPSVETIT 268 (428)
Q Consensus 253 ~l~~~Gf~~~~~~~~~ 268 (428)
+++++||+.+.+..+.
T Consensus 220 ~l~~aGf~~~~~~~~~ 235 (297)
T 2o57_A 220 LAKECGLVTLRTFSRP 235 (297)
T ss_dssp HHHHTTEEEEEEEECH
T ss_pred HHHHCCCeEEEEEECc
Confidence 9999999987776543
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.3e-16 Score=144.77 Aligned_cols=159 Identities=19% Similarity=0.277 Sum_probs=119.6
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC-
Q 014247 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID- 176 (428)
Q Consensus 99 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~- 176 (428)
.+.+.+.+.+...++ +|||||||+|.++..+++....+|+|+|++ .+++.|++++...++.++++++++|+.+++++
T Consensus 31 ~~~~~~~~~~~~~~~-~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 109 (219)
T 3dlc_A 31 IIAENIINRFGITAG-TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIED 109 (219)
T ss_dssp HHHHHHHHHHCCCEE-EEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCT
T ss_pred HHHHHHHHhcCCCCC-EEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCc
Confidence 445555555554555 999999999999999999733499999999 99999999999999888899999999998765
Q ss_pred CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchh-------hhhhhhh-----ccCC
Q 014247 177 EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYS-------ESIDFWR-----NVYG 244 (428)
Q Consensus 177 ~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~-------~~~~~~~-----~~~~ 244 (428)
++||+|++.. .+++..++..+++++.++|+|||.+++.... ....... .....|. ....
T Consensus 110 ~~~D~v~~~~---~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (219)
T 3dlc_A 110 NYADLIVSRG---SVFFWEDVATAFREIYRILKSGGKTYIGGGF------GNKELRDSISAEMIRKNPDWKEFNRKNISQ 180 (219)
T ss_dssp TCEEEEEEES---CGGGCSCHHHHHHHHHHHEEEEEEEEEEECC------SSHHHHHHHHHHHHHHCTTHHHHHHHHSSH
T ss_pred ccccEEEECc---hHhhccCHHHHHHHHHHhCCCCCEEEEEecc------CcHHHHHHHHHHHHHhHHHHHhhhhhcccc
Confidence 8899999976 5566677899999999999999999875321 1111100 0001121 1223
Q ss_pred CCcchhHHHHHhcCCCCceEEee
Q 014247 245 IDMSAMMPLAKQCAFEEPSVETI 267 (428)
Q Consensus 245 ~~~~~l~~~l~~~Gf~~~~~~~~ 267 (428)
++.+.+..+++++||+.+.+...
T Consensus 181 ~~~~~~~~~l~~aGf~~v~~~~~ 203 (219)
T 3dlc_A 181 ENVERFQNVLDEIGISSYEIILG 203 (219)
T ss_dssp HHHHHHHHHHHHHTCSSEEEEEE
T ss_pred CCHHHHHHHHHHcCCCeEEEEec
Confidence 35678999999999998776543
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.2e-16 Score=149.74 Aligned_cols=154 Identities=21% Similarity=0.266 Sum_probs=116.5
Q ss_pred HHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC-CceeE
Q 014247 104 IMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID-EEVDV 181 (428)
Q Consensus 104 i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~-~~~Dl 181 (428)
+.+.+...++.+|||||||+|.++..+++.+. +|+|+|+| .+++.|++++...++. ++.++.+|+.+++++ ++||+
T Consensus 29 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~l~~~~~~fD~ 106 (260)
T 1vl5_A 29 LMQIAALKGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGHQ-QVEYVQGDAEQMPFTDERFHI 106 (260)
T ss_dssp HHHHHTCCSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCC-CCCSCTTCEEE
T ss_pred HHHHhCCCCCCEEEEEeCCCCHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEecHHhCCCCCCCEEE
Confidence 33444556889999999999999999999865 99999999 9999999999888876 599999999998875 89999
Q ss_pred EEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchh---hhhhhhh---ccCCCCcchhHHHHH
Q 014247 182 IISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYS---ESIDFWR---NVYGIDMSAMMPLAK 255 (428)
Q Consensus 182 Vvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~---~~~~~~~---~~~~~~~~~l~~~l~ 255 (428)
|++.. .+++..++..+++++.++|||||.+++..... + . ..... .....+. ....++...+..+++
T Consensus 107 V~~~~---~l~~~~d~~~~l~~~~r~LkpgG~l~~~~~~~---~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 178 (260)
T 1vl5_A 107 VTCRI---AAHHFPNPASFVSEAYRVLKKGGQLLLVDNSA---P-E-NDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLE 178 (260)
T ss_dssp EEEES---CGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEB---C-S-SHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHH
T ss_pred EEEhh---hhHhcCCHHHHHHHHHHHcCCCCEEEEEEcCC---C-C-CHHHHHHHHHHHHhcCccccCCCCHHHHHHHHH
Confidence 99976 56677789999999999999999998753211 1 0 11111 1001011 123456788999999
Q ss_pred hcCCCCceEEee
Q 014247 256 QCAFEEPSVETI 267 (428)
Q Consensus 256 ~~Gf~~~~~~~~ 267 (428)
++||+...+...
T Consensus 179 ~aGf~~~~~~~~ 190 (260)
T 1vl5_A 179 EAGFELEELHCF 190 (260)
T ss_dssp HHTCEEEEEEEE
T ss_pred HCCCeEEEEEEe
Confidence 999997766654
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=8.8e-17 Score=154.17 Aligned_cols=160 Identities=16% Similarity=0.140 Sum_probs=121.9
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCC
Q 014247 100 YRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDE 177 (428)
Q Consensus 100 ~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~ 177 (428)
..+.+.+.+...++.+|||||||+|.++..+++. | .+|+|+|+| .+++.|++++...++.++++++.+|+.++ ++
T Consensus 60 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~ 136 (302)
T 3hem_A 60 KRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF--DE 136 (302)
T ss_dssp HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC--CC
T ss_pred HHHHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc--CC
Confidence 3445566666788999999999999999999998 7 489999999 99999999999999988899999999987 68
Q ss_pred ceeEEEEecchhhhcch---------hhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhh-----------hh
Q 014247 178 EVDVIISEWMGYMLLYE---------SMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSES-----------ID 237 (428)
Q Consensus 178 ~~DlVvs~~~~~~l~~~---------~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~-----------~~ 237 (428)
+||+|++.. ++++. .....+++++.++|||||++++...... ........ ..
T Consensus 137 ~fD~v~~~~---~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 208 (302)
T 3hem_A 137 PVDRIVSLG---AFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIP-----DKEEAQELGLTSPMSLLRFIK 208 (302)
T ss_dssp CCSEEEEES---CGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECC-----CHHHHHHHTCCCCHHHHHHHH
T ss_pred CccEEEEcc---hHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEecc-----CccchhhccccccccccchHH
Confidence 999999976 34333 4568999999999999999997643221 00000000 01
Q ss_pred h-----hhccCCCCcchhHHHHHhcCCCCceEEeecCC
Q 014247 238 F-----WRNVYGIDMSAMMPLAKQCAFEEPSVETITGE 270 (428)
Q Consensus 238 ~-----~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~~~~ 270 (428)
+ +...+..+.+.+..+++++||+...++.+...
T Consensus 209 ~~~~~~~p~~~~~s~~~~~~~l~~aGf~~~~~~~~~~~ 246 (302)
T 3hem_A 209 FILTEIFPGGRLPRISQVDYYSSNAGWKVERYHRIGAN 246 (302)
T ss_dssp HHHHHTCTTCCCCCHHHHHHHHHHHTCEEEEEEECGGG
T ss_pred HHHHhcCCCCCCCCHHHHHHHHHhCCcEEEEEEeCchh
Confidence 1 11123345778999999999998888776654
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.71 E-value=4.4e-17 Score=154.83 Aligned_cols=154 Identities=18% Similarity=0.225 Sum_probs=115.5
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc--CCCceeEEEEecc
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE--IDEEVDVIISEWM 187 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~--~~~~~DlVvs~~~ 187 (428)
.++.+|||||||+|.++..+++.|. +|+|+|++ .+++.|++++...++..+++++++|+.+++ .+++||+|++..
T Consensus 67 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~- 144 (285)
T 4htf_A 67 PQKLRVLDAGGGEGQTAIKMAERGH-QVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHA- 144 (285)
T ss_dssp SSCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEES-
T ss_pred CCCCEEEEeCCcchHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECc-
Confidence 3468999999999999999999966 89999999 999999999998888778999999999987 358999999976
Q ss_pred hhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCC--ccchhhhh--------hhhhccCCCCcchhHHHHHhc
Q 014247 188 GYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTH--PDRYSESI--------DFWRNVYGIDMSAMMPLAKQC 257 (428)
Q Consensus 188 ~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~--~~~~~~~~--------~~~~~~~~~~~~~l~~~l~~~ 257 (428)
++.+..++..+++++.++|||||.+++...+........ ...+.... ........++...+..+++++
T Consensus 145 --~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~a 222 (285)
T 4htf_A 145 --VLEWVADPRSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNMVAGNFDYVQAGMPKKKKRTLSPDYPRDPTQVYLWLEEA 222 (285)
T ss_dssp --CGGGCSCHHHHHHHHHHTEEEEEEEEEEEEBHHHHHHHHHHTTCHHHHHTTCCCC----CCCSCCBCHHHHHHHHHHT
T ss_pred --hhhcccCHHHHHHHHHHHcCCCeEEEEEEeCCchHHHHHHHhcCHHHHhhhccccccccCCCCCCCCHHHHHHHHHHC
Confidence 666667889999999999999999987643221000000 00000000 001112456778999999999
Q ss_pred CCCCceEEeec
Q 014247 258 AFEEPSVETIT 268 (428)
Q Consensus 258 Gf~~~~~~~~~ 268 (428)
||+...+..+.
T Consensus 223 Gf~v~~~~~~~ 233 (285)
T 4htf_A 223 GWQIMGKTGVR 233 (285)
T ss_dssp TCEEEEEEEES
T ss_pred CCceeeeeeEE
Confidence 99988777654
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.71 E-value=4.1e-17 Score=151.07 Aligned_cols=148 Identities=15% Similarity=0.184 Sum_probs=109.5
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEEecchh
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWMGY 189 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~~~~~ 189 (428)
.++.+|||||||+|.++..+++.+. +|+|+|+| .+++.|+++... +++++++|+.++..+++||+|++..
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~-----~v~~~~~d~~~~~~~~~fD~v~~~~--- 111 (250)
T 2p7i_A 41 FRPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLKD-----GITYIHSRFEDAQLPRRYDNIVLTH--- 111 (250)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSCS-----CEEEEESCGGGCCCSSCEEEEEEES---
T ss_pred cCCCcEEEECCCCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhhhC-----CeEEEEccHHHcCcCCcccEEEEhh---
Confidence 5678999999999999999999876 89999999 999998877432 5999999999885568999999866
Q ss_pred hhcchhhHHHHHHHHh-cccccCeEEEccCCeeeEee--------c-CCccchhhhhhhhhccCCCCcchhHHHHHhcCC
Q 014247 190 MLLYESMLGSVITARD-RWLKRGGLILPSYATLYMAP--------V-THPDRYSESIDFWRNVYGIDMSAMMPLAKQCAF 259 (428)
Q Consensus 190 ~l~~~~~~~~~l~~~~-~~LkpgG~lv~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf 259 (428)
++++..++..+++++. ++|||||.+++..++..... . .....+............++...+..+++++||
T Consensus 112 ~l~~~~~~~~~l~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf 191 (250)
T 2p7i_A 112 VLEHIDDPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGL 191 (250)
T ss_dssp CGGGCSSHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTC
T ss_pred HHHhhcCHHHHHHHHHHHhcCCCCEEEEEcCChHHHHHHHHHHcCccccchhcccccccccccccCCHHHHHHHHHHCCC
Confidence 6777778899999999 99999999997643211000 0 000000000001112345678899999999999
Q ss_pred CCceEEee
Q 014247 260 EEPSVETI 267 (428)
Q Consensus 260 ~~~~~~~~ 267 (428)
+...+..+
T Consensus 192 ~~~~~~~~ 199 (250)
T 2p7i_A 192 QVTYRSGI 199 (250)
T ss_dssp EEEEEEEE
T ss_pred eEEEEeee
Confidence 98776643
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.70 E-value=8.3e-17 Score=146.60 Aligned_cols=156 Identities=13% Similarity=0.158 Sum_probs=107.8
Q ss_pred HHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEeCh-HHHHHHHHHHHHCCCCC----cEEEEEcccccccC
Q 014247 102 AAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAG-AKRVYAVDAS-DIAVQANEVVKANNLTD----KVIVLHGRVEDVEI 175 (428)
Q Consensus 102 ~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g-~~~V~giD~s-~~~~~a~~~~~~~~~~~----~v~~~~~d~~~l~~ 175 (428)
+.+.+.+...++.+|||||||+|.++..+++.+ ..+|+|+|++ .+++.|++++..+++.+ +++++++|+...+.
T Consensus 19 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 98 (217)
T 3jwh_A 19 NGVVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDK 98 (217)
T ss_dssp HHHHHHHHHTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCG
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccc
Confidence 344444444677899999999999999999974 3599999999 99999999988777764 79999999876655
Q ss_pred C-CceeEEEEecchhhhcchh--hHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhhccCCCCcchhH-
Q 014247 176 D-EEVDVIISEWMGYMLLYES--MLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAMM- 251 (428)
Q Consensus 176 ~-~~~DlVvs~~~~~~l~~~~--~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~- 251 (428)
. ++||+|++.. .+.+.. +...+++++.++|||||+++......+...+.. ............+.+...++.
T Consensus 99 ~~~~fD~v~~~~---~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~ 173 (217)
T 3jwh_A 99 RFHGYDAATVIE---VIEHLDLSRLGAFERVLFEFAQPKIVIVTTPNIEYNVKFAN--LPAGKLRHKDHRFEWTRSQFQN 173 (217)
T ss_dssp GGCSCSEEEEES---CGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBHHHHHHTC-------------CCSCBCHHHHHH
T ss_pred cCCCcCEEeeHH---HHHcCCHHHHHHHHHHHHHHcCCCEEEEEccCcccchhhcc--cccccccccccccccCHHHHHH
Confidence 4 7899999876 444444 458999999999999997775432211100000 000000111223456777777
Q ss_pred ---HHHHhcCCCCc
Q 014247 252 ---PLAKQCAFEEP 262 (428)
Q Consensus 252 ---~~l~~~Gf~~~ 262 (428)
.+++++||+..
T Consensus 174 ~~~~~~~~~Gf~v~ 187 (217)
T 3jwh_A 174 WANKITERFAYNVQ 187 (217)
T ss_dssp HHHHHHHHSSEEEE
T ss_pred HHHHHHHHcCceEE
Confidence 77788998653
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.70 E-value=2.3e-16 Score=143.74 Aligned_cols=155 Identities=12% Similarity=0.190 Sum_probs=107.4
Q ss_pred HHhccCCCCCCEEEEEcCCCcHHHHHHHHcCC-CeEEEEeCh-HHHHHHHHHHHHCCCCC----cEEEEEcccccccCC-
Q 014247 104 IMQNQSFIEGKVVVDVGCGTGILSIFCAQAGA-KRVYAVDAS-DIAVQANEVVKANNLTD----KVIVLHGRVEDVEID- 176 (428)
Q Consensus 104 i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~-~~V~giD~s-~~~~~a~~~~~~~~~~~----~v~~~~~d~~~l~~~- 176 (428)
+.+.+...++.+|||||||+|.++..+++.+. .+|+|+|+| .+++.|++++..+++.+ +++++++|+...+..
T Consensus 21 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 100 (219)
T 3jwg_A 21 VVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRF 100 (219)
T ss_dssp HHHHHHHTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGG
T ss_pred HHHHHhhcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCccccccccc
Confidence 33333335778999999999999999999753 599999999 99999999988777654 799999999776653
Q ss_pred CceeEEEEecchhhhcchh--hHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhhccCCCCcchhH---
Q 014247 177 EEVDVIISEWMGYMLLYES--MLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAMM--- 251 (428)
Q Consensus 177 ~~~DlVvs~~~~~~l~~~~--~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--- 251 (428)
++||+|++.. ++.+.. +...+++++.++|||||.++......+..... .............+.+...++.
T Consensus 101 ~~fD~V~~~~---~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~ 175 (219)
T 3jwg_A 101 SGYDAATVIE---VIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNKEYNFHYG--NLFEGNLRHRDHRFEWTRKEFQTWA 175 (219)
T ss_dssp TTCSEEEEES---CGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBGGGGGCCC--CT-----GGGCCTTSBCHHHHHHHH
T ss_pred CCCCEEEEHH---HHHhCCHHHHHHHHHHHHHhhCCCEEEEEccchhhhhhhc--ccCcccccccCceeeecHHHHHHHH
Confidence 7899999876 444444 45799999999999999776432211110000 0000011112233456777777
Q ss_pred -HHHHhcCCCCce
Q 014247 252 -PLAKQCAFEEPS 263 (428)
Q Consensus 252 -~~l~~~Gf~~~~ 263 (428)
.+++++||+...
T Consensus 176 ~~l~~~~Gf~v~~ 188 (219)
T 3jwg_A 176 VKVAEKYGYSVRF 188 (219)
T ss_dssp HHHHHHHTEEEEE
T ss_pred HHHHHHCCcEEEE
Confidence 677888996543
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.5e-16 Score=144.91 Aligned_cols=151 Identities=17% Similarity=0.139 Sum_probs=117.2
Q ss_pred HHHhccCCCCCCEEEEEcCCCcHHHHHHHHcC--CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC-Cc
Q 014247 103 AIMQNQSFIEGKVVVDVGCGTGILSIFCAQAG--AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID-EE 178 (428)
Q Consensus 103 ~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g--~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~-~~ 178 (428)
.+...+...++.+|||+|||+|.++..+++.+ ..+|+|+|++ .+++.|++++...++. +++++.+|+.+++.+ ++
T Consensus 28 ~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~~ 106 (219)
T 3dh0_A 28 KVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLK-NVEVLKSEENKIPLPDNT 106 (219)
T ss_dssp HHHHHHTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEECBTTBCSSCSSC
T ss_pred HHHHHhCCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEecccccCCCCCCC
Confidence 34444556788999999999999999999984 3499999999 9999999999888876 599999999988765 78
Q ss_pred eeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhhccCCCCcchhHHHHHhcC
Q 014247 179 VDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAMMPLAKQCA 258 (428)
Q Consensus 179 ~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G 258 (428)
||+|++.. .+.+..++..+++++.++|+|||.+++....... ..... .....++.+.+..+++++|
T Consensus 107 fD~v~~~~---~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~------~~~~~-----~~~~~~~~~~~~~~l~~~G 172 (219)
T 3dh0_A 107 VDFIFMAF---TFHELSEPLKFLEELKRVAKPFAYLAIIDWKKEE------RDKGP-----PPEEVYSEWEVGLILEDAG 172 (219)
T ss_dssp EEEEEEES---CGGGCSSHHHHHHHHHHHEEEEEEEEEEEECSSC------CSSSC-----CGGGSCCHHHHHHHHHHTT
T ss_pred eeEEEeeh---hhhhcCCHHHHHHHHHHHhCCCeEEEEEEecccc------cccCC-----chhcccCHHHHHHHHHHCC
Confidence 99999976 5566677899999999999999999875321110 00000 0123457788999999999
Q ss_pred CCCceEEeec
Q 014247 259 FEEPSVETIT 268 (428)
Q Consensus 259 f~~~~~~~~~ 268 (428)
|+......+.
T Consensus 173 f~~~~~~~~~ 182 (219)
T 3dh0_A 173 IRVGRVVEVG 182 (219)
T ss_dssp CEEEEEEEET
T ss_pred CEEEEEEeeC
Confidence 9987765544
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=2.2e-16 Score=150.08 Aligned_cols=165 Identities=17% Similarity=0.173 Sum_probs=121.6
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHH-cCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC
Q 014247 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQ-AGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID 176 (428)
Q Consensus 99 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~-~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~ 176 (428)
...+.+.+.+...++.+|||||||+|.++..+++ .|. +|+|+|+| .+++.|++++...++..+++++.+|+.+++
T Consensus 51 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-- 127 (287)
T 1kpg_A 51 AKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD-- 127 (287)
T ss_dssp HHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC--
T ss_pred HHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC--
Confidence 3445566666677889999999999999999995 466 99999999 999999999988888778999999998876
Q ss_pred CceeEEEEecchhhhcch--hhHHHHHHHHhcccccCeEEEccCCeeeEeec----CCcc--chhhhhh-----hhhccC
Q 014247 177 EEVDVIISEWMGYMLLYE--SMLGSVITARDRWLKRGGLILPSYATLYMAPV----THPD--RYSESID-----FWRNVY 243 (428)
Q Consensus 177 ~~~DlVvs~~~~~~l~~~--~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~----~~~~--~~~~~~~-----~~~~~~ 243 (428)
++||+|++.. ++++. .++..+++++.++|||||.+++.......... ..+. ....... .+....
T Consensus 128 ~~fD~v~~~~---~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (287)
T 1kpg_A 128 EPVDRIVSIG---AFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGR 204 (287)
T ss_dssp CCCSEEEEES---CGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCC
T ss_pred CCeeEEEEeC---chhhcChHHHHHHHHHHHHhcCCCCEEEEEEecCCCccccccccccccccccchhhhHHheeCCCCC
Confidence 8999999966 45554 56899999999999999999986543221000 0000 0000001 111222
Q ss_pred CCCcchhHHHHHhcCCCCceEEeecC
Q 014247 244 GIDMSAMMPLAKQCAFEEPSVETITG 269 (428)
Q Consensus 244 ~~~~~~l~~~l~~~Gf~~~~~~~~~~ 269 (428)
..+.+.+..+++++||+...+.....
T Consensus 205 ~~s~~~~~~~l~~aGf~~~~~~~~~~ 230 (287)
T 1kpg_A 205 LPSIPMVQECASANGFTVTRVQSLQP 230 (287)
T ss_dssp CCCHHHHHHHHHTTTCEEEEEEECHH
T ss_pred CCCHHHHHHHHHhCCcEEEEEEeCcH
Confidence 34678899999999999888776543
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.69 E-value=4.2e-16 Score=148.15 Aligned_cols=162 Identities=14% Similarity=0.196 Sum_probs=116.7
Q ss_pred HHHHHHhc-cCCCCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC
Q 014247 100 YRAAIMQN-QSFIEGKVVVDVGCGTGILSIFCAQA-G-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI 175 (428)
Q Consensus 100 ~~~~i~~~-~~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~ 175 (428)
+...+.+. ....++.+|||||||+|.++..+++. + ..+|+|+|+| .+++.|++++...+. +++++++|+.+++.
T Consensus 9 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~ 86 (284)
T 3gu3_A 9 YVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY--DSEFLEGDATEIEL 86 (284)
T ss_dssp HHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSS--EEEEEESCTTTCCC
T ss_pred HHHHHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcchhhcCc
Confidence 33444443 35567899999999999999999987 2 3499999999 999999998877655 69999999999888
Q ss_pred CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCee-----eEeecCCccc-hhhhhhhhhc--------
Q 014247 176 DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATL-----YMAPVTHPDR-YSESIDFWRN-------- 241 (428)
Q Consensus 176 ~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~-----~~~~~~~~~~-~~~~~~~~~~-------- 241 (428)
+++||+|++.. .+.+..+...+++++.++|+|||.+++..+.. ... ...... .......|..
T Consensus 87 ~~~fD~v~~~~---~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (284)
T 3gu3_A 87 NDKYDIAICHA---FLLHMTTPETMLQKMIHSVKKGGKIICFEPHWISNMASYL-LDGEKQSEFIQLGVLQKLFESDTQR 162 (284)
T ss_dssp SSCEEEEEEES---CGGGCSSHHHHHHHHHHTEEEEEEEEEEECCHHHHHHSEE-ETTSCHHHHCCHHHHHHHHHHHHHH
T ss_pred CCCeeEEEECC---hhhcCCCHHHHHHHHHHHcCCCCEEEEEecchhcccccce-ecCcchhhccchHHHHHHHHHHhhh
Confidence 88999999976 56666788999999999999999999766541 110 010000 0000111111
Q ss_pred --cCCCCcchhHHHHHhcCCCCceEEee
Q 014247 242 --VYGIDMSAMMPLAKQCAFEEPSVETI 267 (428)
Q Consensus 242 --~~~~~~~~l~~~l~~~Gf~~~~~~~~ 267 (428)
........+..+++++||+.+.....
T Consensus 163 ~~~~~~~~~~l~~~l~~aGF~~v~~~~~ 190 (284)
T 3gu3_A 163 NGKDGNIGMKIPIYLSELGVKNIECRVS 190 (284)
T ss_dssp TCCCTTGGGTHHHHHHHTTCEEEEEEEC
T ss_pred hcccccHHHHHHHHHHHcCCCeEEEEEc
Confidence 11223567899999999988766543
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.2e-16 Score=145.34 Aligned_cols=155 Identities=19% Similarity=0.209 Sum_probs=110.8
Q ss_pred HHHHHhccC-CCCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCC
Q 014247 101 RAAIMQNQS-FIEGKVVVDVGCGTGILSIFCAQAG-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDE 177 (428)
Q Consensus 101 ~~~i~~~~~-~~~~~~VLDiGcGtG~ls~~la~~g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~ 177 (428)
.+.+...+. ..++.+|||||||+|.++..+++.. ..+|+|+|+| .+++.|++++...+ +++++++|+.+++.++
T Consensus 32 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~d~~~~~~~~ 108 (234)
T 3dtn_A 32 YGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL---KVKYIEADYSKYDFEE 108 (234)
T ss_dssp HHHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCT---TEEEEESCTTTCCCCS
T ss_pred HHHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCC---CEEEEeCchhccCCCC
Confidence 344555544 4678899999999999999999983 4499999999 99999988865543 6999999999988779
Q ss_pred ceeEEEEecchhhhcchhhH--HHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhh---------------
Q 014247 178 EVDVIISEWMGYMLLYESML--GSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWR--------------- 240 (428)
Q Consensus 178 ~~DlVvs~~~~~~l~~~~~~--~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 240 (428)
+||+|++.. .+++..+. ..+++++.++|||||.+++...... ............|.
T Consensus 109 ~fD~v~~~~---~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (234)
T 3dtn_A 109 KYDMVVSAL---SIHHLEDEDKKELYKRSYSILKESGIFINADLVHG----ETAFIENLNKTIWRQYVENSGLTEEEIAA 181 (234)
T ss_dssp CEEEEEEES---CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBC----SSHHHHHHHHHHHHHHHHTSSCCHHHHHT
T ss_pred CceEEEEeC---ccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCC----CChhhhhHHHHHHHHHHHhcCCCHHHHHH
Confidence 999999976 44444433 4699999999999999997543211 00000000011111
Q ss_pred ------ccCCCCcchhHHHHHhcCCCCceEE
Q 014247 241 ------NVYGIDMSAMMPLAKQCAFEEPSVE 265 (428)
Q Consensus 241 ------~~~~~~~~~l~~~l~~~Gf~~~~~~ 265 (428)
....++...+..+++++||+.+.+.
T Consensus 182 ~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~ 212 (234)
T 3dtn_A 182 GYERSKLDKDIEMNQQLNWLKEAGFRDVSCI 212 (234)
T ss_dssp TC----CCCCCBHHHHHHHHHHTTCEEEEEE
T ss_pred HHHhcccccccCHHHHHHHHHHcCCCceeee
Confidence 1223456778889999999987654
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.69 E-value=3.3e-16 Score=145.84 Aligned_cols=155 Identities=9% Similarity=0.019 Sum_probs=115.2
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC-C
Q 014247 100 YRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID-E 177 (428)
Q Consensus 100 ~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~-~ 177 (428)
+...+...+...++.+|||||||+|.++..+++.+..+|+|+|++ .+++.|++++... .+++++++|+.+++++ +
T Consensus 81 ~~~~~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~~ 157 (254)
T 1xtp_A 81 GSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM---PVGKFILASMETATLPPN 157 (254)
T ss_dssp HHHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS---SEEEEEESCGGGCCCCSS
T ss_pred HHHHHHHhhcccCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccC---CceEEEEccHHHCCCCCC
Confidence 344555555566789999999999999999998877689999999 9999998876543 4699999999998765 7
Q ss_pred ceeEEEEecchhhhcch--hhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhhccCCCCcchhHHHHH
Q 014247 178 EVDVIISEWMGYMLLYE--SMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAMMPLAK 255 (428)
Q Consensus 178 ~~DlVvs~~~~~~l~~~--~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 255 (428)
+||+|++.. .+++. .++..+++++.++|+|||.+++...... ....+.. .....+..+...+..+++
T Consensus 158 ~fD~v~~~~---~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~-----~~~~~~~---~~~~~~~~~~~~~~~~l~ 226 (254)
T 1xtp_A 158 TYDLIVIQW---TAIYLTDADFVKFFKHCQQALTPNGYIFFKENCST-----GDRFLVD---KEDSSLTRSDIHYKRLFN 226 (254)
T ss_dssp CEEEEEEES---CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC-------CCEEEE---TTTTEEEBCHHHHHHHHH
T ss_pred CeEEEEEcc---hhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCC-----cccceec---ccCCcccCCHHHHHHHHH
Confidence 899999976 44454 5689999999999999999997653110 0000000 001122346788999999
Q ss_pred hcCCCCceEEeec
Q 014247 256 QCAFEEPSVETIT 268 (428)
Q Consensus 256 ~~Gf~~~~~~~~~ 268 (428)
++||+...+....
T Consensus 227 ~aGf~~~~~~~~~ 239 (254)
T 1xtp_A 227 ESGVRVVKEAFQE 239 (254)
T ss_dssp HHTCCEEEEEECT
T ss_pred HCCCEEEEeeecC
Confidence 9999987766543
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.2e-16 Score=148.04 Aligned_cols=164 Identities=20% Similarity=0.306 Sum_probs=121.8
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC
Q 014247 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAG-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID 176 (428)
Q Consensus 99 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~ 176 (428)
.+.+.+.......++.+|||||||+|.++..+++.+ ..+|+|+|++ .+++.|++++..+++. +++++.+|+.+++++
T Consensus 24 ~l~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~ 102 (276)
T 3mgg_A 24 TLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIK-NVKFLQANIFSLPFE 102 (276)
T ss_dssp HHHHHHHTTCCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCGGGCCSC
T ss_pred HHHHHHhhcccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEcccccCCCC
Confidence 455566666666788999999999999999999984 4599999999 9999999999988876 499999999998764
Q ss_pred -CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCee---eEeecCCccc---hhhhhhh--hhccCCCCc
Q 014247 177 -EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATL---YMAPVTHPDR---YSESIDF--WRNVYGIDM 247 (428)
Q Consensus 177 -~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~---~~~~~~~~~~---~~~~~~~--~~~~~~~~~ 247 (428)
++||+|++.. .+.+..++..+++++.++|+|||.+++..... ...+. .... +...... +.....+..
T Consensus 103 ~~~fD~v~~~~---~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (276)
T 3mgg_A 103 DSSFDHIFVCF---VLEHLQSPEEALKSLKKVLKPGGTITVIEGDHGSCYFHPE-GKKAIEAWNCLIRVQAYMKGNSLVG 178 (276)
T ss_dssp TTCEEEEEEES---CGGGCSCHHHHHHHHHHHEEEEEEEEEEEECGGGCEEESC-CHHHHHHHHHHHHHHHHTTCCTTGG
T ss_pred CCCeeEEEEec---hhhhcCCHHHHHHHHHHHcCCCcEEEEEEcCCCCceECCC-cHHHHHHHHHHHHHHHhcCCCcchH
Confidence 8999999976 66677778899999999999999998764321 11111 1110 0000000 011223456
Q ss_pred chhHHHHHhcCCCCceEEee
Q 014247 248 SAMMPLAKQCAFEEPSVETI 267 (428)
Q Consensus 248 ~~l~~~l~~~Gf~~~~~~~~ 267 (428)
..+..+++++||+.+.++..
T Consensus 179 ~~l~~~l~~aGf~~v~~~~~ 198 (276)
T 3mgg_A 179 RQIYPLLQESGFEKIRVEPR 198 (276)
T ss_dssp GGHHHHHHHTTCEEEEEEEE
T ss_pred HHHHHHHHHCCCCeEEEeeE
Confidence 78999999999998877654
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.9e-16 Score=152.09 Aligned_cols=167 Identities=14% Similarity=0.134 Sum_probs=116.9
Q ss_pred HHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHH--HcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc
Q 014247 98 ETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCA--QAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE 174 (428)
Q Consensus 98 ~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la--~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~ 174 (428)
..+.+.+... ..++.+|||||||+|.++..++ .....+|+|+|++ .+++.|++++...++.++++++++|+.+++
T Consensus 106 ~~~~~~l~~~--l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 183 (305)
T 3ocj_A 106 GHFRRALQRH--LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLD 183 (305)
T ss_dssp HHHHHHHHHH--CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCC
T ss_pred HHHHHHHHhh--CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCC
Confidence 3355555443 3678999999999999999985 3344599999999 999999999998888888999999999988
Q ss_pred CCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCcc----chhh-----hhhhhhcc---
Q 014247 175 IDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPD----RYSE-----SIDFWRNV--- 242 (428)
Q Consensus 175 ~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~----~~~~-----~~~~~~~~--- 242 (428)
++++||+|++..+.+.+........+++++.++|||||++++.............. .+.. ....+...
T Consensus 184 ~~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 263 (305)
T 3ocj_A 184 TREGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQP 263 (305)
T ss_dssp CCSCEEEEECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred ccCCeEEEEECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhh
Confidence 77999999996633333233334458999999999999999865321100000000 0000 00001111
Q ss_pred ---CCCCcchhHHHHHhcCCCCceEEe
Q 014247 243 ---YGIDMSAMMPLAKQCAFEEPSVET 266 (428)
Q Consensus 243 ---~~~~~~~l~~~l~~~Gf~~~~~~~ 266 (428)
..++...+..+++++||+.+.+..
T Consensus 264 ~~~~~~~~~~~~~~l~~aGF~~v~~~~ 290 (305)
T 3ocj_A 264 RWNALRTHAQTRAQLEEAGFTDLRFED 290 (305)
T ss_dssp SCCCCCCHHHHHHHHHHTTCEEEEEEC
T ss_pred hhhccCCHHHHHHHHHHCCCEEEEEEc
Confidence 225688899999999999876664
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=4.7e-16 Score=150.12 Aligned_cols=165 Identities=15% Similarity=0.137 Sum_probs=122.2
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC
Q 014247 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID 176 (428)
Q Consensus 99 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~ 176 (428)
...+.+.+.+...++.+|||||||+|.++..+++. |+ +|+|+|+| .+++.|++++...++.++++++.+|+.+++
T Consensus 77 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-- 153 (318)
T 2fk8_A 77 AKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA-- 153 (318)
T ss_dssp HHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC--
T ss_pred HHHHHHHHhcCCCCcCEEEEEcccchHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC--
Confidence 34455666666778899999999999999999987 77 99999999 999999999998888888999999998875
Q ss_pred CceeEEEEecchhhhcch--hhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccch------hhhhhh-----hhccC
Q 014247 177 EEVDVIISEWMGYMLLYE--SMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRY------SESIDF-----WRNVY 243 (428)
Q Consensus 177 ~~~DlVvs~~~~~~l~~~--~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~------~~~~~~-----~~~~~ 243 (428)
++||+|++.. ++++. .++..+++++.++|||||++++...............+ .....+ +....
T Consensus 154 ~~fD~v~~~~---~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (318)
T 2fk8_A 154 EPVDRIVSIE---AFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGR 230 (318)
T ss_dssp CCCSEEEEES---CGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCC
T ss_pred CCcCEEEEeC---hHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccCCchhhhhccccccccccchhhHHHHhcCCCCc
Confidence 7899999976 44444 57899999999999999999976543211000000000 000011 11223
Q ss_pred CCCcchhHHHHHhcCCCCceEEeecC
Q 014247 244 GIDMSAMMPLAKQCAFEEPSVETITG 269 (428)
Q Consensus 244 ~~~~~~l~~~l~~~Gf~~~~~~~~~~ 269 (428)
..+.+.+..+++++||+...+..+..
T Consensus 231 ~~s~~~~~~~l~~aGf~~~~~~~~~~ 256 (318)
T 2fk8_A 231 LPSTEMMVEHGEKAGFTVPEPLSLRP 256 (318)
T ss_dssp CCCHHHHHHHHHHTTCBCCCCEECHH
T ss_pred CCCHHHHHHHHHhCCCEEEEEEecch
Confidence 34678899999999999888776543
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.68 E-value=5e-16 Score=140.70 Aligned_cols=137 Identities=22% Similarity=0.232 Sum_probs=106.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEEecchh
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWMGY 189 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~~~~~ 189 (428)
.++.+|||||||+|.++..+++.+. +|+|+|++ .+++.|++++ ++.++.+|+.+++..++||+|++..
T Consensus 42 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~-------~~~~~~~d~~~~~~~~~fD~v~~~~--- 110 (211)
T 3e23_A 42 PAGAKILELGCGAGYQAEAMLAAGF-DVDATDGSPELAAEASRRL-------GRPVRTMLFHQLDAIDAYDAVWAHA--- 110 (211)
T ss_dssp CTTCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH-------TSCCEECCGGGCCCCSCEEEEEECS---
T ss_pred CCCCcEEEECCCCCHHHHHHHHcCC-eEEEECCCHHHHHHHHHhc-------CCceEEeeeccCCCCCcEEEEEecC---
Confidence 5688999999999999999999876 99999999 9999998876 3678899999988679999999976
Q ss_pred hhcchh--hHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhhccCCCCcchhHHHHHhcC-CCCceEEe
Q 014247 190 MLLYES--MLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAMMPLAKQCA-FEEPSVET 266 (428)
Q Consensus 190 ~l~~~~--~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G-f~~~~~~~ 266 (428)
.+++.. ++..+++++.++|||||++++..... ....... +......++...+..+++++| |+...+..
T Consensus 111 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~------~~~~~~~---~~~~~~~~~~~~~~~~l~~aG~f~~~~~~~ 181 (211)
T 3e23_A 111 CLLHVPRDELADVLKLIWRALKPGGLFYASYKSG------EGEGRDK---LARYYNYPSEEWLRARYAEAGTWASVAVES 181 (211)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECC------SSCEECT---TSCEECCCCHHHHHHHHHHHCCCSEEEEEE
T ss_pred chhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcCC------Ccccccc---cchhccCCCHHHHHHHHHhCCCcEEEEEEe
Confidence 444443 68899999999999999998753211 1111010 111234568899999999999 99877664
Q ss_pred e
Q 014247 267 I 267 (428)
Q Consensus 267 ~ 267 (428)
.
T Consensus 182 ~ 182 (211)
T 3e23_A 182 S 182 (211)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.5e-16 Score=146.74 Aligned_cols=141 Identities=19% Similarity=0.155 Sum_probs=111.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEEecchh
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWMGY 189 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~~~~~ 189 (428)
.++.+|||||||+|.++..+++.+. +|+|+|+| .+++.|++++...+...+++++++|+.+++..++||+|++..
T Consensus 65 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~--- 140 (235)
T 3lcc_A 65 LPLGRALVPGCGGGHDVVAMASPER-FVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELFDLIFDYV--- 140 (235)
T ss_dssp SCCEEEEEETCTTCHHHHHHCBTTE-EEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSCEEEEEEES---
T ss_pred CCCCCEEEeCCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCCeeEEEECh---
Confidence 3446999999999999999988766 89999999 999999998877656667999999999987778999999976
Q ss_pred hhcchh--hHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhhccCCCCcchhHHHHHhcCCCCceEEee
Q 014247 190 MLLYES--MLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAMMPLAKQCAFEEPSVETI 267 (428)
Q Consensus 190 ~l~~~~--~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~ 267 (428)
.+.+.. +...+++++.++|+|||.+++...... .. .....+.++...+..+++++||+...++..
T Consensus 141 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-------~~------~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 207 (235)
T 3lcc_A 141 FFCAIEPEMRPAWAKSMYELLKPDGELITLMYPIT-------DH------VGGPPYKVDVSTFEEVLVPIGFKAVSVEEN 207 (235)
T ss_dssp STTTSCGGGHHHHHHHHHHHEEEEEEEEEEECCCS-------CC------CSCSSCCCCHHHHHHHHGGGTEEEEEEEEC
T ss_pred hhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEeccc-------cc------CCCCCccCCHHHHHHHHHHcCCeEEEEEec
Confidence 343333 789999999999999999986432211 00 001124467889999999999998777665
Q ss_pred c
Q 014247 268 T 268 (428)
Q Consensus 268 ~ 268 (428)
.
T Consensus 208 ~ 208 (235)
T 3lcc_A 208 P 208 (235)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.68 E-value=1.1e-16 Score=148.07 Aligned_cols=117 Identities=20% Similarity=0.271 Sum_probs=93.7
Q ss_pred HHHHHHHhccCC--CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC
Q 014247 99 TYRAAIMQNQSF--IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI 175 (428)
Q Consensus 99 ~~~~~i~~~~~~--~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~ 175 (428)
.+.+.+.+.+.. .++.+|||||||+|.++..+++.+. +|+|+|++ .+++.|+++....+. ++.++++|+.+++.
T Consensus 22 ~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~~~D~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~ 98 (246)
T 1y8c_A 22 KWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQGL--KPRLACQDISNLNI 98 (246)
T ss_dssp HHHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHHHHHHTTC--CCEEECCCGGGCCC
T ss_pred HHHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHCCC-cEEEEECCHHHHHHHHHHHhhcCC--CeEEEecccccCCc
Confidence 344444444332 3778999999999999999999876 89999999 999999999887765 58999999999877
Q ss_pred CCceeEEEEec-chhhhcchhhHHHHHHHHhcccccCeEEEccC
Q 014247 176 DEEVDVIISEW-MGYMLLYESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 176 ~~~~DlVvs~~-~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
+++||+|++.. ..+.+....++..+++++.++|+|||.+++..
T Consensus 99 ~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 142 (246)
T 1y8c_A 99 NRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDI 142 (246)
T ss_dssp SCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred cCCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 78999999853 32223223678999999999999999998743
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=6.4e-16 Score=143.01 Aligned_cols=153 Identities=15% Similarity=0.189 Sum_probs=116.4
Q ss_pred HhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC-CceeEE
Q 014247 105 MQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID-EEVDVI 182 (428)
Q Consensus 105 ~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~-~~~DlV 182 (428)
.+.+...++.+|||||||+|.++..+++.+. +|+|+|++ .+++.|++++..+++. +++++++|+.+++++ ++||+|
T Consensus 14 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~fD~v 91 (239)
T 1xxl_A 14 IKTAECRAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGVE-NVRFQQGTAESLPFPDDSFDII 91 (239)
T ss_dssp HHHHTCCTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHHTCC-SEEEEECBTTBCCSCTTCEEEE
T ss_pred HHHhCcCCCCEEEEEccCcCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHHHHcCCC-CeEEEecccccCCCCCCcEEEE
Confidence 3444567889999999999999999999865 99999999 9999999998888775 599999999998775 789999
Q ss_pred EEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhh------hccCCCCcchhHHHHHh
Q 014247 183 ISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFW------RNVYGIDMSAMMPLAKQ 256 (428)
Q Consensus 183 vs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~l~~ 256 (428)
++.. .+++..++..+++++.++|+|||.+++...... ...........+ .....++...+..++++
T Consensus 92 ~~~~---~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 163 (239)
T 1xxl_A 92 TCRY---AAHHFSDVRKAVREVARVLKQDGRFLLVDHYAP-----EDPVLDEFVNHLNRLRDPSHVRESSLSEWQAMFSA 163 (239)
T ss_dssp EEES---CGGGCSCHHHHHHHHHHHEEEEEEEEEEEECBC-----SSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHH
T ss_pred EECC---chhhccCHHHHHHHHHHHcCCCcEEEEEEcCCC-----CChhHHHHHHHHHHhccccccCCCCHHHHHHHHHH
Confidence 9975 566667789999999999999999987532210 011111111100 11334567889999999
Q ss_pred cCCCCceEEee
Q 014247 257 CAFEEPSVETI 267 (428)
Q Consensus 257 ~Gf~~~~~~~~ 267 (428)
+||+...+...
T Consensus 164 aGf~~~~~~~~ 174 (239)
T 1xxl_A 164 NQLAYQDIQKW 174 (239)
T ss_dssp TTEEEEEEEEE
T ss_pred CCCcEEEEEee
Confidence 99987666544
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.67 E-value=8e-17 Score=144.98 Aligned_cols=139 Identities=17% Similarity=0.200 Sum_probs=106.9
Q ss_pred CCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC-CceeEEEEecchhh
Q 014247 113 GKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID-EEVDVIISEWMGYM 190 (428)
Q Consensus 113 ~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~-~~~DlVvs~~~~~~ 190 (428)
+.+|||||||+|.++..+++.|. +|+|+|++ .+++.|+++. .+++++++|+.+++.+ ++||+|++.. .
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~~fD~v~~~~---~ 111 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASLGH-QIEGLEPATRLVELARQTH------PSVTFHHGTITDLSDSPKRWAGLLAWY---S 111 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHTTC-CEEEECCCHHHHHHHHHHC------TTSEEECCCGGGGGGSCCCEEEEEEES---S
T ss_pred CCeEEEecCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHhC------CCCeEEeCcccccccCCCCeEEEEehh---h
Confidence 78999999999999999999977 89999999 9999888762 2589999999998765 8999999965 4
Q ss_pred hcch--hhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhhccCCCCcchhHHHHHhcCCCCceEEeec
Q 014247 191 LLYE--SMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAMMPLAKQCAFEEPSVETIT 268 (428)
Q Consensus 191 l~~~--~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~~ 268 (428)
+++. .++..+++++.++|+|||.+++....... ...+. ......+.++...+..+++++||+...+....
T Consensus 112 l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~-----~~~~~---~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 183 (203)
T 3h2b_A 112 LIHMGPGELPDALVALRMAVEDGGGLLMSFFSGPS-----LEPMY---HPVATAYRWPLPELAQALETAGFQVTSSHWDP 183 (203)
T ss_dssp STTCCTTTHHHHHHHHHHTEEEEEEEEEEEECCSS-----CEEEC---CSSSCEEECCHHHHHHHHHHTTEEEEEEEECT
T ss_pred HhcCCHHHHHHHHHHHHHHcCCCcEEEEEEccCCc-----hhhhh---chhhhhccCCHHHHHHHHHHCCCcEEEEEecC
Confidence 4444 37899999999999999999875422110 00000 01112234678899999999999988777665
Q ss_pred C
Q 014247 269 G 269 (428)
Q Consensus 269 ~ 269 (428)
.
T Consensus 184 ~ 184 (203)
T 3h2b_A 184 R 184 (203)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.67 E-value=3.6e-16 Score=142.97 Aligned_cols=118 Identities=25% Similarity=0.320 Sum_probs=96.9
Q ss_pred hHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc
Q 014247 96 RTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE 174 (428)
Q Consensus 96 r~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~ 174 (428)
+.+.+.+.+.+.+ .++.+|||+|||+|.++..+++.+. +|+|+|++ .+++.|+++...++ .+++++++|+.+++
T Consensus 24 ~~~~~~~~l~~~~--~~~~~vLDlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~ 98 (227)
T 1ve3_A 24 RIETLEPLLMKYM--KKRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRE--SNVEFIVGDARKLS 98 (227)
T ss_dssp HHHHHHHHHHHSC--CSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCTTSCC
T ss_pred HHHHHHHHHHHhc--CCCCeEEEEeccCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcC--CCceEEECchhcCC
Confidence 3445566666665 3478999999999999999999877 99999999 99999999988776 46999999999877
Q ss_pred CC-CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCC
Q 014247 175 ID-EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYA 219 (428)
Q Consensus 175 ~~-~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 219 (428)
.+ ++||+|++.... .+.+..++..+++++.++|+|||.+++...
T Consensus 99 ~~~~~~D~v~~~~~~-~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 143 (227)
T 1ve3_A 99 FEDKTFDYVIFIDSI-VHFEPLELNQVFKEVRRVLKPSGKFIMYFT 143 (227)
T ss_dssp SCTTCEEEEEEESCG-GGCCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCCcEEEEEEcCch-HhCCHHHHHHHHHHHHHHcCCCcEEEEEec
Confidence 64 789999997631 244556788999999999999999987644
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=3.1e-16 Score=146.83 Aligned_cols=159 Identities=21% Similarity=0.310 Sum_probs=118.0
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC-C
Q 014247 101 RAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID-E 177 (428)
Q Consensus 101 ~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~-~ 177 (428)
.+.+.+.+...++.+|||||||+|.++..+++. +. +|+|+|+| .+++.|+++.... .+++++++|+.+++.+ +
T Consensus 44 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~~ 119 (266)
T 3ujc_A 44 TKKILSDIELNENSKVLDIGSGLGGGCMYINEKYGA-HTHGIDICSNIVNMANERVSGN---NKIIFEANDILTKEFPEN 119 (266)
T ss_dssp HHHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHTCCSC---TTEEEEECCTTTCCCCTT
T ss_pred HHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhhcC---CCeEEEECccccCCCCCC
Confidence 455556666778899999999999999999997 55 99999999 9999988775443 5699999999998774 8
Q ss_pred ceeEEEEecchhhhcch--hhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhhccCCCCcchhHHHHH
Q 014247 178 EVDVIISEWMGYMLLYE--SMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAMMPLAK 255 (428)
Q Consensus 178 ~~DlVvs~~~~~~l~~~--~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 255 (428)
+||+|++.. .+++. .++..+++++.++|||||.+++......... .....+..... ......++...+..+++
T Consensus 120 ~fD~v~~~~---~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~l~ 194 (266)
T 3ujc_A 120 NFDLIYSRD---AILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKE-NWDDEFKEYVK-QRKYTLITVEEYADILT 194 (266)
T ss_dssp CEEEEEEES---CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGG-GCCHHHHHHHH-HHTCCCCCHHHHHHHHH
T ss_pred cEEEEeHHH---HHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcc-cchHHHHHHHh-cCCCCCCCHHHHHHHHH
Confidence 999999976 55565 7899999999999999999998653221100 00111111000 01123457888999999
Q ss_pred hcCCCCceEEeec
Q 014247 256 QCAFEEPSVETIT 268 (428)
Q Consensus 256 ~~Gf~~~~~~~~~ 268 (428)
++||+.+.+..+.
T Consensus 195 ~~Gf~~~~~~~~~ 207 (266)
T 3ujc_A 195 ACNFKNVVSKDLS 207 (266)
T ss_dssp HTTCEEEEEEECH
T ss_pred HcCCeEEEEEeCC
Confidence 9999988777654
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=2.3e-16 Score=150.99 Aligned_cols=166 Identities=12% Similarity=0.124 Sum_probs=115.9
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCC--CcEEEEEcccccccCC
Q 014247 100 YRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLT--DKVIVLHGRVEDVEID 176 (428)
Q Consensus 100 ~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~--~~v~~~~~d~~~l~~~ 176 (428)
....+...+.. ++.+|||||||+|.++..+++.|. +|+|+|+| .+++.|++++...++. .+++++++|+.+++.+
T Consensus 71 ~~~~~~~~~~~-~~~~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 148 (299)
T 3g2m_A 71 EAREFATRTGP-VSGPVLELAAGMGRLTFPFLDLGW-EVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFALD 148 (299)
T ss_dssp HHHHHHHHHCC-CCSCEEEETCTTTTTHHHHHTTTC-CEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCCS
T ss_pred HHHHHHHhhCC-CCCcEEEEeccCCHHHHHHHHcCC-eEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCcC
Confidence 33444444433 344999999999999999999976 89999999 9999999998876532 4699999999998888
Q ss_pred CceeEEEEecchhhhcc--hhhHHHHHHHHhcccccCeEEEccCCeeeEee---cCCccchh----hhhhhh--------
Q 014247 177 EEVDVIISEWMGYMLLY--ESMLGSVITARDRWLKRGGLILPSYATLYMAP---VTHPDRYS----ESIDFW-------- 239 (428)
Q Consensus 177 ~~~DlVvs~~~~~~l~~--~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~---~~~~~~~~----~~~~~~-------- 239 (428)
++||+|++.. ..+++ ..+...+++++.++|+|||++++......... ......+. ....+|
T Consensus 149 ~~fD~v~~~~--~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 226 (299)
T 3g2m_A 149 KRFGTVVISS--GSINELDEADRRGLYASVREHLEPGGKFLLSLAMSEAAESEPLERKQELPGRSGRRYVLHVRHLPAEE 226 (299)
T ss_dssp CCEEEEEECH--HHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCHHHHSCCCCC-------------CCEEEEEEEE
T ss_pred CCcCEEEECC--cccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCccccccchhccceeecCCCcEEEEEEEEecccc
Confidence 9999999743 12333 33578999999999999999998654322110 00000000 000000
Q ss_pred --------------------hccCCCCcchhHHHHHhcCCCCceEEeecC
Q 014247 240 --------------------RNVYGIDMSAMMPLAKQCAFEEPSVETITG 269 (428)
Q Consensus 240 --------------------~~~~~~~~~~l~~~l~~~Gf~~~~~~~~~~ 269 (428)
.....++..++..+++++||+...+..+..
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~ 276 (299)
T 3g2m_A 227 IQEITIHPADETTDPFVVCTHRRRLLAPDQVVRELVRSGFDVIAQTPFAS 276 (299)
T ss_dssp EEEEEEEESCC--CCCCEEEEEEEEECHHHHHHHHHHTTCEEEEEEEECT
T ss_pred EEEEEEEeccCCCCcEEEEEEEEEEeCHHHHHHHHHHCCCEEEEEEecCC
Confidence 012245788999999999999888776653
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=5.4e-16 Score=147.79 Aligned_cols=158 Identities=19% Similarity=0.182 Sum_probs=115.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC--CCceeEEEEecc
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI--DEEVDVIISEWM 187 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~--~~~~DlVvs~~~ 187 (428)
.++.+|||||||+|.++..+++.+..+|+|+|++ .+++.|++++...++..++.++++|+.++++ +++||+|++...
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~ 142 (298)
T 1ri5_A 63 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFS 142 (298)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESC
T ss_pred CCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECch
Confidence 6788999999999999999988877799999999 9999999999888877789999999998765 478999999753
Q ss_pred hhh-hcchhhHHHHHHHHhcccccCeEEEccCCeee----------------EeecCCccchh----hhhhhh--h----
Q 014247 188 GYM-LLYESMLGSVITARDRWLKRGGLILPSYATLY----------------MAPVTHPDRYS----ESIDFW--R---- 240 (428)
Q Consensus 188 ~~~-l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~----------------~~~~~~~~~~~----~~~~~~--~---- 240 (428)
.+. +.+..++..+++++.++|+|||.+++..++.. ........... ....++ .
T Consensus 143 l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~ 222 (298)
T 1ri5_A 143 FHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSVNN 222 (298)
T ss_dssp GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEETTSCSS
T ss_pred hhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHccCccCCeeEEEEeCccccccccccceEEEEEchhhcC
Confidence 222 24467789999999999999999997654321 00000000000 000000 0
Q ss_pred -ccCCCCcchhHHHHHhcCCCCceEEeec
Q 014247 241 -NVYGIDMSAMMPLAKQCAFEEPSVETIT 268 (428)
Q Consensus 241 -~~~~~~~~~l~~~l~~~Gf~~~~~~~~~ 268 (428)
..+.++...+..+++++||+.+.+..+.
T Consensus 223 ~~~~~~~~~~l~~ll~~aGf~~v~~~~~~ 251 (298)
T 1ri5_A 223 CIEYFVDFTRMVDGFKRLGLSLVERKGFI 251 (298)
T ss_dssp EEEECCCHHHHHHHHHTTTEEEEEEEEHH
T ss_pred CcccccCHHHHHHHHHHcCCEEEEecCHH
Confidence 0133567899999999999987776554
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.66 E-value=1e-16 Score=150.67 Aligned_cols=151 Identities=13% Similarity=0.131 Sum_probs=107.5
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCC----------------------------
Q 014247 109 SFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNL---------------------------- 159 (428)
Q Consensus 109 ~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~---------------------------- 159 (428)
...++.+|||||||+|.++..++..|+.+|+|+|+| .|++.|+++++.+..
T Consensus 52 ~~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~ 131 (263)
T 2a14_A 52 GGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL 131 (263)
T ss_dssp TSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CCCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHH
Confidence 446788999999999999888888888789999999 999999987655321
Q ss_pred CCcEE-EEEcccccc-cC----CCceeEEEEecchhhh-cchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccch
Q 014247 160 TDKVI-VLHGRVEDV-EI----DEEVDVIISEWMGYML-LYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRY 232 (428)
Q Consensus 160 ~~~v~-~~~~d~~~l-~~----~~~~DlVvs~~~~~~l-~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~ 232 (428)
..++. ++++|+.+. ++ .++||+|++..+.+.+ ....++..+++++.++|||||.+++... ... ..+
T Consensus 132 ~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~------~~~-~~~ 204 (263)
T 2a14_A 132 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVT------LRL-PSY 204 (263)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE------SSC-CEE
T ss_pred HhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEe------ecC-ccc
Confidence 01244 889999874 22 3689999997743332 2345678999999999999999998631 110 011
Q ss_pred hhhhhhhhccCCCCcchhHHHHHhcCCCCceEEee
Q 014247 233 SESIDFWRNVYGIDMSAMMPLAKQCAFEEPSVETI 267 (428)
Q Consensus 233 ~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~ 267 (428)
......| ..+.++.+.+..++.++||+...+...
T Consensus 205 ~~g~~~~-~~~~~~~~~l~~~l~~aGF~i~~~~~~ 238 (263)
T 2a14_A 205 MVGKREF-SCVALEKGEVEQAVLDAGFDIEQLLHS 238 (263)
T ss_dssp EETTEEE-ECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred eeCCeEe-eccccCHHHHHHHHHHCCCEEEEEeec
Confidence 0000001 124567889999999999998776655
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.66 E-value=4.8e-16 Score=143.94 Aligned_cols=144 Identities=15% Similarity=0.142 Sum_probs=108.4
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC-CceeEEEEecchh
Q 014247 112 EGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID-EEVDVIISEWMGY 189 (428)
Q Consensus 112 ~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~-~~~DlVvs~~~~~ 189 (428)
++.+|||||||+|.++..+++.+..+|+|+|++ .+++.|++++...+ ..++.++.+|+.+++.+ ++||+|++..
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~~d~~~~~~~~~~fD~v~~~~--- 154 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEG-KRVRNYFCCGLQDFTPEPDSYDVIWIQW--- 154 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGG-GGEEEEEECCGGGCCCCSSCEEEEEEES---
T ss_pred CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcC-CceEEEEEcChhhcCCCCCCEEEEEEcc---
Confidence 578999999999999999988876699999999 99999998876654 23589999999988765 5899999976
Q ss_pred hhcchhh--HHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhhccCCCCcchhHHHHHhcCCCCceEEee
Q 014247 190 MLLYESM--LGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAMMPLAKQCAFEEPSVETI 267 (428)
Q Consensus 190 ~l~~~~~--~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~ 267 (428)
.+.+..+ ...+++++.++|+|||++++....... ...+... ...+..+...+..+++++||+...+...
T Consensus 155 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~-----~~~~~~~----~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 225 (241)
T 2ex4_A 155 VIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQE-----GVILDDV----DSSVCRDLDVVRRIICSAGLSLLAEERQ 225 (241)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSS-----SEEEETT----TTEEEEBHHHHHHHHHHTTCCEEEEEEC
T ss_pred hhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCC-----cceeccc----CCcccCCHHHHHHHHHHcCCeEEEeeec
Confidence 4444444 568999999999999999975432110 1111110 0112236778999999999998776654
Q ss_pred c
Q 014247 268 T 268 (428)
Q Consensus 268 ~ 268 (428)
.
T Consensus 226 ~ 226 (241)
T 2ex4_A 226 E 226 (241)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.66 E-value=6.2e-16 Score=142.89 Aligned_cols=154 Identities=17% Similarity=0.148 Sum_probs=114.6
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC-
Q 014247 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID- 176 (428)
Q Consensus 99 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~- 176 (428)
.+.+.+...+ .++.+|||||||+|.++..+++.+. +|+|+|++ .+++.|+++. ...+++++++|+.+++.+
T Consensus 42 ~~~~~l~~~~--~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~----~~~~~~~~~~d~~~~~~~~ 114 (242)
T 3l8d_A 42 TIIPFFEQYV--KKEAEVLDVGCGDGYGTYKLSRTGY-KAVGVDISEVMIQKGKERG----EGPDLSFIKGDLSSLPFEN 114 (242)
T ss_dssp THHHHHHHHS--CTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHTTT----CBTTEEEEECBTTBCSSCT
T ss_pred HHHHHHHHHc--CCCCeEEEEcCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhc----ccCCceEEEcchhcCCCCC
Confidence 3455555554 4788999999999999999999976 89999999 8998887653 235699999999998764
Q ss_pred CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhh---ccCCCCcchhHHH
Q 014247 177 EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWR---NVYGIDMSAMMPL 253 (428)
Q Consensus 177 ~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~ 253 (428)
++||+|++.. .+++..++..+++++.++|+|||.+++....... ..........+. ....++...+..+
T Consensus 115 ~~fD~v~~~~---~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (242)
T 3l8d_A 115 EQFEAIMAIN---SLEWTEEPLRALNEIKRVLKSDGYACIAILGPTA-----KPRENSYPRLYGKDVVCNTMMPWEFEQL 186 (242)
T ss_dssp TCEEEEEEES---CTTSSSCHHHHHHHHHHHEEEEEEEEEEEECTTC-----GGGGGGGGGGGTCCCSSCCCCHHHHHHH
T ss_pred CCccEEEEcC---hHhhccCHHHHHHHHHHHhCCCeEEEEEEcCCcc-----hhhhhhhhhhccccccccCCCHHHHHHH
Confidence 8999999865 6667778899999999999999999876422110 011011111111 1234567789999
Q ss_pred HHhcCCCCceEEee
Q 014247 254 AKQCAFEEPSVETI 267 (428)
Q Consensus 254 l~~~Gf~~~~~~~~ 267 (428)
++++||+......+
T Consensus 187 l~~~Gf~~~~~~~~ 200 (242)
T 3l8d_A 187 VKEQGFKVVDGIGV 200 (242)
T ss_dssp HHHTTEEEEEEEEE
T ss_pred HHHcCCEEEEeecc
Confidence 99999998776644
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.65 E-value=2e-15 Score=141.16 Aligned_cols=158 Identities=18% Similarity=0.221 Sum_probs=111.1
Q ss_pred HHHHHHHHh-ccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC
Q 014247 98 ETYRAAIMQ-NQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI 175 (428)
Q Consensus 98 ~~~~~~i~~-~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~ 175 (428)
+.+.+.+.. .....++.+|||||||+|.++..+++.+. +|+|+|+| .+++.|++++ .+...++.++.+|+.++++
T Consensus 24 ~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~--~~~~~~~~~~~~d~~~~~~ 100 (263)
T 2yqz_A 24 GQIATAMASAVHPKGEEPVFLELGVGTGRIALPLIARGY-RYIALDADAAMLEVFRQKI--AGVDRKVQVVQADARAIPL 100 (263)
T ss_dssp HHHHHHHHHHCCCSSSCCEEEEETCTTSTTHHHHHTTTC-EEEEEESCHHHHHHHHHHT--TTSCTTEEEEESCTTSCCS
T ss_pred HHHHHHHHHhhcCCCCCCEEEEeCCcCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHh--hccCCceEEEEcccccCCC
Confidence 344444433 22446788999999999999999999865 89999999 9999998887 2333569999999998876
Q ss_pred C-CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCc-----cchhhhhhhhh-----ccCC
Q 014247 176 D-EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHP-----DRYSESIDFWR-----NVYG 244 (428)
Q Consensus 176 ~-~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~-----~~~~~~~~~~~-----~~~~ 244 (428)
+ ++||+|++.. .+++..+...+++++.++|+|||.+++. +..+-... ..+........ ....
T Consensus 101 ~~~~fD~v~~~~---~l~~~~~~~~~l~~~~~~L~pgG~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (263)
T 2yqz_A 101 PDESVHGVIVVH---LWHLVPDWPKVLAEAIRVLKPGGALLEG----WDQAEASPEWTLQERWRAFAAEEGFPVERGLHA 173 (263)
T ss_dssp CTTCEEEEEEES---CGGGCTTHHHHHHHHHHHEEEEEEEEEE----EEEECCCHHHHHHHHHHHHHHHHTCCCCCCHHH
T ss_pred CCCCeeEEEECC---chhhcCCHHHHHHHHHHHCCCCcEEEEE----ecCCCccHHHHHHHHHHHHHHHhCCCccccccc
Confidence 4 7899999866 5666667899999999999999999876 22110011 00111111000 0012
Q ss_pred CCcchhHHHHHhcCCCCceEE
Q 014247 245 IDMSAMMPLAKQCAFEEPSVE 265 (428)
Q Consensus 245 ~~~~~l~~~l~~~Gf~~~~~~ 265 (428)
++...+..+++++||+...+.
T Consensus 174 ~~~~~~~~~l~~~Gf~~~~~~ 194 (263)
T 2yqz_A 174 KRLKEVEEALRRLGLKPRTRE 194 (263)
T ss_dssp HHHHHHHHHHHHTTCCCEEEE
T ss_pred CCHHHHHHHHHHcCCCcceEE
Confidence 345677888999999976543
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=5e-16 Score=148.31 Aligned_cols=153 Identities=15% Similarity=0.194 Sum_probs=105.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCC----------------------------
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLT---------------------------- 160 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~---------------------------- 160 (428)
.++++|||||||+|.++..+++. +..+|+|+|++ .+++.|++++...+..
T Consensus 45 ~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (292)
T 3g07_A 45 FRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRS 124 (292)
T ss_dssp TTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC----------------------------------
T ss_pred cCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccc
Confidence 46899999999999999999997 55699999999 9999999876654422
Q ss_pred -----------------------------CcEEEEEccccccc------CCCceeEEEEecchhhhc---chhhHHHHHH
Q 014247 161 -----------------------------DKVIVLHGRVEDVE------IDEEVDVIISEWMGYMLL---YESMLGSVIT 202 (428)
Q Consensus 161 -----------------------------~~v~~~~~d~~~l~------~~~~~DlVvs~~~~~~l~---~~~~~~~~l~ 202 (428)
++|+|+++|+.... ..++||+|+|..+...++ ....+..+++
T Consensus 125 ~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~ 204 (292)
T 3g07_A 125 CFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFR 204 (292)
T ss_dssp -----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHH
Confidence 57999999987644 348999999976432232 3446889999
Q ss_pred HHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhhccCCCCcchhHHHHHh--cCCCCceEE
Q 014247 203 ARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAMMPLAKQ--CAFEEPSVE 265 (428)
Q Consensus 203 ~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~Gf~~~~~~ 265 (428)
++.++|+|||+|++....+.... ............+ ....+....+..++.+ +||+..++.
T Consensus 205 ~~~~~LkpGG~lil~~~~~~~y~-~~~~~~~~~~~~~-~~~~~~p~~~~~~L~~~~~GF~~~~~~ 267 (292)
T 3g07_A 205 RIYRHLRPGGILVLEPQPWSSYG-KRKTLTETIYKNY-YRIQLKPEQFSSYLTSPDVGFSSYELV 267 (292)
T ss_dssp HHHHHEEEEEEEEEECCCHHHHH-TTTTSCHHHHHHH-HHCCCCGGGHHHHHTSTTTCCCEEEEC
T ss_pred HHHHHhCCCcEEEEecCCchhhh-hhhcccHHHHhhh-hcEEEcHHHHHHHHHhcCCCceEEEEe
Confidence 99999999999997643221000 0000001111111 1234557889999998 999865443
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.64 E-value=2.6e-16 Score=142.19 Aligned_cols=144 Identities=9% Similarity=0.012 Sum_probs=101.8
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCC-----------CCCcEEEEEcccccccCC
Q 014247 109 SFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANN-----------LTDKVIVLHGRVEDVEID 176 (428)
Q Consensus 109 ~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~-----------~~~~v~~~~~d~~~l~~~ 176 (428)
...++.+|||+|||+|..+..+++.|+ +|+|+|+| .|++.|+++..... ...+++++++|+.+++.+
T Consensus 19 ~~~~~~~vLD~GCG~G~~~~~la~~g~-~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~ 97 (203)
T 1pjz_A 19 NVVPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTAR 97 (203)
T ss_dssp CCCTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHH
T ss_pred ccCCCCEEEEeCCCCcHhHHHHHHCCC-eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcc
Confidence 346788999999999999999999987 89999999 99999988754210 124699999999998764
Q ss_pred --CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhhccCCCCcchhHHHH
Q 014247 177 --EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAMMPLA 254 (428)
Q Consensus 177 --~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 254 (428)
++||+|++....+.+ ...+...+++++.++|||||++++.... .. ... .....+.++.+++..++
T Consensus 98 ~~~~fD~v~~~~~l~~l-~~~~~~~~l~~~~r~LkpgG~~~l~~~~-----~~-~~~------~~~~~~~~~~~el~~~~ 164 (203)
T 1pjz_A 98 DIGHCAAFYDRAAMIAL-PADMRERYVQHLEALMPQACSGLLITLE-----YD-QAL------LEGPPFSVPQTWLHRVM 164 (203)
T ss_dssp HHHSEEEEEEESCGGGS-CHHHHHHHHHHHHHHSCSEEEEEEEEES-----SC-SSS------SSSCCCCCCHHHHHHTS
T ss_pred cCCCEEEEEECcchhhC-CHHHHHHHHHHHHHHcCCCcEEEEEEEe-----cC-ccc------cCCCCCCCCHHHHHHHh
Confidence 689999986532222 2345678999999999999984432111 00 000 00112345667788877
Q ss_pred HhcCCCCceEEee
Q 014247 255 KQCAFEEPSVETI 267 (428)
Q Consensus 255 ~~~Gf~~~~~~~~ 267 (428)
.+ ||+...++..
T Consensus 165 ~~-gf~i~~~~~~ 176 (203)
T 1pjz_A 165 SG-NWEVTKVGGQ 176 (203)
T ss_dssp CS-SEEEEEEEES
T ss_pred cC-CcEEEEeccc
Confidence 77 8876555443
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-15 Score=141.13 Aligned_cols=161 Identities=19% Similarity=0.272 Sum_probs=114.9
Q ss_pred HHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC-Cce
Q 014247 102 AAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID-EEV 179 (428)
Q Consensus 102 ~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~-~~~ 179 (428)
..+...+...++.+|||||||+|.++..+++.+..+|+|+|++ .+++.|+++... .+++++++|+.+++.+ ++|
T Consensus 33 ~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~~~~~~f 108 (243)
T 3bkw_A 33 PALRAMLPEVGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPD----TGITYERADLDKLHLPQDSF 108 (243)
T ss_dssp HHHHHHSCCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCS----SSEEEEECCGGGCCCCTTCE
T ss_pred HHHHHhccccCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhccc----CCceEEEcChhhccCCCCCc
Confidence 3455666667889999999999999999999877699999999 999888776432 3699999999988764 789
Q ss_pred eEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCc--------------cch-h---hhhhhhh-
Q 014247 180 DVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHP--------------DRY-S---ESIDFWR- 240 (428)
Q Consensus 180 DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~--------------~~~-~---~~~~~~~- 240 (428)
|+|++.. .+++..++..+++++.++|+|||.+++............. ..+ . ....+..
T Consensus 109 D~v~~~~---~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (243)
T 3bkw_A 109 DLAYSSL---ALHYVEDVARLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLAK 185 (243)
T ss_dssp EEEEEES---CGGGCSCHHHHHHHHHHHEEEEEEEEEEEECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTHHHH
T ss_pred eEEEEec---cccccchHHHHHHHHHHhcCcCcEEEEEeCCcccccCcCcceeecCCCceEEeecccccccceeeeeccC
Confidence 9999865 5566667899999999999999999876432110000000 000 0 0000000
Q ss_pred --ccCCCCcchhHHHHHhcCCCCceEEeecC
Q 014247 241 --NVYGIDMSAMMPLAKQCAFEEPSVETITG 269 (428)
Q Consensus 241 --~~~~~~~~~l~~~l~~~Gf~~~~~~~~~~ 269 (428)
..+.++.+.+..+++++||+...+....+
T Consensus 186 ~~~~~~~t~~~~~~~l~~aGF~~~~~~~~~~ 216 (243)
T 3bkw_A 186 GVVKHHRTVGTTLNALIRSGFAIEHVEEFCP 216 (243)
T ss_dssp SCCEEECCHHHHHHHHHHTTCEEEEEEECCC
T ss_pred ceEEEeccHHHHHHHHHHcCCEeeeeccCCC
Confidence 11224678899999999999877765433
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=2e-15 Score=137.12 Aligned_cols=117 Identities=16% Similarity=0.130 Sum_probs=95.0
Q ss_pred HHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC
Q 014247 98 ETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID 176 (428)
Q Consensus 98 ~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~ 176 (428)
..+...+...+...++.+|||||||+|.++..+++.+. +|+|+|++ .+++.|++++...+ +++++++|+.+++.+
T Consensus 37 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~d~~~~~~~ 112 (216)
T 3ofk_A 37 ERHTQLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPHCK-RLTVIDVMPRAIGRACQRTKRWS---HISWAATDILQFSTA 112 (216)
T ss_dssp HHHHHHHHHHTTTSSEEEEEEECCTTSHHHHHHGGGEE-EEEEEESCHHHHHHHHHHTTTCS---SEEEEECCTTTCCCS
T ss_pred HHHHHHHHHHcccCCCCcEEEEcCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHhcccCC---CeEEEEcchhhCCCC
Confidence 35566666666667888999999999999999999875 99999999 99999998876532 699999999998867
Q ss_pred CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccC
Q 014247 177 EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 177 ~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
++||+|++..+.+.+.....+..+++++.++|+|||.+++..
T Consensus 113 ~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 154 (216)
T 3ofk_A 113 ELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGS 154 (216)
T ss_dssp CCEEEEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCccEEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 899999997633333333345678999999999999999753
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.63 E-value=8e-16 Score=140.13 Aligned_cols=141 Identities=20% Similarity=0.309 Sum_probs=105.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEEecchh
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWMGY 189 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~~~~~ 189 (428)
.++.+|||||||+|.++..+++.+. +|+|+|++ .+++.|++++. .+++++++|+.+++.+++||+|++..
T Consensus 44 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~-----~~~~~~~~d~~~~~~~~~fD~v~~~~--- 114 (220)
T 3hnr_A 44 KSFGNVLEFGVGTGNLTNKLLLAGR-TVYGIEPSREMRMIAKEKLP-----KEFSITEGDFLSFEVPTSIDTIVSTY--- 114 (220)
T ss_dssp TCCSEEEEECCTTSHHHHHHHHTTC-EEEEECSCHHHHHHHHHHSC-----TTCCEESCCSSSCCCCSCCSEEEEES---
T ss_pred cCCCeEEEeCCCCCHHHHHHHhCCC-eEEEEeCCHHHHHHHHHhCC-----CceEEEeCChhhcCCCCCeEEEEECc---
Confidence 4788999999999999999999866 99999999 99998887753 45899999999987778999999976
Q ss_pred hhcchhhHHH--HHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhh------------hhccCCCCcchhHHHHH
Q 014247 190 MLLYESMLGS--VITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDF------------WRNVYGIDMSAMMPLAK 255 (428)
Q Consensus 190 ~l~~~~~~~~--~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~l~~~l~ 255 (428)
.+++..+... +++++.++|||||.+++..... ............ ....+.++.+.+..+++
T Consensus 115 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 189 (220)
T 3hnr_A 115 AFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIF-----ADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFE 189 (220)
T ss_dssp CGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECB-----SSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHHH
T ss_pred chhcCChHHHHHHHHHHHHhcCCCCEEEEEeccc-----cChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHHHH
Confidence 5556555555 9999999999999999764221 111111110000 11123446789999999
Q ss_pred hcCCCCceEE
Q 014247 256 QCAFEEPSVE 265 (428)
Q Consensus 256 ~~Gf~~~~~~ 265 (428)
++||+.....
T Consensus 190 ~aGf~v~~~~ 199 (220)
T 3hnr_A 190 NNGFHVTFTR 199 (220)
T ss_dssp HTTEEEEEEE
T ss_pred HCCCEEEEee
Confidence 9999765444
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=2.3e-15 Score=136.57 Aligned_cols=144 Identities=15% Similarity=0.060 Sum_probs=101.9
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEEecch
Q 014247 110 FIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWMG 188 (428)
Q Consensus 110 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~~~~ 188 (428)
..++.+|||||||+|.++..+++.+. +|+|+|++ .+++.|++ .+. .+++++++|+.++..+++||+|++..
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~----~~~-~~~~~~~~d~~~~~~~~~~D~v~~~~-- 115 (218)
T 3ou2_A 44 GNIRGDVLELASGTGYWTRHLSGLAD-RVTALDGSAEMIAEAGR----HGL-DNVEFRQQDLFDWTPDRQWDAVFFAH-- 115 (218)
T ss_dssp TTSCSEEEEESCTTSHHHHHHHHHSS-EEEEEESCHHHHHHHGG----GCC-TTEEEEECCTTSCCCSSCEEEEEEES--
T ss_pred CCCCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHh----cCC-CCeEEEecccccCCCCCceeEEEEec--
Confidence 46778999999999999999999866 99999999 89988876 344 35999999999884458999999976
Q ss_pred hhhcchhh--HHHHHHHHhcccccCeEEEccCCeeeEee---cCC---ccc----hhhhhhhhhccCCCCcchhHHHHHh
Q 014247 189 YMLLYESM--LGSVITARDRWLKRGGLILPSYATLYMAP---VTH---PDR----YSESIDFWRNVYGIDMSAMMPLAKQ 256 (428)
Q Consensus 189 ~~l~~~~~--~~~~l~~~~~~LkpgG~lv~~~~~~~~~~---~~~---~~~----~~~~~~~~~~~~~~~~~~l~~~l~~ 256 (428)
.+++..+ ...+++++.++|+|||.+++......... ... ... ......++.....++...+..++++
T Consensus 116 -~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 194 (218)
T 3ou2_A 116 -WLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDSEPEVAVRRTLQDGRSFRIVKVFRSPAELTERLTA 194 (218)
T ss_dssp -CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCCC------------CEEEEECTTSCEEEEECCCCCHHHHHHHHHH
T ss_pred -hhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCccccchhhhcccccceeeecCCcchhhHhhcCCCHHHHHHHHHH
Confidence 4555444 58999999999999999987643221000 000 000 0000000101123467889999999
Q ss_pred cCCCCc
Q 014247 257 CAFEEP 262 (428)
Q Consensus 257 ~Gf~~~ 262 (428)
+||+..
T Consensus 195 aGf~v~ 200 (218)
T 3ou2_A 195 LGWSCS 200 (218)
T ss_dssp TTEEEE
T ss_pred CCCEEE
Confidence 999843
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.3e-15 Score=135.66 Aligned_cols=104 Identities=20% Similarity=0.305 Sum_probs=89.5
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc--C-CCceeEEEEec
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE--I-DEEVDVIISEW 186 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~--~-~~~~DlVvs~~ 186 (428)
.++.+|||+|||+|.++..+++.++.+|+|+|++ .+++.|++++..+++ ++++++++|+.++. . .++||+|+++.
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~fD~i~~~~ 121 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGL-SGATLRRGAVAAVVAAGTTSPVDLVLADP 121 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTC-SCEEEEESCHHHHHHHCCSSCCSEEEECC
T ss_pred CCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCC-CceEEEEccHHHHHhhccCCCccEEEECC
Confidence 5788999999999999998888888899999999 999999999999888 56999999998864 2 48999999976
Q ss_pred chhhhcc-hhhHHHHHHHHhc--ccccCeEEEccC
Q 014247 187 MGYMLLY-ESMLGSVITARDR--WLKRGGLILPSY 218 (428)
Q Consensus 187 ~~~~l~~-~~~~~~~l~~~~~--~LkpgG~lv~~~ 218 (428)
. +.+ ..+...++..+.+ +|+|||++++..
T Consensus 122 p---~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~ 153 (189)
T 3p9n_A 122 P---YNVDSADVDAILAALGTNGWTREGTVAVVER 153 (189)
T ss_dssp C---TTSCHHHHHHHHHHHHHSSSCCTTCEEEEEE
T ss_pred C---CCcchhhHHHHHHHHHhcCccCCCeEEEEEe
Confidence 3 333 3568889999988 999999999754
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.3e-15 Score=137.99 Aligned_cols=115 Identities=26% Similarity=0.333 Sum_probs=94.0
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC
Q 014247 97 TETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI 175 (428)
Q Consensus 97 ~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~ 175 (428)
...+.+.+...+ .++.+|||+|||+|.++..+++. .+|+|+|++ .+++.|++++..++ .+++++++|+.+++.
T Consensus 20 ~~~~~~~~~~~~--~~~~~vLdiG~G~G~~~~~l~~~--~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~~ 93 (243)
T 3d2l_A 20 YPEWVAWVLEQV--EPGKRIADIGCGTGTATLLLADH--YEVTGVDLSEEMLEIAQEKAMETN--RHVDFWVQDMRELEL 93 (243)
T ss_dssp HHHHHHHHHHHS--CTTCEEEEESCTTCHHHHHHTTT--SEEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCGGGCCC
T ss_pred HHHHHHHHHHHc--CCCCeEEEecCCCCHHHHHHhhC--CeEEEEECCHHHHHHHHHhhhhcC--CceEEEEcChhhcCC
Confidence 345666676665 45689999999999999999987 599999999 99999999988765 358999999999877
Q ss_pred CCceeEEEEec-chhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 176 DEEVDVIISEW-MGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 176 ~~~~DlVvs~~-~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
+++||+|++.. ..+.+....++..+++++.++|+|||.+++.
T Consensus 94 ~~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 136 (243)
T 3d2l_A 94 PEPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFD 136 (243)
T ss_dssp SSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 78999999853 2223333467889999999999999999874
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.4e-15 Score=142.55 Aligned_cols=111 Identities=16% Similarity=0.227 Sum_probs=89.2
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCC
Q 014247 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDE 177 (428)
Q Consensus 99 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~ 177 (428)
.+.+.+.... .++.+|||||||+|.++..+++.+. +|+|+|+| .+++.|+++.. +++++++|+.+++.++
T Consensus 39 ~~~~~l~~~~--~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~------~~~~~~~d~~~~~~~~ 109 (263)
T 3pfg_A 39 DLAALVRRHS--PKAASLLDVACGTGMHLRHLADSFG-TVEGLELSADMLAIARRRNP------DAVLHHGDMRDFSLGR 109 (263)
T ss_dssp HHHHHHHHHC--TTCCEEEEETCTTSHHHHHHTTTSS-EEEEEESCHHHHHHHHHHCT------TSEEEECCTTTCCCSC
T ss_pred HHHHHHHhhC--CCCCcEEEeCCcCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCC------CCEEEECChHHCCccC
Confidence 3344444443 4568999999999999999999876 89999999 99999887642 5899999999988789
Q ss_pred ceeEEEEec-chhhhcchhhHHHHHHHHhcccccCeEEEccC
Q 014247 178 EVDVIISEW-MGYMLLYESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 178 ~~DlVvs~~-~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
+||+|++.. ..+.+....++..+++++.++|+|||.+++..
T Consensus 110 ~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~ 151 (263)
T 3pfg_A 110 RFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVEP 151 (263)
T ss_dssp CEEEEEECTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred CcCEEEEcCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 999999864 33333333568899999999999999999863
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.6e-15 Score=140.34 Aligned_cols=139 Identities=14% Similarity=0.208 Sum_probs=106.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccc--cCC-CceeEEEEec
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDV--EID-EEVDVIISEW 186 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l--~~~-~~~DlVvs~~ 186 (428)
.++.+|||||||+|.++..+++.|. +|+|+|+| .+++.|+++ +.++.+|+.+. +++ ++||+|++..
T Consensus 40 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~---------~~~~~~d~~~~~~~~~~~~fD~i~~~~ 109 (240)
T 3dli_A 40 KGCRRVLDIGCGRGEFLELCKEEGI-ESIGVDINEDMIKFCEGK---------FNVVKSDAIEYLKSLPDKYLDGVMISH 109 (240)
T ss_dssp TTCSCEEEETCTTTHHHHHHHHHTC-CEEEECSCHHHHHHHHTT---------SEEECSCHHHHHHTSCTTCBSEEEEES
T ss_pred cCCCeEEEEeCCCCHHHHHHHhCCC-cEEEEECCHHHHHHHHhh---------cceeeccHHHHhhhcCCCCeeEEEECC
Confidence 5678999999999999999999877 79999999 898887654 78899998875 443 8999999976
Q ss_pred chhhhcchh--hHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhh---hccCCCCcchhHHHHHhcCCCC
Q 014247 187 MGYMLLYES--MLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFW---RNVYGIDMSAMMPLAKQCAFEE 261 (428)
Q Consensus 187 ~~~~l~~~~--~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~l~~~Gf~~ 261 (428)
++++.. ++..+++++.++|||||.+++..... ........+| .....++...+..+++++||+.
T Consensus 110 ---~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~ 178 (240)
T 3dli_A 110 ---FVEHLDPERLFELLSLCYSKMKYSSYIVIESPNP--------TSLYSLINFYIDPTHKKPVHPETLKFILEYLGFRD 178 (240)
T ss_dssp ---CGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECT--------TSHHHHHHHTTSTTCCSCCCHHHHHHHHHHHTCEE
T ss_pred ---chhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCc--------chhHHHHHHhcCccccccCCHHHHHHHHHHCCCeE
Confidence 444444 57999999999999999998754321 1111111222 2235567789999999999998
Q ss_pred ceEEeecCC
Q 014247 262 PSVETITGE 270 (428)
Q Consensus 262 ~~~~~~~~~ 270 (428)
..+..+.+.
T Consensus 179 ~~~~~~~~~ 187 (240)
T 3dli_A 179 VKIEFFEEC 187 (240)
T ss_dssp EEEEEECCC
T ss_pred EEEEEeccC
Confidence 887776653
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.62 E-value=5.2e-16 Score=145.61 Aligned_cols=151 Identities=21% Similarity=0.163 Sum_probs=110.1
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC-
Q 014247 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID- 176 (428)
Q Consensus 99 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~- 176 (428)
.+.+.+.+.+...++.+|||||||+|.++..+++.+. +|+|+|+| .+++.|+++. +++++++|+.+++++
T Consensus 21 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~-------~~~~~~~d~~~~~~~~ 92 (261)
T 3ege_A 21 RIVNAIINLLNLPKGSVIADIGAGTGGYSVALANQGL-FVYAVEPSIVMRQQAVVHP-------QVEWFTGYAENLALPD 92 (261)
T ss_dssp HHHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHTTTC-EEEEECSCHHHHHSSCCCT-------TEEEECCCTTSCCSCT
T ss_pred HHHHHHHHHhCCCCCCEEEEEcCcccHHHHHHHhCCC-EEEEEeCCHHHHHHHHhcc-------CCEEEECchhhCCCCC
Confidence 4566677776667889999999999999999999765 99999999 8887665432 599999999998875
Q ss_pred CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchh-----hhhhhhhccCCCCcchhH
Q 014247 177 EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYS-----ESIDFWRNVYGIDMSAMM 251 (428)
Q Consensus 177 ~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~ 251 (428)
++||+|++.. .+++..++..+++++.++|| ||.+++...... .....|. .....+ .....+...+.
T Consensus 93 ~~fD~v~~~~---~l~~~~~~~~~l~~~~~~Lk-gG~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 163 (261)
T 3ege_A 93 KSVDGVISIL---AIHHFSHLEKSFQEMQRIIR-DGTIVLLTFDIR----LAQRIWLYDYFPFLWEDA-LRFLPLDEQIN 163 (261)
T ss_dssp TCBSEEEEES---CGGGCSSHHHHHHHHHHHBC-SSCEEEEEECGG----GCCCCGGGGTCHHHHHHH-HTSCCHHHHHH
T ss_pred CCEeEEEEcc---hHhhccCHHHHHHHHHHHhC-CcEEEEEEcCCc----hhHHHHHHHHHHHHhhhh-hhhCCCHHHHH
Confidence 8999999976 56666789999999999999 997765432210 0011111 111111 12233456677
Q ss_pred HHHHhcCCCCceEEee
Q 014247 252 PLAKQCAFEEPSVETI 267 (428)
Q Consensus 252 ~~l~~~Gf~~~~~~~~ 267 (428)
+++++||..+.+..+
T Consensus 164 -~l~~aGF~~v~~~~~ 178 (261)
T 3ege_A 164 -LLQENTKRRVEAIPF 178 (261)
T ss_dssp -HHHHHHCSEEEEEEC
T ss_pred -HHHHcCCCceeEEEe
Confidence 999999998776654
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.62 E-value=6e-15 Score=135.29 Aligned_cols=148 Identities=18% Similarity=0.216 Sum_probs=109.5
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCC----CCcEEEEEcccccccCC-CceeEEEE
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNL----TDKVIVLHGRVEDVEID-EEVDVIIS 184 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~----~~~v~~~~~d~~~l~~~-~~~DlVvs 184 (428)
.++.+|||+|||+|.++..+++.+. +|+|+|++ .+++.|++++...++ ..++.++.+|+.+++.+ ++||+|++
T Consensus 29 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 107 (235)
T 3sm3_A 29 QEDDEILDIGCGSGKISLELASKGY-SVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVM 107 (235)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEEE
T ss_pred CCCCeEEEECCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEEE
Confidence 4788999999999999999999966 99999999 999999998877666 34689999999988764 88999999
Q ss_pred ecchhhhcchhhHH---HHHHHHhcccccCeEEEccCCeeeEeecCCccchhhh-hhhh--------------------h
Q 014247 185 EWMGYMLLYESMLG---SVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSES-IDFW--------------------R 240 (428)
Q Consensus 185 ~~~~~~l~~~~~~~---~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~-~~~~--------------------~ 240 (428)
.. .+.+..+.. .+++++.++|+|||.+++...... .....+... ...+ .
T Consensus 108 ~~---~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (235)
T 3sm3_A 108 QA---FLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQN----WHLKLYRKRYLHDFPITKEEGSFLARDPETGETEF 180 (235)
T ss_dssp ES---CGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCC----TTSHHHHHHHHHHHHHHCSTTEEEEECTTTCCEEE
T ss_pred cc---hhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcc----hhHHHHHHHhhhhccchhhhcceEecccccCCcce
Confidence 76 444444444 899999999999999987542210 000000000 0000 0
Q ss_pred ccCCCCcchhHHHHHhcCCCCceEEe
Q 014247 241 NVYGIDMSAMMPLAKQCAFEEPSVET 266 (428)
Q Consensus 241 ~~~~~~~~~l~~~l~~~Gf~~~~~~~ 266 (428)
..+.++.+.+..+++++||+...+..
T Consensus 181 ~~~~~~~~~l~~ll~~aGf~~~~~~~ 206 (235)
T 3sm3_A 181 IAHHFTEKELVFLLTDCRFEIDYFRV 206 (235)
T ss_dssp EEECBCHHHHHHHHHTTTEEEEEEEE
T ss_pred eeEeCCHHHHHHHHHHcCCEEEEEEe
Confidence 12346788999999999998876554
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.1e-15 Score=142.85 Aligned_cols=151 Identities=19% Similarity=0.256 Sum_probs=110.5
Q ss_pred HHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEE
Q 014247 104 IMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVI 182 (428)
Q Consensus 104 i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlV 182 (428)
+.+.+...++.+|||||||+|.++..+++.+. +|+|+|+| .|++.|+++. .++.++.+|+.+++++++||+|
T Consensus 49 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~fD~v 121 (279)
T 3ccf_A 49 LLQLLNPQPGEFILDLGCGTGQLTEKIAQSGA-EVLGTDNAATMIEKARQNY------PHLHFDVADARNFRVDKPLDAV 121 (279)
T ss_dssp HHHHHCCCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHC------TTSCEEECCTTTCCCSSCEEEE
T ss_pred HHHHhCCCCCCEEEEecCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHhhC------CCCEEEECChhhCCcCCCcCEE
Confidence 33444556788999999999999999999655 99999999 9999888764 3589999999998877899999
Q ss_pred EEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhh-----h------hccCCCCcchhH
Q 014247 183 ISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDF-----W------RNVYGIDMSAMM 251 (428)
Q Consensus 183 vs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~-----~------~~~~~~~~~~l~ 251 (428)
++.. .+++..++..+++++.++|+|||.+++..... -............ | .....++...+.
T Consensus 122 ~~~~---~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (279)
T 3ccf_A 122 FSNA---MLHWVKEPEAAIASIHQALKSGGRFVAEFGGK----GNIKYILEALYNALETLGIHNPQALNPWYFPSIGEYV 194 (279)
T ss_dssp EEES---CGGGCSCHHHHHHHHHHHEEEEEEEEEEEECT----TTTHHHHHHHHHHHHHHTCCCGGGGCCCCCCCHHHHH
T ss_pred EEcc---hhhhCcCHHHHHHHHHHhcCCCcEEEEEecCC----cchHHHHHHHHHHHHhcCCccccCcCceeCCCHHHHH
Confidence 9976 56666788999999999999999998753211 0000110000000 0 011234677899
Q ss_pred HHHHhcCCCCceEEeec
Q 014247 252 PLAKQCAFEEPSVETIT 268 (428)
Q Consensus 252 ~~l~~~Gf~~~~~~~~~ 268 (428)
.+++++||+...+....
T Consensus 195 ~~l~~aGf~~~~~~~~~ 211 (279)
T 3ccf_A 195 NILEKQGFDVTYAALFN 211 (279)
T ss_dssp HHHHHHTEEEEEEEEEE
T ss_pred HHHHHcCCEEEEEEEec
Confidence 99999999987766543
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.1e-15 Score=145.68 Aligned_cols=122 Identities=24% Similarity=0.269 Sum_probs=98.2
Q ss_pred hhhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCC---CcEEEEEcc
Q 014247 94 RVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLT---DKVIVLHGR 169 (428)
Q Consensus 94 ~~r~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~---~~v~~~~~d 169 (428)
..+...+.+.+...+...++.+|||||||+|.++..+++.|+ +|+|+|+| .+++.|++++...+.. .++.+..+|
T Consensus 39 ~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d 117 (293)
T 3thr_A 39 RSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEAN 117 (293)
T ss_dssp SCBCHHHHHHHHHHHHHTTCCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECC
T ss_pred cchHHHHHHHHHHHhcccCCCEEEEecCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecC
Confidence 445567777777776666789999999999999999999977 99999999 9999998876544322 358899999
Q ss_pred ccccc---C-CCceeEEEEecchhhhcchhh-------HHHHHHHHhcccccCeEEEccC
Q 014247 170 VEDVE---I-DEEVDVIISEWMGYMLLYESM-------LGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 170 ~~~l~---~-~~~~DlVvs~~~~~~l~~~~~-------~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
+.+++ + +++||+|++. +..+.+..+ +..+++++.++|||||++++..
T Consensus 118 ~~~~~~~~~~~~~fD~V~~~--g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (293)
T 3thr_A 118 WLTLDKDVPAGDGFDAVICL--GNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH 175 (293)
T ss_dssp GGGHHHHSCCTTCEEEEEEC--TTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred hhhCccccccCCCeEEEEEc--ChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 98876 3 4899999995 124444444 8999999999999999999754
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=5.6e-16 Score=143.32 Aligned_cols=116 Identities=22% Similarity=0.259 Sum_probs=92.2
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc--C
Q 014247 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE--I 175 (428)
Q Consensus 99 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~--~ 175 (428)
.+.+++.+.+ ..+|.+|||||||+|..+..+++.+..+|+|||++ .+++.|+++....+. ++.++.+|+.++. +
T Consensus 48 ~~m~~~a~~~-~~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~~--~~~~~~~~a~~~~~~~ 124 (236)
T 3orh_A 48 PYMHALAAAA-SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTH--KVIPLKGLWEDVAPTL 124 (236)
T ss_dssp HHHHHHHHHH-TTTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCSS--EEEEEESCHHHHGGGS
T ss_pred HHHHHHHHhh-ccCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCCC--ceEEEeehHHhhcccc
Confidence 3444444443 26788999999999999999998866699999999 999999998877654 5889999987753 2
Q ss_pred -CCceeEEEEecc--hhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 176 -DEEVDVIISEWM--GYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 176 -~~~~DlVvs~~~--~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
.++||.|+...+ ...+.+..+...+++++.|+|||||++++.
T Consensus 125 ~~~~FD~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~ 169 (236)
T 3orh_A 125 PDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC 169 (236)
T ss_dssp CTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred cccCCceEEEeeeecccchhhhcchhhhhhhhhheeCCCCEEEEE
Confidence 378999987542 334556678999999999999999999864
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=6.6e-15 Score=140.43 Aligned_cols=143 Identities=13% Similarity=0.120 Sum_probs=97.8
Q ss_pred CCCCEEEEEcCCCcHHHHHH----HHc-CCCeE--EEEeCh-HHHHHHHHHHHHC-CCCC-cEEEEEccccccc------
Q 014247 111 IEGKVVVDVGCGTGILSIFC----AQA-GAKRV--YAVDAS-DIAVQANEVVKAN-NLTD-KVIVLHGRVEDVE------ 174 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~l----a~~-g~~~V--~giD~s-~~~~~a~~~~~~~-~~~~-~v~~~~~d~~~l~------ 174 (428)
.++.+|||||||+|.++..+ +.. ....| +|+|+| +|++.|++++... ++.+ ++.+..+++.+++
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 130 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEK 130 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTT
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccc
Confidence 45679999999999766432 222 22344 999999 9999999987653 3432 2344566666554
Q ss_pred C-CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhh-hhhhh------ccCCCC
Q 014247 175 I-DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSES-IDFWR------NVYGID 246 (428)
Q Consensus 175 ~-~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~-~~~~~------~~~~~~ 246 (428)
+ +++||+|++.. .+++..++..++++++++|||||++++.... ....+... ..+|. ....++
T Consensus 131 ~~~~~fD~V~~~~---~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (292)
T 2aot_A 131 KELQKWDFIHMIQ---MLYYVKDIPATLKFFHSLLGTNAKMLIIVVS-------GSSGWDKLWKKYGSRFPQDDLCQYIT 200 (292)
T ss_dssp TCCCCEEEEEEES---CGGGCSCHHHHHHHHHHTEEEEEEEEEEEEC-------TTSHHHHHHHHHGGGSCCCTTCCCCC
T ss_pred cCCCceeEEEEee---eeeecCCHHHHHHHHHHHcCCCcEEEEEEec-------CCccHHHHHHHHHHhccCCCcccCCC
Confidence 2 47899999876 7788888999999999999999999875211 11111111 11221 123456
Q ss_pred cchhHHHHHhcCCCCce
Q 014247 247 MSAMMPLAKQCAFEEPS 263 (428)
Q Consensus 247 ~~~l~~~l~~~Gf~~~~ 263 (428)
...+..+++++||+...
T Consensus 201 ~~~~~~~l~~aGf~~~~ 217 (292)
T 2aot_A 201 SDDLTQMLDNLGLKYEC 217 (292)
T ss_dssp HHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHHCCCceEE
Confidence 77899999999998654
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.61 E-value=1.2e-14 Score=135.22 Aligned_cols=110 Identities=26% Similarity=0.413 Sum_probs=91.2
Q ss_pred hccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEE
Q 014247 106 QNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIIS 184 (428)
Q Consensus 106 ~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs 184 (428)
......++.+|||+|||+|.++..+++.|. +|+|+|+| .+++.|++++...+. ++.++++|+.+++.+++||+|++
T Consensus 35 ~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~fD~v~~ 111 (252)
T 1wzn_A 35 KEDAKREVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLEIAFKNEFDAVTM 111 (252)
T ss_dssp HHTCSSCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC--CCEEEESCGGGCCCCSCEEEEEE
T ss_pred HHhcccCCCEEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHhcCC--ceEEEECChhhcccCCCccEEEE
Confidence 333345678999999999999999999876 89999999 999999999887765 58999999999887789999998
Q ss_pred ecchhhhcchhhHHHHHHHHhcccccCeEEEccC
Q 014247 185 EWMGYMLLYESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 185 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
......+....++..+++++.++|+|||.+++..
T Consensus 112 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~ 145 (252)
T 1wzn_A 112 FFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDF 145 (252)
T ss_dssp CSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEec
Confidence 5322233344568899999999999999998754
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=6.9e-15 Score=130.31 Aligned_cols=104 Identities=20% Similarity=0.262 Sum_probs=85.5
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc--CCCceeEEEEecc
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE--IDEEVDVIISEWM 187 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~--~~~~~DlVvs~~~ 187 (428)
.++.+|||+|||+|.++..+++. ..+|+|+|+| .+++.|++++..+++ +++++++++..++. .+++||+|+++.
T Consensus 21 ~~~~~vLDiGcG~G~~~~~la~~-~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~~~~~l~~~~~~~fD~v~~~~- 97 (185)
T 3mti_A 21 DDESIVVDATMGNGNDTAFLAGL-SKKVYAFDVQEQALGKTSQRLSDLGI-ENTELILDGHENLDHYVREPIRAAIFNL- 97 (185)
T ss_dssp CTTCEEEESCCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHHTC-CCEEEEESCGGGGGGTCCSCEEEEEEEE-
T ss_pred CCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCcHHHHHhhccCCcCEEEEeC-
Confidence 67899999999999999999998 5599999999 999999999999888 56999998888753 257899999873
Q ss_pred hhhhc-------chhhHHHHHHHHhcccccCeEEEcc
Q 014247 188 GYMLL-------YESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 188 ~~~l~-------~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
++... .......+++++.++|||||++++.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 134 (185)
T 3mti_A 98 GYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIM 134 (185)
T ss_dssp C-----------CHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEE
Confidence 22211 2345677889999999999999864
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1e-15 Score=143.26 Aligned_cols=152 Identities=14% Similarity=0.170 Sum_probs=108.9
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCC----------------------------
Q 014247 109 SFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNL---------------------------- 159 (428)
Q Consensus 109 ~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~---------------------------- 159 (428)
...++.+|||||||+|.++..+++.+..+|+|+|+| .+++.|++++..++.
T Consensus 53 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 132 (265)
T 2i62_A 53 GAVKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKL 132 (265)
T ss_dssp SSCCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHH
T ss_pred cccCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHh
Confidence 346778999999999999999998877789999999 999999888754321
Q ss_pred CCcE-EEEEcccccccC--C---CceeEEEEecchhhh-cchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccch
Q 014247 160 TDKV-IVLHGRVEDVEI--D---EEVDVIISEWMGYML-LYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRY 232 (428)
Q Consensus 160 ~~~v-~~~~~d~~~l~~--~---~~~DlVvs~~~~~~l-~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~ 232 (428)
..++ .++++|+.+... + ++||+|++....+.+ .+..++..+++++.++|||||.+++.... .. ..+
T Consensus 133 ~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~------~~-~~~ 205 (265)
T 2i62_A 133 RRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDAL------KS-SYY 205 (265)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEES------SC-CEE
T ss_pred hhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecC------CC-ceE
Confidence 0127 999999988643 3 689999997622211 15567899999999999999999875411 10 011
Q ss_pred hhhhhhhhccCCCCcchhHHHHHhcCCCCceEEeec
Q 014247 233 SESIDFWRNVYGIDMSAMMPLAKQCAFEEPSVETIT 268 (428)
Q Consensus 233 ~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~~ 268 (428)
... ..-...+.++.+.+..+++++||+...+....
T Consensus 206 ~~~-~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 240 (265)
T 2i62_A 206 MIG-EQKFSSLPLGWETVRDAVEEAGYTIEQFEVIS 240 (265)
T ss_dssp EET-TEEEECCCCCHHHHHHHHHHTTCEEEEEEEEC
T ss_pred EcC-CccccccccCHHHHHHHHHHCCCEEEEEEEec
Confidence 000 00001234566789999999999987776554
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.60 E-value=7.3e-15 Score=145.64 Aligned_cols=151 Identities=19% Similarity=0.264 Sum_probs=111.7
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHc--CCCeEEEEeCh-HHHHHHHHHHHHC-----C-C-CCcEEEEEcccccc------
Q 014247 110 FIEGKVVVDVGCGTGILSIFCAQA--GAKRVYAVDAS-DIAVQANEVVKAN-----N-L-TDKVIVLHGRVEDV------ 173 (428)
Q Consensus 110 ~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~giD~s-~~~~~a~~~~~~~-----~-~-~~~v~~~~~d~~~l------ 173 (428)
..++.+|||||||+|.++..+++. ...+|+|+|+| .+++.|++++..+ | + ..+++++++|+.++
T Consensus 81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~ 160 (383)
T 4fsd_A 81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPE 160 (383)
T ss_dssp GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSC
T ss_pred CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccC
Confidence 357889999999999999999886 23499999999 9999999887654 3 2 24699999999987
Q ss_pred cCC-CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhhcc--CCCCcchh
Q 014247 174 EID-EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNV--YGIDMSAM 250 (428)
Q Consensus 174 ~~~-~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l 250 (428)
+++ ++||+|+++. .+.+..++..+++++.++|||||++++...... .............|... ..+....+
T Consensus 161 ~~~~~~fD~V~~~~---~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (383)
T 4fsd_A 161 GVPDSSVDIVISNC---VCNLSTNKLALFKEIHRVLRDGGELYFSDVYAD---RRLSEAAQQDPILYGECLGGALYLEDF 234 (383)
T ss_dssp CCCTTCEEEEEEES---CGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEES---SCCCHHHHHCHHHHHTTCTTCCBHHHH
T ss_pred CCCCCCEEEEEEcc---chhcCCCHHHHHHHHHHHcCCCCEEEEEEeccc---cccCHhHhhhHHHhhcccccCCCHHHH
Confidence 554 7999999976 566667799999999999999999997643211 11111111111223221 23556889
Q ss_pred HHHHHhcCCCCceEEe
Q 014247 251 MPLAKQCAFEEPSVET 266 (428)
Q Consensus 251 ~~~l~~~Gf~~~~~~~ 266 (428)
..+++++||+.+.+..
T Consensus 235 ~~ll~~aGF~~v~~~~ 250 (383)
T 4fsd_A 235 RRLVAEAGFRDVRLVS 250 (383)
T ss_dssp HHHHHHTTCCCEEEEE
T ss_pred HHHHHHCCCceEEEEe
Confidence 9999999999876543
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.2e-14 Score=136.19 Aligned_cols=138 Identities=15% Similarity=0.246 Sum_probs=106.0
Q ss_pred hccCCC-CCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC---CCcee
Q 014247 106 QNQSFI-EGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI---DEEVD 180 (428)
Q Consensus 106 ~~~~~~-~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~---~~~~D 180 (428)
..+... ++.+|||+|||+|.++..+++.+..+|+|+|++ .+++.|++++..+++.++++++++|+.++.. .++||
T Consensus 42 ~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD 121 (259)
T 3lpm_A 42 KFSYLPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERAD 121 (259)
T ss_dssp HHCCCCSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEE
T ss_pred HHhcCCCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCcc
Confidence 334445 789999999999999999999866699999999 9999999999999999889999999998763 48999
Q ss_pred EEEEecchhhh-----c------------chhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhhccC
Q 014247 181 VIISEWMGYML-----L------------YESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVY 243 (428)
Q Consensus 181 lVvs~~~~~~l-----~------------~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (428)
+|++++..+.. . ....+..+++.+.++|+|||++++.. + .
T Consensus 122 ~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~------~---~-------------- 178 (259)
T 3lpm_A 122 IVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVH------R---P-------------- 178 (259)
T ss_dssp EEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEE------C---T--------------
T ss_pred EEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEE------c---H--------------
Confidence 99998632111 0 01346789999999999999998621 1 0
Q ss_pred CCCcchhHHHHHhcCCCCceEEee
Q 014247 244 GIDMSAMMPLAKQCAFEEPSVETI 267 (428)
Q Consensus 244 ~~~~~~l~~~l~~~Gf~~~~~~~~ 267 (428)
.....+...+.+.||....+..+
T Consensus 179 -~~~~~~~~~l~~~~~~~~~~~~v 201 (259)
T 3lpm_A 179 -ERLLDIIDIMRKYRLEPKRIQFV 201 (259)
T ss_dssp -TTHHHHHHHHHHTTEEEEEEEEE
T ss_pred -HHHHHHHHHHHHCCCceEEEEEe
Confidence 12345666777888876665544
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1e-14 Score=130.39 Aligned_cols=109 Identities=22% Similarity=0.322 Sum_probs=91.0
Q ss_pred HhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEE
Q 014247 105 MQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVII 183 (428)
Q Consensus 105 ~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVv 183 (428)
.+.+...++.+|||+|||+|.++..+++.+. +|+|+|++ .+++.|++++..+++.+ ++++.+|+.+++.+++||+|+
T Consensus 25 ~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~-~~~~~~d~~~~~~~~~~D~v~ 102 (199)
T 2xvm_A 25 LEAVKVVKPGKTLDLGCGNGRNSLYLAANGY-DVDAWDKNAMSIANVERIKSIENLDN-LHTRVVDLNNLTFDRQYDFIL 102 (199)
T ss_dssp HHHTTTSCSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCTT-EEEEECCGGGCCCCCCEEEEE
T ss_pred HHHhhccCCCeEEEEcCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHhCCCCC-cEEEEcchhhCCCCCCceEEE
Confidence 3444456788999999999999999999866 99999999 99999999988887754 999999999887778999999
Q ss_pred EecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 184 SEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 184 s~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
+..+.+.+ ...+...+++++.++|+|||.+++
T Consensus 103 ~~~~l~~~-~~~~~~~~l~~~~~~L~~gG~l~~ 134 (199)
T 2xvm_A 103 STVVLMFL-EAKTIPGLIANMQRCTKPGGYNLI 134 (199)
T ss_dssp EESCGGGS-CGGGHHHHHHHHHHTEEEEEEEEE
T ss_pred EcchhhhC-CHHHHHHHHHHHHHhcCCCeEEEE
Confidence 97632222 223689999999999999999775
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.60 E-value=1.3e-14 Score=130.75 Aligned_cols=112 Identities=21% Similarity=0.208 Sum_probs=93.1
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC-
Q 014247 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAG-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI- 175 (428)
Q Consensus 99 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~- 175 (428)
..+..+...+...++.+|||+|||+|.++..+++.+ ..+|+|+|++ .+++.|++++..+++ ++++++++|+.+...
T Consensus 27 ~i~~~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~ 105 (204)
T 3e05_A 27 EVRAVTLSKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVA-RNVTLVEAFAPEGLDD 105 (204)
T ss_dssp HHHHHHHHHTTCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTC-TTEEEEECCTTTTCTT
T ss_pred HHHHHHHHHcCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeCChhhhhhc
Confidence 344555666677889999999999999999999985 4699999999 999999999998888 569999999866433
Q ss_pred CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 176 DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 176 ~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
.++||+|++... +. ++..+++++.++|+|||++++.
T Consensus 106 ~~~~D~i~~~~~---~~---~~~~~l~~~~~~LkpgG~l~~~ 141 (204)
T 3e05_A 106 LPDPDRVFIGGS---GG---MLEEIIDAVDRRLKSEGVIVLN 141 (204)
T ss_dssp SCCCSEEEESCC---TT---CHHHHHHHHHHHCCTTCEEEEE
T ss_pred CCCCCEEEECCC---Cc---CHHHHHHHHHHhcCCCeEEEEE
Confidence 378999998652 21 5789999999999999999864
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.9e-15 Score=139.84 Aligned_cols=148 Identities=13% Similarity=0.154 Sum_probs=107.4
Q ss_pred HHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCcee
Q 014247 103 AIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVD 180 (428)
Q Consensus 103 ~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~D 180 (428)
.+...+...++.+|||||||+|.++..+++. +..+|+|+|+| .+++.|+++ ..+++++.+|+.+++.+++||
T Consensus 24 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~------~~~~~~~~~d~~~~~~~~~fD 97 (259)
T 2p35_A 24 DLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADR------LPNTNFGKADLATWKPAQKAD 97 (259)
T ss_dssp HHHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHH------STTSEEEECCTTTCCCSSCEE
T ss_pred HHHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh------CCCcEEEECChhhcCccCCcC
Confidence 4555556677889999999999999999987 23489999999 999988876 135899999999887558999
Q ss_pred EEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhh--hhhc---------cCCCCcch
Q 014247 181 VIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESID--FWRN---------VYGIDMSA 249 (428)
Q Consensus 181 lVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~--~~~~---------~~~~~~~~ 249 (428)
+|++.. .+++..++..+++++.++|+|||.+++........+. ...+..... .|.. ...++...
T Consensus 98 ~v~~~~---~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (259)
T 2p35_A 98 LLYANA---VFQWVPDHLAVLSQLMDQLESGGVLAVQMPDNLQEPT--HIAMHETADGGPWKDAFSGGGLRRKPLPPPSD 172 (259)
T ss_dssp EEEEES---CGGGSTTHHHHHHHHGGGEEEEEEEEEEEECCTTSHH--HHHHHHHHHHSTTGGGC-------CCCCCHHH
T ss_pred EEEEeC---chhhCCCHHHHHHHHHHhcCCCeEEEEEeCCCCCcHH--HHHHHHHhcCcchHHHhccccccccCCCCHHH
Confidence 999976 5666678999999999999999999976432110000 000111100 1221 12356778
Q ss_pred hHHHHHhcCCCC
Q 014247 250 MMPLAKQCAFEE 261 (428)
Q Consensus 250 l~~~l~~~Gf~~ 261 (428)
+..+++++||+.
T Consensus 173 ~~~~l~~aGf~v 184 (259)
T 2p35_A 173 YFNALSPKSSRV 184 (259)
T ss_dssp HHHHHGGGEEEE
T ss_pred HHHHHHhcCCce
Confidence 999999999963
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.59 E-value=1.7e-14 Score=129.60 Aligned_cols=140 Identities=17% Similarity=0.152 Sum_probs=105.0
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC-CceeEEEEecch
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID-EEVDVIISEWMG 188 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~-~~~DlVvs~~~~ 188 (428)
.++ +|||||||+|.++..+++.|. +|+|+|++ .+++.|+++....+. ++.++++|+.+++++ ++||+|++..
T Consensus 29 ~~~-~vLdiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~fD~v~~~~-- 102 (202)
T 2kw5_A 29 PQG-KILCLAEGEGRNACFLASLGY-EVTAVDQSSVGLAKAKQLAQEKGV--KITTVQSNLADFDIVADAWEGIVSIF-- 102 (202)
T ss_dssp CSS-EEEECCCSCTHHHHHHHTTTC-EEEEECSSHHHHHHHHHHHHHHTC--CEEEECCBTTTBSCCTTTCSEEEEEC--
T ss_pred CCC-CEEEECCCCCHhHHHHHhCCC-eEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcChhhcCCCcCCccEEEEEh--
Confidence 456 999999999999999999876 99999999 999999999887766 599999999988765 7899999853
Q ss_pred hhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhhccCCCCcchhHHHHHhcCCCCceEEe
Q 014247 189 YMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAMMPLAKQCAFEEPSVET 266 (428)
Q Consensus 189 ~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~ 266 (428)
......++..+++++.++|+|||.+++...... ...+... ......+.++...+..+++ ||+...++.
T Consensus 103 -~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~------~~~~~~~-~~~~~~~~~~~~~l~~~l~--Gf~v~~~~~ 170 (202)
T 2kw5_A 103 -CHLPSSLRQQLYPKVYQGLKPGGVFILEGFAPE------QLQYNTG-GPKDLDLLPKLETLQSELP--SLNWLIANN 170 (202)
T ss_dssp -CCCCHHHHHHHHHHHHTTCCSSEEEEEEEECTT------TGGGTSC-CSSSGGGCCCHHHHHHHCS--SSCEEEEEE
T ss_pred -hcCCHHHHHHHHHHHHHhcCCCcEEEEEEeccc------cccCCCC-CCCcceeecCHHHHHHHhc--CceEEEEEE
Confidence 233456789999999999999999987543211 1101000 0011134567788888887 998766543
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.59 E-value=4.7e-15 Score=139.81 Aligned_cols=161 Identities=19% Similarity=0.188 Sum_probs=114.2
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CC-CeEEEEeCh-H------HHHHHHHHHHHCCCCCcEEEEEcc--
Q 014247 101 RAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-GA-KRVYAVDAS-D------IAVQANEVVKANNLTDKVIVLHGR-- 169 (428)
Q Consensus 101 ~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~-~~V~giD~s-~------~~~~a~~~~~~~~~~~~v~~~~~d-- 169 (428)
...+...+...++.+|||||||+|.++..+++. |. .+|+|+|+| . +++.|++++..+++.++++++.+|
T Consensus 32 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 111 (275)
T 3bkx_A 32 RLAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNL 111 (275)
T ss_dssp HHHHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCT
T ss_pred HHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChh
Confidence 344455556678999999999999999999987 43 599999999 6 899999999888887789999998
Q ss_pred -cccccCC-CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhh----hhh-hh---
Q 014247 170 -VEDVEID-EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSE----SID-FW--- 239 (428)
Q Consensus 170 -~~~l~~~-~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~----~~~-~~--- 239 (428)
...++++ ++||+|++.. .+++..+...+++.+.++++|||.+++....... ........ ... .+
T Consensus 112 ~~~~~~~~~~~fD~v~~~~---~l~~~~~~~~~~~~~~~l~~~gG~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 185 (275)
T 3bkx_A 112 SDDLGPIADQHFDRVVLAH---SLWYFASANALALLFKNMAAVCDHVDVAEWSMQP---TALDQIGHLQAAMIQGLLYAI 185 (275)
T ss_dssp TTCCGGGTTCCCSEEEEES---CGGGSSCHHHHHHHHHHHTTTCSEEEEEEECSSC---SSGGGHHHHHHHHHHHHHHHH
T ss_pred hhccCCCCCCCEEEEEEcc---chhhCCCHHHHHHHHHHHhCCCCEEEEEEecCCC---CchhhhhHHHHHHHHHHHhhc
Confidence 3444443 7899999976 5555666677788888888889999875432210 01111100 000 00
Q ss_pred -----hc-cCCCCcchhHHHHHhcCCCCceEEee
Q 014247 240 -----RN-VYGIDMSAMMPLAKQCAFEEPSVETI 267 (428)
Q Consensus 240 -----~~-~~~~~~~~l~~~l~~~Gf~~~~~~~~ 267 (428)
.. ...++...+..+++++||+......+
T Consensus 186 ~~~~~~~~~~~~s~~~l~~~l~~aGf~~~~~~~~ 219 (275)
T 3bkx_A 186 APSDVANIRTLITPDTLAQIAHDNTWTYTAGTIV 219 (275)
T ss_dssp SCCTTCSCCCCCCHHHHHHHHHHHTCEEEECCCB
T ss_pred cccccccccccCCHHHHHHHHHHCCCeeEEEEEe
Confidence 01 12456788999999999988766555
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.59 E-value=2e-15 Score=137.67 Aligned_cols=151 Identities=18% Similarity=0.229 Sum_probs=106.3
Q ss_pred HHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccc---cC--
Q 014247 102 AAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDV---EI-- 175 (428)
Q Consensus 102 ~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l---~~-- 175 (428)
..+...+...++.+|||||||+|.++..+++.+. +|+|+|++ .+++.|+++ .++.++.+|+.++ +.
T Consensus 42 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~ 113 (227)
T 3e8s_A 42 QAILLAILGRQPERVLDLGCGEGWLLRALADRGI-EAVGVDGDRTLVDAARAA-------GAGEVHLASYAQLAEAKVPV 113 (227)
T ss_dssp HHHHHHHHHTCCSEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHT-------CSSCEEECCHHHHHTTCSCC
T ss_pred HHHHHHhhcCCCCEEEEeCCCCCHHHHHHHHCCC-EEEEEcCCHHHHHHHHHh-------cccccchhhHHhhccccccc
Confidence 3444444445679999999999999999999876 89999999 899888776 2478888888887 32
Q ss_pred CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecC-Cccchhhhhhhhh---------ccCCC
Q 014247 176 DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVT-HPDRYSESIDFWR---------NVYGI 245 (428)
Q Consensus 176 ~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~-~~~~~~~~~~~~~---------~~~~~ 245 (428)
..+||+|++.. .++ ..++..+++++.++|+|||.+++........... ....+.. ..|. ..+.+
T Consensus 114 ~~~fD~v~~~~---~l~-~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 187 (227)
T 3e8s_A 114 GKDYDLICANF---ALL-HQDIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWRE--ESFAGFAGDWQPMPWYFR 187 (227)
T ss_dssp CCCEEEEEEES---CCC-SSCCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEE--ECCTTSSSCCCCEEEEEC
T ss_pred CCCccEEEECc---hhh-hhhHHHHHHHHHHHhCCCeEEEEEecCccccCccccccccch--hhhhccccCcccceEEEe
Confidence 35699999976 444 5668899999999999999999865432211100 0000000 0011 11234
Q ss_pred CcchhHHHHHhcCCCCceEEe
Q 014247 246 DMSAMMPLAKQCAFEEPSVET 266 (428)
Q Consensus 246 ~~~~l~~~l~~~Gf~~~~~~~ 266 (428)
+.+.+..+++++||+...+..
T Consensus 188 ~~~~~~~~l~~aGf~~~~~~~ 208 (227)
T 3e8s_A 188 TLASWLNALDMAGLRLVSLQE 208 (227)
T ss_dssp CHHHHHHHHHHTTEEEEEEEC
T ss_pred cHHHHHHHHHHcCCeEEEEec
Confidence 678899999999998876654
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=3.1e-15 Score=138.13 Aligned_cols=115 Identities=20% Similarity=0.219 Sum_probs=89.4
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccc--cCC-
Q 014247 101 RAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDV--EID- 176 (428)
Q Consensus 101 ~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l--~~~- 176 (428)
.+.+...+ ..++.+|||||||+|.++..+++.+..+|+|+|+| .|++.|+++....+ .+++++++|+.++ +++
T Consensus 50 ~~~l~~~~-~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~ 126 (236)
T 1zx0_A 50 MHALAAAA-SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTLPD 126 (236)
T ss_dssp HHHHHHHH-TTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGGSCT
T ss_pred HHHHHhhc-CCCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcC--CCeEEEecCHHHhhcccCC
Confidence 33443333 35778999999999999999988766699999999 99999999877655 4699999999988 664
Q ss_pred CceeEEEEecch--hhhcchhhHHHHHHHHhcccccCeEEEccC
Q 014247 177 EEVDVIISEWMG--YMLLYESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 177 ~~~DlVvs~~~~--~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
++||+|+++.+. ....+......+++++.++|||||++++..
T Consensus 127 ~~fD~V~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~ 170 (236)
T 1zx0_A 127 GHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp TCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred CceEEEEECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEe
Confidence 789999983211 112233456688999999999999998654
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.2e-14 Score=130.93 Aligned_cols=135 Identities=23% Similarity=0.291 Sum_probs=106.1
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCC
Q 014247 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDE 177 (428)
Q Consensus 99 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~ 177 (428)
...+.+...+ .++.+|||+|||+|.++..+++.+..+|+|+|++ .+++.|++++..+++.+ ++++++|+.+.. ++
T Consensus 49 ~~~~~l~~~~--~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~-~~ 124 (205)
T 3grz_A 49 LAMLGIERAM--VKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYD-IALQKTSLLADV-DG 124 (205)
T ss_dssp HHHHHHHHHC--SSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCC-CEEEESSTTTTC-CS
T ss_pred HHHHHHHHhc--cCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCc-eEEEeccccccC-CC
Confidence 3444444443 5788999999999999999999877799999999 99999999999998876 999999997753 48
Q ss_pred ceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhhccCCCCcchhHHHHHhc
Q 014247 178 EVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAMMPLAKQC 257 (428)
Q Consensus 178 ~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 257 (428)
+||+|+++.. + ..+..+++++.++|+|||.+++..... -+...+..+++++
T Consensus 125 ~fD~i~~~~~---~---~~~~~~l~~~~~~L~~gG~l~~~~~~~-----------------------~~~~~~~~~~~~~ 175 (205)
T 3grz_A 125 KFDLIVANIL---A---EILLDLIPQLDSHLNEDGQVIFSGIDY-----------------------LQLPKIEQALAEN 175 (205)
T ss_dssp CEEEEEEESC---H---HHHHHHGGGSGGGEEEEEEEEEEEEEG-----------------------GGHHHHHHHHHHT
T ss_pred CceEEEECCc---H---HHHHHHHHHHHHhcCCCCEEEEEecCc-----------------------ccHHHHHHHHHHc
Confidence 9999999752 2 235788999999999999998642110 1245677788899
Q ss_pred CCCCceEEe
Q 014247 258 AFEEPSVET 266 (428)
Q Consensus 258 Gf~~~~~~~ 266 (428)
||+...+..
T Consensus 176 Gf~~~~~~~ 184 (205)
T 3grz_A 176 SFQIDLKMR 184 (205)
T ss_dssp TEEEEEEEE
T ss_pred CCceEEeec
Confidence 998765543
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.5e-14 Score=130.64 Aligned_cols=110 Identities=15% Similarity=0.196 Sum_probs=91.5
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccc-ccCCC
Q 014247 100 YRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVED-VEIDE 177 (428)
Q Consensus 100 ~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~-l~~~~ 177 (428)
....+...+...++.+|||+|||+|.++..+++. ..+|+|+|++ .+++.|+++++.+++.++++++++|+.+ ++...
T Consensus 43 ~~~~~l~~l~~~~~~~vLDlGcG~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~ 121 (204)
T 3njr_A 43 MRALTLAALAPRRGELLWDIGGGSGSVSVEWCLA-GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLP 121 (204)
T ss_dssp HHHHHHHHHCCCTTCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSC
T ss_pred HHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCC
Confidence 3444555556678899999999999999999998 4599999999 9999999999999998679999999988 44346
Q ss_pred ceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccC
Q 014247 178 EVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 178 ~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
+||+|++.. .+ +.+ +++++.++|+|||++++..
T Consensus 122 ~~D~v~~~~---~~----~~~-~l~~~~~~LkpgG~lv~~~ 154 (204)
T 3njr_A 122 LPEAVFIGG---GG----SQA-LYDRLWEWLAPGTRIVANA 154 (204)
T ss_dssp CCSEEEECS---CC----CHH-HHHHHHHHSCTTCEEEEEE
T ss_pred CCCEEEECC---cc----cHH-HHHHHHHhcCCCcEEEEEe
Confidence 899999854 22 355 8999999999999998653
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.58 E-value=5.4e-15 Score=140.74 Aligned_cols=147 Identities=14% Similarity=0.163 Sum_probs=102.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHC-----------------CCC------------
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKAN-----------------NLT------------ 160 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~-----------------~~~------------ 160 (428)
.++.+|||||||+|.++..++..+..+|+|+|+| .|++.|++++... +..
T Consensus 70 ~~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 149 (289)
T 2g72_A 70 VSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA 149 (289)
T ss_dssp SCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred CCCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence 4778999999999997666655444599999999 9999988865421 100
Q ss_pred CcEEEEEccccc-ccC------CCceeEEEEecchhhhcc----hhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCc
Q 014247 161 DKVIVLHGRVED-VEI------DEEVDVIISEWMGYMLLY----ESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHP 229 (428)
Q Consensus 161 ~~v~~~~~d~~~-l~~------~~~~DlVvs~~~~~~l~~----~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~ 229 (428)
..+.++.+|+.+ +++ +++||+|++.. ++++ ..++..+++++.++|||||.+++.... . .
T Consensus 150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~---~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~------~-~ 219 (289)
T 2g72_A 150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAF---CLEAVSPDLASFQRALDHITTLLRPGGHLLLIGAL------E-E 219 (289)
T ss_dssp HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEES---CHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEE------S-C
T ss_pred hhceEEecccCCCCCccccccCCCCCCEEEehh---hhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEec------C-c
Confidence 025778889887 443 25699999976 4444 567899999999999999999975210 0 0
Q ss_pred cchhhhhhhhhccCCCCcchhHHHHHhcCCCCceEEeec
Q 014247 230 DRYSESIDFWRNVYGIDMSAMMPLAKQCAFEEPSVETIT 268 (428)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~~ 268 (428)
..+... ........++.+.+..+++++||+...+..+.
T Consensus 220 ~~~~~~-~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~ 257 (289)
T 2g72_A 220 SWYLAG-EARLTVVPVSEEEVREALVRSGYKVRDLRTYI 257 (289)
T ss_dssp CEEEET-TEEEECCCCCHHHHHHHHHHTTEEEEEEEEEE
T ss_pred ceEEcC-CeeeeeccCCHHHHHHHHHHcCCeEEEeeEee
Confidence 000000 00001345678899999999999987766554
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.6e-15 Score=140.43 Aligned_cols=106 Identities=23% Similarity=0.190 Sum_probs=86.5
Q ss_pred HHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC
Q 014247 98 ETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID 176 (428)
Q Consensus 98 ~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~ 176 (428)
..+.+.|.... ..+.+|||||||+|.++..+++.+. +|+|+|+| .|++.|++. .+++++++|+++++++
T Consensus 27 ~~l~~~l~~~~--~~~~~vLDvGcGtG~~~~~l~~~~~-~v~gvD~s~~ml~~a~~~-------~~v~~~~~~~e~~~~~ 96 (257)
T 4hg2_A 27 RALFRWLGEVA--PARGDALDCGCGSGQASLGLAEFFE-RVHAVDPGEAQIRQALRH-------PRVTYAVAPAEDTGLP 96 (257)
T ss_dssp HHHHHHHHHHS--SCSSEEEEESCTTTTTHHHHHTTCS-EEEEEESCHHHHHTCCCC-------TTEEEEECCTTCCCCC
T ss_pred HHHHHHHHHhc--CCCCCEEEEcCCCCHHHHHHHHhCC-EEEEEeCcHHhhhhhhhc-------CCceeehhhhhhhccc
Confidence 34556666654 3457999999999999999999875 89999999 998776532 3699999999999886
Q ss_pred -CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 177 -EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 177 -~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
++||+|++.. .+++. +++.+++++.|+|||||+|++.
T Consensus 97 ~~sfD~v~~~~---~~h~~-~~~~~~~e~~rvLkpgG~l~~~ 134 (257)
T 4hg2_A 97 PASVDVAIAAQ---AMHWF-DLDRFWAELRRVARPGAVFAAV 134 (257)
T ss_dssp SSCEEEEEECS---CCTTC-CHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCcccEEEEee---ehhHh-hHHHHHHHHHHHcCCCCEEEEE
Confidence 8999999965 45444 4888999999999999998753
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.4e-14 Score=137.18 Aligned_cols=137 Identities=17% Similarity=0.154 Sum_probs=105.7
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCce
Q 014247 101 RAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEV 179 (428)
Q Consensus 101 ~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~ 179 (428)
+..+...+ .++.+|||+|||+|.++..+++.++.+|+|+|+| .+++.|+++++.+++.++++++++|+.++...++|
T Consensus 116 ~~~l~~~~--~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~f 193 (278)
T 2frn_A 116 RVRMAKVA--KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIA 193 (278)
T ss_dssp HHHHHHHC--CTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCE
T ss_pred HHHHHHhC--CCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCc
Confidence 44444443 5689999999999999999999987689999999 99999999999999988899999999998777899
Q ss_pred eEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhhccCCCCcchhHHHHHhcCC
Q 014247 180 DVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAMMPLAKQCAF 259 (428)
Q Consensus 180 DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf 259 (428)
|+|+++... ....++..+.++|+|||.+++...... .. ...-....+...+.++||
T Consensus 194 D~Vi~~~p~-------~~~~~l~~~~~~LkpgG~l~~~~~~~~-------~~----------~~~~~~~~i~~~~~~~G~ 249 (278)
T 2frn_A 194 DRILMGYVV-------RTHEFIPKALSIAKDGAIIHYHNTVPE-------KL----------MPREPFETFKRITKEYGY 249 (278)
T ss_dssp EEEEECCCS-------SGGGGHHHHHHHEEEEEEEEEEEEEEG-------GG----------TTTTTHHHHHHHHHHTTC
T ss_pred cEEEECCch-------hHHHHHHHHHHHCCCCeEEEEEEeecc-------cc----------ccccHHHHHHHHHHHcCC
Confidence 999986531 125677788899999999986543210 00 011124566777888898
Q ss_pred CCce
Q 014247 260 EEPS 263 (428)
Q Consensus 260 ~~~~ 263 (428)
....
T Consensus 250 ~~~~ 253 (278)
T 2frn_A 250 DVEK 253 (278)
T ss_dssp EEEE
T ss_pred eeEE
Confidence 7544
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=5.9e-15 Score=137.74 Aligned_cols=153 Identities=12% Similarity=0.006 Sum_probs=105.9
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHH----------CC------CCCc
Q 014247 100 YRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKA----------NN------LTDK 162 (428)
Q Consensus 100 ~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~----------~~------~~~~ 162 (428)
+.+.+.......++.+|||+|||+|..+..+|+.|+ +|+|||+| .+++.|+++... ++ ...+
T Consensus 56 l~~~~~~~~~~~~~~~vLD~GCG~G~~~~~La~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (252)
T 2gb4_A 56 LKKHLDTFLKGQSGLRVFFPLCGKAIEMKWFADRGH-TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGS 134 (252)
T ss_dssp HHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSS
T ss_pred HHHHHHHhccCCCCCeEEEeCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCc
Confidence 333443333335778999999999999999999988 89999999 999998765421 00 1246
Q ss_pred EEEEEcccccccCC--CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhh
Q 014247 163 VIVLHGRVEDVEID--EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWR 240 (428)
Q Consensus 163 v~~~~~d~~~l~~~--~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (428)
++++++|+.+++.. ++||+|++....+.+ ...+...+++++.++|||||++++.+... . .... -.
T Consensus 135 i~~~~~D~~~l~~~~~~~FD~V~~~~~l~~l-~~~~~~~~l~~~~~~LkpGG~l~l~~~~~-----~-~~~~------~g 201 (252)
T 2gb4_A 135 ISLYCCSIFDLPRANIGKFDRIWDRGALVAI-NPGDHDRYADIILSLLRKEFQYLVAVLSY-----D-PTKH------AG 201 (252)
T ss_dssp EEEEESCTTTGGGGCCCCEEEEEESSSTTTS-CGGGHHHHHHHHHHTEEEEEEEEEEEEEC-----C-TTSC------CC
T ss_pred eEEEECccccCCcccCCCEEEEEEhhhhhhC-CHHHHHHHHHHHHHHcCCCeEEEEEEEec-----C-CccC------CC
Confidence 99999999998764 799999986533333 34557889999999999999986432110 0 0000 01
Q ss_pred ccCCCCcchhHHHHHhcCCCCceEEee
Q 014247 241 NVYGIDMSAMMPLAKQCAFEEPSVETI 267 (428)
Q Consensus 241 ~~~~~~~~~l~~~l~~~Gf~~~~~~~~ 267 (428)
..+.++.+++..++.. +|+...++.+
T Consensus 202 ~~~~~~~~el~~~l~~-~f~v~~~~~~ 227 (252)
T 2gb4_A 202 PPFYVPSAELKRLFGT-KCSMQCLEEV 227 (252)
T ss_dssp SSCCCCHHHHHHHHTT-TEEEEEEEEE
T ss_pred CCCCCCHHHHHHHhhC-CeEEEEEecc
Confidence 1234567788888876 5876655543
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.7e-14 Score=138.62 Aligned_cols=160 Identities=14% Similarity=0.158 Sum_probs=116.0
Q ss_pred HHHhccCC--CCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeChHHHHHHHHHHHHCCCCCcEEEEEcccccccCCCce
Q 014247 103 AIMQNQSF--IEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEV 179 (428)
Q Consensus 103 ~i~~~~~~--~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~ 179 (428)
.+.+.+.. .++.+|||||||+|.++..+++. +..+++++|++.+++.|++++...++.++++++.+|+.+.+.+..|
T Consensus 154 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 233 (335)
T 2r3s_A 154 LIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAGSAFEVDYGNDY 233 (335)
T ss_dssp HHHHHHTC--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHHTCGGGEEEEESCTTTSCCCSCE
T ss_pred HHHHhcccccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCC
Confidence 34444444 67789999999999999999987 2349999999999999999998888888899999999887666679
Q ss_pred eEEEEecchhhhcch--hhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhh----h-ccCCCCcchhHH
Q 014247 180 DVIISEWMGYMLLYE--SMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFW----R-NVYGIDMSAMMP 252 (428)
Q Consensus 180 DlVvs~~~~~~l~~~--~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~l~~ 252 (428)
|+|++.. .+++. .+...+++++.++|+|||++++......... ...........+ . ....++.+++..
T Consensus 234 D~v~~~~---~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ 308 (335)
T 2r3s_A 234 DLVLLPN---FLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDR--ITPPDAAAFSLVMLATTPNGDAYTFAEYES 308 (335)
T ss_dssp EEEEEES---CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTS--SCSHHHHHHHHHHHHHSSSCCCCCHHHHHH
T ss_pred cEEEEcc---hhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCc--CCchHHHHHHHHHHeeCCCCCcCCHHHHHH
Confidence 9999866 44444 4467999999999999998887543221000 000111111111 1 234467889999
Q ss_pred HHHhcCCCCceEEee
Q 014247 253 LAKQCAFEEPSVETI 267 (428)
Q Consensus 253 ~l~~~Gf~~~~~~~~ 267 (428)
+++++||+...+...
T Consensus 309 ll~~aGf~~~~~~~~ 323 (335)
T 2r3s_A 309 MFSNAGFSHSQLHSL 323 (335)
T ss_dssp HHHHTTCSEEEEECC
T ss_pred HHHHCCCCeeeEEEC
Confidence 999999998776544
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.57 E-value=5.4e-15 Score=133.25 Aligned_cols=104 Identities=18% Similarity=0.217 Sum_probs=87.3
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCC-CcEEEEEcccccccC---CCc-eeEEEEe
Q 014247 112 EGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLT-DKVIVLHGRVEDVEI---DEE-VDVIISE 185 (428)
Q Consensus 112 ~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~-~~v~~~~~d~~~l~~---~~~-~DlVvs~ 185 (428)
++.+|||+|||+|.++..++..++.+|+|+|+| .+++.|++++..+++. ++++++++|+.++.. .++ ||+|+++
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 132 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD 132 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEEC
Confidence 678999999999999999888877799999999 9999999999999884 569999999987633 367 9999997
Q ss_pred cchhhhcchhhHHHHHHHH--hcccccCeEEEccCC
Q 014247 186 WMGYMLLYESMLGSVITAR--DRWLKRGGLILPSYA 219 (428)
Q Consensus 186 ~~~~~l~~~~~~~~~l~~~--~~~LkpgG~lv~~~~ 219 (428)
.. + +......+++.+ .++|+|||.+++...
T Consensus 133 ~~---~-~~~~~~~~l~~~~~~~~LkpgG~l~i~~~ 164 (201)
T 2ift_A 133 PP---F-HFNLAEQAISLLCENNWLKPNALIYVETE 164 (201)
T ss_dssp CC---S-SSCHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred CC---C-CCccHHHHHHHHHhcCccCCCcEEEEEEC
Confidence 63 2 245577888888 778999999987543
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.3e-14 Score=131.15 Aligned_cols=116 Identities=19% Similarity=0.212 Sum_probs=93.0
Q ss_pred HHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC
Q 014247 98 ETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID 176 (428)
Q Consensus 98 ~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~ 176 (428)
..+.+.+...+ .++.+|||+|||+|.++..+++.|..+|+|+|++ .+++.|+++... ..++.++++|+.+++++
T Consensus 30 ~~~~~~l~~~~--~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~---~~~i~~~~~d~~~~~~~ 104 (215)
T 2pxx_A 30 SSFRALLEPEL--RPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAH---VPQLRWETMDVRKLDFP 104 (215)
T ss_dssp HHHHHHHGGGC--CTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTT---CTTCEEEECCTTSCCSC
T ss_pred HHHHHHHHHhc--CCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhccc---CCCcEEEEcchhcCCCC
Confidence 34566666554 6778999999999999999999877689999999 999999887653 24699999999988765
Q ss_pred -CceeEEEEecchhhhc------------chhhHHHHHHHHhcccccCeEEEccC
Q 014247 177 -EEVDVIISEWMGYMLL------------YESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 177 -~~~DlVvs~~~~~~l~------------~~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
++||+|++..+.+.+. +..+...+++++.++|+|||.+++..
T Consensus 105 ~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 159 (215)
T 2pxx_A 105 SASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMT 159 (215)
T ss_dssp SSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEe
Confidence 7899999976433332 24467899999999999999998643
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=3.2e-14 Score=134.30 Aligned_cols=103 Identities=23% Similarity=0.283 Sum_probs=87.1
Q ss_pred ccCCCCCCEEEEEcCCCcHHH-HHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEE
Q 014247 107 NQSFIEGKVVVDVGCGTGILS-IFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIIS 184 (428)
Q Consensus 107 ~~~~~~~~~VLDiGcGtG~ls-~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs 184 (428)
.+...++.+|||||||+|.++ ..+|+....+|+|+|++ ++++.|+++++..++ ++++++++|+.+++ +++||+|++
T Consensus 117 la~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl-~~v~~v~gDa~~l~-d~~FDvV~~ 194 (298)
T 3fpf_A 117 LGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGV-DGVNVITGDETVID-GLEFDVLMV 194 (298)
T ss_dssp HTTCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTC-CSEEEEESCGGGGG-GCCCSEEEE
T ss_pred HcCCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCC-CCeEEEECchhhCC-CCCcCEEEE
Confidence 456788999999999998765 55666433499999999 999999999998888 78999999999886 589999997
Q ss_pred ecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 185 EWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 185 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
.. . ..+...+++++.++|||||++++.
T Consensus 195 ~a---~---~~d~~~~l~el~r~LkPGG~Lvv~ 221 (298)
T 3fpf_A 195 AA---L---AEPKRRVFRNIHRYVDTETRIIYR 221 (298)
T ss_dssp CT---T---CSCHHHHHHHHHHHCCTTCEEEEE
T ss_pred CC---C---ccCHHHHHHHHHHHcCCCcEEEEE
Confidence 54 2 356889999999999999999964
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.56 E-value=1.4e-14 Score=127.33 Aligned_cols=105 Identities=14% Similarity=0.202 Sum_probs=86.7
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccc-c-CCCceeEEEEec
Q 014247 110 FIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDV-E-IDEEVDVIISEW 186 (428)
Q Consensus 110 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l-~-~~~~~DlVvs~~ 186 (428)
..++.+|||+|||+|.++..+++.+..+|+|+|++ .+++.|++++..+++.++++++++|+.+. + .+++||+|+++.
T Consensus 29 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~ 108 (177)
T 2esr_A 29 YFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDP 108 (177)
T ss_dssp CCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECC
T ss_pred hcCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECC
Confidence 46788999999999999999999877799999999 99999999999988877899999999873 2 246799999975
Q ss_pred chhhhcchhhHHHHHHHHh--cccccCeEEEccC
Q 014247 187 MGYMLLYESMLGSVITARD--RWLKRGGLILPSY 218 (428)
Q Consensus 187 ~~~~l~~~~~~~~~l~~~~--~~LkpgG~lv~~~ 218 (428)
.. +......+++.+. ++|+|||.+++..
T Consensus 109 ~~----~~~~~~~~~~~l~~~~~L~~gG~l~~~~ 138 (177)
T 2esr_A 109 PY----AKETIVATIEALAAKNLLSEQVMVVCET 138 (177)
T ss_dssp SS----HHHHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred CC----CcchHHHHHHHHHhCCCcCCCcEEEEEE
Confidence 31 1233566666666 9999999998753
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.2e-14 Score=136.16 Aligned_cols=102 Identities=25% Similarity=0.322 Sum_probs=89.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEEecchh
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWMGY 189 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~~~~~ 189 (428)
.++.+|||+|||+|.++..+++.|. +|+|+|+| .+++.|++++..+++ +++++++|+.+++.+++||+|++..+.+
T Consensus 119 ~~~~~vLD~GcG~G~~~~~l~~~g~-~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~fD~i~~~~~~~ 195 (286)
T 3m70_A 119 ISPCKVLDLGCGQGRNSLYLSLLGY-DVTSWDHNENSIAFLNETKEKENL--NISTALYDINAANIQENYDFIVSTVVFM 195 (286)
T ss_dssp SCSCEEEEESCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCGGGCCCCSCEEEEEECSSGG
T ss_pred cCCCcEEEECCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHcCC--ceEEEEeccccccccCCccEEEEccchh
Confidence 4788999999999999999999977 99999999 999999999998887 6999999999987788999999976333
Q ss_pred hhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 190 MLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 190 ~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
.+ .......+++++.++|+|||.+++
T Consensus 196 ~~-~~~~~~~~l~~~~~~LkpgG~l~i 221 (286)
T 3m70_A 196 FL-NRERVPSIIKNMKEHTNVGGYNLI 221 (286)
T ss_dssp GS-CGGGHHHHHHHHHHTEEEEEEEEE
T ss_pred hC-CHHHHHHHHHHHHHhcCCCcEEEE
Confidence 22 335578999999999999999775
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.9e-14 Score=136.30 Aligned_cols=114 Identities=19% Similarity=0.234 Sum_probs=94.1
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHH--cCCCeEEEEeCh-HHHHHHHHHHHHC-CCCCcEEEEEccccccc
Q 014247 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQ--AGAKRVYAVDAS-DIAVQANEVVKAN-NLTDKVIVLHGRVEDVE 174 (428)
Q Consensus 99 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~--~g~~~V~giD~s-~~~~~a~~~~~~~-~~~~~v~~~~~d~~~l~ 174 (428)
.+.+.+..... .++.+|||||||+|.++..+++ .+..+|+|+|+| .+++.|++++... +...+++++++|+.+++
T Consensus 24 ~~~~~l~~~~~-~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~ 102 (299)
T 3g5t_A 24 DFYKMIDEYHD-GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFK 102 (299)
T ss_dssp HHHHHHHHHCC-SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCG
T ss_pred HHHHHHHHHhc-CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCC
Confidence 44555555543 5789999999999999999996 346699999999 9999999998886 45567999999999876
Q ss_pred CC-------CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 175 ID-------EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 175 ~~-------~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
.+ ++||+|++.. .+++. ++..+++++.++|+|||.+++.
T Consensus 103 ~~~~~~~~~~~fD~V~~~~---~l~~~-~~~~~l~~~~~~LkpgG~l~i~ 148 (299)
T 3g5t_A 103 FLGADSVDKQKIDMITAVE---CAHWF-DFEKFQRSAYANLRKDGTIAIW 148 (299)
T ss_dssp GGCTTTTTSSCEEEEEEES---CGGGS-CHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccccccccCCCeeEEeHhh---HHHHh-CHHHHHHHHHHhcCCCcEEEEE
Confidence 53 5899999976 55555 7999999999999999999873
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.56 E-value=1.4e-14 Score=134.15 Aligned_cols=99 Identities=20% Similarity=0.233 Sum_probs=85.2
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC----CCceeEEEE
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI----DEEVDVIIS 184 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~----~~~~DlVvs 184 (428)
.++.+|||||||+|.++..++.. ...+|+|+|++ .+++.|++++..+++.+ ++++++|+.+++. .++||+|++
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~~fD~V~~ 147 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLEN-TTFCHDRAETFGQRKDVRESYDIVTA 147 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSS-EEEEESCHHHHTTCTTTTTCEEEEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEeccHHHhcccccccCCccEEEE
Confidence 46789999999999999999864 34589999999 99999999999988865 9999999988764 378999998
Q ss_pred ecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 185 EWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 185 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
..+ .++..+++.+.++|+|||.+++.
T Consensus 148 ~~~-------~~~~~~l~~~~~~LkpgG~l~~~ 173 (240)
T 1xdz_A 148 RAV-------ARLSVLSELCLPLVKKNGLFVAL 173 (240)
T ss_dssp ECC-------SCHHHHHHHHGGGEEEEEEEEEE
T ss_pred ecc-------CCHHHHHHHHHHhcCCCCEEEEE
Confidence 541 35789999999999999999863
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.56 E-value=3.8e-15 Score=130.02 Aligned_cols=133 Identities=22% Similarity=0.188 Sum_probs=100.1
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC-CceeEEEEecc
Q 014247 110 FIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID-EEVDVIISEWM 187 (428)
Q Consensus 110 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~-~~~DlVvs~~~ 187 (428)
..++.+|||+|||+|.++..+++.+. +|+|+|++ .+++.++++ ..+++++.+| ++.+ ++||+|++..
T Consensus 15 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~------~~~v~~~~~d---~~~~~~~~D~v~~~~- 83 (170)
T 3i9f_A 15 EGKKGVIVDYGCGNGFYCKYLLEFAT-KLYCIDINVIALKEVKEK------FDSVITLSDP---KEIPDNSVDFILFAN- 83 (170)
T ss_dssp SSCCEEEEEETCTTCTTHHHHHTTEE-EEEEECSCHHHHHHHHHH------CTTSEEESSG---GGSCTTCEEEEEEES-
T ss_pred cCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEeCCHHHHHHHHHh------CCCcEEEeCC---CCCCCCceEEEEEcc-
Confidence 46788999999999999999999876 99999999 899888877 2368999999 3433 7899999876
Q ss_pred hhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhhccCCCCcchhHHHHHhcCCCCceEEee
Q 014247 188 GYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAMMPLAKQCAFEEPSVETI 267 (428)
Q Consensus 188 ~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~ 267 (428)
.+.+..++..+++++.++|+|||.+++....... ..... .....++...+..+++ ||+.......
T Consensus 84 --~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~------~~~~~-----~~~~~~~~~~~~~~l~--Gf~~~~~~~~ 148 (170)
T 3i9f_A 84 --SFHDMDDKQHVISEVKRILKDDGRVIIIDWRKEN------TGIGP-----PLSIRMDEKDYMGWFS--NFVVEKRFNP 148 (170)
T ss_dssp --CSTTCSCHHHHHHHHHHHEEEEEEEEEEEECSSC------CSSSS-----CGGGCCCHHHHHHHTT--TEEEEEEECS
T ss_pred --chhcccCHHHHHHHHHHhcCCCCEEEEEEcCccc------cccCc-----hHhhhcCHHHHHHHHh--CcEEEEccCC
Confidence 5666677899999999999999999875322110 00000 0123467788888887 9987665544
Q ss_pred c
Q 014247 268 T 268 (428)
Q Consensus 268 ~ 268 (428)
.
T Consensus 149 ~ 149 (170)
T 3i9f_A 149 T 149 (170)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.55 E-value=8.8e-15 Score=133.40 Aligned_cols=135 Identities=21% Similarity=0.280 Sum_probs=101.7
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC-CceeEEEEecchh
Q 014247 112 EGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID-EEVDVIISEWMGY 189 (428)
Q Consensus 112 ~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~-~~~DlVvs~~~~~ 189 (428)
++.+|||||||+|.++..+++. +|+|++ .+++.++++ +++++.+|+.+++.+ ++||+|++..
T Consensus 47 ~~~~vLDiG~G~G~~~~~l~~~-----~~vD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~v~~~~--- 110 (219)
T 1vlm_A 47 PEGRGVEIGVGTGRFAVPLKIK-----IGVEPSERMAEIARKR--------GVFVLKGTAENLPLKDESFDFALMVT--- 110 (219)
T ss_dssp CSSCEEEETCTTSTTHHHHTCC-----EEEESCHHHHHHHHHT--------TCEEEECBTTBCCSCTTCEEEEEEES---
T ss_pred CCCcEEEeCCCCCHHHHHHHHH-----hccCCCHHHHHHHHhc--------CCEEEEcccccCCCCCCCeeEEEEcc---
Confidence 3789999999999999888664 999999 898888765 488999999988765 6899999865
Q ss_pred hhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhh-------hhhhhccCCCCcchhHHHHHhcCCCCc
Q 014247 190 MLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSES-------IDFWRNVYGIDMSAMMPLAKQCAFEEP 262 (428)
Q Consensus 190 ~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~l~~~l~~~Gf~~~ 262 (428)
.+.+..++..+++++.++|+|||.+++..... ...+... ..++.....++...+..+++++||+..
T Consensus 111 ~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~ 183 (219)
T 1vlm_A 111 TICFVDDPERALKEAYRILKKGGYLIVGIVDR-------ESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEF 183 (219)
T ss_dssp CGGGSSCHHHHHHHHHHHEEEEEEEEEEEECS-------SSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEE
T ss_pred hHhhccCHHHHHHHHHHHcCCCcEEEEEEeCC-------ccHHHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEE
Confidence 56666778999999999999999998754321 1111100 011122344678899999999999987
Q ss_pred eEEeecC
Q 014247 263 SVETITG 269 (428)
Q Consensus 263 ~~~~~~~ 269 (428)
.+.....
T Consensus 184 ~~~~~~~ 190 (219)
T 1vlm_A 184 KVVQTLF 190 (219)
T ss_dssp EEEEECC
T ss_pred EEecccC
Confidence 7665543
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.55 E-value=4.9e-14 Score=128.62 Aligned_cols=130 Identities=18% Similarity=0.148 Sum_probs=104.6
Q ss_pred HHHhccCCCCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCC-ce
Q 014247 103 AIMQNQSFIEGKVVVDVGCGTGILSIFCAQAG-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDE-EV 179 (428)
Q Consensus 103 ~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~-~~ 179 (428)
++...+ .++.+|||||||+|.++..+++.+ +.+|+|+|++ .+++.|+++++.+++.++|+++.+|..+...++ +|
T Consensus 14 ~i~~~v--~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~ 91 (230)
T 3lec_A 14 KVANYV--PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNI 91 (230)
T ss_dssp HHHTTS--CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCC
T ss_pred HHHHhC--CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcccccccc
Confidence 344444 577899999999999999999986 5589999999 999999999999999999999999988865553 79
Q ss_pred eEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhhccCCCCcchhHHHHHhcCC
Q 014247 180 DVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAMMPLAKQCAF 259 (428)
Q Consensus 180 DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf 259 (428)
|+|+...|+. ..+..++......|+++|.++++ |. .....++.++.+.||
T Consensus 92 D~IviaGmGg-----~lI~~IL~~~~~~l~~~~~lIlq-------p~------------------~~~~~lr~~L~~~Gf 141 (230)
T 3lec_A 92 DTITICGMGG-----RLIADILNNDIDKLQHVKTLVLQ-------PN------------------NREDDLRKWLAANDF 141 (230)
T ss_dssp CEEEEEEECH-----HHHHHHHHHTGGGGTTCCEEEEE-------ES------------------SCHHHHHHHHHHTTE
T ss_pred CEEEEeCCch-----HHHHHHHHHHHHHhCcCCEEEEE-------CC------------------CChHHHHHHHHHCCC
Confidence 9988755443 23677888889999999999854 22 124567888899999
Q ss_pred CCceE
Q 014247 260 EEPSV 264 (428)
Q Consensus 260 ~~~~~ 264 (428)
....-
T Consensus 142 ~i~~E 146 (230)
T 3lec_A 142 EIVAE 146 (230)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 76543
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.6e-14 Score=131.55 Aligned_cols=111 Identities=17% Similarity=0.282 Sum_probs=88.5
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCC
Q 014247 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDE 177 (428)
Q Consensus 99 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~ 177 (428)
.+.+.+.... .++.+|||||||+|.++..+++.+. +|+|+|+| .+++.|+++. .++.++++|+.+++.++
T Consensus 29 ~~~~~l~~~~--~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~ 99 (239)
T 3bxo_A 29 DIADLVRSRT--PEASSLLDVACGTGTHLEHFTKEFG-DTAGLELSEDMLTHARKRL------PDATLHQGDMRDFRLGR 99 (239)
T ss_dssp HHHHHHHHHC--TTCCEEEEETCTTSHHHHHHHHHHS-EEEEEESCHHHHHHHHHHC------TTCEEEECCTTTCCCSS
T ss_pred HHHHHHHHhc--CCCCeEEEecccCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhC------CCCEEEECCHHHcccCC
Confidence 4445555544 5778999999999999999999866 99999999 9999888763 24899999999887778
Q ss_pred ceeEEEEec-chhhhcchhhHHHHHHHHhcccccCeEEEccC
Q 014247 178 EVDVIISEW-MGYMLLYESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 178 ~~DlVvs~~-~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
+||+|+|.. ..+.+....++..+++++.++|+|||.+++..
T Consensus 100 ~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 141 (239)
T 3bxo_A 100 KFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEP 141 (239)
T ss_dssp CEEEEEECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred CCcEEEEcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 999999632 22222233668899999999999999999874
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.7e-14 Score=127.67 Aligned_cols=115 Identities=13% Similarity=0.176 Sum_probs=90.5
Q ss_pred HHHHHHhcc-CCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC--
Q 014247 100 YRAAIMQNQ-SFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI-- 175 (428)
Q Consensus 100 ~~~~i~~~~-~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~-- 175 (428)
+.+.+...+ ...++.+|||+|||+|.++..+++.+..+|+|+|++ .+++.|++++..+++.++++++++|+.+...
T Consensus 31 ~~~~~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 110 (187)
T 2fhp_A 31 VKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQF 110 (187)
T ss_dssp HHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHH
Confidence 344444443 235788999999999999999988877799999999 9999999999998887789999999987432
Q ss_pred ---CCceeEEEEecchhhhcchhhHHHHHHHH--hcccccCeEEEccC
Q 014247 176 ---DEEVDVIISEWMGYMLLYESMLGSVITAR--DRWLKRGGLILPSY 218 (428)
Q Consensus 176 ---~~~~DlVvs~~~~~~l~~~~~~~~~l~~~--~~~LkpgG~lv~~~ 218 (428)
.++||+|+++.. +. ......++..+ .++|+|||.+++..
T Consensus 111 ~~~~~~fD~i~~~~~---~~-~~~~~~~~~~l~~~~~L~~gG~l~~~~ 154 (187)
T 2fhp_A 111 YEEKLQFDLVLLDPP---YA-KQEIVSQLEKMLERQLLTNEAVIVCET 154 (187)
T ss_dssp HHTTCCEEEEEECCC---GG-GCCHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred HhcCCCCCEEEECCC---CC-chhHHHHHHHHHHhcccCCCCEEEEEe
Confidence 478999999763 11 23355666666 89999999998753
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.55 E-value=4.2e-14 Score=125.43 Aligned_cols=114 Identities=24% Similarity=0.323 Sum_probs=94.9
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCC-cEEEEEcccccccCCC
Q 014247 100 YRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTD-KVIVLHGRVEDVEIDE 177 (428)
Q Consensus 100 ~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~-~v~~~~~d~~~l~~~~ 177 (428)
..+.+.+.+...++.+|||+|||+|.++..+++. ..+|+|+|++ .+++.|++++..+++.+ +++++++|+.+...++
T Consensus 40 ~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 118 (194)
T 1dus_A 40 GTKILVENVVVDKDDDILDLGCGYGVIGIALADE-VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDR 118 (194)
T ss_dssp HHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTS
T ss_pred HHHHHHHHcccCCCCeEEEeCCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccccC
Confidence 3445556666668899999999999999999998 4599999999 99999999999888765 5999999998755457
Q ss_pred ceeEEEEecchhhhcc-hhhHHHHHHHHhcccccCeEEEcc
Q 014247 178 EVDVIISEWMGYMLLY-ESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 178 ~~DlVvs~~~~~~l~~-~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
+||+|+++. .+++ ......+++.+.++|+|||.+++.
T Consensus 119 ~~D~v~~~~---~~~~~~~~~~~~l~~~~~~L~~gG~l~~~ 156 (194)
T 1dus_A 119 KYNKIITNP---PIRAGKEVLHRIIEEGKELLKDNGEIWVV 156 (194)
T ss_dssp CEEEEEECC---CSTTCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CceEEEECC---CcccchhHHHHHHHHHHHHcCCCCEEEEE
Confidence 899999976 3333 456889999999999999999865
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.55 E-value=1e-13 Score=125.28 Aligned_cols=134 Identities=16% Similarity=0.169 Sum_probs=100.3
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC-Cc
Q 014247 101 RAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID-EE 178 (428)
Q Consensus 101 ~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~-~~ 178 (428)
.+.+.... .++.+|||||||+|.++..+ +..+|+|+|++ .+++.|+++. .++.++++|+.+++.+ ++
T Consensus 27 ~~~l~~~~--~~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~~ 95 (211)
T 2gs9_A 27 ERALKGLL--PPGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRA------PEATWVRAWGEALPFPGES 95 (211)
T ss_dssp HHHHHTTC--CCCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHC------TTSEEECCCTTSCCSCSSC
T ss_pred HHHHHHhc--CCCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhC------CCcEEEEcccccCCCCCCc
Confidence 34444444 27889999999999998877 55589999999 9999888765 3589999999988765 78
Q ss_pred eeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhh--------hhhhhccCCCCcchh
Q 014247 179 VDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSES--------IDFWRNVYGIDMSAM 250 (428)
Q Consensus 179 ~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~l 250 (428)
||+|++.. .+++..++..+++++.++|||||.+++..... ...+... ...+.....++..++
T Consensus 96 fD~v~~~~---~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l 165 (211)
T 2gs9_A 96 FDVVLLFT---TLEFVEDVERVLLEARRVLRPGGALVVGVLEA-------LSPWAALYRRLGEKGVLPWAQARFLAREDL 165 (211)
T ss_dssp EEEEEEES---CTTTCSCHHHHHHHHHHHEEEEEEEEEEEECT-------TSHHHHHHHHHHHTTCTTGGGCCCCCHHHH
T ss_pred EEEEEEcC---hhhhcCCHHHHHHHHHHHcCCCCEEEEEecCC-------cCcHHHHHHHHhhccCccccccccCCHHHH
Confidence 99999865 66666789999999999999999998754321 1111110 112334455788889
Q ss_pred HHHHH
Q 014247 251 MPLAK 255 (428)
Q Consensus 251 ~~~l~ 255 (428)
..+++
T Consensus 166 ~~~l~ 170 (211)
T 2gs9_A 166 KALLG 170 (211)
T ss_dssp HHHHC
T ss_pred HHHhc
Confidence 99887
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=5.1e-14 Score=136.76 Aligned_cols=153 Identities=16% Similarity=0.070 Sum_probs=111.6
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeChHHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEEecc
Q 014247 109 SFIEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWM 187 (428)
Q Consensus 109 ~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~~~ 187 (428)
...+..+|||||||+|.++..+++. +..+++++|+..+++.|++++...++.++++++.+|+. .+.+.+||+|++..
T Consensus 166 ~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~p~~~D~v~~~~- 243 (332)
T 3i53_A 166 DWAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFF-DPLPAGAGGYVLSA- 243 (332)
T ss_dssp CCGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTT-SCCCCSCSEEEEES-
T ss_pred CCCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecCHHHHHHHHHhhhhcCcCcCeEEecCCCC-CCCCCCCcEEEEeh-
Confidence 3345689999999999999999886 33489999998899999999999888889999999997 34445899999876
Q ss_pred hhhhcchhh--HHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhh-hhccCCCCcchhHHHHHhcCCCCceE
Q 014247 188 GYMLLYESM--LGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDF-WRNVYGIDMSAMMPLAKQCAFEEPSV 264 (428)
Q Consensus 188 ~~~l~~~~~--~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~Gf~~~~~ 264 (428)
++++..+ ...+++++++.|+|||++++........ .+..+.+.... .......+..++..+++++||+...+
T Consensus 244 --vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~---~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 318 (332)
T 3i53_A 244 --VLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDE---HAGTGMDLRMLTYFGGKERSLAELGELAAQAGLAVRAA 318 (332)
T ss_dssp --CGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC------CCHHHHHHHHHHHSCCCCCHHHHHHHHHHTTEEEEEE
T ss_pred --hhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCC---CccHHHHHHHHhhCCCCCCCHHHHHHHHHHCCCEEEEE
Confidence 5554444 5889999999999999998765432211 11111111100 11223356788999999999998776
Q ss_pred Eeec
Q 014247 265 ETIT 268 (428)
Q Consensus 265 ~~~~ 268 (428)
....
T Consensus 319 ~~~~ 322 (332)
T 3i53_A 319 HPIS 322 (332)
T ss_dssp EECS
T ss_pred EECC
Confidence 6543
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=5.8e-14 Score=127.86 Aligned_cols=129 Identities=19% Similarity=0.178 Sum_probs=102.2
Q ss_pred HHHhccCCCCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccc-ccCCCce
Q 014247 103 AIMQNQSFIEGKVVVDVGCGTGILSIFCAQAG-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVED-VEIDEEV 179 (428)
Q Consensus 103 ~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~-l~~~~~~ 179 (428)
++...+ .++.+|||||||+|.++..+++.+ ..+|+|+|++ .+++.|+++++.+++.++|+++.+|..+ ++...+|
T Consensus 8 ~l~~~v--~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~ 85 (225)
T 3kr9_A 8 LVASFV--SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQV 85 (225)
T ss_dssp HHHTTS--CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCC
T ss_pred HHHHhC--CCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCC
Confidence 344444 577899999999999999999986 5589999999 9999999999999999899999999854 4332379
Q ss_pred eEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhhccCCCCcchhHHHHHhcCC
Q 014247 180 DVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAMMPLAKQCAF 259 (428)
Q Consensus 180 DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf 259 (428)
|+|+...++. ..+..++......|+++|.++++ +. .....+..++.+.||
T Consensus 86 D~IviaG~Gg-----~~i~~Il~~~~~~L~~~~~lVlq-------~~------------------~~~~~vr~~L~~~Gf 135 (225)
T 3kr9_A 86 SVITIAGMGG-----RLIARILEEGLGKLANVERLILQ-------PN------------------NREDDLRIWLQDHGF 135 (225)
T ss_dssp CEEEEEEECH-----HHHHHHHHHTGGGCTTCCEEEEE-------ES------------------SCHHHHHHHHHHTTE
T ss_pred CEEEEcCCCh-----HHHHHHHHHHHHHhCCCCEEEEE-------CC------------------CCHHHHHHHHHHCCC
Confidence 9998755432 23678899999999999999863 22 123467778888998
Q ss_pred CCce
Q 014247 260 EEPS 263 (428)
Q Consensus 260 ~~~~ 263 (428)
....
T Consensus 136 ~i~~ 139 (225)
T 3kr9_A 136 QIVA 139 (225)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7654
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.53 E-value=7.7e-14 Score=128.31 Aligned_cols=129 Identities=16% Similarity=0.186 Sum_probs=103.8
Q ss_pred HHHhccCCCCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCC-ce
Q 014247 103 AIMQNQSFIEGKVVVDVGCGTGILSIFCAQAG-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDE-EV 179 (428)
Q Consensus 103 ~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~-~~ 179 (428)
++...+ .++.+|||||||+|.++..+++.+ +.+|+|+|++ .+++.|+++++.+++.++|+++.+|..+...++ +|
T Consensus 14 ~i~~~v--~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~ 91 (244)
T 3gnl_A 14 KVASYI--TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAI 91 (244)
T ss_dssp HHHTTC--CSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCC
T ss_pred HHHHhC--CCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccc
Confidence 444554 577899999999999999999986 4589999999 999999999999999999999999988765544 59
Q ss_pred eEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhhccCCCCcchhHHHHHhcCC
Q 014247 180 DVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAMMPLAKQCAF 259 (428)
Q Consensus 180 DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf 259 (428)
|+|++..++. ..+..++......|+++|.+|++ |.. ....++.++.+.||
T Consensus 92 D~IviagmGg-----~lI~~IL~~~~~~L~~~~~lIlq-------~~~------------------~~~~lr~~L~~~Gf 141 (244)
T 3gnl_A 92 DTIVIAGMGG-----TLIRTILEEGAAKLAGVTKLILQ-------PNI------------------AAWQLREWSEQNNW 141 (244)
T ss_dssp CEEEEEEECH-----HHHHHHHHHTGGGGTTCCEEEEE-------ESS------------------CHHHHHHHHHHHTE
T ss_pred cEEEEeCCch-----HHHHHHHHHHHHHhCCCCEEEEE-------cCC------------------ChHHHHHHHHHCCC
Confidence 9998755443 23677888899999999999864 221 23567788889999
Q ss_pred CCce
Q 014247 260 EEPS 263 (428)
Q Consensus 260 ~~~~ 263 (428)
....
T Consensus 142 ~i~~ 145 (244)
T 3gnl_A 142 LITS 145 (244)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7644
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.1e-13 Score=136.31 Aligned_cols=158 Identities=15% Similarity=0.121 Sum_probs=114.5
Q ss_pred HHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEeChHHHHHHHHHHHHCCCCCcEEEEEcccccccCCCcee
Q 014247 102 AAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAG-AKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVD 180 (428)
Q Consensus 102 ~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g-~~~V~giD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~D 180 (428)
..+.+.....++.+|||||||+|.++..+++.. ..+++++|+..+++.|++++...++.++|+++.+|+. .+.+..||
T Consensus 192 ~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~l~~~v~~~~~d~~-~~~p~~~D 270 (369)
T 3gwz_A 192 GQVAAAYDFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLADRCEILPGDFF-ETIPDGAD 270 (369)
T ss_dssp HHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTT-TCCCSSCS
T ss_pred HHHHHhCCCccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcCHHHHHHHHHhhhhcCcCCceEEeccCCC-CCCCCCce
Confidence 345555555678899999999999999999873 3489999998889999999999888889999999998 34455899
Q ss_pred EEEEecchhhhcchhhH--HHHHHHHhcccccCeEEEccCCeeeEeecCCccc--hhhhh-hhhhccCCCCcchhHHHHH
Q 014247 181 VIISEWMGYMLLYESML--GSVITARDRWLKRGGLILPSYATLYMAPVTHPDR--YSESI-DFWRNVYGIDMSAMMPLAK 255 (428)
Q Consensus 181 lVvs~~~~~~l~~~~~~--~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~l~~~l~ 255 (428)
+|++.. ++++..+. ..+++++.+.|+|||++++...... -..... +.+.. -........+.+++..+++
T Consensus 271 ~v~~~~---vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~---~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~ 344 (369)
T 3gwz_A 271 VYLIKH---VLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLID---ERPAASTLFVDLLLLVLVGGAERSESEFAALLE 344 (369)
T ss_dssp EEEEES---CGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCC---SSCCHHHHHHHHHHHHHHSCCCBCHHHHHHHHH
T ss_pred EEEhhh---hhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccC---CCCCCchhHhhHHHHhhcCCccCCHHHHHHHHH
Confidence 999876 45554444 4799999999999999987543221 000000 11100 0011223356788999999
Q ss_pred hcCCCCceEEe
Q 014247 256 QCAFEEPSVET 266 (428)
Q Consensus 256 ~~Gf~~~~~~~ 266 (428)
++||+...+..
T Consensus 345 ~aGf~~~~~~~ 355 (369)
T 3gwz_A 345 KSGLRVERSLP 355 (369)
T ss_dssp TTTEEEEEEEE
T ss_pred HCCCeEEEEEE
Confidence 99999877654
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.8e-13 Score=134.35 Aligned_cols=160 Identities=10% Similarity=0.065 Sum_probs=115.9
Q ss_pred HHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEeChHHHHHHHHHHHHCCCCCcEEEEEcccccccCCCcee
Q 014247 102 AAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAG-AKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVD 180 (428)
Q Consensus 102 ~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g-~~~V~giD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~D 180 (428)
+.+.+.+...++.+|||||||+|.++..+++.. ..+++++|+..+++.|++++...++.++++++.+|+.+.+.+. +|
T Consensus 180 ~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-~D 258 (359)
T 1x19_A 180 QLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE-AD 258 (359)
T ss_dssp HHHHHHCCCTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCCC-CS
T ss_pred HHHHHhcCCCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCCCEEEEeCccccCCCCC-CC
Confidence 344555556778899999999999999999873 3489999998889999999999888888999999998876554 49
Q ss_pred EEEEecchhhhcchhh--HHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhh-ccCC------CCcchhH
Q 014247 181 VIISEWMGYMLLYESM--LGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWR-NVYG------IDMSAMM 251 (428)
Q Consensus 181 lVvs~~~~~~l~~~~~--~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------~~~~~l~ 251 (428)
+|++.. .+++..+ ...+++++.++|+|||++++...... -.....+......+. ...+ ++..++.
T Consensus 259 ~v~~~~---vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~---~~~~~~~~~~~~~~~~~~~g~~~~~~~t~~e~~ 332 (359)
T 1x19_A 259 AVLFCR---ILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVID---DPENPNFDYLSHYILGAGMPFSVLGFKEQARYK 332 (359)
T ss_dssp EEEEES---CGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCC---CTTSCCHHHHHHHGGGGGSSCCCCCCCCGGGHH
T ss_pred EEEEec---hhccCCHHHHHHHHHHHHHhcCCCCEEEEEecccC---CCCCchHHHHHHHHHhcCCCCcccCCCCHHHHH
Confidence 999866 4544444 78999999999999999976542211 000111111101111 1112 6788999
Q ss_pred HHHHhcCCCCceEEeec
Q 014247 252 PLAKQCAFEEPSVETIT 268 (428)
Q Consensus 252 ~~l~~~Gf~~~~~~~~~ 268 (428)
++++++||+...+....
T Consensus 333 ~ll~~aGf~~v~~~~~~ 349 (359)
T 1x19_A 333 EILESLGYKDVTMVRKY 349 (359)
T ss_dssp HHHHHHTCEEEEEEEET
T ss_pred HHHHHCCCceEEEEecC
Confidence 99999999987766543
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.52 E-value=4.3e-14 Score=123.97 Aligned_cols=110 Identities=16% Similarity=0.165 Sum_probs=88.9
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccc-ccCC
Q 014247 100 YRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVED-VEID 176 (428)
Q Consensus 100 ~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~-l~~~ 176 (428)
+...+...+...++.+|||+|||+|.++..+++. +..+|+|+|++ .+++.|++++..+++.+++ ++++|..+ ++..
T Consensus 13 ~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~ 91 (178)
T 3hm2_A 13 VRALAISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDV 91 (178)
T ss_dssp HHHHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGC
T ss_pred HHHHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhcc
Confidence 4455555556678899999999999999999987 34599999999 9999999999998887678 88888754 3333
Q ss_pred -CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 177 -EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 177 -~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
++||+|++.. .+.+ ..+++.+.++|+|||++++.
T Consensus 92 ~~~~D~i~~~~---~~~~----~~~l~~~~~~L~~gG~l~~~ 126 (178)
T 3hm2_A 92 PDNPDVIFIGG---GLTA----PGVFAAAWKRLPVGGRLVAN 126 (178)
T ss_dssp CSCCSEEEECC----TTC----TTHHHHHHHTCCTTCEEEEE
T ss_pred CCCCCEEEECC---cccH----HHHHHHHHHhcCCCCEEEEE
Confidence 7899999865 3433 67888999999999999864
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=7.7e-14 Score=130.37 Aligned_cols=135 Identities=19% Similarity=0.218 Sum_probs=105.4
Q ss_pred HHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC
Q 014247 98 ETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID 176 (428)
Q Consensus 98 ~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~ 176 (428)
..+.+++...+ .++.+|||+|||+|.++..+++.|+ +|+|+|++ .+++.|++++..+++. ++++++|+.+....
T Consensus 108 ~~~~~~l~~~~--~~~~~VLDiGcG~G~l~~~la~~g~-~v~gvDi~~~~v~~a~~n~~~~~~~--v~~~~~d~~~~~~~ 182 (254)
T 2nxc_A 108 RLALKALARHL--RPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGVR--PRFLEGSLEAALPF 182 (254)
T ss_dssp HHHHHHHHHHC--CTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTCC--CEEEESCHHHHGGG
T ss_pred HHHHHHHHHhc--CCCCEEEEecCCCcHHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHHcCCc--EEEEECChhhcCcC
Confidence 34455555553 6789999999999999999999988 99999999 9999999999998875 89999998774224
Q ss_pred CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhhccCCCCcchhHHHHHh
Q 014247 177 EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAMMPLAKQ 256 (428)
Q Consensus 177 ~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 256 (428)
++||+|+++.+. ..+..++..+.++|+|||+++++.... -....+...+++
T Consensus 183 ~~fD~Vv~n~~~------~~~~~~l~~~~~~LkpgG~lils~~~~-----------------------~~~~~v~~~l~~ 233 (254)
T 2nxc_A 183 GPFDLLVANLYA------ELHAALAPRYREALVPGGRALLTGILK-----------------------DRAPLVREAMAG 233 (254)
T ss_dssp CCEEEEEEECCH------HHHHHHHHHHHHHEEEEEEEEEEEEEG-----------------------GGHHHHHHHHHH
T ss_pred CCCCEEEECCcH------HHHHHHHHHHHHHcCCCCEEEEEeecc-----------------------CCHHHHHHHHHH
Confidence 789999997522 236788999999999999998742110 124567778889
Q ss_pred cCCCCceEEe
Q 014247 257 CAFEEPSVET 266 (428)
Q Consensus 257 ~Gf~~~~~~~ 266 (428)
+||+...+..
T Consensus 234 ~Gf~~~~~~~ 243 (254)
T 2nxc_A 234 AGFRPLEEAA 243 (254)
T ss_dssp TTCEEEEEEE
T ss_pred CCCEEEEEec
Confidence 9998766544
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.52 E-value=6.9e-14 Score=125.11 Aligned_cols=108 Identities=22% Similarity=0.308 Sum_probs=89.0
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHc--CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc--CCCceeEEEE
Q 014247 110 FIEGKVVVDVGCGTGILSIFCAQA--GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE--IDEEVDVIIS 184 (428)
Q Consensus 110 ~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~--~~~~~DlVvs 184 (428)
..++.+|||+|||+|.++..+++. +..+|+|+|++ .+++.|++++..+++.++++++++|+.++. .+++||+|++
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~ 99 (197)
T 3eey_A 20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMF 99 (197)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEE
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEE
Confidence 367889999999999999999987 34599999999 999999999999988778999999998874 3489999998
Q ss_pred ecch------hhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 185 EWMG------YMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 185 ~~~~------~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
+... .......+...+++++.++|+|||++++.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~ 138 (197)
T 3eey_A 100 NLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVV 138 (197)
T ss_dssp EESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEE
Confidence 7521 01122335677999999999999999864
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=5.5e-14 Score=137.57 Aligned_cols=115 Identities=21% Similarity=0.248 Sum_probs=92.2
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHH-------HHCCC-CCcEEEEEccc
Q 014247 101 RAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVV-------KANNL-TDKVIVLHGRV 170 (428)
Q Consensus 101 ~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~-------~~~~~-~~~v~~~~~d~ 170 (428)
...+.+.+...++.+|||||||+|.+++.+|.. ++.+|+|||++ .+++.|++++ +.+++ ..+|+|+++|+
T Consensus 162 i~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~ 241 (438)
T 3uwp_A 162 VAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDF 241 (438)
T ss_dssp HHHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCT
T ss_pred HHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcc
Confidence 344555566789999999999999999998865 77679999999 8999988754 34565 36799999999
Q ss_pred ccccCC---CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCC
Q 014247 171 EDVEID---EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYA 219 (428)
Q Consensus 171 ~~l~~~---~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 219 (428)
.++++. ..||+|+++. .++ ..++...|.++.+.|||||+|+....
T Consensus 242 ~~lp~~d~~~~aDVVf~Nn---~~F-~pdl~~aL~Ei~RvLKPGGrIVssE~ 289 (438)
T 3uwp_A 242 LSEEWRERIANTSVIFVNN---FAF-GPEVDHQLKERFANMKEGGRIVSSKP 289 (438)
T ss_dssp TSHHHHHHHHTCSEEEECC---TTC-CHHHHHHHHHHHTTSCTTCEEEESSC
T ss_pred cCCccccccCCccEEEEcc---ccc-CchHHHHHHHHHHcCCCCcEEEEeec
Confidence 988764 4799999976 333 45688888999999999999997654
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.7e-13 Score=121.28 Aligned_cols=112 Identities=26% Similarity=0.355 Sum_probs=92.8
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccc-ccCC
Q 014247 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVED-VEID 176 (428)
Q Consensus 99 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~-l~~~ 176 (428)
.....+...+...++.+|||+|||+|.++..+++.+ .+|+++|++ .+++.|++++..+++..++.++++|+.+ ++..
T Consensus 20 ~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 98 (192)
T 1l3i_A 20 EVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKI 98 (192)
T ss_dssp HHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTS
T ss_pred HHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc-CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccC
Confidence 344555565666788999999999999999999987 699999999 9999999999998886679999999887 3322
Q ss_pred CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 177 EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 177 ~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
++||+|++.. .+ ..+..+++.+.++|+|||.+++.
T Consensus 99 ~~~D~v~~~~---~~---~~~~~~l~~~~~~l~~gG~l~~~ 133 (192)
T 1l3i_A 99 PDIDIAVVGG---SG---GELQEILRIIKDKLKPGGRIIVT 133 (192)
T ss_dssp CCEEEEEESC---CT---TCHHHHHHHHHHTEEEEEEEEEE
T ss_pred CCCCEEEECC---ch---HHHHHHHHHHHHhcCCCcEEEEE
Confidence 6899999864 22 24688999999999999999864
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.7e-14 Score=124.39 Aligned_cols=111 Identities=14% Similarity=0.065 Sum_probs=89.1
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc--CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccc
Q 014247 97 TETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA--GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDV 173 (428)
Q Consensus 97 ~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l 173 (428)
.+.+...+...+ .+..+|||+|||+|.+++.++.. ++ +|+|+|+| .|++.+++++..+|...++++ .|....
T Consensus 36 ld~fY~~~~~~l--~~~~~VLDlGCG~GplAl~l~~~~p~a-~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~ 110 (200)
T 3fzg_A 36 LNDFYTYVFGNI--KHVSSILDFGCGFNPLALYQWNENEKI-IYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESD 110 (200)
T ss_dssp HHHHHHHHHHHS--CCCSEEEEETCTTHHHHHHHHCSSCCC-EEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHH
T ss_pred HHHHHHHHHhhc--CCCCeEEEecCCCCHHHHHHHhcCCCC-EEEEEeCCHHHHHHHHHHHHhcCCCccEEE--eccccc
Confidence 345555666665 55789999999999999999886 45 99999999 999999999999999877777 565555
Q ss_pred cCCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEE
Q 014247 174 EIDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLIL 215 (428)
Q Consensus 174 ~~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv 215 (428)
..+++||+|++..+.++ ..+.+..+.++.+.|+|||++|
T Consensus 111 ~~~~~~DvVLa~k~LHl---L~~~~~al~~v~~~L~pggvfI 149 (200)
T 3fzg_A 111 VYKGTYDVVFLLKMLPV---LKQQDVNILDFLQLFHTQNFVI 149 (200)
T ss_dssp HTTSEEEEEEEETCHHH---HHHTTCCHHHHHHTCEEEEEEE
T ss_pred CCCCCcChhhHhhHHHh---hhhhHHHHHHHHHHhCCCCEEE
Confidence 56689999998764333 3556666778999999999988
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=2.7e-13 Score=128.19 Aligned_cols=144 Identities=16% Similarity=0.155 Sum_probs=109.3
Q ss_pred hhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccc
Q 014247 95 VRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVED 172 (428)
Q Consensus 95 ~r~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 172 (428)
...+.+.+.+...+. .++.+|||+|||+|.++..+++. +..+|+|+|+| .+++.|++++..+++. +++++++|+.+
T Consensus 93 ~~te~l~~~~l~~~~-~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~-~v~~~~~d~~~ 170 (276)
T 2b3t_A 93 PDTECLVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIK-NIHILQSDWFS 170 (276)
T ss_dssp TTHHHHHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCC-SEEEECCSTTG
T ss_pred chHHHHHHHHHHhcc-cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-ceEEEEcchhh
Confidence 345666666766654 56789999999999999999975 44599999999 9999999999988876 59999999987
Q ss_pred ccCCCceeEEEEecchh----------hhcch------------hhHHHHHHHHhcccccCeEEEccCCeeeEeecCCcc
Q 014247 173 VEIDEEVDVIISEWMGY----------MLLYE------------SMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPD 230 (428)
Q Consensus 173 l~~~~~~DlVvs~~~~~----------~l~~~------------~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~ 230 (428)
...+++||+|+++.... .+.++ .....++..+.++|+|||.+++...
T Consensus 171 ~~~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~----------- 239 (276)
T 2b3t_A 171 ALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHG----------- 239 (276)
T ss_dssp GGTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECC-----------
T ss_pred hcccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC-----------
Confidence 54357899999974211 11111 3468889999999999999986421
Q ss_pred chhhhhhhhhccCCCCcchhHHHHHhcCCCCceE
Q 014247 231 RYSESIDFWRNVYGIDMSAMMPLAKQCAFEEPSV 264 (428)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~ 264 (428)
......+..+++++||....+
T Consensus 240 -------------~~~~~~~~~~l~~~Gf~~v~~ 260 (276)
T 2b3t_A 240 -------------WQQGEAVRQAFILAGYHDVET 260 (276)
T ss_dssp -------------SSCHHHHHHHHHHTTCTTCCE
T ss_pred -------------chHHHHHHHHHHHCCCcEEEE
Confidence 012456777888899986554
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.51 E-value=4.8e-14 Score=135.06 Aligned_cols=108 Identities=15% Similarity=0.100 Sum_probs=81.3
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCC-----cEEEEEccc------cccc---CC
Q 014247 112 EGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTD-----KVIVLHGRV------EDVE---ID 176 (428)
Q Consensus 112 ~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~-----~v~~~~~d~------~~l~---~~ 176 (428)
++.+|||||||+|..+..+++.+..+|+|+|+| .|++.|+++....+... ++++.+.|+ .+++ ..
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~ 127 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYF 127 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCS
T ss_pred CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccccC
Confidence 578999999999986666666665699999999 99999999887655421 267888887 3332 23
Q ss_pred CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCC
Q 014247 177 EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYA 219 (428)
Q Consensus 177 ~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 219 (428)
++||+|+|....+.+....+...+++++.++|||||.++++.+
T Consensus 128 ~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~ 170 (302)
T 2vdw_A 128 GKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTM 170 (302)
T ss_dssp SCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 7999999966333222223468999999999999999997754
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.51 E-value=3.8e-14 Score=127.72 Aligned_cols=102 Identities=13% Similarity=0.161 Sum_probs=84.4
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccc-cC-CCceeEEEEecch
Q 014247 112 EGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDV-EI-DEEVDVIISEWMG 188 (428)
Q Consensus 112 ~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l-~~-~~~~DlVvs~~~~ 188 (428)
++.+|||+|||+|.++..+++.++.+|+|+|++ .+++.|++++..+++ ++++++++|+.+. +. .++||+|+++..
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~D~~~~~~~~~~~fD~V~~~~p- 131 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKA-GNARVVNSNAMSFLAQKGTPHNIVFVDPP- 131 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC-CSEEEECSCHHHHHSSCCCCEEEEEECCS-
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHHHhhcCCCCCEEEECCC-
Confidence 678999999999999999888887799999999 999999999999888 5699999998873 33 368999999763
Q ss_pred hhhcchhhHHHHHHHHhc--ccccCeEEEccC
Q 014247 189 YMLLYESMLGSVITARDR--WLKRGGLILPSY 218 (428)
Q Consensus 189 ~~l~~~~~~~~~l~~~~~--~LkpgG~lv~~~ 218 (428)
+ +......+++.+.+ +|+|||++++..
T Consensus 132 --~-~~~~~~~~l~~l~~~~~L~pgG~l~i~~ 160 (202)
T 2fpo_A 132 --F-RRGLLEETINLLEDNGWLADEALIYVES 160 (202)
T ss_dssp --S-STTTHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred --C-CCCcHHHHHHHHHhcCccCCCcEEEEEE
Confidence 1 23446677777754 699999998653
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.2e-13 Score=136.20 Aligned_cols=159 Identities=21% Similarity=0.152 Sum_probs=113.7
Q ss_pred HHHhccCCCCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEeChHHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeE
Q 014247 103 AIMQNQSFIEGKVVVDVGCGTGILSIFCAQAG-AKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDV 181 (428)
Q Consensus 103 ~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g-~~~V~giD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~Dl 181 (428)
.+.+.+...++.+|||||||+|.++..+++.. ..+++++|+..+++.|++++..+++.++++++.+|+.+ +.+..||+
T Consensus 173 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~D~ 251 (374)
T 1qzz_A 173 APADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFK-PLPVTADV 251 (374)
T ss_dssp HHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSCCEEE
T ss_pred HHHHhCCCCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeCHHHHHHHHHHHHhcCCCCceEEEeCCCCC-cCCCCCCE
Confidence 44455555678899999999999999999874 34899999988899999999998888789999999876 34456999
Q ss_pred EEEecchhhhcchhhH--HHHHHHHhcccccCeEEEccCC--eeeEeecCCccchhhhhhh----hhccCCCCcchhHHH
Q 014247 182 IISEWMGYMLLYESML--GSVITARDRWLKRGGLILPSYA--TLYMAPVTHPDRYSESIDF----WRNVYGIDMSAMMPL 253 (428)
Q Consensus 182 Vvs~~~~~~l~~~~~~--~~~l~~~~~~LkpgG~lv~~~~--~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~ 253 (428)
|++.. ++++..+. ..+++++.++|+|||++++... ... -.....+...... +.....++..++..+
T Consensus 252 v~~~~---vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 325 (374)
T 1qzz_A 252 VLLSF---VLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEG---DGADRFFSTLLDLRMLTFMGGRVRTRDEVVDL 325 (374)
T ss_dssp EEEES---CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH----------HHHHHHHHHHHHHHHSCCCCCHHHHHHH
T ss_pred EEEec---cccCCCHHHHHHHHHHHHHhcCCCcEEEEEechhhcC---CCCCcchhhhcchHHHHhCCCcCCCHHHHHHH
Confidence 99876 44444433 5899999999999999887544 211 0001111111111 111233578899999
Q ss_pred HHhcCCCCceEEeec
Q 014247 254 AKQCAFEEPSVETIT 268 (428)
Q Consensus 254 l~~~Gf~~~~~~~~~ 268 (428)
++++||+...+....
T Consensus 326 l~~aGf~~~~~~~~~ 340 (374)
T 1qzz_A 326 AGSAGLALASERTSG 340 (374)
T ss_dssp HHTTTEEEEEEEEEC
T ss_pred HHHCCCceEEEEECC
Confidence 999999987766553
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.51 E-value=5.1e-14 Score=126.92 Aligned_cols=103 Identities=21% Similarity=0.315 Sum_probs=84.7
Q ss_pred CCCCEEEEEcCCCcHH-HHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC-CceeEEEEecc
Q 014247 111 IEGKVVVDVGCGTGIL-SIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID-EEVDVIISEWM 187 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~l-s~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~-~~~DlVvs~~~ 187 (428)
.++.+|||+|||+|.+ ...+++.+. +|+|+|+| .+++.|++++..++. ++.++++|+.+++.+ ++||+|++..
T Consensus 22 ~~~~~vLDiGcG~G~~~~~~~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~fD~v~~~~- 97 (209)
T 2p8j_A 22 NLDKTVLDCGAGGDLPPLSIFVEDGY-KTYGIEISDLQLKKAENFSRENNF--KLNISKGDIRKLPFKDESMSFVYSYG- 97 (209)
T ss_dssp SSCSEEEEESCCSSSCTHHHHHHTTC-EEEEEECCHHHHHHHHHHHHHHTC--CCCEEECCTTSCCSCTTCEEEEEECS-
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHhcCC--ceEEEECchhhCCCCCCceeEEEEcC-
Confidence 5678999999999987 445556555 99999999 999999998877653 589999999988764 7899999865
Q ss_pred hhhhcch--hhHHHHHHHHhcccccCeEEEccCC
Q 014247 188 GYMLLYE--SMLGSVITARDRWLKRGGLILPSYA 219 (428)
Q Consensus 188 ~~~l~~~--~~~~~~l~~~~~~LkpgG~lv~~~~ 219 (428)
.+++. .++..+++++.++|+|||.+++...
T Consensus 98 --~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 129 (209)
T 2p8j_A 98 --TIFHMRKNDVKEAIDEIKRVLKPGGLACINFL 129 (209)
T ss_dssp --CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred --hHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 33333 6789999999999999999997643
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.51 E-value=1e-13 Score=129.23 Aligned_cols=136 Identities=23% Similarity=0.332 Sum_probs=107.5
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCC
Q 014247 101 RAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-G-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDE 177 (428)
Q Consensus 101 ~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~ 177 (428)
...+...+...++.+|||+|||+|.++..+++. + ..+|+++|++ .+++.|+++++.+++.++++++++|+.+....+
T Consensus 82 ~~~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 161 (255)
T 3mb5_A 82 AALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEEE 161 (255)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCCC
T ss_pred HHHHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCCC
Confidence 345666667788999999999999999999998 4 5599999999 999999999999999888999999998764457
Q ss_pred ceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhhccCCCCcchhHHHHHhc
Q 014247 178 EVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAMMPLAKQC 257 (428)
Q Consensus 178 ~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 257 (428)
+||+|+++. .+...+++.+.++|+|||.+++..... -....+...+++.
T Consensus 162 ~~D~v~~~~--------~~~~~~l~~~~~~L~~gG~l~~~~~~~-----------------------~~~~~~~~~l~~~ 210 (255)
T 3mb5_A 162 NVDHVILDL--------PQPERVVEHAAKALKPGGFFVAYTPCS-----------------------NQVMRLHEKLREF 210 (255)
T ss_dssp SEEEEEECS--------SCGGGGHHHHHHHEEEEEEEEEEESSH-----------------------HHHHHHHHHHHHT
T ss_pred CcCEEEECC--------CCHHHHHHHHHHHcCCCCEEEEEECCH-----------------------HHHHHHHHHHHHc
Confidence 899999854 234567889999999999998642210 0134556677888
Q ss_pred C--CCCceEEee
Q 014247 258 A--FEEPSVETI 267 (428)
Q Consensus 258 G--f~~~~~~~~ 267 (428)
| |..+.+...
T Consensus 211 g~~f~~~~~~e~ 222 (255)
T 3mb5_A 211 KDYFMKPRTINV 222 (255)
T ss_dssp GGGBSCCEEECC
T ss_pred CCCccccEEEEE
Confidence 8 988765543
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.51 E-value=4.8e-14 Score=131.66 Aligned_cols=109 Identities=15% Similarity=0.135 Sum_probs=82.9
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC---
Q 014247 100 YRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI--- 175 (428)
Q Consensus 100 ~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~--- 175 (428)
+.+.+...+...++.+|||||||+|.++..+++.|+ +|+|+|+| .|++.|++++..+ +++.++.++..
T Consensus 33 ~~~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~g~-~V~gvD~S~~ml~~Ar~~~~~~-------~v~~~~~~~~~~~~ 104 (261)
T 3iv6_A 33 DRENDIFLENIVPGSTVAVIGASTRFLIEKALERGA-SVTVFDFSQRMCDDLAEALADR-------CVTIDLLDITAEIP 104 (261)
T ss_dssp HHHHHHHTTTCCTTCEEEEECTTCHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTSSS-------CCEEEECCTTSCCC
T ss_pred HHHHHHHhcCCCCcCEEEEEeCcchHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHhc-------cceeeeeecccccc
Confidence 344556666778899999999999999999999976 89999999 9999999886543 23334433322
Q ss_pred ---CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccC
Q 014247 176 ---DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 176 ---~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
.++||+|+++.+.+.+ ...+...+++++.++| |||+++++.
T Consensus 105 ~~~~~~fD~Vv~~~~l~~~-~~~~~~~~l~~l~~lL-PGG~l~lS~ 148 (261)
T 3iv6_A 105 KELAGHFDFVLNDRLINRF-TTEEARRACLGMLSLV-GSGTVRASV 148 (261)
T ss_dssp GGGTTCCSEEEEESCGGGS-CHHHHHHHHHHHHHHH-TTSEEEEEE
T ss_pred cccCCCccEEEEhhhhHhC-CHHHHHHHHHHHHHhC-cCcEEEEEe
Confidence 4789999997632222 2345788999999999 999998763
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.51 E-value=6.6e-14 Score=127.77 Aligned_cols=150 Identities=22% Similarity=0.295 Sum_probs=107.4
Q ss_pred HHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccc--ccCC-Cc
Q 014247 103 AIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVED--VEID-EE 178 (428)
Q Consensus 103 ~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~--l~~~-~~ 178 (428)
.+.+.+. .++.+|||+|||+|.++..+++.| .+|+|+|++ .+++.++++. ..++.+|+.+ .+.+ ++
T Consensus 24 ~l~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~D~~~~~~~~~~~~~--------~~~~~~d~~~~~~~~~~~~ 93 (230)
T 3cc8_A 24 NLLKHIK-KEWKEVLDIGCSSGALGAAIKENG-TRVSGIEAFPEAAEQAKEKL--------DHVVLGDIETMDMPYEEEQ 93 (230)
T ss_dssp HHHTTCC-TTCSEEEEETCTTSHHHHHHHTTT-CEEEEEESSHHHHHHHHTTS--------SEEEESCTTTCCCCSCTTC
T ss_pred HHHHHhc-cCCCcEEEeCCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHHhC--------CcEEEcchhhcCCCCCCCc
Confidence 4455554 678899999999999999999986 599999999 8888776542 3788899887 3333 78
Q ss_pred eeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhh----------ccCCCCcc
Q 014247 179 VDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWR----------NVYGIDMS 248 (428)
Q Consensus 179 ~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~ 248 (428)
||+|++.. .+++..++..+++++.++|+|||.+++..+..... ..........|. ....++..
T Consensus 94 fD~v~~~~---~l~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (230)
T 3cc8_A 94 FDCVIFGD---VLEHLFDPWAVIEKVKPYIKQNGVILASIPNVSHI----SVLAPLLAGNWTYTEYGLLDKTHIRFFTFN 166 (230)
T ss_dssp EEEEEEES---CGGGSSCHHHHHHHTGGGEEEEEEEEEEEECTTSH----HHHHHHHTTCCCCBSSSTTBTTCCCCCCHH
T ss_pred cCEEEECC---hhhhcCCHHHHHHHHHHHcCCCCEEEEEeCCcchH----HHHHHHhcCCceeccCCCCCcceEEEecHH
Confidence 99999865 56666678899999999999999999764321100 000000000111 12346788
Q ss_pred hhHHHHHhcCCCCceEEeecC
Q 014247 249 AMMPLAKQCAFEEPSVETITG 269 (428)
Q Consensus 249 ~l~~~l~~~Gf~~~~~~~~~~ 269 (428)
.+..+++++||+...+.....
T Consensus 167 ~~~~~l~~~Gf~~~~~~~~~~ 187 (230)
T 3cc8_A 167 EMLRMFLKAGYSISKVDRVYV 187 (230)
T ss_dssp HHHHHHHHTTEEEEEEEEEEC
T ss_pred HHHHHHHHcCCeEEEEEeccc
Confidence 899999999999887776543
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.50 E-value=8.7e-14 Score=128.14 Aligned_cols=103 Identities=16% Similarity=0.221 Sum_probs=88.0
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC---CCceeEEEEe
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAG-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI---DEEVDVIISE 185 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~---~~~~DlVvs~ 185 (428)
.++.+|||||||+|..+..+++.. ..+|+++|++ .+++.|+++++..++.++++++.+|+.+... +++||+|++.
T Consensus 70 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~ 149 (232)
T 3ntv_A 70 NNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFID 149 (232)
T ss_dssp HTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEE
T ss_pred cCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEc
Confidence 577899999999999999999952 4599999999 9999999999999998789999999987532 5899999975
Q ss_pred cchhhhcchhhHHHHHHHHhcccccCeEEEccCC
Q 014247 186 WMGYMLLYESMLGSVITARDRWLKRGGLILPSYA 219 (428)
Q Consensus 186 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 219 (428)
. .......+++.+.++|+|||++++...
T Consensus 150 ~------~~~~~~~~l~~~~~~LkpgG~lv~d~~ 177 (232)
T 3ntv_A 150 A------AKAQSKKFFEIYTPLLKHQGLVITDNV 177 (232)
T ss_dssp T------TSSSHHHHHHHHGGGEEEEEEEEEECT
T ss_pred C------cHHHHHHHHHHHHHhcCCCeEEEEeeC
Confidence 4 233477899999999999999997543
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.1e-13 Score=129.01 Aligned_cols=128 Identities=16% Similarity=0.163 Sum_probs=99.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC----CCceeEEEE
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI----DEEVDVIIS 184 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~----~~~~DlVvs 184 (428)
.++.+|||||||+|..+..++.. +..+|+++|++ .+++.|++++..+++.+ ++++++|++++.. .++||+|+|
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~-v~~~~~d~~~~~~~~~~~~~fD~I~s 157 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKG-ARALWGRAEVLAREAGHREAYARAVA 157 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSS-EEEEECCHHHHTTSTTTTTCEEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCc-eEEEECcHHHhhcccccCCCceEEEE
Confidence 46789999999999999999986 45599999999 99999999999999876 9999999998764 379999999
Q ss_pred ecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhhccCCCCcchhHHHHHhcCCCCceE
Q 014247 185 EWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAMMPLAKQCAFEEPSV 264 (428)
Q Consensus 185 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~ 264 (428)
..+ .++..+++.+.++|||||++++..... ..+ .+..+...+.+.||....+
T Consensus 158 ~a~-------~~~~~ll~~~~~~LkpgG~l~~~~g~~----------~~~-----------e~~~~~~~l~~~G~~~~~~ 209 (249)
T 3g89_A 158 RAV-------APLCVLSELLLPFLEVGGAAVAMKGPR----------VEE-----------ELAPLPPALERLGGRLGEV 209 (249)
T ss_dssp ESS-------CCHHHHHHHHGGGEEEEEEEEEEECSC----------CHH-----------HHTTHHHHHHHHTEEEEEE
T ss_pred CCc-------CCHHHHHHHHHHHcCCCeEEEEEeCCC----------cHH-----------HHHHHHHHHHHcCCeEEEE
Confidence 652 246789999999999999988532110 000 1234566677788876655
Q ss_pred Eee
Q 014247 265 ETI 267 (428)
Q Consensus 265 ~~~ 267 (428)
..+
T Consensus 210 ~~~ 212 (249)
T 3g89_A 210 LAL 212 (249)
T ss_dssp EEE
T ss_pred EEe
Confidence 443
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.50 E-value=8.6e-14 Score=136.17 Aligned_cols=156 Identities=14% Similarity=0.115 Sum_probs=113.1
Q ss_pred HHHhccCCCC-CCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeChHHHHHHHHHHHHCCCCCcEEEEEccccccc--CCCc
Q 014247 103 AIMQNQSFIE-GKVVVDVGCGTGILSIFCAQA-GAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDVE--IDEE 178 (428)
Q Consensus 103 ~i~~~~~~~~-~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~--~~~~ 178 (428)
.+...+...+ +.+|||||||+|.++..+++. +..+++++|+..+++.|++++...++.++++++.+|+.+.+ .++.
T Consensus 169 ~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 248 (352)
T 3mcz_A 169 DVVSELGVFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGA 248 (352)
T ss_dssp HHHHTCGGGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCC
T ss_pred HHHHhCCCcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCC
Confidence 3444444455 789999999999999999987 33489999998889999999998888888999999999876 6678
Q ss_pred eeEEEEecchhhhcchh--hHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhh--hh---hccCCCCcchhH
Q 014247 179 VDVIISEWMGYMLLYES--MLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESID--FW---RNVYGIDMSAMM 251 (428)
Q Consensus 179 ~DlVvs~~~~~~l~~~~--~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~l~ 251 (428)
||+|++.. ++++.. ....+++++.+.|+|||++++....... ............ .+ .........++.
T Consensus 249 ~D~v~~~~---vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~ 323 (352)
T 3mcz_A 249 ADVVMLND---CLHYFDAREAREVIGHAAGLVKPGGALLILTMTMND--DRVTPALSADFSLHMMVNTNHGELHPTPWIA 323 (352)
T ss_dssp EEEEEEES---CGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCT--TSSSSHHHHHHHHHHHHHSTTCCCCCHHHHH
T ss_pred ccEEEEec---ccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCC--CCCCCchHHHhhHHHHhhCCCCCcCCHHHHH
Confidence 99999876 444443 3589999999999999999875432110 000011111111 11 112245678899
Q ss_pred HHHHhcCCCCce
Q 014247 252 PLAKQCAFEEPS 263 (428)
Q Consensus 252 ~~l~~~Gf~~~~ 263 (428)
.+++++||+...
T Consensus 324 ~ll~~aGf~~~~ 335 (352)
T 3mcz_A 324 GVVRDAGLAVGE 335 (352)
T ss_dssp HHHHHTTCEEEE
T ss_pred HHHHHCCCceee
Confidence 999999998765
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.50 E-value=1.5e-13 Score=126.30 Aligned_cols=105 Identities=19% Similarity=0.295 Sum_probs=84.7
Q ss_pred HhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccc----ccCCCc
Q 014247 105 MQNQSFIEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVED----VEIDEE 178 (428)
Q Consensus 105 ~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~----l~~~~~ 178 (428)
.+.+...++.+|||+|||+|.++..+++. |..+|+|+|++ .+++.|++++..+ .++.++.+|+.+ +++.++
T Consensus 67 l~~~~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~~~ 143 (230)
T 1fbn_A 67 LKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER---ENIIPILGDANKPQEYANIVEK 143 (230)
T ss_dssp CCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC---TTEEEEECCTTCGGGGTTTSCC
T ss_pred ccccCCCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC---CCeEEEECCCCCcccccccCcc
Confidence 33444567899999999999999999987 55699999999 9999998886554 469999999987 555578
Q ss_pred eeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 179 VDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 179 ~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
||+|+... ........+++++.++|+|||.+++.
T Consensus 144 ~D~v~~~~-----~~~~~~~~~l~~~~~~LkpgG~l~i~ 177 (230)
T 1fbn_A 144 VDVIYEDV-----AQPNQAEILIKNAKWFLKKGGYGMIA 177 (230)
T ss_dssp EEEEEECC-----CSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEEEec-----CChhHHHHHHHHHHHhCCCCcEEEEE
Confidence 99999532 22333477899999999999999874
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.49 E-value=7.5e-14 Score=127.50 Aligned_cols=105 Identities=17% Similarity=0.294 Sum_probs=85.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccc-c-CC-----Ccee
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQA-G-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDV-E-ID-----EEVD 180 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l-~-~~-----~~~D 180 (428)
.++.+|||||||+|..+..+++. + ..+|+++|++ .+++.|++++..+++.++++++++|+.+. + .. ++||
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD 136 (221)
T 3u81_A 57 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLD 136 (221)
T ss_dssp HCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCS
T ss_pred cCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceE
Confidence 46789999999999999999985 2 4599999999 99999999999999988899999998663 2 12 5899
Q ss_pred EEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCC
Q 014247 181 VIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYA 219 (428)
Q Consensus 181 lVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 219 (428)
+|++.. ...+......++..+ ++|+|||++++...
T Consensus 137 ~V~~d~---~~~~~~~~~~~~~~~-~~LkpgG~lv~~~~ 171 (221)
T 3u81_A 137 MVFLDH---WKDRYLPDTLLLEKC-GLLRKGTVLLADNV 171 (221)
T ss_dssp EEEECS---CGGGHHHHHHHHHHT-TCCCTTCEEEESCC
T ss_pred EEEEcC---CcccchHHHHHHHhc-cccCCCeEEEEeCC
Confidence 999865 233333345667777 99999999997654
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.49 E-value=8.4e-14 Score=127.63 Aligned_cols=116 Identities=16% Similarity=0.110 Sum_probs=92.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccc-ccccC--CCceeEEEEec
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRV-EDVEI--DEEVDVIISEW 186 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~-~~l~~--~~~~DlVvs~~ 186 (428)
.++.+|||||||+|.++..+++.+. +|+|+|++ .+++.|+++ ..+++++++|+ ..+++ +++||+|++.
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~------~~~~~~~~~d~~~~~~~~~~~~fD~v~~~- 118 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQAA-RWAAYDFSPELLKLARAN------APHADVYEWNGKGELPAGLGAPFGLIVSR- 118 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHH------CTTSEEEECCSCSSCCTTCCCCEEEEEEE-
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHh------CCCceEEEcchhhccCCcCCCCEEEEEeC-
Confidence 5788999999999999999999966 99999999 999998877 23589999999 45554 3789999985
Q ss_pred chhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhhccCCCCcchhHHHHHhcCCCCceEEe
Q 014247 187 MGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAMMPLAKQCAFEEPSVET 266 (428)
Q Consensus 187 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~ 266 (428)
.++..+++++.++|||||.++. . ....+...+...+.++||....+..
T Consensus 119 --------~~~~~~l~~~~~~LkpgG~l~~------~------------------~~~~~~~~~~~~l~~~Gf~~~~~~~ 166 (226)
T 3m33_A 119 --------RGPTSVILRLPELAAPDAHFLY------V------------------GPRLNVPEVPERLAAVGWDIVAEDH 166 (226)
T ss_dssp --------SCCSGGGGGHHHHEEEEEEEEE------E------------------ESSSCCTHHHHHHHHTTCEEEEEEE
T ss_pred --------CCHHHHHHHHHHHcCCCcEEEE------e------------------CCcCCHHHHHHHHHHCCCeEEEEEe
Confidence 2456778889999999999980 0 0123456788889999998766554
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.6e-13 Score=125.44 Aligned_cols=117 Identities=14% Similarity=0.226 Sum_probs=93.3
Q ss_pred HHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHHCCCC-CcEEEEEcccccc
Q 014247 98 ETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-G-AKRVYAVDAS-DIAVQANEVVKANNLT-DKVIVLHGRVEDV 173 (428)
Q Consensus 98 ~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~giD~s-~~~~~a~~~~~~~~~~-~~v~~~~~d~~~l 173 (428)
..+...+.......++.+|||||||+|..+..+++. + ..+|+++|++ .+++.|+++++..++. ++++++++|+.++
T Consensus 42 ~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~ 121 (221)
T 3dr5_A 42 GQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDV 121 (221)
T ss_dssp HHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHH
T ss_pred HHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHH
Confidence 344455555544344559999999999999999985 2 4599999999 9999999999999998 7899999998775
Q ss_pred c--C-CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCe
Q 014247 174 E--I-DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYAT 220 (428)
Q Consensus 174 ~--~-~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 220 (428)
. + +++||+|++.. .......+++.+.++|+|||++++....
T Consensus 122 l~~~~~~~fD~V~~d~------~~~~~~~~l~~~~~~LkpGG~lv~dn~~ 165 (221)
T 3dr5_A 122 MSRLANDSYQLVFGQV------SPMDLKALVDAAWPLLRRGGALVLADAL 165 (221)
T ss_dssp GGGSCTTCEEEEEECC------CTTTHHHHHHHHHHHEEEEEEEEETTTT
T ss_pred HHHhcCCCcCeEEEcC------cHHHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence 2 3 47999999854 2234667899999999999999987654
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.49 E-value=4.7e-13 Score=118.71 Aligned_cols=126 Identities=18% Similarity=0.246 Sum_probs=98.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC-CceeEEEEe-cc
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID-EEVDVIISE-WM 187 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~-~~~DlVvs~-~~ 187 (428)
.++.+|||+|||+|.++..+++.+. +|+|+|++ .+++.++++. .++.++++|+.+++.+ ++||+|++. .+
T Consensus 45 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~~~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~~~D~i~~~~~~ 117 (195)
T 3cgg_A 45 PRGAKILDAGCGQGRIGGYLSKQGH-DVLGTDLDPILIDYAKQDF------PEARWVVGDLSVDQISETDFDLIVSAGNV 117 (195)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHC------TTSEEEECCTTTSCCCCCCEEEEEECCCC
T ss_pred cCCCeEEEECCCCCHHHHHHHHCCC-cEEEEcCCHHHHHHHHHhC------CCCcEEEcccccCCCCCCceeEEEECCcH
Confidence 5788999999999999999999866 99999999 8998888764 2489999999987664 789999996 32
Q ss_pred hhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhhccCCCCcchhHHHHHhcCCCCceEE
Q 014247 188 GYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAMMPLAKQCAFEEPSVE 265 (428)
Q Consensus 188 ~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~ 265 (428)
.+. ....+...+++.+.++|+|||.+++.... ..+++...+..+++++||+.....
T Consensus 118 ~~~-~~~~~~~~~l~~~~~~l~~~G~l~~~~~~---------------------~~~~~~~~~~~~l~~~Gf~~~~~~ 173 (195)
T 3cgg_A 118 MGF-LAEDGREPALANIHRALGADGRAVIGFGA---------------------GRGWVFGDFLEVAERVGLELENAF 173 (195)
T ss_dssp GGG-SCHHHHHHHHHHHHHHEEEEEEEEEEEET---------------------TSSCCHHHHHHHHHHHTEEEEEEE
T ss_pred Hhh-cChHHHHHHHHHHHHHhCCCCEEEEEeCC---------------------CCCcCHHHHHHHHHHcCCEEeeee
Confidence 211 12355789999999999999999864211 012567788889999999865543
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.8e-13 Score=134.24 Aligned_cols=157 Identities=19% Similarity=0.186 Sum_probs=112.6
Q ss_pred HHhccCCCCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEeChHHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEE
Q 014247 104 IMQNQSFIEGKVVVDVGCGTGILSIFCAQAG-AKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVI 182 (428)
Q Consensus 104 i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g-~~~V~giD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlV 182 (428)
+.+.+...++.+|||||||+|.++..+++.+ ..+++++|+..+++.|++++..+++.++++++.+|+.+ +.+..||+|
T Consensus 175 l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~D~v 253 (360)
T 1tw3_A 175 PAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFE-PLPRKADAI 253 (360)
T ss_dssp HHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSSCEEEE
T ss_pred HHHhCCCccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHhcCCCCceEEEeCCCCC-CCCCCccEE
Confidence 4444555678899999999999999999874 34899999877899999999998888789999999876 344569999
Q ss_pred EEecchhhhcchhh--HHHHHHHHhcccccCeEEEccCCe-eeEeecCCccchhhhhhh----hhccCCCCcchhHHHHH
Q 014247 183 ISEWMGYMLLYESM--LGSVITARDRWLKRGGLILPSYAT-LYMAPVTHPDRYSESIDF----WRNVYGIDMSAMMPLAK 255 (428)
Q Consensus 183 vs~~~~~~l~~~~~--~~~~l~~~~~~LkpgG~lv~~~~~-~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~l~ 255 (428)
++.. .+++..+ ...+++++.++|+|||++++.... . +-.....+...... +.....++.+++..+++
T Consensus 254 ~~~~---vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~ 327 (360)
T 1tw3_A 254 ILSF---VLLNWPDHDAVRILTRCAEALEPGGRILIHERDDL---HENSFNEQFTELDLRMLVFLGGALRTREKWDGLAA 327 (360)
T ss_dssp EEES---CGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBC---GGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHH
T ss_pred EEcc---cccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEecc---CCCCCcchhhhccHHHhhhcCCcCCCHHHHHHHHH
Confidence 9866 4444333 368999999999999998875432 1 10001111111111 11223356789999999
Q ss_pred hcCCCCceEEee
Q 014247 256 QCAFEEPSVETI 267 (428)
Q Consensus 256 ~~Gf~~~~~~~~ 267 (428)
++||+...+...
T Consensus 328 ~aGf~~~~~~~~ 339 (360)
T 1tw3_A 328 SAGLVVEEVRQL 339 (360)
T ss_dssp HTTEEEEEEEEE
T ss_pred HCCCeEEEEEeC
Confidence 999988776654
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.49 E-value=5.1e-14 Score=130.44 Aligned_cols=101 Identities=16% Similarity=0.007 Sum_probs=83.0
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC------CceeEE
Q 014247 110 FIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID------EEVDVI 182 (428)
Q Consensus 110 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~------~~~DlV 182 (428)
..++.+|||||||+|.++..+++.+. +|+|+|+| .+++.|+++.. ..+++++++|+.+++.. ..||+|
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~~~-~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~~~~~~~~~~~d~v 128 (245)
T 3ggd_A 54 FNPELPLIDFACGNGTQTKFLSQFFP-RVIGLDVSKSALEIAAKENT----AANISYRLLDGLVPEQAAQIHSEIGDANI 128 (245)
T ss_dssp SCTTSCEEEETCTTSHHHHHHHHHSS-CEEEEESCHHHHHHHHHHSC----CTTEEEEECCTTCHHHHHHHHHHHCSCEE
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHhCC-CEEEEECCHHHHHHHHHhCc----ccCceEEECcccccccccccccccCccEE
Confidence 46778999999999999999999877 89999999 99999988752 23699999999886543 248999
Q ss_pred EEecchhhhcchh--hHHHHHHHHhcccccCeEEEccC
Q 014247 183 ISEWMGYMLLYES--MLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 183 vs~~~~~~l~~~~--~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
++.. .+++.. +...+++++.++|||||.+++..
T Consensus 129 ~~~~---~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 163 (245)
T 3ggd_A 129 YMRT---GFHHIPVEKRELLGQSLRILLGKQGAMYLIE 163 (245)
T ss_dssp EEES---SSTTSCGGGHHHHHHHHHHHHTTTCEEEEEE
T ss_pred EEcc---hhhcCCHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 9976 333333 68999999999999999877643
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=2.2e-14 Score=143.69 Aligned_cols=158 Identities=18% Similarity=0.279 Sum_probs=112.2
Q ss_pred HHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEE-EEEcccccccC
Q 014247 98 ETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVI-VLHGRVEDVEI 175 (428)
Q Consensus 98 ~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~-~~~~d~~~l~~ 175 (428)
..+.+.+.+.+...++.+|||||||+|.++..+++.|. +|+|+|+| .+++.|+++ +...... +...+...+++
T Consensus 93 ~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g~-~v~gvD~s~~~~~~a~~~----~~~~~~~~~~~~~~~~l~~ 167 (416)
T 4e2x_A 93 AMLARDFLATELTGPDPFIVEIGCNDGIMLRTIQEAGV-RHLGFEPSSGVAAKAREK----GIRVRTDFFEKATADDVRR 167 (416)
T ss_dssp HHHHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHTTC-EEEEECCCHHHHHHHHTT----TCCEECSCCSHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHcCC-cEEEECCCHHHHHHHHHc----CCCcceeeechhhHhhccc
Confidence 44566666777667889999999999999999999877 99999999 999888765 3322111 22344445544
Q ss_pred C-CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhh-hccCCCCcchhHHH
Q 014247 176 D-EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFW-RNVYGIDMSAMMPL 253 (428)
Q Consensus 176 ~-~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~ 253 (428)
+ ++||+|++.. .++|..++..+++++.++|||||++++....... ......+ ..+| .+...++...+..+
T Consensus 168 ~~~~fD~I~~~~---vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~--~~~~~~~---~~~~~~~~~~~s~~~l~~l 239 (416)
T 4e2x_A 168 TEGPANVIYAAN---TLCHIPYVQSVLEGVDALLAPDGVFVFEDPYLGD--IVAKTSF---DQIFDEHFFLFSATSVQGM 239 (416)
T ss_dssp HHCCEEEEEEES---CGGGCTTHHHHHHHHHHHEEEEEEEEEEEECHHH--HHHHTCG---GGCSTTCCEECCHHHHHHH
T ss_pred CCCCEEEEEECC---hHHhcCCHHHHHHHHHHHcCCCeEEEEEeCChHH--hhhhcch---hhhhhhhhhcCCHHHHHHH
Confidence 3 8999999976 6777788999999999999999999975432110 0000000 0111 22334677899999
Q ss_pred HHhcCCCCceEEeec
Q 014247 254 AKQCAFEEPSVETIT 268 (428)
Q Consensus 254 l~~~Gf~~~~~~~~~ 268 (428)
++++||+...++.++
T Consensus 240 l~~aGf~~~~~~~~~ 254 (416)
T 4e2x_A 240 AQRCGFELVDVQRLP 254 (416)
T ss_dssp HHHTTEEEEEEEEEC
T ss_pred HHHcCCEEEEEEEcc
Confidence 999999988877764
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.48 E-value=1e-13 Score=124.89 Aligned_cols=98 Identities=18% Similarity=0.236 Sum_probs=85.4
Q ss_pred CCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEEecchh
Q 014247 112 EGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWMGY 189 (428)
Q Consensus 112 ~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~~~~~ 189 (428)
++.+|||+|||+|.++..+++. +..+|+|+|++ .+++.|++++..+++.+ ++++++|+.+....++||+|++..+
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~~D~i~~~~~-- 141 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLEN-IEPVQSRVEEFPSEPPFDGVISRAF-- 141 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSS-EEEEECCTTTSCCCSCEEEEECSCS--
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-eEEEecchhhCCccCCcCEEEEecc--
Confidence 5789999999999999999986 34599999999 99999999999988876 9999999998765589999998541
Q ss_pred hhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 190 MLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 190 ~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
..+..++..+.++|+|||.+++.
T Consensus 142 -----~~~~~~l~~~~~~L~~gG~l~~~ 164 (207)
T 1jsx_A 142 -----ASLNDMVSWCHHLPGEQGRFYAL 164 (207)
T ss_dssp -----SSHHHHHHHHTTSEEEEEEEEEE
T ss_pred -----CCHHHHHHHHHHhcCCCcEEEEE
Confidence 34778999999999999999864
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=9e-15 Score=135.25 Aligned_cols=103 Identities=20% Similarity=0.149 Sum_probs=88.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEEecchh
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWMGY 189 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~~~~~ 189 (428)
.++.+|||+|||+|.++..+++.+ .+|+|+|++ .+++.|++++..+++.++++++++|+.+++..++||+|+++.
T Consensus 77 ~~~~~vLD~gcG~G~~~~~la~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~--- 152 (241)
T 3gdh_A 77 FKCDVVVDAFCGVGGNTIQFALTG-MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSP--- 152 (241)
T ss_dssp SCCSEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGGGCCCSEEEECC---
T ss_pred cCCCEEEECccccCHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcccCCCCEEEECC---
Confidence 478899999999999999999987 599999999 999999999999988667999999999987668999999976
Q ss_pred hhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 190 MLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 190 ~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
.+.+.......+..+.++|+|||.+++.
T Consensus 153 ~~~~~~~~~~~~~~~~~~L~pgG~~i~~ 180 (241)
T 3gdh_A 153 PWGGPDYATAETFDIRTMMSPDGFEIFR 180 (241)
T ss_dssp CCSSGGGGGSSSBCTTTSCSSCHHHHHH
T ss_pred CcCCcchhhhHHHHHHhhcCCcceeHHH
Confidence 3334444444667788999999997754
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.8e-13 Score=131.73 Aligned_cols=109 Identities=11% Similarity=0.099 Sum_probs=87.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCC------CCCcEEEEEccccccc----C---C
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANN------LTDKVIVLHGRVEDVE----I---D 176 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~------~~~~v~~~~~d~~~l~----~---~ 176 (428)
.++.+|||||||+|.++..+++.+..+|+|+|+| .+++.|+++....+ ...+++++++|+.+++ + +
T Consensus 33 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 112 (313)
T 3bgv_A 33 KRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQ 112 (313)
T ss_dssp --CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTT
T ss_pred CCCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCC
Confidence 3678999999999999999998766699999999 99999998876542 2346999999999875 3 2
Q ss_pred CceeEEEEecchhhh-cchhhHHHHHHHHhcccccCeEEEccCC
Q 014247 177 EEVDVIISEWMGYML-LYESMLGSVITARDRWLKRGGLILPSYA 219 (428)
Q Consensus 177 ~~~DlVvs~~~~~~l-~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 219 (428)
++||+|++....+.+ ....++..+++++.++|+|||.+++...
T Consensus 113 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 156 (313)
T 3bgv_A 113 MCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTP 156 (313)
T ss_dssp CCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred CCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecC
Confidence 589999997633222 3446678999999999999999987654
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.47 E-value=3.6e-13 Score=123.29 Aligned_cols=111 Identities=20% Similarity=0.308 Sum_probs=87.6
Q ss_pred HHHHHHHhc---cCCCCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccc
Q 014247 99 TYRAAIMQN---QSFIEGKVVVDVGCGTGILSIFCAQA-G-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVED 172 (428)
Q Consensus 99 ~~~~~i~~~---~~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 172 (428)
.+..+|..- +...+|.+|||+|||+|.++..+|+. | ..+|+|+|++ +|++.+++++.+. .++..+.+|..+
T Consensus 61 klaa~i~~gl~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~---~ni~~V~~d~~~ 137 (233)
T 4df3_A 61 KLAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDR---RNIFPILGDARF 137 (233)
T ss_dssp HHHHHHHTTCSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTC---TTEEEEESCTTC
T ss_pred HHHHHHHhchhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhh---cCeeEEEEeccC
Confidence 455666653 45789999999999999999999997 4 4599999999 9999988876543 358889888765
Q ss_pred cc---C-CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 173 VE---I-DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 173 l~---~-~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
.. . .+.+|+|++.. .+..+...++.++.++|||||++++.
T Consensus 138 p~~~~~~~~~vDvVf~d~-----~~~~~~~~~l~~~~r~LKpGG~lvI~ 181 (233)
T 4df3_A 138 PEKYRHLVEGVDGLYADV-----AQPEQAAIVVRNARFFLRDGGYMLMA 181 (233)
T ss_dssp GGGGTTTCCCEEEEEECC-----CCTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccccccccceEEEEEEec-----cCChhHHHHHHHHHHhccCCCEEEEE
Confidence 42 2 37899999743 23345788999999999999999864
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.47 E-value=2e-13 Score=127.05 Aligned_cols=103 Identities=17% Similarity=0.221 Sum_probs=87.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccc-cC---CCceeEEE
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQA-G-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDV-EI---DEEVDVII 183 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l-~~---~~~~DlVv 183 (428)
.++.+|||||||+|..+..+++. + ..+|+++|++ .+++.|++++...++.++++++.+|+.+. +. .++||+|+
T Consensus 62 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~ 141 (248)
T 3tfw_A 62 TQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIF 141 (248)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEE
T ss_pred cCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEE
Confidence 56789999999999999999997 2 4599999999 99999999999999988899999998773 22 24899999
Q ss_pred EecchhhhcchhhHHHHHHHHhcccccCeEEEccCC
Q 014247 184 SEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYA 219 (428)
Q Consensus 184 s~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 219 (428)
+.. .......+++.+.++|+|||++++...
T Consensus 142 ~d~------~~~~~~~~l~~~~~~LkpGG~lv~~~~ 171 (248)
T 3tfw_A 142 IDA------DKPNNPHYLRWALRYSRPGTLIIGDNV 171 (248)
T ss_dssp ECS------CGGGHHHHHHHHHHTCCTTCEEEEECC
T ss_pred ECC------chHHHHHHHHHHHHhcCCCeEEEEeCC
Confidence 854 234467789999999999999997654
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.47 E-value=5.6e-14 Score=127.86 Aligned_cols=152 Identities=15% Similarity=0.069 Sum_probs=99.2
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEeCh-HHHHHHHHHH----HHCCCCCcEEEEEcccccccCCCceeEEE
Q 014247 110 FIEGKVVVDVGCGTGILSIFCAQAG-AKRVYAVDAS-DIAVQANEVV----KANNLTDKVIVLHGRVEDVEIDEEVDVII 183 (428)
Q Consensus 110 ~~~~~~VLDiGcGtG~ls~~la~~g-~~~V~giD~s-~~~~~a~~~~----~~~~~~~~v~~~~~d~~~l~~~~~~DlVv 183 (428)
..++.+|||||||+|.++..+++.+ ..+|+|+|+| .|++.+.+.+ ...++. +++++++|+.+++.+...|.|+
T Consensus 25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~-~v~~~~~d~~~l~~~~~~d~v~ 103 (218)
T 3mq2_A 25 SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLP-NLLYLWATAERLPPLSGVGELH 103 (218)
T ss_dssp TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCT-TEEEEECCSTTCCSCCCEEEEE
T ss_pred ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCC-ceEEEecchhhCCCCCCCCEEE
Confidence 4678899999999999999999983 4599999999 8777543333 234454 5999999999988762227766
Q ss_pred Eecchhhh--cchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhhccCCCC----cchhHHHHHhc
Q 014247 184 SEWMGYML--LYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGID----MSAMMPLAKQC 257 (428)
Q Consensus 184 s~~~~~~l--~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~l~~~ 257 (428)
.......+ ++..+...+++++.++|||||++++...... ..... .. ......+. ...+..++.++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~----~~~~~-~~----~~~~~~~~~~~~~~~l~~~l~~a 174 (218)
T 3mq2_A 104 VLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALNLHA----WRPSV-PE----VGEHPEPTPDSADEWLAPRYAEA 174 (218)
T ss_dssp EESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEEGGG----BTTBC-GG----GTTCCCCCHHHHHHHHHHHHHHT
T ss_pred EEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEecccc----ccccc-cc----cccCCccchHHHHHHHHHHHHHc
Confidence 42211112 1334458899999999999999987321100 00000 00 01111112 23467788999
Q ss_pred CCCCceEEeecCCc
Q 014247 258 AFEEPSVETITGEN 271 (428)
Q Consensus 258 Gf~~~~~~~~~~~~ 271 (428)
||+...++.+....
T Consensus 175 Gf~i~~~~~~~~~~ 188 (218)
T 3mq2_A 175 GWKLADCRYLEPEE 188 (218)
T ss_dssp TEEEEEEEEECHHH
T ss_pred CCCceeeeccchhh
Confidence 99988877765443
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.47 E-value=2.9e-13 Score=122.76 Aligned_cols=101 Identities=20% Similarity=0.228 Sum_probs=79.2
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccc----cCCCceeEE
Q 014247 109 SFIEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDV----EIDEEVDVI 182 (428)
Q Consensus 109 ~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l----~~~~~~DlV 182 (428)
...++.+|||+|||+|.++..+++. +..+|+|+|+| .+++.+.+.++.. .++.++.+|+.+. ++.++||+|
T Consensus 54 ~~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~---~~v~~~~~d~~~~~~~~~~~~~fD~V 130 (210)
T 1nt2_A 54 KLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER---NNIIPLLFDASKPWKYSGIVEKVDLI 130 (210)
T ss_dssp CCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC---SSEEEECSCTTCGGGTTTTCCCEEEE
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC---CCeEEEEcCCCCchhhcccccceeEE
Confidence 4467899999999999999999886 34589999999 8877766665543 3588999998774 345889999
Q ss_pred EEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 183 ISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 183 vs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
+++. ........+++++.++|||||++++.
T Consensus 131 ~~~~-----~~~~~~~~~l~~~~r~LkpgG~l~i~ 160 (210)
T 1nt2_A 131 YQDI-----AQKNQIEILKANAEFFLKEKGEVVIM 160 (210)
T ss_dssp EECC-----CSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEec-----cChhHHHHHHHHHHHHhCCCCEEEEE
Confidence 9863 22233556689999999999999875
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.47 E-value=3.7e-13 Score=121.55 Aligned_cols=110 Identities=21% Similarity=0.178 Sum_probs=88.6
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC-C
Q 014247 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI-D 176 (428)
Q Consensus 99 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~-~ 176 (428)
.....+.+.+...++.+|||||||+|.++..+++.+ .+|+++|++ .+++.|++++..+++. +++++.+|+.+... .
T Consensus 64 ~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~ 141 (210)
T 3lbf_A 64 YMVARMTELLELTPQSRVLEIGTGSGYQTAILAHLV-QHVCSVERIKGLQWQARRRLKNLDLH-NVSTRHGDGWQGWQAR 141 (210)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGGCCGGG
T ss_pred HHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHhC-CEEEEEecCHHHHHHHHHHHHHcCCC-ceEEEECCcccCCccC
Confidence 344455566667889999999999999999999984 599999999 9999999999988886 59999999987544 3
Q ss_pred CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCC
Q 014247 177 EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYA 219 (428)
Q Consensus 177 ~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 219 (428)
++||+|++.. .+.+.. ..+.++|+|||++++...
T Consensus 142 ~~~D~i~~~~---~~~~~~------~~~~~~L~pgG~lv~~~~ 175 (210)
T 3lbf_A 142 APFDAIIVTA---APPEIP------TALMTQLDEGGILVLPVG 175 (210)
T ss_dssp CCEEEEEESS---BCSSCC------THHHHTEEEEEEEEEEEC
T ss_pred CCccEEEEcc---chhhhh------HHHHHhcccCcEEEEEEc
Confidence 7899999965 333332 256789999999987543
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.8e-13 Score=124.96 Aligned_cols=103 Identities=21% Similarity=0.213 Sum_probs=86.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC------CCceeE
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQA-G-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI------DEEVDV 181 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~------~~~~Dl 181 (428)
.++.+|||||||+|..+..+++. + ..+|+++|++ .+++.|++++...++.++++++++|+.+... .++||+
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~ 136 (223)
T 3duw_A 57 QGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDF 136 (223)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSE
T ss_pred hCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCE
Confidence 56789999999999999999997 2 3499999999 9999999999999998889999999876421 157999
Q ss_pred EEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCC
Q 014247 182 IISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYA 219 (428)
Q Consensus 182 Vvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 219 (428)
|++... ......+++.+.++|+|||++++...
T Consensus 137 v~~d~~------~~~~~~~l~~~~~~L~pgG~lv~~~~ 168 (223)
T 3duw_A 137 IFIDAD------KQNNPAYFEWALKLSRPGTVIIGDNV 168 (223)
T ss_dssp EEECSC------GGGHHHHHHHHHHTCCTTCEEEEESC
T ss_pred EEEcCC------cHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 998541 33467889999999999999987654
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.46 E-value=6.8e-14 Score=121.78 Aligned_cols=99 Identities=18% Similarity=0.105 Sum_probs=80.7
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC-----CCceeEEEEe
Q 014247 112 EGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI-----DEEVDVIISE 185 (428)
Q Consensus 112 ~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~-----~~~~DlVvs~ 185 (428)
++.+|||+|||+|.++..+++.+. +|+|+|++ .+++.|++++..+++ +++++++|+.+... .++||+|+++
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~D~i~~~ 117 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGL--GARVVALPVEVFLPEAKAQGERFTVAFMA 117 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTC--CCEEECSCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHHcCC--ceEEEeccHHHHHHhhhccCCceEEEEEC
Confidence 778999999999999999999977 59999999 999999999988877 59999999887421 2379999997
Q ss_pred cchhhhcchhhHHHHHHHHh--cccccCeEEEccC
Q 014247 186 WMGYMLLYESMLGSVITARD--RWLKRGGLILPSY 218 (428)
Q Consensus 186 ~~~~~l~~~~~~~~~l~~~~--~~LkpgG~lv~~~ 218 (428)
...+ .....+++.+. ++|+|||.+++..
T Consensus 118 ~~~~-----~~~~~~~~~~~~~~~L~~gG~~~~~~ 147 (171)
T 1ws6_A 118 PPYA-----MDLAALFGELLASGLVEAGGLYVLQH 147 (171)
T ss_dssp CCTT-----SCTTHHHHHHHHHTCEEEEEEEEEEE
T ss_pred CCCc-----hhHHHHHHHHHhhcccCCCcEEEEEe
Confidence 6322 23445556665 9999999998754
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=3.6e-13 Score=132.98 Aligned_cols=117 Identities=21% Similarity=0.304 Sum_probs=94.7
Q ss_pred HHHHHHHHhcc--CCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc
Q 014247 98 ETYRAAIMQNQ--SFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE 174 (428)
Q Consensus 98 ~~~~~~i~~~~--~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~ 174 (428)
+.+.+.+...+ ...++.+|||+|||+|.++..+++.++ +|+++|++ .+++.|++++..+++. ++++++|+.+..
T Consensus 217 ~~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~g~-~V~gvDis~~al~~A~~n~~~~~~~--v~~~~~D~~~~~ 293 (381)
T 3dmg_A 217 LLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMGA-EVVGVEDDLASVLSLQKGLEANALK--AQALHSDVDEAL 293 (381)
T ss_dssp HHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHTTC-EEEEEESBHHHHHHHHHHHHHTTCC--CEEEECSTTTTS
T ss_pred HHHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCC--eEEEEcchhhcc
Confidence 44555555443 235788999999999999999999976 99999999 9999999999998874 899999999876
Q ss_pred CC-CceeEEEEecchhhh--cchhhHHHHHHHHhcccccCeEEEcc
Q 014247 175 ID-EEVDVIISEWMGYML--LYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 175 ~~-~~~DlVvs~~~~~~l--~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
.+ ++||+|+++...+.. ........+++.+.++|+|||.+++.
T Consensus 294 ~~~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv 339 (381)
T 3dmg_A 294 TEEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLV 339 (381)
T ss_dssp CTTCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccCCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEE
Confidence 65 899999998632221 11456889999999999999999864
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.6e-13 Score=125.30 Aligned_cols=103 Identities=21% Similarity=0.203 Sum_probs=87.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC--C-----Ccee
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQA-G-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI--D-----EEVD 180 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~--~-----~~~D 180 (428)
.++.+|||||||+|..+..+++. + ..+|+++|++ .+++.|++++...++.++++++++|+.+... . ++||
T Consensus 63 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 142 (225)
T 3tr6_A 63 MQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYD 142 (225)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEE
T ss_pred hCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCcc
Confidence 46789999999999999999987 2 4599999999 9999999999999998889999999866421 1 6899
Q ss_pred EEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCC
Q 014247 181 VIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYA 219 (428)
Q Consensus 181 lVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 219 (428)
+|++.. .......+++.+.++|+|||++++...
T Consensus 143 ~v~~~~------~~~~~~~~l~~~~~~L~pgG~lv~~~~ 175 (225)
T 3tr6_A 143 LIYIDA------DKANTDLYYEESLKLLREGGLIAVDNV 175 (225)
T ss_dssp EEEECS------CGGGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred EEEECC------CHHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 999754 234577889999999999999997654
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.5e-13 Score=128.84 Aligned_cols=111 Identities=17% Similarity=0.156 Sum_probs=88.9
Q ss_pred hccCCCCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEeCh-HHHHHHHHHHHH---CCCCCcEEEEEccccccc------
Q 014247 106 QNQSFIEGKVVVDVGCGTGILSIFCAQAG-AKRVYAVDAS-DIAVQANEVVKA---NNLTDKVIVLHGRVEDVE------ 174 (428)
Q Consensus 106 ~~~~~~~~~~VLDiGcGtG~ls~~la~~g-~~~V~giD~s-~~~~~a~~~~~~---~~~~~~v~~~~~d~~~l~------ 174 (428)
..+...++.+|||+|||+|.+++.+++.. ..+|+|+|++ .+++.|++++.. +++.++++++++|+.++.
T Consensus 30 ~~~~~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~ 109 (260)
T 2ozv_A 30 SLVADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEA 109 (260)
T ss_dssp HTCCCCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHT
T ss_pred HHhcccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhh
Confidence 34445678899999999999999999884 3599999999 999999999988 888878999999998872
Q ss_pred -C-CCceeEEEEecchhhh---------------cchhhHHHHHHHHhcccccCeEEEc
Q 014247 175 -I-DEEVDVIISEWMGYML---------------LYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 175 -~-~~~~DlVvs~~~~~~l---------------~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
+ +++||+|++++..+.. .....+..+++.+.++|+|||.+++
T Consensus 110 ~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~ 168 (260)
T 2ozv_A 110 GLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSL 168 (260)
T ss_dssp TCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEE
T ss_pred ccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEE
Confidence 2 4789999998532111 0112378899999999999999986
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.46 E-value=4.5e-13 Score=122.78 Aligned_cols=106 Identities=19% Similarity=0.238 Sum_probs=84.9
Q ss_pred CCCCCEEEEEcCC-CcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc-C-CCceeEEEEe
Q 014247 110 FIEGKVVVDVGCG-TGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE-I-DEEVDVIISE 185 (428)
Q Consensus 110 ~~~~~~VLDiGcG-tG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~-~-~~~~DlVvs~ 185 (428)
..++.+|||+||| +|.++..+++.+..+|+|+|++ .+++.|++++..+++ +++++++|+..+. . +++||+|+++
T Consensus 53 ~~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~~~fD~I~~n 130 (230)
T 3evz_A 53 LRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNS--NVRLVKSNGGIIKGVVEGTFDVIFSA 130 (230)
T ss_dssp CCSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTC--CCEEEECSSCSSTTTCCSCEEEEEEC
T ss_pred cCCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCC--CcEEEeCCchhhhhcccCceeEEEEC
Confidence 3678999999999 9999999999844499999999 999999999999988 6999999975432 2 3899999997
Q ss_pred cchhhh----------------cchhhHHHHHHHHhcccccCeEEEcc
Q 014247 186 WMGYML----------------LYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 186 ~~~~~l----------------~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
+..+.. .....+..+++.+.++|+|||++++.
T Consensus 131 pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 178 (230)
T 3evz_A 131 PPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALY 178 (230)
T ss_dssp CCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred CCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEE
Confidence 532111 11223578999999999999999863
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.45 E-value=3e-13 Score=131.29 Aligned_cols=157 Identities=16% Similarity=0.140 Sum_probs=110.9
Q ss_pred HHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeChHHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeE
Q 014247 103 AIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDV 181 (428)
Q Consensus 103 ~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~Dl 181 (428)
.+.+.....+ .+|||||||+|.++..+++. +..+++++|+..+++.|++++...++.++++++.+|+.+ +.+++||+
T Consensus 159 ~~~~~~~~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~D~ 236 (334)
T 2ip2_A 159 EIPRLLDFRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGGDMLQ-EVPSNGDI 236 (334)
T ss_dssp HHHHHSCCTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEECTTCTHHHHHHTHHHHHTTSEEEEESCTTT-CCCSSCSE
T ss_pred HHHHhCCCCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHhhcCCCCcEEEecCCCCC-CCCCCCCE
Confidence 3444444445 89999999999999999987 334899999987888898888777777789999999987 55678999
Q ss_pred EEEecchhhhcchh--hHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhh--h--hccCCCCcchhHHHHH
Q 014247 182 IISEWMGYMLLYES--MLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDF--W--RNVYGIDMSAMMPLAK 255 (428)
Q Consensus 182 Vvs~~~~~~l~~~~--~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~l~~~l~ 255 (428)
|++.. ++++.. ....+++++.+.|+|||++++...... -............ + ......+..++..+++
T Consensus 237 v~~~~---vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~---~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~ 310 (334)
T 2ip2_A 237 YLLSR---IIGDLDEAASLRLLGNCREAMAGDGRVVVIERTIS---ASEPSPMSVLWDVHLFMACAGRHRTTEEVVDLLG 310 (334)
T ss_dssp EEEES---CGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBC---SSSCCHHHHHHHHHHHHHHSCCCCBHHHHHHHHH
T ss_pred EEEch---hccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccC---CCCCcchhHHhhhHhHhhCCCcCCCHHHHHHHHH
Confidence 99876 444333 345899999999999999987654221 0001111111111 1 1122346788999999
Q ss_pred hcCCCCceEEee
Q 014247 256 QCAFEEPSVETI 267 (428)
Q Consensus 256 ~~Gf~~~~~~~~ 267 (428)
++||+...+...
T Consensus 311 ~aGf~~~~~~~~ 322 (334)
T 2ip2_A 311 RGGFAVERIVDL 322 (334)
T ss_dssp HTTEEEEEEEEE
T ss_pred HCCCceeEEEEC
Confidence 999988766544
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.45 E-value=1.9e-13 Score=132.55 Aligned_cols=106 Identities=21% Similarity=0.095 Sum_probs=88.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCC-cEEEEEcccccccC-----CCceeEEE
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTD-KVIVLHGRVEDVEI-----DEEVDVII 183 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~-~v~~~~~d~~~l~~-----~~~~DlVv 183 (428)
.++.+|||+|||+|.+++.+++.|+ +|+++|+| .+++.|++++..+++.+ +++++++|+.++.. .++||+|+
T Consensus 152 ~~~~~VLDlgcGtG~~sl~la~~ga-~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii 230 (332)
T 2igt_A 152 DRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL 230 (332)
T ss_dssp SSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred CCCCcEEEcccccCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEE
Confidence 4678999999999999999999988 99999999 99999999999999876 59999999987532 36899999
Q ss_pred Eecchhh-------hcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 184 SEWMGYM-------LLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 184 s~~~~~~-------l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
+++..+. +....+...++..+.++|+|||.+++.
T Consensus 231 ~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~ 271 (332)
T 2igt_A 231 TDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVL 271 (332)
T ss_dssp ECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEE
T ss_pred ECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEE
Confidence 9764221 223456788999999999999987653
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.45 E-value=3.2e-13 Score=126.38 Aligned_cols=110 Identities=22% Similarity=0.271 Sum_probs=86.5
Q ss_pred HHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC
Q 014247 98 ETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID 176 (428)
Q Consensus 98 ~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~ 176 (428)
....+.+...+. ++.+|||||||+|.++..+++.+. +|+|+|+| .+++.|+++.. . .++++|+.+++++
T Consensus 42 ~~~~~~l~~~~~--~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~-----~--~~~~~d~~~~~~~ 111 (260)
T 2avn_A 42 RLIGSFLEEYLK--NPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEVAREKGV-----K--NVVEAKAEDLPFP 111 (260)
T ss_dssp HHHHHHHHHHCC--SCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHHTC-----S--CEEECCTTSCCSC
T ss_pred HHHHHHHHHhcC--CCCeEEEeCCCcCHHHHHHHHcCC-eEEEEeCCHHHHHHHHhhcC-----C--CEEECcHHHCCCC
Confidence 344555555543 788999999999999999999876 89999999 99999887643 1 2788999988764
Q ss_pred -CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCC
Q 014247 177 -EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYA 219 (428)
Q Consensus 177 -~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 219 (428)
++||+|++... .++...++..+++++.++|+|||.+++...
T Consensus 112 ~~~fD~v~~~~~--~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 153 (260)
T 2avn_A 112 SGAFEAVLALGD--VLSYVENKDKAFSEIRRVLVPDGLLIATVD 153 (260)
T ss_dssp TTCEEEEEECSS--HHHHCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCEEEEEEcch--hhhccccHHHHHHHHHHHcCCCeEEEEEeC
Confidence 78999998531 233324589999999999999999997643
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=2.1e-13 Score=128.32 Aligned_cols=107 Identities=21% Similarity=0.192 Sum_probs=90.3
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCce
Q 014247 101 RAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEV 179 (428)
Q Consensus 101 ~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~ 179 (428)
+..+...+ .+|.+|||+|||+|.+++.+|+.|+.+|+++|++ ..++.++++++.|++.++++++++|+.++...+.|
T Consensus 116 r~ri~~~~--~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~~~~ 193 (278)
T 3k6r_A 116 RVRMAKVA--KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIA 193 (278)
T ss_dssp HHHHHHHC--CTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCE
T ss_pred HHHHHHhc--CCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccccCC
Confidence 44555554 6899999999999999999999988899999999 99999999999999999999999999998777899
Q ss_pred eEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 180 DVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 180 DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
|.|+.+.+... ..++..+.++|++||.+.+
T Consensus 194 D~Vi~~~p~~~-------~~~l~~a~~~lk~gG~ih~ 223 (278)
T 3k6r_A 194 DRILMGYVVRT-------HEFIPKALSIAKDGAIIHY 223 (278)
T ss_dssp EEEEECCCSSG-------GGGHHHHHHHEEEEEEEEE
T ss_pred CEEEECCCCcH-------HHHHHHHHHHcCCCCEEEE
Confidence 99998653221 2345566688999998864
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.7e-13 Score=134.74 Aligned_cols=149 Identities=13% Similarity=0.107 Sum_probs=107.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEeChHHHHHHHHHHHHCCCCCcEEEEEcccccc--cCCCceeEEEEecc
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAG-AKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDV--EIDEEVDVIISEWM 187 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g-~~~V~giD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~l--~~~~~~DlVvs~~~ 187 (428)
....+|||||||+|.++..+++.. ..+++++|+..+++.|++++...++.++++++.+|+.+. +.+++||+|++..
T Consensus 178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p~~~D~v~~~~- 256 (363)
T 3dp7_A 178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPTGFDAVWMSQ- 256 (363)
T ss_dssp GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEECHHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCCCCCSEEEEES-
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeCHHHHHHHHHHHHhcCcccceEEEEccccccCCCCCCCcCEEEEec-
Confidence 456899999999999999999862 348999999889999999988888878899999999886 3557899999876
Q ss_pred hhhhcch--hhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccc--h--h-hhhhh--hhc--cCCCCcchhHHHHHh
Q 014247 188 GYMLLYE--SMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDR--Y--S-ESIDF--WRN--VYGIDMSAMMPLAKQ 256 (428)
Q Consensus 188 ~~~l~~~--~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~--~--~-~~~~~--~~~--~~~~~~~~l~~~l~~ 256 (428)
++++. .+...+++++.+.|+|||++++....... ..... + . ....+ +.. ....+..++..++++
T Consensus 257 --vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~ 331 (363)
T 3dp7_A 257 --FLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDR---QRYETASYCLTQISLYFTAMANGNSKMFHSDDLIRCIEN 331 (363)
T ss_dssp --CSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTS---CSSHHHHHHHHHHHHHHHHSSCSSCCSCCHHHHHHHHHT
T ss_pred --hhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCC---ccccchhhHHHHhhhhHHhhhCCCCcccCHHHHHHHHHH
Confidence 44433 34568899999999999999875432110 00000 0 0 00001 011 112367889999999
Q ss_pred cCCCCceEE
Q 014247 257 CAFEEPSVE 265 (428)
Q Consensus 257 ~Gf~~~~~~ 265 (428)
+||+.+.+.
T Consensus 332 AGf~~v~~~ 340 (363)
T 3dp7_A 332 AGLEVEEIQ 340 (363)
T ss_dssp TTEEESCCC
T ss_pred cCCeEEEEE
Confidence 999876544
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.44 E-value=3e-13 Score=132.22 Aligned_cols=154 Identities=16% Similarity=0.164 Sum_probs=104.9
Q ss_pred HHHhccCCCCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEeChHHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeE
Q 014247 103 AIMQNQSFIEGKVVVDVGCGTGILSIFCAQAG-AKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDV 181 (428)
Q Consensus 103 ~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g-~~~V~giD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~Dl 181 (428)
.+.+.....++.+|||||||+|.++..+++.. ..+++++|++.++. ++++...++.++++++.+|+. .+.+ +||+
T Consensus 175 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~--~~~~~~~~~~~~v~~~~~d~~-~~~p-~~D~ 250 (348)
T 3lst_A 175 ILARAGDFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVA--RHRLDAPDVAGRWKVVEGDFL-REVP-HADV 250 (348)
T ss_dssp HHHHHSCCCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHHHHT--TCCCCCGGGTTSEEEEECCTT-TCCC-CCSE
T ss_pred HHHHhCCccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCHHHhh--cccccccCCCCCeEEEecCCC-CCCC-CCcE
Confidence 34445555678899999999999999999863 33899999985544 333333455678999999996 3444 8999
Q ss_pred EEEecchhhhcchhhH--HHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhh--hhh--ccCCCCcchhHHHHH
Q 014247 182 IISEWMGYMLLYESML--GSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESID--FWR--NVYGIDMSAMMPLAK 255 (428)
Q Consensus 182 Vvs~~~~~~l~~~~~~--~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~l~~~l~ 255 (428)
|++.. ++++..+. ..++++++++|||||++++....... ........... .+. .....+.+++..+++
T Consensus 251 v~~~~---vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~---~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~ 324 (348)
T 3lst_A 251 HVLKR---ILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPE---GNDAHQSKEMDFMMLAARTGQERTAAELEPLFT 324 (348)
T ss_dssp EEEES---CGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCS---SSSCCHHHHHHHHHHHTTSCCCCBHHHHHHHHH
T ss_pred EEEeh---hccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCC---CCCcchhhhcChhhhhcCCCcCCCHHHHHHHHH
Confidence 99876 55555544 69999999999999999875532211 11111111111 111 112345788999999
Q ss_pred hcCCCCceEEe
Q 014247 256 QCAFEEPSVET 266 (428)
Q Consensus 256 ~~Gf~~~~~~~ 266 (428)
++||+...+..
T Consensus 325 ~aGf~~~~~~~ 335 (348)
T 3lst_A 325 AAGLRLDRVVG 335 (348)
T ss_dssp HTTEEEEEEEE
T ss_pred HCCCceEEEEE
Confidence 99998876654
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=3e-13 Score=123.41 Aligned_cols=105 Identities=12% Similarity=0.125 Sum_probs=83.4
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccc-c---CCCceeEEEEe
Q 014247 112 EGKVVVDVGCGTGILSIFCAQAG-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDV-E---IDEEVDVIISE 185 (428)
Q Consensus 112 ~~~~VLDiGcGtG~ls~~la~~g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l-~---~~~~~DlVvs~ 185 (428)
++.+|||||||+|.++..+|+.. ...|+|||++ .++..|++++..+++.+ +.++++|+.++ + .+++||.|++.
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~n-v~~~~~Da~~~l~~~~~~~~~d~v~~~ 112 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSN-LRVMCHDAVEVLHKMIPDNSLRMVQLF 112 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSS-EEEECSCHHHHHHHHSCTTCEEEEEEE
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCc-EEEEECCHHHHHHHHcCCCChheEEEe
Confidence 56899999999999999999874 3489999999 99999999999998875 99999999885 2 24899999985
Q ss_pred cchhhhcchhh------HHHHHHHHhcccccCeEEEccC
Q 014247 186 WMGYMLLYESM------LGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 186 ~~~~~l~~~~~------~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
.... ...... ...+++.+.++|||||.+++.+
T Consensus 113 ~~~p-~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~t 150 (218)
T 3dxy_A 113 FPDP-WHKARHNKRRIVQVPFAELVKSKLQLGGVFHMAT 150 (218)
T ss_dssp SCCC-CCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCC-ccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEe
Confidence 3111 111111 1358999999999999998653
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.44 E-value=5.1e-13 Score=126.68 Aligned_cols=116 Identities=20% Similarity=0.278 Sum_probs=88.6
Q ss_pred HHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeC-h-HHHHHHHHHH-----HHCCCC----CcEEEE
Q 014247 98 ETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDA-S-DIAVQANEVV-----KANNLT----DKVIVL 166 (428)
Q Consensus 98 ~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~-s-~~~~~a~~~~-----~~~~~~----~~v~~~ 166 (428)
..+.+.+.......++.+|||||||+|.++..+++.|+.+|+|+|+ + .+++.|++++ ..+++. ++++++
T Consensus 65 ~~l~~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~ 144 (281)
T 3bzb_A 65 RALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVV 144 (281)
T ss_dssp HHHHHHHHHCGGGTTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEE
T ss_pred HHHHHHHHhcchhcCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEE
Confidence 3456666666555678899999999999999999988779999999 8 9999999998 555554 468888
Q ss_pred Eccccc----cc---CCCceeEEEEecchhhhcchhhHHHHHHHHhcccc---c--CeEEEc
Q 014247 167 HGRVED----VE---IDEEVDVIISEWMGYMLLYESMLGSVITARDRWLK---R--GGLILP 216 (428)
Q Consensus 167 ~~d~~~----l~---~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~Lk---p--gG~lv~ 216 (428)
..+..+ +. ..++||+|++.. ++.+..+...+++.+.++|+ | ||++++
T Consensus 145 ~~~~~~~~~~~~~~~~~~~fD~Ii~~d---vl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v 203 (281)
T 3bzb_A 145 PYRWGDSPDSLQRCTGLQRFQVVLLAD---LLSFHQAHDALLRSVKMLLALPANDPTAVALV 203 (281)
T ss_dssp ECCTTSCTHHHHHHHSCSSBSEEEEES---CCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEE
T ss_pred EecCCCccHHHHhhccCCCCCEEEEeC---cccChHHHHHHHHHHHHHhcccCCCCCCEEEE
Confidence 666433 21 247899999844 56667778999999999999 9 998765
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.44 E-value=8.8e-13 Score=115.80 Aligned_cols=108 Identities=25% Similarity=0.347 Sum_probs=89.2
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC-
Q 014247 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID- 176 (428)
Q Consensus 99 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~- 176 (428)
...+.+...+...++.+|||+|||+|.++..+++ +..+|+|+|++ .+++.|++++..+++. +++++++|+.+ +++
T Consensus 22 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~~-~~~~ 98 (183)
T 2yxd_A 22 EIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAK-RCKFVYAIDYLDGAIEVTKQNLAKFNIK-NCQIIKGRAED-VLDK 98 (183)
T ss_dssp HHHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHT-TSSEEEEEECSHHHHHHHHHHHHHTTCC-SEEEEESCHHH-HGGG
T ss_pred HHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEECCccc-cccC
Confidence 3445555555667889999999999999999999 56699999999 9999999999998884 59999999987 333
Q ss_pred CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccC
Q 014247 177 EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 177 ~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
++||+|++... .++..+++.+.++ |||.+++..
T Consensus 99 ~~~D~i~~~~~-------~~~~~~l~~~~~~--~gG~l~~~~ 131 (183)
T 2yxd_A 99 LEFNKAFIGGT-------KNIEKIIEILDKK--KINHIVANT 131 (183)
T ss_dssp CCCSEEEECSC-------SCHHHHHHHHHHT--TCCEEEEEE
T ss_pred CCCcEEEECCc-------ccHHHHHHHHhhC--CCCEEEEEe
Confidence 68999999653 4578889998887 999998653
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.44 E-value=8.6e-13 Score=131.49 Aligned_cols=115 Identities=17% Similarity=0.206 Sum_probs=90.2
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHH-------HHHHHHCCCC-CcEEEEEcc
Q 014247 100 YRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQA-------NEVVKANNLT-DKVIVLHGR 169 (428)
Q Consensus 100 ~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a-------~~~~~~~~~~-~~v~~~~~d 169 (428)
....+.+.+...++.+|||||||+|.++..+|+. |..+|+|+|++ .+++.| ++++...++. .+++++++|
T Consensus 230 ~v~~ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD 309 (433)
T 1u2z_A 230 FLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKK 309 (433)
T ss_dssp HHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESS
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcC
Confidence 3445556666778999999999999999999986 66789999999 888888 8888888853 569999875
Q ss_pred cccc--c---CCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccC
Q 014247 170 VEDV--E---IDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 170 ~~~l--~---~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
.... + ..++||+|+++. .+ ...++..++.++.+.|||||++++..
T Consensus 310 ~~~~~~~~~~~~~~FDvIvvn~---~l-~~~d~~~~L~el~r~LKpGG~lVi~d 359 (433)
T 1u2z_A 310 SFVDNNRVAELIPQCDVILVNN---FL-FDEDLNKKVEKILQTAKVGCKIISLK 359 (433)
T ss_dssp CSTTCHHHHHHGGGCSEEEECC---TT-CCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred ccccccccccccCCCCEEEEeC---cc-ccccHHHHHHHHHHhCCCCeEEEEee
Confidence 4321 1 137899999864 23 23567888999999999999998764
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.43 E-value=5.6e-13 Score=120.96 Aligned_cols=106 Identities=18% Similarity=0.178 Sum_probs=84.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc--C-CCceeEEEEe
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAG-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE--I-DEEVDVIISE 185 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~--~-~~~~DlVvs~ 185 (428)
.++.+|||||||+|.++..+++.. ..+|+|+|++ .++..|++++..+++ .++.++++|+.+++ + +++||+|+++
T Consensus 40 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~D~i~~~ 118 (214)
T 1yzh_A 40 NDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGV-PNIKLLWVDGSDLTDYFEDGEIDRLYLN 118 (214)
T ss_dssp SCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-SSEEEEECCSSCGGGTSCTTCCSEEEEE
T ss_pred CCCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCC-CCEEEEeCCHHHHHhhcCCCCCCEEEEE
Confidence 457899999999999999999873 3499999999 999999999998888 46999999998876 4 3789999987
Q ss_pred cchhhhc--ch---hhHHHHHHHHhcccccCeEEEcc
Q 014247 186 WMGYMLL--YE---SMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 186 ~~~~~l~--~~---~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
....... +. .....++..+.++|+|||.+++.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 155 (214)
T 1yzh_A 119 FSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFK 155 (214)
T ss_dssp SCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEE
T ss_pred CCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEE
Confidence 5211000 00 02367899999999999999864
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.43 E-value=6.8e-13 Score=130.78 Aligned_cols=116 Identities=16% Similarity=0.116 Sum_probs=92.0
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEeCh-HHHHHHHHHHHHCCCCC--cEEEEEcccccccCC
Q 014247 101 RAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAG-AKRVYAVDAS-DIAVQANEVVKANNLTD--KVIVLHGRVEDVEID 176 (428)
Q Consensus 101 ~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g-~~~V~giD~s-~~~~~a~~~~~~~~~~~--~v~~~~~d~~~l~~~ 176 (428)
.+.+.+.+...++.+|||+|||+|.++..+++.+ ..+|+|+|+| .+++.|++++..+++.+ +++++.+|+.+...+
T Consensus 211 ~~~ll~~l~~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~~ 290 (375)
T 4dcm_A 211 ARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEP 290 (375)
T ss_dssp HHHHHHTCCCSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCCT
T ss_pred HHHHHHhCcccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCCC
Confidence 4455666666677899999999999999999984 4599999999 99999999999988754 588899999874444
Q ss_pred CceeEEEEecchhhhc--chhhHHHHHHHHhcccccCeEEEc
Q 014247 177 EEVDVIISEWMGYMLL--YESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 177 ~~~DlVvs~~~~~~l~--~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
++||+|+++...+... .......+++.+.++|+|||++++
T Consensus 291 ~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 332 (375)
T 4dcm_A 291 FRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYI 332 (375)
T ss_dssp TCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEE
T ss_pred CCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEE
Confidence 7999999987432211 122345789999999999999986
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.42 E-value=8.8e-13 Score=138.18 Aligned_cols=116 Identities=15% Similarity=0.150 Sum_probs=91.0
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCC--CeEEEEeCh-HHHHHHHHHHHHC------CCCCcEEEEEccc
Q 014247 100 YRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGA--KRVYAVDAS-DIAVQANEVVKAN------NLTDKVIVLHGRV 170 (428)
Q Consensus 100 ~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~--~~V~giD~s-~~~~~a~~~~~~~------~~~~~v~~~~~d~ 170 (428)
..+.+.+.+...++.+|||||||+|.++..+++.+. .+|+|+|++ .|++.|++++... ++. +++++++|+
T Consensus 709 Rle~LLelL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~-nVefiqGDa 787 (950)
T 3htx_A 709 RVEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVK-SATLYDGSI 787 (950)
T ss_dssp HHHHHHHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCS-EEEEEESCT
T ss_pred HHHHHHHHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCC-ceEEEECch
Confidence 344444444445789999999999999999999862 599999999 9999998866532 333 699999999
Q ss_pred ccccCC-CceeEEEEecchhhhcchhh--HHHHHHHHhcccccCeEEEccCCe
Q 014247 171 EDVEID-EEVDVIISEWMGYMLLYESM--LGSVITARDRWLKRGGLILPSYAT 220 (428)
Q Consensus 171 ~~l~~~-~~~DlVvs~~~~~~l~~~~~--~~~~l~~~~~~LkpgG~lv~~~~~ 220 (428)
.+++.. ++||+|++.. .++|..+ ...+++++.++|||| .+++..++
T Consensus 788 ~dLp~~d~sFDlVV~~e---VLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN 836 (950)
T 3htx_A 788 LEFDSRLHDVDIGTCLE---VIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPN 836 (950)
T ss_dssp TSCCTTSCSCCEEEEES---CGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECB
T ss_pred HhCCcccCCeeEEEEeC---chhhCChHHHHHHHHHHHHHcCCC-EEEEEecC
Confidence 998875 8999999965 4555443 446899999999999 77766544
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.42 E-value=8.3e-14 Score=125.74 Aligned_cols=120 Identities=21% Similarity=0.090 Sum_probs=74.2
Q ss_pred hhHHHHHHHHHhccCC-CCCCEEEEEcCCCcHHHHHHHHcCC-CeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccc
Q 014247 95 VRTETYRAAIMQNQSF-IEGKVVVDVGCGTGILSIFCAQAGA-KRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVE 171 (428)
Q Consensus 95 ~r~~~~~~~i~~~~~~-~~~~~VLDiGcGtG~ls~~la~~g~-~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~ 171 (428)
...+.+.+.+.+.+.. .++.+|||+|||+|.++..+++.+. .+|+|+|++ .+++.|++++..++. +++++++|+.
T Consensus 12 ~~~~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~ 89 (215)
T 4dzr_A 12 PDTEVLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGA--VVDWAAADGI 89 (215)
T ss_dssp HHHHHHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC---------------------CCHHHHH
T ss_pred ccHHHHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCC--ceEEEEcchH
Confidence 3344556666666544 6788999999999999999999843 399999999 999999999888776 6899999988
Q ss_pred cccCC-----CceeEEEEecchhhhc-----------------------chhhHHHHHHHHhcccccCeE-EEc
Q 014247 172 DVEID-----EEVDVIISEWMGYMLL-----------------------YESMLGSVITARDRWLKRGGL-ILP 216 (428)
Q Consensus 172 ~l~~~-----~~~DlVvs~~~~~~l~-----------------------~~~~~~~~l~~~~~~LkpgG~-lv~ 216 (428)
+.... ++||+|+++...+... .......+++.+.++|+|||+ +++
T Consensus 90 ~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 163 (215)
T 4dzr_A 90 EWLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFL 163 (215)
T ss_dssp HHHHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEE
T ss_pred hhhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 73222 7999999975211100 001127788999999999999 554
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.42 E-value=1.2e-13 Score=128.89 Aligned_cols=150 Identities=10% Similarity=0.063 Sum_probs=94.8
Q ss_pred CCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccc---cCC----CceeEE
Q 014247 112 EGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDV---EID----EEVDVI 182 (428)
Q Consensus 112 ~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l---~~~----~~~DlV 182 (428)
++.+|||+|||+|.++..+++. ...+|+|+|++ .+++.|++++..+++.++++++++|+.+. .++ ++||+|
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i 144 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 144 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence 5779999999999999888876 23599999999 99999999999999988899999997762 232 489999
Q ss_pred EEecchhhhc-c---h--------hhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhhccCCC--Ccc
Q 014247 183 ISEWMGYMLL-Y---E--------SMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGI--DMS 248 (428)
Q Consensus 183 vs~~~~~~l~-~---~--------~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 248 (428)
++++..+... . . .....++..+.++|||||.+.+...... ....+.....+.....+. ...
T Consensus 145 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~~~~~-----~~~~~l~~~g~~~~~~~~~~~~~ 219 (254)
T 2h00_A 145 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIH-----DSLQLKKRLRWYSCMLGKKCSLA 219 (254)
T ss_dssp EECCCCC-------------------------CTTTTHHHHTHHHHHHHHHH-----HHHHHGGGBSCEEEEESSTTSHH
T ss_pred EECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEHHHHH-----HHHhcccceEEEEECCCChhHHH
Confidence 9986322111 0 0 0123456788999999998765421000 000000000000001121 235
Q ss_pred hhHHHHHhcCCCCceEEe
Q 014247 249 AMMPLAKQCAFEEPSVET 266 (428)
Q Consensus 249 ~l~~~l~~~Gf~~~~~~~ 266 (428)
.+.++++++||..+.+..
T Consensus 220 ~~~~~l~~~Gf~~v~~~~ 237 (254)
T 2h00_A 220 PLKEELRIQGVPKVTYTE 237 (254)
T ss_dssp HHHHHHHHTTCSEEEEEE
T ss_pred HHHHHHHHcCCCceEEEE
Confidence 677889999998765543
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=6.2e-13 Score=131.69 Aligned_cols=108 Identities=22% Similarity=0.174 Sum_probs=89.2
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCC-cEEEEEcccccccC-----CCceeEEE
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTD-KVIVLHGRVEDVEI-----DEEVDVII 183 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~-~v~~~~~d~~~l~~-----~~~~DlVv 183 (428)
.++.+|||+|||+|.+++.+|+.|+++|+|+|+| .+++.|+++++.|++.+ +++++++|+.+... ..+||+|+
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii 290 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII 290 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEE
Confidence 5788999999999999999999888899999999 99999999999999975 79999999877321 25899999
Q ss_pred Eecchh------hhcchhhHHHHHHHHhcccccCeEEEccC
Q 014247 184 SEWMGY------MLLYESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 184 s~~~~~------~l~~~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
+++..+ ..........++..+.++|+|||.++++.
T Consensus 291 ~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~ 331 (385)
T 2b78_A 291 IDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIAST 331 (385)
T ss_dssp ECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 976432 11223446678888899999999998754
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=5.6e-13 Score=126.53 Aligned_cols=124 Identities=21% Similarity=0.240 Sum_probs=93.8
Q ss_pred ChhhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccc
Q 014247 93 DRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVE 171 (428)
Q Consensus 93 d~~r~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~ 171 (428)
....++.+.+.+...+...++.+|||+|||+|.++..+++.+..+|+|+|+| .+++.|++++..+++.++++++++|+.
T Consensus 104 pr~~te~lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~ 183 (284)
T 1nv8_A 104 PRPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFL 183 (284)
T ss_dssp CCTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTT
T ss_pred cChhHHHHHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcch
Confidence 3344556666665554334667999999999999999998734499999999 999999999999999888999999998
Q ss_pred cccCCCce---eEEEEecchhh--------hcchhh--------HHHHHHHHh-cccccCeEEEcc
Q 014247 172 DVEIDEEV---DVIISEWMGYM--------LLYESM--------LGSVITARD-RWLKRGGLILPS 217 (428)
Q Consensus 172 ~l~~~~~~---DlVvs~~~~~~--------l~~~~~--------~~~~l~~~~-~~LkpgG~lv~~ 217 (428)
+. .+++| |+|++++.... +.+++. ...+++.+. +.|+|||.+++.
T Consensus 184 ~~-~~~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e 248 (284)
T 1nv8_A 184 EP-FKEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLME 248 (284)
T ss_dssp GG-GGGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEE
T ss_pred hh-cccccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEE
Confidence 73 23578 99999742110 002221 126788999 999999999864
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.5e-13 Score=127.36 Aligned_cols=104 Identities=16% Similarity=0.129 Sum_probs=87.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC-------CCcee
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQA-G-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI-------DEEVD 180 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~-------~~~~D 180 (428)
.++.+|||||||+|..+..+|+. + ..+|+++|++ .+++.|+++++..++.++++++.+|+.+... .++||
T Consensus 59 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD 138 (242)
T 3r3h_A 59 TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFD 138 (242)
T ss_dssp HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEE
T ss_pred cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEe
Confidence 46789999999999999999986 2 4599999999 9999999999999998889999999876422 37899
Q ss_pred EEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCe
Q 014247 181 VIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYAT 220 (428)
Q Consensus 181 lVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 220 (428)
+|++.. .......+++.+.++|+|||++++....
T Consensus 139 ~V~~d~------~~~~~~~~l~~~~~~LkpGG~lv~d~~~ 172 (242)
T 3r3h_A 139 FIFIDA------DKTNYLNYYELALKLVTPKGLIAIDNIF 172 (242)
T ss_dssp EEEEES------CGGGHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred EEEEcC------ChHHhHHHHHHHHHhcCCCeEEEEECCc
Confidence 999864 1344677899999999999999986543
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.41 E-value=7.1e-13 Score=120.39 Aligned_cols=106 Identities=16% Similarity=0.180 Sum_probs=83.5
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc--C-CCceeEEEEe
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE--I-DEEVDVIISE 185 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~--~-~~~~DlVvs~ 185 (428)
.++.+|||||||+|.++..+|+. +..+|+|+|+| .++..|++++..+++. ++.++++|+.+++ + ++.||.|++.
T Consensus 37 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~-nv~~~~~d~~~l~~~~~~~~~d~v~~~ 115 (213)
T 2fca_A 37 NDNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQ-NVKLLNIDADTLTDVFEPGEVKRVYLN 115 (213)
T ss_dssp SCCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCS-SEEEECCCGGGHHHHCCTTSCCEEEEE
T ss_pred CCCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCC-CEEEEeCCHHHHHhhcCcCCcCEEEEE
Confidence 35679999999999999999987 34589999999 9999999999998885 4999999998864 3 3789999875
Q ss_pred cchhhhc--ch---hhHHHHHHHHhcccccCeEEEcc
Q 014247 186 WMGYMLL--YE---SMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 186 ~~~~~l~--~~---~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
....... +. .....+++.+.++|+|||.+++.
T Consensus 116 ~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~ 152 (213)
T 2fca_A 116 FSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFK 152 (213)
T ss_dssp SCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEE
T ss_pred CCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEE
Confidence 3110000 00 11367899999999999999864
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.41 E-value=8.7e-13 Score=121.27 Aligned_cols=103 Identities=20% Similarity=0.268 Sum_probs=87.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccc-c-C--CCceeEEEE
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAG-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDV-E-I--DEEVDVIIS 184 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l-~-~--~~~~DlVvs 184 (428)
.++.+|||||||+|.++..+++.. ..+|+++|++ .+++.|++++...++.++++++.+|+.+. + . +++||+|++
T Consensus 53 ~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 132 (233)
T 2gpy_A 53 AAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFI 132 (233)
T ss_dssp HCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEE
T ss_pred cCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEE
Confidence 577899999999999999999873 4599999999 99999999999999887899999998874 2 1 478999998
Q ss_pred ecchhhhcchhhHHHHHHHHhcccccCeEEEccCC
Q 014247 185 EWMGYMLLYESMLGSVITARDRWLKRGGLILPSYA 219 (428)
Q Consensus 185 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 219 (428)
.. .. .....+++.+.++|+|||++++...
T Consensus 133 ~~---~~---~~~~~~l~~~~~~L~pgG~lv~~~~ 161 (233)
T 2gpy_A 133 DA---AK---GQYRRFFDMYSPMVRPGGLILSDNV 161 (233)
T ss_dssp EG---GG---SCHHHHHHHHGGGEEEEEEEEEETT
T ss_pred CC---CH---HHHHHHHHHHHHHcCCCeEEEEEcC
Confidence 65 22 2578899999999999999997643
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.41 E-value=4.5e-12 Score=116.22 Aligned_cols=111 Identities=18% Similarity=0.217 Sum_probs=80.8
Q ss_pred HHHHHHHhcc---CCCCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccc
Q 014247 99 TYRAAIMQNQ---SFIEGKVVVDVGCGTGILSIFCAQA-G-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVED 172 (428)
Q Consensus 99 ~~~~~i~~~~---~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 172 (428)
.....+...+ ...+|.+|||+|||+|.++..+|+. + ..+|+|+|++ .|++.+.+.++.. .++.++.+|+..
T Consensus 60 kla~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r---~nv~~i~~Da~~ 136 (232)
T 3id6_C 60 KLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR---PNIFPLLADARF 136 (232)
T ss_dssp HHHHHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC---TTEEEEECCTTC
T ss_pred HHHHHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCeEEEEccccc
Confidence 3445555544 3678999999999999999999986 3 4599999999 8876655555443 359999999876
Q ss_pred cc----CCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 173 VE----IDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 173 l~----~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
.. ..++||+|+++.. . ......++..+.++|||||++++.
T Consensus 137 ~~~~~~~~~~~D~I~~d~a---~--~~~~~il~~~~~~~LkpGG~lvis 180 (232)
T 3id6_C 137 PQSYKSVVENVDVLYVDIA---Q--PDQTDIAIYNAKFFLKVNGDMLLV 180 (232)
T ss_dssp GGGTTTTCCCEEEEEECCC---C--TTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred chhhhccccceEEEEecCC---C--hhHHHHHHHHHHHhCCCCeEEEEE
Confidence 43 2378999999741 1 222334455666699999999875
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.41 E-value=6.7e-13 Score=120.06 Aligned_cols=102 Identities=24% Similarity=0.315 Sum_probs=85.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccc-cC-CCceeEEEEe
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQA-G-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDV-EI-DEEVDVIISE 185 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l-~~-~~~~DlVvs~ 185 (428)
.++.+|||||||+|..+..+++. + ..+|+++|++ .+++.|++++...++.++++++++|+.+. +. ++ ||+|++.
T Consensus 55 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~ 133 (210)
T 3c3p_A 55 KQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFMD 133 (210)
T ss_dssp HCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEE
T ss_pred hCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEEc
Confidence 45689999999999999999987 2 3599999999 99999999999888877899999998764 32 36 9999986
Q ss_pred cchhhhcchhhHHHHHHHHhcccccCeEEEccCC
Q 014247 186 WMGYMLLYESMLGSVITARDRWLKRGGLILPSYA 219 (428)
Q Consensus 186 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 219 (428)
. .......+++.+.++|+|||++++...
T Consensus 134 ~------~~~~~~~~l~~~~~~LkpgG~lv~~~~ 161 (210)
T 3c3p_A 134 C------DVFNGADVLERMNRCLAKNALLIAVNA 161 (210)
T ss_dssp T------TTSCHHHHHHHHGGGEEEEEEEEEESS
T ss_pred C------ChhhhHHHHHHHHHhcCCCeEEEEECc
Confidence 3 124577889999999999999997654
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.40 E-value=1.1e-12 Score=126.43 Aligned_cols=111 Identities=22% Similarity=0.161 Sum_probs=89.5
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCC--CeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC
Q 014247 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGA--KRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI 175 (428)
Q Consensus 99 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~--~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~ 175 (428)
...+.+.+.+...++.+|||||||+|.++..+++.+. .+|+|+|++ .+++.|++++..+++.+ ++++.+|+.+...
T Consensus 62 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~-v~~~~~d~~~~~~ 140 (317)
T 1dl5_A 62 SLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIEN-VIFVCGDGYYGVP 140 (317)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEESCGGGCCG
T ss_pred HHHHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCC-eEEEECChhhccc
Confidence 3445566666678899999999999999999998743 369999999 99999999999988876 9999999988543
Q ss_pred -CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCC
Q 014247 176 -DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYA 219 (428)
Q Consensus 176 -~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 219 (428)
.++||+|++.. .+.+.. +.+.++|||||++++...
T Consensus 141 ~~~~fD~Iv~~~---~~~~~~------~~~~~~LkpgG~lvi~~~ 176 (317)
T 1dl5_A 141 EFSPYDVIFVTV---GVDEVP------ETWFTQLKEGGRVIVPIN 176 (317)
T ss_dssp GGCCEEEEEECS---BBSCCC------HHHHHHEEEEEEEEEEBC
T ss_pred cCCCeEEEEEcC---CHHHHH------HHHHHhcCCCcEEEEEEC
Confidence 47899999976 333332 466789999999987644
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=3e-13 Score=123.95 Aligned_cols=156 Identities=12% Similarity=0.059 Sum_probs=95.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-H-HHHHH---HHHHHHCCCCCcEEEEEcccccccCC--CceeEE
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-D-IAVQA---NEVVKANNLTDKVIVLHGRVEDVEID--EEVDVI 182 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~-~~~~a---~~~~~~~~~~~~v~~~~~d~~~l~~~--~~~DlV 182 (428)
.++.+|||||||+|.++..+++. ...+|+|+|+| + |++.| ++++...++. ++.++++|+++++.. ..+|.|
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~-~v~~~~~d~~~l~~~~~d~v~~i 101 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLS-NVVFVIAAAESLPFELKNIADSI 101 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCS-SEEEECCBTTBCCGGGTTCEEEE
T ss_pred CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCC-CeEEEEcCHHHhhhhccCeEEEE
Confidence 57789999999999999999964 33489999999 5 44444 7777777775 499999999988531 445555
Q ss_pred EEecchhh-hc-chhhHHHHHHHHhcccccCeEEEccCC-eeeEeecCCccchhhhhhhhhccCCCCcchhHHHHHhcCC
Q 014247 183 ISEWMGYM-LL-YESMLGSVITARDRWLKRGGLILPSYA-TLYMAPVTHPDRYSESIDFWRNVYGIDMSAMMPLAKQCAF 259 (428)
Q Consensus 183 vs~~~~~~-l~-~~~~~~~~l~~~~~~LkpgG~lv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf 259 (428)
++...... .. ...+...+++++.++|||||.+++... ......... ... ........+ +...++..++.++||
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~--~~~-~~~~~~~~~-~~~~el~~~l~~aGf 177 (225)
T 3p2e_A 102 SILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDSYEEAEI--KKR-GLPLLSKAY-FLSEQYKAELSNSGF 177 (225)
T ss_dssp EEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEECCCC-----------------CCHHH-HHSHHHHHHHHHHTC
T ss_pred EEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEEeccccchhchh--hhc-CCCCCChhh-cchHHHHHHHHHcCC
Confidence 54321101 00 111235789999999999999987211 000000000 000 000000000 111248888999999
Q ss_pred CCceEEeecCCc
Q 014247 260 EEPSVETITGEN 271 (428)
Q Consensus 260 ~~~~~~~~~~~~ 271 (428)
+...++.++...
T Consensus 178 ~v~~~~~~~~~~ 189 (225)
T 3p2e_A 178 RIDDVKELDNEY 189 (225)
T ss_dssp EEEEEEEECHHH
T ss_pred CeeeeeecCHHH
Confidence 988888776543
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=7.8e-13 Score=122.98 Aligned_cols=103 Identities=19% Similarity=0.173 Sum_probs=86.5
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccc-c-C------CCce
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQA-G-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDV-E-I------DEEV 179 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l-~-~------~~~~ 179 (428)
.++++|||||||+|..+..+++. + ..+|+++|++ .+++.|++++...++.++++++.+|+.+. + + .++|
T Consensus 78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 157 (247)
T 1sui_A 78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY 157 (247)
T ss_dssp TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCB
T ss_pred hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCE
Confidence 46789999999999999999987 2 3599999999 99999999999999888899999998764 2 1 4789
Q ss_pred eEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCC
Q 014247 180 DVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYA 219 (428)
Q Consensus 180 DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 219 (428)
|+|++.. . ......+++.+.++|+|||++++...
T Consensus 158 D~V~~d~---~---~~~~~~~l~~~~~~LkpGG~lv~d~~ 191 (247)
T 1sui_A 158 DFIFVDA---D---KDNYLNYHKRLIDLVKVGGVIGYDNT 191 (247)
T ss_dssp SEEEECS---C---STTHHHHHHHHHHHBCTTCCEEEECT
T ss_pred EEEEEcC---c---hHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 9999854 1 23467889999999999999987643
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.40 E-value=1.3e-12 Score=119.73 Aligned_cols=107 Identities=16% Similarity=0.228 Sum_probs=85.5
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccc-ccCC
Q 014247 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVED-VEID 176 (428)
Q Consensus 99 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~-l~~~ 176 (428)
...+.+.+.+...++.+|||||||+|.++..+++.+ .+|+|+|++ .+++.|++++...+ +++++.+|+.+ ++..
T Consensus 57 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~---~v~~~~~d~~~~~~~~ 132 (231)
T 1vbf_A 57 NLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYYN---NIKLILGDGTLGYEEE 132 (231)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTCS---SEEEEESCGGGCCGGG
T ss_pred HHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHHc-CEEEEEeCCHHHHHHHHHHHhhcC---CeEEEECCcccccccC
Confidence 444555666666788999999999999999999987 599999999 99999999887665 69999999987 3334
Q ss_pred CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccC
Q 014247 177 EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 177 ~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
++||+|++.. .+.+.. ..+.++|+|||++++..
T Consensus 133 ~~fD~v~~~~---~~~~~~------~~~~~~L~pgG~l~~~~ 165 (231)
T 1vbf_A 133 KPYDRVVVWA---TAPTLL------CKPYEQLKEGGIMILPI 165 (231)
T ss_dssp CCEEEEEESS---BBSSCC------HHHHHTEEEEEEEEEEE
T ss_pred CCccEEEECC---cHHHHH------HHHHHHcCCCcEEEEEE
Confidence 7899999865 333322 35778999999998754
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.39 E-value=4.3e-13 Score=124.76 Aligned_cols=115 Identities=15% Similarity=0.080 Sum_probs=86.0
Q ss_pred HHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc---CCCeEEEEeCh-HHHHHHHHHHHHC---CCCCc------------
Q 014247 102 AAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA---GAKRVYAVDAS-DIAVQANEVVKAN---NLTDK------------ 162 (428)
Q Consensus 102 ~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~---g~~~V~giD~s-~~~~~a~~~~~~~---~~~~~------------ 162 (428)
+.+...+...++.+|||+|||+|.++..+++. +..+|+|+|+| .+++.|++++..+ ++.++
T Consensus 41 ~~~l~~~~~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (250)
T 1o9g_A 41 QRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFG 120 (250)
T ss_dssp HHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhcccCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcc
Confidence 33344433346789999999999999999886 23489999999 9999999887765 44332
Q ss_pred -------------EE-------------EEEccccccc------CCCceeEEEEecchhhhcc------hhhHHHHHHHH
Q 014247 163 -------------VI-------------VLHGRVEDVE------IDEEVDVIISEWMGYMLLY------ESMLGSVITAR 204 (428)
Q Consensus 163 -------------v~-------------~~~~d~~~l~------~~~~~DlVvs~~~~~~l~~------~~~~~~~l~~~ 204 (428)
++ ++++|+.+.. ...+||+|++++....... ......+++++
T Consensus 121 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~ 200 (250)
T 1o9g_A 121 KPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSL 200 (250)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHH
T ss_pred cccchhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHH
Confidence 66 9999988754 2348999999863222221 24577899999
Q ss_pred hcccccCeEEEc
Q 014247 205 DRWLKRGGLILP 216 (428)
Q Consensus 205 ~~~LkpgG~lv~ 216 (428)
.++|+|||++++
T Consensus 201 ~~~LkpgG~l~~ 212 (250)
T 1o9g_A 201 ASALPAHAVIAV 212 (250)
T ss_dssp HHHSCTTCEEEE
T ss_pred HHhcCCCcEEEE
Confidence 999999999986
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=2.1e-12 Score=118.78 Aligned_cols=103 Identities=20% Similarity=0.246 Sum_probs=82.4
Q ss_pred ccCCCCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccc---cC-CCce
Q 014247 107 NQSFIEGKVVVDVGCGTGILSIFCAQA-G-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDV---EI-DEEV 179 (428)
Q Consensus 107 ~~~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l---~~-~~~~ 179 (428)
.+...++.+|||+|||+|.++..+++. | ..+|+|+|++ .+++.+.++++.+ .+++++++|+.+. +. .++|
T Consensus 72 ~~~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~---~~v~~~~~d~~~~~~~~~~~~~~ 148 (233)
T 2ipx_A 72 QIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR---TNIIPVIEDARHPHKYRMLIAMV 148 (233)
T ss_dssp CCCCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC---TTEEEECSCTTCGGGGGGGCCCE
T ss_pred eecCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc---CCeEEEEcccCChhhhcccCCcE
Confidence 344567899999999999999999987 3 4699999999 8888888887775 4699999999873 22 4789
Q ss_pred eEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 180 DVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 180 DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
|+|+++.. .......++.++.++|||||.+++.
T Consensus 149 D~V~~~~~-----~~~~~~~~~~~~~~~LkpgG~l~i~ 181 (233)
T 2ipx_A 149 DVIFADVA-----QPDQTRIVALNAHTFLRNGGHFVIS 181 (233)
T ss_dssp EEEEECCC-----CTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEEcCC-----CccHHHHHHHHHHHHcCCCeEEEEE
Confidence 99999652 2233456688899999999999874
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.38 E-value=4.2e-13 Score=117.45 Aligned_cols=119 Identities=13% Similarity=0.054 Sum_probs=85.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEEecchh
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWMGY 189 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~~~~~ 189 (428)
.++.+|||+|||+|.++..+++.+ +|+|+|+| .+++. .++++++++|+.+...+++||+|+++...+
T Consensus 22 ~~~~~vLD~GcG~G~~~~~l~~~~--~v~gvD~s~~~~~~----------~~~~~~~~~d~~~~~~~~~fD~i~~n~~~~ 89 (170)
T 3q87_B 22 LEMKIVLDLGTSTGVITEQLRKRN--TVVSTDLNIRALES----------HRGGNLVRADLLCSINQESVDVVVFNPPYV 89 (170)
T ss_dssp CCSCEEEEETCTTCHHHHHHTTTS--EEEEEESCHHHHHT----------CSSSCEEECSTTTTBCGGGCSEEEECCCCB
T ss_pred CCCCeEEEeccCccHHHHHHHhcC--cEEEEECCHHHHhc----------ccCCeEEECChhhhcccCCCCEEEECCCCc
Confidence 567799999999999999999987 99999999 88765 245899999998743338999999976321
Q ss_pred hh------cchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhhccCCCCcchhHHHHHhcCCCCce
Q 014247 190 ML------LYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAMMPLAKQCAFEEPS 263 (428)
Q Consensus 190 ~l------~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~ 263 (428)
.. ....+...++.++.+.| |||.+++.... ......+.++++++||+...
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~-----------------------~~~~~~l~~~l~~~gf~~~~ 145 (170)
T 3q87_B 90 PDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIE-----------------------ANRPKEVLARLEERGYGTRI 145 (170)
T ss_dssp TTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEG-----------------------GGCHHHHHHHHHHTTCEEEE
T ss_pred cCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEec-----------------------CCCHHHHHHHHHHCCCcEEE
Confidence 11 01112345677777777 99999863210 01345677888899998655
Q ss_pred EE
Q 014247 264 VE 265 (428)
Q Consensus 264 ~~ 265 (428)
+.
T Consensus 146 ~~ 147 (170)
T 3q87_B 146 LK 147 (170)
T ss_dssp EE
T ss_pred EE
Confidence 44
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.5e-12 Score=127.53 Aligned_cols=121 Identities=21% Similarity=0.130 Sum_probs=97.6
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcC--CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccc
Q 014247 97 TETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAG--AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDV 173 (428)
Q Consensus 97 ~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g--~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l 173 (428)
.+.+...+.......++.+|||+|||+|.++..++..+ ..+|+|+|++ .+++.|+++++..++. +++++++|+.++
T Consensus 188 ~~~la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~-~i~~~~~D~~~~ 266 (354)
T 3tma_A 188 TPVLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLS-WIRFLRADARHL 266 (354)
T ss_dssp CHHHHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCT-TCEEEECCGGGG
T ss_pred CHHHHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCC-ceEEEeCChhhC
Confidence 35566777777777888999999999999999999964 3589999999 9999999999999987 799999999998
Q ss_pred cCC-CceeEEEEecchh-hhc----chhhHHHHHHHHhcccccCeEEEccC
Q 014247 174 EID-EEVDVIISEWMGY-MLL----YESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 174 ~~~-~~~DlVvs~~~~~-~l~----~~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
+.+ ..||+|++++... .+. .......+++.+.++|+|||.+++.+
T Consensus 267 ~~~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t 317 (354)
T 3tma_A 267 PRFFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLT 317 (354)
T ss_dssp GGTCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred ccccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 764 6789999986311 111 12234788999999999999998643
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.2e-12 Score=121.01 Aligned_cols=102 Identities=21% Similarity=0.288 Sum_probs=85.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcC--CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccc-c-C----------
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAG--AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDV-E-I---------- 175 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g--~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l-~-~---------- 175 (428)
.++.+|||||||+|..+..+++.. ..+|+++|++ .+++.|++++...++.++++++.+|+.+. + .
T Consensus 59 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 138 (239)
T 2hnk_A 59 SGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWA 138 (239)
T ss_dssp HTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGG
T ss_pred hCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhccccccc
Confidence 567899999999999999999873 4599999999 99999999999988887899999998663 2 1
Q ss_pred -----C-CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccC
Q 014247 176 -----D-EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 176 -----~-~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
. ++||+|++.. .......+++.+.++|+|||++++..
T Consensus 139 ~~f~~~~~~fD~I~~~~------~~~~~~~~l~~~~~~L~pgG~lv~~~ 181 (239)
T 2hnk_A 139 SDFAFGPSSIDLFFLDA------DKENYPNYYPLILKLLKPGGLLIADN 181 (239)
T ss_dssp TTTCCSTTCEEEEEECS------CGGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred ccccCCCCCcCEEEEeC------CHHHHHHHHHHHHHHcCCCeEEEEEc
Confidence 2 6899999853 23446788999999999999999754
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.38 E-value=6.4e-13 Score=129.23 Aligned_cols=109 Identities=22% Similarity=0.302 Sum_probs=83.9
Q ss_pred HHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CC-CeEEEEeCh-HHHHHHHHHHHHC-------C---CCCcEEEEEc
Q 014247 102 AAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-GA-KRVYAVDAS-DIAVQANEVVKAN-------N---LTDKVIVLHG 168 (428)
Q Consensus 102 ~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~-~~V~giD~s-~~~~~a~~~~~~~-------~---~~~~v~~~~~ 168 (428)
..+...+...++.+|||+|||+|.++..+++. |. .+|+|+|++ .+++.|++++... + +..+++++.+
T Consensus 95 ~~~l~~l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~ 174 (336)
T 2b25_A 95 NMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHK 174 (336)
T ss_dssp HHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEES
T ss_pred HHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEEC
Confidence 33444556688999999999999999999997 54 699999999 9999999988752 2 2357999999
Q ss_pred cccccc--CC-CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccC
Q 014247 169 RVEDVE--ID-EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 169 d~~~l~--~~-~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
|+.+.. ++ ++||+|+++.. .+..++..+.++|+|||.+++..
T Consensus 175 d~~~~~~~~~~~~fD~V~~~~~--------~~~~~l~~~~~~LkpgG~lv~~~ 219 (336)
T 2b25_A 175 DISGATEDIKSLTFDAVALDML--------NPHVTLPVFYPHLKHGGVCAVYV 219 (336)
T ss_dssp CTTCCC-------EEEEEECSS--------STTTTHHHHGGGEEEEEEEEEEE
T ss_pred ChHHcccccCCCCeeEEEECCC--------CHHHHHHHHHHhcCCCcEEEEEe
Confidence 998863 33 68999998541 12337888999999999998543
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.38 E-value=2.2e-12 Score=118.08 Aligned_cols=101 Identities=20% Similarity=0.362 Sum_probs=81.2
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc----CCCceeE
Q 014247 109 SFIEGKVVVDVGCGTGILSIFCAQA-G-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE----IDEEVDV 181 (428)
Q Consensus 109 ~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~----~~~~~Dl 181 (428)
...++.+|||+|||+|.++..+++. | ..+|+|+|++ .+++.++++++.+ .+++++++|+.+.. .+++||+
T Consensus 70 ~~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~---~~v~~~~~d~~~~~~~~~~~~~~D~ 146 (227)
T 1g8a_A 70 PIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER---RNIVPILGDATKPEEYRALVPKVDV 146 (227)
T ss_dssp CCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC---TTEEEEECCTTCGGGGTTTCCCEEE
T ss_pred CCCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc---CCCEEEEccCCCcchhhcccCCceE
Confidence 3567899999999999999999986 4 3699999999 8999888887654 46999999998732 3468999
Q ss_pred EEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 182 IISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 182 Vvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
|+++.. .......++.++.++|+|||.+++.
T Consensus 147 v~~~~~-----~~~~~~~~l~~~~~~LkpgG~l~~~ 177 (227)
T 1g8a_A 147 IFEDVA-----QPTQAKILIDNAEVYLKRGGYGMIA 177 (227)
T ss_dssp EEECCC-----STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEECCC-----CHhHHHHHHHHHHHhcCCCCEEEEE
Confidence 998652 2233445599999999999999864
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.38 E-value=1.3e-12 Score=123.44 Aligned_cols=113 Identities=14% Similarity=0.103 Sum_probs=90.4
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHHc--CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC-----CCce
Q 014247 108 QSFIEGKVVVDVGCGTGILSIFCAQA--GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI-----DEEV 179 (428)
Q Consensus 108 ~~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~-----~~~~ 179 (428)
+...++.+|||+|||+|..+..+++. +..+|+|+|++ .+++.++++++..++. +++++++|+.++.. .++|
T Consensus 79 l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~~~~f 157 (274)
T 3ajd_A 79 LNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVL-NTIIINADMRKYKDYLLKNEIFF 157 (274)
T ss_dssp HCCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCHHHHHHHHHHTTCCE
T ss_pred hCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCC-cEEEEeCChHhcchhhhhccccC
Confidence 34578899999999999999999984 44699999999 9999999999999886 59999999988754 5789
Q ss_pred eEEEEecchhhhc---------------chhhHHHHHHHHhcccccCeEEEccCCee
Q 014247 180 DVIISEWMGYMLL---------------YESMLGSVITARDRWLKRGGLILPSYATL 221 (428)
Q Consensus 180 DlVvs~~~~~~l~---------------~~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 221 (428)
|+|+++...+.+. .......+++.+.++|||||+++.+++++
T Consensus 158 D~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~ 214 (274)
T 3ajd_A 158 DKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSM 214 (274)
T ss_dssp EEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred CEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCC
Confidence 9999974221111 11335788999999999999999766543
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.7e-12 Score=119.86 Aligned_cols=103 Identities=13% Similarity=0.152 Sum_probs=86.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccc-c-C------CCce
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQA-G-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDV-E-I------DEEV 179 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l-~-~------~~~~ 179 (428)
.++++|||||||+|..+..+++. + ..+|+++|++ .+++.|+++++..++.++++++.+|+.+. + + .++|
T Consensus 69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 148 (237)
T 3c3y_A 69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSY 148 (237)
T ss_dssp TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCE
T ss_pred hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCc
Confidence 56789999999999999999986 2 4599999999 99999999999999988899999998764 1 1 4789
Q ss_pred eEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCC
Q 014247 180 DVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYA 219 (428)
Q Consensus 180 DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 219 (428)
|+|++.. .......+++.+.++|+|||++++...
T Consensus 149 D~I~~d~------~~~~~~~~l~~~~~~L~pGG~lv~d~~ 182 (237)
T 3c3y_A 149 DFGFVDA------DKPNYIKYHERLMKLVKVGGIVAYDNT 182 (237)
T ss_dssp EEEEECS------CGGGHHHHHHHHHHHEEEEEEEEEECT
T ss_pred CEEEECC------chHHHHHHHHHHHHhcCCCeEEEEecC
Confidence 9999854 233467889999999999999997654
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.5e-12 Score=122.90 Aligned_cols=100 Identities=28% Similarity=0.331 Sum_probs=85.5
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEEecc
Q 014247 110 FIEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWM 187 (428)
Q Consensus 110 ~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~~~ 187 (428)
..++.+|||+|||+|.++..+|+. +..+|+|+|++ .+++.|+++++.+++.+ +.++++|+.+++..++||+|+++..
T Consensus 117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~-~~~~~~d~~~~~~~~~~D~Vi~d~p 195 (272)
T 3a27_A 117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNN-VIPILADNRDVELKDVADRVIMGYV 195 (272)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSS-EEEEESCGGGCCCTTCEEEEEECCC
T ss_pred cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-EEEEECChHHcCccCCceEEEECCc
Confidence 467899999999999999999997 45699999999 99999999999999875 8899999998833478999998763
Q ss_pred hhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 188 GYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 188 ~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
. ....++..+.+.|+|||+++++
T Consensus 196 ~-------~~~~~l~~~~~~LkpgG~l~~s 218 (272)
T 3a27_A 196 H-------KTHKFLDKTFEFLKDRGVIHYH 218 (272)
T ss_dssp S-------SGGGGHHHHHHHEEEEEEEEEE
T ss_pred c-------cHHHHHHHHHHHcCCCCEEEEE
Confidence 2 3556788888999999999864
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.5e-12 Score=119.71 Aligned_cols=107 Identities=23% Similarity=0.305 Sum_probs=89.3
Q ss_pred HHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHHC-CCCCcEEEEEcccccccCC-
Q 014247 102 AAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-G-AKRVYAVDAS-DIAVQANEVVKAN-NLTDKVIVLHGRVEDVEID- 176 (428)
Q Consensus 102 ~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~giD~s-~~~~~a~~~~~~~-~~~~~v~~~~~d~~~l~~~- 176 (428)
..+...+...++.+|||+|||+|.++..+++. + ..+|+++|++ .+++.|++++..+ + .++++++++|+.+.+++
T Consensus 86 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g-~~~v~~~~~d~~~~~~~~ 164 (258)
T 2pwy_A 86 SAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQ-VENVRFHLGKLEEAELEE 164 (258)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-CCCEEEEESCGGGCCCCT
T ss_pred HHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC-CCCEEEEECchhhcCCCC
Confidence 45555666788999999999999999999997 4 4599999999 9999999998887 6 45699999999987554
Q ss_pred CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 177 EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 177 ~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
++||+|+++. .++..+++.+.++|+|||.+++.
T Consensus 165 ~~~D~v~~~~--------~~~~~~l~~~~~~L~~gG~l~~~ 197 (258)
T 2pwy_A 165 AAYDGVALDL--------MEPWKVLEKAALALKPDRFLVAY 197 (258)
T ss_dssp TCEEEEEEES--------SCGGGGHHHHHHHEEEEEEEEEE
T ss_pred CCcCEEEECC--------cCHHHHHHHHHHhCCCCCEEEEE
Confidence 7899999853 23457788999999999999864
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.9e-12 Score=116.07 Aligned_cols=109 Identities=19% Similarity=0.159 Sum_probs=86.0
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcC-C-CeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC-
Q 014247 100 YRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAG-A-KRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI- 175 (428)
Q Consensus 100 ~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g-~-~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~- 175 (428)
....+.+.+...++.+|||||||+|.++..+++.+ . .+|+++|++ .+++.|++++...++.+ ++++.+|+.....
T Consensus 65 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~ 143 (215)
T 2yxe_A 65 MVGMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDN-VIVIVGDGTLGYEP 143 (215)
T ss_dssp HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTT-EEEEESCGGGCCGG
T ss_pred HHHHHHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-eEEEECCcccCCCC
Confidence 34455556666788999999999999999999874 2 599999999 99999999988877765 9999999865332
Q ss_pred CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccC
Q 014247 176 DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 176 ~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
.++||+|++.. .+.+.. +.+.++|+|||++++..
T Consensus 144 ~~~fD~v~~~~---~~~~~~------~~~~~~L~pgG~lv~~~ 177 (215)
T 2yxe_A 144 LAPYDRIYTTA---AGPKIP------EPLIRQLKDGGKLLMPV 177 (215)
T ss_dssp GCCEEEEEESS---BBSSCC------HHHHHTEEEEEEEEEEE
T ss_pred CCCeeEEEECC---chHHHH------HHHHHHcCCCcEEEEEE
Confidence 47899999865 333322 46788999999998653
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.37 E-value=1.9e-12 Score=122.28 Aligned_cols=109 Identities=21% Similarity=0.267 Sum_probs=90.8
Q ss_pred HHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCc
Q 014247 102 AAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-G-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEE 178 (428)
Q Consensus 102 ~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~ 178 (428)
..+...+...++.+|||+|||+|.++..+++. + ..+|+++|++ .+++.|++++..+++.++++++.+|+.+....++
T Consensus 102 ~~i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 181 (277)
T 1o54_A 102 SFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEKD 181 (277)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCCS
T ss_pred HHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccCCc
Confidence 34555666788999999999999999999987 4 4699999999 9999999999998886779999999988733478
Q ss_pred eeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccC
Q 014247 179 VDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 179 ~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
||+|+++. .++..++..+.++|+|||.+++..
T Consensus 182 ~D~V~~~~--------~~~~~~l~~~~~~L~pgG~l~~~~ 213 (277)
T 1o54_A 182 VDALFLDV--------PDPWNYIDKCWEALKGGGRFATVC 213 (277)
T ss_dssp EEEEEECC--------SCGGGTHHHHHHHEEEEEEEEEEE
T ss_pred cCEEEECC--------cCHHHHHHHHHHHcCCCCEEEEEe
Confidence 99999853 234577888999999999998643
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.9e-12 Score=118.61 Aligned_cols=107 Identities=18% Similarity=0.172 Sum_probs=89.9
Q ss_pred HHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc-CCCcee
Q 014247 103 AIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE-IDEEVD 180 (428)
Q Consensus 103 ~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~-~~~~~D 180 (428)
.+...+...++.+|||+|||+|.++..+++. ..+|+++|++ .+++.|+++...+++..+++++.+|+.+.. ..++||
T Consensus 82 ~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D 160 (248)
T 2yvl_A 82 YIALKLNLNKEKRVLEFGTGSGALLAVLSEV-AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGIFH 160 (248)
T ss_dssp HHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTCBS
T ss_pred HHHHhcCCCCCCEEEEeCCCccHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCccc
Confidence 4555566678899999999999999999998 5599999999 999999999998888777999999998865 447899
Q ss_pred EEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccC
Q 014247 181 VIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 181 lVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
+|+++. .++..+++.+.++|+|||.+++..
T Consensus 161 ~v~~~~--------~~~~~~l~~~~~~L~~gG~l~~~~ 190 (248)
T 2yvl_A 161 AAFVDV--------REPWHYLEKVHKSLMEGAPVGFLL 190 (248)
T ss_dssp EEEECS--------SCGGGGHHHHHHHBCTTCEEEEEE
T ss_pred EEEECC--------cCHHHHHHHHHHHcCCCCEEEEEe
Confidence 999853 134567888899999999998643
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.2e-12 Score=128.28 Aligned_cols=108 Identities=22% Similarity=0.228 Sum_probs=90.2
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCC-CCcEEEEEcccccccC-----CCceeEEE
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNL-TDKVIVLHGRVEDVEI-----DEEVDVII 183 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~-~~~v~~~~~d~~~l~~-----~~~~DlVv 183 (428)
.++.+|||+|||+|.+++.+++.|+++|+|+|++ .+++.|++++..+++ .++++++++|+.++.. ..+||+|+
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii 298 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEE
Confidence 5788999999999999999999888899999999 999999999999998 6579999999987532 36899999
Q ss_pred Eecchh------hhcchhhHHHHHHHHhcccccCeEEEccC
Q 014247 184 SEWMGY------MLLYESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 184 s~~~~~------~l~~~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
+++..+ ..........++..+.++|+|||+++++.
T Consensus 299 ~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 339 (396)
T 3c0k_A 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFS 339 (396)
T ss_dssp ECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 986321 11222457788999999999999998754
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=2.2e-12 Score=123.67 Aligned_cols=135 Identities=16% Similarity=0.122 Sum_probs=95.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHH---CCCCCcEEEEEccccccc---CCCceeEE
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKA---NNLTDKVIVLHGRVEDVE---IDEEVDVI 182 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~---~~~~~~v~~~~~d~~~l~---~~~~~DlV 182 (428)
.++.+|||||||+|.++..+++. +..+|+++|++ .+++.|++++.. .....+++++.+|+.++. .+++||+|
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI 173 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence 56789999999999999999987 45699999999 999999987632 222357999999998764 24789999
Q ss_pred EEecchhhhcchhhH--HHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhhccCCCCcchhHHHHHhcCCC
Q 014247 183 ISEWMGYMLLYESML--GSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAMMPLAKQCAFE 260 (428)
Q Consensus 183 vs~~~~~~l~~~~~~--~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~ 260 (428)
+++....... ...+ ..+++.+.++|+|||++++..... |.. ......+.+.++++||.
T Consensus 174 i~d~~~~~~~-~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~-----------------~~~--~~~~~~~~~~l~~~GF~ 233 (304)
T 3bwc_A 174 IIDTTDPAGP-ASKLFGEAFYKDVLRILKPDGICCNQGESI-----------------WLD--LELIEKMSRFIRETGFA 233 (304)
T ss_dssp EEECC----------CCHHHHHHHHHHEEEEEEEEEEECCT-----------------TTC--HHHHHHHHHHHHHHTCS
T ss_pred EECCCCcccc-chhhhHHHHHHHHHHhcCCCcEEEEecCCc-----------------ccc--hHHHHHHHHHHHhCCCC
Confidence 9976322111 1111 688999999999999998753211 000 01234567778888998
Q ss_pred CceEE
Q 014247 261 EPSVE 265 (428)
Q Consensus 261 ~~~~~ 265 (428)
.+...
T Consensus 234 ~v~~~ 238 (304)
T 3bwc_A 234 SVQYA 238 (304)
T ss_dssp EEEEE
T ss_pred cEEEE
Confidence 65543
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.36 E-value=1.7e-12 Score=122.61 Aligned_cols=107 Identities=18% Similarity=0.223 Sum_probs=85.2
Q ss_pred HHHhccCCCCCCEEEEEcCCCcHHHHHHHHc--CCCeEEEEeCh-HHHHHHHHHHHHC-CCCCcEEEEEcccccccCCCc
Q 014247 103 AIMQNQSFIEGKVVVDVGCGTGILSIFCAQA--GAKRVYAVDAS-DIAVQANEVVKAN-NLTDKVIVLHGRVEDVEIDEE 178 (428)
Q Consensus 103 ~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~giD~s-~~~~~a~~~~~~~-~~~~~v~~~~~d~~~l~~~~~ 178 (428)
.+...+...++.+|||+|||+|.++..+++. +..+|+++|++ .+++.|++++..+ +. ++++++++|+.+...+++
T Consensus 101 ~~~~~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~-~~v~~~~~d~~~~~~~~~ 179 (275)
T 1yb2_A 101 YIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDI-GNVRTSRSDIADFISDQM 179 (275)
T ss_dssp -----CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCC-TTEEEECSCTTTCCCSCC
T ss_pred HHHHHcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCC-CcEEEEECchhccCcCCC
Confidence 4555566678899999999999999999986 24599999999 9999999999887 75 459999999988433478
Q ss_pred eeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccC
Q 014247 179 VDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 179 ~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
||+|++.. .++..+++++.++|+|||++++..
T Consensus 180 fD~Vi~~~--------~~~~~~l~~~~~~LkpgG~l~i~~ 211 (275)
T 1yb2_A 180 YDAVIADI--------PDPWNHVQKIASMMKPGSVATFYL 211 (275)
T ss_dssp EEEEEECC--------SCGGGSHHHHHHTEEEEEEEEEEE
T ss_pred ccEEEEcC--------cCHHHHHHHHHHHcCCCCEEEEEe
Confidence 99999843 235678899999999999998754
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.35 E-value=1.7e-12 Score=129.18 Aligned_cols=109 Identities=25% Similarity=0.259 Sum_probs=90.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC-----CCceeEEEE
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI-----DEEVDVIIS 184 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~-----~~~~DlVvs 184 (428)
.++.+|||+|||+|.++..+++.|+++|+|+|++ .+++.|++++..+++.++++++++|+.++.. .++||+|++
T Consensus 216 ~~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~ 295 (396)
T 2as0_A 216 QPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL 295 (396)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred hCCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEE
Confidence 3788999999999999999999888899999999 9999999999999987679999999887532 468999999
Q ss_pred ecchh------hhcchhhHHHHHHHHhcccccCeEEEccCC
Q 014247 185 EWMGY------MLLYESMLGSVITARDRWLKRGGLILPSYA 219 (428)
Q Consensus 185 ~~~~~------~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 219 (428)
++..+ ..........++..+.++|+|||.+++.+.
T Consensus 296 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 336 (396)
T 2as0_A 296 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSC 336 (396)
T ss_dssp CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEEC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 76321 122224577889999999999999886543
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.9e-12 Score=126.30 Aligned_cols=115 Identities=23% Similarity=0.197 Sum_probs=91.0
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCC-CeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCC
Q 014247 100 YRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGA-KRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDE 177 (428)
Q Consensus 100 ~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~-~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~ 177 (428)
..+.+.+.+...++.+|||+|||+|.++..+++.+. .+|+++|+| .+++.|++++..+++. ++++.+|+.+.. ++
T Consensus 184 ~~~~ll~~l~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~--~~~~~~d~~~~~-~~ 260 (343)
T 2pjd_A 184 GSQLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVE--GEVFASNVFSEV-KG 260 (343)
T ss_dssp HHHHHHHHSCTTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCC--CEEEECSTTTTC-CS
T ss_pred HHHHHHHhcCcCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC--CEEEEccccccc-cC
Confidence 344555655445677999999999999999999864 389999999 9999999999988875 567888987654 57
Q ss_pred ceeEEEEecchhhh--cchhhHHHHHHHHhcccccCeEEEcc
Q 014247 178 EVDVIISEWMGYML--LYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 178 ~~DlVvs~~~~~~l--~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
+||+|+++...+.. ........+++++.++|+|||.+++.
T Consensus 261 ~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 302 (343)
T 2pjd_A 261 RFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIV 302 (343)
T ss_dssp CEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred CeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 99999998632211 12345789999999999999999864
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=3.9e-12 Score=134.96 Aligned_cols=108 Identities=20% Similarity=0.222 Sum_probs=91.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCC-CcEEEEEcccccc-c-CCCceeEEEEec
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLT-DKVIVLHGRVEDV-E-IDEEVDVIISEW 186 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~-~~v~~~~~d~~~l-~-~~~~~DlVvs~~ 186 (428)
.++++|||+|||+|.+++.+++.|+.+|+++|+| .+++.|+++++.|++. ++++++++|+.++ + ..++||+|++++
T Consensus 538 ~~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DP 617 (703)
T 3v97_A 538 SKGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDP 617 (703)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECC
T ss_pred cCCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECC
Confidence 4789999999999999999999989889999999 9999999999999997 5799999999874 2 237899999987
Q ss_pred chh--------hhcchhhHHHHHHHHhcccccCeEEEccC
Q 014247 187 MGY--------MLLYESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 187 ~~~--------~l~~~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
..+ .+....+...++..+.++|+|||+++++.
T Consensus 618 P~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~ 657 (703)
T 3v97_A 618 PTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSN 657 (703)
T ss_dssp CSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 422 22334567888999999999999999654
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.35 E-value=2.9e-12 Score=117.21 Aligned_cols=103 Identities=16% Similarity=0.141 Sum_probs=86.2
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc--C--C---Ccee
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQA-G-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE--I--D---EEVD 180 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~--~--~---~~~D 180 (428)
.++.+|||||||+|..+..+++. + ..+|+++|++ .+++.|++++..+++.++++++++|+.+.. + . ++||
T Consensus 68 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D 147 (229)
T 2avd_A 68 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFD 147 (229)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEE
T ss_pred cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCcc
Confidence 56789999999999999999986 2 4599999999 999999999999998888999999986541 1 1 6899
Q ss_pred EEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCC
Q 014247 181 VIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYA 219 (428)
Q Consensus 181 lVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 219 (428)
+|++... ......+++.+.++|+|||++++...
T Consensus 148 ~v~~d~~------~~~~~~~l~~~~~~L~pgG~lv~~~~ 180 (229)
T 2avd_A 148 VAVVDAD------KENCSAYYERCLQLLRPGGILAVLRV 180 (229)
T ss_dssp EEEECSC------STTHHHHHHHHHHHEEEEEEEEEECC
T ss_pred EEEECCC------HHHHHHHHHHHHHHcCCCeEEEEECC
Confidence 9998641 33467789999999999999997653
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.34 E-value=3.9e-12 Score=120.09 Aligned_cols=110 Identities=25% Similarity=0.337 Sum_probs=90.1
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHHC-C-CCCcEEEEEcccccccC
Q 014247 101 RAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-G-AKRVYAVDAS-DIAVQANEVVKAN-N-LTDKVIVLHGRVEDVEI 175 (428)
Q Consensus 101 ~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~giD~s-~~~~~a~~~~~~~-~-~~~~v~~~~~d~~~l~~ 175 (428)
...+...+...++.+|||+|||+|.++..+++. + ..+|+++|++ .+++.|++++..+ + +.++++++++|+.+.++
T Consensus 88 ~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~ 167 (280)
T 1i9g_A 88 AAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSEL 167 (280)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCC
T ss_pred HHHHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCC
Confidence 345555666788999999999999999999985 3 4599999999 9999999998876 4 45579999999998765
Q ss_pred C-CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccC
Q 014247 176 D-EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 176 ~-~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
+ ++||+|+++. .++..++..+.++|+|||.+++..
T Consensus 168 ~~~~~D~v~~~~--------~~~~~~l~~~~~~L~pgG~l~~~~ 203 (280)
T 1i9g_A 168 PDGSVDRAVLDM--------LAPWEVLDAVSRLLVAGGVLMVYV 203 (280)
T ss_dssp CTTCEEEEEEES--------SCGGGGHHHHHHHEEEEEEEEEEE
T ss_pred CCCceeEEEECC--------cCHHHHHHHHHHhCCCCCEEEEEe
Confidence 3 7899999853 134577889999999999998643
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.34 E-value=3.8e-12 Score=122.61 Aligned_cols=114 Identities=18% Similarity=0.197 Sum_probs=89.6
Q ss_pred hccCCCCCCEEEEEcCCCcHHHHHHHHc--CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC-CCceeE
Q 014247 106 QNQSFIEGKVVVDVGCGTGILSIFCAQA--GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI-DEEVDV 181 (428)
Q Consensus 106 ~~~~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~-~~~~Dl 181 (428)
..+...++.+|||+|||+|..+..+++. +..+|+|+|++ .+++.++++++.+++.+ ++++++|+.+++. +++||+
T Consensus 112 ~~l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~-v~~~~~D~~~~~~~~~~fD~ 190 (315)
T 1ixk_A 112 VALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLN-VILFHSSSLHIGELNVEFDK 190 (315)
T ss_dssp HHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCS-EEEESSCGGGGGGGCCCEEE
T ss_pred HHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCe-EEEEECChhhcccccccCCE
Confidence 3445678899999999999999999986 23589999999 99999999999988864 9999999988754 478999
Q ss_pred EEEecchhh---hcchh----------------hHHHHHHHHhcccccCeEEEccCCe
Q 014247 182 IISEWMGYM---LLYES----------------MLGSVITARDRWLKRGGLILPSYAT 220 (428)
Q Consensus 182 Vvs~~~~~~---l~~~~----------------~~~~~l~~~~~~LkpgG~lv~~~~~ 220 (428)
|+++...+. +.... ....+++.+.++|||||++++++++
T Consensus 191 Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs 248 (315)
T 1ixk_A 191 ILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCS 248 (315)
T ss_dssp EEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred EEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 999643111 11111 1258899999999999999976554
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.2e-12 Score=118.65 Aligned_cols=103 Identities=17% Similarity=0.210 Sum_probs=85.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccc----cC-C--Ccee
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQA-G-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDV----EI-D--EEVD 180 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l----~~-~--~~~D 180 (428)
.++.+|||||||+|..+..+++. + ..+|+++|++ .+++.|++++...++.++++++.+|+.+. +. . ++||
T Consensus 71 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD 150 (232)
T 3cbg_A 71 TGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFD 150 (232)
T ss_dssp HTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEE
T ss_pred cCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcC
Confidence 46789999999999999999986 2 3499999999 99999999999888887899999997652 22 1 6899
Q ss_pred EEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCC
Q 014247 181 VIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYA 219 (428)
Q Consensus 181 lVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 219 (428)
+|++... ......+++.+.++|+|||++++...
T Consensus 151 ~V~~d~~------~~~~~~~l~~~~~~LkpgG~lv~~~~ 183 (232)
T 3cbg_A 151 LIFIDAD------KRNYPRYYEIGLNLLRRGGLMVIDNV 183 (232)
T ss_dssp EEEECSC------GGGHHHHHHHHHHTEEEEEEEEEECT
T ss_pred EEEECCC------HHHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 9998641 24567889999999999999997654
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=4.2e-12 Score=117.13 Aligned_cols=107 Identities=11% Similarity=0.206 Sum_probs=79.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHH------CCCCCcEEEEEccccc-cc--C-CCc
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKA------NNLTDKVIVLHGRVED-VE--I-DEE 178 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~------~~~~~~v~~~~~d~~~-l~--~-~~~ 178 (428)
.++.+|||||||+|.++..+|+. +...|+|||++ .|++.|++++.. .++. ++.++++|+.+ ++ + +++
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~-nv~~~~~d~~~~l~~~~~~~~ 123 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQ-NIACLRSNAMKHLPNFFYKGQ 123 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCT-TEEEEECCTTTCHHHHCCTTC
T ss_pred CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCC-eEEEEECcHHHhhhhhCCCcC
Confidence 45679999999999999999987 34589999999 999999887654 3443 59999999987 54 3 478
Q ss_pred eeEEEEecchhhhc--chh---hHHHHHHHHhcccccCeEEEccC
Q 014247 179 VDVIISEWMGYMLL--YES---MLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 179 ~DlVvs~~~~~~l~--~~~---~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
||.|++........ +.. ....+++++.++|||||.+++.+
T Consensus 124 ~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~t 168 (235)
T 3ckk_A 124 LTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTIT 168 (235)
T ss_dssp EEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred eeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEe
Confidence 99998743110000 000 01478999999999999998753
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.4e-12 Score=123.28 Aligned_cols=107 Identities=22% Similarity=0.258 Sum_probs=76.7
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEE-EcccccccC-
Q 014247 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVL-HGRVEDVEI- 175 (428)
Q Consensus 99 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~-~~d~~~l~~- 175 (428)
.+.+++.......++.+|||||||||.++..+++.|+.+|+|+|++ .|++.+.+. + .++... ..++..+..
T Consensus 72 Kl~~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~---~---~rv~~~~~~ni~~l~~~ 145 (291)
T 3hp7_A 72 KLEKALAVFNLSVEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQ---D---DRVRSMEQYNFRYAEPV 145 (291)
T ss_dssp HHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHT---C---TTEEEECSCCGGGCCGG
T ss_pred HHHHHHHhcCCCccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHh---C---cccceecccCceecchh
Confidence 3445555443345788999999999999999999988899999999 998875432 1 234333 335544432
Q ss_pred --C-CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 176 --D-EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 176 --~-~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
+ ..||+|+++. .+. .+..++.++.++|+|||.+++.
T Consensus 146 ~l~~~~fD~v~~d~---sf~---sl~~vL~e~~rvLkpGG~lv~l 184 (291)
T 3hp7_A 146 DFTEGLPSFASIDV---SFI---SLNLILPALAKILVDGGQVVAL 184 (291)
T ss_dssp GCTTCCCSEEEECC---SSS---CGGGTHHHHHHHSCTTCEEEEE
T ss_pred hCCCCCCCEEEEEe---eHh---hHHHHHHHHHHHcCcCCEEEEE
Confidence 3 3499999865 222 2478899999999999998863
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=4.9e-12 Score=119.05 Aligned_cols=125 Identities=15% Similarity=0.153 Sum_probs=88.3
Q ss_pred ccChhhHHHHHHHHHhccCCCCCCEEEEEcCCCcH----HHHHHHHc-C----CCeEEEEeCh-HHHHHHHHHHHH----
Q 014247 91 IKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGI----LSIFCAQA-G----AKRVYAVDAS-DIAVQANEVVKA---- 156 (428)
Q Consensus 91 ~~d~~r~~~~~~~i~~~~~~~~~~~VLDiGcGtG~----ls~~la~~-g----~~~V~giD~s-~~~~~a~~~~~~---- 156 (428)
.+|+...+.+.+.+... .++.+|||+|||||. +++.+++. + ..+|+|+|+| .+++.|++.+..
T Consensus 87 fRd~~~f~~l~~~llp~---~~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~ 163 (274)
T 1af7_A 87 FREAHHFPILAEHARRR---HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSEL 163 (274)
T ss_dssp TTTTTHHHHHHHHHHHS---CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGG
T ss_pred cCChHHHHHHHHHccCC---CCCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhh
Confidence 44445555555554433 245799999999998 67777765 3 1289999999 999999875310
Q ss_pred -------------------CC-------CCCcEEEEEcccccccC--CCceeEEEEecchhhhcchhhHHHHHHHHhccc
Q 014247 157 -------------------NN-------LTDKVIVLHGRVEDVEI--DEEVDVIISEWMGYMLLYESMLGSVITARDRWL 208 (428)
Q Consensus 157 -------------------~~-------~~~~v~~~~~d~~~l~~--~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~L 208 (428)
.+ +..+|.|.++|+.+.++ .++||+|+|..+...+ .......+++.+.+.|
T Consensus 164 ~~~~~~~~~~~f~~~~~~~~~~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf-~~~~~~~vl~~~~~~L 242 (274)
T 1af7_A 164 KTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYF-DKTTQEDILRRFVPLL 242 (274)
T ss_dssp TTSCHHHHHHHEEECCTTSCSEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGS-CHHHHHHHHHHHGGGE
T ss_pred hcCCHHHHHHHhhccccCCCCceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhC-CHHHHHHHHHHHHHHh
Confidence 00 11369999999988544 3789999997632222 2334689999999999
Q ss_pred ccCeEEEccCC
Q 014247 209 KRGGLILPSYA 219 (428)
Q Consensus 209 kpgG~lv~~~~ 219 (428)
+|||.+++...
T Consensus 243 ~pgG~L~lg~s 253 (274)
T 1af7_A 243 KPDGLLFAGHS 253 (274)
T ss_dssp EEEEEEEECTT
T ss_pred CCCcEEEEEec
Confidence 99999997543
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=5.4e-12 Score=116.19 Aligned_cols=109 Identities=18% Similarity=0.224 Sum_probs=84.0
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccc-ccCCC
Q 014247 100 YRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVED-VEIDE 177 (428)
Q Consensus 100 ~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~-l~~~~ 177 (428)
....+.+.+...++.+|||||||+|.++..+++.+..+|+++|++ .+++.|++++...++.+ ++++.+|+.. ++...
T Consensus 79 ~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~ 157 (235)
T 1jg1_A 79 MVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKN-VHVILGDGSKGFPPKA 157 (235)
T ss_dssp HHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCS-EEEEESCGGGCCGGGC
T ss_pred HHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCC-cEEEECCcccCCCCCC
Confidence 344455555667889999999999999999999742689999999 99999999999888865 9999999732 22224
Q ss_pred ceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccC
Q 014247 178 EVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 178 ~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
+||+|++.. .+.+.. ..+.+.|+|||++++..
T Consensus 158 ~fD~Ii~~~---~~~~~~------~~~~~~L~pgG~lvi~~ 189 (235)
T 1jg1_A 158 PYDVIIVTA---GAPKIP------EPLIEQLKIGGKLIIPV 189 (235)
T ss_dssp CEEEEEECS---BBSSCC------HHHHHTEEEEEEEEEEE
T ss_pred CccEEEECC---cHHHHH------HHHHHhcCCCcEEEEEE
Confidence 699999865 332222 36778999999998754
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=5.9e-12 Score=114.99 Aligned_cols=100 Identities=24% Similarity=0.295 Sum_probs=80.2
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHc-CC-CeEEEEeCh-HHHHHHHHHHHHCCC----CCcEEEEEcccccccC-CCceeE
Q 014247 110 FIEGKVVVDVGCGTGILSIFCAQA-GA-KRVYAVDAS-DIAVQANEVVKANNL----TDKVIVLHGRVEDVEI-DEEVDV 181 (428)
Q Consensus 110 ~~~~~~VLDiGcGtG~ls~~la~~-g~-~~V~giD~s-~~~~~a~~~~~~~~~----~~~v~~~~~d~~~l~~-~~~~Dl 181 (428)
..++.+|||||||+|.++..+++. +. .+|+++|++ .+++.|++++..+++ .++++++.+|+..... .++||+
T Consensus 75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 154 (226)
T 1i1n_A 75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA 154 (226)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCE
Confidence 467899999999999999999987 43 499999999 999999999887654 3469999999886543 378999
Q ss_pred EEEecchhhhcchhhHHHHHHHHhcccccCeEEEccC
Q 014247 182 IISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 182 Vvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
|++... +. .+++.+.++|||||++++..
T Consensus 155 i~~~~~---~~------~~~~~~~~~LkpgG~lv~~~ 182 (226)
T 1i1n_A 155 IHVGAA---AP------VVPQALIDQLKPGGRLILPV 182 (226)
T ss_dssp EEECSB---BS------SCCHHHHHTEEEEEEEEEEE
T ss_pred EEECCc---hH------HHHHHHHHhcCCCcEEEEEE
Confidence 998652 21 22357789999999998753
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.31 E-value=2.5e-13 Score=127.44 Aligned_cols=110 Identities=18% Similarity=0.213 Sum_probs=75.5
Q ss_pred HHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeChHHHHHHHHHH-HHCCCCCcEEEE--EcccccccCCCce
Q 014247 103 AIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQANEVV-KANNLTDKVIVL--HGRVEDVEIDEEV 179 (428)
Q Consensus 103 ~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s~~~~~a~~~~-~~~~~~~~v~~~--~~d~~~l~~~~~~ 179 (428)
.+.+.....++.+|||||||+|.++..+++. .+|+|||+++|+..+++.. .......++.++ ++|+.+++ +++|
T Consensus 65 ~i~~~~~~~~g~~VLDlGcGtG~~s~~la~~--~~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~-~~~f 141 (265)
T 2oxt_A 65 WMEERGYVELTGRVVDLGCGRGGWSYYAASR--PHVMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIHTLP-VERT 141 (265)
T ss_dssp HHHHHTSCCCCEEEEEESCTTSHHHHHHHTS--TTEEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC-CCCC
T ss_pred HHHHcCCCCCCCEEEEeCcCCCHHHHHHHHc--CcEEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHhHCC-CCCC
Confidence 3333334467899999999999999999998 5899999997532221110 000111158999 99999876 5789
Q ss_pred eEEEEecchhhhcc-hhhHH---HHHHHHhcccccCe--EEEc
Q 014247 180 DVIISEWMGYMLLY-ESMLG---SVITARDRWLKRGG--LILP 216 (428)
Q Consensus 180 DlVvs~~~~~~l~~-~~~~~---~~l~~~~~~LkpgG--~lv~ 216 (428)
|+|+|+.. +.... ..+.. .++..+.++|+||| .+++
T Consensus 142 D~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~ 183 (265)
T 2oxt_A 142 DVIMCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVV 183 (265)
T ss_dssp SEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEE
T ss_pred cEEEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEE
Confidence 99999764 22211 11111 37888999999999 8886
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=5.8e-12 Score=124.21 Aligned_cols=151 Identities=15% Similarity=0.091 Sum_probs=103.5
Q ss_pred HHHHhccC-CCCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEeChHHHHHHHHHHHHCCCCCcEEEEEcccccccCCCce
Q 014247 102 AAIMQNQS-FIEGKVVVDVGCGTGILSIFCAQAG-AKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEV 179 (428)
Q Consensus 102 ~~i~~~~~-~~~~~~VLDiGcGtG~ls~~la~~g-~~~V~giD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~ 179 (428)
..+...+. ..++.+|||||||+|.++..+++.+ ..+++++|+..+++.|++ . .+++++.+|+.+ +.+. |
T Consensus 198 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~------~-~~v~~~~~d~~~-~~~~-~ 268 (372)
T 1fp1_D 198 KRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPP------L-SGIEHVGGDMFA-SVPQ-G 268 (372)
T ss_dssp HHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCC------C-TTEEEEECCTTT-CCCC-E
T ss_pred HHHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeChHHHHHhhhh------c-CCCEEEeCCccc-CCCC-C
Confidence 34444443 4567899999999999999999874 347889999767665543 1 359999999987 5555 9
Q ss_pred eEEEEecchhhhcchhhHH--HHHHHHhcccccCeEEEccCCeeeEeecCCccc----hhhhhhhh----hccCCCCcch
Q 014247 180 DVIISEWMGYMLLYESMLG--SVITARDRWLKRGGLILPSYATLYMAPVTHPDR----YSESIDFW----RNVYGIDMSA 249 (428)
Q Consensus 180 DlVvs~~~~~~l~~~~~~~--~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~----~~~~~~~~----~~~~~~~~~~ 249 (428)
|+|++.. ++++..+.. .+++++.++|+|||++++..... +-..... .......+ ......+..+
T Consensus 269 D~v~~~~---~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~---~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e 342 (372)
T 1fp1_D 269 DAMILKA---VCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFIL---PEEPNTSEESKLVSTLDNLMFITVGGRERTEKQ 342 (372)
T ss_dssp EEEEEES---SGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEE---CSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHH
T ss_pred CEEEEec---ccccCCHHHHHHHHHHHHHhcCCCCEEEEEEecc---CCCCccchHHHHHHHhhHHHHhccCCccCCHHH
Confidence 9999866 566555555 99999999999999998765322 1111100 11111111 1122345778
Q ss_pred hHHHHHhcCCCCceEEee
Q 014247 250 MMPLAKQCAFEEPSVETI 267 (428)
Q Consensus 250 l~~~l~~~Gf~~~~~~~~ 267 (428)
+..+++++||+...+...
T Consensus 343 ~~~ll~~aGf~~~~~~~~ 360 (372)
T 1fp1_D 343 YEKLSKLSGFSKFQVACR 360 (372)
T ss_dssp HHHHHHHTTCSEEEEEEE
T ss_pred HHHHHHHCCCceEEEEEc
Confidence 999999999998776653
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.31 E-value=1.3e-11 Score=110.95 Aligned_cols=100 Identities=26% Similarity=0.201 Sum_probs=80.5
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEEecc
Q 014247 109 SFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWM 187 (428)
Q Consensus 109 ~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~~~ 187 (428)
...++.+|||+|||+|.++..+++.|..+|+|+|++ .+++.|++++..+++ +++++++|+.+++ .+||+|++++.
T Consensus 46 ~~~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~--~~~D~v~~~~p 121 (207)
T 1wy7_A 46 GDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG--KFKVFIGDVSEFN--SRVDIVIMNPP 121 (207)
T ss_dssp TSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT--SEEEEESCGGGCC--CCCSEEEECCC
T ss_pred CCCCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCC--CEEEEECchHHcC--CCCCEEEEcCC
Confidence 345788999999999999999999887789999999 999999999888877 5999999999875 68999999874
Q ss_pred hhhhcchhhHHHHHHHHhcccccCeEEE
Q 014247 188 GYMLLYESMLGSVITARDRWLKRGGLIL 215 (428)
Q Consensus 188 ~~~l~~~~~~~~~l~~~~~~LkpgG~lv 215 (428)
.+... ......+++.+.++| |+.++
T Consensus 122 ~~~~~-~~~~~~~l~~~~~~l--~~~~~ 146 (207)
T 1wy7_A 122 FGSQR-KHADRPFLLKAFEIS--DVVYS 146 (207)
T ss_dssp CSSSS-TTTTHHHHHHHHHHC--SEEEE
T ss_pred Ccccc-CCchHHHHHHHHHhc--CcEEE
Confidence 22222 233456778888877 66544
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.2e-11 Score=121.77 Aligned_cols=154 Identities=18% Similarity=0.153 Sum_probs=101.8
Q ss_pred HHHhccC-CCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeChHHHHHHHHHHHHCCCCCcEEEEEcccccccCCCcee
Q 014247 103 AIMQNQS-FIEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVD 180 (428)
Q Consensus 103 ~i~~~~~-~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~D 180 (428)
.+...+. ..+..+|||||||+|.++..+++. ...+++++|+..+++.|++. .+++++.+|+.+ +.+.. |
T Consensus 193 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~d~~~-~~p~~-D 263 (368)
T 3reo_A 193 KILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPAF-------SGVEHLGGDMFD-GVPKG-D 263 (368)
T ss_dssp HHHTTCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCC-------TTEEEEECCTTT-CCCCC-S
T ss_pred HHHHhcccccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEehHHHHHhhhhc-------CCCEEEecCCCC-CCCCC-C
Confidence 3444443 456789999999999999999986 33489999997666555431 469999999987 55544 9
Q ss_pred EEEEecchhhhcchh--hHHHHHHHHhcccccCeEEEccCCeeeEeecCCcc-chhhhhhh--h---hccCCCCcchhHH
Q 014247 181 VIISEWMGYMLLYES--MLGSVITARDRWLKRGGLILPSYATLYMAPVTHPD-RYSESIDF--W---RNVYGIDMSAMMP 252 (428)
Q Consensus 181 lVvs~~~~~~l~~~~--~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~-~~~~~~~~--~---~~~~~~~~~~l~~ 252 (428)
+|++.. ++++.. +...+|+++++.|+|||++++........+..... ........ . .........++..
T Consensus 264 ~v~~~~---vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~rt~~e~~~ 340 (368)
T 3reo_A 264 AIFIKW---ICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQA 340 (368)
T ss_dssp EEEEES---CGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSBCCCCCHHHHHH
T ss_pred EEEEec---hhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCCCccCCHHHHHH
Confidence 999876 454333 35688999999999999998765432110000000 00000111 1 1222345778999
Q ss_pred HHHhcCCCCceEEeec
Q 014247 253 LAKQCAFEEPSVETIT 268 (428)
Q Consensus 253 ~l~~~Gf~~~~~~~~~ 268 (428)
+++++||+.+.+....
T Consensus 341 ll~~AGF~~v~~~~~~ 356 (368)
T 3reo_A 341 LAMASGFRGFKVASCA 356 (368)
T ss_dssp HHHHTTCCEEEEEEEE
T ss_pred HHHHCCCeeeEEEEeC
Confidence 9999999988766553
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.8e-12 Score=116.19 Aligned_cols=109 Identities=23% Similarity=0.243 Sum_probs=85.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC-CceeEEEEecch
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID-EEVDVIISEWMG 188 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~-~~~DlVvs~~~~ 188 (428)
.++.+|||||||+|.++..++ .+|+|+|++ . ++.++++|+.+++++ ++||+|++..
T Consensus 66 ~~~~~vLDiG~G~G~~~~~l~----~~v~~~D~s~~----------------~~~~~~~d~~~~~~~~~~fD~v~~~~-- 123 (215)
T 2zfu_A 66 PASLVVADFGCGDCRLASSIR----NPVHCFDLASL----------------DPRVTVCDMAQVPLEDESVDVAVFCL-- 123 (215)
T ss_dssp CTTSCEEEETCTTCHHHHHCC----SCEEEEESSCS----------------STTEEESCTTSCSCCTTCEEEEEEES--
T ss_pred CCCCeEEEECCcCCHHHHHhh----ccEEEEeCCCC----------------CceEEEeccccCCCCCCCEeEEEEeh--
Confidence 567899999999999988773 489999999 5 367889999987764 7899999865
Q ss_pred hhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhhccCCCCcchhHHHHHhcCCCCceE
Q 014247 189 YMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAMMPLAKQCAFEEPSV 264 (428)
Q Consensus 189 ~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~ 264 (428)
.+++ .++..+++++.++|+|||.+++..... ...+...+..+++++||+....
T Consensus 124 -~l~~-~~~~~~l~~~~~~L~~gG~l~i~~~~~---------------------~~~~~~~~~~~l~~~Gf~~~~~ 176 (215)
T 2zfu_A 124 -SLMG-TNIRDFLEEANRVLKPGGLLKVAEVSS---------------------RFEDVRTFLRAVTKLGFKIVSK 176 (215)
T ss_dssp -CCCS-SCHHHHHHHHHHHEEEEEEEEEEECGG---------------------GCSCHHHHHHHHHHTTEEEEEE
T ss_pred -hccc-cCHHHHHHHHHHhCCCCeEEEEEEcCC---------------------CCCCHHHHHHHHHHCCCEEEEE
Confidence 4443 678999999999999999998753210 0125678889999999986553
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=1.4e-11 Score=120.50 Aligned_cols=158 Identities=14% Similarity=0.139 Sum_probs=107.3
Q ss_pred HHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeChHHHHHHHHHHHHCCCCCcEEEEEcccccccCCCcee
Q 014247 102 AAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVD 180 (428)
Q Consensus 102 ~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~D 180 (428)
..+.......+..+|||||||+|.++..++++ ..-+++..|..++++.|++.+...+ .++|+++.+|+.+.+. ..+|
T Consensus 169 ~~~~~~~~~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~~~a~~~~~~~~-~~rv~~~~gD~~~~~~-~~~D 246 (353)
T 4a6d_A 169 RSVLTAFDLSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQE-EEQIDFQEGDFFKDPL-PEAD 246 (353)
T ss_dssp HHHHHSSCGGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEECHHHHHHHHHHSCC---CCSEEEEESCTTTSCC-CCCS
T ss_pred HHHHHhcCcccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccCHHHHHHHHHhhhhcc-cCceeeecCccccCCC-CCce
Confidence 34445555566789999999999999999987 3337888888888888888765443 5789999999987544 4689
Q ss_pred EEEEecchhhhcchhh--HHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhh--hhhhhccCC--CCcchhHHHH
Q 014247 181 VIISEWMGYMLLYESM--LGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSES--IDFWRNVYG--IDMSAMMPLA 254 (428)
Q Consensus 181 lVvs~~~~~~l~~~~~--~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~l~~~l 254 (428)
+|++.. ++++..+ ...+|+++++.|+|||++++....+. +-......... ...+....| ....+|..++
T Consensus 247 ~~~~~~---vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~--~~~~~~~~~~~~dl~ml~~~~g~ert~~e~~~ll 321 (353)
T 4a6d_A 247 LYILAR---VLHDWADGKCSHLLERIYHTCKPGGGILVIESLLD--EDRRGPLLTQLYSLNMLVQTEGQERTPTHYHMLL 321 (353)
T ss_dssp EEEEES---SGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCC--TTSCCCHHHHHHHHHHHHSSSCCCCCHHHHHHHH
T ss_pred EEEeee---ecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeC--CCCCCCHHHHHHHHHHHHhCCCcCCCHHHHHHHH
Confidence 999866 5555443 46789999999999999887543211 00001111111 111111122 3567899999
Q ss_pred HhcCCCCceEEe
Q 014247 255 KQCAFEEPSVET 266 (428)
Q Consensus 255 ~~~Gf~~~~~~~ 266 (428)
+++||+.+.+..
T Consensus 322 ~~AGf~~v~v~~ 333 (353)
T 4a6d_A 322 SSAGFRDFQFKK 333 (353)
T ss_dssp HHHTCEEEEEEC
T ss_pred HHCCCceEEEEE
Confidence 999998776543
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.5e-11 Score=116.12 Aligned_cols=103 Identities=21% Similarity=0.227 Sum_probs=80.9
Q ss_pred CCCCEEEEEcCCC---cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc-----------
Q 014247 111 IEGKVVVDVGCGT---GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE----------- 174 (428)
Q Consensus 111 ~~~~~VLDiGcGt---G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~----------- 174 (428)
....+|||||||+ |.++..+++. ...+|+++|+| .|++.|++++.. .++++++++|+.+..
T Consensus 76 ~~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~---~~~v~~~~~D~~~~~~~~~~~~~~~~ 152 (274)
T 2qe6_A 76 AGISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAK---DPNTAVFTADVRDPEYILNHPDVRRM 152 (274)
T ss_dssp TCCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTT---CTTEEEEECCTTCHHHHHHSHHHHHH
T ss_pred cCCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCC---CCCeEEEEeeCCCchhhhccchhhcc
Confidence 3457999999999 9888777664 23499999999 999999988743 246999999997531
Q ss_pred CC-CceeEEEEecchhhhcchh--hHHHHHHHHhcccccCeEEEccCC
Q 014247 175 ID-EEVDVIISEWMGYMLLYES--MLGSVITARDRWLKRGGLILPSYA 219 (428)
Q Consensus 175 ~~-~~~DlVvs~~~~~~l~~~~--~~~~~l~~~~~~LkpgG~lv~~~~ 219 (428)
++ .+||+|++.. ++++.. ++..+++++.++|+|||.|++...
T Consensus 153 ~d~~~~d~v~~~~---vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~ 197 (274)
T 2qe6_A 153 IDFSRPAAIMLVG---MLHYLSPDVVDRVVGAYRDALAPGSYLFMTSL 197 (274)
T ss_dssp CCTTSCCEEEETT---TGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred CCCCCCEEEEEec---hhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEe
Confidence 22 5899999876 444433 489999999999999999997653
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=4.8e-13 Score=126.23 Aligned_cols=110 Identities=20% Similarity=0.229 Sum_probs=76.0
Q ss_pred HHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeChHHHHHHHHHH-HHCCCCCcEEEE--EcccccccCCCce
Q 014247 103 AIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQANEVV-KANNLTDKVIVL--HGRVEDVEIDEEV 179 (428)
Q Consensus 103 ~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s~~~~~a~~~~-~~~~~~~~v~~~--~~d~~~l~~~~~~ 179 (428)
.+.+.....++.+|||||||+|.++..+++. .+|+|+|+++|+..+++.. .......++.++ ++|+.+++ +++|
T Consensus 73 ~i~~~~~~~~g~~VLDlGcGtG~~s~~la~~--~~V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~-~~~f 149 (276)
T 2wa2_A 73 WIDERGGVELKGTVVDLGCGRGSWSYYAASQ--PNVREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDVTKME-PFQA 149 (276)
T ss_dssp HHHHTTSCCCCEEEEEESCTTCHHHHHHHTS--TTEEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC-CCCC
T ss_pred HHHHcCCCCCCCEEEEeccCCCHHHHHHHHc--CCEEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcHhhCC-CCCc
Confidence 3334333467899999999999999999998 5899999997533222110 001111258999 99999876 5789
Q ss_pred eEEEEecchhhhcc-hhhHH---HHHHHHhcccccCe--EEEc
Q 014247 180 DVIISEWMGYMLLY-ESMLG---SVITARDRWLKRGG--LILP 216 (428)
Q Consensus 180 DlVvs~~~~~~l~~-~~~~~---~~l~~~~~~LkpgG--~lv~ 216 (428)
|+|+|+.. +.... ..+.. .++..+.++|+||| .+++
T Consensus 150 D~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~ 191 (276)
T 2wa2_A 150 DTVLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCV 191 (276)
T ss_dssp SEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEE
T ss_pred CEEEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEE
Confidence 99999764 22211 11111 37888999999999 8886
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.30 E-value=9.8e-12 Score=123.03 Aligned_cols=105 Identities=18% Similarity=0.156 Sum_probs=84.2
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc--CCCceeEEEEecc
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE--IDEEVDVIISEWM 187 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~--~~~~~DlVvs~~~ 187 (428)
.++.+|||+|||+|.+++.+++.|+. |+++|+| .+++.|+++++.|++.. .+.++|+.++. ..+.||+|++++.
T Consensus 213 ~~g~~VLDlg~GtG~~sl~~a~~ga~-V~avDis~~al~~a~~n~~~ng~~~--~~~~~D~~~~l~~~~~~fD~Ii~dpP 289 (393)
T 4dmg_A 213 RPGERVLDVYSYVGGFALRAARKGAY-ALAVDKDLEALGVLDQAALRLGLRV--DIRHGEALPTLRGLEGPFHHVLLDPP 289 (393)
T ss_dssp CTTCEEEEESCTTTHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHHTCCC--EEEESCHHHHHHTCCCCEEEEEECCC
T ss_pred cCCCeEEEcccchhHHHHHHHHcCCe-EEEEECCHHHHHHHHHHHHHhCCCC--cEEEccHHHHHHHhcCCCCEEEECCC
Confidence 35899999999999999999999885 9999999 99999999999999875 45689988752 2345999999763
Q ss_pred hhh------hcchhhHHHHHHHHhcccccCeEEEccC
Q 014247 188 GYM------LLYESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 188 ~~~------l~~~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
.+. .........++..+.++|+|||.++..+
T Consensus 290 ~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s 326 (393)
T 4dmg_A 290 TLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSS 326 (393)
T ss_dssp CCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 211 1112346788889999999999998544
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=9.1e-12 Score=121.07 Aligned_cols=96 Identities=26% Similarity=0.349 Sum_probs=83.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEEecchh
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWMGY 189 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~~~~~ 189 (428)
.++.+|||+|||+|.+++. ++ ++.+|+|+|+| .+++.|+++++.+++.++++++++|+.++. ++||+|++++..+
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~-~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~--~~fD~Vi~dpP~~ 269 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK-NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD--VKGNRVIMNLPKF 269 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT-TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC--CCEEEEEECCTTT
T ss_pred CCCCEEEEccCccCHHHHh-cc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc--CCCcEEEECCcHh
Confidence 5789999999999999999 88 67799999999 999999999999999778999999999876 7899999975322
Q ss_pred hhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 190 MLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 190 ~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
...++..+.++|+|||.+++.
T Consensus 270 -------~~~~l~~~~~~L~~gG~l~~~ 290 (336)
T 2yx1_A 270 -------AHKFIDKALDIVEEGGVIHYY 290 (336)
T ss_dssp -------GGGGHHHHHHHEEEEEEEEEE
T ss_pred -------HHHHHHHHHHHcCCCCEEEEE
Confidence 126777888999999998864
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.30 E-value=6.8e-13 Score=122.11 Aligned_cols=148 Identities=18% Similarity=0.219 Sum_probs=87.7
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEE-ccccccc---
Q 014247 100 YRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLH-GRVEDVE--- 174 (428)
Q Consensus 100 ~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~-~d~~~l~--- 174 (428)
+.+++.......++++|||||||+|.++..+++.|+.+|+|+|+| .|++.|+++.. ++.... .++..+.
T Consensus 25 L~~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~------~~~~~~~~~~~~~~~~~ 98 (232)
T 3opn_A 25 LEKALKEFHLEINGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDE------RVVVMEQFNFRNAVLAD 98 (232)
T ss_dssp HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCT------TEEEECSCCGGGCCGGG
T ss_pred HHHHHHHcCCCCCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCc------cccccccceEEEeCHhH
Confidence 445555544345678999999999999999999987799999999 99988765422 122211 1222111
Q ss_pred CCC-ceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhh--hhh--hccCCCCcch
Q 014247 175 IDE-EVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESI--DFW--RNVYGIDMSA 249 (428)
Q Consensus 175 ~~~-~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~ 249 (428)
++. .+|.+.+.. .+.. +..++.++.++|||||.+++... |.. ...+.... ... ...+......
T Consensus 99 ~~~~~~d~~~~D~---v~~~---l~~~l~~i~rvLkpgG~lv~~~~-----p~~-e~~~~~~~~~G~~~d~~~~~~~~~~ 166 (232)
T 3opn_A 99 FEQGRPSFTSIDV---SFIS---LDLILPPLYEILEKNGEVAALIK-----PQF-EAGREQVGKNGIIRDPKVHQMTIEK 166 (232)
T ss_dssp CCSCCCSEEEECC---SSSC---GGGTHHHHHHHSCTTCEEEEEEC-----HHH-HSCHHHHC-CCCCCCHHHHHHHHHH
T ss_pred cCcCCCCEEEEEE---Ehhh---HHHHHHHHHHhccCCCEEEEEEC-----ccc-ccCHHHhCcCCeecCcchhHHHHHH
Confidence 112 255555443 1111 26789999999999999886311 100 00000000 000 0011124567
Q ss_pred hHHHHHhcCCCCceEE
Q 014247 250 MMPLAKQCAFEEPSVE 265 (428)
Q Consensus 250 l~~~l~~~Gf~~~~~~ 265 (428)
+..+++++||+...+.
T Consensus 167 l~~~l~~aGf~v~~~~ 182 (232)
T 3opn_A 167 VLKTATQLGFSVKGLT 182 (232)
T ss_dssp HHHHHHHHTEEEEEEE
T ss_pred HHHHHHHCCCEEEEEE
Confidence 8889999999865544
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.30 E-value=7.8e-12 Score=114.28 Aligned_cols=100 Identities=19% Similarity=0.202 Sum_probs=80.6
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCC------CeEEEEeCh-HHHHHHHHHHHHCCC----CCcEEEEEccccccc----
Q 014247 110 FIEGKVVVDVGCGTGILSIFCAQAGA------KRVYAVDAS-DIAVQANEVVKANNL----TDKVIVLHGRVEDVE---- 174 (428)
Q Consensus 110 ~~~~~~VLDiGcGtG~ls~~la~~g~------~~V~giD~s-~~~~~a~~~~~~~~~----~~~v~~~~~d~~~l~---- 174 (428)
..++.+|||||||+|.++..+++... .+|+++|++ .+++.|++++...++ .++++++.+|+.+..
T Consensus 78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 157 (227)
T 2pbf_A 78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEK 157 (227)
T ss_dssp SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHH
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccC
Confidence 46789999999999999999998732 499999999 999999999888773 346999999998753
Q ss_pred C-CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccC
Q 014247 175 I-DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 175 ~-~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
. .++||+|++.. .+.+ +++.+.++|+|||++++..
T Consensus 158 ~~~~~fD~I~~~~---~~~~------~~~~~~~~LkpgG~lv~~~ 193 (227)
T 2pbf_A 158 KELGLFDAIHVGA---SASE------LPEILVDLLAENGKLIIPI 193 (227)
T ss_dssp HHHCCEEEEEECS---BBSS------CCHHHHHHEEEEEEEEEEE
T ss_pred ccCCCcCEEEECC---chHH------HHHHHHHhcCCCcEEEEEE
Confidence 2 37899999865 2222 3467788999999998653
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=1.7e-11 Score=120.88 Aligned_cols=117 Identities=16% Similarity=0.184 Sum_probs=90.1
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCC-CeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc
Q 014247 97 TETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGA-KRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE 174 (428)
Q Consensus 97 ~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~-~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~ 174 (428)
.+.+...+.... ..++.+|||+|||+|.++..++..+. .+|+|+|++ .+++.|++++..+++.++++++++|+.+++
T Consensus 203 ~~~la~~l~~~~-~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~ 281 (373)
T 3tm4_A 203 KASIANAMIELA-ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLS 281 (373)
T ss_dssp CHHHHHHHHHHH-TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGG
T ss_pred cHHHHHHHHHhh-cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCC
Confidence 344555555555 67889999999999999999999854 389999999 999999999999999778999999999987
Q ss_pred CC-CceeEEEEecchh-hhcc----hhhHHHHHHHHhcccccCeEEE
Q 014247 175 ID-EEVDVIISEWMGY-MLLY----ESMLGSVITARDRWLKRGGLIL 215 (428)
Q Consensus 175 ~~-~~~DlVvs~~~~~-~l~~----~~~~~~~l~~~~~~LkpgG~lv 215 (428)
.+ ++||+|++++... .+.. ......+++.+.++| +|+.++
T Consensus 282 ~~~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l-~g~~~~ 327 (373)
T 3tm4_A 282 QYVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL-EKRGVF 327 (373)
T ss_dssp GTCSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE-EEEEEE
T ss_pred cccCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc-CCeEEE
Confidence 65 7899999986311 1111 122367888888888 333333
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.29 E-value=1e-11 Score=115.22 Aligned_cols=106 Identities=15% Similarity=0.253 Sum_probs=80.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCC-CeEEEEeCh-HHHHHHHHHHHHC--------CCCCcEEEEEccccc-cc--C-C
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGA-KRVYAVDAS-DIAVQANEVVKAN--------NLTDKVIVLHGRVED-VE--I-D 176 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~-~~V~giD~s-~~~~~a~~~~~~~--------~~~~~v~~~~~d~~~-l~--~-~ 176 (428)
.++.+|||||||+|.++..+++.+. .+|+|+|+| .+++.|++++..+ ++. ++.++++|+.+ ++ + .
T Consensus 48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~-nv~~~~~D~~~~l~~~~~~ 126 (246)
T 2vdv_E 48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQ-NINVLRGNAMKFLPNFFEK 126 (246)
T ss_dssp SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTT-TEEEEECCTTSCGGGTSCT
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCC-cEEEEeccHHHHHHHhccc
Confidence 5678999999999999999999864 389999999 9999999988775 664 59999999987 44 3 3
Q ss_pred CceeEEEEecchhhhcc-----hhhHHHHHHHHhcccccCeEEEcc
Q 014247 177 EEVDVIISEWMGYMLLY-----ESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 177 ~~~DlVvs~~~~~~l~~-----~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
+.+|.|+.......... ......++..+.++|+|||.+++.
T Consensus 127 ~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~ 172 (246)
T 2vdv_E 127 GQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTI 172 (246)
T ss_dssp TCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEE
T ss_pred cccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEE
Confidence 78999986421100000 000157899999999999999873
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=5.2e-12 Score=119.69 Aligned_cols=106 Identities=17% Similarity=0.138 Sum_probs=81.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHC--CC--------CCcEEEEEccccccc-CCCc
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKAN--NL--------TDKVIVLHGRVEDVE-IDEE 178 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~--~~--------~~~v~~~~~d~~~l~-~~~~ 178 (428)
.++.+|||||||+|.++..+++.+..+|+++|++ .+++.|++++ .. ++ ..+++++.+|+.+.. .+++
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~ 152 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG 152 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred CCCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcccCC
Confidence 4568999999999999999998876799999999 9999999887 33 22 457999999986631 1578
Q ss_pred eeEEEEecchhhhcchh-hHHHHHHHHhcccccCeEEEcc
Q 014247 179 VDVIISEWMGYMLLYES-MLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 179 ~DlVvs~~~~~~l~~~~-~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
||+|+++.......... ....+++.+.++|+|||++++.
T Consensus 153 fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~ 192 (281)
T 1mjf_A 153 FDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQ 192 (281)
T ss_dssp EEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEE
T ss_pred eeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 99999976321111011 1367899999999999999875
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=6.4e-12 Score=124.36 Aligned_cols=106 Identities=24% Similarity=0.253 Sum_probs=88.2
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC-----CCceeEEEEe
Q 014247 112 EGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI-----DEEVDVIISE 185 (428)
Q Consensus 112 ~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~-----~~~~DlVvs~ 185 (428)
++.+|||+|||+|.++..+++. +.+|+|+|++ .+++.|++++..|++.+ ++++++|+.++.. ..+||+|+++
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~n~~~n~~~~-~~~~~~d~~~~~~~~~~~~~~fD~Ii~d 286 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGLGN-VRVLEANAFDLLRRLEKEGERFDLVVLD 286 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTCTT-EEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEeeeccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCC-ceEEECCHHHHHHHHHhcCCCeeEEEEC
Confidence 7789999999999999999998 6699999999 99999999999999976 9999999987532 4689999997
Q ss_pred cchhh------hcchhhHHHHHHHHhcccccCeEEEccCC
Q 014247 186 WMGYM------LLYESMLGSVITARDRWLKRGGLILPSYA 219 (428)
Q Consensus 186 ~~~~~------l~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 219 (428)
+..+. .........++..+.++|+|||.++++..
T Consensus 287 pP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 326 (382)
T 1wxx_A 287 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASC 326 (382)
T ss_dssp CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 63211 11224567889999999999999987543
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=5.8e-12 Score=121.54 Aligned_cols=107 Identities=17% Similarity=0.129 Sum_probs=82.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHH--CCC-CCcEEEEEccccccc--CCCceeEEE
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKA--NNL-TDKVIVLHGRVEDVE--IDEEVDVII 183 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~--~~~-~~~v~~~~~d~~~l~--~~~~~DlVv 183 (428)
.++.+|||||||+|.++..+++. +..+|+++|++ .+++.|++++.. +++ ..+++++.+|+.+.. .+++||+|+
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi 194 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 194 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence 45689999999999999999987 56699999999 999999998764 233 357999999987642 247899999
Q ss_pred EecchhhhcchhhH-HHHHHHHhcccccCeEEEcc
Q 014247 184 SEWMGYMLLYESML-GSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 184 s~~~~~~l~~~~~~-~~~l~~~~~~LkpgG~lv~~ 217 (428)
++............ ..+++.+.++|+|||++++.
T Consensus 195 ~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 229 (321)
T 2pt6_A 195 VDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQ 229 (321)
T ss_dssp EECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEE
T ss_pred ECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 97632111111111 78899999999999999874
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=2.4e-11 Score=119.44 Aligned_cols=152 Identities=17% Similarity=0.158 Sum_probs=102.1
Q ss_pred HHhccC-CCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeChHHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeE
Q 014247 104 IMQNQS-FIEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDV 181 (428)
Q Consensus 104 i~~~~~-~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~Dl 181 (428)
+...+. ..+..+|||||||+|.++..+++. ...+++++|+..+++.|++ ..+++++.+|+.+ +.+.. |+
T Consensus 192 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~~D~~~-~~p~~-D~ 262 (364)
T 3p9c_A 192 LLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQ-------FPGVTHVGGDMFK-EVPSG-DT 262 (364)
T ss_dssp HHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCC-------CTTEEEEECCTTT-CCCCC-SE
T ss_pred HHHhcccccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecCHHHHHhhhh-------cCCeEEEeCCcCC-CCCCC-CE
Confidence 444443 556789999999999999999886 3348999999877665543 1469999999987 55544 99
Q ss_pred EEEecchhhhcch--hhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchh--hhhh--hh---hccCCCCcchhHH
Q 014247 182 IISEWMGYMLLYE--SMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYS--ESID--FW---RNVYGIDMSAMMP 252 (428)
Q Consensus 182 Vvs~~~~~~l~~~--~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~--~~~~--~~---~~~~~~~~~~l~~ 252 (428)
|++.. ++++. .+...+|+++++.|+|||++++........+.. ..... .... .+ ......+..+|..
T Consensus 263 v~~~~---vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~-~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ 338 (364)
T 3p9c_A 263 ILMKW---ILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEA-NPSSQGVFHVDMIMLAHNPGGRERYEREFQA 338 (364)
T ss_dssp EEEES---CGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSCCS-SHHHHHHHHHHHHHHHHCSSCCCCBHHHHHH
T ss_pred EEehH---HhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCc-chhhhhHHHhHHHHHhcccCCccCCHHHHHH
Confidence 99866 55543 446789999999999999998765432110000 00000 0011 11 1112234678999
Q ss_pred HHHhcCCCCceEEeec
Q 014247 253 LAKQCAFEEPSVETIT 268 (428)
Q Consensus 253 ~l~~~Gf~~~~~~~~~ 268 (428)
+++++||+.+.+....
T Consensus 339 ll~~AGF~~v~~~~~~ 354 (364)
T 3p9c_A 339 LARGAGFTGVKSTYIY 354 (364)
T ss_dssp HHHHTTCCEEEEEEEE
T ss_pred HHHHCCCceEEEEEcC
Confidence 9999999988776553
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=7.3e-12 Score=130.23 Aligned_cols=100 Identities=20% Similarity=0.231 Sum_probs=79.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccc--cC-CCceeEEEEec
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDV--EI-DEEVDVIISEW 186 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l--~~-~~~~DlVvs~~ 186 (428)
.++.+|||||||.|.++..+|+.|+ +|+|||++ .+++.|+..+.+++.. +|++.+++++++ .. +++||+|+|..
T Consensus 65 ~~~~~vLDvGCG~G~~~~~la~~ga-~V~giD~~~~~i~~a~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~fD~v~~~e 142 (569)
T 4azs_A 65 GRPLNVLDLGCAQGFFSLSLASKGA-TIVGIDFQQENINVCRALAEENPDF-AAEFRVGRIEEVIAALEEGEFDLAIGLS 142 (569)
T ss_dssp TSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTSTTS-EEEEEECCHHHHHHHCCTTSCSEEEEES
T ss_pred CCCCeEEEECCCCcHHHHHHHhCCC-EEEEECCCHHHHHHHHHHHHhcCCC-ceEEEECCHHHHhhhccCCCccEEEECc
Confidence 4568999999999999999999998 89999999 9999999998887754 499999999987 22 47899999965
Q ss_pred chhhhcchhhHHHH--HHHHhcccccCeEEE
Q 014247 187 MGYMLLYESMLGSV--ITARDRWLKRGGLIL 215 (428)
Q Consensus 187 ~~~~l~~~~~~~~~--l~~~~~~LkpgG~lv 215 (428)
+++|..++..+ +.++.+.|+++|..+
T Consensus 143 ---~~ehv~~~~~~~~~~~~~~tl~~~~~~~ 170 (569)
T 4azs_A 143 ---VFHHIVHLHGIDEVKRLLSRLADVTQAV 170 (569)
T ss_dssp ---CHHHHHHHHCHHHHHHHHHHHHHHSSEE
T ss_pred ---chhcCCCHHHHHHHHHHHHHhcccccee
Confidence 55555554433 334556677777544
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.1e-11 Score=118.17 Aligned_cols=108 Identities=15% Similarity=0.091 Sum_probs=81.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHH--CCC-CCcEEEEEcccccc-cC-CCceeEEE
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKA--NNL-TDKVIVLHGRVEDV-EI-DEEVDVII 183 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~--~~~-~~~v~~~~~d~~~l-~~-~~~~DlVv 183 (428)
..+.+|||||||+|.++..+++. +..+|+++|++ .+++.|++++.. +++ ..+++++.+|+.+. +. +++||+|+
T Consensus 89 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 168 (296)
T 1inl_A 89 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 168 (296)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEE
Confidence 45689999999999999999987 56799999999 999999988754 333 35799999998763 22 47899999
Q ss_pred Eecchhhhcchh--hHHHHHHHHhcccccCeEEEccC
Q 014247 184 SEWMGYMLLYES--MLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 184 s~~~~~~l~~~~--~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
++.......... ....+++.+.++|+|||++++..
T Consensus 169 ~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 205 (296)
T 1inl_A 169 IDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAET 205 (296)
T ss_dssp EEC----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 875321011000 13688999999999999999754
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.25 E-value=3.8e-11 Score=113.92 Aligned_cols=86 Identities=20% Similarity=0.326 Sum_probs=73.1
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCC
Q 014247 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDE 177 (428)
Q Consensus 99 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~ 177 (428)
...+.|.+.+...++.+|||||||+|.++..+++.+. +|+|+|++ .+++.+++++..++..++++++++|+.+++++
T Consensus 15 ~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~- 92 (285)
T 1zq9_A 15 LIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP- 92 (285)
T ss_dssp HHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC-
T ss_pred HHHHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhhCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccch-
Confidence 3455566666667889999999999999999999865 99999999 99999999887766656799999999987665
Q ss_pred ceeEEEEec
Q 014247 178 EVDVIISEW 186 (428)
Q Consensus 178 ~~DlVvs~~ 186 (428)
.||+|+++.
T Consensus 93 ~fD~vv~nl 101 (285)
T 1zq9_A 93 FFDTCVANL 101 (285)
T ss_dssp CCSEEEEEC
T ss_pred hhcEEEEec
Confidence 799999976
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.25 E-value=2.7e-11 Score=117.33 Aligned_cols=108 Identities=13% Similarity=0.123 Sum_probs=83.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHC--CC-CCcEEEEEcccccc-c-C-CCceeEE
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKAN--NL-TDKVIVLHGRVEDV-E-I-DEEVDVI 182 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~--~~-~~~v~~~~~d~~~l-~-~-~~~~DlV 182 (428)
.++.+|||||||+|.++..+++. +..+|+++|++ .+++.|++++... ++ ..+++++.+|+.+. + . .++||+|
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI 198 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 198 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence 46689999999999999999987 45699999999 9999999987642 34 35799999998774 2 2 3789999
Q ss_pred EEecchhhhcch-hhHHHHHHHHhcccccCeEEEccC
Q 014247 183 ISEWMGYMLLYE-SMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 183 vs~~~~~~l~~~-~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
+++......... .....+++.+.++|+|||++++..
T Consensus 199 i~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 235 (334)
T 1xj5_A 199 IVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQA 235 (334)
T ss_dssp EECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 997532111111 114788999999999999999753
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.4e-11 Score=117.88 Aligned_cols=108 Identities=17% Similarity=0.136 Sum_probs=81.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHH--CCC-CCcEEEEEcccccc-c-CCCceeEEE
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKA--NNL-TDKVIVLHGRVEDV-E-IDEEVDVII 183 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~--~~~-~~~v~~~~~d~~~l-~-~~~~~DlVv 183 (428)
.++++|||||||+|.++..+++. +..+|+++|++ .+++.|++++.. +++ ..+++++.+|+.+. + .+++||+|+
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii 173 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence 46789999999999999999987 45699999999 999999998765 344 46799999998763 2 247899999
Q ss_pred Eecchhhhcch-hhHHHHHHHHhcccccCeEEEccC
Q 014247 184 SEWMGYMLLYE-SMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 184 s~~~~~~l~~~-~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
++......... .....+++.+.++|+|||++++..
T Consensus 174 ~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 209 (304)
T 2o07_A 174 TDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG 209 (304)
T ss_dssp EECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred ECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEec
Confidence 97632211100 123578999999999999999753
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.25 E-value=1.6e-11 Score=112.33 Aligned_cols=100 Identities=15% Similarity=0.229 Sum_probs=78.2
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHc-CC------CeEEEEeCh-HHHHHHHHHHHHCCC----CCcEEEEEcccccccCC-
Q 014247 110 FIEGKVVVDVGCGTGILSIFCAQA-GA------KRVYAVDAS-DIAVQANEVVKANNL----TDKVIVLHGRVEDVEID- 176 (428)
Q Consensus 110 ~~~~~~VLDiGcGtG~ls~~la~~-g~------~~V~giD~s-~~~~~a~~~~~~~~~----~~~v~~~~~d~~~l~~~- 176 (428)
..++.+|||||||+|.++..+++. +. .+|+++|++ .+++.|++++...++ ..+++++.+|+.+....
T Consensus 82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 161 (227)
T 1r18_A 82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPN 161 (227)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGG
T ss_pred CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCcC
Confidence 467889999999999999999885 42 489999999 999999998876551 23599999998873222
Q ss_pred CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccC
Q 014247 177 EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 177 ~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
++||+|++.. .+.+ +.+++.+.|||||++++..
T Consensus 162 ~~fD~I~~~~---~~~~------~~~~~~~~LkpgG~lvi~~ 194 (227)
T 1r18_A 162 APYNAIHVGA---AAPD------TPTELINQLASGGRLIVPV 194 (227)
T ss_dssp CSEEEEEECS---CBSS------CCHHHHHTEEEEEEEEEEE
T ss_pred CCccEEEECC---chHH------HHHHHHHHhcCCCEEEEEE
Confidence 7899999865 2222 2267788999999998653
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.3e-11 Score=124.14 Aligned_cols=113 Identities=14% Similarity=0.110 Sum_probs=89.6
Q ss_pred ccCCCCCCEEEEEcCCCcHHHHHHHHc--CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc--CCCceeE
Q 014247 107 NQSFIEGKVVVDVGCGTGILSIFCAQA--GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE--IDEEVDV 181 (428)
Q Consensus 107 ~~~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~--~~~~~Dl 181 (428)
.+...++.+|||+|||+|..+..+|+. +..+|+|+|++ .+++.++++++..++. +.++++|+.++. .+++||+
T Consensus 96 ~L~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~--v~~~~~Da~~l~~~~~~~FD~ 173 (464)
T 3m6w_A 96 LLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP--LAVTQAPPRALAEAFGTYFHR 173 (464)
T ss_dssp HHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC--CEEECSCHHHHHHHHCSCEEE
T ss_pred hcCcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe--EEEEECCHHHhhhhccccCCE
Confidence 344578999999999999999999976 33589999999 9999999999999986 899999998875 3588999
Q ss_pred EEEecchh--h-hcchh----------------hHHHHHHHHhcccccCeEEEccCCee
Q 014247 182 IISEWMGY--M-LLYES----------------MLGSVITARDRWLKRGGLILPSYATL 221 (428)
Q Consensus 182 Vvs~~~~~--~-l~~~~----------------~~~~~l~~~~~~LkpgG~lv~~~~~~ 221 (428)
|+++.... . +.... ....+++.+.++|||||+|+.+++++
T Consensus 174 Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~ 232 (464)
T 3m6w_A 174 VLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTF 232 (464)
T ss_dssp EEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred EEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccC
Confidence 99754211 1 11111 12778999999999999999876654
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=5e-12 Score=116.66 Aligned_cols=97 Identities=11% Similarity=0.110 Sum_probs=76.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-----CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccc---cC-C-Cce
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQA-----GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDV---EI-D-EEV 179 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~-----g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l---~~-~-~~~ 179 (428)
.++.+|||||||+|..+..+++. ...+|+|||++ .+++.|+ ++..+++++++|+.+. +. . .+|
T Consensus 80 ~~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~------~~~~~v~~~~gD~~~~~~l~~~~~~~f 153 (236)
T 2bm8_A 80 LRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA------SDMENITLHQGDCSDLTTFEHLREMAH 153 (236)
T ss_dssp HCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG------GGCTTEEEEECCSSCSGGGGGGSSSCS
T ss_pred cCCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh------ccCCceEEEECcchhHHHHHhhccCCC
Confidence 35679999999999999999986 23599999999 8887776 2235799999999884 32 2 379
Q ss_pred eEEEEecchhhhcchhhHHHHHHHHhc-ccccCeEEEccCC
Q 014247 180 DVIISEWMGYMLLYESMLGSVITARDR-WLKRGGLILPSYA 219 (428)
Q Consensus 180 DlVvs~~~~~~l~~~~~~~~~l~~~~~-~LkpgG~lv~~~~ 219 (428)
|+|++... +. +...++.++.+ +|||||++++...
T Consensus 154 D~I~~d~~-----~~-~~~~~l~~~~r~~LkpGG~lv~~d~ 188 (236)
T 2bm8_A 154 PLIFIDNA-----HA-NTFNIMKWAVDHLLEEGDYFIIEDM 188 (236)
T ss_dssp SEEEEESS-----CS-SHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred CEEEECCc-----hH-hHHHHHHHHHHhhCCCCCEEEEEeC
Confidence 99998642 22 57788999997 9999999997653
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=4.5e-12 Score=121.36 Aligned_cols=102 Identities=21% Similarity=0.260 Sum_probs=71.3
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeC----h-HHHHHHHHHHHHCCCCCcEEEEEc-ccccccCCCceeEEE
Q 014247 110 FIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDA----S-DIAVQANEVVKANNLTDKVIVLHG-RVEDVEIDEEVDVII 183 (428)
Q Consensus 110 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~----s-~~~~~a~~~~~~~~~~~~v~~~~~-d~~~l~~~~~~DlVv 183 (428)
..++.+|||||||+|.++..+++. .+|+|+|+ + .+++.+. ....+ .+++.++++ |+.+++ +++||+|+
T Consensus 80 ~~~g~~VLDlGcG~G~~s~~la~~--~~V~gvD~~~~~~~~~~~~~~--~~~~~-~~~v~~~~~~D~~~l~-~~~fD~V~ 153 (305)
T 2p41_A 80 VTPEGKVVDLGCGRGGWSYYCGGL--KNVREVKGLTKGGPGHEEPIP--MSTYG-WNLVRLQSGVDVFFIP-PERCDTLL 153 (305)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTS--TTEEEEEEECCCSTTSCCCCC--CCSTT-GGGEEEECSCCTTTSC-CCCCSEEE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHhc--CCEEEEeccccCchhHHHHHH--hhhcC-CCCeEEEeccccccCC-cCCCCEEE
Confidence 456889999999999999999998 47999999 4 4332110 01111 146999999 888775 36899999
Q ss_pred EecchhhhcchhhHH---HHHHHHhcccccCeEEEcc
Q 014247 184 SEWMGYMLLYESMLG---SVITARDRWLKRGGLILPS 217 (428)
Q Consensus 184 s~~~~~~l~~~~~~~---~~l~~~~~~LkpgG~lv~~ 217 (428)
|+...+...+..+.. .+|..+.++|||||.+++.
T Consensus 154 sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~k 190 (305)
T 2p41_A 154 CDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVK 190 (305)
T ss_dssp ECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred ECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 976332111221111 4788888999999988863
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=99.23 E-value=2e-11 Score=122.69 Aligned_cols=114 Identities=17% Similarity=0.141 Sum_probs=90.1
Q ss_pred ccCCCCCCEEEEEcCCCcHHHHHHHHc--CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc--CCCceeE
Q 014247 107 NQSFIEGKVVVDVGCGTGILSIFCAQA--GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE--IDEEVDV 181 (428)
Q Consensus 107 ~~~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~--~~~~~Dl 181 (428)
.+...++.+|||+|||+|..+..+|+. +..+|+|+|++ .+++.++++++..++.+ +.++++|+.++. .+++||+
T Consensus 100 ~L~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~n-v~v~~~Da~~l~~~~~~~FD~ 178 (456)
T 3m4x_A 100 AAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSN-AIVTNHAPAELVPHFSGFFDR 178 (456)
T ss_dssp HHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSS-EEEECCCHHHHHHHHTTCEEE
T ss_pred HcCCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEeCCHHHhhhhccccCCE
Confidence 344578999999999999999999876 34599999999 99999999999999874 999999998864 3578999
Q ss_pred EEEecchh---hhcch----------------hhHHHHHHHHhcccccCeEEEccCCee
Q 014247 182 IISEWMGY---MLLYE----------------SMLGSVITARDRWLKRGGLILPSYATL 221 (428)
Q Consensus 182 Vvs~~~~~---~l~~~----------------~~~~~~l~~~~~~LkpgG~lv~~~~~~ 221 (428)
|+++...+ .+... .....+|..+.++|||||+|+.+++++
T Consensus 179 Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 237 (456)
T 3m4x_A 179 IVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTF 237 (456)
T ss_dssp EEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred EEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeec
Confidence 99865311 11111 112378999999999999999876654
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.23 E-value=1.8e-11 Score=115.51 Aligned_cols=108 Identities=16% Similarity=0.100 Sum_probs=83.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHH--CCC-CCcEEEEEcccccc-c-CCCceeEEE
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKA--NNL-TDKVIVLHGRVEDV-E-IDEEVDVII 183 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~--~~~-~~~v~~~~~d~~~l-~-~~~~~DlVv 183 (428)
..+++|||||||+|.++..+++. +..+|+++|++ .+++.|++++.. +++ .++++++.+|+.+. . ..++||+|+
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii 153 (275)
T 1iy9_A 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (275)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEE
Confidence 35689999999999999999987 67799999999 999999987754 234 45799999998763 2 247899999
Q ss_pred Eecchhhhcch-hhHHHHHHHHhcccccCeEEEccC
Q 014247 184 SEWMGYMLLYE-SMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 184 s~~~~~~l~~~-~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
++......... .....+++.+.++|+|||++++..
T Consensus 154 ~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~ 189 (275)
T 1iy9_A 154 VDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT 189 (275)
T ss_dssp ESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred ECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 97632111100 013678999999999999999754
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.23 E-value=3e-11 Score=119.12 Aligned_cols=98 Identities=14% Similarity=0.144 Sum_probs=83.2
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCC-CeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccc-ccC--CCceeEEEEe
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGA-KRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVED-VEI--DEEVDVIISE 185 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~-~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~-l~~--~~~~DlVvs~ 185 (428)
.++.+|||+| |+|.++..+++.+. .+|+|+|++ .+++.|+++++.+++. +++++++|+.+ ++. .++||+|+++
T Consensus 171 ~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~-~v~~~~~D~~~~l~~~~~~~fD~Vi~~ 248 (373)
T 2qm3_A 171 LENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYE-DIEIFTFDLRKPLPDYALHKFDTFITD 248 (373)
T ss_dssp STTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCC-CEEEECCCTTSCCCTTTSSCBSEEEEC
T ss_pred CCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CEEEEEChhhhhchhhccCCccEEEEC
Confidence 4688999999 99999999998875 699999999 9999999999998887 69999999988 653 3689999998
Q ss_pred cchhhhcchhhHHHHHHHHhcccccCeEE
Q 014247 186 WMGYMLLYESMLGSVITARDRWLKRGGLI 214 (428)
Q Consensus 186 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l 214 (428)
... .... ...+++.+.++|+|||++
T Consensus 249 ~p~---~~~~-~~~~l~~~~~~LkpgG~~ 273 (373)
T 2qm3_A 249 PPE---TLEA-IRAFVGRGIATLKGPRCA 273 (373)
T ss_dssp CCS---SHHH-HHHHHHHHHHTBCSTTCE
T ss_pred CCC---chHH-HHHHHHHHHHHcccCCeE
Confidence 632 1122 588999999999999943
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=2.6e-11 Score=118.58 Aligned_cols=141 Identities=12% Similarity=0.126 Sum_probs=97.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeChHHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEEecchh
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWMGY 189 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~~~~~ 189 (428)
.++.+|||||||+|.++..+++. +..+++++|+..+++.|++ . .+++++.+|+.+ +.+. ||+|++..
T Consensus 187 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~-~~v~~~~~d~~~-~~p~-~D~v~~~~--- 254 (352)
T 1fp2_A 187 DGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSG------S-NNLTYVGGDMFT-SIPN-ADAVLLKY--- 254 (352)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCC------B-TTEEEEECCTTT-CCCC-CSEEEEES---
T ss_pred ccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeCHHHHhhccc------C-CCcEEEeccccC-CCCC-ccEEEeeh---
Confidence 46689999999999999999987 2348999999767665543 1 249999999976 4444 99999876
Q ss_pred hhcchhhHH--HHHHHHhccccc---CeEEEccCCeeeEeecCCcc----chhhhhhh--h-hccCCCCcchhHHHHHhc
Q 014247 190 MLLYESMLG--SVITARDRWLKR---GGLILPSYATLYMAPVTHPD----RYSESIDF--W-RNVYGIDMSAMMPLAKQC 257 (428)
Q Consensus 190 ~l~~~~~~~--~~l~~~~~~Lkp---gG~lv~~~~~~~~~~~~~~~----~~~~~~~~--~-~~~~~~~~~~l~~~l~~~ 257 (428)
++++..+.. .+++++.++|+| ||++++...... -.... .......+ + ......+..++..+++++
T Consensus 255 ~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~---~~~~~~~~~~~~~~~d~~~~~~~g~~~t~~e~~~ll~~a 331 (352)
T 1fp2_A 255 ILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVID---KKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEA 331 (352)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEEC---TTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHHHT
T ss_pred hhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecC---CCCCccchhhhHhhccHHHHhccCCCCCHHHHHHHHHHC
Confidence 555555555 999999999999 999987654321 11100 00001111 0 011223567899999999
Q ss_pred CCCCceEEe
Q 014247 258 AFEEPSVET 266 (428)
Q Consensus 258 Gf~~~~~~~ 266 (428)
||+...+..
T Consensus 332 Gf~~~~~~~ 340 (352)
T 1fp2_A 332 GFQHYKISP 340 (352)
T ss_dssp TCCEEEEEE
T ss_pred CCCeeEEEe
Confidence 999876654
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.22 E-value=2.2e-11 Score=108.56 Aligned_cols=95 Identities=20% Similarity=0.350 Sum_probs=71.1
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeChHHHHHHHHHHHHCCCCCcEEEEEcccccccC--------C----C
Q 014247 110 FIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDVEI--------D----E 177 (428)
Q Consensus 110 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~--------~----~ 177 (428)
..++.+|||+|||+|.++..+++. ..+|+|+|++++. .. .+++++++|+.+... . +
T Consensus 23 ~~~g~~VLDlG~G~G~~s~~la~~-~~~V~gvD~~~~~----------~~-~~v~~~~~D~~~~~~~~~~~~~~~~~~~~ 90 (191)
T 3dou_A 23 VRKGDAVIEIGSSPGGWTQVLNSL-ARKIISIDLQEME----------EI-AGVRFIRCDIFKETIFDDIDRALREEGIE 90 (191)
T ss_dssp SCTTCEEEEESCTTCHHHHHHTTT-CSEEEEEESSCCC----------CC-TTCEEEECCTTSSSHHHHHHHHHHHHTCS
T ss_pred CCCCCEEEEEeecCCHHHHHHHHc-CCcEEEEeccccc----------cC-CCeEEEEccccCHHHHHHHHHHhhcccCC
Confidence 467899999999999999999998 4599999999431 12 359999999987542 1 4
Q ss_pred ceeEEEEecchhhh--------cchhhHHHHHHHHhcccccCeEEEc
Q 014247 178 EVDVIISEWMGYML--------LYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 178 ~~DlVvs~~~~~~l--------~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
+||+|+|+...... ........+++.+.++|||||.+++
T Consensus 91 ~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~ 137 (191)
T 3dou_A 91 KVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLL 137 (191)
T ss_dssp SEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred cceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEE
Confidence 89999997421111 0112246778888999999999985
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.22 E-value=1.1e-11 Score=119.11 Aligned_cols=108 Identities=19% Similarity=0.159 Sum_probs=80.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHC--CC-CCcEEEEEcccccc-c-CCCceeEEE
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKAN--NL-TDKVIVLHGRVEDV-E-IDEEVDVII 183 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~--~~-~~~v~~~~~d~~~l-~-~~~~~DlVv 183 (428)
.++++|||||||+|.++..+++. +..+|+++|++ .+++.|++++... ++ ..+++++.+|+.+. + .+++||+|+
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 186 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 186 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence 45689999999999999999987 45699999999 9999999987543 33 45799999998763 2 247899999
Q ss_pred EecchhhhcchhhH-HHHHHHHhcccccCeEEEccC
Q 014247 184 SEWMGYMLLYESML-GSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 184 s~~~~~~l~~~~~~-~~~l~~~~~~LkpgG~lv~~~ 218 (428)
++............ ..+++.+.++|+|||++++..
T Consensus 187 ~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 187 TDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp ECCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred EcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 97632211111111 788999999999999999764
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=3.5e-11 Score=114.05 Aligned_cols=107 Identities=17% Similarity=0.113 Sum_probs=83.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCC--C-CCcEEEEEccccccc--CCCceeEEE
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANN--L-TDKVIVLHGRVEDVE--IDEEVDVII 183 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~--~-~~~v~~~~~d~~~l~--~~~~~DlVv 183 (428)
.++++|||||||+|.++..+++. +..+|+++|++ .+++.|++++...+ + ..+++++.+|+.+.. .+++||+|+
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 156 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence 46689999999999999999987 35699999999 99999998865432 2 357999999987742 247899999
Q ss_pred EecchhhhcchhhH--HHHHHHHhcccccCeEEEccC
Q 014247 184 SEWMGYMLLYESML--GSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 184 s~~~~~~l~~~~~~--~~~l~~~~~~LkpgG~lv~~~ 218 (428)
++....... ...+ ..+++.+.++|+|||++++..
T Consensus 157 ~d~~~~~~~-~~~l~~~~~l~~~~~~L~pgG~lv~~~ 192 (283)
T 2i7c_A 157 VDSSDPIGP-AETLFNQNFYEKIYNALKPNGYCVAQC 192 (283)
T ss_dssp EECCCTTTG-GGGGSSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EcCCCCCCc-chhhhHHHHHHHHHHhcCCCcEEEEEC
Confidence 975322211 1222 789999999999999999754
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=99.22 E-value=3.6e-11 Score=118.85 Aligned_cols=120 Identities=19% Similarity=0.242 Sum_probs=96.8
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCC---------------------------------------Ce
Q 014247 97 TETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGA---------------------------------------KR 137 (428)
Q Consensus 97 ~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~---------------------------------------~~ 137 (428)
.+.+..++.......++.+|||++||+|.++..+|..+. .+
T Consensus 180 ~e~lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~ 259 (385)
T 3ldu_A 180 RETLAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFK 259 (385)
T ss_dssp CHHHHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCC
T ss_pred cHHHHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCce
Confidence 455777888887778889999999999999999987642 36
Q ss_pred EEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEEecc-hhhhcchhhHHHHHHHHhccccc--CeE
Q 014247 138 VYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWM-GYMLLYESMLGSVITARDRWLKR--GGL 213 (428)
Q Consensus 138 V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~~~-~~~l~~~~~~~~~l~~~~~~Lkp--gG~ 213 (428)
|+|+|++ .+++.|++++..+++.+.+++.++|+.++..+.+||+|++++. +.-+.....+..+++.+.+.|++ |+.
T Consensus 260 V~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~ 339 (385)
T 3ldu_A 260 IYGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSEDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWS 339 (385)
T ss_dssp EEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCSCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCE
T ss_pred EEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcCCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCE
Confidence 9999999 9999999999999998789999999999887789999999874 22222234567777777777776 666
Q ss_pred EEc
Q 014247 214 ILP 216 (428)
Q Consensus 214 lv~ 216 (428)
+++
T Consensus 340 ~~i 342 (385)
T 3ldu_A 340 YYL 342 (385)
T ss_dssp EEE
T ss_pred EEE
Confidence 553
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.21 E-value=6e-11 Score=106.19 Aligned_cols=90 Identities=23% Similarity=0.167 Sum_probs=70.7
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEEecch
Q 014247 110 FIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWMG 188 (428)
Q Consensus 110 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~~~~ 188 (428)
..++.+|||+|||+|.++..+++.|..+|+|+|++ .+++.|++++. +++++++|+.+++ ++||+|+++...
T Consensus 49 ~~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~------~~~~~~~d~~~~~--~~~D~v~~~~p~ 120 (200)
T 1ne2_A 49 NIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG------GVNFMVADVSEIS--GKYDTWIMNPPF 120 (200)
T ss_dssp SSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT------TSEEEECCGGGCC--CCEEEEEECCCC
T ss_pred CCCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC------CCEEEECcHHHCC--CCeeEEEECCCc
Confidence 45788999999999999999999877789999999 99999988754 4899999999875 789999998743
Q ss_pred hhhcchhhHHHHHHHHhccc
Q 014247 189 YMLLYESMLGSVITARDRWL 208 (428)
Q Consensus 189 ~~l~~~~~~~~~l~~~~~~L 208 (428)
+.... .....+++++.+.|
T Consensus 121 ~~~~~-~~~~~~l~~~~~~~ 139 (200)
T 1ne2_A 121 GSVVK-HSDRAFIDKAFETS 139 (200)
T ss_dssp --------CHHHHHHHHHHE
T ss_pred hhccC-chhHHHHHHHHHhc
Confidence 33322 22346778888877
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.21 E-value=7.2e-11 Score=116.41 Aligned_cols=120 Identities=22% Similarity=0.228 Sum_probs=98.0
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCC---------------------------------------Ce
Q 014247 97 TETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGA---------------------------------------KR 137 (428)
Q Consensus 97 ~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~---------------------------------------~~ 137 (428)
.+.+..++.......++..|||.+||+|.++..+|..+. .+
T Consensus 179 ~e~LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~ 258 (384)
T 3ldg_A 179 KENMAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLD 258 (384)
T ss_dssp CHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCC
T ss_pred cHHHHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCce
Confidence 356777787777778889999999999999999887533 25
Q ss_pred EEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEEecc-hhhhcchhhHHHHHHHHhccccc--CeE
Q 014247 138 VYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWM-GYMLLYESMLGSVITARDRWLKR--GGL 213 (428)
Q Consensus 138 V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~~~-~~~l~~~~~~~~~l~~~~~~Lkp--gG~ 213 (428)
|+|+|++ .+++.|++++..+++.+.++++++|+.+++.+.+||+|++++. +.-+.....+..+++.+.+.||+ ||.
T Consensus 259 v~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~ 338 (384)
T 3ldg_A 259 ISGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNKINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWS 338 (384)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCCCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSE
T ss_pred EEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCccCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcE
Confidence 9999999 9999999999999998889999999999887789999999873 33333445677777777777776 776
Q ss_pred EEc
Q 014247 214 ILP 216 (428)
Q Consensus 214 lv~ 216 (428)
+++
T Consensus 339 ~~i 341 (384)
T 3ldg_A 339 QFI 341 (384)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=2.1e-11 Score=106.09 Aligned_cols=104 Identities=22% Similarity=0.289 Sum_probs=76.0
Q ss_pred HHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CC-CeEEEEeChHHHHHHHHHHHHCCCCCcEEEEEccccccc------
Q 014247 103 AIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-GA-KRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDVE------ 174 (428)
Q Consensus 103 ~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~-~~V~giD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~------ 174 (428)
.+.......++.+|||+|||+|.++..+++. |. .+|+|+|+++++. . .+++++++|+.+.+
T Consensus 13 ~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~----------~-~~~~~~~~d~~~~~~~~~~~ 81 (180)
T 1ej0_A 13 IQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDP----------I-VGVDFLQGDFRDELVMKALL 81 (180)
T ss_dssp HHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCC----------C-TTEEEEESCTTSHHHHHHHH
T ss_pred HHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECccccc----------c-CcEEEEEcccccchhhhhhh
Confidence 3333333567889999999999999999987 43 5999999996321 1 35999999998865
Q ss_pred --CC-CceeEEEEecchhhhcch--h------hHHHHHHHHhcccccCeEEEcc
Q 014247 175 --ID-EEVDVIISEWMGYMLLYE--S------MLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 175 --~~-~~~DlVvs~~~~~~l~~~--~------~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
.+ ++||+|+++...+..... . ....+++.+.++|+|||.+++.
T Consensus 82 ~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~ 135 (180)
T 1ej0_A 82 ERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVK 135 (180)
T ss_dssp HHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccCCCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 43 789999996532211111 1 1268899999999999999863
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.21 E-value=2.9e-11 Score=113.42 Aligned_cols=101 Identities=20% Similarity=0.285 Sum_probs=78.8
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC-
Q 014247 100 YRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID- 176 (428)
Q Consensus 100 ~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~- 176 (428)
+.+.+...+. .++.+|||||||+|.++..+++. +..+|+|+|++ .+++.|+++. .++.++.+|+.+++++
T Consensus 74 ~~~~~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~ 146 (269)
T 1p91_A 74 IVAQLRERLD-DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY------PQVTFCVASSHRLPFSD 146 (269)
T ss_dssp HHHHHHHHSC-TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC------TTSEEEECCTTSCSBCT
T ss_pred HHHHHHHhcC-CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC------CCcEEEEcchhhCCCCC
Confidence 3444444332 46789999999999999999997 23489999999 9998887753 2489999999888765
Q ss_pred CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 177 EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 177 ~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
++||+|++... ..+++++.++|+|||.+++.
T Consensus 147 ~~fD~v~~~~~----------~~~l~~~~~~L~pgG~l~~~ 177 (269)
T 1p91_A 147 TSMDAIIRIYA----------PCKAEELARVVKPGGWVITA 177 (269)
T ss_dssp TCEEEEEEESC----------CCCHHHHHHHEEEEEEEEEE
T ss_pred CceeEEEEeCC----------hhhHHHHHHhcCCCcEEEEE
Confidence 78999998541 12478889999999999864
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.20 E-value=5.3e-11 Score=117.84 Aligned_cols=120 Identities=21% Similarity=0.214 Sum_probs=96.0
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCC---------------------------------------Ce
Q 014247 97 TETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGA---------------------------------------KR 137 (428)
Q Consensus 97 ~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~---------------------------------------~~ 137 (428)
.+.+..++.......++..|||.+||+|.++..+|..+. .+
T Consensus 186 ~e~lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~ 265 (393)
T 3k0b_A 186 KETMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLN 265 (393)
T ss_dssp CHHHHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCC
T ss_pred cHHHHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCce
Confidence 456777888887778889999999999999999887633 25
Q ss_pred EEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEEecc-hhhhcchhhHHHHHHHHhccccc--CeE
Q 014247 138 VYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWM-GYMLLYESMLGSVITARDRWLKR--GGL 213 (428)
Q Consensus 138 V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~~~-~~~l~~~~~~~~~l~~~~~~Lkp--gG~ 213 (428)
|+|+|++ .+++.|++++..+++.++++++++|+.+++.+.+||+|++++. +.-+.....+..+++.+.+.|++ ||.
T Consensus 266 V~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~ 345 (393)
T 3k0b_A 266 IIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWS 345 (393)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCCCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCE
T ss_pred EEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCCCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCE
Confidence 9999999 9999999999999998889999999999887789999999873 22222234466677777677765 776
Q ss_pred EEc
Q 014247 214 ILP 216 (428)
Q Consensus 214 lv~ 216 (428)
+++
T Consensus 346 ~~i 348 (393)
T 3k0b_A 346 VYV 348 (393)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=3.5e-11 Score=115.78 Aligned_cols=108 Identities=17% Similarity=0.159 Sum_probs=83.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHH--CC-C-CCcEEEEEcccccc-c-CCCceeEE
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKA--NN-L-TDKVIVLHGRVEDV-E-IDEEVDVI 182 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~--~~-~-~~~v~~~~~d~~~l-~-~~~~~DlV 182 (428)
.++++|||||||+|.++..+++. +..+|+++|++ .+++.|++++.. .+ + ..+++++.+|+.+. + .+++||+|
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence 45689999999999999999987 45699999999 999999988754 22 2 45799999998874 2 24789999
Q ss_pred EEecchhh---hcchh-hHHHHHHHHhcccccCeEEEccC
Q 014247 183 ISEWMGYM---LLYES-MLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 183 vs~~~~~~---l~~~~-~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
+++..... ..... ....+++.+.++|+|||++++..
T Consensus 156 i~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 195 (314)
T 1uir_A 156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (314)
T ss_dssp EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred EECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEc
Confidence 99763221 00011 14788999999999999999753
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.20 E-value=5.5e-11 Score=120.57 Aligned_cols=109 Identities=17% Similarity=0.145 Sum_probs=86.9
Q ss_pred CCCEEEEEcCCCcHHHHHHHHc--CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc--CCCceeEEEEec
Q 014247 112 EGKVVVDVGCGTGILSIFCAQA--GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE--IDEEVDVIISEW 186 (428)
Q Consensus 112 ~~~~VLDiGcGtG~ls~~la~~--g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~--~~~~~DlVvs~~ 186 (428)
++.+|||+|||+|..+..+|+. +..+|+|+|++ .+++.++++++..++.+ +.++++|+.+++ .+++||+|+++.
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~n-v~~~~~D~~~~~~~~~~~fD~Il~D~ 195 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISN-VALTHFDGRVFGAAVPEMFDAILLDA 195 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCS-EEEECCCSTTHHHHSTTCEEEEEEEC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCc-EEEEeCCHHHhhhhccccCCEEEECC
Confidence 8899999999999999999986 23589999999 99999999999988864 999999998865 357899999864
Q ss_pred chh---hhcch----------------hhHHHHHHHHhcccccCeEEEccCCee
Q 014247 187 MGY---MLLYE----------------SMLGSVITARDRWLKRGGLILPSYATL 221 (428)
Q Consensus 187 ~~~---~l~~~----------------~~~~~~l~~~~~~LkpgG~lv~~~~~~ 221 (428)
..+ .+... .....+|..+.++|||||+|+.+++++
T Consensus 196 PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~ 249 (479)
T 2frx_A 196 PCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTL 249 (479)
T ss_dssp CCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred CcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccC
Confidence 211 11111 113467899999999999999876543
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=1.4e-10 Score=105.46 Aligned_cols=99 Identities=17% Similarity=0.188 Sum_probs=81.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEEecchh
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWMGY 189 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~~~~~ 189 (428)
.++.+|||||||+|.++..++ +..+|+|+|++ .+++.+++++..++. ...+..+|....+++++||+|++..+.+
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~--~~~~y~a~DId~~~i~~ar~~~~~~g~--~~~~~v~D~~~~~~~~~~DvvLllk~lh 179 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER--GIASVWGCDIHQGLGDVITPFAREKDW--DFTFALQDVLCAPPAEAGDLALIFKLLP 179 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT--TCSEEEEEESBHHHHHHHHHHHHHTTC--EEEEEECCTTTSCCCCBCSEEEEESCHH
T ss_pred CCCCeEEEecCCccHHHHHhc--cCCeEEEEeCCHHHHHHHHHHHHhcCC--CceEEEeecccCCCCCCcchHHHHHHHH
Confidence 567899999999999999887 56699999999 999999999888874 5789999999888889999999876556
Q ss_pred hhcchhhHHHHHHHHhcccccCeEEE
Q 014247 190 MLLYESMLGSVITARDRWLKRGGLIL 215 (428)
Q Consensus 190 ~l~~~~~~~~~l~~~~~~LkpgG~lv 215 (428)
++.+.. ....+ ++...|+++|++|
T Consensus 180 ~LE~q~-~~~~~-~ll~aL~~~~vvV 203 (253)
T 3frh_A 180 LLEREQ-AGSAM-ALLQSLNTPRMAV 203 (253)
T ss_dssp HHHHHS-TTHHH-HHHHHCBCSEEEE
T ss_pred Hhhhhc-hhhHH-HHHHHhcCCCEEE
Confidence 665554 23333 6666899999887
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.19 E-value=4e-11 Score=114.53 Aligned_cols=104 Identities=17% Similarity=0.181 Sum_probs=80.0
Q ss_pred CEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc--C-CCceeEEEEecch
Q 014247 114 KVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE--I-DEEVDVIISEWMG 188 (428)
Q Consensus 114 ~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~--~-~~~~DlVvs~~~~ 188 (428)
.+|||||||+|.++..+++. ...+|++||++ .+++.|++++... ...+++++.+|+.++. . .++||+|+++...
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~-~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~ 169 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIP-RAPRVKIRVDDARMVAESFTPASRDVIIRDVFA 169 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCC-CTTTEEEEESCHHHHHHTCCTTCEEEEEECCST
T ss_pred CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhcccc-CCCceEEEECcHHHHHhhccCCCCCEEEECCCC
Confidence 49999999999999999994 33489999999 9999999886533 2357999999988752 2 3789999997532
Q ss_pred hhhcch-hhHHHHHHHHhcccccCeEEEccC
Q 014247 189 YMLLYE-SMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 189 ~~l~~~-~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
...... ....++++.++++|+|||++++..
T Consensus 170 ~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~ 200 (317)
T 3gjy_A 170 GAITPQNFTTVEFFEHCHRGLAPGGLYVANC 200 (317)
T ss_dssp TSCCCGGGSBHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccchhhhHHHHHHHHHHhcCCCcEEEEEe
Confidence 211111 113688999999999999998643
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.2e-10 Score=117.53 Aligned_cols=114 Identities=18% Similarity=0.180 Sum_probs=89.3
Q ss_pred hccCCCCCCEEEEEcCCCcHHHHHHHHc--CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc--CC-Cce
Q 014247 106 QNQSFIEGKVVVDVGCGTGILSIFCAQA--GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE--ID-EEV 179 (428)
Q Consensus 106 ~~~~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~--~~-~~~ 179 (428)
..+...++.+|||+|||+|..+..+++. +..+|+|+|++ .++..++++++..++.+ ++++++|+.+++ ++ ++|
T Consensus 253 ~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~-v~~~~~D~~~~~~~~~~~~f 331 (450)
T 2yxl_A 253 IVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKI-VKPLVKDARKAPEIIGEEVA 331 (450)
T ss_dssp HHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCS-EEEECSCTTCCSSSSCSSCE
T ss_pred HhcCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCc-EEEEEcChhhcchhhccCCC
Confidence 3445678899999999999999999985 22599999999 99999999999988864 999999998876 34 689
Q ss_pred eEEEEecchh---hhcchhh----------------HHHHHHHHhcccccCeEEEccCCe
Q 014247 180 DVIISEWMGY---MLLYESM----------------LGSVITARDRWLKRGGLILPSYAT 220 (428)
Q Consensus 180 DlVvs~~~~~---~l~~~~~----------------~~~~l~~~~~~LkpgG~lv~~~~~ 220 (428)
|+|+++...+ .+...++ ...++..+.++|||||+++..+++
T Consensus 332 D~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs 391 (450)
T 2yxl_A 332 DKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCS 391 (450)
T ss_dssp EEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESC
T ss_pred CEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 9999854211 1111111 157899999999999999976554
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=4.5e-11 Score=116.76 Aligned_cols=106 Identities=16% Similarity=0.197 Sum_probs=79.2
Q ss_pred HHHHHHHHhccCCCCCCEEEEEcCC------CcHHHHHHHHc--CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEc
Q 014247 98 ETYRAAIMQNQSFIEGKVVVDVGCG------TGILSIFCAQA--GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHG 168 (428)
Q Consensus 98 ~~~~~~i~~~~~~~~~~~VLDiGcG------tG~ls~~la~~--g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~ 168 (428)
..|.+.+.... .++.+||||||| +|..++.+++. ...+|+|+|+| .|. . ...+++++++
T Consensus 204 ~~Ye~lL~~l~--~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~--------~--~~~rI~fv~G 271 (419)
T 3sso_A 204 PHYDRHFRDYR--NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH--------V--DELRIRTIQG 271 (419)
T ss_dssp HHHHHHHGGGT--TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG--------G--CBTTEEEEEC
T ss_pred HHHHHHHHhhc--CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh--------h--cCCCcEEEEe
Confidence 44555444432 457899999999 77777666654 34599999999 762 1 2346999999
Q ss_pred ccccccCC-------CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCC
Q 014247 169 RVEDVEID-------EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYA 219 (428)
Q Consensus 169 d~~~l~~~-------~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 219 (428)
|+.++++. ++||+|+++. .++..+...+++++.++|||||++++.+.
T Consensus 272 Da~dlpf~~~l~~~d~sFDlVisdg----sH~~~d~~~aL~el~rvLKPGGvlVi~Dl 325 (419)
T 3sso_A 272 DQNDAEFLDRIARRYGPFDIVIDDG----SHINAHVRTSFAALFPHVRPGGLYVIEDM 325 (419)
T ss_dssp CTTCHHHHHHHHHHHCCEEEEEECS----CCCHHHHHHHHHHHGGGEEEEEEEEEECG
T ss_pred cccccchhhhhhcccCCccEEEECC----cccchhHHHHHHHHHHhcCCCeEEEEEec
Confidence 99987543 7899999864 23456688999999999999999997653
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=5.6e-11 Score=116.44 Aligned_cols=142 Identities=14% Similarity=0.142 Sum_probs=98.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEeChHHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEEecchh
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAG-AKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWMGY 189 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g-~~~V~giD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~~~~~ 189 (428)
.++.+|||||||+|.++..+++.. ..+++++|++.+++.|++ . .+++++.+|+.+ +.+ .||+|++..
T Consensus 192 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~-~~v~~~~~d~~~-~~~-~~D~v~~~~--- 259 (358)
T 1zg3_A 192 EGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTG------N-ENLNFVGGDMFK-SIP-SADAVLLKW--- 259 (358)
T ss_dssp HTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECHHHHSSCCC------C-SSEEEEECCTTT-CCC-CCSEEEEES---
T ss_pred cCCCEEEEECCCcCHHHHHHHHHCCCCeEEEeccHHHHhhccc------C-CCcEEEeCccCC-CCC-CceEEEEcc---
Confidence 356899999999999999999873 338999999877665543 2 249999999987 555 599999876
Q ss_pred hhcchhhHH--HHHHHHhccccc---CeEEEccCCeeeEeecCCcc----chhhhhhh--h--hccCCCCcchhHHHHHh
Q 014247 190 MLLYESMLG--SVITARDRWLKR---GGLILPSYATLYMAPVTHPD----RYSESIDF--W--RNVYGIDMSAMMPLAKQ 256 (428)
Q Consensus 190 ~l~~~~~~~--~~l~~~~~~Lkp---gG~lv~~~~~~~~~~~~~~~----~~~~~~~~--~--~~~~~~~~~~l~~~l~~ 256 (428)
++++..+.. .+++++.+.|+| ||++++..... +-.... .......+ + ......+..++..++++
T Consensus 260 vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~---~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~ 336 (358)
T 1zg3_A 260 VLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISI---DETSDDRGLTELQLDYDLVMLTMFLGKERTKQEWEKLIYD 336 (358)
T ss_dssp CGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEE---CTTCSCHHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEecc---CCCCccchhhhHHHhhCHHHhccCCCCCCCHHHHHHHHHH
Confidence 555555544 999999999999 99998765432 111100 00111111 1 11122367889999999
Q ss_pred cCCCCceEEee
Q 014247 257 CAFEEPSVETI 267 (428)
Q Consensus 257 ~Gf~~~~~~~~ 267 (428)
+||+...+...
T Consensus 337 aGf~~~~~~~~ 347 (358)
T 1zg3_A 337 AGFSSYKITPI 347 (358)
T ss_dssp TTCCEEEEEEE
T ss_pred cCCCeeEEEec
Confidence 99998776553
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.17 E-value=1e-10 Score=111.74 Aligned_cols=85 Identities=16% Similarity=0.292 Sum_probs=67.4
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCc
Q 014247 100 YRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEE 178 (428)
Q Consensus 100 ~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~ 178 (428)
+.+.+.+.+...++.+|||||||+|.++..+++.+. +|+|+|++ .+++.|++++..+++ ++++++++|+.+++. .+
T Consensus 30 i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~~~-~v~~vDi~~~~~~~a~~~~~~~~~-~~v~~~~~D~~~~~~-~~ 106 (299)
T 2h1r_A 30 ILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPLAK-KVITIDIDSRMISEVKKRCLYEGY-NNLEVYEGDAIKTVF-PK 106 (299)
T ss_dssp HHHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTTSS-EEEEECSCHHHHHHHHHHHHHTTC-CCEEC----CCSSCC-CC
T ss_pred HHHHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCC-CceEEEECchhhCCc-cc
Confidence 344455555667889999999999999999999854 99999999 999999999887776 469999999988766 48
Q ss_pred eeEEEEecc
Q 014247 179 VDVIISEWM 187 (428)
Q Consensus 179 ~DlVvs~~~ 187 (428)
||+|+++..
T Consensus 107 ~D~Vv~n~p 115 (299)
T 2h1r_A 107 FDVCTANIP 115 (299)
T ss_dssp CSEEEEECC
T ss_pred CCEEEEcCC
Confidence 999999863
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.17 E-value=8.2e-11 Score=105.19 Aligned_cols=96 Identities=15% Similarity=0.307 Sum_probs=71.0
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHc-C--CCeEEEEeChHHHHHHHHHHHHCCCCCcEEEEEccccccc------------
Q 014247 110 FIEGKVVVDVGCGTGILSIFCAQA-G--AKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDVE------------ 174 (428)
Q Consensus 110 ~~~~~~VLDiGcGtG~ls~~la~~-g--~~~V~giD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~------------ 174 (428)
..++.+|||+|||+|.++..+++. + ..+|+|+|++++. .. .+++++++|+.+..
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~----------~~-~~v~~~~~d~~~~~~~~~~~~~~i~~ 88 (201)
T 2plw_A 20 LKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD----------PI-PNVYFIQGEIGKDNMNNIKNINYIDN 88 (201)
T ss_dssp CCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC----------CC-TTCEEEECCTTTTSSCCC--------
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC----------CC-CCceEEEccccchhhhhhcccccccc
Confidence 467889999999999999999986 3 3589999999531 12 35899999998765
Q ss_pred -------------CC-CceeEEEEecchhhhc-chhh-------HHHHHHHHhcccccCeEEEc
Q 014247 175 -------------ID-EEVDVIISEWMGYMLL-YESM-------LGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 175 -------------~~-~~~DlVvs~~~~~~l~-~~~~-------~~~~l~~~~~~LkpgG~lv~ 216 (428)
++ ++||+|+++...+... +..+ ...+++.+.++|+|||.+++
T Consensus 89 ~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~ 152 (201)
T 2plw_A 89 MNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIV 152 (201)
T ss_dssp ---CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred ccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEE
Confidence 33 6899999975221110 0111 23478889999999999986
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.16 E-value=1.8e-11 Score=107.26 Aligned_cols=114 Identities=13% Similarity=0.085 Sum_probs=86.7
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC----CCceeEEE
Q 014247 109 SFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI----DEEVDVII 183 (428)
Q Consensus 109 ~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~----~~~~DlVv 183 (428)
...+|.+|||||||. +++|+| .|++.|+++... +++++++|+.+++. +++||+|+
T Consensus 9 g~~~g~~vL~~~~g~---------------v~vD~s~~ml~~a~~~~~~-----~~~~~~~d~~~~~~~~~~~~~fD~V~ 68 (176)
T 2ld4_A 9 GISAGQFVAVVWDKS---------------SPVEALKGLVDKLQALTGN-----EGRVSVENIKQLLQSAHKESSFDIIL 68 (176)
T ss_dssp TCCTTSEEEEEECTT---------------SCHHHHHHHHHHHHHHTTT-----TSEEEEEEGGGGGGGCCCSSCEEEEE
T ss_pred CCCCCCEEEEecCCc---------------eeeeCCHHHHHHHHHhccc-----CcEEEEechhcCccccCCCCCEeEEE
Confidence 457899999999996 239999 999999887532 38999999999876 47899999
Q ss_pred Eecchhhhcch-hhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhhccCCCCcchhHHHHHhcCC
Q 014247 184 SEWMGYMLLYE-SMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAMMPLAKQCAF 259 (428)
Q Consensus 184 s~~~~~~l~~~-~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf 259 (428)
+.. .+++. .++..++++++++|||||++++..+. .... ....+......+..+++++||
T Consensus 69 ~~~---~l~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~------~~~~--------~~~~~~~~~~~~~~~l~~aGf 128 (176)
T 2ld4_A 69 SGL---VPGSTTLHSAEILAEIARILRPGGCLFLKEPV------ETAV--------DNNSKVKTASKLCSALTLSGL 128 (176)
T ss_dssp ECC---STTCCCCCCHHHHHHHHHHEEEEEEEEEEEEE------ESSS--------CSSSSSCCHHHHHHHHHHTTC
T ss_pred ECC---hhhhcccCHHHHHHHHHHHCCCCEEEEEEccc------cccc--------ccccccCCHHHHHHHHHHCCC
Confidence 865 55555 66899999999999999999984221 0000 001233467789999999999
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=2.3e-10 Score=114.46 Aligned_cols=108 Identities=19% Similarity=0.244 Sum_probs=83.7
Q ss_pred HHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC
Q 014247 98 ETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID 176 (428)
Q Consensus 98 ~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~ 176 (428)
+.+.+.+.+ ..++.+|||+|||+|.++..+|+.+ .+|+|+|++ .+++.|++++..+++. ++|+++|+.++..
T Consensus 279 e~l~~~~~~---~~~~~~VLDlgcG~G~~sl~la~~~-~~V~gvD~s~~ai~~A~~n~~~ngl~--v~~~~~d~~~~~~- 351 (425)
T 2jjq_A 279 VNLVRKVSE---LVEGEKILDMYSGVGTFGIYLAKRG-FNVKGFDSNEFAIEMARRNVEINNVD--AEFEVASDREVSV- 351 (425)
T ss_dssp HHHHHHHHH---HCCSSEEEEETCTTTHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHTCC--EEEEECCTTTCCC-
T ss_pred HHHHHHhhc---cCCCCEEEEeeccchHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHcCCc--EEEEECChHHcCc-
Confidence 344444444 3677899999999999999999974 499999999 9999999999998885 9999999998754
Q ss_pred CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccC
Q 014247 177 EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 177 ~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
.+||+|++++.-. .....+++.+. .|+|+|+++++.
T Consensus 352 ~~fD~Vv~dPPr~-----g~~~~~~~~l~-~l~p~givyvsc 387 (425)
T 2jjq_A 352 KGFDTVIVDPPRA-----GLHPRLVKRLN-REKPGVIVYVSC 387 (425)
T ss_dssp TTCSEEEECCCTT-----CSCHHHHHHHH-HHCCSEEEEEES
T ss_pred cCCCEEEEcCCcc-----chHHHHHHHHH-hcCCCcEEEEEC
Confidence 3899999976321 11234555554 489999998753
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=8.5e-11 Score=107.81 Aligned_cols=112 Identities=13% Similarity=0.099 Sum_probs=88.2
Q ss_pred HHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC
Q 014247 98 ETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI 175 (428)
Q Consensus 98 ~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~ 175 (428)
+.+...+...+ .+..+|||||||+|.++..++.. +..+|+++|++ .+++.+++++..+++. .++...|...-++
T Consensus 120 D~fY~~i~~~i--~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~--~~~~v~D~~~~~p 195 (281)
T 3lcv_B 120 DEFYRELFRHL--PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVP--HRTNVADLLEDRL 195 (281)
T ss_dssp HHHHHHHGGGS--CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCC--EEEEECCTTTSCC
T ss_pred HHHHHHHHhcc--CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCC--ceEEEeeecccCC
Confidence 34445555554 44679999999999999999887 66699999999 9999999999999885 6888889887777
Q ss_pred CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEE
Q 014247 176 DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLIL 215 (428)
Q Consensus 176 ~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv 215 (428)
+++||++++..+.+++..+. ....+ ++...|+++|++|
T Consensus 196 ~~~~DvaL~lkti~~Le~q~-kg~g~-~ll~aL~~~~vvV 233 (281)
T 3lcv_B 196 DEPADVTLLLKTLPCLETQQ-RGSGW-EVIDIVNSPNIVV 233 (281)
T ss_dssp CSCCSEEEETTCHHHHHHHS-TTHHH-HHHHHSSCSEEEE
T ss_pred CCCcchHHHHHHHHHhhhhh-hHHHH-HHHHHhCCCCEEE
Confidence 79999999876544554333 22344 6788899999988
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=1.4e-10 Score=108.18 Aligned_cols=121 Identities=12% Similarity=0.110 Sum_probs=82.6
Q ss_pred HHHHHHHHHhccC-CCCCCEEEEEcCCC---cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccc
Q 014247 97 TETYRAAIMQNQS-FIEGKVVVDVGCGT---GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRV 170 (428)
Q Consensus 97 ~~~~~~~i~~~~~-~~~~~~VLDiGcGt---G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~ 170 (428)
++.|...+.+.+. ......|||||||+ |.+...+.+. ...+|+++|.| .|+..|++++...+ ..+++++++|+
T Consensus 62 nr~fl~rav~~l~~~~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~-~~~~~~v~aD~ 140 (277)
T 3giw_A 62 NRDWMNRAVAHLAKEAGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTP-EGRTAYVEADM 140 (277)
T ss_dssp HHHHHHHHHHHHHHTSCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCS-SSEEEEEECCT
T ss_pred HHHHHHHHHHHhccccCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCC-CCcEEEEEecc
Confidence 3455555555443 23346999999997 3344333332 34499999999 99999998876543 24699999999
Q ss_pred ccccC-------CCcee-----EEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccC
Q 014247 171 EDVEI-------DEEVD-----VIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 171 ~~l~~-------~~~~D-----lVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
.++.. .+.|| .|+++.+.+++....++..+++++.+.|+|||.|+++.
T Consensus 141 ~~~~~~l~~~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~ 200 (277)
T 3giw_A 141 LDPASILDAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSI 200 (277)
T ss_dssp TCHHHHHTCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEE
T ss_pred cChhhhhcccccccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEe
Confidence 88521 13354 56676644444333337889999999999999999764
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=3.7e-10 Score=113.45 Aligned_cols=113 Identities=17% Similarity=0.194 Sum_probs=87.2
Q ss_pred hHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccc-
Q 014247 96 RTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDV- 173 (428)
Q Consensus 96 r~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l- 173 (428)
.++.+.+.+.+.+...++.+|||+|||+|.++..+++. ..+|+|+|+| .+++.|++++..+++. +++|+++|+.+.
T Consensus 270 ~~e~l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~-~~~V~gvD~s~~al~~A~~n~~~~~~~-~v~f~~~d~~~~l 347 (433)
T 1uwv_A 270 VNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARLNGLQ-NVTFYHENLEEDV 347 (433)
T ss_dssp HHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCTTSCC
T ss_pred HHHHHHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEECCHHHHh
Confidence 35556666666666677889999999999999999998 5599999999 9999999999999887 699999999873
Q ss_pred ---cC-CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 174 ---EI-DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 174 ---~~-~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
+. .++||+|++++.-..+ ..+++.+.+ ++|+++++++
T Consensus 348 ~~~~~~~~~fD~Vv~dPPr~g~------~~~~~~l~~-~~p~~ivyvs 388 (433)
T 1uwv_A 348 TKQPWAKNGFDKVLLDPARAGA------AGVMQQIIK-LEPIRIVYVS 388 (433)
T ss_dssp SSSGGGTTCCSEEEECCCTTCC------HHHHHHHHH-HCCSEEEEEE
T ss_pred hhhhhhcCCCCEEEECCCCccH------HHHHHHHHh-cCCCeEEEEE
Confidence 22 2589999998632211 134444433 7898888754
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=1.1e-10 Score=115.12 Aligned_cols=101 Identities=20% Similarity=0.112 Sum_probs=84.5
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc--CCCeEEEEeCh-HHHHHHHHHHHHCCCCCc-EEEEEccccccc---CCCceeEEE
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQA--GAKRVYAVDAS-DIAVQANEVVKANNLTDK-VIVLHGRVEDVE---IDEEVDVII 183 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~--g~~~V~giD~s-~~~~~a~~~~~~~~~~~~-v~~~~~d~~~l~---~~~~~DlVv 183 (428)
.++.+|||++||+|.+++.+++. |+++|+++|++ ..++.++++++.|++.++ ++++++|+.++. ..++||+|+
T Consensus 51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~ 130 (392)
T 3axs_A 51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVD 130 (392)
T ss_dssp CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEE
T ss_pred CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEE
Confidence 46789999999999999999984 66799999999 999999999999999877 999999987753 246899999
Q ss_pred EecchhhhcchhhHHHHHHHHhcccccCeEEEccC
Q 014247 184 SEWMGYMLLYESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 184 s~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
.++.+ ....++..+.++|++||+++.+.
T Consensus 131 lDP~g-------~~~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 131 LDPFG-------TPVPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp ECCSS-------CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred ECCCc-------CHHHHHHHHHHHhCCCCEEEEEe
Confidence 98721 13457788888899999887643
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.11 E-value=1.3e-10 Score=103.38 Aligned_cols=97 Identities=25% Similarity=0.272 Sum_probs=71.1
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHc-CC---------CeEEEEeChHHHHHHHHHHHHCCCCCcEEEE-Eccccccc----
Q 014247 110 FIEGKVVVDVGCGTGILSIFCAQA-GA---------KRVYAVDASDIAVQANEVVKANNLTDKVIVL-HGRVEDVE---- 174 (428)
Q Consensus 110 ~~~~~~VLDiGcGtG~ls~~la~~-g~---------~~V~giD~s~~~~~a~~~~~~~~~~~~v~~~-~~d~~~l~---- 174 (428)
..++.+|||+|||+|.++..+++. +. .+|+|+|++++. .+ .+++++ .+|+.+..
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~----------~~-~~~~~~~~~d~~~~~~~~~ 88 (196)
T 2nyu_A 20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF----------PL-EGATFLCPADVTDPRTSQR 88 (196)
T ss_dssp CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC----------CC-TTCEEECSCCTTSHHHHHH
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc----------cC-CCCeEEEeccCCCHHHHHH
Confidence 467899999999999999999987 54 689999999531 12 348888 88876643
Q ss_pred ----CC-CceeEEEEecchhh-hcchhhH-------HHHHHHHhcccccCeEEEcc
Q 014247 175 ----ID-EEVDVIISEWMGYM-LLYESML-------GSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 175 ----~~-~~~DlVvs~~~~~~-l~~~~~~-------~~~l~~~~~~LkpgG~lv~~ 217 (428)
++ ++||+|+++...+. ..+..+. ..+++++.++|+|||.+++.
T Consensus 89 ~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~ 144 (196)
T 2nyu_A 89 ILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCK 144 (196)
T ss_dssp HHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 22 58999999642111 1121222 57899999999999999864
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=99.10 E-value=6.5e-11 Score=110.83 Aligned_cols=96 Identities=16% Similarity=-0.023 Sum_probs=77.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHH--CCC-CCcEEEEEcccccccCCCceeEEEEec
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKA--NNL-TDKVIVLHGRVEDVEIDEEVDVIISEW 186 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~--~~~-~~~v~~~~~d~~~l~~~~~~DlVvs~~ 186 (428)
..+++|||||||+|.++..+++.+ .+|+++|++ .+++.|++++.. +++ ..+++++.+|..+.. ++||+|++..
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~--~~fD~Ii~d~ 147 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKYD-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI--KKYDLIFCLQ 147 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTSS-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC--CCEEEEEESS
T ss_pred CCCCEEEEEeCCcCHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH--hhCCEEEECC
Confidence 456899999999999999998886 899999999 999988876432 112 347999999998865 7899999863
Q ss_pred chhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 187 MGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 187 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
.++..+++.+.+.|+|||+++..
T Consensus 148 --------~dp~~~~~~~~~~L~pgG~lv~~ 170 (262)
T 2cmg_A 148 --------EPDIHRIDGLKRMLKEDGVFISV 170 (262)
T ss_dssp --------CCCHHHHHHHHTTEEEEEEEEEE
T ss_pred --------CChHHHHHHHHHhcCCCcEEEEE
Confidence 12334899999999999999864
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=99.10 E-value=3.1e-10 Score=113.91 Aligned_cols=115 Identities=16% Similarity=0.151 Sum_probs=89.1
Q ss_pred HhccCCCCCCEEEEEcCCCcHHHHHHHHcCC-CeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc--CC-Cce
Q 014247 105 MQNQSFIEGKVVVDVGCGTGILSIFCAQAGA-KRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE--ID-EEV 179 (428)
Q Consensus 105 ~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~-~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~--~~-~~~ 179 (428)
...+...++.+|||+|||+|..+..+++.+. .+|+|+|++ .++..+++++..+++. ++++++|+.+++ ++ ++|
T Consensus 239 ~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~--~~~~~~D~~~~~~~~~~~~f 316 (429)
T 1sqg_A 239 MTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMK--ATVKQGDGRYPSQWCGEQQF 316 (429)
T ss_dssp HHHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCC--CEEEECCTTCTHHHHTTCCE
T ss_pred HHHcCCCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCC--eEEEeCchhhchhhcccCCC
Confidence 3344557889999999999999999998743 599999999 9999999999998873 789999998765 23 689
Q ss_pred eEEEEecchh---hhcchhh----------------HHHHHHHHhcccccCeEEEccCCee
Q 014247 180 DVIISEWMGY---MLLYESM----------------LGSVITARDRWLKRGGLILPSYATL 221 (428)
Q Consensus 180 DlVvs~~~~~---~l~~~~~----------------~~~~l~~~~~~LkpgG~lv~~~~~~ 221 (428)
|+|+++...+ .+...++ ...++..+.++|||||+++.+++++
T Consensus 317 D~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~ 377 (429)
T 1sqg_A 317 DRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV 377 (429)
T ss_dssp EEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred CEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 9999864211 1111111 1578999999999999999876543
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=6.4e-10 Score=109.43 Aligned_cols=98 Identities=22% Similarity=0.193 Sum_probs=82.2
Q ss_pred CCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHC---------------CCCCcEEEEEccccccc
Q 014247 112 EGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKAN---------------NLTDKVIVLHGRVEDVE 174 (428)
Q Consensus 112 ~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~---------------~~~~~v~~~~~d~~~l~ 174 (428)
++.+|||+|||+|.+++.+++. +..+|+++|++ ..++.++++++.+ ++.+ ++++++|+.++.
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~-i~v~~~Da~~~~ 125 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKT-IVINHDDANRLM 125 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSE-EEEEESCHHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCc-eEEEcCcHHHHH
Confidence 6789999999999999999987 66689999999 9999999999998 7765 999999987753
Q ss_pred C--CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 175 I--DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 175 ~--~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
. .++||+|+.++.+ ....++..+.+.|++||+++++
T Consensus 126 ~~~~~~fD~I~lDP~~-------~~~~~l~~a~~~lk~gG~l~vt 163 (378)
T 2dul_A 126 AERHRYFHFIDLDPFG-------SPMEFLDTALRSAKRRGILGVT 163 (378)
T ss_dssp HHSTTCEEEEEECCSS-------CCHHHHHHHHHHEEEEEEEEEE
T ss_pred HhccCCCCEEEeCCCC-------CHHHHHHHHHHhcCCCCEEEEE
Confidence 2 3689999987632 1356778888899999988764
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.02 E-value=5.3e-10 Score=109.98 Aligned_cols=108 Identities=15% Similarity=0.136 Sum_probs=80.2
Q ss_pred HHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC-
Q 014247 98 ETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI- 175 (428)
Q Consensus 98 ~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~- 175 (428)
+.+...+.+.+.. .+.+|||+|||+|.+++.+|+. +.+|+|+|++ .+++.|+++++.+++. +++++++|+.++..
T Consensus 200 ~~l~~~~~~~~~~-~~~~vLDl~cG~G~~~l~la~~-~~~V~gvd~~~~ai~~a~~n~~~ng~~-~v~~~~~d~~~~~~~ 276 (369)
T 3bt7_A 200 IQMLEWALDVTKG-SKGDLLELYCGNGNFSLALARN-FDRVLATEIAKPSVAAAQYNIAANHID-NVQIIRMAAEEFTQA 276 (369)
T ss_dssp HHHHHHHHHHTTT-CCSEEEEESCTTSHHHHHHGGG-SSEEEEECCCHHHHHHHHHHHHHTTCC-SEEEECCCSHHHHHH
T ss_pred HHHHHHHHHHhhc-CCCEEEEccCCCCHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCCC-ceEEEECCHHHHHHH
Confidence 4555556555543 3678999999999999999985 6699999999 9999999999999985 69999999877521
Q ss_pred -C---------------CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 176 -D---------------EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 176 -~---------------~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
. .+||+|+.++.... +...+.+.|+++|.++..
T Consensus 277 ~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~g---------~~~~~~~~l~~~g~ivyv 325 (369)
T 3bt7_A 277 MNGVREFNRLQGIDLKSYQCETIFVDPPRSG---------LDSETEKMVQAYPRILYI 325 (369)
T ss_dssp HSSCCCCTTGGGSCGGGCCEEEEEECCCTTC---------CCHHHHHHHTTSSEEEEE
T ss_pred HhhccccccccccccccCCCCEEEECcCccc---------cHHHHHHHHhCCCEEEEE
Confidence 1 27999998763221 112334455678877643
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=7.3e-10 Score=104.78 Aligned_cols=105 Identities=18% Similarity=0.148 Sum_probs=72.6
Q ss_pred HHHHHHHH-hccCCCCCCEEEEEcCCC------cHHHHHHHH-cC-CCeEEEEeChHHHHHHHHHHHHCCCCCcEEE-EE
Q 014247 98 ETYRAAIM-QNQSFIEGKVVVDVGCGT------GILSIFCAQ-AG-AKRVYAVDASDIAVQANEVVKANNLTDKVIV-LH 167 (428)
Q Consensus 98 ~~~~~~i~-~~~~~~~~~~VLDiGcGt------G~ls~~la~-~g-~~~V~giD~s~~~~~a~~~~~~~~~~~~v~~-~~ 167 (428)
..+.+.+. ..+...++.+|||+|||+ |. ..+++ .+ ..+|+|+|+++. + .++++ ++
T Consensus 48 ~~l~~~l~~~~l~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~------------v-~~v~~~i~ 112 (290)
T 2xyq_A 48 TQLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF------------V-SDADSTLI 112 (290)
T ss_dssp HHHHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC------------B-CSSSEEEE
T ss_pred HHHHHHHHHhhcCCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC------------C-CCCEEEEE
Confidence 33444442 234567889999999954 66 33444 34 359999999933 1 24888 99
Q ss_pred cccccccCCCceeEEEEecchhh-----hc---chhhHHHHHHHHhcccccCeEEEcc
Q 014247 168 GRVEDVEIDEEVDVIISEWMGYM-----LL---YESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 168 ~d~~~l~~~~~~DlVvs~~~~~~-----l~---~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
+|+.+++++++||+|+|+..... +. .......+++.+.++|||||.+++.
T Consensus 113 gD~~~~~~~~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~ 170 (290)
T 2xyq_A 113 GDCATVHTANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVK 170 (290)
T ss_dssp SCGGGCCCSSCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccccCCccCcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 99999877789999999742111 01 1233568899999999999999863
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.01 E-value=2.9e-09 Score=101.93 Aligned_cols=113 Identities=12% Similarity=0.045 Sum_probs=84.4
Q ss_pred ccCCCCCCEEEEEcCCCcHHHHHHHHc--CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC----Cce
Q 014247 107 NQSFIEGKVVVDVGCGTGILSIFCAQA--GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID----EEV 179 (428)
Q Consensus 107 ~~~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~----~~~ 179 (428)
.+...++.+|||+|||+|..+..+++. +..+|+|+|++ .+++.++++++..++. +++++++|+.++... .+|
T Consensus 97 ~l~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~~~f 175 (309)
T 2b9e_A 97 LLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVS-CCELAEEDFLAVSPSDPRYHEV 175 (309)
T ss_dssp HHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCGGGSCTTCGGGTTE
T ss_pred HhCCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCChHhcCccccccCCC
Confidence 334578999999999999999999985 44699999999 9999999999999886 499999999887542 579
Q ss_pred eEEEEecc----hhhhcc----------hhh-------HHHHHHHHhcccccCeEEEccCCee
Q 014247 180 DVIISEWM----GYMLLY----------ESM-------LGSVITARDRWLKRGGLILPSYATL 221 (428)
Q Consensus 180 DlVvs~~~----~~~l~~----------~~~-------~~~~l~~~~~~LkpgG~lv~~~~~~ 221 (428)
|+|+++.. +.+-.+ ..+ ...+|..+.++|+ ||+|+.+++++
T Consensus 176 D~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~ 237 (309)
T 2b9e_A 176 HYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSL 237 (309)
T ss_dssp EEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCC
T ss_pred CEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCC
Confidence 99998542 111110 011 1346777778887 99988765543
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.01 E-value=7.2e-10 Score=107.97 Aligned_cols=106 Identities=21% Similarity=0.134 Sum_probs=81.7
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCC------CeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEE
Q 014247 110 FIEGKVVVDVGCGTGILSIFCAQAGA------KRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVI 182 (428)
Q Consensus 110 ~~~~~~VLDiGcGtG~ls~~la~~g~------~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlV 182 (428)
..++.+|||+|||+|.++..+++... .+|+|+|++ .++..|+.++..+++ ++.++++|.......++||+|
T Consensus 128 ~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~--~~~i~~~D~l~~~~~~~fD~I 205 (344)
T 2f8l_A 128 KKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ--KMTLLHQDGLANLLVDPVDVV 205 (344)
T ss_dssp TCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC--CCEEEESCTTSCCCCCCEEEE
T ss_pred CCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC--CceEEECCCCCccccCCccEE
Confidence 34678999999999999998887631 589999999 999999999887777 489999998765445789999
Q ss_pred EEecchhhhcch--------------hhH-HHHHHHHhcccccCeEEEcc
Q 014247 183 ISEWMGYMLLYE--------------SML-GSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 183 vs~~~~~~l~~~--------------~~~-~~~l~~~~~~LkpgG~lv~~ 217 (428)
++++........ .+. ..++..+.+.|+|||++++.
T Consensus 206 i~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v 255 (344)
T 2f8l_A 206 ISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFL 255 (344)
T ss_dssp EEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEE
T ss_pred EECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEE
Confidence 999742121110 011 25788899999999988753
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=99.00 E-value=2e-09 Score=99.68 Aligned_cols=83 Identities=17% Similarity=0.246 Sum_probs=67.5
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC-
Q 014247 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID- 176 (428)
Q Consensus 99 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~- 176 (428)
.+.+.+.+.+...++.+|||||||+|.++..+++.+ .+|+|+|++ .++..+++++... ++++++++|+.+++++
T Consensus 17 ~~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~---~~v~~~~~D~~~~~~~~ 92 (244)
T 1qam_A 17 HNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKTTENKLVDH---DNFQVLNKDILQFKFPK 92 (244)
T ss_dssp HHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEECSCHHHHHHHHHHTTTC---CSEEEECCCGGGCCCCS
T ss_pred HHHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHcC-CeEEEEECCHHHHHHHHHhhccC---CCeEEEEChHHhCCccc
Confidence 455667777777788999999999999999999987 599999999 9999998876432 4699999999998765
Q ss_pred -CceeEEEEec
Q 014247 177 -EEVDVIISEW 186 (428)
Q Consensus 177 -~~~DlVvs~~ 186 (428)
..| .|++++
T Consensus 93 ~~~~-~vv~nl 102 (244)
T 1qam_A 93 NQSY-KIFGNI 102 (244)
T ss_dssp SCCC-EEEEEC
T ss_pred CCCe-EEEEeC
Confidence 345 566664
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=6.8e-10 Score=110.98 Aligned_cols=109 Identities=17% Similarity=0.118 Sum_probs=80.7
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc--CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC
Q 014247 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA--GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI 175 (428)
Q Consensus 99 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~ 175 (428)
...+.+.+.+...++.+|||+|||+|.++..+++. ...+|+|+|++ .+++.| .++.++++|+.+...
T Consensus 26 ~l~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a----------~~~~~~~~D~~~~~~ 95 (421)
T 2ih2_A 26 EVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP----------PWAEGILADFLLWEP 95 (421)
T ss_dssp HHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC----------TTEEEEESCGGGCCC
T ss_pred HHHHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC----------CCCcEEeCChhhcCc
Confidence 34555556555456779999999999999999985 34599999999 777655 359999999998766
Q ss_pred CCceeEEEEecchhhhcc---------hh-----------------hHHHHHHHHhcccccCeEEEcc
Q 014247 176 DEEVDVIISEWMGYMLLY---------ES-----------------MLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 176 ~~~~DlVvs~~~~~~l~~---------~~-----------------~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
.++||+|++++....... .. ....+++.+.++|+|||.+++.
T Consensus 96 ~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i 163 (421)
T 2ih2_A 96 GEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFV 163 (421)
T ss_dssp SSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEE
Confidence 689999999863211111 11 1236788899999999988753
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=1.5e-09 Score=103.04 Aligned_cols=84 Identities=18% Similarity=0.433 Sum_probs=70.8
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC-
Q 014247 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID- 176 (428)
Q Consensus 99 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~- 176 (428)
.+.+.|.+.+...++.+|||||||+|.++..+++.+ .+|+|+|++ .++..+++++... ++++++++|+.+++++
T Consensus 37 ~i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~~-~~V~aVEid~~li~~a~~~~~~~---~~v~vi~gD~l~~~~~~ 112 (295)
T 3gru_A 37 NFVNKAVESANLTKDDVVLEIGLGKGILTEELAKNA-KKVYVIEIDKSLEPYANKLKELY---NNIEIIWGDALKVDLNK 112 (295)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCGGGHHHHHHHHHHC---SSEEEEESCTTTSCGGG
T ss_pred HHHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhcC-CEEEEEECCHHHHHHHHHHhccC---CCeEEEECchhhCCccc
Confidence 445566666677788999999999999999999984 599999999 9999999987632 3699999999987765
Q ss_pred CceeEEEEec
Q 014247 177 EEVDVIISEW 186 (428)
Q Consensus 177 ~~~DlVvs~~ 186 (428)
.+||+|+++.
T Consensus 113 ~~fD~Iv~Nl 122 (295)
T 3gru_A 113 LDFNKVVANL 122 (295)
T ss_dssp SCCSEEEEEC
T ss_pred CCccEEEEeC
Confidence 4799999985
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.97 E-value=2.3e-11 Score=112.77 Aligned_cols=113 Identities=16% Similarity=0.195 Sum_probs=80.1
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC--C
Q 014247 101 RAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID--E 177 (428)
Q Consensus 101 ~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~--~ 177 (428)
.+.+.+.+...++.+|||||||+|.++..+++.+ .+|+|+|++ .+++.|++++. ..++++++++|+.+++++ +
T Consensus 18 ~~~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~~-~~v~~id~~~~~~~~a~~~~~---~~~~v~~~~~D~~~~~~~~~~ 93 (245)
T 1yub_A 18 LNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKIS-KQVTSIELDSHLFNLSSEKLK---LNTRVTLIHQDILQFQFPNKQ 93 (245)
T ss_dssp HHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHS-SEEEESSSSCSSSSSSSCTTT---TCSEEEECCSCCTTTTCCCSS
T ss_pred HHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHhC-CeEEEEECCHHHHHHHHHHhc---cCCceEEEECChhhcCcccCC
Confidence 3445555566788899999999999999999987 599999999 99888876654 235799999999998765 5
Q ss_pred ceeEEEEecchhh--------hcchhhHHHHH----HHHhcccccCeEEEccC
Q 014247 178 EVDVIISEWMGYM--------LLYESMLGSVI----TARDRWLKRGGLILPSY 218 (428)
Q Consensus 178 ~~DlVvs~~~~~~--------l~~~~~~~~~l----~~~~~~LkpgG~lv~~~ 218 (428)
+| .|++++..+. +.+......++ +.+.++|+|||.+++..
T Consensus 94 ~f-~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~ 145 (245)
T 1yub_A 94 RY-KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLL 145 (245)
T ss_dssp EE-EEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred Cc-EEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhh
Confidence 78 7777652111 00011111222 55788899998776543
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.96 E-value=9.5e-10 Score=110.88 Aligned_cols=118 Identities=19% Similarity=0.100 Sum_probs=89.7
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc--------------CCCeEEEEeCh-HHHHHHHHHHHHCCCCC-c
Q 014247 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA--------------GAKRVYAVDAS-DIAVQANEVVKANNLTD-K 162 (428)
Q Consensus 99 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~--------------g~~~V~giD~s-~~~~~a~~~~~~~~~~~-~ 162 (428)
...+.+.+.+...++.+|||.|||+|.+...+++. ...+++|+|++ .++..|+.++..+++.. .
T Consensus 158 ~v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~ 237 (445)
T 2okc_A 158 PLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDR 237 (445)
T ss_dssp HHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSC
T ss_pred HHHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCC
Confidence 45556666666677889999999999999888764 12479999999 99999999988888753 5
Q ss_pred EEEEEcccccccCCCceeEEEEecchhhhcchh--------------hHHHHHHHHhcccccCeEEEc
Q 014247 163 VIVLHGRVEDVEIDEEVDVIISEWMGYMLLYES--------------MLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 163 v~~~~~d~~~l~~~~~~DlVvs~~~~~~l~~~~--------------~~~~~l~~~~~~LkpgG~lv~ 216 (428)
+.+.++|....+...+||+|++++......... ....++..+.++|+|||++++
T Consensus 238 ~~i~~gD~l~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~ 305 (445)
T 2okc_A 238 SPIVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAV 305 (445)
T ss_dssp CSEEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEE
T ss_pred CCEeeCCCCCCcccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEE
Confidence 788999987766557999999987422211110 123678889999999998875
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.95 E-value=2.3e-09 Score=99.79 Aligned_cols=83 Identities=10% Similarity=0.200 Sum_probs=67.8
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC-
Q 014247 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID- 176 (428)
Q Consensus 99 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~- 176 (428)
.+.+.|.+.+...++.+|||||||+|.++..+++.+ .+|+|+|++ .+++.+++++.. .++++++++|+.+++++
T Consensus 16 ~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~-~~V~avEid~~~~~~~~~~~~~---~~~v~~i~~D~~~~~~~~ 91 (255)
T 3tqs_A 16 FVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTEC-DNLALVEIDRDLVAFLQKKYNQ---QKNITIYQNDALQFDFSS 91 (255)
T ss_dssp HHHHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTTS-SEEEEEECCHHHHHHHHHHHTT---CTTEEEEESCTTTCCGGG
T ss_pred HHHHHHHHhcCCCCcCEEEEEcccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHhh---CCCcEEEEcchHhCCHHH
Confidence 344556666666788999999999999999999986 599999999 999999988754 24699999999988653
Q ss_pred ----CceeEEEEec
Q 014247 177 ----EEVDVIISEW 186 (428)
Q Consensus 177 ----~~~DlVvs~~ 186 (428)
++|| |++++
T Consensus 92 ~~~~~~~~-vv~Nl 104 (255)
T 3tqs_A 92 VKTDKPLR-VVGNL 104 (255)
T ss_dssp SCCSSCEE-EEEEC
T ss_pred hccCCCeE-EEecC
Confidence 4688 77765
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=3.1e-09 Score=99.64 Aligned_cols=90 Identities=16% Similarity=0.202 Sum_probs=71.5
Q ss_pred hhhhccChhhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEE
Q 014247 87 HEEMIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIV 165 (428)
Q Consensus 87 ~~~~~~d~~r~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~ 165 (428)
.+.++.|. .+.+.|.+.+...++ +|||||||+|.++..+++.+ .+|+|+|++ .+++.+++++.. .++++
T Consensus 26 GQnfL~d~----~i~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~~-~~V~avEid~~~~~~l~~~~~~----~~v~v 95 (271)
T 3fut_A 26 GQNFLVSE----AHLRRIVEAARPFTG-PVFEVGPGLGALTRALLEAG-AEVTAIEKDLRLRPVLEETLSG----LPVRL 95 (271)
T ss_dssp SCCEECCH----HHHHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHTT-CCEEEEESCGGGHHHHHHHTTT----SSEEE
T ss_pred CccccCCH----HHHHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHcC-CEEEEEECCHHHHHHHHHhcCC----CCEEE
Confidence 33445453 344555566666778 99999999999999999997 489999999 999999887652 46999
Q ss_pred EEcccccccCC--CceeEEEEec
Q 014247 166 LHGRVEDVEID--EEVDVIISEW 186 (428)
Q Consensus 166 ~~~d~~~l~~~--~~~DlVvs~~ 186 (428)
+++|+.+++++ ..+|.|++++
T Consensus 96 i~~D~l~~~~~~~~~~~~iv~Nl 118 (271)
T 3fut_A 96 VFQDALLYPWEEVPQGSLLVANL 118 (271)
T ss_dssp EESCGGGSCGGGSCTTEEEEEEE
T ss_pred EECChhhCChhhccCccEEEecC
Confidence 99999988765 3689999986
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=7e-09 Score=110.02 Aligned_cols=121 Identities=20% Similarity=0.200 Sum_probs=92.5
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCC-----------------------------------------
Q 014247 97 TETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGA----------------------------------------- 135 (428)
Q Consensus 97 ~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~----------------------------------------- 135 (428)
.+.+..++.......++..|||.+||+|.+++.+|..+.
T Consensus 175 ~e~LAa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~ 254 (703)
T 3v97_A 175 KETLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAE 254 (703)
T ss_dssp CHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhcccc
Confidence 456777787777777889999999999999988886521
Q ss_pred --CeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC---CceeEEEEecc-hhhhcchhhHHHHHHHHhccc
Q 014247 136 --KRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID---EEVDVIISEWM-GYMLLYESMLGSVITARDRWL 208 (428)
Q Consensus 136 --~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~---~~~DlVvs~~~-~~~l~~~~~~~~~l~~~~~~L 208 (428)
.+|+|+|++ .+++.|++++..+|+.+.++|.++|+.++..+ ++||+|++++. +.-+.....+..+++.+.+.|
T Consensus 255 ~~~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~l 334 (703)
T 3v97_A 255 YSSHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIM 334 (703)
T ss_dssp CCCCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHH
T ss_pred CCccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHH
Confidence 379999999 99999999999999998899999999987543 28999999973 222223334556665555544
Q ss_pred ---ccCeEEEcc
Q 014247 209 ---KRGGLILPS 217 (428)
Q Consensus 209 ---kpgG~lv~~ 217 (428)
.|||.+++-
T Consensus 335 k~~~~g~~~~il 346 (703)
T 3v97_A 335 KNQFGGWNLSLF 346 (703)
T ss_dssp HHHCTTCEEEEE
T ss_pred HhhCCCCeEEEE
Confidence 479977653
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=98.82 E-value=4.3e-08 Score=87.39 Aligned_cols=97 Identities=18% Similarity=0.177 Sum_probs=75.2
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCC--CCcEEEEEcccccc---------------
Q 014247 112 EGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNL--TDKVIVLHGRVEDV--------------- 173 (428)
Q Consensus 112 ~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~--~~~v~~~~~d~~~l--------------- 173 (428)
+.++|||+||| ..+..+|+...++|++||.+ +.++.|+++++..++ .++|+++.+|+.+.
T Consensus 30 ~a~~VLEiGtG--ySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l 107 (202)
T 3cvo_A 30 EAEVILEYGSG--GSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSY 107 (202)
T ss_dssp HCSEEEEESCS--HHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGT
T ss_pred CCCEEEEECch--HHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhH
Confidence 45799999984 67788887534699999999 999999999999998 88999999996542
Q ss_pred --------cCC--CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccC
Q 014247 174 --------EID--EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 174 --------~~~--~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
... ++||+|+... -. ...++..+.++|+|||++++..
T Consensus 108 ~~~~~~i~~~~~~~~fDlIfIDg---~k-----~~~~~~~~l~~l~~GG~Iv~DN 154 (202)
T 3cvo_A 108 PDYPLAVWRTEGFRHPDVVLVDG---RF-----RVGCALATAFSITRPVTLLFDD 154 (202)
T ss_dssp THHHHGGGGCTTCCCCSEEEECS---SS-----HHHHHHHHHHHCSSCEEEEETT
T ss_pred HHHhhhhhccccCCCCCEEEEeC---CC-----chhHHHHHHHhcCCCeEEEEeC
Confidence 122 7899999865 11 1244444568899999998654
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.81 E-value=2.6e-09 Score=99.57 Aligned_cols=78 Identities=17% Similarity=0.140 Sum_probs=61.6
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeChH--------HHHHHHHHHHHCCCCCcEEEEEcccccc-c-CC--
Q 014247 109 SFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASD--------IAVQANEVVKANNLTDKVIVLHGRVEDV-E-ID-- 176 (428)
Q Consensus 109 ~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s~--------~~~~a~~~~~~~~~~~~v~~~~~d~~~l-~-~~-- 176 (428)
...++.+|||+|||+|.+++.+|+.|. +|+|+|+++ +++.|+++++.+++.++++++++|+.++ + ++
T Consensus 80 ~~~~~~~VLDlgcG~G~~a~~lA~~g~-~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~ 158 (258)
T 2r6z_A 80 NHTAHPTVWDATAGLGRDSFVLASLGL-TVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKT 158 (258)
T ss_dssp TGGGCCCEEETTCTTCHHHHHHHHTTC-CEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHH
T ss_pred CcCCcCeEEEeeCccCHHHHHHHHhCC-EEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhcc
Confidence 335678999999999999999999865 899999995 3444666666666666799999999875 2 22
Q ss_pred -CceeEEEEecc
Q 014247 177 -EEVDVIISEWM 187 (428)
Q Consensus 177 -~~~DlVvs~~~ 187 (428)
++||+|+++++
T Consensus 159 ~~~fD~V~~dP~ 170 (258)
T 2r6z_A 159 QGKPDIVYLDPM 170 (258)
T ss_dssp HCCCSEEEECCC
T ss_pred CCCccEEEECCC
Confidence 68999999764
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.80 E-value=1.2e-08 Score=96.02 Aligned_cols=81 Identities=19% Similarity=0.160 Sum_probs=64.9
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCe----EEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc
Q 014247 100 YRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKR----VYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE 174 (428)
Q Consensus 100 ~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~----V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~ 174 (428)
+.+.|.+.+...++.+|||||||+|.++..+++.+. + |+|+|++ .|++.++++. ..+++++++|+.+++
T Consensus 30 i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~-~~~~~V~avDid~~~l~~a~~~~-----~~~v~~i~~D~~~~~ 103 (279)
T 3uzu_A 30 VIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLA-TPGSPLHAVELDRDLIGRLEQRF-----GELLELHAGDALTFD 103 (279)
T ss_dssp HHHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHC-BTTBCEEEEECCHHHHHHHHHHH-----GGGEEEEESCGGGCC
T ss_pred HHHHHHHhcCCCCcCEEEEEccccHHHHHHHHHhCC-CcCCeEEEEECCHHHHHHHHHhc-----CCCcEEEECChhcCC
Confidence 444555666667889999999999999999999855 4 9999999 9999998873 246999999999987
Q ss_pred CCC-------ceeEEEEec
Q 014247 175 IDE-------EVDVIISEW 186 (428)
Q Consensus 175 ~~~-------~~DlVvs~~ 186 (428)
++. ..+.|++++
T Consensus 104 ~~~~~~~~~~~~~~vv~Nl 122 (279)
T 3uzu_A 104 FGSIARPGDEPSLRIIGNL 122 (279)
T ss_dssp GGGGSCSSSSCCEEEEEEC
T ss_pred hhHhcccccCCceEEEEcc
Confidence 653 234677775
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.77 E-value=1e-08 Score=95.14 Aligned_cols=83 Identities=18% Similarity=0.296 Sum_probs=66.1
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCC
Q 014247 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDE 177 (428)
Q Consensus 99 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~ 177 (428)
.+.+.|.+.+...++.+|||||||+|.++..+++.|+.+|+|+|++ .++..++++ . ..+++++++|+.+++++.
T Consensus 18 ~i~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~----~-~~~v~~i~~D~~~~~~~~ 92 (249)
T 3ftd_A 18 GVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI----G-DERLEVINEDASKFPFCS 92 (249)
T ss_dssp HHHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS----C-CTTEEEECSCTTTCCGGG
T ss_pred HHHHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc----c-CCCeEEEEcchhhCChhH
Confidence 4455666666677889999999999999999999876799999999 999888765 1 346999999999887653
Q ss_pred c--eeEEEEec
Q 014247 178 E--VDVIISEW 186 (428)
Q Consensus 178 ~--~DlVvs~~ 186 (428)
. ...|+++.
T Consensus 93 ~~~~~~vv~Nl 103 (249)
T 3ftd_A 93 LGKELKVVGNL 103 (249)
T ss_dssp SCSSEEEEEEC
T ss_pred ccCCcEEEEEC
Confidence 1 23677765
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=1.1e-08 Score=97.45 Aligned_cols=81 Identities=20% Similarity=0.287 Sum_probs=67.4
Q ss_pred HHhccCCCCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC--C---
Q 014247 104 IMQNQSFIEGKVVVDVGCGTGILSIFCAQAG-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI--D--- 176 (428)
Q Consensus 104 i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~--~--- 176 (428)
+.+.+...++.+|||+|||+|.++..+++.. ..+|+|+|.+ .+++.|++++..++ ++++++++|+.+++. .
T Consensus 18 ~l~~L~~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g--~~v~~v~~d~~~l~~~l~~~g 95 (301)
T 1m6y_A 18 VIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYREADFLLKTLG 95 (301)
T ss_dssp HHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGGGHHHHHHHTT
T ss_pred HHHhcCCCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEECCHHHHHHHHHhcC
Confidence 3344555788999999999999999999873 4599999999 99999999988776 579999999988742 1
Q ss_pred -CceeEEEEec
Q 014247 177 -EEVDVIISEW 186 (428)
Q Consensus 177 -~~~DlVvs~~ 186 (428)
.+||.|++++
T Consensus 96 ~~~~D~Vl~D~ 106 (301)
T 1m6y_A 96 IEKVDGILMDL 106 (301)
T ss_dssp CSCEEEEEEEC
T ss_pred CCCCCEEEEcC
Confidence 5799999875
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.74 E-value=1.1e-08 Score=101.11 Aligned_cols=73 Identities=23% Similarity=0.238 Sum_probs=64.3
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHC--CCCCcEEEEEcccccc-cC--CCceeEEEEe
Q 014247 112 EGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKAN--NLTDKVIVLHGRVEDV-EI--DEEVDVIISE 185 (428)
Q Consensus 112 ~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~--~~~~~v~~~~~d~~~l-~~--~~~~DlVvs~ 185 (428)
+|.+|||+|||+|..+..+++.+. +|+++|++ .+++.|+++++.+ ++ ++++++++|+.+. +. .++||+|+++
T Consensus 93 ~g~~VLDLgcG~G~~al~LA~~g~-~V~~VD~s~~~l~~Ar~N~~~~~~gl-~~i~~i~~Da~~~L~~~~~~~fDvV~lD 170 (410)
T 3ll7_A 93 EGTKVVDLTGGLGIDFIALMSKAS-QGIYIERNDETAVAARHNIPLLLNEG-KDVNILTGDFKEYLPLIKTFHPDYIYVD 170 (410)
T ss_dssp TTCEEEESSCSSSHHHHHHHTTCS-EEEEEESCHHHHHHHHHHHHHHSCTT-CEEEEEESCGGGSHHHHHHHCCSEEEEC
T ss_pred CCCEEEEeCCCchHHHHHHHhcCC-EEEEEECCHHHHHHHHHhHHHhccCC-CcEEEEECcHHHhhhhccCCCceEEEEC
Confidence 489999999999999999999865 99999999 9999999999987 77 5799999999874 32 2589999997
Q ss_pred c
Q 014247 186 W 186 (428)
Q Consensus 186 ~ 186 (428)
+
T Consensus 171 P 171 (410)
T 3ll7_A 171 P 171 (410)
T ss_dssp C
T ss_pred C
Confidence 6
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.66 E-value=1.5e-08 Score=94.17 Aligned_cols=81 Identities=12% Similarity=0.169 Sum_probs=62.4
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCe--EEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC
Q 014247 100 YRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKR--VYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID 176 (428)
Q Consensus 100 ~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~--V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~ 176 (428)
+.+.|.+.+...++.+|||||||+|.++. +++ + .+ |+|+|++ .|+..+++++... ++++++++|+.+++++
T Consensus 9 i~~~iv~~~~~~~~~~VLEIG~G~G~lt~-l~~-~-~~~~v~avEid~~~~~~a~~~~~~~---~~v~~i~~D~~~~~~~ 82 (252)
T 1qyr_A 9 VIDSIVSAINPQKGQAMVEIGPGLAALTE-PVG-E-RLDQLTVIELDRDLAARLQTHPFLG---PKLTIYQQDAMTFNFG 82 (252)
T ss_dssp HHHHHHHHHCCCTTCCEEEECCTTTTTHH-HHH-T-TCSCEEEECCCHHHHHHHHTCTTTG---GGEEEECSCGGGCCHH
T ss_pred HHHHHHHhcCCCCcCEEEEECCCCcHHHH-hhh-C-CCCeEEEEECCHHHHHHHHHHhccC---CceEEEECchhhCCHH
Confidence 44455555566788999999999999999 765 3 36 9999999 9999888765432 3699999999987654
Q ss_pred C------ceeEEEEec
Q 014247 177 E------EVDVIISEW 186 (428)
Q Consensus 177 ~------~~DlVvs~~ 186 (428)
. ..|.|+++.
T Consensus 83 ~~~~~~~~~~~vvsNl 98 (252)
T 1qyr_A 83 ELAEKMGQPLRVFGNL 98 (252)
T ss_dssp HHHHHHTSCEEEEEEC
T ss_pred HhhcccCCceEEEECC
Confidence 2 347888876
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=98.66 E-value=9e-09 Score=95.69 Aligned_cols=85 Identities=19% Similarity=0.254 Sum_probs=64.1
Q ss_pred HHHHhccCCCCC--CEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHH---C----C-CCCcEEEEEccc
Q 014247 102 AAIMQNQSFIEG--KVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKA---N----N-LTDKVIVLHGRV 170 (428)
Q Consensus 102 ~~i~~~~~~~~~--~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~---~----~-~~~~v~~~~~d~ 170 (428)
+.+.+.+...++ .+|||+|||+|..++.+|+.|+ +|+++|.+ .++..+++.++. + + +.++++++++|+
T Consensus 76 e~l~~al~l~~g~~~~VLDl~~G~G~dal~lA~~g~-~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~ 154 (258)
T 2oyr_A 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS 154 (258)
T ss_dssp SHHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCH
T ss_pred HHHHHHhcccCCCCCEEEEcCCcCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCH
Confidence 344455555566 8999999999999999999977 79999999 776666555432 1 2 324699999999
Q ss_pred cccc--CCCceeEEEEecc
Q 014247 171 EDVE--IDEEVDVIISEWM 187 (428)
Q Consensus 171 ~~l~--~~~~~DlVvs~~~ 187 (428)
.++. .+.+||+|+++++
T Consensus 155 ~~~L~~~~~~fDvV~lDP~ 173 (258)
T 2oyr_A 155 LTALTDITPRPQVVYLDPM 173 (258)
T ss_dssp HHHSTTCSSCCSEEEECCC
T ss_pred HHHHHhCcccCCEEEEcCC
Confidence 8742 2357999999874
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=98.59 E-value=7.3e-08 Score=99.19 Aligned_cols=118 Identities=10% Similarity=-0.060 Sum_probs=86.0
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc----C---------------CCeEEEEeCh-HHHHHHHHHHHHCC
Q 014247 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA----G---------------AKRVYAVDAS-DIAVQANEVVKANN 158 (428)
Q Consensus 99 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~----g---------------~~~V~giD~s-~~~~~a~~~~~~~~ 158 (428)
...+.+.+.+...++.+|||.+||+|.+...+++. + ..+++|+|++ .++..|+.++..++
T Consensus 156 ~iv~~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~g 235 (541)
T 2ar0_A 156 PLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHD 235 (541)
T ss_dssp HHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhC
Confidence 34455666666667889999999999998888764 1 1379999999 99999999888777
Q ss_pred CCC----cEEEEEcccccccC--CCceeEEEEecchhhhcc-----------hhhHHHHHHHHhcccccCeEEEc
Q 014247 159 LTD----KVIVLHGRVEDVEI--DEEVDVIISEWMGYMLLY-----------ESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 159 ~~~----~v~~~~~d~~~l~~--~~~~DlVvs~~~~~~l~~-----------~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
... ++.+.++|....+. ..+||+|++++....... ...-..++..+.++|+|||++.+
T Consensus 236 i~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~ 310 (541)
T 2ar0_A 236 IEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAV 310 (541)
T ss_dssp CCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEE
T ss_pred CCccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEE
Confidence 754 27788998765431 368999999874222211 01123678888999999998875
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.51 E-value=3.9e-07 Score=85.69 Aligned_cols=108 Identities=15% Similarity=0.178 Sum_probs=82.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHC--C-C-CCcEEEEEcccccccC--CCceeEE
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKAN--N-L-TDKVIVLHGRVEDVEI--DEEVDVI 182 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~--~-~-~~~v~~~~~d~~~l~~--~~~~DlV 182 (428)
...++||-||.|.|..+..+++. +.++|+.||++ .+++.+++.+... + + ..+++++.+|....-. .++||+|
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI 161 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI 161 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence 45689999999999999999997 56799999999 8999998876431 1 2 4689999999887533 3899999
Q ss_pred EEecchhhhcch-hhHHHHHHHHhcccccCeEEEccC
Q 014247 183 ISEWMGYMLLYE-SMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 183 vs~~~~~~l~~~-~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
+........... ..-.++++.+++.|+|||+++...
T Consensus 162 i~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~ 198 (294)
T 3o4f_A 162 ISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQN 198 (294)
T ss_dssp EESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEE
T ss_pred EEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEec
Confidence 997632111111 124578899999999999999643
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=7.9e-08 Score=88.77 Aligned_cols=110 Identities=15% Similarity=0.199 Sum_probs=69.4
Q ss_pred HhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC-CCceeE
Q 014247 105 MQNQSFIEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI-DEEVDV 181 (428)
Q Consensus 105 ~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~-~~~~Dl 181 (428)
.+.....++.+|||||||+|.++..+++. ++..|+|+|++ .+....... .....++..+..++....+ +++||+
T Consensus 67 ~ek~~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~---~~~g~~ii~~~~~~dv~~l~~~~~Dl 143 (277)
T 3evf_A 67 HERGYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNV---QSLGWNIITFKDKTDIHRLEPVKCDT 143 (277)
T ss_dssp HHTTSSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCC---CBTTGGGEEEECSCCTTTSCCCCCSE
T ss_pred HHhCCCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCccccccc---CcCCCCeEEEeccceehhcCCCCccE
Confidence 33344567889999999999999999876 67789999998 542111100 0001134445555543333 378999
Q ss_pred EEEecchhhhcchhh---HHHHHHHHhcccccC-eEEEcc
Q 014247 182 IISEWMGYMLLYESM---LGSVITARDRWLKRG-GLILPS 217 (428)
Q Consensus 182 Vvs~~~~~~l~~~~~---~~~~l~~~~~~Lkpg-G~lv~~ 217 (428)
|+|+...+.-.+..+ .-.+|+.+.++|+|| |.+++.
T Consensus 144 VlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~K 183 (277)
T 3evf_A 144 LLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVK 183 (277)
T ss_dssp EEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred EEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEE
Confidence 999863331111111 123478888999999 999863
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.43 E-value=2.8e-07 Score=94.77 Aligned_cols=117 Identities=12% Similarity=-0.026 Sum_probs=82.4
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc--------C--------CCeEEEEeCh-HHHHHHHHHHHHCCCCC
Q 014247 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA--------G--------AKRVYAVDAS-DIAVQANEVVKANNLTD 161 (428)
Q Consensus 99 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~--------g--------~~~V~giD~s-~~~~~a~~~~~~~~~~~ 161 (428)
...+.|.+.+...++ +|||.+||+|.+...+++. + ...++|+|++ .++..|+.++..+++..
T Consensus 232 ~Vv~lmv~ll~p~~~-~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~ 310 (544)
T 3khk_A 232 SIVTLIVEMLEPYKG-RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDF 310 (544)
T ss_dssp HHHHHHHHHHCCCSE-EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHhcCCC-eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCc
Confidence 344555555544444 9999999999988777542 0 2379999999 99999999998888876
Q ss_pred cEEEEEcccccccC--CCceeEEEEecchhhhcc-------------------------hh-hHHHHHHHHhcccccCeE
Q 014247 162 KVIVLHGRVEDVEI--DEEVDVIISEWMGYMLLY-------------------------ES-MLGSVITARDRWLKRGGL 213 (428)
Q Consensus 162 ~v~~~~~d~~~l~~--~~~~DlVvs~~~~~~l~~-------------------------~~-~~~~~l~~~~~~LkpgG~ 213 (428)
++.+.++|....+. ..+||+|++++....-.+ .. .--.++..+.+.|+|||+
T Consensus 311 ~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr 390 (544)
T 3khk_A 311 NFGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGS 390 (544)
T ss_dssp BCCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEE
T ss_pred ccceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCce
Confidence 66557888655432 378999999874321100 00 012578888999999998
Q ss_pred EEc
Q 014247 214 ILP 216 (428)
Q Consensus 214 lv~ 216 (428)
+.+
T Consensus 391 ~ai 393 (544)
T 3khk_A 391 MAL 393 (544)
T ss_dssp EEE
T ss_pred EEE
Confidence 764
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.37 E-value=1.3e-06 Score=89.76 Aligned_cols=106 Identities=11% Similarity=0.036 Sum_probs=80.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHc----CCCeEEEEeCh-HHHHHHHHHHHHCCCC-CcEEEEEcccccc--cC--CCce
Q 014247 110 FIEGKVVVDVGCGTGILSIFCAQA----GAKRVYAVDAS-DIAVQANEVVKANNLT-DKVIVLHGRVEDV--EI--DEEV 179 (428)
Q Consensus 110 ~~~~~~VLDiGcGtG~ls~~la~~----g~~~V~giD~s-~~~~~a~~~~~~~~~~-~~v~~~~~d~~~l--~~--~~~~ 179 (428)
..++.+|||.+||+|.+...+++. +...++|+|++ .++..|+.++..+++. +++.+.++|.... +. ..+|
T Consensus 219 ~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~f 298 (542)
T 3lkd_A 219 DKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNF 298 (542)
T ss_dssp TCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCB
T ss_pred CCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccccccccc
Confidence 346789999999999998888775 24589999999 8999999998888885 4689999997765 22 3789
Q ss_pred eEEEEecchhhhcch--------------------hh-HHHHHHHHhcccc-cCeEEEc
Q 014247 180 DVIISEWMGYMLLYE--------------------SM-LGSVITARDRWLK-RGGLILP 216 (428)
Q Consensus 180 DlVvs~~~~~~l~~~--------------------~~-~~~~l~~~~~~Lk-pgG~lv~ 216 (428)
|+|++++... ..+. .. --.++..+.+.|+ |||++.+
T Consensus 299 D~IvaNPPf~-~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~ 356 (542)
T 3lkd_A 299 DGVLMNPPYS-AKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAI 356 (542)
T ss_dssp SEEEECCCTT-CCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEE
T ss_pred cEEEecCCcC-CccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEE
Confidence 9999987421 1110 00 1247888889999 9998764
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=98.36 E-value=3.4e-06 Score=79.14 Aligned_cols=120 Identities=18% Similarity=0.153 Sum_probs=86.7
Q ss_pred hhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc----C--CCeEEEEeCh-H----------------------
Q 014247 95 VRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA----G--AKRVYAVDAS-D---------------------- 145 (428)
Q Consensus 95 ~r~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~----g--~~~V~giD~s-~---------------------- 145 (428)
.+...+...+...........|||+|+..|..++.++.. + ..+|+++|.. .
T Consensus 89 ~r~~~L~~l~~~v~~~~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~ 168 (282)
T 2wk1_A 89 KRLENIRQCVEDVIGNNVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNS 168 (282)
T ss_dssp HHHHHHHHHHHHHHHTTCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHH
T ss_pred HHHHHHHHHHHHHHhcCCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccc
Confidence 344455555544433345679999999999988887653 1 4589999953 1
Q ss_pred ----HHHHHHHHHHHCCCC-CcEEEEEcccccccC---CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 146 ----IAVQANEVVKANNLT-DKVIVLHGRVEDVEI---DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 146 ----~~~~a~~~~~~~~~~-~~v~~~~~d~~~l~~---~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
..+.+++++++.++. ++|+++.+++.+.-. .++||+|+... -. ++ .....|..+..+|+|||++++.
T Consensus 169 ~~~~~~~~ar~n~~~~gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDa---D~-y~-~~~~~Le~~~p~L~pGGiIv~D 243 (282)
T 2wk1_A 169 VLAVSEEEVRRNFRNYDLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDG---DL-YE-STWDTLTNLYPKVSVGGYVIVD 243 (282)
T ss_dssp HHCCCHHHHHHHHHHTTCCSTTEEEEESCHHHHSTTCCCCCEEEEEECC---CS-HH-HHHHHHHHHGGGEEEEEEEEES
T ss_pred cchhHHHHHHHHHHHcCCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcC---Cc-cc-cHHHHHHHHHhhcCCCEEEEEc
Confidence 356688999999984 889999999876422 26899999764 11 22 2456788899999999999987
Q ss_pred CC
Q 014247 218 YA 219 (428)
Q Consensus 218 ~~ 219 (428)
..
T Consensus 244 D~ 245 (282)
T 2wk1_A 244 DY 245 (282)
T ss_dssp SC
T ss_pred CC
Confidence 64
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.35 E-value=1.8e-07 Score=86.48 Aligned_cols=110 Identities=19% Similarity=0.214 Sum_probs=68.7
Q ss_pred HHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEc--ccccccCCCc
Q 014247 103 AIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHG--RVEDVEIDEE 178 (428)
Q Consensus 103 ~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~--d~~~l~~~~~ 178 (428)
.|.+.....++.+|||||||.|.++..+++. ++..|+|+|++ .+...+... .....++..+.. |+..++ +.+
T Consensus 81 ei~eK~~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~---~~~g~~ii~~~~~~dv~~l~-~~~ 156 (282)
T 3gcz_A 81 WMEERGYVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMR---TTLGWNLIRFKDKTDVFNME-VIP 156 (282)
T ss_dssp HHHHTTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCC---CBTTGGGEEEECSCCGGGSC-CCC
T ss_pred HHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCcccccccc---ccCCCceEEeeCCcchhhcC-CCC
Confidence 3444445678889999999999999998864 77789999998 643222110 001112333332 443332 378
Q ss_pred eeEEEEecchh----hhcchhhHHHHHHHHhcccccC--eEEEcc
Q 014247 179 VDVIISEWMGY----MLLYESMLGSVITARDRWLKRG--GLILPS 217 (428)
Q Consensus 179 ~DlVvs~~~~~----~l~~~~~~~~~l~~~~~~Lkpg--G~lv~~ 217 (428)
+|+|+|+...+ ...+.. ...+|.-+.++|+|| |.+++.
T Consensus 157 ~DvVLSDmApnsG~~~~D~~r-s~~LL~~A~~~Lk~g~~G~Fv~K 200 (282)
T 3gcz_A 157 GDTLLCDIGESSPSIAVEEQR-TLRVLNCAKQWLQEGNYTEFCIK 200 (282)
T ss_dssp CSEEEECCCCCCSCHHHHHHH-HHHHHHHHHHHHHHHCCCEEEEE
T ss_pred cCEEEecCccCCCChHHHHHH-HHHHHHHHHHHcCCCCCCcEEEE
Confidence 99999986433 111111 123477778999999 998853
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=1.6e-06 Score=84.27 Aligned_cols=115 Identities=17% Similarity=0.153 Sum_probs=86.7
Q ss_pred ccCCCCCCEEEEEcCCCcHHHHHHHHcCC-CeEEEEeCh-HHHHHHHHHHHHCCCC-----CcEEEEEccccccc--CCC
Q 014247 107 NQSFIEGKVVVDVGCGTGILSIFCAQAGA-KRVYAVDAS-DIAVQANEVVKANNLT-----DKVIVLHGRVEDVE--IDE 177 (428)
Q Consensus 107 ~~~~~~~~~VLDiGcGtG~ls~~la~~g~-~~V~giD~s-~~~~~a~~~~~~~~~~-----~~v~~~~~d~~~l~--~~~ 177 (428)
.+...+|.+|||+.+|.|.=+..++..+. ..|+++|++ .-+...++++++.+.. .++.+...|...+. ..+
T Consensus 143 ~L~~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~ 222 (359)
T 4fzv_A 143 ALGLQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGD 222 (359)
T ss_dssp HHCCCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTT
T ss_pred HhCCCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccc
Confidence 44568999999999999999998888743 379999999 7788888888776543 46899999988764 247
Q ss_pred ceeEEEEecchhh----hcc-h---------h-------hHHHHHHHHhcccccCeEEEccCCee
Q 014247 178 EVDVIISEWMGYM----LLY-E---------S-------MLGSVITARDRWLKRGGLILPSYATL 221 (428)
Q Consensus 178 ~~DlVvs~~~~~~----l~~-~---------~-------~~~~~l~~~~~~LkpgG~lv~~~~~~ 221 (428)
+||.|+++...+. ... . . .-..+|....++|||||+|+-+++++
T Consensus 223 ~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl 287 (359)
T 4fzv_A 223 TYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSL 287 (359)
T ss_dssp CEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred cCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Confidence 8999998753221 110 0 0 12467888889999999999877764
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=5.6e-07 Score=80.54 Aligned_cols=111 Identities=18% Similarity=0.218 Sum_probs=72.2
Q ss_pred HHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeChHHHHHHHHHHHHCCCCCcEEEEEc-ccccccCCCcee
Q 014247 103 AIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHG-RVEDVEIDEEVD 180 (428)
Q Consensus 103 ~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s~~~~~a~~~~~~~~~~~~v~~~~~-d~~~l~~~~~~D 180 (428)
.|.+.....++.+|||+||++|.++..++.. |+++|+|+|+..+-..--..++..|+. .|+|.++ |+..++. .++|
T Consensus 69 ei~ek~~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~s~gwn-~v~fk~gvDv~~~~~-~~~D 146 (267)
T 3p8z_A 69 WFVERNMVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYGWN-IVKLMSGKDVFYLPP-EKCD 146 (267)
T ss_dssp HHHHTTSSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCCTTTT-SEEEECSCCGGGCCC-CCCS
T ss_pred HHHHhcCCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhhhcCcC-ceEEEeccceeecCC-cccc
Confidence 3333335678899999999999999988876 888999999982211000011233453 5999999 9877665 7899
Q ss_pred EEEEecchhhhcchhh---HHHHHHHHhcccccCeEEEc
Q 014247 181 VIISEWMGYMLLYESM---LGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 181 lVvs~~~~~~l~~~~~---~~~~l~~~~~~LkpgG~lv~ 216 (428)
+|+|+.-...-..+.+ .-.+|+-+.++|++ |-+++
T Consensus 147 tllcDIgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc~ 184 (267)
T 3p8z_A 147 TLLCDIGESSPSPTVEESRTIRVLKMVEPWLKN-NQFCI 184 (267)
T ss_dssp EEEECCCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEE
T ss_pred EEEEecCCCCCChhhhhhHHHHHHHHHHHhccc-CCEEE
Confidence 9999752111111111 12266777899998 55553
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=3.6e-06 Score=81.29 Aligned_cols=69 Identities=19% Similarity=0.221 Sum_probs=56.6
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeChHHHHHHHHHHHHCCCCCcEEEEEcccccccCC-CceeEEEEec
Q 014247 110 FIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDVEID-EEVDVIISEW 186 (428)
Q Consensus 110 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~-~~~DlVvs~~ 186 (428)
..+|.+|||+||++|.++..+++.|. +|+|||..+|..... . ..+|+++++|.....++ .+||+|+|+.
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~rg~-~V~aVD~~~l~~~l~----~---~~~V~~~~~d~~~~~~~~~~~D~vvsDm 278 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKRNM-WVYSVDNGPMAQSLM----D---TGQVTWLREDGFKFRPTRSNISWMVCDM 278 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHTTC-EEEEECSSCCCHHHH----T---TTCEEEECSCTTTCCCCSSCEEEEEECC
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHCCC-EEEEEEhhhcChhhc----c---CCCeEEEeCccccccCCCCCcCEEEEcC
Confidence 36899999999999999999999987 899999876543322 1 13699999999887765 6899999975
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.19 E-value=1.7e-06 Score=80.34 Aligned_cols=106 Identities=17% Similarity=0.134 Sum_probs=69.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-------CC------CeEEEEeCh----HHHH-----------HHHHHHHHC-----
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQA-------GA------KRVYAVDAS----DIAV-----------QANEVVKAN----- 157 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~-------g~------~~V~giD~s----~~~~-----------~a~~~~~~~----- 157 (428)
.++.+|||||+|+|..++.+++. +. .+++++|.. +.+. .|++.+...
T Consensus 59 ~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~ 138 (257)
T 2qy6_A 59 HPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLP 138 (257)
T ss_dssp SSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCS
T ss_pred CCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhcccccc
Confidence 45679999999999987776543 22 389999964 2333 445554431
Q ss_pred -----CCC---CcEEEEEcccccc-cC-CC----ceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 158 -----NLT---DKVIVLHGRVEDV-EI-DE----EVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 158 -----~~~---~~v~~~~~d~~~l-~~-~~----~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
.+. .+++++.+|+.+. +. +. .||+|+...+.-.-..+---..+++.+.++|+|||+++.
T Consensus 139 g~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~t 211 (257)
T 2qy6_A 139 GCHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT 211 (257)
T ss_dssp EEEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEE
T ss_pred chhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEE
Confidence 021 3588999998873 32 22 799999865221111111246789999999999999883
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=98.19 E-value=3.9e-06 Score=88.31 Aligned_cols=106 Identities=13% Similarity=0.072 Sum_probs=71.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcC----CCeEEEEeCh-HHHHHH--HHHHHHCCCCC---cEEEEEccccccc--CCCc
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAG----AKRVYAVDAS-DIAVQA--NEVVKANNLTD---KVIVLHGRVEDVE--IDEE 178 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g----~~~V~giD~s-~~~~~a--~~~~~~~~~~~---~v~~~~~d~~~l~--~~~~ 178 (428)
.++.+|||.|||+|.+...+++.. ..+++|+|++ .++..| +.++..+.+.. ...+...|+.... ...+
T Consensus 320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~k 399 (878)
T 3s1s_A 320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFAN 399 (878)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTT
T ss_pred CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCC
Confidence 457899999999999999998863 2379999999 888888 44443322211 1355566666532 2378
Q ss_pred eeEEEEecchhh-hcch-------------------------hhHHHHHHHHhcccccCeEEEc
Q 014247 179 VDVIISEWMGYM-LLYE-------------------------SMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 179 ~DlVvs~~~~~~-l~~~-------------------------~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
||+|++++.... .... .....++..+.++|+|||++.+
T Consensus 400 FDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAf 463 (878)
T 3s1s_A 400 VSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISA 463 (878)
T ss_dssp EEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEE
T ss_pred CCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEE
Confidence 999999974211 0000 1133467888899999998875
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=2.2e-06 Score=83.13 Aligned_cols=120 Identities=21% Similarity=0.161 Sum_probs=85.8
Q ss_pred HHHHHHHHhccC-CCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHH---CCC----CCcEEEEEc
Q 014247 98 ETYRAAIMQNQS-FIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKA---NNL----TDKVIVLHG 168 (428)
Q Consensus 98 ~~~~~~i~~~~~-~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~---~~~----~~~v~~~~~ 168 (428)
..|.+.+....- ..+.++||-||.|.|..+..+.+...++|+.||++ .+++.+++.+.. ..+ .++++++.+
T Consensus 190 ~~Y~e~l~h~~l~~~~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~ 269 (381)
T 3c6k_A 190 LAYTRAIMGSGKEDYTGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIE 269 (381)
T ss_dssp HHHHHHHTTTTCCCCTTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEES
T ss_pred HHHHHHHHHHHhhcCCCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehH
Confidence 456666654321 23568999999999999999999877899999999 899999886432 111 246899999
Q ss_pred cccccc-----CCCceeEEEEecchhh-------hcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 169 RVEDVE-----IDEEVDVIISEWMGYM-------LLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 169 d~~~l~-----~~~~~DlVvs~~~~~~-------l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
|....- ..++||+|+....... ........++++.+++.|+|||+++..
T Consensus 270 Da~~fl~~~~~~~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q 330 (381)
T 3c6k_A 270 DCIPVLKRYAKEGREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQ 330 (381)
T ss_dssp CHHHHHHHHHHHTCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred HHHHHHHhhhhccCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 987642 2368999998753210 001122467889999999999999854
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=98.10 E-value=7.3e-06 Score=75.83 Aligned_cols=111 Identities=19% Similarity=0.226 Sum_probs=71.7
Q ss_pred HHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEc-ccccccCCCc
Q 014247 102 AAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHG-RVEDVEIDEE 178 (428)
Q Consensus 102 ~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~-d~~~l~~~~~ 178 (428)
..|.+.....++.+||||||++|.++..++.. |+++|+|+|+. .-.+. -..++..++ +-|.++.+ |+..++. .+
T Consensus 84 ~ei~~~~~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~-P~~~~ql~w-~lV~~~~~~Dv~~l~~-~~ 160 (321)
T 3lkz_A 84 RWLVERRFLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEE-PQLVQSYGW-NIVTMKSGVDVFYRPS-EC 160 (321)
T ss_dssp HHHHHTTSCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCC-CCCCCBTTG-GGEEEECSCCTTSSCC-CC
T ss_pred HHHHHhcCCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccC-cchhhhcCC-cceEEEeccCHhhCCC-CC
Confidence 34444455678889999999999999988776 88899999998 41100 000011222 23888888 8887765 67
Q ss_pred eeEEEEecchhhhcc-hhh---HHHHHHHHhcccccC-eEEEc
Q 014247 179 VDVIISEWMGYMLLY-ESM---LGSVITARDRWLKRG-GLILP 216 (428)
Q Consensus 179 ~DlVvs~~~~~~l~~-~~~---~~~~l~~~~~~Lkpg-G~lv~ 216 (428)
+|+|+|+. +..-.. +.+ .-.+|+-+.++|++| |-+++
T Consensus 161 ~D~ivcDi-geSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~ 202 (321)
T 3lkz_A 161 CDTLLCDI-GESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCV 202 (321)
T ss_dssp CSEEEECC-CCCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CCEEEEEC-ccCCCChhhhhhHHHHHHHHHHHHhccCCCcEEE
Confidence 99999975 211111 111 122566667889888 76664
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.10 E-value=2e-05 Score=76.83 Aligned_cols=103 Identities=18% Similarity=0.237 Sum_probs=63.2
Q ss_pred CCEEEEEcCCCcHHHHHHHHc------------C----CCeEEEEeCh-HHHHHHHHHHHHC-----------CCCCcEE
Q 014247 113 GKVVVDVGCGTGILSIFCAQA------------G----AKRVYAVDAS-DIAVQANEVVKAN-----------NLTDKVI 164 (428)
Q Consensus 113 ~~~VLDiGcGtG~ls~~la~~------------g----~~~V~giD~s-~~~~~a~~~~~~~-----------~~~~~v~ 164 (428)
..+|+|+|||+|..++.++.. | .-+|+.-|+. ......-+.+... +...+-.
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 579999999999998887321 1 1277788876 4433322222211 0000112
Q ss_pred EEEccccc---ccC-CCceeEEEEecchhhhcchh--------------------------------------hHHHHHH
Q 014247 165 VLHGRVED---VEI-DEEVDVIISEWMGYMLLYES--------------------------------------MLGSVIT 202 (428)
Q Consensus 165 ~~~~d~~~---l~~-~~~~DlVvs~~~~~~l~~~~--------------------------------------~~~~~l~ 202 (428)
|+.+.... -.+ ++++|+|+|+. .++|.. |+..+|+
T Consensus 133 f~~gvpgSFy~rlfP~~S~d~v~Ss~---aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~ 209 (374)
T 3b5i_A 133 FVAGVPGSFYRRLFPARTIDFFHSAF---SLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLR 209 (374)
T ss_dssp EEEEEESCTTSCCSCTTCEEEEEEES---CTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecChhhhcccCCCcceEEEEecc---eeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 33333222 223 48999999987 444432 5677899
Q ss_pred HHhcccccCeEEEccC
Q 014247 203 ARDRWLKRGGLILPSY 218 (428)
Q Consensus 203 ~~~~~LkpgG~lv~~~ 218 (428)
.+.+.|+|||++++..
T Consensus 210 ~ra~eL~pGG~mvl~~ 225 (374)
T 3b5i_A 210 ARAAEVKRGGAMFLVC 225 (374)
T ss_dssp HHHHHEEEEEEEEEEE
T ss_pred HHHHHhCCCCEEEEEE
Confidence 9999999999999764
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=98.10 E-value=6.1e-06 Score=68.64 Aligned_cols=68 Identities=16% Similarity=0.237 Sum_probs=52.3
Q ss_pred HHHHHHHHhccCCCCCCEEEEEcCCCc-HHHHHHHH-cCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc
Q 014247 98 ETYRAAIMQNQSFIEGKVVVDVGCGTG-ILSIFCAQ-AGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE 174 (428)
Q Consensus 98 ~~~~~~i~~~~~~~~~~~VLDiGcGtG-~ls~~la~-~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~ 174 (428)
+.+.+.|.+.. .++.+|||||||+| ..+..|++ .|+ .|+++|++ ..+. +++.|+.+..
T Consensus 23 e~LaeYI~~~~--~~~~rVlEVG~G~g~~vA~~La~~~g~-~V~atDInp~Av~----------------~v~dDiF~P~ 83 (153)
T 2k4m_A 23 NDLAVYIIRCS--GPGTRVVEVGAGRFLYVSDYIRKHSKV-DLVLTDIKPSHGG----------------IVRDDITSPR 83 (153)
T ss_dssp HHHHHHHHHHS--CSSSEEEEETCTTCCHHHHHHHHHSCC-EEEEECSSCSSTT----------------EECCCSSSCC
T ss_pred HHHHHHHHhcC--CCCCcEEEEccCCChHHHHHHHHhCCC-eEEEEECCccccc----------------eEEccCCCCc
Confidence 34566666554 45679999999999 59999997 787 89999999 4432 8888988744
Q ss_pred CC--CceeEEEE
Q 014247 175 ID--EEVDVIIS 184 (428)
Q Consensus 175 ~~--~~~DlVvs 184 (428)
+. +.||+|.+
T Consensus 84 ~~~Y~~~DLIYs 95 (153)
T 2k4m_A 84 MEIYRGAALIYS 95 (153)
T ss_dssp HHHHTTEEEEEE
T ss_pred ccccCCcCEEEE
Confidence 43 58999987
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=3.7e-06 Score=78.25 Aligned_cols=112 Identities=16% Similarity=0.103 Sum_probs=67.1
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCC-CcEEEEEc-ccccccCC
Q 014247 101 RAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLT-DKVIVLHG-RVEDVEID 176 (428)
Q Consensus 101 ~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~-~~v~~~~~-d~~~l~~~ 176 (428)
.++..+ --..++.+|||+||++|.++..+++. ++..|+|+|+. .+...... . .... +.+.+..+ |+..+. +
T Consensus 71 ~ei~ek-~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~-~--~~~~~~iv~~~~~~di~~l~-~ 145 (300)
T 3eld_A 71 RWLHER-GYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIH-M--QTLGWNIVKFKDKSNVFTMP-T 145 (300)
T ss_dssp HHHHHH-TSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-C--CBTTGGGEEEECSCCTTTSC-C
T ss_pred HHHHHh-CCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccccc-c--cccCCceEEeecCceeeecC-C
Confidence 334444 33467899999999999999999985 77789999997 43111000 0 0001 12333322 333322 3
Q ss_pred CceeEEEEecchhhhcchhh---HHHHHHHHhcccccC-eEEEcc
Q 014247 177 EEVDVIISEWMGYMLLYESM---LGSVITARDRWLKRG-GLILPS 217 (428)
Q Consensus 177 ~~~DlVvs~~~~~~l~~~~~---~~~~l~~~~~~Lkpg-G~lv~~ 217 (428)
+++|+|+|+...+.-.+..| ...+|.-+.++|+|| |.++..
T Consensus 146 ~~~DlVlsD~APnsG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~K 190 (300)
T 3eld_A 146 EPSDTLLCDIGESSSNPLVERDRTMKVLENFERWKHVNTENFCVK 190 (300)
T ss_dssp CCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEE
T ss_pred CCcCEEeecCcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 78999999764331111111 133477778999999 999853
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=2.6e-05 Score=70.94 Aligned_cols=110 Identities=18% Similarity=0.205 Sum_probs=65.4
Q ss_pred HHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHH-CCCCCcEEEEEc-ccccccCCC
Q 014247 102 AAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKA-NNLTDKVIVLHG-RVEDVEIDE 177 (428)
Q Consensus 102 ~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~-~~~~~~v~~~~~-d~~~l~~~~ 177 (428)
..|.+..-..++.+|||+||+.|.++..+++. +...|.|.++. .. .. ...... .|+ +-+.|.++ |+.++. +.
T Consensus 63 ~EIdeK~likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~~-~P~~~~~~Gv-~~i~~~~G~Df~~~~-~~ 138 (269)
T 2px2_A 63 RWLVERRFVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-HE-EPMLMQSYGW-NIVTMKSGVDVFYKP-SE 138 (269)
T ss_dssp HHHHHTTSCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-SC-CCCCCCSTTG-GGEEEECSCCGGGSC-CC
T ss_pred HHHHHcCCCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-cc-CCCcccCCCc-eEEEeeccCCccCCC-CC
Confidence 34444434578999999999999999999986 33344455444 21 00 000000 111 12466667 998854 35
Q ss_pred ceeEEEEecchhhhc----chhhHHHHHHHHhcccccCe-EEEc
Q 014247 178 EVDVIISEWMGYMLL----YESMLGSVITARDRWLKRGG-LILP 216 (428)
Q Consensus 178 ~~DlVvs~~~~~~l~----~~~~~~~~l~~~~~~LkpgG-~lv~ 216 (428)
++|+|+|......-. +...+. +|.-+.++|+||| .+++
T Consensus 139 ~~DvVLSDMAPnSG~~~vD~~Rs~~-aL~~A~~~Lk~gG~~Fvv 181 (269)
T 2px2_A 139 ISDTLLCDIGESSPSAEIEEQRTLR-ILEMVSDWLSRGPKEFCI 181 (269)
T ss_dssp CCSEEEECCCCCCSCHHHHHHHHHH-HHHHHHHHHTTCCSEEEE
T ss_pred CCCEEEeCCCCCCCccHHHHHHHHH-HHHHHHHHhhcCCcEEEE
Confidence 899999975322111 111122 5666678999999 7774
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=97.93 E-value=1.3e-05 Score=74.43 Aligned_cols=78 Identities=21% Similarity=0.268 Sum_probs=63.3
Q ss_pred HHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC-----C
Q 014247 103 AIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI-----D 176 (428)
Q Consensus 103 ~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~-----~ 176 (428)
.+.+.+...++..+||.+||.|..+..+++.+ .+|+|+|.+ .+++.|++ +.. ++++++++++.++.. .
T Consensus 13 e~le~L~~~~gg~~VD~T~G~GGHS~~il~~~-g~VigiD~Dp~Ai~~A~~-L~~----~rv~lv~~~f~~l~~~L~~~g 86 (285)
T 1wg8_A 13 EALDLLAVRPGGVYVDATLGGAGHARGILERG-GRVIGLDQDPEAVARAKG-LHL----PGLTVVQGNFRHLKRHLAALG 86 (285)
T ss_dssp HHHHHHTCCTTCEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHH-TCC----TTEEEEESCGGGHHHHHHHTT
T ss_pred HHHHhhCCCCCCEEEEeCCCCcHHHHHHHHCC-CEEEEEeCCHHHHHHHHh-hcc----CCEEEEECCcchHHHHHHHcC
Confidence 34445556788999999999999999999984 499999999 88888877 533 479999999988742 1
Q ss_pred -CceeEEEEec
Q 014247 177 -EEVDVIISEW 186 (428)
Q Consensus 177 -~~~DlVvs~~ 186 (428)
+++|.|+.++
T Consensus 87 ~~~vDgIL~DL 97 (285)
T 1wg8_A 87 VERVDGILADL 97 (285)
T ss_dssp CSCEEEEEEEC
T ss_pred CCCcCEEEeCC
Confidence 5799999875
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00017 Score=70.36 Aligned_cols=151 Identities=18% Similarity=0.195 Sum_probs=84.3
Q ss_pred CCEEEEEcCCCcHHHHHHHHc------------------CCCeEEEEeCh--HHHHH------HHHH-HHHCCCCCcEEE
Q 014247 113 GKVVVDVGCGTGILSIFCAQA------------------GAKRVYAVDAS--DIAVQ------ANEV-VKANNLTDKVIV 165 (428)
Q Consensus 113 ~~~VLDiGcGtG~ls~~la~~------------------g~~~V~giD~s--~~~~~------a~~~-~~~~~~~~~v~~ 165 (428)
..+|+|+||++|..++.+... ..-+|+..|+. ..-.. ..+. .+..+...+..|
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 579999999999988877654 11167777865 22111 1111 122232122466
Q ss_pred EEcccccc---cC-CCceeEEEEecchhhhcchh---------------------------------------hHHHHHH
Q 014247 166 LHGRVEDV---EI-DEEVDVIISEWMGYMLLYES---------------------------------------MLGSVIT 202 (428)
Q Consensus 166 ~~~d~~~l---~~-~~~~DlVvs~~~~~~l~~~~---------------------------------------~~~~~l~ 202 (428)
+.+..... .+ .+++|+|+|+. .++|.. |+..+|+
T Consensus 133 ~~gvpgSFy~rlfp~~S~d~v~Ss~---aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~ 209 (384)
T 2efj_A 133 IGAMPGSFYSRLFPEESMHFLHSCY---CLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLR 209 (384)
T ss_dssp EEECCSCTTSCCSCTTCEEEEEEES---CTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecchhhhhccCCCCceEEEEecc---eeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 66654442 23 38999999977 444422 2334488
Q ss_pred HHhcccccCeEEEccCCeeeEeecCCcc---chhhhh--------------h-hhhccCCCCcchhHHHHHhc-CCCCce
Q 014247 203 ARDRWLKRGGLILPSYATLYMAPVTHPD---RYSESI--------------D-FWRNVYGIDMSAMMPLAKQC-AFEEPS 263 (428)
Q Consensus 203 ~~~~~LkpgG~lv~~~~~~~~~~~~~~~---~~~~~~--------------~-~~~~~~~~~~~~l~~~l~~~-Gf~~~~ 263 (428)
.+.+.|+|||++++.....-.. ...+. ...... . +--..|..+.+++..+++++ +|....
T Consensus 210 ~Ra~eL~pGG~mvl~~~gr~~~-~~~~~~~~~l~~al~~lv~eGli~~ek~dsf~~P~y~ps~~E~~~~le~~g~F~i~~ 288 (384)
T 2efj_A 210 IHSEELISRGRMLLTFICKEDE-FDHPNSMDLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILY 288 (384)
T ss_dssp HHHHHEEEEEEEEEEEECCCTT-TCCCCHHHHHHHHHHHHHHHTSSCHHHHHTCCCSBCCCCHHHHHHHHHHHCSEEEEE
T ss_pred HHHHHhccCCeEEEEEecCCCc-ccCcccHHHHHHHHHHHHHhCCcchhhhcccCCcccCCCHHHHHHHHHHcCCceEEE
Confidence 8899999999998753211000 00000 111110 0 11124566788899999987 577666
Q ss_pred EEee
Q 014247 264 VETI 267 (428)
Q Consensus 264 ~~~~ 267 (428)
++.+
T Consensus 289 le~~ 292 (384)
T 2efj_A 289 LETF 292 (384)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6544
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=97.80 E-value=2.5e-05 Score=75.64 Aligned_cols=153 Identities=13% Similarity=0.130 Sum_probs=89.5
Q ss_pred CCCEEEEEcCCCcHHHHHHHHc------------C-----CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccc-
Q 014247 112 EGKVVVDVGCGTGILSIFCAQA------------G-----AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVED- 172 (428)
Q Consensus 112 ~~~~VLDiGcGtG~ls~~la~~------------g-----~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~- 172 (428)
...+|+|+||++|..++.+... + .-+|+..|+. +....+.+.+.......+..|+.+....
T Consensus 51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSF 130 (359)
T 1m6e_X 51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSF 130 (359)
T ss_dssp SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCS
T ss_pred CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhh
Confidence 3468999999999877654432 2 1278899988 6666655544321100123555554433
Q ss_pred --ccC-CCceeEEEEecchhhhcch---------------------------------hhHHHHHHHHhcccccCeEEEc
Q 014247 173 --VEI-DEEVDVIISEWMGYMLLYE---------------------------------SMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 173 --l~~-~~~~DlVvs~~~~~~l~~~---------------------------------~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
-.+ .+++|+|+|+. .++|. .|+..+|+.+.+.|+|||++++
T Consensus 131 y~rlfp~~S~d~v~Ss~---aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl 207 (359)
T 1m6e_X 131 YGRLFPRNTLHFIHSSY---SLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVL 207 (359)
T ss_dssp SSCCSCTTCBSCEEEES---CTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEE
T ss_pred hhccCCCCceEEEEehh---hhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEE
Confidence 233 38999999976 33332 2456679999999999999987
Q ss_pred cCCeeeEe-ecCC--ccchhhhhhhhh------------------ccCCCCcchhHHHHHhcC-CCCceEEee
Q 014247 217 SYATLYMA-PVTH--PDRYSESIDFWR------------------NVYGIDMSAMMPLAKQCA-FEEPSVETI 267 (428)
Q Consensus 217 ~~~~~~~~-~~~~--~~~~~~~~~~~~------------------~~~~~~~~~l~~~l~~~G-f~~~~~~~~ 267 (428)
.....-.. +... ...+......|. ..|..+.+++..++++.| |....++.+
T Consensus 208 ~~~gr~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~ek~d~f~~P~y~ps~~E~~~~ie~~G~F~i~~~e~~ 280 (359)
T 1m6e_X 208 TILGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIEAS 280 (359)
T ss_dssp EEEECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEEEEE
T ss_pred EEecCCCCCccccchHHHHHHHHHHHHHHHHccccchhhhhccCCCccCCCHHHHHHHHHHcCCceEEEEEEE
Confidence 53211100 0000 011222222221 235566788999998884 566655544
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=97.68 E-value=0.0001 Score=69.75 Aligned_cols=57 Identities=28% Similarity=0.279 Sum_probs=47.4
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHC
Q 014247 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKAN 157 (428)
Q Consensus 99 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~ 157 (428)
.+.+.+.+... .++.+|||++||+|..+..+++.|. +++|+|++ .+++.|++++...
T Consensus 223 ~l~~~~i~~~~-~~~~~vlD~f~GsGt~~~~a~~~g~-~~~g~e~~~~~~~~a~~r~~~~ 280 (297)
T 2zig_A 223 ELAERLVRMFS-FVGDVVLDPFAGTGTTLIAAARWGR-RALGVELVPRYAQLAKERFARE 280 (297)
T ss_dssp HHHHHHHHHHC-CTTCEEEETTCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHHh
Confidence 44444545444 6889999999999999999999876 89999999 9999999988764
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00013 Score=67.42 Aligned_cols=106 Identities=18% Similarity=0.124 Sum_probs=68.1
Q ss_pred HHHHHHHHHh-ccCCCCCCEEEEEcC------CCcHHHHHHHHcCCC--eEEEEeChHHHHHHHHHHHHCCCCCcEEEEE
Q 014247 97 TETYRAAIMQ-NQSFIEGKVVVDVGC------GTGILSIFCAQAGAK--RVYAVDASDIAVQANEVVKANNLTDKVIVLH 167 (428)
Q Consensus 97 ~~~~~~~i~~-~~~~~~~~~VLDiGc------GtG~ls~~la~~g~~--~V~giD~s~~~~~a~~~~~~~~~~~~v~~~~ 167 (428)
+.++.+.+.. .+....+.+|||+|+ -.|. ..+.+.+.+ .|+++|+.++.. ..+ .+++
T Consensus 93 ytqlcqyl~~~~~~vp~gmrVLDLGA~s~kg~APGS--~VLr~~~p~g~~VVavDL~~~~s----------da~--~~Iq 158 (344)
T 3r24_A 93 YTQLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDFVS----------DAD--STLI 158 (344)
T ss_dssp HHHHHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCCBC----------SSS--EEEE
T ss_pred HHHHHHHhccccEeecCCCEEEeCCCCCCCCCCCcH--HHHHHhCCCCcEEEEeeCccccc----------CCC--eEEE
Confidence 3344444422 234457899999997 4455 334444433 899999985531 112 4599
Q ss_pred cccccccCCCceeEEEEecchhh---hcc-----hhhHHHHHHHHhcccccCeEEEc
Q 014247 168 GRVEDVEIDEEVDVIISEWMGYM---LLY-----ESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 168 ~d~~~l~~~~~~DlVvs~~~~~~---l~~-----~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
+|...+....+||+|+|..-... ... ....+.++.-+.+.|+|||.+++
T Consensus 159 GD~~~~~~~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvV 215 (344)
T 3r24_A 159 GDCATVHTANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAV 215 (344)
T ss_dssp SCGGGEEESSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEE
T ss_pred ccccccccCCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEE
Confidence 99887766789999999752111 111 12356677777889999999985
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00032 Score=71.86 Aligned_cols=89 Identities=15% Similarity=0.120 Sum_probs=65.8
Q ss_pred HHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc----C----------CCeEEEEeCh-HHHHHHHHHHHHCCCCCc
Q 014247 98 ETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA----G----------AKRVYAVDAS-DIAVQANEVVKANNLTDK 162 (428)
Q Consensus 98 ~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~----g----------~~~V~giD~s-~~~~~a~~~~~~~~~~~~ 162 (428)
....+.+.+.+...++.+|+|-.||+|.+...+.+. . ...++|+|++ .+...|+-++--++...
T Consensus 203 ~~Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~- 281 (530)
T 3ufb_A 203 RPVVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEY- 281 (530)
T ss_dssp HHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSC-
T ss_pred HHHHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCcc-
Confidence 355666777777778889999999999998777653 1 1369999999 88888888777777653
Q ss_pred EEEEEcccccccC-----CCceeEEEEecc
Q 014247 163 VIVLHGRVEDVEI-----DEEVDVIISEWM 187 (428)
Q Consensus 163 v~~~~~d~~~l~~-----~~~~DlVvs~~~ 187 (428)
..+..+|....+. ..+||+|++++.
T Consensus 282 ~~I~~~dtL~~~~~~~~~~~~fD~Il~NPP 311 (530)
T 3ufb_A 282 PRIDPENSLRFPLREMGDKDRVDVILTNPP 311 (530)
T ss_dssp CEEECSCTTCSCGGGCCGGGCBSEEEECCC
T ss_pred ccccccccccCchhhhcccccceEEEecCC
Confidence 4667777654322 257999999984
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00089 Score=64.63 Aligned_cols=80 Identities=13% Similarity=0.066 Sum_probs=58.9
Q ss_pred hhhhccChhhHHHHHHHHHhccCCC------CCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCC
Q 014247 87 HEEMIKDRVRTETYRAAIMQNQSFI------EGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANN 158 (428)
Q Consensus 87 ~~~~~~d~~r~~~~~~~i~~~~~~~------~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~ 158 (428)
.+.++.|..-.+.+.+++ ... ++..|||||.|.|.++..+++. .+++|+++|++ .++...++.. .
T Consensus 31 GQnFL~d~~i~~~Iv~~~----~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-~-- 103 (353)
T 1i4w_A 31 GFKYLWNPTVYNKIFDKL----DLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-E-- 103 (353)
T ss_dssp GCCCBCCHHHHHHHHHHH----CGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-T--
T ss_pred CcCccCCHHHHHHHHHhc----cCCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-c--
Confidence 344566655544444444 323 4689999999999999999986 45699999999 8888777665 2
Q ss_pred CCCcEEEEEccccccc
Q 014247 159 LTDKVIVLHGRVEDVE 174 (428)
Q Consensus 159 ~~~~v~~~~~d~~~l~ 174 (428)
.++++++++|+.++.
T Consensus 104 -~~~l~ii~~D~l~~~ 118 (353)
T 1i4w_A 104 -GSPLQILKRDPYDWS 118 (353)
T ss_dssp -TSSCEEECSCTTCHH
T ss_pred -CCCEEEEECCccchh
Confidence 257999999996653
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0012 Score=60.99 Aligned_cols=58 Identities=22% Similarity=0.280 Sum_probs=46.4
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCC
Q 014247 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANN 158 (428)
Q Consensus 99 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~ 158 (428)
.+.+.+.+... .++..|||..||+|..+..+++.|. +++|+|++ ..++.|+++++.++
T Consensus 200 ~l~~~~i~~~~-~~~~~vlD~f~GsGtt~~~a~~~gr-~~ig~e~~~~~~~~~~~r~~~~~ 258 (260)
T 1g60_A 200 DLIERIIRASS-NPNDLVLDCFMGSGTTAIVAKKLGR-NFIGCDMNAEYVNQANFVLNQLE 258 (260)
T ss_dssp HHHHHHHHHHC-CTTCEEEESSCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHhcc
Confidence 44444444433 6889999999999999999999876 99999999 89999999987654
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00037 Score=64.74 Aligned_cols=108 Identities=15% Similarity=0.018 Sum_probs=76.7
Q ss_pred HHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccc-c--
Q 014247 98 ETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVED-V-- 173 (428)
Q Consensus 98 ~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~-l-- 173 (428)
..|.+.|... .+..+||+=+|||.+++.+.+. .++++.+|.+ ..+...++++.. .+++++++.|... +
T Consensus 81 ~~yf~~l~~~----n~~~~LDlfaGSGaLgiEaLS~-~d~~vfvE~~~~a~~~L~~Nl~~---~~~~~V~~~D~~~~L~~ 152 (283)
T 2oo3_A 81 LEYISVIKQI----NLNSTLSYYPGSPYFAINQLRS-QDRLYLCELHPTEYNFLLKLPHF---NKKVYVNHTDGVSKLNA 152 (283)
T ss_dssp HHHHHHHHHH----SSSSSCCEEECHHHHHHHHSCT-TSEEEEECCSHHHHHHHTTSCCT---TSCEEEECSCHHHHHHH
T ss_pred HHHHHHHHHh----cCCCceeEeCCcHHHHHHHcCC-CCeEEEEeCCHHHHHHHHHHhCc---CCcEEEEeCcHHHHHHH
Confidence 3566666552 3556899999999999999984 5899999999 777666666543 3579999999644 2
Q ss_pred --cCCCceeEEEEecchhhhcchhhHHHHHHHHhc--ccccCeEEEc
Q 014247 174 --EIDEEVDVIISEWMGYMLLYESMLGSVITARDR--WLKRGGLILP 216 (428)
Q Consensus 174 --~~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~--~LkpgG~lv~ 216 (428)
+...+||+|+..+. +....+...++..+.+ .+.|+|++++
T Consensus 153 l~~~~~~fdLVfiDPP---Ye~k~~~~~vl~~L~~~~~r~~~Gi~v~ 196 (283)
T 2oo3_A 153 LLPPPEKRGLIFIDPS---YERKEEYKEIPYAIKNAYSKFSTGLYCV 196 (283)
T ss_dssp HCSCTTSCEEEEECCC---CCSTTHHHHHHHHHHHHHHHCTTSEEEE
T ss_pred hcCCCCCccEEEECCC---CCCCcHHHHHHHHHHHhCccCCCeEEEE
Confidence 22357999999872 2222345566655543 5678998874
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0031 Score=59.87 Aligned_cols=80 Identities=16% Similarity=0.231 Sum_probs=62.2
Q ss_pred HHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC---
Q 014247 102 AAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-G-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI--- 175 (428)
Q Consensus 102 ~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~--- 175 (428)
+.+.+.+...+|..++|..||.|..+..+++. + ..+|+|+|.+ .+++.|+ ++ ..+++++++++..++..
T Consensus 47 ~Evl~~L~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL----~~~Rv~lv~~nF~~l~~~L~ 121 (347)
T 3tka_A 47 DEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI----DDPRFSIIHGPFSALGEYVA 121 (347)
T ss_dssp HHHHHHTCCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC----CCTTEEEEESCGGGHHHHHH
T ss_pred HHHHHhhCCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh----cCCcEEEEeCCHHHHHHHHH
Confidence 34455566788999999999999999999986 3 4599999999 7887774 32 24689999999887632
Q ss_pred ----CCceeEEEEec
Q 014247 176 ----DEEVDVIISEW 186 (428)
Q Consensus 176 ----~~~~DlVvs~~ 186 (428)
.+++|.|+.++
T Consensus 122 ~~g~~~~vDgILfDL 136 (347)
T 3tka_A 122 ERDLIGKIDGILLDL 136 (347)
T ss_dssp HTTCTTCEEEEEEEC
T ss_pred hcCCCCcccEEEECC
Confidence 13699999875
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0077 Score=57.75 Aligned_cols=119 Identities=18% Similarity=0.195 Sum_probs=81.4
Q ss_pred hhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeChHHHHHHHHHHHHCC---------------
Q 014247 95 VRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDASDIAVQANEVVKANN--------------- 158 (428)
Q Consensus 95 ~r~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s~~~~~a~~~~~~~~--------------- 158 (428)
.|...+.+.+.+.+...+...|+.+|||.......+... +..+++-||..++++.-++.+...+
T Consensus 80 ~Rt~~iD~~v~~fl~~~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~ 159 (334)
T 1rjd_A 80 LRTVGIDAAILEFLVANEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAK 159 (334)
T ss_dssp HHHHHHHHHHHHHHHHCSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCC
T ss_pred HHHHHHHHHHHHHHHHCCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccc
Confidence 455555566555543345679999999999999888874 2236666776666666666666542
Q ss_pred -----CCCcEEEEEccccccc----------CCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEE
Q 014247 159 -----LTDKVIVLHGRVEDVE----------IDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLIL 215 (428)
Q Consensus 159 -----~~~~v~~~~~d~~~l~----------~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv 215 (428)
..++..++.+|+.+.. .+....+++++.+..++. ......+++.+...+ |+|.++
T Consensus 160 ~~~~~~~~~~~~v~~DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~-~~~~~~ll~~ia~~~-~~~~~v 229 (334)
T 1rjd_A 160 SPFLIDQGRYKLAACDLNDITETTRLLDVCTKREIPTIVISECLLCYMH-NNESQLLINTIMSKF-SHGLWI 229 (334)
T ss_dssp TTEEEECSSEEEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSC-HHHHHHHHHHHHHHC-SSEEEE
T ss_pred cccccCCCceEEEecCCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCC-HHHHHHHHHHHHhhC-CCcEEE
Confidence 1357899999988731 125678999998654443 445888888888766 777665
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=96.38 E-value=0.02 Score=53.82 Aligned_cols=129 Identities=11% Similarity=0.087 Sum_probs=75.9
Q ss_pred CCCEEEEEcCCCcHHHHHHHH----cCC-C--eEEEEeCh----------HHHHHHHHHHHHCC-C-CC--cEEEEEccc
Q 014247 112 EGKVVVDVGCGTGILSIFCAQ----AGA-K--RVYAVDAS----------DIAVQANEVVKANN-L-TD--KVIVLHGRV 170 (428)
Q Consensus 112 ~~~~VLDiGcGtG~ls~~la~----~g~-~--~V~giD~s----------~~~~~a~~~~~~~~-~-~~--~v~~~~~d~ 170 (428)
+.-+|||+|-|+|...+.+.+ .+. . +++++|.. .............. + .+ .++++.+|+
T Consensus 96 ~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa 175 (308)
T 3vyw_A 96 KVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDA 175 (308)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCH
T ss_pred CCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechH
Confidence 346899999999986544332 222 2 56677741 11122222222211 0 11 356788898
Q ss_pred ccc-c-CC-CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhhccCCCCc
Q 014247 171 EDV-E-ID-EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDM 247 (428)
Q Consensus 171 ~~l-~-~~-~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (428)
.+. + ++ .+||+|+-..++-.-..+---+.+++.++++++|||+++--+ ..
T Consensus 176 ~~~l~~l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~laTYt---------------------------aa 228 (308)
T 3vyw_A 176 RKRIKEVENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWVSYS---------------------------SS 228 (308)
T ss_dssp HHHGGGCCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEEESC---------------------------CC
T ss_pred HHHHhhhcccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEEEEe---------------------------Cc
Confidence 663 2 23 479999987643222222224688999999999999987211 11
Q ss_pred chhHHHHHhcCCCCceEEee
Q 014247 248 SAMMPLAKQCAFEEPSVETI 267 (428)
Q Consensus 248 ~~l~~~l~~~Gf~~~~~~~~ 267 (428)
..++..|.++||.+..+.-+
T Consensus 229 g~VRR~L~~aGF~V~k~~G~ 248 (308)
T 3vyw_A 229 LSVRKSLLTLGFKVGSSREI 248 (308)
T ss_dssp HHHHHHHHHTTCEEEEEECC
T ss_pred HHHHHHHHHCCCEEEecCCC
Confidence 34677789999986554433
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0026 Score=61.88 Aligned_cols=96 Identities=21% Similarity=0.272 Sum_probs=62.7
Q ss_pred hccCCCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccc----cc--CC
Q 014247 106 QNQSFIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVED----VE--ID 176 (428)
Q Consensus 106 ~~~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~----l~--~~ 176 (428)
+.....++++||-+|+|. |.++..+|+. |+++|+++|.+ +..+.+++. |.. .++..+-.+ +. ..
T Consensus 184 ~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga~---~vi~~~~~~~~~~~~~~~~ 256 (371)
T 1f8f_A 184 NALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL----GAT---HVINSKTQDPVAAIKEITD 256 (371)
T ss_dssp TTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH----TCS---EEEETTTSCHHHHHHHHTT
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----CCC---EEecCCccCHHHHHHHhcC
Confidence 445567899999999986 7777777775 88789999998 766666543 321 223221111 10 11
Q ss_pred CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 177 EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 177 ~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
+.+|+|+-.. + ....+....+.|+++|+++..
T Consensus 257 gg~D~vid~~-g--------~~~~~~~~~~~l~~~G~iv~~ 288 (371)
T 1f8f_A 257 GGVNFALEST-G--------SPEILKQGVDALGILGKIAVV 288 (371)
T ss_dssp SCEEEEEECS-C--------CHHHHHHHHHTEEEEEEEEEC
T ss_pred CCCcEEEECC-C--------CHHHHHHHHHHHhcCCEEEEe
Confidence 3799998643 1 123456677899999998754
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=96.10 E-value=0.01 Score=56.67 Aligned_cols=67 Identities=16% Similarity=0.229 Sum_probs=52.6
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC--CceeEEEEec
Q 014247 112 EGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID--EEVDVIISEW 186 (428)
Q Consensus 112 ~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~--~~~DlVvs~~ 186 (428)
.+.+|||+.||.|.+++.+.++|++.|.++|++ ..++..+.+.... . ++|+.++... ..+|+|+..+
T Consensus 10 ~~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~~~-----~---~~Di~~~~~~~~~~~D~l~~gp 79 (327)
T 2c7p_A 10 TGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEK-----P---EGDITQVNEKTIPDHDILCAGF 79 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCC-----C---BSCGGGSCGGGSCCCSEEEEEC
T ss_pred CCCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCC-----C---cCCHHHcCHhhCCCCCEEEECC
Confidence 457999999999999999999999889999999 6666666664221 1 6888876532 4699999865
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0097 Score=58.03 Aligned_cols=68 Identities=24% Similarity=0.176 Sum_probs=53.5
Q ss_pred CEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC---------CCceeEEE
Q 014247 114 KVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI---------DEEVDVII 183 (428)
Q Consensus 114 ~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~---------~~~~DlVv 183 (428)
.+|||+-||.|.+++-+.++|++.|.++|++ ..++..+.+. . ...++++|+.++.. ...+|+|+
T Consensus 3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N~-----~-~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~ 76 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINF-----P-RSLHVQEDVSLLNAEIIKGFFKNDMPIDGII 76 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHC-----T-TSEEECCCGGGCCHHHHHHHHCSCCCCCEEE
T ss_pred CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhC-----C-CCceEecChhhcCHHHHHhhcccCCCeeEEE
Confidence 5899999999999999999999888899999 6665555442 1 36788899988632 35799999
Q ss_pred Eecc
Q 014247 184 SEWM 187 (428)
Q Consensus 184 s~~~ 187 (428)
..+.
T Consensus 77 ggpP 80 (376)
T 3g7u_A 77 GGPP 80 (376)
T ss_dssp ECCC
T ss_pred ecCC
Confidence 8653
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0042 Score=59.84 Aligned_cols=68 Identities=16% Similarity=0.134 Sum_probs=53.3
Q ss_pred CEEEEEcCCCcHHHHHHHHcC--CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC----CceeEEEEec
Q 014247 114 KVVVDVGCGTGILSIFCAQAG--AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID----EEVDVIISEW 186 (428)
Q Consensus 114 ~~VLDiGcGtG~ls~~la~~g--~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~----~~~DlVvs~~ 186 (428)
.+|||+-||.|.+++.+.++| ++.|+++|++ ..++..+.+.. ...++++|+.++... ..+|+|+..+
T Consensus 3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~------~~~~~~~Di~~~~~~~~~~~~~D~l~~gp 76 (343)
T 1g55_A 3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP------HTQLLAKTIEGITLEEFDRLSFDMILMSP 76 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT------TSCEECSCGGGCCHHHHHHHCCSEEEECC
T ss_pred CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhcc------ccccccCCHHHccHhHcCcCCcCEEEEcC
Confidence 589999999999999999998 5689999999 77766666542 245778999887532 2699999865
Q ss_pred c
Q 014247 187 M 187 (428)
Q Consensus 187 ~ 187 (428)
.
T Consensus 77 P 77 (343)
T 1g55_A 77 P 77 (343)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.021 Score=55.99 Aligned_cols=102 Identities=18% Similarity=0.130 Sum_probs=63.1
Q ss_pred ccCCCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccc--------cC
Q 014247 107 NQSFIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDV--------EI 175 (428)
Q Consensus 107 ~~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l--------~~ 175 (428)
.....+|.+||.+|||. |.++..+|+. |+.+|+++|.+ +.++.+++ .|. .++..+-.++ ..
T Consensus 180 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa----~~i~~~~~~~~~~~~~~~~~ 251 (398)
T 2dph_A 180 SAGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSD----AGF----ETIDLRNSAPLRDQIDQILG 251 (398)
T ss_dssp HTTCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHT----TTC----EEEETTSSSCHHHHHHHHHS
T ss_pred HcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCC----cEEcCCCcchHHHHHHHHhC
Confidence 34567899999999986 7788888875 87799999998 66655543 333 2332211111 11
Q ss_pred CCceeEEEEecchhhhc-c-----hhhHHHHHHHHhcccccCeEEEcc
Q 014247 176 DEEVDVIISEWMGYMLL-Y-----ESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 176 ~~~~DlVvs~~~~~~l~-~-----~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
...+|+|+-.. +.... + .......+....++|++||+++..
T Consensus 252 g~g~Dvvid~~-g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~ 298 (398)
T 2dph_A 252 KPEVDCGVDAV-GFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIP 298 (398)
T ss_dssp SSCEEEEEECS-CTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECC
T ss_pred CCCCCEEEECC-CCccccccccccccccHHHHHHHHHHHhcCCEEEEe
Confidence 13699999743 11100 0 001223566677889999998754
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=95.90 E-value=0.02 Score=56.45 Aligned_cols=62 Identities=15% Similarity=0.175 Sum_probs=50.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHH-Hc-C-CCeEEEEeCh-HHHHHHHHHHHH--CCCC-CcEEEEEccccc
Q 014247 111 IEGKVVVDVGCGTGILSIFCA-QA-G-AKRVYAVDAS-DIAVQANEVVKA--NNLT-DKVIVLHGRVED 172 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la-~~-g-~~~V~giD~s-~~~~~a~~~~~~--~~~~-~~v~~~~~d~~~ 172 (428)
.++.+|+||||+.|..+..++ +. + ..+|+++|++ ...+..++++.. |+.. .++++++.-+.+
T Consensus 225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al~~ 293 (409)
T 2py6_A 225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGAGE 293 (409)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEECS
T ss_pred CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEEEC
Confidence 578999999999999999888 44 3 3699999999 888889998887 4433 678888776554
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=95.66 E-value=0.086 Score=49.84 Aligned_cols=122 Identities=11% Similarity=0.024 Sum_probs=83.0
Q ss_pred hhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeChHHHHHHHHHHHHCC--CCCcEEEEEccccc
Q 014247 95 VRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQANEVVKANN--LTDKVIVLHGRVED 172 (428)
Q Consensus 95 ~r~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s~~~~~a~~~~~~~~--~~~~v~~~~~d~~~ 172 (428)
.|...+.+.+...+... ...|++||||-=.....+......+|+-||...+++..++.+...+ ...+..++.+|+.+
T Consensus 86 ~Rt~~~d~~v~~~~~~g-~~QvV~LGaGlDTra~Rl~~~~~~~v~evD~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d 164 (310)
T 2uyo_A 86 VRTNFFDTYFNNAVIDG-IRQFVILASGLDSRAYRLDWPTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQ 164 (310)
T ss_dssp HHHHHHHHHHHHHHHTT-CCEEEEETCTTCCHHHHSCCCTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTS
T ss_pred HHHHHHHHHHHHHHHhC-CCeEEEeCCCCCchhhhccCCCCcEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEecchHh
Confidence 45555555665554322 2579999999876665554221247888886677888788877543 24578999999876
Q ss_pred ccC----------CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCC
Q 014247 173 VEI----------DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYA 219 (428)
Q Consensus 173 l~~----------~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 219 (428)
.. ....-+++++.+.+++.. .....+++.+...+.||+.+++...
T Consensus 165 -~~~~~l~~~g~d~~~Pt~~i~Egvl~Yl~~-~~~~~ll~~l~~~~~~gs~l~~d~~ 219 (310)
T 2uyo_A 165 -DWPPALRSAGFDPSARTAWLAEGLLMYLPA-TAQDGLFTEIGGLSAVGSRIAVETS 219 (310)
T ss_dssp -CHHHHHHHTTCCTTSCEEEEECSCGGGSCH-HHHHHHHHHHHHTCCTTCEEEEECC
T ss_pred -hHHHHHHhccCCCCCCEEEEEechHhhCCH-HHHHHHHHHHHHhCCCCeEEEEEec
Confidence 21 134557888876555544 4588899999998899999987654
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=95.40 E-value=0.024 Score=54.64 Aligned_cols=94 Identities=27% Similarity=0.330 Sum_probs=60.2
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcc---ccc----cc--C
Q 014247 108 QSFIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGR---VED----VE--I 175 (428)
Q Consensus 108 ~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d---~~~----l~--~ 175 (428)
....+|.+||-+|+|. |.++..+|+. |+++|+++|.+ +-.+.+++ .|.. .++..+ ..+ +. .
T Consensus 167 ~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~---~vi~~~~~~~~~~~~~i~~~~ 239 (356)
T 1pl8_A 167 GGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE----IGAD---LVLQISKESPQEIARKVEGQL 239 (356)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTCS---EEEECSSCCHHHHHHHHHHHH
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCC---EEEcCcccccchHHHHHHHHh
Confidence 4567899999999875 7777777775 77789999998 66655543 3432 223221 111 10 0
Q ss_pred CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 176 DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 176 ~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
...+|+|+-.. + . ...+....++|+++|+++..
T Consensus 240 ~~g~D~vid~~-g----~----~~~~~~~~~~l~~~G~iv~~ 272 (356)
T 1pl8_A 240 GCKPEVTIECT-G----A----EASIQAGIYATRSGGTLVLV 272 (356)
T ss_dssp TSCCSEEEECS-C----C----HHHHHHHHHHSCTTCEEEEC
T ss_pred CCCCCEEEECC-C----C----hHHHHHHHHHhcCCCEEEEE
Confidence 14699999642 1 1 22355666789999998854
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=95.33 E-value=0.058 Score=52.27 Aligned_cols=96 Identities=26% Similarity=0.358 Sum_probs=61.6
Q ss_pred hccCCCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEE---ccccc-c-----
Q 014247 106 QNQSFIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLH---GRVED-V----- 173 (428)
Q Consensus 106 ~~~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~---~d~~~-l----- 173 (428)
+.....+|.+||-+|+|. |.++..+|++ |+++|+++|.+ +-.+.+++. |.. .++. .|..+ +
T Consensus 176 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga~---~vi~~~~~~~~~~i~~~~~ 248 (370)
T 4ej6_A 176 DLSGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEV----GAT---ATVDPSAGDVVEAIAGPVG 248 (370)
T ss_dssp HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHH----TCS---EEECTTSSCHHHHHHSTTS
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----CCC---EEECCCCcCHHHHHHhhhh
Confidence 334567899999999875 6677777775 88799999999 666655543 332 2222 12111 1
Q ss_pred cCCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 174 EIDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 174 ~~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
...+.+|+|+-.. + -...+....++|++||+++..
T Consensus 249 ~~~gg~Dvvid~~-G--------~~~~~~~~~~~l~~~G~vv~~ 283 (370)
T 4ej6_A 249 LVPGGVDVVIECA-G--------VAETVKQSTRLAKAGGTVVIL 283 (370)
T ss_dssp SSTTCEEEEEECS-C--------CHHHHHHHHHHEEEEEEEEEC
T ss_pred ccCCCCCEEEECC-C--------CHHHHHHHHHHhccCCEEEEE
Confidence 1124799999632 1 123456677889999998854
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.33 E-value=0.047 Score=53.38 Aligned_cols=101 Identities=19% Similarity=0.193 Sum_probs=63.6
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccc-----ccc---cCC
Q 014247 108 QSFIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRV-----EDV---EID 176 (428)
Q Consensus 108 ~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~-----~~l---~~~ 176 (428)
....+|.+||-+|||. |.++..+|+. |+++|+++|.+ +-++.+++ .|. .++...- ..+ ...
T Consensus 181 ~~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~----lGa----~~i~~~~~~~~~~~v~~~t~g 252 (398)
T 1kol_A 181 AGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKA----QGF----EIADLSLDTPLHEQIAALLGE 252 (398)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTC----EEEETTSSSCHHHHHHHHHSS
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHH----cCC----cEEccCCcchHHHHHHHHhCC
Confidence 4567899999999875 7778788875 88789999999 66666643 343 2232111 111 112
Q ss_pred CceeEEEEecchhhh-------cchhhHHHHHHHHhcccccCeEEEcc
Q 014247 177 EEVDVIISEWMGYML-------LYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 177 ~~~DlVvs~~~~~~l-------~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
..+|+|+-.. +... .+..+....+....++|++||+++..
T Consensus 253 ~g~Dvvid~~-G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~ 299 (398)
T 1kol_A 253 PEVDCAVDAV-GFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP 299 (398)
T ss_dssp SCEEEEEECC-CTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred CCCCEEEECC-CCcccccccccccccchHHHHHHHHHHHhcCCEEEEe
Confidence 4799999743 2110 01112334567777899999998754
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=95.28 E-value=0.037 Score=53.40 Aligned_cols=97 Identities=23% Similarity=0.202 Sum_probs=62.4
Q ss_pred ccCCCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEE-----cccc----ccc
Q 014247 107 NQSFIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLH-----GRVE----DVE 174 (428)
Q Consensus 107 ~~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~-----~d~~----~l~ 174 (428)
.....+|++||-+|+|. |.++..+|+. |+++|+++|.+ +-.+.+++. .. ..+.+.. .|+. ++.
T Consensus 174 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-~~----~~~~~~~~~~~~~~~~~~v~~~t 248 (363)
T 3m6i_A 174 RAGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-CP----EVVTHKVERLSAEESAKKIVESF 248 (363)
T ss_dssp HHTCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-CT----TCEEEECCSCCHHHHHHHHHHHT
T ss_pred HcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-ch----hcccccccccchHHHHHHHHHHh
Confidence 34567899999999875 6777777776 88679999999 777777664 21 1122221 1111 111
Q ss_pred CCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 175 IDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 175 ~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
....+|+|+-.. . -...+....++|++||+++..
T Consensus 249 ~g~g~Dvvid~~-----g----~~~~~~~~~~~l~~~G~iv~~ 282 (363)
T 3m6i_A 249 GGIEPAVALECT-----G----VESSIAAAIWAVKFGGKVFVI 282 (363)
T ss_dssp SSCCCSEEEECS-----C----CHHHHHHHHHHSCTTCEEEEC
T ss_pred CCCCCCEEEECC-----C----ChHHHHHHHHHhcCCCEEEEE
Confidence 235799999643 1 123455667789999998854
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.27 E-value=0.017 Score=56.85 Aligned_cols=98 Identities=15% Similarity=0.074 Sum_probs=60.2
Q ss_pred CCCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccc-------ccCCCc
Q 014247 109 SFIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVED-------VEIDEE 178 (428)
Q Consensus 109 ~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~-------l~~~~~ 178 (428)
...+|.+||-+|+|. |.++..+|+. |+.+|+++|.+ .-.+.+++. |.. .++..+-.+ +.....
T Consensus 210 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~l----Ga~---~vi~~~~~~~~~~i~~~t~g~g 282 (404)
T 3ip1_A 210 GIRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKEL----GAD---HVIDPTKENFVEAVLDYTNGLG 282 (404)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHH----TCS---EEECTTTSCHHHHHHHHTTTCC
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----CCC---EEEcCCCCCHHHHHHHHhCCCC
Confidence 467899999999864 6667777775 88799999998 666666543 321 223221111 111247
Q ss_pred eeEEEEecchhhhcch-hhHHHHHHHHhcccccCeEEEccC
Q 014247 179 VDVIISEWMGYMLLYE-SMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 179 ~DlVvs~~~~~~l~~~-~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
+|+|+-.. ... .....+++.+.+.++++|+++...
T Consensus 283 ~D~vid~~-----g~~~~~~~~~~~~l~~~~~~~G~iv~~G 318 (404)
T 3ip1_A 283 AKLFLEAT-----GVPQLVWPQIEEVIWRARGINATVAIVA 318 (404)
T ss_dssp CSEEEECS-----SCHHHHHHHHHHHHHHCSCCCCEEEECS
T ss_pred CCEEEECC-----CCcHHHHHHHHHHHHhccCCCcEEEEeC
Confidence 99999632 111 123444444445669999988643
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=95.26 E-value=0.006 Score=58.83 Aligned_cols=96 Identities=22% Similarity=0.217 Sum_probs=61.8
Q ss_pred hccCCCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccc-------ccC
Q 014247 106 QNQSFIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVED-------VEI 175 (428)
Q Consensus 106 ~~~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~-------l~~ 175 (428)
+.....+|.+||-+|+|. |.++..+|+. |+.+|+++|.+ +-.+.+++. |.. .++..+-.+ +..
T Consensus 160 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~l----Ga~---~vi~~~~~~~~~~v~~~t~ 232 (352)
T 3fpc_A 160 ELANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEY----GAT---DIINYKNGDIVEQILKATD 232 (352)
T ss_dssp HHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHH----TCC---EEECGGGSCHHHHHHHHTT
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----CCc---eEEcCCCcCHHHHHHHHcC
Confidence 345567899999999875 7777778876 77789999998 666666543 332 223221111 111
Q ss_pred CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 176 DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 176 ~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
...+|+|+-.. .. ...+....+.|++||+++..
T Consensus 233 g~g~D~v~d~~-----g~----~~~~~~~~~~l~~~G~~v~~ 265 (352)
T 3fpc_A 233 GKGVDKVVIAG-----GD----VHTFAQAVKMIKPGSDIGNV 265 (352)
T ss_dssp TCCEEEEEECS-----SC----TTHHHHHHHHEEEEEEEEEC
T ss_pred CCCCCEEEECC-----CC----hHHHHHHHHHHhcCCEEEEe
Confidence 24699999632 11 13455666789999998854
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=95.18 E-value=0.052 Score=51.25 Aligned_cols=90 Identities=18% Similarity=0.105 Sum_probs=58.9
Q ss_pred hccCCCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEE
Q 014247 106 QNQSFIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVI 182 (428)
Q Consensus 106 ~~~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlV 182 (428)
+.....+|.+||-+|+|. |.++..+|+. |+ +|++++ + +-.+.+++. |. -.++. |..++ ...+|+|
T Consensus 136 ~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga-~Vi~~~-~~~~~~~~~~l----Ga---~~v~~-d~~~v--~~g~Dvv 203 (315)
T 3goh_A 136 EKIPLTKQREVLIVGFGAVNNLLTQMLNNAGY-VVDLVS-ASLSQALAAKR----GV---RHLYR-EPSQV--TQKYFAI 203 (315)
T ss_dssp TTSCCCSCCEEEEECCSHHHHHHHHHHHHHTC-EEEEEC-SSCCHHHHHHH----TE---EEEES-SGGGC--CSCEEEE
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEE-ChhhHHHHHHc----CC---CEEEc-CHHHh--CCCccEE
Confidence 555678899999999963 6777777776 88 999999 7 666666542 32 12232 43334 5789999
Q ss_pred EEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 183 ISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 183 vs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
+-.. + .. . +....++|+++|+++..
T Consensus 204 ~d~~-g----~~----~-~~~~~~~l~~~G~~v~~ 228 (315)
T 3goh_A 204 FDAV-N----SQ----N-AAALVPSLKANGHIICI 228 (315)
T ss_dssp ECC-----------------TTGGGEEEEEEEEEE
T ss_pred EECC-C----ch----h-HHHHHHHhcCCCEEEEE
Confidence 8532 1 11 1 24557889999988754
|
| >3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A* | Back alignment and structure |
|---|
Probab=95.06 E-value=0.68 Score=44.04 Aligned_cols=163 Identities=13% Similarity=0.156 Sum_probs=94.1
Q ss_pred hhHHHHHHHHHhccCCC-CCCEEEEEcCCCcHHHHHHHHcC--CCeEEEEeChHHHHHHHHHHHHCC-------------
Q 014247 95 VRTETYRAAIMQNQSFI-EGKVVVDVGCGTGILSIFCAQAG--AKRVYAVDASDIAVQANEVVKANN------------- 158 (428)
Q Consensus 95 ~r~~~~~~~i~~~~~~~-~~~~VLDiGcGtG~ls~~la~~g--~~~V~giD~s~~~~~a~~~~~~~~------------- 158 (428)
.|...+.+.+.+.+... +...|+-+|||.=.....+...+ ..+++=||..++++.=++.+...+
T Consensus 72 ~Rt~~iD~~v~~fl~~~~~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~P~vi~~K~~~l~~~~~l~~~lg~~~~~~ 151 (334)
T 3iei_A 72 ARVHGVSQLIKAFLRKTECHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDFPMIVTRKLHSIKCKPPLSSPILELHSED 151 (334)
T ss_dssp HHHHHHHHHHHHHHHHTTTCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEECHHHHHHHHHHHHHCHHHHHHHHHHSSSS
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCcHHHHHHHHHHHhhchhhhhhhccccccc
Confidence 45555556665555433 46799999999988887777642 236666666655554444444311
Q ss_pred ---------CCCcEEEEEccccccc----------C-CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccC
Q 014247 159 ---------LTDKVIVLHGRVEDVE----------I-DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 159 ---------~~~~v~~~~~d~~~l~----------~-~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
..++..++.+|+.+.. + +...-+++++.+..++ .......+++.+.... |+|.++.
T Consensus 152 ~~~~~~~~l~s~~y~~v~~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL-~~~~~~~ll~~ia~~f-~~~~~i~-- 227 (334)
T 3iei_A 152 TLQMDGHILDSKRYAVIGADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYM-TPEQSANLLKWAANSF-ERAMFIN-- 227 (334)
T ss_dssp SCBCCTTEEECSSEEEEECCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGS-CHHHHHHHHHHHHHHC-SSEEEEE--
T ss_pred ccccccccCCCCceEEEccccccchhHHHHHHhcCCCCCCCEEEEEchhhhCC-CHHHHHHHHHHHHHhC-CCceEEE--
Confidence 1456899999987631 1 2456689998865444 3455888888887765 4555543
Q ss_pred CeeeEeecCCccchhhh-hhhhh----ccCC----CCcchhHHHHHhcCCCCceEE
Q 014247 219 ATLYMAPVTHPDRYSES-IDFWR----NVYG----IDMSAMMPLAKQCAFEEPSVE 265 (428)
Q Consensus 219 ~~~~~~~~~~~~~~~~~-~~~~~----~~~~----~~~~~l~~~l~~~Gf~~~~~~ 265 (428)
..++...+.+... ..-+. ...+ .+.....+.+.++||..+.+.
T Consensus 228 ----yE~i~p~d~fg~~M~~~l~~~g~pl~sl~~y~t~~~~~~r~~~~Gw~~~~~~ 279 (334)
T 3iei_A 228 ----YEQVNMGDRFGQIMIENLRRRQCDLAGVETCKSLESQKERLLSNGWETASAV 279 (334)
T ss_dssp ----EEECCTTSHHHHHHHHHHHTTTCCCTTGGGGGCHHHHHHHHHTTTCSEEEEE
T ss_pred ----EeccCCCCHHHHHHHHHHHHhCCCCcccccCCCHHHHHHHHHHcCCCcceee
Confidence 1233222222111 01111 0112 234556778889999876544
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=94.94 E-value=0.21 Score=45.67 Aligned_cols=103 Identities=18% Similarity=0.253 Sum_probs=68.0
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc--------CCCeEEEEeCh-HH------------------------HHHHHHHHH--
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQA--------GAKRVYAVDAS-DI------------------------AVQANEVVK-- 155 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~--------g~~~V~giD~s-~~------------------------~~~a~~~~~-- 155 (428)
.+| .|+|+||-.|..+..++.. ..++|+++|.- .+ .+..++.+.
T Consensus 69 vpG-~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~ 147 (257)
T 3tos_A 69 VPG-VIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAH 147 (257)
T ss_dssp SCS-EEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHH
T ss_pred CCC-eEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHH
Confidence 444 8999999999988776652 13699999921 11 111222211
Q ss_pred ----HCCC-CCcEEEEEccccccc------CC-CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCC
Q 014247 156 ----ANNL-TDKVIVLHGRVEDVE------ID-EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYA 219 (428)
Q Consensus 156 ----~~~~-~~~v~~~~~d~~~l~------~~-~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 219 (428)
..+. .++|+++.+++.+.- .+ .++|+|+... -. +. .....+..+..+|+|||++++...
T Consensus 148 ~~~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~---D~-Y~-~t~~~le~~~p~l~~GGvIv~DD~ 218 (257)
T 3tos_A 148 ECSDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDL---DL-YE-PTKAVLEAIRPYLTKGSIVAFDEL 218 (257)
T ss_dssp HTTSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECC---CC-HH-HHHHHHHHHGGGEEEEEEEEESST
T ss_pred hhhhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcC---cc-cc-hHHHHHHHHHHHhCCCcEEEEcCC
Confidence 2233 478999999987631 12 5799999864 11 22 245678888899999999998764
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=94.78 E-value=0.051 Score=52.09 Aligned_cols=89 Identities=21% Similarity=0.181 Sum_probs=60.1
Q ss_pred CCCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEEe
Q 014247 109 SFIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISE 185 (428)
Q Consensus 109 ~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~ 185 (428)
...+|.+||-+|+|. |.++..+|+. |+ +|++++.+ +-.+.+++ .|.. .++ .+...+. ..+|+|+-.
T Consensus 173 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~---~v~-~~~~~~~--~~~D~vid~ 241 (348)
T 3two_A 173 KVTKGTKVGVAGFGGLGSMAVKYAVAMGA-EVSVFARNEHKKQDALS----MGVK---HFY-TDPKQCK--EELDFIIST 241 (348)
T ss_dssp TCCTTCEEEEESCSHHHHHHHHHHHHTTC-EEEEECSSSTTHHHHHH----TTCS---EEE-SSGGGCC--SCEEEEEEC
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHh----cCCC---eec-CCHHHHh--cCCCEEEEC
Confidence 567899999999875 7777777775 77 89999998 66665543 3432 222 4443333 489999963
Q ss_pred cchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 186 WMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 186 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
. ... ..+....++|+++|+++..
T Consensus 242 ~-----g~~----~~~~~~~~~l~~~G~iv~~ 264 (348)
T 3two_A 242 I-----PTH----YDLKDYLKLLTYNGDLALV 264 (348)
T ss_dssp C-----CSC----CCHHHHHTTEEEEEEEEEC
T ss_pred C-----CcH----HHHHHHHHHHhcCCEEEEE
Confidence 2 111 1245566889999998854
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=94.70 E-value=0.071 Score=51.72 Aligned_cols=97 Identities=23% Similarity=0.273 Sum_probs=62.2
Q ss_pred HHhccCCCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcc-----cc----
Q 014247 104 IMQNQSFIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGR-----VE---- 171 (428)
Q Consensus 104 i~~~~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d-----~~---- 171 (428)
+.+.....++.+||-+|+|. |.++..+|+. |+++|+++|.+ +-++.+++ .|.. .++... +.
T Consensus 185 l~~~~~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~----lGa~---~vi~~~~~~~~~~~~i~ 257 (378)
T 3uko_A 185 VWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKK----FGVN---EFVNPKDHDKPIQEVIV 257 (378)
T ss_dssp HHTTTCCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHT----TTCC---EEECGGGCSSCHHHHHH
T ss_pred HHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCc---EEEccccCchhHHHHHH
Confidence 34445667899999999974 7777777776 88789999988 66665543 3432 222211 11
Q ss_pred cccCCCceeEEEEecchhhhcchhhHHHHHHHHhcccccC-eEEEcc
Q 014247 172 DVEIDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRG-GLILPS 217 (428)
Q Consensus 172 ~l~~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~lv~~ 217 (428)
++. .+.+|+|+-.. + -...+....+.|++| |+++..
T Consensus 258 ~~~-~gg~D~vid~~-g--------~~~~~~~~~~~l~~g~G~iv~~ 294 (378)
T 3uko_A 258 DLT-DGGVDYSFECI-G--------NVSVMRAALECCHKGWGTSVIV 294 (378)
T ss_dssp HHT-TSCBSEEEECS-C--------CHHHHHHHHHTBCTTTCEEEEC
T ss_pred Hhc-CCCCCEEEECC-C--------CHHHHHHHHHHhhccCCEEEEE
Confidence 111 24799999632 1 123456677889996 988754
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=94.66 E-value=0.024 Score=49.57 Aligned_cols=94 Identities=20% Similarity=0.251 Sum_probs=56.7
Q ss_pred HHhccCCCCCCEEEEEcC--CCcHHHHHHHH-cCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccc------
Q 014247 104 IMQNQSFIEGKVVVDVGC--GTGILSIFCAQ-AGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDV------ 173 (428)
Q Consensus 104 i~~~~~~~~~~~VLDiGc--GtG~ls~~la~-~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l------ 173 (428)
+.+.....++++||..|+ |.|.....+++ .|+ +|+++|.+ +..+.+++ .+.. . ++ |..+.
T Consensus 30 l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~~~----~g~~--~-~~--d~~~~~~~~~~ 99 (198)
T 1pqw_A 30 LCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLSR----LGVE--Y-VG--DSRSVDFADEI 99 (198)
T ss_dssp HHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHT----TCCS--E-EE--ETTCSTHHHHH
T ss_pred HHHHhCCCCCCEEEEeeCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----cCCC--E-Ee--eCCcHHHHHHH
Confidence 334445678999999995 34555544444 477 89999998 65554432 3321 1 22 22111
Q ss_pred ---cCCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 174 ---EIDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 174 ---~~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
.....+|+|+.+. + . ..+....+.|++||+++.-
T Consensus 100 ~~~~~~~~~D~vi~~~-g-----~----~~~~~~~~~l~~~G~~v~~ 136 (198)
T 1pqw_A 100 LELTDGYGVDVVLNSL-A-----G----EAIQRGVQILAPGGRFIEL 136 (198)
T ss_dssp HHHTTTCCEEEEEECC-C-----T----HHHHHHHHTEEEEEEEEEC
T ss_pred HHHhCCCCCeEEEECC-c-----h----HHHHHHHHHhccCCEEEEE
Confidence 1124699999643 1 1 2456677889999988753
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=94.63 E-value=0.012 Score=56.29 Aligned_cols=96 Identities=17% Similarity=0.153 Sum_probs=59.3
Q ss_pred HHhccCCCCCCEEEEEcCC--CcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccc-------
Q 014247 104 IMQNQSFIEGKVVVDVGCG--TGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVED------- 172 (428)
Q Consensus 104 i~~~~~~~~~~~VLDiGcG--tG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~------- 172 (428)
+.+.....++++||-+|+| .|.++..+++. |+ +|++++.+ +-++.+++. +.. .++...-.+
T Consensus 136 ~~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~l----ga~---~~~~~~~~~~~~~~~~ 207 (340)
T 3gms_A 136 CTETLNLQRNDVLLVNACGSAIGHLFAQLSQILNF-RLIAVTRNNKHTEELLRL----GAA---YVIDTSTAPLYETVME 207 (340)
T ss_dssp HHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHH----TCS---EEEETTTSCHHHHHHH
T ss_pred HHHhcccCCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhC----CCc---EEEeCCcccHHHHHHH
Confidence 3345567889999999997 46666666665 88 89999998 766666552 321 222211111
Q ss_pred ccCCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 173 VEIDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 173 l~~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
+.....+|+|+... + .. .+.. ..+.|+++|+++..
T Consensus 208 ~~~~~g~Dvvid~~-g-----~~---~~~~-~~~~l~~~G~iv~~ 242 (340)
T 3gms_A 208 LTNGIGADAAIDSI-G-----GP---DGNE-LAFSLRPNGHFLTI 242 (340)
T ss_dssp HTTTSCEEEEEESS-C-----HH---HHHH-HHHTEEEEEEEEEC
T ss_pred HhCCCCCcEEEECC-C-----Ch---hHHH-HHHHhcCCCEEEEE
Confidence 11124799999743 1 11 1222 33689999998854
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=94.58 E-value=0.046 Score=52.23 Aligned_cols=95 Identities=22% Similarity=0.189 Sum_probs=61.3
Q ss_pred hccCCCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc-----CCC
Q 014247 106 QNQSFIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE-----IDE 177 (428)
Q Consensus 106 ~~~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~-----~~~ 177 (428)
......++++||-+|+|. |.++..+|+. |+ +|+++|.+ +..+.+++ .|.. .++..+-.++. ..+
T Consensus 160 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~---~~i~~~~~~~~~~~~~~~g 231 (340)
T 3s2e_A 160 KVTDTRPGQWVVISGIGGLGHVAVQYARAMGL-RVAAVDIDDAKLNLARR----LGAE---VAVNARDTDPAAWLQKEIG 231 (340)
T ss_dssp HTTTCCTTSEEEEECCSTTHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH----TTCS---EEEETTTSCHHHHHHHHHS
T ss_pred HHcCCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHH----cCCC---EEEeCCCcCHHHHHHHhCC
Confidence 334567899999999975 8888888886 77 99999999 66665543 3432 22222111110 013
Q ss_pred ceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 178 EVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 178 ~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
.+|+|+-.. + -...++...+.|+++|+++..
T Consensus 232 ~~d~vid~~-g--------~~~~~~~~~~~l~~~G~iv~~ 262 (340)
T 3s2e_A 232 GAHGVLVTA-V--------SPKAFSQAIGMVRRGGTIALN 262 (340)
T ss_dssp SEEEEEESS-C--------CHHHHHHHHHHEEEEEEEEEC
T ss_pred CCCEEEEeC-C--------CHHHHHHHHHHhccCCEEEEe
Confidence 689988632 1 123456677889999998854
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=94.53 E-value=0.0091 Score=57.86 Aligned_cols=94 Identities=21% Similarity=0.187 Sum_probs=60.1
Q ss_pred hccCCCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccc-------ccC
Q 014247 106 QNQSFIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVED-------VEI 175 (428)
Q Consensus 106 ~~~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~-------l~~ 175 (428)
+.....+|.+||-+|+|. |.++..+|+. |+ +|++++.+ +-++.+++. |.. .++..+..+ +..
T Consensus 183 ~~~~~~~g~~VlV~G~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~l----Ga~---~vi~~~~~~~~~~v~~~~~ 254 (363)
T 3uog_A 183 EKGHLRAGDRVVVQGTGGVALFGLQIAKATGA-EVIVTSSSREKLDRAFAL----GAD---HGINRLEEDWVERVYALTG 254 (363)
T ss_dssp TTTCCCTTCEEEEESSBHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHH----TCS---EEEETTTSCHHHHHHHHHT
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEecCchhHHHHHHc----CCC---EEEcCCcccHHHHHHHHhC
Confidence 445567899999999875 6677777775 77 89999998 766665543 332 223222111 111
Q ss_pred CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 176 DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 176 ~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
...+|+|+-.. + . . .+....+.|+++|+++..
T Consensus 255 g~g~D~vid~~-g----~-~----~~~~~~~~l~~~G~iv~~ 286 (363)
T 3uog_A 255 DRGADHILEIA-G----G-A----GLGQSLKAVAPDGRISVI 286 (363)
T ss_dssp TCCEEEEEEET-T----S-S----CHHHHHHHEEEEEEEEEE
T ss_pred CCCceEEEECC-C----h-H----HHHHHHHHhhcCCEEEEE
Confidence 24799999743 1 1 1 244556789999988754
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=94.33 E-value=0.0087 Score=71.82 Aligned_cols=101 Identities=17% Similarity=0.073 Sum_probs=50.0
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-C-----CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccc-c-CCCceeE
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQA-G-----AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDV-E-IDEEVDV 181 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~-g-----~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l-~-~~~~~Dl 181 (428)
.+..+||+||.|+|..+..+.+. + ..+++..|+| .+.+.|+++++.. .++.-..|..+. . .+..||+
T Consensus 1239 ~~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~----di~~~~~d~~~~~~~~~~~ydl 1314 (2512)
T 2vz8_A 1239 SPKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQL----HVTQGQWDPANPAPGSLGKADL 1314 (2512)
T ss_dssp SSEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHH----TEEEECCCSSCCCC-----CCE
T ss_pred CCCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhc----ccccccccccccccCCCCceeE
Confidence 35679999999999765544332 1 2378899999 7877777766542 133221232221 1 2367999
Q ss_pred EEEecchhhhcchhhHHHHHHHHhcccccCeEEEccC
Q 014247 182 IISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 182 Vvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
|++.. .++...++...+..++++|||||.+++..
T Consensus 1315 via~~---vl~~t~~~~~~l~~~~~lL~p~G~l~~~e 1348 (2512)
T 2vz8_A 1315 LVCNC---ALATLGDPAVAVGNMAATLKEGGFLLLHT 1348 (2512)
T ss_dssp EEEEC---C--------------------CCEEEEEE
T ss_pred EEEcc---cccccccHHHHHHHHHHhcCCCcEEEEEe
Confidence 99865 56656678889999999999999988643
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=94.32 E-value=0.011 Score=56.42 Aligned_cols=73 Identities=8% Similarity=0.068 Sum_probs=53.1
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC
Q 014247 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI 175 (428)
Q Consensus 99 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~ 175 (428)
.+.+.+.+.. ..+|..|||.-||+|..+..+.+.|. +.+|+|++ ..+..++++++..+.. ...+..|+.++..
T Consensus 240 ~l~~~~i~~~-~~~~~~VlDpF~GsGtt~~aa~~~gr-~~ig~e~~~~~~~~~~~r~~~~~~~--~~~~~~~~~~i~~ 313 (323)
T 1boo_A 240 KLPEFFIRML-TEPDDLVVDIFGGSNTTGLVAERESR-KWISFEMKPEYVAASAFRFLDNNIS--EEKITDIYNRILN 313 (323)
T ss_dssp HHHHHHHHHH-CCTTCEEEETTCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHGGGSCSCSC--HHHHHHHHHHHHT
T ss_pred HHHHHHHHHh-CCCCCEEEECCCCCCHHHHHHHHcCC-CEEEEeCCHHHHHHHHHHHHhcccc--hHHHHHHHHHHHc
Confidence 3444444433 36889999999999999999999876 89999999 8888888887654432 4445555555543
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=94.29 E-value=0.13 Score=49.61 Aligned_cols=95 Identities=21% Similarity=0.216 Sum_probs=60.7
Q ss_pred hccCCCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcc-----cc----cc
Q 014247 106 QNQSFIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGR-----VE----DV 173 (428)
Q Consensus 106 ~~~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d-----~~----~l 173 (428)
+.....++.+||-+|+|. |.++..+|+. |+.+|+++|.+ +-.+.+++ .|.. .++..+ +. ++
T Consensus 185 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~---~vi~~~~~~~~~~~~i~~~ 257 (373)
T 1p0f_A 185 NTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE----LGAT---ECLNPKDYDKPIYEVICEK 257 (373)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH----TTCS---EEECGGGCSSCHHHHHHHH
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCc---EEEecccccchHHHHHHHH
Confidence 445567899999999874 6677777775 88789999988 66655543 3432 222211 11 11
Q ss_pred cCCCceeEEEEecchhhhcchhhHHHHHHHHhcccccC-eEEEcc
Q 014247 174 EIDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRG-GLILPS 217 (428)
Q Consensus 174 ~~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~lv~~ 217 (428)
. .+.+|+|+-.. + . ...+....++|+++ |+++..
T Consensus 258 t-~gg~Dvvid~~-g----~----~~~~~~~~~~l~~~~G~iv~~ 292 (373)
T 1p0f_A 258 T-NGGVDYAVECA-G----R----IETMMNALQSTYCGSGVTVVL 292 (373)
T ss_dssp T-TSCBSEEEECS-C----C----HHHHHHHHHTBCTTTCEEEEC
T ss_pred h-CCCCCEEEECC-C----C----HHHHHHHHHHHhcCCCEEEEE
Confidence 1 14799999632 1 1 23456667889999 988753
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=94.16 E-value=0.18 Score=48.76 Aligned_cols=96 Identities=24% Similarity=0.329 Sum_probs=60.6
Q ss_pred hccCCCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcc-----ccc-cc--
Q 014247 106 QNQSFIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGR-----VED-VE-- 174 (428)
Q Consensus 106 ~~~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d-----~~~-l~-- 174 (428)
+.....++.+||-+|+|. |.++..+|+. |+++|+++|.+ +-.+.+++. |.. .++... +.+ +.
T Consensus 184 ~~~~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~l----Ga~---~vi~~~~~~~~~~~~v~~~ 256 (373)
T 2fzw_A 184 NTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF----GAT---ECINPQDFSKPIQEVLIEM 256 (373)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH----TCS---EEECGGGCSSCHHHHHHHH
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc----CCc---eEeccccccccHHHHHHHH
Confidence 445567899999999874 6677777775 88789999988 666666542 332 222211 111 10
Q ss_pred CCCceeEEEEecchhhhcchhhHHHHHHHHhcccccC-eEEEcc
Q 014247 175 IDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRG-GLILPS 217 (428)
Q Consensus 175 ~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~lv~~ 217 (428)
..+.+|+|+-.. + . ...+....++|+++ |+++..
T Consensus 257 ~~~g~D~vid~~-g----~----~~~~~~~~~~l~~~~G~iv~~ 291 (373)
T 2fzw_A 257 TDGGVDYSFECI-G----N----VKVMRAALEACHKGWGVSVVV 291 (373)
T ss_dssp TTSCBSEEEECS-C----C----HHHHHHHHHTBCTTTCEEEEC
T ss_pred hCCCCCEEEECC-C----c----HHHHHHHHHhhccCCcEEEEE
Confidence 114799998642 1 1 23456677889999 988754
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=94.05 E-value=0.056 Score=51.39 Aligned_cols=94 Identities=14% Similarity=0.153 Sum_probs=58.1
Q ss_pred HHhccCCCCCCEEEEEcC--CCcHHHHHHHH-cCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccc---cc--
Q 014247 104 IMQNQSFIEGKVVVDVGC--GTGILSIFCAQ-AGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVED---VE-- 174 (428)
Q Consensus 104 i~~~~~~~~~~~VLDiGc--GtG~ls~~la~-~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~---l~-- 174 (428)
+.+.....++++||..|| |.|..+..+++ .|+ +|+++|.+ +.++.+++ .+.. . ++ |..+ +.
T Consensus 137 l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~~~----~g~~--~-~~--d~~~~~~~~~~ 206 (333)
T 1v3u_A 137 LLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKIAYLKQ----IGFD--A-AF--NYKTVNSLEEA 206 (333)
T ss_dssp HHTTSCCCSSCEEEEESTTBHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----TTCS--E-EE--ETTSCSCHHHH
T ss_pred HHHhhCCCCCCEEEEecCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHh----cCCc--E-EE--ecCCHHHHHHH
Confidence 334455678999999998 44555555555 477 89999998 66655532 2321 1 12 2221 10
Q ss_pred ----CCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 175 ----IDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 175 ----~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
..+.+|+|+.+. + . ..+....+.|++||+++.-
T Consensus 207 ~~~~~~~~~d~vi~~~-g-----~----~~~~~~~~~l~~~G~~v~~ 243 (333)
T 1v3u_A 207 LKKASPDGYDCYFDNV-G-----G----EFLNTVLSQMKDFGKIAIC 243 (333)
T ss_dssp HHHHCTTCEEEEEESS-C-----H----HHHHHHHTTEEEEEEEEEC
T ss_pred HHHHhCCCCeEEEECC-C-----h----HHHHHHHHHHhcCCEEEEE
Confidence 114799998753 1 1 1356677889999988754
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.00 E-value=0.16 Score=49.19 Aligned_cols=96 Identities=21% Similarity=0.270 Sum_probs=60.4
Q ss_pred hccCCCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcc-----ccc-cc--
Q 014247 106 QNQSFIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGR-----VED-VE-- 174 (428)
Q Consensus 106 ~~~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d-----~~~-l~-- 174 (428)
+.....++++||-+|+|. |.++..+|+. |+++|+++|.+ +-++.+++ .|.. .++... +.+ +.
T Consensus 186 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~~~~~~~ 258 (374)
T 1cdo_A 186 NTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV----FGAT---DFVNPNDHSEPISQVLSKM 258 (374)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCC---EEECGGGCSSCHHHHHHHH
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----hCCc---eEEeccccchhHHHHHHHH
Confidence 444567899999999874 6677777775 77789999988 66665543 3432 222211 111 00
Q ss_pred CCCceeEEEEecchhhhcchhhHHHHHHHHhcccccC-eEEEcc
Q 014247 175 IDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRG-GLILPS 217 (428)
Q Consensus 175 ~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~lv~~ 217 (428)
..+.+|+|+-.. + . ...+....++|+++ |+++..
T Consensus 259 ~~~g~D~vid~~-g----~----~~~~~~~~~~l~~~~G~iv~~ 293 (374)
T 1cdo_A 259 TNGGVDFSLECV-G----N----VGVMRNALESCLKGWGVSVLV 293 (374)
T ss_dssp HTSCBSEEEECS-C----C----HHHHHHHHHTBCTTTCEEEEC
T ss_pred hCCCCCEEEECC-C----C----HHHHHHHHHHhhcCCcEEEEE
Confidence 014799999642 1 1 23456677889999 988754
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=93.95 E-value=0.028 Score=53.99 Aligned_cols=95 Identities=25% Similarity=0.252 Sum_probs=59.0
Q ss_pred hccCCCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccc-------ccC
Q 014247 106 QNQSFIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVED-------VEI 175 (428)
Q Consensus 106 ~~~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~-------l~~ 175 (428)
..... ++++||-+|+|. |.++..+|+. |+++|++++.+ +-.+.+++. |.. .++..+-.+ +..
T Consensus 162 ~~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~----Ga~---~~~~~~~~~~~~~v~~~~~ 233 (348)
T 2d8a_A 162 LAGPI-SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKV----GAD---YVINPFEEDVVKEVMDITD 233 (348)
T ss_dssp TTSCC-TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHH----TCS---EEECTTTSCHHHHHHHHTT
T ss_pred HhcCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCC---EEECCCCcCHHHHHHHHcC
Confidence 34456 899999999963 6666666665 77689999998 666665532 321 122211111 111
Q ss_pred CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 176 DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 176 ~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
...+|+|+... + ....+....+.|+++|+++.-
T Consensus 234 g~g~D~vid~~-g--------~~~~~~~~~~~l~~~G~iv~~ 266 (348)
T 2d8a_A 234 GNGVDVFLEFS-G--------APKALEQGLQAVTPAGRVSLL 266 (348)
T ss_dssp TSCEEEEEECS-C--------CHHHHHHHHHHEEEEEEEEEC
T ss_pred CCCCCEEEECC-C--------CHHHHHHHHHHHhcCCEEEEE
Confidence 24699999743 1 123456667789999988754
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.94 E-value=0.055 Score=52.47 Aligned_cols=90 Identities=27% Similarity=0.251 Sum_probs=58.2
Q ss_pred CCCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcc----cccccCCCceeE
Q 014247 109 SFIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGR----VEDVEIDEEVDV 181 (428)
Q Consensus 109 ~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d----~~~l~~~~~~Dl 181 (428)
...+|.+||-+|+|. |.++..+|+. |+ +|++++.+ +.++.+++. |.. .++... +..+. ..+|+
T Consensus 191 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga-~Vi~~~~~~~~~~~a~~l----Ga~---~vi~~~~~~~~~~~~--~g~Dv 260 (369)
T 1uuf_A 191 QAGPGKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKREAAKAL----GAD---EVVNSRNADEMAAHL--KSFDF 260 (369)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHH----TCS---EEEETTCHHHHHTTT--TCEEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc----CCc---EEeccccHHHHHHhh--cCCCE
Confidence 567899999999975 6777777775 77 69999988 666666542 321 222211 11222 57999
Q ss_pred EEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 182 IISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 182 Vvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
|+... + .. ..+....+.|+++|+++.-
T Consensus 261 vid~~-g----~~----~~~~~~~~~l~~~G~iv~~ 287 (369)
T 1uuf_A 261 ILNTV-A----AP----HNLDDFTTLLKRDGTMTLV 287 (369)
T ss_dssp EEECC-S----SC----CCHHHHHTTEEEEEEEEEC
T ss_pred EEECC-C----CH----HHHHHHHHHhccCCEEEEe
Confidence 99643 1 11 1244566889999988753
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=93.86 E-value=0.17 Score=48.89 Aligned_cols=95 Identities=20% Similarity=0.282 Sum_probs=59.9
Q ss_pred hccCCCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcc-----cc----cc
Q 014247 106 QNQSFIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGR-----VE----DV 173 (428)
Q Consensus 106 ~~~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d-----~~----~l 173 (428)
+.....++++||-+|+|. |.++..+|+. |+++|+++|.+ +..+.+++ .|.. .++..+ +. ++
T Consensus 185 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~~~~~~~ 257 (374)
T 2jhf_A 185 KVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKE----VGAT---ECVNPQDYKKPIQEVLTEM 257 (374)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCS---EEECGGGCSSCHHHHHHHH
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCc---eEecccccchhHHHHHHHH
Confidence 445567899999999875 6667777765 77789999988 66655543 3332 222211 11 11
Q ss_pred cCCCceeEEEEecchhhhcchhhHHHHHHHHhcccccC-eEEEcc
Q 014247 174 EIDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRG-GLILPS 217 (428)
Q Consensus 174 ~~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~lv~~ 217 (428)
. .+.+|+|+-.. + . ...+....++|+++ |+++..
T Consensus 258 ~-~~g~D~vid~~-g----~----~~~~~~~~~~l~~~~G~iv~~ 292 (374)
T 2jhf_A 258 S-NGGVDFSFEVI-G----R----LDTMVTALSCCQEAYGVSVIV 292 (374)
T ss_dssp T-TSCBSEEEECS-C----C----HHHHHHHHHHBCTTTCEEEEC
T ss_pred h-CCCCcEEEECC-C----C----HHHHHHHHHHhhcCCcEEEEe
Confidence 1 14799998642 1 1 23456667789999 988753
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=93.83 E-value=0.11 Score=49.25 Aligned_cols=66 Identities=18% Similarity=0.208 Sum_probs=51.8
Q ss_pred CEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC--CceeEEEEec
Q 014247 114 KVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID--EEVDVIISEW 186 (428)
Q Consensus 114 ~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~--~~~DlVvs~~ 186 (428)
.+|||+=||.|.+++-+.++|++-|.++|++ ..++.-+.+. . -.++.+|+.++... ..+|+|+..+
T Consensus 1 mkvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~a~~ty~~N~-----~--~~~~~~DI~~i~~~~~~~~D~l~ggp 69 (331)
T 3ubt_Y 1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNH-----S--AKLIKGDISKISSDEFPKCDGIIGGP 69 (331)
T ss_dssp CEEEEESCTTCHHHHHHHHTTCEEEEEEECCTTTHHHHHHHC-----C--SEEEESCGGGCCGGGSCCCSEEECCC
T ss_pred CeEEEeCcCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHC-----C--CCcccCChhhCCHhhCCcccEEEecC
Confidence 4799999999999999999999888899999 5555544432 2 36788999987543 5799999854
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=93.82 E-value=0.17 Score=49.01 Aligned_cols=97 Identities=23% Similarity=0.277 Sum_probs=60.7
Q ss_pred HhccCCCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcc-----ccc-cc-
Q 014247 105 MQNQSFIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGR-----VED-VE- 174 (428)
Q Consensus 105 ~~~~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d-----~~~-l~- 174 (428)
.+.....++++||-+|+|. |.++..+|+. |+++|+++|.+ +-.+.+++ .|.. .++..+ +.+ +.
T Consensus 188 ~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~---~vi~~~~~~~~~~~~v~~ 260 (376)
T 1e3i_A 188 INTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA----LGAT---DCLNPRELDKPVQDVITE 260 (376)
T ss_dssp HTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCS---EEECGGGCSSCHHHHHHH
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCc---EEEccccccchHHHHHHH
Confidence 3445567899999999874 6677777775 77789999988 66655543 3432 222211 111 10
Q ss_pred -CCCceeEEEEecchhhhcchhhHHHHHHHHhcccccC-eEEEcc
Q 014247 175 -IDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRG-GLILPS 217 (428)
Q Consensus 175 -~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~lv~~ 217 (428)
..+.+|+|+-.. + . ...+....++|+++ |+++..
T Consensus 261 ~~~~g~Dvvid~~-G----~----~~~~~~~~~~l~~~~G~iv~~ 296 (376)
T 1e3i_A 261 LTAGGVDYSLDCA-G----T----AQTLKAAVDCTVLGWGSCTVV 296 (376)
T ss_dssp HHTSCBSEEEESS-C----C----HHHHHHHHHTBCTTTCEEEEC
T ss_pred HhCCCccEEEECC-C----C----HHHHHHHHHHhhcCCCEEEEE
Confidence 014799998632 1 1 23456677889999 988754
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=93.76 E-value=0.076 Score=50.76 Aligned_cols=93 Identities=22% Similarity=0.191 Sum_probs=60.4
Q ss_pred CCCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcc--cc----cccCCCce
Q 014247 109 SFIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGR--VE----DVEIDEEV 179 (428)
Q Consensus 109 ~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d--~~----~l~~~~~~ 179 (428)
...++.+||-+|+|. |.++..+|++ |..+|+++|.+ +-.+.+++ .|.. .++..+ .. ++.....+
T Consensus 168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~----lGa~---~~i~~~~~~~~~v~~~t~g~g~ 240 (345)
T 3jv7_A 168 LLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALARE----VGAD---AAVKSGAGAADAIRELTGGQGA 240 (345)
T ss_dssp GCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHH----TTCS---EEEECSTTHHHHHHHHHGGGCE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCCC---EEEcCCCcHHHHHHHHhCCCCC
Confidence 457899999999975 7777777775 56699999999 66665544 3432 222211 11 11112479
Q ss_pred eEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 180 DVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 180 DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
|+|+-.. . -...+....+.|+++|+++..
T Consensus 241 d~v~d~~-----G----~~~~~~~~~~~l~~~G~iv~~ 269 (345)
T 3jv7_A 241 TAVFDFV-----G----AQSTIDTAQQVVAVDGHISVV 269 (345)
T ss_dssp EEEEESS-----C----CHHHHHHHHHHEEEEEEEEEC
T ss_pred eEEEECC-----C----CHHHHHHHHHHHhcCCEEEEE
Confidence 9999632 1 123556677889999998854
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.75 E-value=0.09 Score=50.42 Aligned_cols=94 Identities=22% Similarity=0.251 Sum_probs=58.6
Q ss_pred ccCCCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcc----c-ccc---cC
Q 014247 107 NQSFIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGR----V-EDV---EI 175 (428)
Q Consensus 107 ~~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d----~-~~l---~~ 175 (428)
.....++++||-+|+|. |.++..+|+. |+ +|+++|.+ +..+.+++ .|.. .++..+ . ..+ ..
T Consensus 163 ~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~---~~~~~~~~~~~~~~i~~~~~ 234 (352)
T 1e3j_A 163 RAGVQLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKN----CGAD---VTLVVDPAKEEESSIIERIR 234 (352)
T ss_dssp HHTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH----TTCS---EEEECCTTTSCHHHHHHHHH
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHH----hCCC---EEEcCcccccHHHHHHHHhc
Confidence 34567899999999874 6677777775 77 59999998 66665543 3432 222211 1 111 10
Q ss_pred ---CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 176 ---DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 176 ---~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
...+|+|+... + . ...+....++|+++|+++..
T Consensus 235 ~~~g~g~D~vid~~-g----~----~~~~~~~~~~l~~~G~iv~~ 270 (352)
T 1e3j_A 235 SAIGDLPNVTIDCS-G----N----EKCITIGINITRTGGTLMLV 270 (352)
T ss_dssp HHSSSCCSEEEECS-C----C----HHHHHHHHHHSCTTCEEEEC
T ss_pred cccCCCCCEEEECC-C----C----HHHHHHHHHHHhcCCEEEEE
Confidence 24699999643 1 1 22455666789999998854
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.61 E-value=0.14 Score=47.97 Aligned_cols=70 Identities=16% Similarity=0.074 Sum_probs=52.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCe--EEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC-----CceeEE
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKR--VYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID-----EEVDVI 182 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~--V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~-----~~~DlV 182 (428)
....+|+|+-||.|.+++-+.++|+.. |.++|++ ..++..+.+. . ...++.+|+.++... ..+|+|
T Consensus 14 ~~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~-----~-~~~~~~~DI~~i~~~~i~~~~~~Dll 87 (295)
T 2qrv_A 14 RKPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRH-----Q-GKIMYVGDVRSVTQKHIQEWGPFDLV 87 (295)
T ss_dssp CCCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHT-----T-TCEEEECCGGGCCHHHHHHTCCCSEE
T ss_pred CCCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhC-----C-CCceeCCChHHccHHHhcccCCcCEE
Confidence 456799999999999999999999875 7999999 5554444332 1 246788999887532 369999
Q ss_pred EEec
Q 014247 183 ISEW 186 (428)
Q Consensus 183 vs~~ 186 (428)
+...
T Consensus 88 ~ggp 91 (295)
T 2qrv_A 88 IGGS 91 (295)
T ss_dssp EECC
T ss_pred EecC
Confidence 9864
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=93.52 E-value=0.014 Score=56.04 Aligned_cols=92 Identities=23% Similarity=0.268 Sum_probs=57.4
Q ss_pred ccCCCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEc---c----cccccCC
Q 014247 107 NQSFIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHG---R----VEDVEID 176 (428)
Q Consensus 107 ~~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~---d----~~~l~~~ 176 (428)
.... ++.+||-+|+|. |.++..+|+. |+++|++++.+ +-++.+++. .+ .++.. + +.++. .
T Consensus 160 ~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l------a~--~v~~~~~~~~~~~~~~~~-~ 229 (343)
T 2dq4_A 160 GSGV-SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY------AD--RLVNPLEEDLLEVVRRVT-G 229 (343)
T ss_dssp TTCC-TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT------CS--EEECTTTSCHHHHHHHHH-S
T ss_pred hCCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh------HH--hccCcCccCHHHHHHHhc-C
Confidence 4456 899999999853 6666667765 77689999998 655554332 11 12221 1 11112 3
Q ss_pred CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 177 EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 177 ~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
..+|+|+... + . ...++...+.|+++|+++.-
T Consensus 230 ~g~D~vid~~-g----~----~~~~~~~~~~l~~~G~iv~~ 261 (343)
T 2dq4_A 230 SGVEVLLEFS-G----N----EAAIHQGLMALIPGGEARIL 261 (343)
T ss_dssp SCEEEEEECS-C----C----HHHHHHHHHHEEEEEEEEEC
T ss_pred CCCCEEEECC-C----C----HHHHHHHHHHHhcCCEEEEE
Confidence 4799999643 1 1 23456667789999988754
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=93.49 E-value=0.11 Score=49.43 Aligned_cols=67 Identities=12% Similarity=0.046 Sum_probs=50.6
Q ss_pred CCEEEEEcCCCcHHHHHHHHcCC--CeE-EEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC----CceeEEEE
Q 014247 113 GKVVVDVGCGTGILSIFCAQAGA--KRV-YAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID----EEVDVIIS 184 (428)
Q Consensus 113 ~~~VLDiGcGtG~ls~~la~~g~--~~V-~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~----~~~DlVvs 184 (428)
..+|+|+-||.|.+++-+.++|. +.| .++|++ ..++..+.+... . ++++|+.++... ..+|+++.
T Consensus 10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~------~-~~~~DI~~~~~~~i~~~~~Dil~g 82 (327)
T 3qv2_A 10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKE------E-VQVKNLDSISIKQIESLNCNTWFM 82 (327)
T ss_dssp CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCC------C-CBCCCTTTCCHHHHHHTCCCEEEE
T ss_pred CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCC------C-cccCChhhcCHHHhccCCCCEEEe
Confidence 45899999999999999999984 677 899999 666555555421 1 567888877532 36999998
Q ss_pred ec
Q 014247 185 EW 186 (428)
Q Consensus 185 ~~ 186 (428)
.+
T Consensus 83 gp 84 (327)
T 3qv2_A 83 SP 84 (327)
T ss_dssp CC
T ss_pred cC
Confidence 65
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=93.48 E-value=0.023 Score=54.23 Aligned_cols=98 Identities=16% Similarity=0.172 Sum_probs=60.6
Q ss_pred HHHhccCCCCCCEEEEEcC--CCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc----
Q 014247 103 AIMQNQSFIEGKVVVDVGC--GTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE---- 174 (428)
Q Consensus 103 ~i~~~~~~~~~~~VLDiGc--GtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~---- 174 (428)
++.+.....++++||-.|+ |.|..+..+++. |+ +|++++.+ +-++.+. +..+.. .++...-.++.
T Consensus 140 al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~---~~~g~~---~~~~~~~~~~~~~~~ 212 (336)
T 4b7c_A 140 ALLDVGQPKNGETVVISGAAGAVGSVAGQIARLKGC-RVVGIAGGAEKCRFLV---EELGFD---GAIDYKNEDLAAGLK 212 (336)
T ss_dssp HHHHTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHH---HTTCCS---EEEETTTSCHHHHHH
T ss_pred HHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH---HHcCCC---EEEECCCHHHHHHHH
Confidence 3435556788999999998 346666666665 77 99999998 6555542 222331 12221111110
Q ss_pred --CCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 175 --IDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 175 --~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
..+.+|+|+... +. ..+....+.|+++|+++..
T Consensus 213 ~~~~~~~d~vi~~~-g~---------~~~~~~~~~l~~~G~iv~~ 247 (336)
T 4b7c_A 213 RECPKGIDVFFDNV-GG---------EILDTVLTRIAFKARIVLC 247 (336)
T ss_dssp HHCTTCEEEEEESS-CH---------HHHHHHHTTEEEEEEEEEC
T ss_pred HhcCCCceEEEECC-Cc---------chHHHHHHHHhhCCEEEEE
Confidence 125799998743 11 2466777899999998854
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.46 E-value=0.18 Score=48.87 Aligned_cols=95 Identities=26% Similarity=0.412 Sum_probs=59.1
Q ss_pred ccC-CCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcc---ccc-------
Q 014247 107 NQS-FIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGR---VED------- 172 (428)
Q Consensus 107 ~~~-~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d---~~~------- 172 (428)
... ..+|.+||-+|+|. |.++..+|+. |+.+|++++.+ +-.+.+++ .|.. .++..+ -.+
T Consensus 189 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~~~~v~~ 261 (380)
T 1vj0_A 189 EYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEE----IGAD---LTLNRRETSVEERRKAIMD 261 (380)
T ss_dssp TCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHH----TTCS---EEEETTTSCHHHHHHHHHH
T ss_pred hcCCCCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHH----cCCc---EEEeccccCcchHHHHHHH
Confidence 345 67899999999763 6677777775 75699999998 66665543 3432 223222 111
Q ss_pred ccCCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 173 VEIDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 173 l~~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
+.....+|+|+-.. + .. ..+....++|+++|+++.-
T Consensus 262 ~~~g~g~Dvvid~~-g----~~----~~~~~~~~~l~~~G~iv~~ 297 (380)
T 1vj0_A 262 ITHGRGADFILEAT-G----DS----RALLEGSELLRRGGFYSVA 297 (380)
T ss_dssp HTTTSCEEEEEECS-S----CT----THHHHHHHHEEEEEEEEEC
T ss_pred HhCCCCCcEEEECC-C----CH----HHHHHHHHHHhcCCEEEEE
Confidence 11123699999643 1 11 2345566789999988753
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=93.34 E-value=0.11 Score=54.68 Aligned_cols=106 Identities=14% Similarity=0.135 Sum_probs=65.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-----------CC--CeEEEEeC---h-HHHHHHH-----------HHHHHC-----
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQA-----------GA--KRVYAVDA---S-DIAVQAN-----------EVVKAN----- 157 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~-----------g~--~~V~giD~---s-~~~~~a~-----------~~~~~~----- 157 (428)
.+..+|||+|.|+|...+.+.+. .. -+++++|. + +.+..|. +.+...
T Consensus 57 ~~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~ 136 (689)
T 3pvc_A 57 QQSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLA 136 (689)
T ss_dssp SSEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCS
T ss_pred CCceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCC
Confidence 34569999999999876665442 01 27899998 5 4443322 222221
Q ss_pred C-----CCC---cEEEEEcccccccC------CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 158 N-----LTD---KVIVLHGRVEDVEI------DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 158 ~-----~~~---~v~~~~~d~~~l~~------~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
+ +.+ .++++.+|+.+.-. ...+|+++...+.-....+---..++..+.++++|||.+..
T Consensus 137 ~~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t 209 (689)
T 3pvc_A 137 GCHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFST 209 (689)
T ss_dssp EEEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEE
T ss_pred CceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEe
Confidence 1 111 57788889865321 36899999866322222222246788899999999998763
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=93.22 E-value=0.027 Score=53.55 Aligned_cols=96 Identities=19% Similarity=0.211 Sum_probs=59.9
Q ss_pred HHhccCCCCCCEEEEEcC--CCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccc-------
Q 014247 104 IMQNQSFIEGKVVVDVGC--GTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVED------- 172 (428)
Q Consensus 104 i~~~~~~~~~~~VLDiGc--GtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~------- 172 (428)
+.+.....++++||-.|+ |.|..+..+++. |+ +|++++.+ +-++.+++. |.. .++..+-.+
T Consensus 132 l~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~----Ga~---~~~~~~~~~~~~~~~~ 203 (325)
T 3jyn_A 132 LRQTYQVKPGEIILFHAAAGGVGSLACQWAKALGA-KLIGTVSSPEKAAHAKAL----GAW---ETIDYSHEDVAKRVLE 203 (325)
T ss_dssp HHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHH----TCS---EEEETTTSCHHHHHHH
T ss_pred HHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc----CCC---EEEeCCCccHHHHHHH
Confidence 334445678999999983 346777777765 88 89999998 766666542 321 222221111
Q ss_pred ccCCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 173 VEIDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 173 l~~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
......+|+|+... + . ..+....+.|+++|+++..
T Consensus 204 ~~~~~g~Dvvid~~-g----~-----~~~~~~~~~l~~~G~iv~~ 238 (325)
T 3jyn_A 204 LTDGKKCPVVYDGV-G----Q-----DTWLTSLDSVAPRGLVVSF 238 (325)
T ss_dssp HTTTCCEEEEEESS-C----G-----GGHHHHHTTEEEEEEEEEC
T ss_pred HhCCCCceEEEECC-C----h-----HHHHHHHHHhcCCCEEEEE
Confidence 11124799999743 1 1 2345567889999998854
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=93.11 E-value=0.021 Score=54.72 Aligned_cols=96 Identities=26% Similarity=0.284 Sum_probs=60.8
Q ss_pred HHHhccCCCCCCEEEEEcC--CCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccc-----
Q 014247 103 AIMQNQSFIEGKVVVDVGC--GTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDV----- 173 (428)
Q Consensus 103 ~i~~~~~~~~~~~VLDiGc--GtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l----- 173 (428)
++.+.....++++||-.|+ |.|.++..+++. |+ +|++++.+ +-.+.+++. +.. .++..+ .++
T Consensus 150 ~l~~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~----ga~---~v~~~~-~~~~~~v~ 220 (342)
T 4eye_A 150 AYARRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGA-KVIAVVNRTAATEFVKSV----GAD---IVLPLE-EGWAKAVR 220 (342)
T ss_dssp HHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHH----TCS---EEEESS-TTHHHHHH
T ss_pred HHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhc----CCc---EEecCc-hhHHHHHH
Confidence 3334556678999999997 346777777775 77 89999998 666665542 321 223222 221
Q ss_pred --cCCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 174 --EIDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 174 --~~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
.....+|+|+... +. ..+....+.|+++|+++..
T Consensus 221 ~~~~~~g~Dvvid~~-g~---------~~~~~~~~~l~~~G~iv~~ 256 (342)
T 4eye_A 221 EATGGAGVDMVVDPI-GG---------PAFDDAVRTLASEGRLLVV 256 (342)
T ss_dssp HHTTTSCEEEEEESC-C-----------CHHHHHHTEEEEEEEEEC
T ss_pred HHhCCCCceEEEECC-ch---------hHHHHHHHhhcCCCEEEEE
Confidence 1124799999743 11 1345566789999998854
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.86 E-value=0.56 Score=45.40 Aligned_cols=95 Identities=16% Similarity=0.174 Sum_probs=66.5
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCC-cEEEEEcccccccCCCceeEEEEecchh
Q 014247 112 EGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTD-KVIVLHGRVEDVEIDEEVDVIISEWMGY 189 (428)
Q Consensus 112 ~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~-~v~~~~~d~~~l~~~~~~DlVvs~~~~~ 189 (428)
.+.+||.|+.+.|.++..++.. .++.+.-| -.....+.++..|++.+ .+++... .. ..+..||+|+..+
T Consensus 38 ~~~~~~~~~d~~gal~~~~~~~---~~~~~~ds~~~~~~~~~n~~~~~~~~~~~~~~~~-~~--~~~~~~~~v~~~l--- 108 (375)
T 4dcm_A 38 IRGPVLILNDAFGALSCALAEH---KPYSIGDSYISELATRENLRLNGIDESSVKFLDS-TA--DYPQQPGVVLIKV--- 108 (375)
T ss_dssp CCSCEEEECCSSSHHHHHTGGG---CCEEEESCHHHHHHHHHHHHHTTCCGGGSEEEET-TS--CCCSSCSEEEEEC---
T ss_pred CCCCEEEECCCCCHHHHhhccC---CceEEEhHHHHHHHHHHHHHHcCCCccceEeccc-cc--ccccCCCEEEEEc---
Confidence 4467999999999999888764 44555445 33344667888898865 3666532 22 2347899999743
Q ss_pred hhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 190 MLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 190 ~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
-.....+...|..+...|++|+.++.
T Consensus 109 -pk~~~~l~~~L~~l~~~l~~~~~i~~ 134 (375)
T 4dcm_A 109 -PKTLALLEQQLRALRKVVTSDTRIIA 134 (375)
T ss_dssp -CSCHHHHHHHHHHHHTTCCTTSEEEE
T ss_pred -CCCHHHHHHHHHHHHhhCCCCCEEEE
Confidence 23345577788899999999998864
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=92.74 E-value=0.027 Score=53.66 Aligned_cols=95 Identities=20% Similarity=0.223 Sum_probs=58.6
Q ss_pred HhccCCCCCCEEEEEcC--CCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccc-------c
Q 014247 105 MQNQSFIEGKVVVDVGC--GTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVED-------V 173 (428)
Q Consensus 105 ~~~~~~~~~~~VLDiGc--GtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~-------l 173 (428)
.+.....++++||-+|+ |.|.++..+++. |+ +|++++.+ +-++.+++ .+.. .++..+-.+ .
T Consensus 141 ~~~~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----~ga~---~~~~~~~~~~~~~~~~~ 212 (334)
T 3qwb_A 141 NEAYHVKKGDYVLLFAAAGGVGLILNQLLKMKGA-HTIAVASTDEKLKIAKE----YGAE---YLINASKEDILRQVLKF 212 (334)
T ss_dssp HTTSCCCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----TTCS---EEEETTTSCHHHHHHHH
T ss_pred HHhccCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----cCCc---EEEeCCCchHHHHHHHH
Confidence 34445678999999995 346666666665 77 89999998 66655543 3321 222221111 1
Q ss_pred cCCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 174 EIDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 174 ~~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
.....+|+|+... +. ..+....+.|+++|+++..
T Consensus 213 ~~~~g~D~vid~~-g~---------~~~~~~~~~l~~~G~iv~~ 246 (334)
T 3qwb_A 213 TNGKGVDASFDSV-GK---------DTFEISLAALKRKGVFVSF 246 (334)
T ss_dssp TTTSCEEEEEECC-GG---------GGHHHHHHHEEEEEEEEEC
T ss_pred hCCCCceEEEECC-Ch---------HHHHHHHHHhccCCEEEEE
Confidence 1135799999743 21 2345556789999988854
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.67 E-value=0.052 Score=52.19 Aligned_cols=97 Identities=18% Similarity=0.253 Sum_probs=57.9
Q ss_pred HHhccCCCCCCEEEEEcC--CCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccc------
Q 014247 104 IMQNQSFIEGKVVVDVGC--GTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDV------ 173 (428)
Q Consensus 104 i~~~~~~~~~~~VLDiGc--GtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l------ 173 (428)
+.+.....++++||-.|+ |.|..+..+++. |+ +|++++.+ +.++.+++ .+.. .++..+-.++
T Consensus 162 l~~~~~~~~g~~vlV~GasggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----~ga~---~~~d~~~~~~~~~~~~ 233 (351)
T 1yb5_A 162 LIHSACVKAGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIVLQ----NGAH---EVFNHREVNYIDKIKK 233 (351)
T ss_dssp HHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----TTCS---EEEETTSTTHHHHHHH
T ss_pred HHHhhCCCCcCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChhHHHHHHH----cCCC---EEEeCCCchHHHHHHH
Confidence 333445678999999997 345555555554 77 89999998 65554433 3322 1222111111
Q ss_pred -cCCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccC
Q 014247 174 -EIDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 174 -~~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
.....+|+|+... +. ..+....++|+++|+++...
T Consensus 234 ~~~~~~~D~vi~~~-G~---------~~~~~~~~~l~~~G~iv~~g 269 (351)
T 1yb5_A 234 YVGEKGIDIIIEML-AN---------VNLSKDLSLLSHGGRVIVVG 269 (351)
T ss_dssp HHCTTCEEEEEESC-HH---------HHHHHHHHHEEEEEEEEECC
T ss_pred HcCCCCcEEEEECC-Ch---------HHHHHHHHhccCCCEEEEEe
Confidence 1123799999753 21 13455678899999987543
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=92.66 E-value=0.16 Score=48.72 Aligned_cols=85 Identities=19% Similarity=0.239 Sum_probs=54.1
Q ss_pred CEEEEEcCCC-cHHH-HHHH-Hc-CCCeEEEEeCh-H---HHHHHHHHHHHCCCCCcEEEEEc---c---cccccCCCce
Q 014247 114 KVVVDVGCGT-GILS-IFCA-QA-GAKRVYAVDAS-D---IAVQANEVVKANNLTDKVIVLHG---R---VEDVEIDEEV 179 (428)
Q Consensus 114 ~~VLDiGcGt-G~ls-~~la-~~-g~~~V~giD~s-~---~~~~a~~~~~~~~~~~~v~~~~~---d---~~~l~~~~~~ 179 (428)
.+||-+|+|. |.++ ..+| +. |+++|++++.+ + -.+.+++ .|. ..+.. | +.++ .+.+
T Consensus 174 ~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~----lGa----~~v~~~~~~~~~i~~~--~gg~ 243 (357)
T 2b5w_A 174 SSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEE----LDA----TYVDSRQTPVEDVPDV--YEQM 243 (357)
T ss_dssp CEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHH----TTC----EEEETTTSCGGGHHHH--SCCE
T ss_pred CEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHH----cCC----cccCCCccCHHHHHHh--CCCC
Confidence 9999999854 6677 7777 65 78669999998 6 6666543 332 22211 1 1111 1379
Q ss_pred eEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 180 DVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 180 DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
|+|+-.. + . ...+....++|+++|+++..
T Consensus 244 Dvvid~~-g----~----~~~~~~~~~~l~~~G~iv~~ 272 (357)
T 2b5w_A 244 DFIYEAT-G----F----PKHAIQSVQALAPNGVGALL 272 (357)
T ss_dssp EEEEECS-C----C----HHHHHHHHHHEEEEEEEEEC
T ss_pred CEEEECC-C----C----hHHHHHHHHHHhcCCEEEEE
Confidence 9998632 1 1 12455667889999988754
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=92.60 E-value=0.11 Score=49.63 Aligned_cols=67 Identities=16% Similarity=0.174 Sum_probs=50.0
Q ss_pred CEEEEEcCCCcHHHHHHHHcCC--CeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC----CceeEEEEec
Q 014247 114 KVVVDVGCGTGILSIFCAQAGA--KRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID----EEVDVIISEW 186 (428)
Q Consensus 114 ~~VLDiGcGtG~ls~~la~~g~--~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~----~~~DlVvs~~ 186 (428)
.+++|+-||.|.+++-+.++|. +.|.++|++ ..++.-+.+.. ...++.+|+.++... ..+|+++..+
T Consensus 4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~------~~~~~~~DI~~~~~~~~~~~~~D~l~ggp 77 (333)
T 4h0n_A 4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFP------ETNLLNRNIQQLTPQVIKKWNVDTILMSP 77 (333)
T ss_dssp EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT------TSCEECCCGGGCCHHHHHHTTCCEEEECC
T ss_pred CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCC------CCceeccccccCCHHHhccCCCCEEEecC
Confidence 4799999999999999998886 678899999 55544444421 135678899887542 3699999754
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.60 E-value=0.15 Score=48.68 Aligned_cols=96 Identities=23% Similarity=0.230 Sum_probs=59.0
Q ss_pred hccCCCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcc---ccc----ccC
Q 014247 106 QNQSFIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGR---VED----VEI 175 (428)
Q Consensus 106 ~~~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d---~~~----l~~ 175 (428)
......++.+||-.|+|. |.++..+|++ |+..++++|.+ +-++.+++ .|.. .++... ..+ +..
T Consensus 154 ~~~~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~----lGa~---~~i~~~~~~~~~~~~~~~~ 226 (346)
T 4a2c_A 154 HLAQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKS----FGAM---QTFNSSEMSAPQMQSVLRE 226 (346)
T ss_dssp HHTTCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTCS---EEEETTTSCHHHHHHHHGG
T ss_pred HHhccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHH----cCCe---EEEeCCCCCHHHHHHhhcc
Confidence 334567899999999975 4556666665 88788999998 66555543 3432 223221 111 111
Q ss_pred CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 176 DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 176 ~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
...+|+|+... + -...++...++|++||.++..
T Consensus 227 ~~g~d~v~d~~-G--------~~~~~~~~~~~l~~~G~~v~~ 259 (346)
T 4a2c_A 227 LRFNQLILETA-G--------VPQTVELAVEIAGPHAQLALV 259 (346)
T ss_dssp GCSSEEEEECS-C--------SHHHHHHHHHHCCTTCEEEEC
T ss_pred cCCcccccccc-c--------ccchhhhhhheecCCeEEEEE
Confidence 25678887532 1 123455666789999988754
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=92.58 E-value=0.068 Score=51.50 Aligned_cols=95 Identities=22% Similarity=0.224 Sum_probs=58.2
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccc-cc--cCCCceeE
Q 014247 108 QSFIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVE-DV--EIDEEVDV 181 (428)
Q Consensus 108 ~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~-~l--~~~~~~Dl 181 (428)
....++.+||-+|+|. |.++..+|+. |+ +|++++.+ +-++.+++. |.. .++..+-. ++ ...+.+|+
T Consensus 175 ~~~~~g~~VlV~GaG~vG~~~~qlak~~Ga-~Vi~~~~~~~~~~~~~~l----Ga~---~v~~~~~~~~~~~~~~~~~D~ 246 (360)
T 1piw_A 175 NGCGPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMKM----GAD---HYIATLEEGDWGEKYFDTFDL 246 (360)
T ss_dssp TTCSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHH----TCS---EEEEGGGTSCHHHHSCSCEEE
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHc----CCC---EEEcCcCchHHHHHhhcCCCE
Confidence 4567899999999864 6667777765 78 79999988 666666542 321 22322111 11 01157999
Q ss_pred EEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 182 IISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 182 Vvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
|+... +.. . ...+....++|+++|+++.-
T Consensus 247 vid~~-g~~--~----~~~~~~~~~~l~~~G~iv~~ 275 (360)
T 1piw_A 247 IVVCA-SSL--T----DIDFNIMPKAMKVGGRIVSI 275 (360)
T ss_dssp EEECC-SCS--T----TCCTTTGGGGEEEEEEEEEC
T ss_pred EEECC-CCC--c----HHHHHHHHHHhcCCCEEEEe
Confidence 99743 110 0 11234566789999988753
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=92.55 E-value=0.12 Score=49.33 Aligned_cols=87 Identities=22% Similarity=0.274 Sum_probs=55.2
Q ss_pred CCCEEEEEc-CC-CcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcc------cccccCCCceeE
Q 014247 112 EGKVVVDVG-CG-TGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGR------VEDVEIDEEVDV 181 (428)
Q Consensus 112 ~~~~VLDiG-cG-tG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d------~~~l~~~~~~Dl 181 (428)
++.+||-+| +| .|.++..+++. |+ +|++++.+ +-++.+++. |.. .++..+ +.++ ....+|+
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~l----Ga~---~vi~~~~~~~~~~~~~-~~~g~Dv 220 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAYGL-RVITTASRNETIEWTKKM----GAD---IVLNHKESLLNQFKTQ-GIELVDY 220 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEECCSHHHHHHHHHH----TCS---EEECTTSCHHHHHHHH-TCCCEEE
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhc----CCc---EEEECCccHHHHHHHh-CCCCccE
Confidence 789999994 44 36677777765 77 89999998 666666552 321 122111 1111 1257999
Q ss_pred EEEecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 182 IISEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 182 Vvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
|+... + -...+....++|+++|+++.
T Consensus 221 v~d~~-g--------~~~~~~~~~~~l~~~G~iv~ 246 (346)
T 3fbg_A 221 VFCTF-N--------TDMYYDDMIQLVKPRGHIAT 246 (346)
T ss_dssp EEESS-C--------HHHHHHHHHHHEEEEEEEEE
T ss_pred EEECC-C--------chHHHHHHHHHhccCCEEEE
Confidence 98632 1 23445666788999999864
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=92.35 E-value=0.1 Score=49.84 Aligned_cols=97 Identities=16% Similarity=0.092 Sum_probs=59.2
Q ss_pred HHhccCCCCCCEEEEEcC--CCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEc-cccccc----
Q 014247 104 IMQNQSFIEGKVVVDVGC--GTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHG-RVEDVE---- 174 (428)
Q Consensus 104 i~~~~~~~~~~~VLDiGc--GtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~-d~~~l~---- 174 (428)
+.+.....++++||-.|+ |.|..+..+++. |+ +|++++.+ +.++.+++ ..|.. .++.. +..++.
T Consensus 147 l~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~-~V~~~~~~~~~~~~~~~---~~g~~---~~~d~~~~~~~~~~~~ 219 (345)
T 2j3h_A 147 FYEVCSPKEGETVYVSAASGAVGQLVGQLAKMMGC-YVVGSAGSKEKVDLLKT---KFGFD---DAFNYKEESDLTAALK 219 (345)
T ss_dssp HHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH---TSCCS---EEEETTSCSCSHHHHH
T ss_pred HHHHhCCCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH---HcCCc---eEEecCCHHHHHHHHH
Confidence 334456678999999997 456666666664 77 89999998 66555542 22321 12211 101110
Q ss_pred --CCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 175 --IDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 175 --~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
..+.+|+|+... + . ..+....+.|++||+++..
T Consensus 220 ~~~~~~~d~vi~~~-g--------~-~~~~~~~~~l~~~G~~v~~ 254 (345)
T 2j3h_A 220 RCFPNGIDIYFENV-G--------G-KMLDAVLVNMNMHGRIAVC 254 (345)
T ss_dssp HHCTTCEEEEEESS-C--------H-HHHHHHHTTEEEEEEEEEC
T ss_pred HHhCCCCcEEEECC-C--------H-HHHHHHHHHHhcCCEEEEE
Confidence 024699998743 1 1 2466677899999998753
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=92.33 E-value=0.1 Score=50.35 Aligned_cols=89 Identities=12% Similarity=0.065 Sum_probs=58.1
Q ss_pred CCCEEEEEc-CC-CcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEc--c----cccccCCCceeE
Q 014247 112 EGKVVVDVG-CG-TGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHG--R----VEDVEIDEEVDV 181 (428)
Q Consensus 112 ~~~~VLDiG-cG-tG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~--d----~~~l~~~~~~Dl 181 (428)
++.+||-+| +| .|.++..+|+. +..+|++++.+ +-.+.+++ .|.. .++.. + +.++ ..+.+|+
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~----lGad---~vi~~~~~~~~~v~~~-~~~g~Dv 242 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKS----LGAH---HVIDHSKPLAAEVAAL-GLGAPAF 242 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHH----TTCS---EEECTTSCHHHHHHTT-CSCCEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHH----cCCC---EEEeCCCCHHHHHHHh-cCCCceE
Confidence 788999998 54 47888888886 55599999998 66666543 3432 22211 1 1112 1257999
Q ss_pred EEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 182 IISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 182 Vvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
|+-.. + -...+....++|+++|+++..
T Consensus 243 vid~~-g--------~~~~~~~~~~~l~~~G~iv~~ 269 (363)
T 4dvj_A 243 VFSTT-H--------TDKHAAEIADLIAPQGRFCLI 269 (363)
T ss_dssp EEECS-C--------HHHHHHHHHHHSCTTCEEEEC
T ss_pred EEECC-C--------chhhHHHHHHHhcCCCEEEEE
Confidence 98632 1 224456677889999998854
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.26 E-value=0.15 Score=48.75 Aligned_cols=90 Identities=20% Similarity=0.273 Sum_probs=57.3
Q ss_pred CCCCCCEEEEEcC--CCcHHHHHHHH-cCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccc---ccc------C
Q 014247 109 SFIEGKVVVDVGC--GTGILSIFCAQ-AGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVE---DVE------I 175 (428)
Q Consensus 109 ~~~~~~~VLDiGc--GtG~ls~~la~-~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~---~l~------~ 175 (428)
...++++||.+|+ |.|..+..+++ .|+ +|++++.+ +..+.+++ .+.. .++ |.. ++. .
T Consensus 166 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~V~~~~~~~~~~~~~~~----~g~~---~~~--d~~~~~~~~~~~~~~~ 235 (347)
T 2hcy_A 166 NLMAGHWVAISGAAGGLGSLAVQYAKAMGY-RVLGIDGGEGKEELFRS----IGGE---VFI--DFTKEKDIVGAVLKAT 235 (347)
T ss_dssp TCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECSTTHHHHHHH----TTCC---EEE--ETTTCSCHHHHHHHHH
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCC-cEEEEcCCHHHHHHHHH----cCCc---eEE--ecCccHhHHHHHHHHh
Confidence 5678999999998 35666666665 477 89999988 65555543 2321 122 222 110 0
Q ss_pred CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 176 DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 176 ~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
.+.+|+|+... + ....++...+.|+++|+++.-
T Consensus 236 ~~~~D~vi~~~-g--------~~~~~~~~~~~l~~~G~iv~~ 268 (347)
T 2hcy_A 236 DGGAHGVINVS-V--------SEAAIEASTRYVRANGTTVLV 268 (347)
T ss_dssp TSCEEEEEECS-S--------CHHHHHHHTTSEEEEEEEEEC
T ss_pred CCCCCEEEECC-C--------cHHHHHHHHHHHhcCCEEEEE
Confidence 12699999753 1 123567778899999988753
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=92.16 E-value=0.17 Score=48.28 Aligned_cols=92 Identities=21% Similarity=0.205 Sum_probs=57.7
Q ss_pred cCCCCCCEEEEEcC--CCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccc-------ccCC
Q 014247 108 QSFIEGKVVVDVGC--GTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVED-------VEID 176 (428)
Q Consensus 108 ~~~~~~~~VLDiGc--GtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~-------l~~~ 176 (428)
....++++||-+|+ |.|..+..+++. |+ +|++++.+ +.++.+++. +.. .++...-.+ ....
T Consensus 162 ~~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~-~Vi~~~~~~~~~~~~~~~----ga~---~~~d~~~~~~~~~~~~~~~~ 233 (343)
T 2eih_A 162 LGVRPGDDVLVMAAGSGVSVAAIQIAKLFGA-RVIATAGSEDKLRRAKAL----GAD---ETVNYTHPDWPKEVRRLTGG 233 (343)
T ss_dssp SCCCTTCEEEECSTTSTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHH----TCS---EEEETTSTTHHHHHHHHTTT
T ss_pred cCCCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhc----CCC---EEEcCCcccHHHHHHHHhCC
Confidence 35678999999998 567777777765 77 89999998 666666432 321 122211111 1112
Q ss_pred CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 177 EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 177 ~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
..+|+|+... + . ..+....+.|+++|+++.-
T Consensus 234 ~~~d~vi~~~-g-----~----~~~~~~~~~l~~~G~~v~~ 264 (343)
T 2eih_A 234 KGADKVVDHT-G-----A----LYFEGVIKATANGGRIAIA 264 (343)
T ss_dssp TCEEEEEESS-C-----S----SSHHHHHHHEEEEEEEEES
T ss_pred CCceEEEECC-C-----H----HHHHHHHHhhccCCEEEEE
Confidence 4799999743 1 1 1245556788999988754
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=91.87 E-value=0.14 Score=49.31 Aligned_cols=94 Identities=19% Similarity=0.186 Sum_probs=59.2
Q ss_pred hccCCCCCCEEEEEc--CCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccc----c--C
Q 014247 106 QNQSFIEGKVVVDVG--CGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDV----E--I 175 (428)
Q Consensus 106 ~~~~~~~~~~VLDiG--cGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l----~--~ 175 (428)
+.....++++||-+| .|.|..+..+++. |+ +|++++.+ +.++.+++ .|.. .++..+-.++ . .
T Consensus 157 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~----~Ga~---~~~~~~~~~~~~~~~~~~ 228 (362)
T 2c0c_A 157 ELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKC-HVIGTCSSDEKSAFLKS----LGCD---RPINYKTEPVGTVLKQEY 228 (362)
T ss_dssp HHTCCCTTCEEEETTTTBTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----TTCS---EEEETTTSCHHHHHHHHC
T ss_pred HhcCCCCCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHH----cCCc---EEEecCChhHHHHHHHhc
Confidence 334567899999999 3467777777775 77 89999998 66665543 3332 2222111111 0 1
Q ss_pred CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 176 DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 176 ~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
...+|+|+... + . ..+....+.|+++|+++.-
T Consensus 229 ~~g~D~vid~~-g----~-----~~~~~~~~~l~~~G~iv~~ 260 (362)
T 2c0c_A 229 PEGVDVVYESV-G----G-----AMFDLAVDALATKGRLIVI 260 (362)
T ss_dssp TTCEEEEEECS-C----T-----HHHHHHHHHEEEEEEEEEC
T ss_pred CCCCCEEEECC-C----H-----HHHHHHHHHHhcCCEEEEE
Confidence 24699999743 1 1 2456667889999988753
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=91.58 E-value=0.21 Score=47.61 Aligned_cols=90 Identities=21% Similarity=0.192 Sum_probs=57.0
Q ss_pred CCCCCCEEEEEcCC-CcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC-------CCc
Q 014247 109 SFIEGKVVVDVGCG-TGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI-------DEE 178 (428)
Q Consensus 109 ~~~~~~~VLDiGcG-tG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~-------~~~ 178 (428)
...++++||-+|+| .|.++..+++. |+ +|++++.+ +-++.+++ .+.. .++ |..+... .+.
T Consensus 161 ~~~~g~~VlV~GaG~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~---~~~--d~~~~~~~~~~~~~~~~ 230 (339)
T 1rjw_A 161 GAKPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAKE----LGAD---LVV--NPLKEDAAKFMKEKVGG 230 (339)
T ss_dssp TCCTTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHH----TTCS---EEE--CTTTSCHHHHHHHHHSS
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----CCCC---EEe--cCCCccHHHHHHHHhCC
Confidence 56789999999996 36666666665 77 99999998 66665543 3332 122 2211100 046
Q ss_pred eeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 179 VDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 179 ~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
+|+|+... + . ...++...++|+++|+++.-
T Consensus 231 ~d~vid~~-g----~----~~~~~~~~~~l~~~G~~v~~ 260 (339)
T 1rjw_A 231 VHAAVVTA-V----S----KPAFQSAYNSIRRGGACVLV 260 (339)
T ss_dssp EEEEEESS-C----C----HHHHHHHHHHEEEEEEEEEC
T ss_pred CCEEEECC-C----C----HHHHHHHHHHhhcCCEEEEe
Confidence 99998643 1 1 23456667789999988753
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=91.44 E-value=0.041 Score=52.94 Aligned_cols=93 Identities=27% Similarity=0.304 Sum_probs=57.9
Q ss_pred hccCCCCCCEEEEEcC--CCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccc-------cc
Q 014247 106 QNQSFIEGKVVVDVGC--GTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVED-------VE 174 (428)
Q Consensus 106 ~~~~~~~~~~VLDiGc--GtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~-------l~ 174 (428)
+.....++++||-+|+ |.|.++..+++. |+ +|++++.+ +-++.+++. +.. .++..+-.+ ..
T Consensus 161 ~~~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~l----Ga~---~~~~~~~~~~~~~~~~~~ 232 (353)
T 4dup_A 161 QMAGLTEGESVLIHGGTSGIGTTAIQLARAFGA-EVYATAGSTGKCEACERL----GAK---RGINYRSEDFAAVIKAET 232 (353)
T ss_dssp TTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHH----TCS---EEEETTTSCHHHHHHHHH
T ss_pred HhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhc----CCC---EEEeCCchHHHHHHHHHh
Confidence 4455678999999953 346666666665 77 89999998 766666542 321 222211111 11
Q ss_pred CCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 175 IDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 175 ~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
...+|+|+... +. . .+....+.|+++|+++..
T Consensus 233 -~~g~Dvvid~~-g~-----~----~~~~~~~~l~~~G~iv~~ 264 (353)
T 4dup_A 233 -GQGVDIILDMI-GA-----A----YFERNIASLAKDGCLSII 264 (353)
T ss_dssp -SSCEEEEEESC-CG-----G----GHHHHHHTEEEEEEEEEC
T ss_pred -CCCceEEEECC-CH-----H----HHHHHHHHhccCCEEEEE
Confidence 35799999743 21 1 345566789999988754
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=91.41 E-value=0.055 Score=51.30 Aligned_cols=93 Identities=19% Similarity=0.224 Sum_probs=56.4
Q ss_pred ccCCCCCCEEEEEcC--CCcHHHHHHHH-cCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccc-------ccC
Q 014247 107 NQSFIEGKVVVDVGC--GTGILSIFCAQ-AGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVED-------VEI 175 (428)
Q Consensus 107 ~~~~~~~~~VLDiGc--GtG~ls~~la~-~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~-------l~~ 175 (428)
.....++++||-.|+ |.|..+..+++ .|+ +|++++.+ +.++.+++. +.. .++..+-.+ ...
T Consensus 135 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~-~V~~~~~~~~~~~~~~~~----g~~---~~~~~~~~~~~~~~~~~~~ 206 (327)
T 1qor_A 135 TYEIKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALKA----GAW---QVINYREEDLVERLKEITG 206 (327)
T ss_dssp TSCCCTTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHH----TCS---EEEETTTSCHHHHHHHHTT
T ss_pred hhCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHc----CCC---EEEECCCccHHHHHHHHhC
Confidence 445678999999994 34555555555 487 89999998 666665542 221 122211111 111
Q ss_pred CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 176 DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 176 ~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
...+|+|+.+. + . ..++...++|+++|+++.-
T Consensus 207 ~~~~D~vi~~~-g-----~----~~~~~~~~~l~~~G~iv~~ 238 (327)
T 1qor_A 207 GKKVRVVYDSV-G-----R----DTWERSLDCLQRRGLMVSF 238 (327)
T ss_dssp TCCEEEEEECS-C-----G----GGHHHHHHTEEEEEEEEEC
T ss_pred CCCceEEEECC-c-----h----HHHHHHHHHhcCCCEEEEE
Confidence 24699999753 1 1 2345666789999988753
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=90.68 E-value=0.12 Score=48.24 Aligned_cols=89 Identities=15% Similarity=0.078 Sum_probs=56.0
Q ss_pred CCCCCEEEEEcC--CCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccc-ccccC-CCceeEEE
Q 014247 110 FIEGKVVVDVGC--GTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRV-EDVEI-DEEVDVII 183 (428)
Q Consensus 110 ~~~~~~VLDiGc--GtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~-~~l~~-~~~~DlVv 183 (428)
..++++||-+|+ |.|.++..+++. |+ +|++++.+ +..+.+++ .|.. .++..+- .++.. -..+|+|+
T Consensus 123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~----~ga~---~~~~~~~~~~~~~~~~~~d~vi 194 (302)
T 1iz0_A 123 ARPGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKLALPLA----LGAE---EAATYAEVPERAKAWGGLDLVL 194 (302)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSGGGSHHHHH----TTCS---EEEEGGGHHHHHHHTTSEEEEE
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHh----cCCC---EEEECCcchhHHHHhcCceEEE
Confidence 578999999998 356677677665 77 89999998 65555533 3332 2222111 11100 05799998
Q ss_pred EecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 184 SEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 184 s~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
. . +. ..+....+.|+++|+++..
T Consensus 195 d-~-g~---------~~~~~~~~~l~~~G~~v~~ 217 (302)
T 1iz0_A 195 E-V-RG---------KEVEESLGLLAHGGRLVYI 217 (302)
T ss_dssp E-C-SC---------TTHHHHHTTEEEEEEEEEC
T ss_pred E-C-CH---------HHHHHHHHhhccCCEEEEE
Confidence 6 4 21 1345667889999988753
|
| >1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A | Back alignment and structure |
|---|
Probab=90.62 E-value=0.45 Score=45.59 Aligned_cols=102 Identities=21% Similarity=0.235 Sum_probs=55.8
Q ss_pred HHHhccCCCCCCEEEEEcC--CCcHHHHHHHHc-CCCeEEEEeChHHHHHHHHHHHHCCCCCcEEEEEc------ccccc
Q 014247 103 AIMQNQSFIEGKVVVDVGC--GTGILSIFCAQA-GAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHG------RVEDV 173 (428)
Q Consensus 103 ~i~~~~~~~~~~~VLDiGc--GtG~ls~~la~~-g~~~V~giD~s~~~~~a~~~~~~~~~~~~v~~~~~------d~~~l 173 (428)
++.......+|.+||-+|+ |.|.++..+|+. |++.|..++.++.....++.++..|.. .++.. ++.++
T Consensus 158 ~l~~~~~~~~g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~---~vi~~~~~~~~~~~~~ 234 (357)
T 1zsy_A 158 MLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLKSLGAE---HVITEEELRRPEMKNF 234 (357)
T ss_dssp HHHHSSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEECCCSCHHHHHHHHHHTTCS---EEEEHHHHHSGGGGGT
T ss_pred HHHHHhccCCCCEEEEeCCcCHHHHHHHHHHHHcCCEEEEEecCccchHHHHHHHHhcCCc---EEEecCcchHHHHHHH
Confidence 3334456678999999997 457788888876 885555555542111112233344432 22322 12222
Q ss_pred cCC-CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 174 EID-EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 174 ~~~-~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
... ..+|+|+-.. + . . .+ ....++|+++|+++..
T Consensus 235 ~~~~~~~Dvvid~~-g----~-~---~~-~~~~~~l~~~G~iv~~ 269 (357)
T 1zsy_A 235 FKDMPQPRLALNCV-G----G-K---SS-TELLRQLARGGTMVTY 269 (357)
T ss_dssp TSSSCCCSEEEESS-C----H-H---HH-HHHHTTSCTTCEEEEC
T ss_pred HhCCCCceEEEECC-C----c-H---HH-HHHHHhhCCCCEEEEE
Confidence 111 2599998632 1 1 1 12 2356889999998754
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=90.55 E-value=0.42 Score=45.47 Aligned_cols=91 Identities=18% Similarity=0.169 Sum_probs=57.4
Q ss_pred CCCCCCEEEEEcCCC-cHHHHHHHHc---CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEc----c-cccccCCCc
Q 014247 109 SFIEGKVVVDVGCGT-GILSIFCAQA---GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHG----R-VEDVEIDEE 178 (428)
Q Consensus 109 ~~~~~~~VLDiGcGt-G~ls~~la~~---g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~----d-~~~l~~~~~ 178 (428)
.. ++.+||-+|+|. |.++..+|+. |+ +|++++.+ +-.+.+++. |.. .++.. + +.++.....
T Consensus 168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga-~Vi~~~~~~~~~~~~~~l----Ga~---~vi~~~~~~~~~~~~~~g~g 238 (344)
T 2h6e_A 168 KF-AEPVVIVNGIGGLAVYTIQILKALMKNI-TIVGISRSKKHRDFALEL----GAD---YVSEMKDAESLINKLTDGLG 238 (344)
T ss_dssp TC-SSCEEEEECCSHHHHHHHHHHHHHCTTC-EEEEECSCHHHHHHHHHH----TCS---EEECHHHHHHHHHHHHTTCC
T ss_pred CC-CCCEEEEECCCHHHHHHHHHHHHhcCCC-EEEEEeCCHHHHHHHHHh----CCC---EEeccccchHHHHHhhcCCC
Confidence 55 899999999974 6666666664 66 79999998 666666542 321 22221 1 111221237
Q ss_pred eeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 179 VDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 179 ~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
+|+|+... + . ...+....++|+++|+++..
T Consensus 239 ~D~vid~~-g----~----~~~~~~~~~~l~~~G~iv~~ 268 (344)
T 2h6e_A 239 ASIAIDLV-G----T----EETTYNLGKLLAQEGAIILV 268 (344)
T ss_dssp EEEEEESS-C----C----HHHHHHHHHHEEEEEEEEEC
T ss_pred ccEEEECC-C----C----hHHHHHHHHHhhcCCEEEEe
Confidence 99999743 1 1 23456667889999988753
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=90.50 E-value=0.89 Score=47.59 Aligned_cols=106 Identities=15% Similarity=0.137 Sum_probs=65.5
Q ss_pred CCCEEEEEcCCCcHHHHHHHHc-----------CC--CeEEEEeC---h-HHHHHHH-----------HHHHHCCC----
Q 014247 112 EGKVVVDVGCGTGILSIFCAQA-----------GA--KRVYAVDA---S-DIAVQAN-----------EVVKANNL---- 159 (428)
Q Consensus 112 ~~~~VLDiGcGtG~ls~~la~~-----------g~--~~V~giD~---s-~~~~~a~-----------~~~~~~~~---- 159 (428)
+.-+|||+|-|+|...+.+.+. .. -+++++|. + +.+..+. +.......
T Consensus 66 ~~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (676)
T 3ps9_A 66 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 145 (676)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSE
T ss_pred CceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCC
Confidence 4469999999999876655442 01 16899998 6 5554322 22222211
Q ss_pred ---------CCcEEEEEcccccccC------CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 160 ---------TDKVIVLHGRVEDVEI------DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 160 ---------~~~v~~~~~d~~~l~~------~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
.-.+++..+|+.+.-. ...||+|+...+......+---..+++.+.++++|||.+...
T Consensus 146 ~~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~ 218 (676)
T 3ps9_A 146 CHRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATF 218 (676)
T ss_dssp EEEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEEEES
T ss_pred ceEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEEEec
Confidence 0135667777765311 267999998764332222222467889999999999998743
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=90.44 E-value=0.16 Score=48.36 Aligned_cols=98 Identities=18% Similarity=0.021 Sum_probs=57.0
Q ss_pred cCCCCCCEEEEEcCCCc-HHHHHHHH-cCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccc----cccCCCcee
Q 014247 108 QSFIEGKVVVDVGCGTG-ILSIFCAQ-AGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVE----DVEIDEEVD 180 (428)
Q Consensus 108 ~~~~~~~~VLDiGcGtG-~ls~~la~-~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~----~l~~~~~~D 180 (428)
....+|++||-+|+|.+ .++..+++ .+..+|+++|.+ +-++.+++ .+...-+..-..|.. ++.....+|
T Consensus 159 ~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~----~Ga~~~i~~~~~~~~~~v~~~t~g~g~d 234 (348)
T 4eez_A 159 SGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKK----IGADVTINSGDVNPVDEIKKITGGLGVQ 234 (348)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHH----TTCSEEEEC-CCCHHHHHHHHTTSSCEE
T ss_pred cCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhh----cCCeEEEeCCCCCHHHHhhhhcCCCCce
Confidence 34578999999999864 44444444 566699999999 65554433 343221222222221 112224577
Q ss_pred EEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccC
Q 014247 181 VIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 181 lVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
+++.... -...+....+.|+++|+++...
T Consensus 235 ~~~~~~~---------~~~~~~~~~~~l~~~G~~v~~g 263 (348)
T 4eez_A 235 SAIVCAV---------ARIAFEQAVASLKPMGKMVAVA 263 (348)
T ss_dssp EEEECCS---------CHHHHHHHHHTEEEEEEEEECC
T ss_pred EEEEecc---------CcchhheeheeecCCceEEEEe
Confidence 7775321 1234556678899999887543
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=90.35 E-value=0.43 Score=45.46 Aligned_cols=93 Identities=19% Similarity=0.287 Sum_probs=57.4
Q ss_pred cCCCCCCEEEEEcCCC--cHHHHHHHH-c-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEc-c------cccccC
Q 014247 108 QSFIEGKVVVDVGCGT--GILSIFCAQ-A-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHG-R------VEDVEI 175 (428)
Q Consensus 108 ~~~~~~~~VLDiGcGt--G~ls~~la~-~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~-d------~~~l~~ 175 (428)
....++++||-.|+|. |..+..+++ . |+ +|+++|.+ +..+.+++. +.. .++.. + +.++..
T Consensus 166 ~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga-~Vi~~~~~~~~~~~~~~~----g~~---~~~~~~~~~~~~~~~~~~~ 237 (347)
T 1jvb_A 166 ASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGA-TIIGVDVREEAVEAAKRA----GAD---YVINASMQDPLAEIRRITE 237 (347)
T ss_dssp TTCCTTCEEEEETTTSHHHHHHHHHHHHHTCC-EEEEEESSHHHHHHHHHH----TCS---EEEETTTSCHHHHHHHHTT
T ss_pred cCCCCCCEEEEECCCccHHHHHHHHHHHcCCC-eEEEEcCCHHHHHHHHHh----CCC---EEecCCCccHHHHHHHHhc
Confidence 4567899999999984 445544544 4 77 89999998 666665432 321 12221 1 111111
Q ss_pred CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 176 DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 176 ~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
.+.+|+|+... + ....++...++|+++|+++.-
T Consensus 238 ~~~~d~vi~~~-g--------~~~~~~~~~~~l~~~G~iv~~ 270 (347)
T 1jvb_A 238 SKGVDAVIDLN-N--------SEKTLSVYPKALAKQGKYVMV 270 (347)
T ss_dssp TSCEEEEEESC-C--------CHHHHTTGGGGEEEEEEEEEC
T ss_pred CCCceEEEECC-C--------CHHHHHHHHHHHhcCCEEEEE
Confidence 14799999743 1 123466677899999988753
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=90.25 E-value=0.2 Score=48.08 Aligned_cols=96 Identities=16% Similarity=0.233 Sum_probs=57.5
Q ss_pred hccCCCCC--CEEEEEcCC--CcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccc----c-
Q 014247 106 QNQSFIEG--KVVVDVGCG--TGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDV----E- 174 (428)
Q Consensus 106 ~~~~~~~~--~~VLDiGcG--tG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l----~- 174 (428)
+.....++ ++||-.|++ .|..+..+++. |+++|++++.+ +-.+.+++. .+.. .++..+-.++ .
T Consensus 152 ~~~~~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~---~g~~---~~~d~~~~~~~~~~~~ 225 (357)
T 2zb4_A 152 EKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSE---LGFD---AAINYKKDNVAEQLRE 225 (357)
T ss_dssp HHSCCCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT---SCCS---EEEETTTSCHHHHHHH
T ss_pred HhcCCCCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHH---cCCc---eEEecCchHHHHHHHH
Confidence 44456788 999999983 45555555554 77689999998 555544331 2321 1222111111 0
Q ss_pred -CCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 175 -IDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 175 -~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
..+.+|+|+.+. + ...+....++|+++|+++..
T Consensus 226 ~~~~~~d~vi~~~-G---------~~~~~~~~~~l~~~G~iv~~ 259 (357)
T 2zb4_A 226 SCPAGVDVYFDNV-G---------GNISDTVISQMNENSHIILC 259 (357)
T ss_dssp HCTTCEEEEEESC-C---------HHHHHHHHHTEEEEEEEEEC
T ss_pred hcCCCCCEEEECC-C---------HHHHHHHHHHhccCcEEEEE
Confidence 013699999753 2 13456677889999998753
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=90.18 E-value=0.091 Score=50.24 Aligned_cols=91 Identities=24% Similarity=0.295 Sum_probs=56.9
Q ss_pred hccCCCCCCEEEEEcC-C-CcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccc-------c
Q 014247 106 QNQSFIEGKVVVDVGC-G-TGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDV-------E 174 (428)
Q Consensus 106 ~~~~~~~~~~VLDiGc-G-tG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l-------~ 174 (428)
+.....++++||-+|+ | .|.++..+++. |+ +|+++ .+ +-++.+++ .|.. . +. +-.++ .
T Consensus 144 ~~~~~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga-~Vi~~-~~~~~~~~~~~----lGa~--~--i~-~~~~~~~~~~~~~ 212 (343)
T 3gaz_A 144 DRAQVQDGQTVLIQGGGGGVGHVAIQIALARGA-RVFAT-ARGSDLEYVRD----LGAT--P--ID-ASREPEDYAAEHT 212 (343)
T ss_dssp TTTCCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEE-ECHHHHHHHHH----HTSE--E--EE-TTSCHHHHHHHHH
T ss_pred HhcCCCCCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEE-eCHHHHHHHHH----cCCC--E--ec-cCCCHHHHHHHHh
Confidence 4456678999999994 3 46777777775 77 89999 66 65555543 2321 1 22 21111 1
Q ss_pred CCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 175 IDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 175 ~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
....+|+|+-.. + . ..+....+.|+++|+++..
T Consensus 213 ~~~g~D~vid~~-g----~-----~~~~~~~~~l~~~G~iv~~ 245 (343)
T 3gaz_A 213 AGQGFDLVYDTL-G----G-----PVLDASFSAVKRFGHVVSC 245 (343)
T ss_dssp TTSCEEEEEESS-C----T-----HHHHHHHHHEEEEEEEEES
T ss_pred cCCCceEEEECC-C----c-----HHHHHHHHHHhcCCeEEEE
Confidence 125799998643 1 1 2455666789999998854
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=90.12 E-value=0.097 Score=49.75 Aligned_cols=94 Identities=19% Similarity=0.238 Sum_probs=57.6
Q ss_pred hccCCCCCCEEEEEcC--CCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccc-------cc
Q 014247 106 QNQSFIEGKVVVDVGC--GTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVED-------VE 174 (428)
Q Consensus 106 ~~~~~~~~~~VLDiGc--GtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~-------l~ 174 (428)
+.....++++||-.|+ |.|..+..+++. |+ +|++++.+ +.++.+++. +.. .++..+-.+ ..
T Consensus 139 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~-~Vi~~~~~~~~~~~~~~~----g~~---~~~d~~~~~~~~~i~~~~ 210 (333)
T 1wly_A 139 QTHKVKPGDYVLIHAAAGGMGHIMVPWARHLGA-TVIGTVSTEEKAETARKL----GCH---HTINYSTQDFAEVVREIT 210 (333)
T ss_dssp TTSCCCTTCEEEETTTTSTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHH----TCS---EEEETTTSCHHHHHHHHH
T ss_pred HhhCCCCCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc----CCC---EEEECCCHHHHHHHHHHh
Confidence 3445678999999995 556666666554 77 89999999 666666442 221 122211111 11
Q ss_pred CCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 175 IDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 175 ~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
....+|+|+... +. ..++...++|+++|+++..
T Consensus 211 ~~~~~d~vi~~~-g~---------~~~~~~~~~l~~~G~iv~~ 243 (333)
T 1wly_A 211 GGKGVDVVYDSI-GK---------DTLQKSLDCLRPRGMCAAY 243 (333)
T ss_dssp TTCCEEEEEECS-CT---------TTHHHHHHTEEEEEEEEEC
T ss_pred CCCCCeEEEECC-cH---------HHHHHHHHhhccCCEEEEE
Confidence 124699999743 21 2345666789999988754
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=90.11 E-value=0.55 Score=46.70 Aligned_cols=92 Identities=21% Similarity=0.261 Sum_probs=57.8
Q ss_pred cCCCCCCEEEEEcC-C-CcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccc-------------
Q 014247 108 QSFIEGKVVVDVGC-G-TGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRV------------- 170 (428)
Q Consensus 108 ~~~~~~~~VLDiGc-G-tG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~------------- 170 (428)
....+|.+||-+|+ | .|.++..+|+. |+ +|++++.+ +-++.+++. |.. .++...-
T Consensus 224 ~~~~~g~~VlV~GasG~vG~~avqlak~~Ga-~vi~~~~~~~~~~~~~~l----Ga~---~vi~~~~~d~~~~~~~~~~~ 295 (456)
T 3krt_A 224 AGMKQGDNVLIWGASGGLGSYATQFALAGGA-NPICVVSSPQKAEICRAM----GAE---AIIDRNAEGYRFWKDENTQD 295 (456)
T ss_dssp TCCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHH----TCC---EEEETTTTTCCSEEETTEEC
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-eEEEEECCHHHHHHHHhh----CCc---EEEecCcCcccccccccccc
Confidence 45678999999997 3 47777777776 77 88888888 666666442 332 1222111
Q ss_pred -----------ccccCCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 171 -----------EDVEIDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 171 -----------~~l~~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
.++.....+|+|+-.. + - ..+....++|++||+++..
T Consensus 296 ~~~~~~~~~~i~~~t~g~g~Dvvid~~-G--------~-~~~~~~~~~l~~~G~iv~~ 343 (456)
T 3krt_A 296 PKEWKRFGKRIRELTGGEDIDIVFEHP-G--------R-ETFGASVFVTRKGGTITTC 343 (456)
T ss_dssp HHHHHHHHHHHHHHHTSCCEEEEEECS-C--------H-HHHHHHHHHEEEEEEEEES
T ss_pred hHHHHHHHHHHHHHhCCCCCcEEEEcC-C--------c-hhHHHHHHHhhCCcEEEEE
Confidence 1111125799998643 1 1 2455666789999998854
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=90.07 E-value=2.5 Score=38.13 Aligned_cols=104 Identities=20% Similarity=0.243 Sum_probs=65.3
Q ss_pred CCCCEEEEEcCC--CcH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC---------
Q 014247 111 IEGKVVVDVGCG--TGI---LSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI--------- 175 (428)
Q Consensus 111 ~~~~~VLDiGcG--tG~---ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~--------- 175 (428)
..+++||-.|++ +|+ ++..+++.|+ +|+.++.+ ...+.+.+.....+- .++.++.+|+.+...
T Consensus 5 l~~k~vlVTGasg~~GIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~~ 82 (266)
T 3oig_A 5 LEGRNIVVMGVANKRSIAWGIARSLHEAGA-RLIFTYAGERLEKSVHELAGTLDR-NDSIILPCDVTNDAEIETCFASIK 82 (266)
T ss_dssp CTTCEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHTSSS-CCCEEEECCCSSSHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEecCchHHHHHHHHHHHhcCC-CCceEEeCCCCCHHHHHHHHHHHH
Confidence 567899999987 444 5667777788 79999887 555555555444332 258999999887431
Q ss_pred --CCceeEEEEec-chh-------hhc-chhhH-----------HHHHHHHhcccccCeEEEc
Q 014247 176 --DEEVDVIISEW-MGY-------MLL-YESML-----------GSVITARDRWLKRGGLILP 216 (428)
Q Consensus 176 --~~~~DlVvs~~-~~~-------~l~-~~~~~-----------~~~l~~~~~~LkpgG~lv~ 216 (428)
-+++|+++.+. +.. ... ....+ -.+++.+...++++|.++.
T Consensus 83 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~ 145 (266)
T 3oig_A 83 EQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVT 145 (266)
T ss_dssp HHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEE
T ss_pred HHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEE
Confidence 04789988754 110 000 01111 2345667778888887764
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=89.90 E-value=0.075 Score=51.08 Aligned_cols=94 Identities=18% Similarity=0.114 Sum_probs=56.0
Q ss_pred hccCCCCCCEEEEEcC--CCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccc-------cc
Q 014247 106 QNQSFIEGKVVVDVGC--GTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVED-------VE 174 (428)
Q Consensus 106 ~~~~~~~~~~VLDiGc--GtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~-------l~ 174 (428)
+.....++++||-.|+ |.|..+..+++. |+ +|++++.+ +.++.+++. +.. .++..+-.+ ..
T Consensus 156 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~----g~~---~~~~~~~~~~~~~~~~~~ 227 (354)
T 2j8z_A 156 LVGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGA-IPLVTAGSQKKLQMAEKL----GAA---AGFNYKKEDFSEATLKFT 227 (354)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHH----TCS---EEEETTTSCHHHHHHHHT
T ss_pred HhcCCCCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHc----CCc---EEEecCChHHHHHHHHHh
Confidence 3345678999999985 345555555554 77 89999998 666666432 221 122211111 11
Q ss_pred CCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 175 IDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 175 ~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
....+|+|+... +. . .+....++|+++|+++..
T Consensus 228 ~~~~~d~vi~~~-G~-----~----~~~~~~~~l~~~G~iv~~ 260 (354)
T 2j8z_A 228 KGAGVNLILDCI-GG-----S----YWEKNVNCLALDGRWVLY 260 (354)
T ss_dssp TTSCEEEEEESS-CG-----G----GHHHHHHHEEEEEEEEEC
T ss_pred cCCCceEEEECC-Cc-----h----HHHHHHHhccCCCEEEEE
Confidence 124699999753 21 1 234556789999988753
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=89.39 E-value=0.22 Score=46.52 Aligned_cols=58 Identities=17% Similarity=0.189 Sum_probs=40.6
Q ss_pred cEEEEEcccccc-c-C-CCceeEEEEecchhhhc-----------------chhhHHHHHHHHhcccccCeEEEccCC
Q 014247 162 KVIVLHGRVEDV-E-I-DEEVDVIISEWMGYMLL-----------------YESMLGSVITARDRWLKRGGLILPSYA 219 (428)
Q Consensus 162 ~v~~~~~d~~~l-~-~-~~~~DlVvs~~~~~~l~-----------------~~~~~~~~l~~~~~~LkpgG~lv~~~~ 219 (428)
+++++++|+.+. . + +++||+|++++.-.... +...+..++.++.++|+|||.+++...
T Consensus 21 ~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~ 98 (297)
T 2zig_A 21 VHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVG 98 (297)
T ss_dssp CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEEC
Confidence 579999998873 2 2 37999999987421110 111245678899999999999987544
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=89.14 E-value=1.2 Score=41.86 Aligned_cols=94 Identities=22% Similarity=0.212 Sum_probs=57.9
Q ss_pred hccCCCCCCEEEEEc-CC-CcHHHHHHHHc-CCCeEEEEeChHHHHHHHHHHHHCCCCCcEEEEEccccc-cc-CCCcee
Q 014247 106 QNQSFIEGKVVVDVG-CG-TGILSIFCAQA-GAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVED-VE-IDEEVD 180 (428)
Q Consensus 106 ~~~~~~~~~~VLDiG-cG-tG~ls~~la~~-g~~~V~giD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~-l~-~~~~~D 180 (428)
+.....+|.+||-+| +| .|.++..+|+. |+ +|++++.++-.+.+++ .|.. .++..+-.+ +. .-..+|
T Consensus 146 ~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga-~vi~~~~~~~~~~~~~----lGa~---~~i~~~~~~~~~~~~~g~D 217 (321)
T 3tqh_A 146 NQAEVKQGDVVLIHAGAGGVGHLAIQLAKQKGT-TVITTASKRNHAFLKA----LGAE---QCINYHEEDFLLAISTPVD 217 (321)
T ss_dssp HHTTCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEECHHHHHHHHH----HTCS---EEEETTTSCHHHHCCSCEE
T ss_pred HhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCC-EEEEEeccchHHHHHH----cCCC---EEEeCCCcchhhhhccCCC
Confidence 445678899999997 55 47777777776 77 8999985543544443 3432 223222111 11 115799
Q ss_pred EEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 181 VIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 181 lVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
+|+-.. + -+.+ ....++|+++|+++..
T Consensus 218 ~v~d~~-g--------~~~~-~~~~~~l~~~G~iv~~ 244 (321)
T 3tqh_A 218 AVIDLV-G--------GDVG-IQSIDCLKETGCIVSV 244 (321)
T ss_dssp EEEESS-C--------HHHH-HHHGGGEEEEEEEEEC
T ss_pred EEEECC-C--------cHHH-HHHHHhccCCCEEEEe
Confidence 998632 1 1222 5677899999998853
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=88.92 E-value=1.7 Score=39.22 Aligned_cols=70 Identities=17% Similarity=0.217 Sum_probs=50.5
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC-----------
Q 014247 111 IEGKVVVDVGCGTGI---LSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI----------- 175 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~---ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~----------- 175 (428)
..+++||-.|++.|+ ++..+++.|+ +|+.++.+ +.++...+.+ ..++.++.+|+.+...
T Consensus 6 l~gk~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (255)
T 4eso_A 6 YQGKKAIVIGGTHGMGLATVRRLVEGGA-EVLLTGRNESNIARIREEF-----GPRVHALRSDIADLNEIAVLGAAAGQT 79 (255)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH-----GGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh-----CCcceEEEccCCCHHHHHHHHHHHHHH
Confidence 568899999988874 5566677788 89999998 6555544433 2358999999877431
Q ss_pred CCceeEEEEec
Q 014247 176 DEEVDVIISEW 186 (428)
Q Consensus 176 ~~~~DlVvs~~ 186 (428)
-++.|+++.+.
T Consensus 80 ~g~id~lv~nA 90 (255)
T 4eso_A 80 LGAIDLLHINA 90 (255)
T ss_dssp HSSEEEEEECC
T ss_pred hCCCCEEEECC
Confidence 15789998754
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=88.85 E-value=1 Score=42.60 Aligned_cols=58 Identities=16% Similarity=0.211 Sum_probs=42.9
Q ss_pred HHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeChH----HHHHHHHHHHHC
Q 014247 98 ETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASD----IAVQANEVVKAN 157 (428)
Q Consensus 98 ~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s~----~~~~a~~~~~~~ 157 (428)
..+.+.+.+.. ..++..|||.-||+|..+..+.+.|. +.+|+|+++ .++.+++++...
T Consensus 229 ~~l~~~~i~~~-~~~~~~vlDpF~GsGtt~~aa~~~~r-~~ig~e~~~~~~~~~~~~~~Rl~~~ 290 (319)
T 1eg2_A 229 AAVIERLVRAL-SHPGSTVLDFFAGSGVTARVAIQEGR-NSICTDAAPVFKEYYQKQLTFLQDD 290 (319)
T ss_dssp HHHHHHHHHHH-SCTTCEEEETTCTTCHHHHHHHHHTC-EEEEEESSTHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHh-CCCCCEEEecCCCCCHHHHHHHHcCC-cEEEEECCccHHHHHHHHHHHHHHc
Confidence 44455555544 36889999999999999999999876 899999994 566677776543
|
| >3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A | Back alignment and structure |
|---|
Probab=88.70 E-value=0.56 Score=47.00 Aligned_cols=71 Identities=13% Similarity=0.149 Sum_probs=51.1
Q ss_pred CCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC----------------
Q 014247 113 GKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI---------------- 175 (428)
Q Consensus 113 ~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~---------------- 175 (428)
..+++|+-||.|.+++-+.++|+..|.++|++ ..++.-+.+. +......++++|+.++..
T Consensus 88 ~~~viDLFaG~GGlslG~~~aG~~~v~avE~d~~A~~ty~~N~---~~~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~i~ 164 (482)
T 3me5_A 88 AFRFIDLFAGIGGIRRGFESIGGQCVFTSEWNKHAVRTYKANH---YCDPATHHFNEDIRDITLSHQEGVSDEAAAEHIR 164 (482)
T ss_dssp SEEEEEESCTTSHHHHHHHTTTEEEEEEECCCHHHHHHHHHHS---CCCTTTCEEESCTHHHHCTTCTTSCHHHHHHHHH
T ss_pred cceEEEecCCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhc---ccCCCcceeccchhhhhhccccccchhhHHhhhh
Confidence 35899999999999999999999789999999 5544443332 111124567789887642
Q ss_pred --CCceeEEEEec
Q 014247 176 --DEEVDVIISEW 186 (428)
Q Consensus 176 --~~~~DlVvs~~ 186 (428)
...+|+|+..+
T Consensus 165 ~~~~~~Dvl~gGp 177 (482)
T 3me5_A 165 QHIPEHDVLLAGF 177 (482)
T ss_dssp HHSCCCSEEEEEC
T ss_pred hcCCCCCEEEecC
Confidence 14689999854
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=88.31 E-value=3.5 Score=38.00 Aligned_cols=103 Identities=24% Similarity=0.317 Sum_probs=64.7
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCeEEEEeCh-H-HHHHHHHHHHHCCCCCcEEEEEcccccccC----------
Q 014247 111 IEGKVVVDVGCGTGI---LSIFCAQAGAKRVYAVDAS-D-IAVQANEVVKANNLTDKVIVLHGRVEDVEI---------- 175 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~---ls~~la~~g~~~V~giD~s-~-~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~---------- 175 (428)
..+++||-.|++.|+ ++..+++.|+ +|+.++.+ . ..+.+.+.+...+ .++.++.+|+.+...
T Consensus 45 l~gk~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~ 121 (291)
T 3ijr_A 45 LKGKNVLITGGDSGIGRAVSIAFAKEGA-NIAIAYLDEEGDANETKQYVEKEG--VKCVLLPGDLSDEQHCKDIVQETVR 121 (291)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHTTT--CCEEEEESCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHH
Confidence 568899999988874 5566677787 89999987 4 3444444444433 468999999876421
Q ss_pred -CCceeEEEEec-chh---hhc--chhh-----------HHHHHHHHhcccccCeEEEc
Q 014247 176 -DEEVDVIISEW-MGY---MLL--YESM-----------LGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 176 -~~~~DlVvs~~-~~~---~l~--~~~~-----------~~~~l~~~~~~LkpgG~lv~ 216 (428)
-+++|++|.+. ... .+. ...+ .-.+++.+.+.|+.+|.++.
T Consensus 122 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~ 180 (291)
T 3ijr_A 122 QLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIIN 180 (291)
T ss_dssp HHSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEE
T ss_pred HcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEE
Confidence 14789999763 100 010 1111 22345666777888887664
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=88.05 E-value=5.2 Score=36.85 Aligned_cols=72 Identities=15% Similarity=0.213 Sum_probs=50.4
Q ss_pred CCCCEEEEEcCCC--cH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC---------
Q 014247 111 IEGKVVVDVGCGT--GI---LSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI--------- 175 (428)
Q Consensus 111 ~~~~~VLDiGcGt--G~---ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~--------- 175 (428)
..+++||-.|++. |+ ++..+++.|+ +|+.++.+ ...+.+.+.....+ ++.++.+|+.+...
T Consensus 29 l~gk~~lVTGasg~~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dv~d~~~v~~~~~~~~ 104 (293)
T 3grk_A 29 LQGKRGLILGVANNRSIAWGIAKAAREAGA-ELAFTYQGDALKKRVEPLAEELG---AFVAGHCDVADAASIDAVFETLE 104 (293)
T ss_dssp TTTCEEEEECCCSSSSHHHHHHHHHHHTTC-EEEEEECSHHHHHHHHHHHHHHT---CEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC---CceEEECCCCCHHHHHHHHHHHH
Confidence 5788999999873 33 5667777788 79999988 55555555444432 48889999876421
Q ss_pred --CCceeEEEEec
Q 014247 176 --DEEVDVIISEW 186 (428)
Q Consensus 176 --~~~~DlVvs~~ 186 (428)
-++.|++|.+.
T Consensus 105 ~~~g~iD~lVnnA 117 (293)
T 3grk_A 105 KKWGKLDFLVHAI 117 (293)
T ss_dssp HHTSCCSEEEECC
T ss_pred HhcCCCCEEEECC
Confidence 15789999864
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=87.73 E-value=0.7 Score=43.42 Aligned_cols=86 Identities=19% Similarity=0.226 Sum_probs=54.3
Q ss_pred CCEEEEEcC--CCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEc-cccccc--CCCceeEEEEe
Q 014247 113 GKVVVDVGC--GTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHG-RVEDVE--IDEEVDVIISE 185 (428)
Q Consensus 113 ~~~VLDiGc--GtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~-d~~~l~--~~~~~DlVvs~ 185 (428)
+. ||-.|+ |.|.++..+|+. |+ +|++++.+ +-.+.+++. |.. .++.. +...+. ..+.+|+|+-.
T Consensus 148 g~-VlV~Ga~G~vG~~aiqla~~~Ga-~Vi~~~~~~~~~~~~~~l----Ga~---~vi~~~~~~~~~~~~~~~~d~v~d~ 218 (324)
T 3nx4_A 148 GE-VVVTGASGGVGSTAVALLHKLGY-QVAAVSGRESTHGYLKSL----GAN---RILSRDEFAESRPLEKQLWAGAIDT 218 (324)
T ss_dssp CC-EEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHHH----TCS---EEEEGGGSSCCCSSCCCCEEEEEES
T ss_pred Ce-EEEECCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhc----CCC---EEEecCCHHHHHhhcCCCccEEEEC
Confidence 45 999997 457778778876 77 89999988 766666542 322 22221 111111 12579998863
Q ss_pred cchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 186 WMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 186 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
. + . ..+....+.|+++|+++..
T Consensus 219 ~-g-----~----~~~~~~~~~l~~~G~iv~~ 240 (324)
T 3nx4_A 219 V-G-----D----KVLAKVLAQMNYGGCVAAC 240 (324)
T ss_dssp S-C-----H----HHHHHHHHTEEEEEEEEEC
T ss_pred C-C-----c----HHHHHHHHHHhcCCEEEEE
Confidence 2 1 1 1566777899999998854
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=87.58 E-value=1.5 Score=35.60 Aligned_cols=87 Identities=20% Similarity=0.108 Sum_probs=52.0
Q ss_pred CEEEEEcCCC-cH-HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC-----CCceeEEEEe
Q 014247 114 KVVVDVGCGT-GI-LSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI-----DEEVDVIISE 185 (428)
Q Consensus 114 ~~VLDiGcGt-G~-ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~-----~~~~DlVvs~ 185 (428)
.+|+=+|||. |. ++..|.+.|. .|+++|.+ +.++.+++ . .+.++.+|..+... -..+|+|++.
T Consensus 8 ~~viIiG~G~~G~~la~~L~~~g~-~v~vid~~~~~~~~~~~----~----g~~~i~gd~~~~~~l~~a~i~~ad~vi~~ 78 (140)
T 3fwz_A 8 NHALLVGYGRVGSLLGEKLLASDI-PLVVIETSRTRVDELRE----R----GVRAVLGNAANEEIMQLAHLECAKWLILT 78 (140)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHH----T----TCEEEESCTTSHHHHHHTTGGGCSEEEEC
T ss_pred CCEEEECcCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHH----c----CCCEEECCCCCHHHHHhcCcccCCEEEEE
Confidence 5788999875 32 3444555576 89999999 76655443 2 36788888765321 1578998873
Q ss_pred cchhhhcchhhHHHHHHHHhcccccCeEEE
Q 014247 186 WMGYMLLYESMLGSVITARDRWLKRGGLIL 215 (428)
Q Consensus 186 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv 215 (428)
. .... ....+-...+.+.|+..++
T Consensus 79 ~-----~~~~-~n~~~~~~a~~~~~~~~ii 102 (140)
T 3fwz_A 79 I-----PNGY-EAGEIVASARAKNPDIEII 102 (140)
T ss_dssp C-----SCHH-HHHHHHHHHHHHCSSSEEE
T ss_pred C-----CChH-HHHHHHHHHHHHCCCCeEE
Confidence 2 1111 1111222345567777665
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=87.24 E-value=2.2 Score=38.82 Aligned_cols=73 Identities=23% Similarity=0.287 Sum_probs=56.5
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC-----------
Q 014247 111 IEGKVVVDVGCGTGI---LSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI----------- 175 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~---ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~----------- 175 (428)
.+|+++|--|++.|+ .+..+++.|+ +|+.+|.+ +-++.+.+.++..+ .++.++.+|+.+...
T Consensus 5 L~gKvalVTGas~GIG~aiA~~la~~Ga-~Vv~~~~~~~~~~~~~~~i~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~~~ 81 (254)
T 4fn4_A 5 LKNKVVIVTGAGSGIGRAIAKKFALNDS-IVVAVELLEDRLNQIVQELRGMG--KEVLGVKADVSKKKDVEEFVRRTFET 81 (254)
T ss_dssp GTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 578999999999885 5667777888 89999999 77777777666655 358899999876421
Q ss_pred CCceeEEEEec
Q 014247 176 DEEVDVIISEW 186 (428)
Q Consensus 176 ~~~~DlVvs~~ 186 (428)
-++.|++|.+.
T Consensus 82 ~G~iDiLVNNA 92 (254)
T 4fn4_A 82 YSRIDVLCNNA 92 (254)
T ss_dssp HSCCCEEEECC
T ss_pred cCCCCEEEECC
Confidence 16899999864
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=87.17 E-value=3.2 Score=37.47 Aligned_cols=73 Identities=18% Similarity=0.234 Sum_probs=51.0
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCeEEEE-eCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC----------
Q 014247 111 IEGKVVVDVGCGTGI---LSIFCAQAGAKRVYAV-DAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI---------- 175 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~---ls~~la~~g~~~V~gi-D~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~---------- 175 (428)
..+++||-.|++.|+ ++..+++.|+ +|+.+ +.+ +..+.+.+.+...+ .++.++.+|+.+...
T Consensus 6 l~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~ 82 (259)
T 3edm_A 6 FTNRTIVVAGAGRDIGRACAIRFAQEGA-NVVLTYNGAAEGAATAVAEIEKLG--RSALAIKADLTNAAEVEAAISAAAD 82 (259)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECSSCHHHHHHHHHHHTTT--SCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHH
Confidence 568899999998874 5666777788 78877 666 65555555554433 358899999876421
Q ss_pred -CCceeEEEEec
Q 014247 176 -DEEVDVIISEW 186 (428)
Q Consensus 176 -~~~~DlVvs~~ 186 (428)
-++.|++|.+.
T Consensus 83 ~~g~id~lv~nA 94 (259)
T 3edm_A 83 KFGEIHGLVHVA 94 (259)
T ss_dssp HHCSEEEEEECC
T ss_pred HhCCCCEEEECC
Confidence 04789999764
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=86.85 E-value=1.6 Score=39.80 Aligned_cols=73 Identities=22% Similarity=0.255 Sum_probs=56.0
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC-----------
Q 014247 111 IEGKVVVDVGCGTGI---LSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI----------- 175 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~---ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~----------- 175 (428)
.+|+++|--|++.|+ .+..+++.|+ +|+.+|.+ +.++.+.+.+...+. ++..+.+|+.+...
T Consensus 7 L~gKvalVTGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~l~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~~ 83 (255)
T 4g81_D 7 LTGKTALVTGSARGLGFAYAEGLAAAGA-RVILNDIRATLLAESVDTLTRKGY--DAHGVAFDVTDELAIEAAFSKLDAE 83 (255)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHHHTTC--CEEECCCCTTCHHHHHHHHHHHHHT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC--cEEEEEeeCCCHHHHHHHHHHHHHH
Confidence 678999999999885 5677778888 89999999 777776666666543 58888999876421
Q ss_pred CCceeEEEEec
Q 014247 176 DEEVDVIISEW 186 (428)
Q Consensus 176 ~~~~DlVvs~~ 186 (428)
-++.|++|.+.
T Consensus 84 ~G~iDiLVNNA 94 (255)
T 4g81_D 84 GIHVDILINNA 94 (255)
T ss_dssp TCCCCEEEECC
T ss_pred CCCCcEEEECC
Confidence 26899999864
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=86.64 E-value=1.6 Score=41.86 Aligned_cols=83 Identities=22% Similarity=0.232 Sum_probs=50.2
Q ss_pred CCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeChH----HHHHHHHHHHHCCCCCcEEEEEcccccccC-------CCce
Q 014247 113 GKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDASD----IAVQANEVVKANNLTDKVIVLHGRVEDVEI-------DEEV 179 (428)
Q Consensus 113 ~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s~----~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~-------~~~~ 179 (428)
+++||-+|+|. |.++..+++. |+ +|++++.++ -++.+++ .|. ..+ | .+ .. ...+
T Consensus 181 g~~VlV~GaG~vG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~~----~ga----~~v--~-~~-~~~~~~~~~~~~~ 247 (366)
T 2cdc_A 181 CRKVLVVGTGPIGVLFTLLFRTYGL-EVWMANRREPTEVEQTVIEE----TKT----NYY--N-SS-NGYDKLKDSVGKF 247 (366)
T ss_dssp TCEEEEESCHHHHHHHHHHHHHHTC-EEEEEESSCCCHHHHHHHHH----HTC----EEE--E-CT-TCSHHHHHHHCCE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCccchHHHHHHHH----hCC----cee--c-hH-HHHHHHHHhCCCC
Confidence 89999999842 4455555554 88 899999863 3333332 232 222 2 21 11 1469
Q ss_pred eEEEEecchhhhcchhhHHHHH-HHHhcccccCeEEEcc
Q 014247 180 DVIISEWMGYMLLYESMLGSVI-TARDRWLKRGGLILPS 217 (428)
Q Consensus 180 DlVvs~~~~~~l~~~~~~~~~l-~~~~~~LkpgG~lv~~ 217 (428)
|+|+... + .. ..+ +...+.|+++|+++..
T Consensus 248 d~vid~~-g----~~----~~~~~~~~~~l~~~G~iv~~ 277 (366)
T 2cdc_A 248 DVIIDAT-G----AD----VNILGNVIPLLGRNGVLGLF 277 (366)
T ss_dssp EEEEECC-C----CC----THHHHHHGGGEEEEEEEEEC
T ss_pred CEEEECC-C----Ch----HHHHHHHHHHHhcCCEEEEE
Confidence 9999743 1 11 134 6677889999988754
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=86.34 E-value=3.3 Score=37.39 Aligned_cols=75 Identities=23% Similarity=0.339 Sum_probs=48.7
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC-----------
Q 014247 111 IEGKVVVDVGCGTGI---LSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI----------- 175 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~---ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~----------- 175 (428)
..+++||-.|++.|. ++..+++.|+ +|++++.+ +....+.+.+.......++.++.+|+.+...
T Consensus 5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 83 (267)
T 2gdz_A 5 VNGKVALVTGAAQGIGRAFAEALLLKGA-KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDH 83 (267)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHHH
Confidence 457899999987764 4555666787 89999988 5544443333221112358889999876421
Q ss_pred CCceeEEEEec
Q 014247 176 DEEVDVIISEW 186 (428)
Q Consensus 176 ~~~~DlVvs~~ 186 (428)
-+++|++|.+.
T Consensus 84 ~g~id~lv~~A 94 (267)
T 2gdz_A 84 FGRLDILVNNA 94 (267)
T ss_dssp HSCCCEEEECC
T ss_pred cCCCCEEEECC
Confidence 04689999864
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=86.20 E-value=1.7 Score=39.46 Aligned_cols=75 Identities=16% Similarity=0.216 Sum_probs=52.6
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC-------CCce
Q 014247 111 IEGKVVVDVGCGTGI---LSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI-------DEEV 179 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~---ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~-------~~~~ 179 (428)
..+++||-.|++.|+ ++..+++.|+ +|+.++.+ +-++.+.+.+...+....+.++.+|+.+... -++.
T Consensus 8 l~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~i 86 (267)
T 3t4x_A 8 LKGKTALVTGSTAGIGKAIATSLVAEGA-NVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEKYPKV 86 (267)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHHCCCC
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHhcCCC
Confidence 567899999988764 4566667788 89999998 6666555555544434468888888876321 1578
Q ss_pred eEEEEec
Q 014247 180 DVIISEW 186 (428)
Q Consensus 180 DlVvs~~ 186 (428)
|++|.+.
T Consensus 87 d~lv~nA 93 (267)
T 3t4x_A 87 DILINNL 93 (267)
T ss_dssp SEEEECC
T ss_pred CEEEECC
Confidence 9999864
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=86.14 E-value=4.2 Score=37.54 Aligned_cols=72 Identities=18% Similarity=0.222 Sum_probs=49.7
Q ss_pred CCCCEEEEEcCCC--cH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC---------
Q 014247 111 IEGKVVVDVGCGT--GI---LSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI--------- 175 (428)
Q Consensus 111 ~~~~~VLDiGcGt--G~---ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~--------- 175 (428)
..+++||-.|++. |+ ++..+++.|+ +|+.++.+ ...+.+.+.....+ .+.++.+|+.+...
T Consensus 28 l~~k~vlVTGasg~~GIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dv~d~~~v~~~~~~~~ 103 (296)
T 3k31_A 28 MEGKKGVIIGVANDKSLAWGIAKAVCAQGA-EVALTYLSETFKKRVDPLAESLG---VKLTVPCDVSDAESVDNMFKVLA 103 (296)
T ss_dssp TTTCEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHHT---CCEEEECCTTCHHHHHHHHHHHH
T ss_pred cCCCEEEEEeCCCCCCHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhcC---CeEEEEcCCCCHHHHHHHHHHHH
Confidence 4678999999864 43 5667777788 79999988 55555544444432 36788899876421
Q ss_pred --CCceeEEEEec
Q 014247 176 --DEEVDVIISEW 186 (428)
Q Consensus 176 --~~~~DlVvs~~ 186 (428)
-+++|++|.+.
T Consensus 104 ~~~g~iD~lVnnA 116 (296)
T 3k31_A 104 EEWGSLDFVVHAV 116 (296)
T ss_dssp HHHSCCSEEEECC
T ss_pred HHcCCCCEEEECC
Confidence 05789999864
|
| >1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A | Back alignment and structure |
|---|
Probab=86.00 E-value=0.87 Score=43.55 Aligned_cols=100 Identities=15% Similarity=0.105 Sum_probs=55.0
Q ss_pred HHhccCCCCC-CEEEEEcC--CCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEc------cccc
Q 014247 104 IMQNQSFIEG-KVVVDVGC--GTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHG------RVED 172 (428)
Q Consensus 104 i~~~~~~~~~-~~VLDiGc--GtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~------d~~~ 172 (428)
+.+.....+| .+||-+|+ |.|.++..+|+. |+ +|+++..+ +.+...++.+++.|.. .++.. ++.+
T Consensus 158 l~~~~~~~~g~~~VlV~Ga~G~vG~~aiqlak~~Ga-~vi~~~~~~~~~~~~~~~~~~lGa~---~vi~~~~~~~~~~~~ 233 (364)
T 1gu7_A 158 LTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNF-NSISVIRDRPNLDEVVASLKELGAT---QVITEDQNNSREFGP 233 (364)
T ss_dssp HHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTC-EEEEEECCCTTHHHHHHHHHHHTCS---EEEEHHHHHCGGGHH
T ss_pred HHHhhccCCCCcEEEECCCCcHHHHHHHHHHHHCCC-EEEEEecCccccHHHHHHHHhcCCe---EEEecCccchHHHHH
Confidence 3333456788 99999997 346777777775 77 67777644 3211111222333432 22221 1111
Q ss_pred -c---c--CCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 173 -V---E--IDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 173 -l---~--~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
+ . ....+|+|+-.. + -..+. ...++|+++|+++..
T Consensus 234 ~i~~~t~~~~~g~Dvvid~~-G--------~~~~~-~~~~~l~~~G~~v~~ 274 (364)
T 1gu7_A 234 TIKEWIKQSGGEAKLALNCV-G--------GKSST-GIARKLNNNGLMLTY 274 (364)
T ss_dssp HHHHHHHHHTCCEEEEEESS-C--------HHHHH-HHHHTSCTTCEEEEC
T ss_pred HHHHHhhccCCCceEEEECC-C--------chhHH-HHHHHhccCCEEEEe
Confidence 1 1 124699999642 1 11222 446889999998754
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=85.85 E-value=0.49 Score=44.82 Aligned_cols=59 Identities=14% Similarity=0.183 Sum_probs=41.9
Q ss_pred CcEEEEEccccc-cc-C-CCceeEEEEecchhhh-----------cchhhHHHHHHHHhcccccCeEEEccCC
Q 014247 161 DKVIVLHGRVED-VE-I-DEEVDVIISEWMGYML-----------LYESMLGSVITARDRWLKRGGLILPSYA 219 (428)
Q Consensus 161 ~~v~~~~~d~~~-l~-~-~~~~DlVvs~~~~~~l-----------~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 219 (428)
+...++++|..+ +. + +++||+|++++.-... .+...+..++.++.++|+|||.+++...
T Consensus 13 ~~~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~ 85 (323)
T 1boo_A 13 SNGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFG 85 (323)
T ss_dssp SSEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEEC
Confidence 357899999875 32 2 3789999998742111 1123477888999999999999987543
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=85.36 E-value=0.63 Score=44.54 Aligned_cols=93 Identities=19% Similarity=0.221 Sum_probs=55.0
Q ss_pred CCC-CCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEc-ccccc-cCCCceeEE
Q 014247 109 SFI-EGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHG-RVEDV-EIDEEVDVI 182 (428)
Q Consensus 109 ~~~-~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~-d~~~l-~~~~~~DlV 182 (428)
... +|.+||-+|+|. |.++..+|+. |+ +|++++.+ +-.+.+++ +.|... ++.. +...+ ...+.+|+|
T Consensus 176 ~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga-~Vi~~~~~~~~~~~~~~---~lGa~~---vi~~~~~~~~~~~~~g~D~v 248 (357)
T 2cf5_A 176 GLKQPGLRGGILGLGGVGHMGVKIAKAMGH-HVTVISSSNKKREEALQ---DLGADD---YVIGSDQAKMSELADSLDYV 248 (357)
T ss_dssp STTSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSTTHHHHHHT---TSCCSC---EEETTCHHHHHHSTTTEEEE
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHH---HcCCce---eeccccHHHHHHhcCCCCEE
Confidence 445 899999999863 5666666665 77 89999998 65544431 233322 2221 11111 112479999
Q ss_pred EEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 183 ISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 183 vs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
+-.. + ... .+....++|+++|+++..
T Consensus 249 id~~-g----~~~----~~~~~~~~l~~~G~iv~~ 274 (357)
T 2cf5_A 249 IDTV-P----VHH----ALEPYLSLLKLDGKLILM 274 (357)
T ss_dssp EECC-C----SCC----CSHHHHTTEEEEEEEEEC
T ss_pred EECC-C----ChH----HHHHHHHHhccCCEEEEe
Confidence 8642 1 111 134455789999998754
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=85.24 E-value=0.85 Score=45.06 Aligned_cols=94 Identities=17% Similarity=0.182 Sum_probs=56.8
Q ss_pred cCCCCCCEEEEEcC--CCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccc-------------
Q 014247 108 QSFIEGKVVVDVGC--GTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRV------------- 170 (428)
Q Consensus 108 ~~~~~~~~VLDiGc--GtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~------------- 170 (428)
....+|++||-.|+ |.|.++..+++. |+ +|++++.+ +-++.+++ .|....+.....+.
T Consensus 216 ~~~~~g~~VlV~GasG~iG~~a~qla~~~Ga-~vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~~~~~~~~~~~~ 290 (447)
T 4a0s_A 216 AQMKQGDIVLIWGASGGLGSYAIQFVKNGGG-IPVAVVSSAQKEAAVRA----LGCDLVINRAELGITDDIADDPRRVVE 290 (447)
T ss_dssp TCCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----TTCCCEEEHHHHTCCTTGGGCHHHHHH
T ss_pred cCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHh----cCCCEEEecccccccccccccccccch
Confidence 45678999999997 346677777775 76 88999888 66655533 34322111111111
Q ss_pred ---------ccccCCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 171 ---------EDVEIDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 171 ---------~~l~~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
.++. ...+|+|+-.. +. ..+....++|++||+++..
T Consensus 291 ~~~~~~~~v~~~~-g~g~Dvvid~~-G~---------~~~~~~~~~l~~~G~iv~~ 335 (447)
T 4a0s_A 291 TGRKLAKLVVEKA-GREPDIVFEHT-GR---------VTFGLSVIVARRGGTVVTC 335 (447)
T ss_dssp HHHHHHHHHHHHH-SSCCSEEEECS-CH---------HHHHHHHHHSCTTCEEEES
T ss_pred hhhHHHHHHHHHh-CCCceEEEECC-Cc---------hHHHHHHHHHhcCCEEEEE
Confidence 0111 35799999743 11 1345566789999988754
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=85.15 E-value=3.9 Score=38.31 Aligned_cols=88 Identities=15% Similarity=0.147 Sum_probs=56.1
Q ss_pred CCEEEEEcCCC--cHHHHHHHHcCCC-eEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccc-ccCCCceeEEEEecc
Q 014247 113 GKVVVDVGCGT--GILSIFCAQAGAK-RVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVED-VEIDEEVDVIISEWM 187 (428)
Q Consensus 113 ~~~VLDiGcGt--G~ls~~la~~g~~-~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~-l~~~~~~DlVvs~~~ 187 (428)
.++|.=||+|. +.++..+++.|.. +|+++|.+ +.++.+. +.|..+ . ...+..+ .- ...|+|+...
T Consensus 33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~----~~G~~~--~-~~~~~~~~~~--~~aDvVilav- 102 (314)
T 3ggo_A 33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAV----DLGIID--E-GTTSIAKVED--FSPDFVMLSS- 102 (314)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHH----HTTSCS--E-EESCTTGGGG--GCCSEEEECS-
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHH----HCCCcc--h-hcCCHHHHhh--ccCCEEEEeC-
Confidence 36899999885 3456666666753 89999999 6665543 334321 1 2234433 21 4689999743
Q ss_pred hhhhcchhhHHHHHHHHhcccccCeEEE
Q 014247 188 GYMLLYESMLGSVITARDRWLKRGGLIL 215 (428)
Q Consensus 188 ~~~l~~~~~~~~~l~~~~~~LkpgG~lv 215 (428)
.......++.++...|++|.+++
T Consensus 103 -----p~~~~~~vl~~l~~~l~~~~iv~ 125 (314)
T 3ggo_A 103 -----PVRTFREIAKKLSYILSEDATVT 125 (314)
T ss_dssp -----CGGGHHHHHHHHHHHSCTTCEEE
T ss_pred -----CHHHHHHHHHHHhhccCCCcEEE
Confidence 12235677888888899987665
|
| >1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52 | Back alignment and structure |
|---|
Probab=85.06 E-value=3.3 Score=40.04 Aligned_cols=69 Identities=16% Similarity=0.183 Sum_probs=43.2
Q ss_pred CCCEEEEEcCCCcHHHHHHHHc--------CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEE
Q 014247 112 EGKVVVDVGCGTGILSIFCAQA--------GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVI 182 (428)
Q Consensus 112 ~~~~VLDiGcGtG~ls~~la~~--------g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlV 182 (428)
....|+|+|.|+|.++.-+.+. ...+++.||+| .+.+.-++.+... ++|.+. .++.+++. ..-+|
T Consensus 80 ~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~~---~~v~W~-~~l~~lp~--~~~~v 153 (387)
T 1zkd_A 80 QTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGI---RNIHWH-DSFEDVPE--GPAVI 153 (387)
T ss_dssp SSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTC---SSEEEE-SSGGGSCC--SSEEE
T ss_pred CCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhcCC---CCeEEe-CChhhcCC--CCeEE
Confidence 3457999999999998776543 12289999999 5555444433222 246654 34555542 24567
Q ss_pred EEec
Q 014247 183 ISEW 186 (428)
Q Consensus 183 vs~~ 186 (428)
+++-
T Consensus 154 iANE 157 (387)
T 1zkd_A 154 LANE 157 (387)
T ss_dssp EEES
T ss_pred Eecc
Confidence 7755
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=84.54 E-value=3.2 Score=38.17 Aligned_cols=70 Identities=19% Similarity=0.287 Sum_probs=51.8
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC-----------
Q 014247 111 IEGKVVVDVGCGTGI---LSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI----------- 175 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~---ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~----------- 175 (428)
++|+++|--|++.|+ .+..+++.|+ +|+.+|.+ +.++.+.+.+ ..++..+.+|+.+...
T Consensus 27 L~gKvalVTGas~GIG~aiA~~la~~Ga-~V~i~~r~~~~l~~~~~~~-----g~~~~~~~~Dv~~~~~v~~~~~~~~~~ 100 (273)
T 4fgs_A 27 LNAKIAVITGATSGIGLAAAKRFVAEGA-RVFITGRRKDVLDAAIAEI-----GGGAVGIQADSANLAELDRLYEKVKAE 100 (273)
T ss_dssp TTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH-----CTTCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred hCCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHc-----CCCeEEEEecCCCHHHHHHHHHHHHHH
Confidence 689999999999885 5677778888 89999999 6665544433 2357788899876421
Q ss_pred CCceeEEEEec
Q 014247 176 DEEVDVIISEW 186 (428)
Q Consensus 176 ~~~~DlVvs~~ 186 (428)
-++.|++|.+.
T Consensus 101 ~G~iDiLVNNA 111 (273)
T 4fgs_A 101 AGRIDVLFVNA 111 (273)
T ss_dssp HSCEEEEEECC
T ss_pred cCCCCEEEECC
Confidence 16899998864
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=84.44 E-value=5 Score=36.34 Aligned_cols=96 Identities=14% Similarity=0.035 Sum_probs=57.1
Q ss_pred CEEEEEcCCCcHHHHHHHHc----CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEEecch
Q 014247 114 KVVVDVGCGTGILSIFCAQA----GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWMG 188 (428)
Q Consensus 114 ~~VLDiGcGtG~ls~~la~~----g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~~~~ 188 (428)
++||-.|+ |.++..+++. |. +|++++.+ ....... . .+++++.+|+.++. -..+|+|+... +
T Consensus 6 ~~ilVtGa--G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~----~----~~~~~~~~D~~d~~-~~~~d~vi~~a-~ 72 (286)
T 3ius_A 6 GTLLSFGH--GYTARVLSRALAPQGW-RIIGTSRNPDQMEAIR----A----SGAEPLLWPGEEPS-LDGVTHLLIST-A 72 (286)
T ss_dssp CEEEEETC--CHHHHHHHHHHGGGTC-EEEEEESCGGGHHHHH----H----TTEEEEESSSSCCC-CTTCCEEEECC-C
T ss_pred CcEEEECC--cHHHHHHHHHHHHCCC-EEEEEEcChhhhhhHh----h----CCCeEEEecccccc-cCCCCEEEECC-C
Confidence 68999995 8777766653 66 89999988 4332221 1 24899999999876 57799999743 1
Q ss_pred hhhcchhhHHHHHHHHhccccc-CeEEEccCCeee
Q 014247 189 YMLLYESMLGSVITARDRWLKR-GGLILPSYATLY 222 (428)
Q Consensus 189 ~~l~~~~~~~~~l~~~~~~Lkp-gG~lv~~~~~~~ 222 (428)
...........+++.+.+.-.. .-.+++++...|
T Consensus 73 ~~~~~~~~~~~l~~a~~~~~~~~~~~v~~Ss~~vy 107 (286)
T 3ius_A 73 PDSGGDPVLAALGDQIAARAAQFRWVGYLSTTAVY 107 (286)
T ss_dssp CBTTBCHHHHHHHHHHHHTGGGCSEEEEEEEGGGG
T ss_pred ccccccHHHHHHHHHHHhhcCCceEEEEeecceec
Confidence 1111222234455555442112 234445544443
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=84.43 E-value=0.66 Score=44.64 Aligned_cols=97 Identities=20% Similarity=0.209 Sum_probs=51.5
Q ss_pred CCCCEEEEEcCCC-cHHHHHHH-HcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC-CCceeEEEEec
Q 014247 111 IEGKVVVDVGCGT-GILSIFCA-QAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI-DEEVDVIISEW 186 (428)
Q Consensus 111 ~~~~~VLDiGcGt-G~ls~~la-~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~-~~~~DlVvs~~ 186 (428)
.++++||-+|+|. |..+..++ ..|+ +|+++|.+ +-++.+++.... .+..+..+..++.. -..+|+|+...
T Consensus 165 l~~~~VlViGaGgvG~~aa~~a~~~Ga-~V~v~dr~~~r~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~DvVI~~~ 238 (361)
T 1pjc_A 165 VKPGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDINVERLSYLETLFGS-----RVELLYSNSAEIETAVAEADLLIGAV 238 (361)
T ss_dssp BCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGG-----GSEEEECCHHHHHHHHHTCSEEEECC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHhhCc-----eeEeeeCCHHHHHHHHcCCCEEEECC
Confidence 3458999999963 33333333 3488 89999999 666665544322 13233222222111 13689998743
Q ss_pred chhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 187 MGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 187 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
. ......+.-+.+...+.|+|||+++-
T Consensus 239 ~---~~~~~~~~li~~~~~~~~~~g~~ivd 265 (361)
T 1pjc_A 239 L---VPGRRAPILVPASLVEQMRTGSVIVD 265 (361)
T ss_dssp C---CTTSSCCCCBCHHHHTTSCTTCEEEE
T ss_pred C---cCCCCCCeecCHHHHhhCCCCCEEEE
Confidence 1 11100000012334567899998774
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=84.29 E-value=3.1 Score=38.95 Aligned_cols=75 Identities=19% Similarity=0.179 Sum_probs=54.7
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC-----------
Q 014247 111 IEGKVVVDVGCGTGI---LSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI----------- 175 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~---ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~----------- 175 (428)
..+++||-.|++.|+ ++..+++.|+ +|++++.+ +-++.+.+.+...+...++.++.+|+.+...
T Consensus 6 l~~k~vlVTGas~gIG~~la~~l~~~G~-~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 84 (319)
T 3ioy_A 6 FAGRTAFVTGGANGVGIGLVRQLLNQGC-KVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEAR 84 (319)
T ss_dssp CTTCEEEEETTTSTHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEcCCchHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHh
Confidence 467899999998875 5566667788 89999999 7666666655554443469999999877421
Q ss_pred CCceeEEEEec
Q 014247 176 DEEVDVIISEW 186 (428)
Q Consensus 176 ~~~~DlVvs~~ 186 (428)
-+.+|++|.+.
T Consensus 85 ~g~id~lv~nA 95 (319)
T 3ioy_A 85 FGPVSILCNNA 95 (319)
T ss_dssp TCCEEEEEECC
T ss_pred CCCCCEEEECC
Confidence 14789999864
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=84.29 E-value=6.6 Score=38.92 Aligned_cols=97 Identities=19% Similarity=0.232 Sum_probs=60.4
Q ss_pred CCEEEEEcCCC-c-HHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHC-------C------C-CCcEEEEEcccccccC
Q 014247 113 GKVVVDVGCGT-G-ILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKAN-------N------L-TDKVIVLHGRVEDVEI 175 (428)
Q Consensus 113 ~~~VLDiGcGt-G-~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~-------~------~-~~~v~~~~~d~~~l~~ 175 (428)
-.+|.-||+|. | .++..++++|. .|+.+|.+ +.++.+++.+..+ + . .....+ ..|...+
T Consensus 37 ~~kV~VIGaG~MG~~iA~~la~~G~-~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i-~~~~~~~-- 112 (463)
T 1zcj_A 37 VSSVGVLGLGTMGRGIAISFARVGI-SVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF-SSSTKEL-- 112 (463)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEE-ESCGGGG--
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhh-cCCHHHH--
Confidence 35799999997 3 45666777777 89999999 7777665533210 1 0 111222 3444322
Q ss_pred CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccC
Q 014247 176 DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 176 ~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
...|+|+... .........++.++...++|+.+++-++
T Consensus 113 -~~aDlVIeaV----pe~~~~k~~v~~~l~~~~~~~~ii~snT 150 (463)
T 1zcj_A 113 -STVDLVVEAV----FEDMNLKKKVFAELSALCKPGAFLCTNT 150 (463)
T ss_dssp -TTCSEEEECC----CSCHHHHHHHHHHHHHHSCTTCEEEECC
T ss_pred -CCCCEEEEcC----CCCHHHHHHHHHHHHhhCCCCeEEEeCC
Confidence 5689999743 1222224677788888899988777543
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=84.27 E-value=6 Score=36.12 Aligned_cols=74 Identities=15% Similarity=0.174 Sum_probs=52.3
Q ss_pred CCCCCEEEEEcCCCcH---HHHHHHHcCCCeEEEEeC-h-HHHHHHHHHHHHCCCCCcEEEEEcccccccC---------
Q 014247 110 FIEGKVVVDVGCGTGI---LSIFCAQAGAKRVYAVDA-S-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI--------- 175 (428)
Q Consensus 110 ~~~~~~VLDiGcGtG~---ls~~la~~g~~~V~giD~-s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~--------- 175 (428)
...+++||-.|++.|+ ++..+++.|+ +|+.++. + +.++...+.+...+ .++.++.+|+.+...
T Consensus 26 ~~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~ 102 (280)
T 4da9_A 26 QKARPVAIVTGGRRGIGLGIARALAASGF-DIAITGIGDAEGVAPVIAELSGLG--ARVIFLRADLADLSSHQATVDAVV 102 (280)
T ss_dssp CCCCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCCHHHHHHHHHHHHHTT--CCEEEEECCTTSGGGHHHHHHHHH
T ss_pred ccCCCEEEEecCCCHHHHHHHHHHHHCCC-eEEEEeCCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHH
Confidence 4578899999988874 5666777788 8999986 4 55555445454443 358999999887532
Q ss_pred --CCceeEEEEec
Q 014247 176 --DEEVDVIISEW 186 (428)
Q Consensus 176 --~~~~DlVvs~~ 186 (428)
-++.|++|.+.
T Consensus 103 ~~~g~iD~lvnnA 115 (280)
T 4da9_A 103 AEFGRIDCLVNNA 115 (280)
T ss_dssp HHHSCCCEEEEEC
T ss_pred HHcCCCCEEEECC
Confidence 04789999864
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=84.14 E-value=0.87 Score=43.73 Aligned_cols=93 Identities=22% Similarity=0.193 Sum_probs=53.4
Q ss_pred CCC-CCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEc-ccccc-cCCCceeEE
Q 014247 109 SFI-EGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHG-RVEDV-EIDEEVDVI 182 (428)
Q Consensus 109 ~~~-~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~-d~~~l-~~~~~~DlV 182 (428)
... ++.+||-+|+|. |.++..+|+. |+ +|++++.+ +-.+.+++ ..|.. .++.. +...+ ...+.+|+|
T Consensus 183 ~~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~---~lGa~---~v~~~~~~~~~~~~~~~~D~v 255 (366)
T 1yqd_A 183 GLDEPGKHIGIVGLGGLGHVAVKFAKAFGS-KVTVISTSPSKKEEALK---NFGAD---SFLVSRDQEQMQAAAGTLDGI 255 (366)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCGGGHHHHHH---TSCCS---EEEETTCHHHHHHTTTCEEEE
T ss_pred CcCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH---hcCCc---eEEeccCHHHHHHhhCCCCEE
Confidence 445 899999999863 5566666665 77 89999988 55544432 23321 22221 11111 111479999
Q ss_pred EEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 183 ISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 183 vs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
+... + ... .++...+.|+++|+++.-
T Consensus 256 id~~-g----~~~----~~~~~~~~l~~~G~iv~~ 281 (366)
T 1yqd_A 256 IDTV-S----AVH----PLLPLFGLLKSHGKLILV 281 (366)
T ss_dssp EECC-S----SCC----CSHHHHHHEEEEEEEEEC
T ss_pred EECC-C----cHH----HHHHHHHHHhcCCEEEEE
Confidence 9743 1 111 123445678999988753
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=84.04 E-value=4 Score=36.62 Aligned_cols=72 Identities=14% Similarity=0.095 Sum_probs=48.0
Q ss_pred CCCEEEEEcCCCcH---HHHHHHH-cCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC-----------
Q 014247 112 EGKVVVDVGCGTGI---LSIFCAQ-AGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI----------- 175 (428)
Q Consensus 112 ~~~~VLDiGcGtG~---ls~~la~-~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~----------- 175 (428)
++++||-.|++.|+ ++..+++ .|+ +|++++.+ .....+.+.+...+ .++.++.+|+.+...
T Consensus 3 ~~k~vlITGasggIG~~~a~~L~~~~g~-~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~ 79 (276)
T 1wma_A 3 GIHVALVTGGNKGIGLAIVRDLCRLFSG-DVVLTARDVTRGQAAVQQLQAEG--LSPRFHQLDIDDLQSIRALRDFLRKE 79 (276)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSS-EEEEEESSHHHHHHHHHHHHHTT--CCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHhcCC-eEEEEeCChHHHHHHHHHHHhcC--CeeEEEECCCCCHHHHHHHHHHHHHh
Confidence 46788888866543 3445566 677 89999988 65555555555443 358899999876421
Q ss_pred CCceeEEEEec
Q 014247 176 DEEVDVIISEW 186 (428)
Q Consensus 176 ~~~~DlVvs~~ 186 (428)
-+++|+||.+.
T Consensus 80 ~g~id~li~~A 90 (276)
T 1wma_A 80 YGGLDVLVNNA 90 (276)
T ss_dssp HSSEEEEEECC
T ss_pred cCCCCEEEECC
Confidence 03799998754
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=83.67 E-value=0.5 Score=44.56 Aligned_cols=93 Identities=13% Similarity=0.120 Sum_probs=54.1
Q ss_pred CCCCCC-EEEEEcC--CCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcc---cccccCCCcee
Q 014247 109 SFIEGK-VVVDVGC--GTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGR---VEDVEIDEEVD 180 (428)
Q Consensus 109 ~~~~~~-~VLDiGc--GtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d---~~~l~~~~~~D 180 (428)
...++. +||-+|+ |.|.++..+++. |+ +|++++.+ +-++.+++ .|...-+.....+ +..+. ...+|
T Consensus 145 ~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga-~vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~~~~~~-~~~~d 218 (328)
T 1xa0_A 145 GLTPERGPVLVTGATGGVGSLAVSMLAKRGY-TVEASTGKAAEHDYLRV----LGAKEVLAREDVMAERIRPLD-KQRWA 218 (328)
T ss_dssp TCCGGGCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCTTCHHHHHH----TTCSEEEECC---------CC-SCCEE
T ss_pred CCCCCCceEEEecCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH----cCCcEEEecCCcHHHHHHHhc-CCccc
Confidence 445665 8999997 456777777775 77 79999988 65555543 3332111111110 01111 24799
Q ss_pred EEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 181 VIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 181 lVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
+|+-.. + . . .+....+.|+++|+++..
T Consensus 219 ~vid~~-g----~-~----~~~~~~~~l~~~G~~v~~ 245 (328)
T 1xa0_A 219 AAVDPV-G----G-R----TLATVLSRMRYGGAVAVS 245 (328)
T ss_dssp EEEECS-T----T-T----THHHHHHTEEEEEEEEEC
T ss_pred EEEECC-c----H-H----HHHHHHHhhccCCEEEEE
Confidence 998643 1 1 1 244556789999998754
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=83.64 E-value=3.2 Score=39.07 Aligned_cols=102 Identities=19% Similarity=0.154 Sum_probs=67.8
Q ss_pred CCEEEEEcCCC-c-HHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHC-------C-CCC---------cEEEEEccccc
Q 014247 113 GKVVVDVGCGT-G-ILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKAN-------N-LTD---------KVIVLHGRVED 172 (428)
Q Consensus 113 ~~~VLDiGcGt-G-~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~-------~-~~~---------~v~~~~~d~~~ 172 (428)
..+|.-||+|+ | .++..+|.+|. .|+..|++ +.++.+.+.++.. + +.. ++++. .|+.+
T Consensus 6 ~~~VaViGaG~MG~giA~~~a~~G~-~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~-~~l~~ 83 (319)
T 3ado_A 6 AGDVLIVGSGLVGRSWAMLFASGGF-RVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSC-TNLAE 83 (319)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTC-CEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEE-CCHHH
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccc-cchHh
Confidence 46899999997 2 36777788888 89999999 8877776655432 1 111 13322 23222
Q ss_pred ccCCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeee
Q 014247 173 VEIDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLY 222 (428)
Q Consensus 173 l~~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 222 (428)
. -...|+|+=. +......-.++++++..+++|+.+|.-++.++.
T Consensus 84 a--~~~ad~ViEa----v~E~l~iK~~lf~~l~~~~~~~aIlaSNTSsl~ 127 (319)
T 3ado_A 84 A--VEGVVHIQEC----VPENLDLKRKIFAQLDSIVDDRVVLSSSSSCLL 127 (319)
T ss_dssp H--TTTEEEEEEC----CCSCHHHHHHHHHHHHTTCCSSSEEEECCSSCC
T ss_pred H--hccCcEEeec----cccHHHHHHHHHHHHHHHhhhcceeehhhhhcc
Confidence 1 1467888742 455566678899999999999998876665543
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.61 E-value=0.97 Score=43.52 Aligned_cols=92 Identities=20% Similarity=0.142 Sum_probs=54.1
Q ss_pred CCCCCEEEEEcC-C-CcHHHHHHHHc-CCCeEEEEeChHHHHHHHHHHHHCCCCCcEEEEEccccc----ccCCCceeEE
Q 014247 110 FIEGKVVVDVGC-G-TGILSIFCAQA-GAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVED----VEIDEEVDVI 182 (428)
Q Consensus 110 ~~~~~~VLDiGc-G-tG~ls~~la~~-g~~~V~giD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~----l~~~~~~DlV 182 (428)
..+|++||-.|+ | .|.++..+|+. |+ +|++++..+-.+.+ ++.|.. .++..+-.+ +.....+|+|
T Consensus 181 ~~~g~~VlV~Ga~G~vG~~~~qla~~~Ga-~Vi~~~~~~~~~~~----~~lGa~---~v~~~~~~~~~~~~~~~~g~D~v 252 (375)
T 2vn8_A 181 NCTGKRVLILGASGGVGTFAIQVMKAWDA-HVTAVCSQDASELV----RKLGAD---DVIDYKSGSVEEQLKSLKPFDFI 252 (375)
T ss_dssp TCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECGGGHHHH----HHTTCS---EEEETTSSCHHHHHHTSCCBSEE
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHhCCC-EEEEEeChHHHHHH----HHcCCC---EEEECCchHHHHHHhhcCCCCEE
Confidence 578999999993 4 46777777765 77 89999843444444 333432 222211111 1111469999
Q ss_pred EEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 183 ISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 183 vs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
+-.. + . ....+....+.|+++|+++..
T Consensus 253 id~~-g----~---~~~~~~~~~~~l~~~G~iv~~ 279 (375)
T 2vn8_A 253 LDNV-G----G---STETWAPDFLKKWSGATYVTL 279 (375)
T ss_dssp EESS-C----T---THHHHGGGGBCSSSCCEEEES
T ss_pred EECC-C----C---hhhhhHHHHHhhcCCcEEEEe
Confidence 8643 1 1 112345567889999998753
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=83.28 E-value=6.1 Score=35.81 Aligned_cols=73 Identities=22% Similarity=0.235 Sum_probs=49.0
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCeEEEEe-Ch-HHHHHHHHHHHHCCCCCcEEEEEcccccccC----------
Q 014247 111 IEGKVVVDVGCGTGI---LSIFCAQAGAKRVYAVD-AS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI---------- 175 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~---ls~~la~~g~~~V~giD-~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~---------- 175 (428)
..++++|-.|++.|+ ++..+++.|+ +|+.++ .+ ...+...+.+...+ .++.++.+|+.+...
T Consensus 25 ~~~k~~lVTGas~GIG~aia~~la~~G~-~Vv~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~ 101 (267)
T 3u5t_A 25 ETNKVAIVTGASRGIGAAIAARLASDGF-TVVINYAGKAAAAEEVAGKIEAAG--GKALTAQADVSDPAAVRRLFATAEE 101 (267)
T ss_dssp --CCEEEEESCSSHHHHHHHHHHHHHTC-EEEEEESSCSHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 467899999998875 5666777788 777764 34 55555555555443 358899999876421
Q ss_pred -CCceeEEEEec
Q 014247 176 -DEEVDVIISEW 186 (428)
Q Consensus 176 -~~~~DlVvs~~ 186 (428)
-++.|++|.+.
T Consensus 102 ~~g~iD~lvnnA 113 (267)
T 3u5t_A 102 AFGGVDVLVNNA 113 (267)
T ss_dssp HHSCEEEEEECC
T ss_pred HcCCCCEEEECC
Confidence 14799999864
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=83.20 E-value=0.72 Score=43.48 Aligned_cols=91 Identities=16% Similarity=0.184 Sum_probs=55.4
Q ss_pred CCCCCC-EEEEEcC--CCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEc-cc-cc-cc--CCCc
Q 014247 109 SFIEGK-VVVDVGC--GTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHG-RV-ED-VE--IDEE 178 (428)
Q Consensus 109 ~~~~~~-~VLDiGc--GtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~-d~-~~-l~--~~~~ 178 (428)
...++. +||-+|+ |.|.++..+++. |+ +|++++.+ +-++.+++ .|.. .++.. +. .+ +. ....
T Consensus 146 ~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga-~vi~~~~~~~~~~~~~~----lGa~---~v~~~~~~~~~~~~~~~~~~ 217 (330)
T 1tt7_A 146 GLSPEKGSVLVTGATGGVGGIAVSMLNKRGY-DVVASTGNREAADYLKQ----LGAS---EVISREDVYDGTLKALSKQQ 217 (330)
T ss_dssp TCCGGGCCEEEESTTSHHHHHHHHHHHHHTC-CEEEEESSSSTHHHHHH----HTCS---EEEEHHHHCSSCCCSSCCCC
T ss_pred CcCCCCceEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----cCCc---EEEECCCchHHHHHHhhcCC
Confidence 345665 8999997 356677777765 87 69999988 66665544 2322 12221 11 01 11 1246
Q ss_pred eeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 179 VDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 179 ~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
+|+|+-.. + . ..+....+.|+++|+++..
T Consensus 218 ~d~vid~~-g----~-----~~~~~~~~~l~~~G~iv~~ 246 (330)
T 1tt7_A 218 WQGAVDPV-G----G-----KQLASLLSKIQYGGSVAVS 246 (330)
T ss_dssp EEEEEESC-C----T-----HHHHHHHTTEEEEEEEEEC
T ss_pred ccEEEECC-c----H-----HHHHHHHHhhcCCCEEEEE
Confidence 99998643 1 1 1356667889999998754
|
| >3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=83.17 E-value=4.4 Score=37.27 Aligned_cols=76 Identities=14% Similarity=0.215 Sum_probs=52.5
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCC--CeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC---------
Q 014247 111 IEGKVVVDVGCGTGI---LSIFCAQAGA--KRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI--------- 175 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~---ls~~la~~g~--~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~--------- 175 (428)
..+++||-.|++.|+ ++..+++.|+ .+|+.++.+ +.++.+.+.+.......++.++.+|+.+...
T Consensus 31 l~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 110 (287)
T 3rku_A 31 LAKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIENLP 110 (287)
T ss_dssp HTTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHTSC
T ss_pred cCCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 357899999988764 3445555565 389999998 7666665555543333468999999877531
Q ss_pred --CCceeEEEEec
Q 014247 176 --DEEVDVIISEW 186 (428)
Q Consensus 176 --~~~~DlVvs~~ 186 (428)
-++.|++|.+.
T Consensus 111 ~~~g~iD~lVnnA 123 (287)
T 3rku_A 111 QEFKDIDILVNNA 123 (287)
T ss_dssp GGGCSCCEEEECC
T ss_pred HhcCCCCEEEECC
Confidence 14789999864
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=83.03 E-value=4.7 Score=36.63 Aligned_cols=75 Identities=16% Similarity=0.198 Sum_probs=52.1
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC-----------
Q 014247 111 IEGKVVVDVGCGTGI---LSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI----------- 175 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~---ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~----------- 175 (428)
..+++||-.|++.|+ ++..+++.|+ +|++++.+ ..++...+.+...+...++.++.+|+.+...
T Consensus 30 l~~k~vlVTGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 108 (279)
T 1xg5_A 30 WRDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQ 108 (279)
T ss_dssp GTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHh
Confidence 357899999987653 4455566677 89999998 6665555555555554568899999876421
Q ss_pred CCceeEEEEec
Q 014247 176 DEEVDVIISEW 186 (428)
Q Consensus 176 ~~~~DlVvs~~ 186 (428)
-+.+|+||.+.
T Consensus 109 ~g~iD~vi~~A 119 (279)
T 1xg5_A 109 HSGVDICINNA 119 (279)
T ss_dssp HCCCSEEEECC
T ss_pred CCCCCEEEECC
Confidence 03789998754
|
| >4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A* | Back alignment and structure |
|---|
Probab=82.81 E-value=2.9 Score=41.08 Aligned_cols=68 Identities=26% Similarity=0.377 Sum_probs=43.8
Q ss_pred CCEEEEEcCCCcHHHHHHHHc----C--CCeEEEEeCh-HHHHHHHHHHHHC--CCCCcEEEEEcccccccCCCcee-EE
Q 014247 113 GKVVVDVGCGTGILSIFCAQA----G--AKRVYAVDAS-DIAVQANEVVKAN--NLTDKVIVLHGRVEDVEIDEEVD-VI 182 (428)
Q Consensus 113 ~~~VLDiGcGtG~ls~~la~~----g--~~~V~giD~s-~~~~~a~~~~~~~--~~~~~v~~~~~d~~~l~~~~~~D-lV 182 (428)
...|+|+|.|+|.++.-+.+. + ..+++.||+| .+.+.-++.+... .+..+|.+.. ++ ++.+. +|
T Consensus 138 ~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~~~~~~~~~v~W~~----~l--P~~~~g~i 211 (432)
T 4f3n_A 138 TRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLGAQAPGLAARVRWLD----AL--PERFEGVV 211 (432)
T ss_dssp CCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHHHHSTTTGGGEEEES----SC--CSCEEEEE
T ss_pred CCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHhccccccCCCceecc----cC--CccCceEE
Confidence 469999999999987766543 2 3489999999 7766666665532 1233566643 13 24444 56
Q ss_pred EEec
Q 014247 183 ISEW 186 (428)
Q Consensus 183 vs~~ 186 (428)
+++-
T Consensus 212 iANE 215 (432)
T 4f3n_A 212 VGNE 215 (432)
T ss_dssp EEES
T ss_pred Eeeh
Confidence 6554
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=82.78 E-value=3.3 Score=40.04 Aligned_cols=103 Identities=17% Similarity=0.137 Sum_probs=65.0
Q ss_pred HHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeChHHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeE
Q 014247 102 AAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDV 181 (428)
Q Consensus 102 ~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~Dl 181 (428)
+.+.+.+.. .+.+||.++-+-|.++..++.. .+|+.+.-|.....| ++.+++.. .. ..... ..+..||+
T Consensus 36 ~~l~~~~~~-~~~~~l~~n~~~g~~~~~~~~~--~~~~~~~~~~~~~~~---l~~~~~~~--~~-~~~~~--~~~~~~d~ 104 (381)
T 3dmg_A 36 DLLQKTVEP-FGERALDLNPGVGWGSLPLEGR--MAVERLETSRAAFRC---LTASGLQA--RL-ALPWE--AAAGAYDL 104 (381)
T ss_dssp HHHHTTCCC-CSSEEEESSCTTSTTTGGGBTT--BEEEEEECBHHHHHH---HHHTTCCC--EE-CCGGG--SCTTCEEE
T ss_pred HHHHHHHHH-hCCcEEEecCCCCccccccCCC--CceEEEeCcHHHHHH---HHHcCCCc--cc-cCCcc--CCcCCCCE
Confidence 344555543 3468999999999887766422 378888777333333 66678754 22 11111 23478999
Q ss_pred EEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 182 IISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 182 Vvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
|+.-+.-. -........|..+.+.|+|||.+++.
T Consensus 105 v~~~~Pk~--k~~~~~~~~l~~~~~~l~~g~~i~~~ 138 (381)
T 3dmg_A 105 VVLALPAG--RGTAYVQASLVAAARALRMGGRLYLA 138 (381)
T ss_dssp EEEECCGG--GCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEECCcc--hhHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 99743110 01234677888889999999998754
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=82.71 E-value=6.1 Score=35.62 Aligned_cols=73 Identities=23% Similarity=0.336 Sum_probs=54.4
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC-----------
Q 014247 111 IEGKVVVDVGCGTGI---LSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI----------- 175 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~---ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~----------- 175 (428)
..+++||-.|++.|+ ++..+++.|+ +|+.++.+ +.++.+.+.+...+ .++.++.+|+.+...
T Consensus 9 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~ 85 (264)
T 3ucx_A 9 LTDKVVVISGVGPALGTTLARRCAEQGA-DLVLAARTVERLEDVAKQVTDTG--RRALSVGTDITDDAQVAHLVDETMKA 85 (264)
T ss_dssp TTTCEEEEESCCTTHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 578899999998875 5666777788 89999999 76666666555543 458999999877421
Q ss_pred CCceeEEEEec
Q 014247 176 DEEVDVIISEW 186 (428)
Q Consensus 176 ~~~~DlVvs~~ 186 (428)
-++.|++|.+.
T Consensus 86 ~g~id~lv~nA 96 (264)
T 3ucx_A 86 YGRVDVVINNA 96 (264)
T ss_dssp TSCCSEEEECC
T ss_pred cCCCcEEEECC
Confidence 15789999864
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=82.62 E-value=17 Score=37.91 Aligned_cols=118 Identities=19% Similarity=0.197 Sum_probs=70.9
Q ss_pred hHHHHHHHHHhccCCC---CCCEEEEEcCCCcHHHHHHHHc-C------CC--eEEEEeChHHHHHHHHHHHHCC-----
Q 014247 96 RTETYRAAIMQNQSFI---EGKVVVDVGCGTGILSIFCAQA-G------AK--RVYAVDASDIAVQANEVVKANN----- 158 (428)
Q Consensus 96 r~~~~~~~i~~~~~~~---~~~~VLDiGcGtG~ls~~la~~-g------~~--~V~giD~s~~~~~a~~~~~~~~----- 158 (428)
|...+.+.+.+.+... +...|+-+|||.=.....+... . .. +++=||..+.++.-++.+....
T Consensus 88 R~~~~d~~v~~fl~~~~~~~~~qvV~LGaGlDtr~~Rl~~~~~~~~~~~~~~~~~~EvD~p~v~~~K~~~l~~~~~l~~~ 167 (695)
T 2zwa_A 88 RLFAIRSRLNSIIEQTPQDKKIVVVNLGCGYDPLPFQLLDTNNIQSQQYHDRVSFIDIDYSDLLKIKIELIKTIPELSKI 167 (695)
T ss_dssp HHHHHHHHHHHHHHHSCTTSEEEEEEETCTTCCHHHHHHCTTCGGGGGGSSSEEEEEEECHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCCCcEEEEcccccCcceeeeeccCcccccccCCCCEEEECccHHHHHHHHHHHHcChHHHHh
Confidence 4444444554444322 4568999999998888877654 1 12 4455555555554444444221
Q ss_pred C------------------CCcEEEEEccccccc------------CCCceeEEEEecchhhhcchhhHHHHHHHHhccc
Q 014247 159 L------------------TDKVIVLHGRVEDVE------------IDEEVDVIISEWMGYMLLYESMLGSVITARDRWL 208 (428)
Q Consensus 159 ~------------------~~~v~~~~~d~~~l~------------~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~L 208 (428)
+ .++..++.+|+++.. .+...-+++++.+..++ .......+++.+.++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~s~~y~~v~~Dl~~~~~~~~~l~~~g~~d~~~ptl~i~Egvl~Yl-~~~~~~~ll~~~~~~- 245 (695)
T 2zwa_A 168 IGLSEDKDYVDDSNVDFLTTPKYLARPCDLNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAYM-KPERSDSIIEATSKM- 245 (695)
T ss_dssp TTCCSSCSSCSCTTCCCEECSSEEEEECCTTCHHHHHHHHHHTTTTCTTEEEEEEEESSGGGS-CHHHHHHHHHHHHTS-
T ss_pred hccccccccccccccccccCCCeeEEeCcCCCcHHHHHHHhhccCCCCCCCEEEeeeeEEEEc-CHHHHHHHHHHHhhC-
Confidence 0 136899999988741 12455688888865444 344588888888864
Q ss_pred ccCeEEEc
Q 014247 209 KRGGLILP 216 (428)
Q Consensus 209 kpgG~lv~ 216 (428)
++|.++.
T Consensus 246 -~~~~~~~ 252 (695)
T 2zwa_A 246 -ENSHFII 252 (695)
T ss_dssp -SSEEEEE
T ss_pred -CCceEEE
Confidence 5666553
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=82.32 E-value=5.3 Score=36.06 Aligned_cols=75 Identities=16% Similarity=0.120 Sum_probs=52.7
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC-----------
Q 014247 111 IEGKVVVDVGCGTGI---LSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI----------- 175 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~---ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~----------- 175 (428)
..+++||-.|++.|+ ++..+++.|+ +|+.++.+ +-++.+.+.+....-..++.++.+|+.+...
T Consensus 6 l~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 84 (265)
T 3lf2_A 6 LSEAVAVVTGGSSGIGLATVELLLEAGA-AVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACERT 84 (265)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 567899999998874 5666777788 79999998 6666655555442122348899999876421
Q ss_pred CCceeEEEEec
Q 014247 176 DEEVDVIISEW 186 (428)
Q Consensus 176 ~~~~DlVvs~~ 186 (428)
-++.|++|.+.
T Consensus 85 ~g~id~lvnnA 95 (265)
T 3lf2_A 85 LGCASILVNNA 95 (265)
T ss_dssp HCSCSEEEECC
T ss_pred cCCCCEEEECC
Confidence 14789999864
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=82.15 E-value=4.3 Score=37.49 Aligned_cols=86 Identities=15% Similarity=0.219 Sum_probs=50.1
Q ss_pred HHHHHHHHhccCCCCCCEEEEEcCCCcH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccc
Q 014247 98 ETYRAAIMQNQSFIEGKVVVDVGCGTGI---LSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDV 173 (428)
Q Consensus 98 ~~~~~~i~~~~~~~~~~~VLDiGcGtG~---ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l 173 (428)
..+...+.+......+++||-+|+| |. .+..+++.|+++|+.++.+ +-++...+.+......-.+... +..++
T Consensus 112 ~G~~~~l~~~~~~l~~k~vlVlGaG-G~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~--~~~~l 188 (283)
T 3jyo_A 112 SGFGRGMEEGLPNAKLDSVVQVGAG-GVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGV--DARGI 188 (283)
T ss_dssp HHHHHHHHHHCTTCCCSEEEEECCS-HHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEE--CSTTH
T ss_pred HHHHHHHHHhCcCcCCCEEEEECCc-HHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEc--CHHHH
Confidence 3455666555445678999999997 32 3445566688889999998 6555443433332111123322 22222
Q ss_pred cC-CCceeEEEEec
Q 014247 174 EI-DEEVDVIISEW 186 (428)
Q Consensus 174 ~~-~~~~DlVvs~~ 186 (428)
.. -..+|+||...
T Consensus 189 ~~~l~~~DiVInaT 202 (283)
T 3jyo_A 189 EDVIAAADGVVNAT 202 (283)
T ss_dssp HHHHHHSSEEEECS
T ss_pred HHHHhcCCEEEECC
Confidence 11 14689999854
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=81.94 E-value=11 Score=34.66 Aligned_cols=81 Identities=21% Similarity=0.290 Sum_probs=49.3
Q ss_pred HHHHHHHHhccCCCCCCEEEEEcCCCcH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccc
Q 014247 98 ETYRAAIMQNQSFIEGKVVVDVGCGTGI---LSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDV 173 (428)
Q Consensus 98 ~~~~~~i~~~~~~~~~~~VLDiGcGtG~---ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l 173 (428)
..+.+.+........+++||-+|+| |. .+..+++.|+++|+.++.+ +-++...+.+...+ .+... +..++
T Consensus 111 ~G~~~~L~~~~~~l~~k~vlvlGaG-g~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~---~~~~~--~~~~l 184 (281)
T 3o8q_A 111 EGLVQDLLAQQVLLKGATILLIGAG-GAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYG---EVKAQ--AFEQL 184 (281)
T ss_dssp HHHHHHHHHTTCCCTTCEEEEECCS-HHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGS---CEEEE--EGGGC
T ss_pred HHHHHHHHHhCCCccCCEEEEECch-HHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccC---CeeEe--eHHHh
Confidence 3455556554334578999999997 32 3344555687799999988 55444333333221 24444 34444
Q ss_pred cCCCceeEEEEec
Q 014247 174 EIDEEVDVIISEW 186 (428)
Q Consensus 174 ~~~~~~DlVvs~~ 186 (428)
. ..+|+||+..
T Consensus 185 ~--~~aDiIInaT 195 (281)
T 3o8q_A 185 K--QSYDVIINST 195 (281)
T ss_dssp C--SCEEEEEECS
T ss_pred c--CCCCEEEEcC
Confidence 3 6799999854
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=81.88 E-value=4.6 Score=36.36 Aligned_cols=75 Identities=19% Similarity=0.232 Sum_probs=53.3
Q ss_pred CCCCCCEEEEEcCCCcH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC---------
Q 014247 109 SFIEGKVVVDVGCGTGI---LSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI--------- 175 (428)
Q Consensus 109 ~~~~~~~VLDiGcGtG~---ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~--------- 175 (428)
....+++||-.|++.|+ ++..+++.|+ +|+.++.+ +.++.+.+.+...+ .++.++.+|+.+...
T Consensus 25 ~~l~~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~ 101 (262)
T 3rkr_A 25 SSLSGQVAVVTGASRGIGAAIARKLGSLGA-RVVLTARDVEKLRAVEREIVAAG--GEAESHACDLSHSDAIAAFATGVL 101 (262)
T ss_dssp CTTTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHH
T ss_pred hccCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhC--CceeEEEecCCCHHHHHHHHHHHH
Confidence 34678899999987763 4555666787 79999999 66666666555543 468999999876421
Q ss_pred --CCceeEEEEec
Q 014247 176 --DEEVDVIISEW 186 (428)
Q Consensus 176 --~~~~DlVvs~~ 186 (428)
-++.|+||.+.
T Consensus 102 ~~~g~id~lv~~A 114 (262)
T 3rkr_A 102 AAHGRCDVLVNNA 114 (262)
T ss_dssp HHHSCCSEEEECC
T ss_pred HhcCCCCEEEECC
Confidence 14689999864
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=81.87 E-value=4.5 Score=36.23 Aligned_cols=75 Identities=20% Similarity=0.244 Sum_probs=52.8
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCC-CCCcEEEEEcccccccC----------
Q 014247 111 IEGKVVVDVGCGTGI---LSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANN-LTDKVIVLHGRVEDVEI---------- 175 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~---ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~-~~~~v~~~~~d~~~l~~---------- 175 (428)
..++++|-.|++.|+ ++..+++.|+ +|+.++.+ +.++.+.+.+.... -..++.++.+|+.+...
T Consensus 5 ~~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 83 (250)
T 3nyw_A 5 KQKGLAIITGASQGIGAVIAAGLATDGY-RVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQ 83 (250)
T ss_dssp CCCCEEEEESTTSHHHHHHHHHHHHHTC-EEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHH
Confidence 467899999998874 5566677788 89999998 66666555544432 21458899999877421
Q ss_pred -CCceeEEEEec
Q 014247 176 -DEEVDVIISEW 186 (428)
Q Consensus 176 -~~~~DlVvs~~ 186 (428)
-++.|++|.+.
T Consensus 84 ~~g~iD~lvnnA 95 (250)
T 3nyw_A 84 KYGAVDILVNAA 95 (250)
T ss_dssp HHCCEEEEEECC
T ss_pred hcCCCCEEEECC
Confidence 14799999864
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=81.86 E-value=4.7 Score=36.25 Aligned_cols=74 Identities=23% Similarity=0.265 Sum_probs=53.2
Q ss_pred CCCCEEEEEcC-CCcH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC----------
Q 014247 111 IEGKVVVDVGC-GTGI---LSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI---------- 175 (428)
Q Consensus 111 ~~~~~VLDiGc-GtG~---ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~---------- 175 (428)
..+++||-.|+ |.|+ ++..+++.|+ +|+.++.+ +-+..+.+.+...+ ..++.++.+|+.+...
T Consensus 20 l~~k~vlITGasg~GIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~~~ 97 (266)
T 3o38_A 20 LKGKVVLVTAAAGTGIGSTTARRALLEGA-DVVISDYHERRLGETRDQLADLG-LGRVEAVVCDVTSTEAVDALITQTVE 97 (266)
T ss_dssp TTTCEEEESSCSSSSHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTC-SSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCchHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHHHhcC-CCceEEEEeCCCCHHHHHHHHHHHHH
Confidence 46789999998 6664 5667777788 79999998 66666655554433 2469999999877421
Q ss_pred -CCceeEEEEec
Q 014247 176 -DEEVDVIISEW 186 (428)
Q Consensus 176 -~~~~DlVvs~~ 186 (428)
-+++|++|.+.
T Consensus 98 ~~g~id~li~~A 109 (266)
T 3o38_A 98 KAGRLDVLVNNA 109 (266)
T ss_dssp HHSCCCEEEECC
T ss_pred HhCCCcEEEECC
Confidence 04789999864
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=81.77 E-value=3.8 Score=36.76 Aligned_cols=73 Identities=15% Similarity=0.180 Sum_probs=53.4
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC-----C-----
Q 014247 111 IEGKVVVDVGCGTGI---LSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI-----D----- 176 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~---ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~-----~----- 176 (428)
..+++||-.|++.|+ ++..+++.|+ +|+.++.+ +.++.+.+.+...+ .++.++.+|+.+... .
T Consensus 5 ~~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~ 81 (252)
T 3h7a_A 5 PRNATVAVIGAGDYIGAEIAKKFAAEGF-TVFAGRRNGEKLAPLVAEIEAAG--GRIVARSLDARNEDEVTAFLNAADAH 81 (252)
T ss_dssp CCSCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECcCCCHHHHHHHHHHHHhh
Confidence 467899999998874 5666677788 89999998 66666655555543 468999999876421 0
Q ss_pred CceeEEEEec
Q 014247 177 EEVDVIISEW 186 (428)
Q Consensus 177 ~~~DlVvs~~ 186 (428)
++.|++|.+.
T Consensus 82 g~id~lv~nA 91 (252)
T 3h7a_A 82 APLEVTIFNV 91 (252)
T ss_dssp SCEEEEEECC
T ss_pred CCceEEEECC
Confidence 4789999754
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=81.31 E-value=6.5 Score=36.29 Aligned_cols=74 Identities=23% Similarity=0.212 Sum_probs=54.5
Q ss_pred CCCCCEEEEEcCCCcH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC----------
Q 014247 110 FIEGKVVVDVGCGTGI---LSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI---------- 175 (428)
Q Consensus 110 ~~~~~~VLDiGcGtG~---ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~---------- 175 (428)
...+++||-.|++.|+ ++..+++.|+ +|+.++.+ +.++.+.+.+...+ .++.++.+|+.+...
T Consensus 28 ~l~gk~vlVTGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~ 104 (301)
T 3tjr_A 28 GFDGRAAVVTGGASGIGLATATEFARRGA-RLVLSDVDQPALEQAVNGLRGQG--FDAHGVVCDVRHLDEMVRLADEAFR 104 (301)
T ss_dssp CSTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHH
Confidence 3578899999998874 5566677787 89999999 76666666665543 358999999877431
Q ss_pred -CCceeEEEEec
Q 014247 176 -DEEVDVIISEW 186 (428)
Q Consensus 176 -~~~~DlVvs~~ 186 (428)
-+++|++|.+.
T Consensus 105 ~~g~id~lvnnA 116 (301)
T 3tjr_A 105 LLGGVDVVFSNA 116 (301)
T ss_dssp HHSSCSEEEECC
T ss_pred hCCCCCEEEECC
Confidence 14789999864
|
| >3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A* | Back alignment and structure |
|---|
Probab=81.28 E-value=1.9 Score=47.10 Aligned_cols=69 Identities=19% Similarity=0.097 Sum_probs=48.8
Q ss_pred CCCEEEEEcCCCcHHHHHHHHcCC-CeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccc----------------
Q 014247 112 EGKVVVDVGCGTGILSIFCAQAGA-KRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDV---------------- 173 (428)
Q Consensus 112 ~~~~VLDiGcGtG~ls~~la~~g~-~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l---------------- 173 (428)
...+++|+-||.|.+++-+.++|. ..|.++|++ ..+..-+.+. . ...++.+|+.++
T Consensus 539 ~~l~~iDLFaG~GGlslGl~~AG~~~vv~avEid~~A~~ty~~N~-----p-~~~~~~~DI~~l~~~~~~~di~~~~~~~ 612 (1002)
T 3swr_A 539 PKLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNN-----P-GSTVFTEDCNILLKLVMAGETTNSRGQR 612 (1002)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHTSEEEEEEECSSHHHHHHHHHHC-----T-TSEEECSCHHHHHHHHHHTCSBCTTCCB
T ss_pred CCCeEEEeccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhC-----C-CCccccccHHHHhhhccchhhhhhhhhh
Confidence 345899999999999999999997 678899999 5544433332 1 245666675432
Q ss_pred -cCCCceeEEEEec
Q 014247 174 -EIDEEVDVIISEW 186 (428)
Q Consensus 174 -~~~~~~DlVvs~~ 186 (428)
+..+.+|+|+..+
T Consensus 613 lp~~~~vDll~GGp 626 (1002)
T 3swr_A 613 LPQKGDVEMLCGGP 626 (1002)
T ss_dssp CCCTTTCSEEEECC
T ss_pred cccCCCeeEEEEcC
Confidence 1225799999855
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=81.26 E-value=4.5 Score=37.06 Aligned_cols=73 Identities=19% Similarity=0.258 Sum_probs=51.6
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC-----------
Q 014247 111 IEGKVVVDVGCGTGI---LSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI----------- 175 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~---ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~----------- 175 (428)
.++++||-.|++.|+ ++..+++.|+ +|+.++.+ +.++.+.+.+... ..++.++.+|+.+...
T Consensus 26 ~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 102 (283)
T 3v8b_A 26 QPSPVALITGAGSGIGRATALALAADGV-TVGALGRTRTEVEEVADEIVGA--GGQAIALEADVSDELQMRNAVRDLVLK 102 (283)
T ss_dssp -CCCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHTTT--TCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 567899999988874 4566677788 89999998 6665555544332 3468999999876421
Q ss_pred CCceeEEEEec
Q 014247 176 DEEVDVIISEW 186 (428)
Q Consensus 176 ~~~~DlVvs~~ 186 (428)
-+++|++|.+.
T Consensus 103 ~g~iD~lVnnA 113 (283)
T 3v8b_A 103 FGHLDIVVANA 113 (283)
T ss_dssp HSCCCEEEECC
T ss_pred hCCCCEEEECC
Confidence 14799999864
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=81.16 E-value=6.1 Score=35.16 Aligned_cols=73 Identities=26% Similarity=0.309 Sum_probs=53.1
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC-----------
Q 014247 111 IEGKVVVDVGCGTGI---LSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI----------- 175 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~---ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~----------- 175 (428)
..+++||-.|++.|+ ++..+++.|+ +|+.++.+ +.++.+.+.+...+ .++.++.+|+.+...
T Consensus 7 ~~~k~vlITGas~giG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (253)
T 3qiv_A 7 FENKVGIVTGSGGGIGQAYAEALAREGA-AVVVADINAEAAEAVAKQIVADG--GTAISVAVDVSDPESAKAMADRTLAE 83 (253)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 467899999988764 5666677788 79999999 76666655555443 468899999877421
Q ss_pred CCceeEEEEec
Q 014247 176 DEEVDVIISEW 186 (428)
Q Consensus 176 ~~~~DlVvs~~ 186 (428)
-+++|++|.+.
T Consensus 84 ~g~id~li~~A 94 (253)
T 3qiv_A 84 FGGIDYLVNNA 94 (253)
T ss_dssp HSCCCEEEECC
T ss_pred cCCCCEEEECC
Confidence 04789999864
|
| >4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=81.05 E-value=6.2 Score=35.63 Aligned_cols=71 Identities=20% Similarity=0.315 Sum_probs=51.5
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC------CCcee
Q 014247 111 IEGKVVVDVGCGTGI---LSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI------DEEVD 180 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~---ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~------~~~~D 180 (428)
..|+++|--|.+.|+ .+..+++.|+ +|+.+|.+ . +.+.+.++..+ .++.++.+|+.+... .++.|
T Consensus 7 L~GKvalVTGas~GIG~aiA~~la~~Ga-~Vvi~~r~~~--~~~~~~~~~~g--~~~~~~~~Dv~d~~~v~~~~~~g~iD 81 (247)
T 4hp8_A 7 LEGRKALVTGANTGLGQAIAVGLAAAGA-EVVCAARRAP--DETLDIIAKDG--GNASALLIDFADPLAAKDSFTDAGFD 81 (247)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCC--HHHHHHHHHTT--CCEEEEECCTTSTTTTTTSSTTTCCC
T ss_pred CCCCEEEEeCcCCHHHHHHHHHHHHcCC-EEEEEeCCcH--HHHHHHHHHhC--CcEEEEEccCCCHHHHHHHHHhCCCC
Confidence 678999999999885 5677888888 89999987 3 23334445544 358889999876422 26799
Q ss_pred EEEEec
Q 014247 181 VIISEW 186 (428)
Q Consensus 181 lVvs~~ 186 (428)
++|.+.
T Consensus 82 iLVNNA 87 (247)
T 4hp8_A 82 ILVNNA 87 (247)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 999864
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=81.04 E-value=1.5 Score=42.24 Aligned_cols=98 Identities=20% Similarity=0.226 Sum_probs=50.4
Q ss_pred CCCCEEEEEcCCC-cHHH-HHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC-CCceeEEEEec
Q 014247 111 IEGKVVVDVGCGT-GILS-IFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI-DEEVDVIISEW 186 (428)
Q Consensus 111 ~~~~~VLDiGcGt-G~ls-~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~-~~~~DlVvs~~ 186 (428)
.++++|+-+|+|. |... ..++..|+ +|+++|.+ .-++.+.+. .+. .+.....+..++.. -..+|+|+...
T Consensus 164 l~~~~V~ViGaG~iG~~~a~~l~~~Ga-~V~~~d~~~~~~~~~~~~---~g~--~~~~~~~~~~~l~~~~~~~DvVi~~~ 237 (369)
T 2eez_A 164 VAPASVVILGGGTVGTNAAKIALGMGA-QVTILDVNHKRLQYLDDV---FGG--RVITLTATEANIKKSVQHADLLIGAV 237 (369)
T ss_dssp BCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHH---TTT--SEEEEECCHHHHHHHHHHCSEEEECC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHh---cCc--eEEEecCCHHHHHHHHhCCCEEEECC
Confidence 4578999999953 2222 22333477 89999999 655444332 222 23222222222211 14689998754
Q ss_pred chhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 187 MGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 187 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
. ........-+.+...+.+++||.++-.
T Consensus 238 g---~~~~~~~~li~~~~l~~mk~gg~iV~v 265 (369)
T 2eez_A 238 L---VPGAKAPKLVTRDMLSLMKEGAVIVDV 265 (369)
T ss_dssp C----------CCSCHHHHTTSCTTCEEEEC
T ss_pred C---CCccccchhHHHHHHHhhcCCCEEEEE
Confidence 1 111000111234556778999987743
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=80.68 E-value=1.6 Score=42.00 Aligned_cols=90 Identities=13% Similarity=0.016 Sum_probs=53.7
Q ss_pred CCCCEEEEEcCC--CcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc------CCCcee
Q 014247 111 IEGKVVVDVGCG--TGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE------IDEEVD 180 (428)
Q Consensus 111 ~~~~~VLDiGcG--tG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~------~~~~~D 180 (428)
.+|.+||-+|++ .|.++..+|+. |+ +|+++. + +-.+.++ +.|.. .++...-.++. ..+.+|
T Consensus 163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga-~Vi~~~-~~~~~~~~~----~lGa~---~vi~~~~~~~~~~v~~~t~g~~d 233 (371)
T 3gqv_A 163 SKPVYVLVYGGSTATATVTMQMLRLSGY-IPIATC-SPHNFDLAK----SRGAE---EVFDYRAPNLAQTIRTYTKNNLR 233 (371)
T ss_dssp SSCCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEE-CGGGHHHHH----HTTCS---EEEETTSTTHHHHHHHHTTTCCC
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHHCCC-EEEEEe-CHHHHHHHH----HcCCc---EEEECCCchHHHHHHHHccCCcc
Confidence 688999999983 67888888876 77 788885 5 5444443 34432 23322111110 124599
Q ss_pred EEEEecchhhhcchhhHHHHHHHHhccc-ccCeEEEccC
Q 014247 181 VIISEWMGYMLLYESMLGSVITARDRWL-KRGGLILPSY 218 (428)
Q Consensus 181 lVvs~~~~~~l~~~~~~~~~l~~~~~~L-kpgG~lv~~~ 218 (428)
+|+-.. .. ...+....+.| ++||+++...
T Consensus 234 ~v~d~~-----g~----~~~~~~~~~~l~~~~G~iv~~g 263 (371)
T 3gqv_A 234 YALDCI-----TN----VESTTFCFAAIGRAGGHYVSLN 263 (371)
T ss_dssp EEEESS-----CS----HHHHHHHHHHSCTTCEEEEESS
T ss_pred EEEECC-----Cc----hHHHHHHHHHhhcCCCEEEEEe
Confidence 999632 11 12344455667 6999887543
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=80.52 E-value=17 Score=33.27 Aligned_cols=88 Identities=22% Similarity=0.246 Sum_probs=53.2
Q ss_pred CEEEEEcCCC-c-HHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEE--------c---ccccccC-CCc
Q 014247 114 KVVVDVGCGT-G-ILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLH--------G---RVEDVEI-DEE 178 (428)
Q Consensus 114 ~~VLDiGcGt-G-~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~--------~---d~~~l~~-~~~ 178 (428)
.+|+-||+|. | .++..+++.|. +|+.+|.+ +.++..++. + +.+.. . +..++.. -..
T Consensus 4 m~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~----g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (316)
T 2ew2_A 4 MKIAIAGAGAMGSRLGIMLHQGGN-DVTLIDQWPAHIEAIRKN----G----LIADFNGEEVVANLPIFSPEEIDHQNEQ 74 (316)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHH----C----EEEEETTEEEEECCCEECGGGCCTTSCC
T ss_pred CeEEEECcCHHHHHHHHHHHhCCC-cEEEEECCHHHHHHHHhC----C----EEEEeCCCeeEecceeecchhhcccCCC
Confidence 4789999985 2 35556666676 89999998 655443322 2 22211 0 1111110 027
Q ss_pred eeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 179 VDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 179 ~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
+|+|+... .......+++.+...|+++..++.
T Consensus 75 ~d~vi~~v------~~~~~~~v~~~l~~~l~~~~~iv~ 106 (316)
T 2ew2_A 75 VDLIIALT------KAQQLDAMFKAIQPMITEKTYVLC 106 (316)
T ss_dssp CSEEEECS------CHHHHHHHHHHHGGGCCTTCEEEE
T ss_pred CCEEEEEe------ccccHHHHHHHHHHhcCCCCEEEE
Confidence 89999743 123467788888888988876664
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=80.05 E-value=6.8 Score=35.59 Aligned_cols=75 Identities=16% Similarity=0.162 Sum_probs=53.2
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCC-CCcEEEEEcccccccC----------
Q 014247 111 IEGKVVVDVGCGTGI---LSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNL-TDKVIVLHGRVEDVEI---------- 175 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~---ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~-~~~v~~~~~d~~~l~~---------- 175 (428)
..+++||-.|++.|+ ++..+++.|+ +|+.++.+ +.++.+.+.+...+. ..++.++.+|+.+...
T Consensus 9 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 87 (281)
T 3svt_A 9 FQDRTYLVTGGGSGIGKGVAAGLVAAGA-SVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAVTA 87 (281)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHHHH
Confidence 567899999988774 5566677788 89999998 666665555554432 2268999999876421
Q ss_pred -CCceeEEEEec
Q 014247 176 -DEEVDVIISEW 186 (428)
Q Consensus 176 -~~~~DlVvs~~ 186 (428)
-++.|++|.+.
T Consensus 88 ~~g~id~lv~nA 99 (281)
T 3svt_A 88 WHGRLHGVVHCA 99 (281)
T ss_dssp HHSCCCEEEECC
T ss_pred HcCCCCEEEECC
Confidence 14789999854
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 428 | ||||
| d1oria_ | 316 | c.66.1.6 (A:) Protein arginine N-methyltransferase | 4e-92 | |
| d1g6q1_ | 328 | c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Ba | 1e-87 | |
| d2fyta1 | 311 | c.66.1.6 (A:238-548) Protein arginine N-methyltran | 3e-86 | |
| d2frna1 | 260 | c.66.1.47 (A:19-278) Hypothetical protein PH0793 { | 3e-11 | |
| d1ri5a_ | 252 | c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf | 2e-10 | |
| d1l3ia_ | 186 | c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi | 1e-08 | |
| d1wzna1 | 251 | c.66.1.43 (A:1-251) Hypothetical methyltransferase | 2e-07 | |
| d1y8ca_ | 246 | c.66.1.43 (A:) Putative methyltransferase CAC2371 | 4e-07 | |
| d2p7ia1 | 225 | c.66.1.41 (A:22-246) Hypothetical protein ECA1738 | 1e-06 | |
| d1u2za_ | 406 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 2e-06 | |
| d1xvaa_ | 292 | c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra | 2e-06 | |
| d2esra1 | 152 | c.66.1.46 (A:28-179) Putative methyltransferase SP | 4e-06 | |
| d1vl5a_ | 231 | c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill | 8e-06 | |
| d2gh1a1 | 281 | c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac | 9e-06 | |
| d1xxla_ | 234 | c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus | 1e-05 | |
| d1wy7a1 | 201 | c.66.1.32 (A:4-204) Hypothetical protein PH1948 {A | 1e-05 | |
| d1nkva_ | 245 | c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric | 2e-05 | |
| d1yb2a1 | 250 | c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T | 2e-05 | |
| d1ne2a_ | 197 | c.66.1.32 (A:) Hypothetical protein Ta1320 {Archae | 7e-05 | |
| d2a14a1 | 257 | c.66.1.15 (A:5-261) Indolethylamine N-methyltransf | 1e-04 | |
| d1nw3a_ | 328 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 1e-04 | |
| d2as0a2 | 324 | c.66.1.51 (A:73-396) Hypothetical protein PH1915, | 1e-04 | |
| d2g72a1 | 263 | c.66.1.15 (A:18-280) Phenylethanolamine N-methyltr | 2e-04 | |
| d2i6ga1 | 198 | c.66.1.44 (A:1-198) Putative methyltransferase Teh | 2e-04 | |
| d1g8aa_ | 227 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyro | 4e-04 | |
| d1g8sa_ | 230 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Meth | 6e-04 | |
| d1dhra_ | 236 | c.2.1.2 (A:) Dihydropteridin reductase (pteridine | 0.004 |
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 278 bits (713), Expect = 4e-92
Identities = 124/341 (36%), Positives = 190/341 (55%), Gaps = 39/341 (11%)
Query: 80 SYAHVGIHEEMIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVY 139
SYAH GIHEEM+KD VRT TYR ++ N+ + KVV+DVG GTGIL +F A+AGA++V
Sbjct: 1 SYAHFGIHEEMLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVI 60
Query: 140 AVDASDIAVQANEVVKANNLTDKVIVLHGRVEDVE-IDEEVDVIISEWMGYMLLYESMLG 198
++ S I+ A ++VKAN L V ++ G+VE+VE E+VD+IISEWMGY L YESML
Sbjct: 61 GIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLN 120
Query: 199 SVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAMMPLAKQCA 258
+V+ ARD+WL GLI P ATLY+ + I +W NVYG DMS + K A
Sbjct: 121 TVLHARDKWLAPDGLIFPDRATLYVTAIEDRQYKDYKIHWWENVYGFDMSCI----KDVA 176
Query: 259 FEEPSVETITGENVLTWPHVVKHVDCYTIQIHELESIATTFKFKSMMRAPLHGFAFWFDV 318
+EP V+ + + ++T ++K VD YT+++ + + + F + +H +F++
Sbjct: 177 IKEPLVDVVDPKQLVTNACLIKEVDIYTVKVED-LTFTSPFCLQVKRNDYVHALVAYFNI 235
Query: 319 EFSTPAISPANNHIPPVVVGSSNNHPMDGCQKKKRANPNEALVLSTAPEDPPTHWQQTMI 378
EF+ ++ ST+PE P THW+QT+
Sbjct: 236 EFT---------------------------------RCHKRTGFSTSPESPYTHWKQTVF 262
Query: 379 YFYDPIEVEQDQLIEGSVVLSQSKENARFMNIHLEYASGGR 419
Y D + V+ + I G++ + + +N R ++ ++ G+
Sbjct: 263 YMEDYLTVKTGEEIFGTIGMRPNAKNNRDLDFTIDLDFKGQ 303
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 267 bits (683), Expect = 1e-87
Identities = 130/339 (38%), Positives = 187/339 (55%), Gaps = 37/339 (10%)
Query: 77 YFHSYAHVGIHEEMIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAK 136
YF SY H GIHEEM++D VRT +YR AI+QN+ + K+V+DVGCGTGILS+F A+ GAK
Sbjct: 3 YFDSYDHYGIHEEMLQDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAK 62
Query: 137 RVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDVEI-DEEVDVIISEWMGYMLLYES 195
V VD S I A E+V+ N +DK+ +L G++EDV + +VD+IISEWMGY LLYES
Sbjct: 63 HVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYFLLYES 122
Query: 196 MLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAMMPLAK 255
M+ +V+ ARD +L GGLI P ++++A + E +++W++VYG D S
Sbjct: 123 MMDTVLYARDHYLVEGGLIFPDKCSIHLAGLEDSQYKDEKLNYWQDVYGFDYSPF----V 178
Query: 256 QCAFEEPSVETITGENVLTWPHVVKHVDCYTIQIHELESIATTFKFKSMMRAPLHGFAFW 315
EP V+T+ NV T + D T++I +L + FK + + ++G W
Sbjct: 179 PLVLHEPIVDTVERNNVNTTSDKLIEFDLNTVKISDLA-FKSNFKLTAKRQDMINGIVTW 237
Query: 316 FDVEFSTPAISPANNHIPPVVVGSSNNHPMDGCQKKKRANPNEALVLSTAPEDPPTHWQQ 375
FD+ F P + ST P P THW+Q
Sbjct: 238 FDIVFPAP-------------------------------KGKRPVEFSTGPHAPYTHWKQ 266
Query: 376 TMIYFYDPIEVEQDQLIEGSVVLSQSKENARFMNIHLEY 414
T+ YF D ++ E IEG +V S +++N R +NI + Y
Sbjct: 267 TIFYFPDDLDAETGDTIEGELVCSPNEKNNRDLNIKISY 305
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 263 bits (673), Expect = 3e-86
Identities = 124/345 (35%), Positives = 198/345 (57%), Gaps = 38/345 (11%)
Query: 78 FHSYAHVGIHEEMIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKR 137
F SY H GIHEEM+KD++RTE+YR I QN + KVV+DVGCGTGILS+F A+AGAK+
Sbjct: 1 FSSYGHYGIHEEMLKDKIRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKK 60
Query: 138 VYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDVEI-DEEVDVIISEWMGYMLLYESM 196
V VD S+I QA ++++ N L D + ++ G++E+V + E+VDVIISEWMGY LL+ESM
Sbjct: 61 VLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYFLLFESM 120
Query: 197 LGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAMMPLAKQ 256
L SV+ A++++L +GG + P T+ + V+ +++++ I FW +VYG MS M K+
Sbjct: 121 LDSVLYAKNKYLAKGGSVYPDICTISLVAVSDVNKHADRIAFWDDVYGFKMSCM----KK 176
Query: 257 CAFEEPSVETITGENVLTWPHVVKHVDCYTIQIHELESIATTFKFKSMMRAPLHGFAFWF 316
E VE + + +++ P +KH+DC+T I +LE ++ F K + A +F
Sbjct: 177 AVIPEAVVEVLDPKTLISEPCGIKHIDCHTTSISDLE-FSSDFTLKITRTSMCTAIAGYF 235
Query: 317 DVEFSTPAISPANNHIPPVVVGSSNNHPMDGCQKKKRANPNEALVLSTAPEDPPTHWQQT 376
D+ F N + +V ST P+ THW+QT
Sbjct: 236 DIYFE--------------------------------KNCHNRVVFSTGPQSTKTHWKQT 263
Query: 377 MIYFYDPIEVEQDQLIEGSVVLSQSKENARFMNIHLEYASGGRSF 421
+ P V+ + ++G V + ++K++ R + + L + +++
Sbjct: 264 VFLLEKPFSVKAGEALKGKVTVHKNKKDPRSLTVTLTLNNSTQTY 308
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Score = 61.3 bits (148), Expect = 3e-11
Identities = 27/137 (19%), Positives = 51/137 (37%), Gaps = 12/137 (8%)
Query: 79 HSYAHVGIHEEMIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRV 138
+ + + M E R A + ++VVD+ G G LS+ A G +V
Sbjct: 78 GIKYKLDVAKIMFSPANVKERVRMAKV----AKPDELVVDMFAGIGHLSLPIAVYGKAKV 133
Query: 139 YAVDASDIAVQ-ANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWMGYMLLYESML 197
A++ + E + N + D++ + D + D I+ MGY++ +
Sbjct: 134 IAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRIL---MGYVVRTHEFI 190
Query: 198 GSVITARDRWLKRGGLI 214
+ K G +I
Sbjct: 191 PKAL----SIAKDGAII 203
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Score = 58.8 bits (141), Expect = 2e-10
Identities = 33/205 (16%), Positives = 58/205 (28%), Gaps = 19/205 (9%)
Query: 112 EGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAV-QANEVVKANNLTDKVIVLHGRV 170
G V+D+GCG G + +AG Y VD +++++ A + KV
Sbjct: 24 RGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDS 83
Query: 171 EDVEIDEE---VDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVT 227
+D + Y L R L+ GG + + +
Sbjct: 84 YGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMT----VPSRDV 139
Query: 228 HPDRYSESIDFWRNVYGIDMSAMMPLAKQCAFEEPSVETITGENVLTWPHVVKHVDCYTI 287
+RY + + Y I++ E E T V + Y +
Sbjct: 140 ILERYKQG-RMSNDFYKIELE----------KMEDVPMESVREYRFTLLDSVNNCIEYFV 188
Query: 288 QIHELESIATTFKFKSMMRAPLHGF 312
+ + R F
Sbjct: 189 DFTRMVDGFKRLGLSLVERKGFIDF 213
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 52.1 bits (124), Expect = 1e-08
Identities = 29/165 (17%), Positives = 56/165 (33%), Gaps = 9/165 (5%)
Query: 97 TETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQANEVVKA 156
R IM + V VDVGCGTG +++ A + + ++
Sbjct: 18 AMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQR 77
Query: 157 NNLTDKVIVLHGRVEDV-EIDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLIL 215
+ L D V ++ G + ++D+ + G L ++ LK GG I+
Sbjct: 78 HGLGDNVTLMEGDAPEALCKIPDIDIAVVGGSGGELQE------ILRIIKDKLKPGGRII 131
Query: 216 PSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAMMPLAKQCAFE 260
+ L + F N+ ++++ L +
Sbjct: 132 VTAILLETKFEAM--ECLRDLGFDVNITELNIARGRALDRGTMMV 174
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 49.7 bits (117), Expect = 2e-07
Identities = 29/169 (17%), Positives = 59/169 (34%), Gaps = 4/169 (2%)
Query: 77 YFHSYAHV--GIHEEMIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAG 134
+ A I+ I+ + I + + E + V+D+ CGTGI ++ A+
Sbjct: 4 LYTLLAEYYDTIYRRRIERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAE-R 62
Query: 135 AKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWMGYMLLYE 194
V +D + ++ + G V ++ E D + + M E
Sbjct: 63 GYEVVGLDLHEEMLRVARRKAKERNLKIEFL-QGDVLEIAFKNEFDAVTMFFSTIMYFDE 121
Query: 195 SMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVY 243
L + + LK GG+ + + + P ++E + V
Sbjct: 122 EDLRKLFSKVAEALKPGGVFITDFPCWFYGGRDGPVVWNEQKGEEKLVI 170
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Score = 48.5 bits (114), Expect = 4e-07
Identities = 28/228 (12%), Positives = 70/228 (30%), Gaps = 13/228 (5%)
Query: 77 YFHSYAHVGIHEEMIKDRVRTETYRAAIMQ--NQSFIEGKVVVDVGCGTGILSIFCAQAG 134
++ +AH+ ++++I+ V + + I++ ++ + +D+ CGTG L+
Sbjct: 2 CYNKFAHI--YDKLIRADVDYKKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKF 59
Query: 135 AKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWMGYMLLYE 194
+AVD S + E + + + + ++
Sbjct: 60 KNT-WAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNYIIDS 118
Query: 195 SMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAMMPLA 254
L A LK GG+ + + Y + D Y + ++
Sbjct: 119 DDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFEDDLVS 178
Query: 255 KQCAFEEPSVETITGENVLTWPHVVKHVDCYTIQIHELESIATTFKFK 302
+F E + + + + ++E +
Sbjct: 179 MYISFFVRDGE--------FYKRFDEEHEERAYKEEDIEKYLKHGQLN 218
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Score = 46.8 bits (110), Expect = 1e-06
Identities = 21/168 (12%), Positives = 51/168 (30%), Gaps = 16/168 (9%)
Query: 109 SFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHG 168
F ++++G G + + + V+AS+ A+ + + +T
Sbjct: 17 PFFRPGNLLELGSFKGDFTSRLQEHF-NDITCVEASEEAISHAQGRLKDGITYIHSRFED 75
Query: 169 RVEDVEIDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLI---------LPSYA 219
D V + E + + + + D WL GG + +
Sbjct: 76 AQLPRRYDNIVLTHVLEHI------DDPVALLKRINDDWLAEGGRLFLVCPNANAVSRQI 129
Query: 220 TLYMAPVTHPDRYSESIDFWRNVYGIDMSAMMPLAKQCAFEEPSVETI 267
+ M ++H +E+ + + + A + + I
Sbjct: 130 AVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTYRSGI 177
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.4 bits (112), Expect = 2e-06
Identities = 26/182 (14%), Positives = 51/182 (28%), Gaps = 27/182 (14%)
Query: 112 EGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDASDIAVQ-ANEVVKANNLTDKVIVLHGR 169
+G +D+G G G + A G + + D A + K+ +
Sbjct: 216 KGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLN 275
Query: 170 VEDVEI------DEEVDVIISE----WMGYMLLYESMLGSVITARDRWLKRGGLILPSYA 219
+ + + V +I + + L E + + + K G I+ S
Sbjct: 276 NVEFSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLN-KKVEKILQTAKVGCKII-SLK 333
Query: 220 TLYMAPVTHPDRYSESIDFWRNVYGIDMSAMMPLAKQCAFEEPSVETITGENVLTWPHVV 279
+L E+I ++ +E SV T + V
Sbjct: 334 SLRSLTYQINFYNVENI------------FNRLKVQRYDLKEDSVS-WTHSGGEYYISTV 380
Query: 280 KH 281
Sbjct: 381 ME 382
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 46.9 bits (110), Expect = 2e-06
Identities = 31/236 (13%), Positives = 60/236 (25%), Gaps = 20/236 (8%)
Query: 77 YFHSYAHVGIHEEMIKD-RVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGA 135
Y A + + I D R RT Y+A ++ V+DV CGTG+ SI + G
Sbjct: 21 YADGEAA-RVWQLYIGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGF 79
Query: 136 KRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVED-------VEIDEEVDVIISEWMG 188
+ + A + + V + D +I
Sbjct: 80 SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNS 139
Query: 189 YMLL-----YESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVY 243
+ L +S + ++ GGL+ + + +
Sbjct: 140 FAHLPDSKGDQSEHRLALKNIASMVRPGGLL--VIDHRNYDYILSTGCAPPGKNIYYKSD 197
Query: 244 GIDMSAMMPL----AKQCAFEEPSVETITGENVLTWPHVVKHVDCYTIQIHELESI 295
L + +V+ + Y + +
Sbjct: 198 LTKDITTSVLTVNNKAHMVTLDYTVQVPGAGRDGAPGFSKFRLSYYPHCLASFTEL 253
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} Length = 152 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Score = 44.5 bits (104), Expect = 4e-06
Identities = 12/110 (10%), Positives = 32/110 (29%), Gaps = 5/110 (4%)
Query: 108 QSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQANEVVKANNLTDKVIV-- 165
+ G V+D+ G+G L+I G V+ + A + +
Sbjct: 10 GPYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLL 69
Query: 166 -LHGRVEDVEIDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLI 214
+ + D++ + + + ++ L ++
Sbjct: 70 KMEAERAIDCLTGRFDLVFLDPPYAKETIVATIEALAAK--NLLSEQVMV 117
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Score = 44.6 bits (104), Expect = 8e-06
Identities = 32/165 (19%), Positives = 62/165 (37%), Gaps = 4/165 (2%)
Query: 102 AAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQANEVVKANNLTD 161
A +MQ + + V+DV G G ++ A K V A D ++ ++ N
Sbjct: 5 AKLMQIAALKGNEEVLDVATGGGHVANAFAPFVKK-VVAFDLTEDILKVARAFIEGNGHQ 63
Query: 162 KVIVLHGRVEDVEIDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGG-LILPSYAT 220
+V + G E + +E I++ + + S ++ R LK+GG L+L +
Sbjct: 64 QVEYVQGDAEQMPFTDERFHIVTCRIAAH--HFPNPASFVSEAYRVLKKGGQLLLVDNSA 121
Query: 221 LYMAPVTHPDRYSESIDFWRNVYGIDMSAMMPLAKQCAFEEPSVE 265
Y E + + S + + ++ FE +
Sbjct: 122 PENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFELEELH 166
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Score = 44.9 bits (105), Expect = 9e-06
Identities = 32/210 (15%), Positives = 71/210 (33%), Gaps = 24/210 (11%)
Query: 92 KDRVRTETYRAAIMQNQSFI-EGKVVVDVGCGTGILSIFCAQAGAK--RVYAVDASDIAV 148
+D + Y + ++ I + +VD GCG G L + + + +D+ + +
Sbjct: 6 RDLYYNDDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLL 65
Query: 149 QANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWMGYMLLYESMLGSVITARDRWL 208
+ D + E D+ I LL+ + +++ +
Sbjct: 66 AEARELFRLLPYDSEFLEGDATEIELNDKYDIAICH----AFLLHMTTPETMLQKMIHSV 121
Query: 209 KRGGLIL---PSYATLYMAPVTHPDRYSESIDFW-----------RNVYGIDMSAMMP-L 253
K+GG I+ P + + + + ++ SE I RN ++ +P
Sbjct: 122 KKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNIGMKIPIY 181
Query: 254 AKQCAFEEPSVETITGENVLTWPHVVKHVD 283
+ + +E + V + H D
Sbjct: 182 LSELGVKN--IECRVSDKVNFLDSNMHHND 209
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Score = 44.2 bits (103), Expect = 1e-05
Identities = 21/104 (20%), Positives = 37/104 (35%), Gaps = 3/104 (2%)
Query: 112 EGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVE 171
V+D+G G G ++ + + VDA+ V+ + V G E
Sbjct: 16 AEHRVLDIGAGAGHTALAFSPYVQE-CIGVDATKEMVEVASSFAQEKGVENVRFQQGTAE 74
Query: 172 DVEIDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLIL 215
+ ++ II Y + S + + R LK+ G L
Sbjct: 75 SLPFPDDSFDII--TCRYAAHHFSDVRKAVREVARVLKQDGRFL 116
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 201 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 43.7 bits (102), Expect = 1e-05
Identities = 27/75 (36%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Query: 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQ-ANEVVKANNLTDKVIVLHGR 169
IEGKVV D+G GTG+LS GAK V V+ AV E + KV +
Sbjct: 45 IEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVS 104
Query: 170 VEDVEIDEEVDVIIS 184
E + VD++I
Sbjct: 105 ----EFNSRVDIVIM 115
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Score = 43.4 bits (101), Expect = 2e-05
Identities = 24/176 (13%), Positives = 56/176 (31%), Gaps = 6/176 (3%)
Query: 97 TETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQ-ANEVVK 155
TE A + + G ++D+G G+G + A+ +D S + A +
Sbjct: 18 TEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAE 77
Query: 156 ANNLTDKVIVLHGRVEDVEIDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLIL 215
++++V +H +E+ DV + LK GG++L
Sbjct: 78 ELGVSERVHFIHNDAAGYVANEKCDVAACVG---ATWIAGGFAGAEELLAQSLKPGGIML 134
Query: 216 PSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAMMPLAKQCAFEEPSVETITGEN 271
P + +++ + + ++ ++ + E
Sbjct: 135 IGEPYWRQLPA--TEEIAQACGVSSTSDFLTLPGLVGAFDDLGYDVVEMVLADQEG 188
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Score = 43.5 bits (102), Expect = 2e-05
Identities = 19/127 (14%), Positives = 45/127 (35%), Gaps = 16/127 (12%)
Query: 113 GKVVVDVGCGTGILSIFCAQA--GAKRVYAVDASDIAVQ-ANEVVKANNLTDKVIVLHGR 169
G +++VG G+G +S + A G + V+ + ++ A + + V
Sbjct: 86 GMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSD 145
Query: 170 VEDVEIDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHP 229
+ D D+ D +I++ + + +K G + Y+
Sbjct: 146 IADFISDQMYDAVIADIPDPWNHVQKIA--------SMMKPGSVAT-----FYLPNFDQS 192
Query: 230 DRYSESI 236
++ S+
Sbjct: 193 EKTVLSL 199
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 197 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 41.3 bits (96), Expect = 7e-05
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQANEVVKANNLTDKVIV 165
I G+ V+D G G GIL+ GA+ V A D A+ E K N +V
Sbjct: 47 IGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAI---ETAKRNCGGVNFMV 98
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.6 bits (96), Expect = 1e-04
Identities = 25/244 (10%), Positives = 54/244 (22%), Gaps = 45/244 (18%)
Query: 71 TDFDV-AYFHSYAHVGIHEEMIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIF 129
F Y +Y + ++ ++G ++D+G G I +
Sbjct: 9 KHFLPRDYLATYYSFDGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLIDIGSGPTIYQVL 68
Query: 130 CAQAGAKRVYAVDASDIAVQ--------ANEVVKANNLTDKVIVLHGRVEDVEIDEE--- 178
A + + D +D + L G E EE
Sbjct: 69 AACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR 128
Query: 179 ------------------------VDVIISEWM-GYMLLYESMLGSVITARDRWLKRGGL 213
D +++ + + LK GG
Sbjct: 129 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGH 188
Query: 214 ILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAMMPLAKQCAFEEPSVETITGENVL 273
++ + VT + ++ + F+ + +
Sbjct: 189 LVTT--------VTLRLPSYMVGKREFSCVALEKGEVEQAVLDAGFDIEQLLHSPQSYSV 240
Query: 274 TWPH 277
T
Sbjct: 241 TNAA 244
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.8 bits (97), Expect = 1e-04
Identities = 24/135 (17%), Positives = 42/135 (31%), Gaps = 12/135 (8%)
Query: 112 EGKVVVDVGCGTGILSIFCAQAG-AKRVYAVDASDIAVQANEVVKANNLT---------D 161
+ + VD+G G G + + A A K Y V+ +DI + E +
Sbjct: 151 DDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHA 210
Query: 162 KVIVLHGRVEDVEIDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATL 221
+ + G E E + ++ + + R +K GG I+ S
Sbjct: 211 EYTLERGDFLSEEWRERIANTSVIFVNNFAFGPEVDH-QLKERFANMKEGGRIV-SSKPF 268
Query: 222 YMAPVTHPDRYSESI 236
R I
Sbjct: 269 APLNFRINSRNLSDI 283
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 324 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 41.4 bits (96), Expect = 1e-04
Identities = 34/216 (15%), Positives = 64/216 (29%), Gaps = 18/216 (8%)
Query: 7 YSNGHHHHHQPHQQERERMGGGLTSHKDRARRGGRRSRDSLRASEHQQQQQQQQQNDRKP 66
S G + + G+ + ++ RR + ++ ++
Sbjct: 54 SSAGMERFKLDVAEAIMEVEPGIETVFEKNTGRSRRREGL--------PEIERVLLGKEK 105
Query: 67 ATPCTDFDVAYFHSYAHVGIHEEMIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGIL 126
A F + K + + + G V+DV TG
Sbjct: 106 YRTIIQEGRAKFI------VDMRGQKTGFFLDQRENRLALEKWVQPGDRVLDVFTYTGGF 159
Query: 127 SIFCAQAGAKRVYAVDASDIAVQ-ANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISE 185
+I A AGA V +D S A++ A E K N + D++ + G + E E
Sbjct: 160 AIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVG---SAFEEMEKLQKKGE 216
Query: 186 WMGYMLLYESMLGSVITARDRWLKRGGLILPSYATL 221
++L L+ + + L
Sbjct: 217 KFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNL 252
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} Length = 263 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.0 bits (95), Expect = 2e-04
Identities = 8/65 (12%), Positives = 24/65 (36%), Gaps = 1/65 (1%)
Query: 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQ-ANEVVKANNLTDKVIVLHGR 169
+ G+ ++D+G G + + A + + + D ++ Q ++ +
Sbjct: 53 VSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQH 112
Query: 170 VEDVE 174
+E
Sbjct: 113 ACLIE 117
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Score = 39.6 bits (91), Expect = 2e-04
Identities = 29/128 (22%), Positives = 50/128 (39%), Gaps = 2/128 (1%)
Query: 88 EEMIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIA 147
E ++ + ++ + +D+GCG G S++ A G V A D + +
Sbjct: 6 ENYFTEKYGLTRTHSDVLAAAKVVAPGRTLDLGCGNGRNSLYLAANGY-DVTAWDKNPAS 64
Query: 148 VQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWMGYMLLYESMLGSVITARDRW 207
+ E +KA D + + + D E D I+S + M L + +I R
Sbjct: 65 MANLERIKAAEGLDNLQTDLVDLNTLTFDGEYDFILS-TVVMMFLEAQTIPGLIANMQRC 123
Query: 208 LKRGGLIL 215
K GG L
Sbjct: 124 TKPGGYNL 131
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 39.3 bits (91), Expect = 4e-04
Identities = 22/124 (17%), Positives = 47/124 (37%), Gaps = 12/124 (9%)
Query: 102 AAIMQNQSFI---EGKVVVDVGCGTGILSIFCAQA--GAKRVYAVDASDIAV-QANEVVK 155
AAIM GK V+ +G +G + + +++ ++ S + + +V+
Sbjct: 60 AAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVE 119
Query: 156 ANNLTDKVIVLHGRVEDVEIDEE-VDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLI 214
++ + E+ VDVI + + +I + +LKRGG
Sbjct: 120 ERRNIVPILGDATKPEEYRALVPKVDVIF-----EDVAQPTQAKILIDNAEVYLKRGGYG 174
Query: 215 LPSY 218
+ +
Sbjct: 175 MIAV 178
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 38.9 bits (90), Expect = 6e-04
Identities = 17/118 (14%), Positives = 36/118 (30%), Gaps = 7/118 (5%)
Query: 102 AAIMQNQSFI---EGKVVVDVGCGTGILSIFCAQAG-AKRVYAVDASDIAVQANEVVKAN 157
AAI++ + ++ +G G A VYA++ + ++ A
Sbjct: 61 AAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAE 120
Query: 158 NLTDKVIVLHGRVEDVEIDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLIL 215
I+ + V + + +I +LK+GG +
Sbjct: 121 RENIIPILGDANKPQEYANIVEKVDVIYEDVAQ---PNQAEILIKNAKWFLKKGGYGM 175
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 236 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 36.3 bits (83), Expect = 0.004
Identities = 21/160 (13%), Positives = 45/160 (28%), Gaps = 12/160 (7%)
Query: 112 EGKVVVDVGCGTGI---LSIFCAQAGAKRVYAVD--ASDIAVQANEVVKANNLTDKVIVL 166
E + V+ G + V ++D ++ A + V ++ T++ +
Sbjct: 1 EARRVLVYGGRGALGSRCVQAFRARNW-WVASIDVVENEEASASVIVKMTDSFTEQADQV 59
Query: 167 HGRVEDVEIDEEVDVII--SEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMA 224
V + D++VD I+ + L + I AT ++
Sbjct: 60 TAEVGKLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLK 119
Query: 225 PVTHPDRYSESIDFWRNVYGIDMS----AMMPLAKQCAFE 260
I A+ L + A +
Sbjct: 120 EGGLLTLAGAKAALDGTPGMIGYGMAKGAVHQLCQSLAGK 159
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 428 | |||
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 100.0 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 100.0 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 100.0 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.83 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.83 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.82 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.82 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.78 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.75 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.74 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.74 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.74 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.73 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.73 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.72 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.71 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.71 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.7 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.69 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.69 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.68 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.68 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.67 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.67 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.66 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.63 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.62 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.6 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.6 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.57 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.56 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.56 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.55 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.54 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.51 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.51 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.5 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.5 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.47 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.47 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.46 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.45 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.45 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.45 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.42 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.4 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.39 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.39 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.38 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.36 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 99.36 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.33 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 99.31 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 99.31 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.3 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.3 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 99.29 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.29 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.28 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 99.22 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 99.21 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 99.2 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 99.2 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 99.17 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 99.09 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 99.07 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 99.0 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 98.98 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 98.94 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 98.93 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.91 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.82 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 98.79 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 98.72 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 98.7 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.68 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 98.67 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.61 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.56 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.55 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.51 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 98.46 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.41 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 98.4 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.4 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.38 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.36 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.36 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.36 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.26 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 98.19 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 98.17 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 98.16 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 98.16 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 98.15 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 98.09 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 97.86 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 97.78 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 97.67 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 97.64 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 97.28 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 97.17 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 97.13 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 97.03 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 97.01 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 96.93 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 96.83 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 96.68 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 96.67 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 96.65 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 96.36 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 96.35 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 96.29 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 96.17 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 96.01 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 95.81 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 95.76 | |
| d1o9ga_ | 249 | rRNA methyltransferase AviRa {Streptomyces viridoc | 95.67 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 95.3 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 95.22 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 94.98 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 94.28 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 94.27 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 94.26 | |
| d2uyoa1 | 297 | Putative methyltransferase ML2640 {Mycobacterium l | 94.23 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 94.14 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 93.64 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 93.63 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 93.55 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 93.54 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 93.48 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 93.09 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 92.98 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 92.51 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 92.5 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 92.19 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 92.0 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 91.95 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 91.76 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 91.52 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 91.46 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 91.37 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 91.32 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 90.63 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 90.4 | |
| d2py6a1 | 395 | Methyltransferase FkbM {Methylobacillus flagellatu | 90.13 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 90.08 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 89.92 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 89.84 | |
| d1rjda_ | 328 | Leucine carboxy methyltransferase Ppm1 {Baker's ye | 89.7 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 89.66 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 89.66 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 89.49 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 89.4 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 89.17 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 88.97 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 88.78 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 88.51 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 88.35 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 87.39 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 86.34 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 85.88 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 85.74 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 85.41 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 85.39 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 85.14 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 84.72 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 84.4 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 84.18 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 84.1 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 83.27 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 83.07 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 82.81 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 82.38 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 82.35 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 81.86 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 81.83 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 81.03 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 80.99 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 80.84 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 80.67 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 80.38 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 80.36 |
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=5.8e-55 Score=423.62 Aligned_cols=312 Identities=42% Similarity=0.774 Sum_probs=285.2
Q ss_pred HHHhhhccchhhhhhccChhhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeChHHHHHHHHHHH
Q 014247 76 AYFHSYAHVGIHEEMIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQANEVVK 155 (428)
Q Consensus 76 ~~f~~y~~~~~~~~~~~d~~r~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s~~~~~a~~~~~ 155 (428)
.||++|.+++.|..|++|..|+..|.++|.+.....++++|||||||+|.+++.+|++|+++|+|+|.++++..|+++++
T Consensus 2 ~yf~~y~~~~~h~~ml~D~~r~~~y~~aI~~~~~~~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~ 81 (328)
T d1g6q1_ 2 YYFDSYDHYGIHEEMLQDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVE 81 (328)
T ss_dssp CCCCCCCCHHHHHHHHTCHHHHHHHHHHHHHHHHHHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESSTHHHHHHHHHH
T ss_pred CcchhhcCchHHHHHhCCHHHHHHHHHHHHhccccCCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHH
Confidence 48999999999999999999999999999887666789999999999999999999999999999999988889999999
Q ss_pred HCCCCCcEEEEEcccccccCC-CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhh
Q 014247 156 ANNLTDKVIVLHGRVEDVEID-EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSE 234 (428)
Q Consensus 156 ~~~~~~~v~~~~~d~~~l~~~-~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~ 234 (428)
.+++.++++++++++.+++++ ++||+|+++++++.+.++..+..++.++.++|||||+++|+.+++|++++....++.+
T Consensus 82 ~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~iiP~~~~~~~~~v~~~~l~~~ 161 (328)
T d1g6q1_ 82 LNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFPDKCSIHLAGLEDSQYKDE 161 (328)
T ss_dssp HTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEESCEEEEEEEEECCHHHHHH
T ss_pred HhCccccceEEEeehhhccCcccceeEEEEEecceeeccchhHHHHHHHHHhccCCCeEEEeeecceeeecccCHHHHHH
Confidence 999999999999999999876 8999999999999999999999999999999999999999999999999999999988
Q ss_pred hhhhhhccCCCCcchhHHHHHhcCCCCceEEeecCCccccCCeeEEEEeCCCCCcccccceeeeeEEEEeeccceeEEEE
Q 014247 235 SIDFWRNVYGIDMSAMMPLAKQCAFEEPSVETITGENVLTWPHVVKHVDCYTIQIHELESIATTFKFKSMMRAPLHGFAF 314 (428)
Q Consensus 235 ~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~~~~~~ls~p~~~~~~d~~~~~~~~l~~~~~~~~~~~~~~g~~~g~~~ 314 (428)
...+|..++|++++.+.... +..+.+..+.+..+++.|..+..+|+.+.+.+++. +...+++.+.++|++|||++
T Consensus 162 ~~~~~~~~~G~d~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~g~~hg~~~ 236 (328)
T d1g6q1_ 162 KLNYWQDVYGFDYSPFVPLV----LHEPIVDTVERNNVNTTSDKLIEFDLNTVKISDLA-FKSNFKLTAKRQDMINGIVT 236 (328)
T ss_dssp HHHHTTCBTTBCCTTHHHHH----TTSCEEECCCGGGBCBCCEEEEEEETTTCCGGGGS-EEEEEEEEBCSSCEEEEEEE
T ss_pred hccccccccccccchhhhhh----ccCcEEEEecCceeecCceeEEEecccccchhhcc-eeeeEEEEecCCcEEEEEEE
Confidence 88899999999999887765 45577778888899999999999999999888875 57889999999999999999
Q ss_pred EEEeeccCCCCCCCCCCCCCcccCCCCCCCCccccccccCCCCCcEEEecCCCCCCCceeeeEEeeCCccccCCCCEEEE
Q 014247 315 WFDVEFSTPAISPANNHIPPVVVGSSNNHPMDGCQKKKRANPNEALVLSTAPEDPPTHWQQTMIYFYDPIEVEQDQLIEG 394 (428)
Q Consensus 315 wf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSt~P~~~~thW~q~~~~l~~pi~v~~g~~i~~ 394 (428)
||+++|+++ .+..++.|||+|.++.|||+|++++|++|+.|++||+|+|
T Consensus 237 wFd~~l~~~-------------------------------~~~~~i~lST~P~~~~thW~Q~v~~l~~pi~v~~gd~i~~ 285 (328)
T d1g6q1_ 237 WFDIVFPAP-------------------------------KGKRPVEFSTGPHAPYTHWKQTIFYFPDDLDAETGDTIEG 285 (328)
T ss_dssp EEEEECCCC-------------------------------TTSCCCEEECSTTSCCCTTCEEEEEEEEEEECCTTCEEEE
T ss_pred EEEEEccCC-------------------------------CCCCceEEeCCCCCCCCceeeEEEEeCCceEeCCCCEEEE
Confidence 999999742 1234689999999999999999999999999999999999
Q ss_pred EEEEEeCCCCCeeEEEEEEEEECCeEeee
Q 014247 395 SVVLSQSKENARFMNIHLEYASGGRSFVK 423 (428)
Q Consensus 395 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~~ 423 (428)
+++|++++.|.|.|+|+++|..+.....+
T Consensus 286 ~~~~~~~~~~~r~~~v~~~~~~~~~~~~~ 314 (328)
T d1g6q1_ 286 ELVCSPNEKNNRDLNIKISYKFESNGIDG 314 (328)
T ss_dssp EEEEEEETTEEEEEEEEEEEEEECCSSTH
T ss_pred EEEEEECCCCCeeEEEEEEEEEEecCCCC
Confidence 99999999999999999998865544433
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=1.9e-54 Score=417.71 Aligned_cols=311 Identities=41% Similarity=0.727 Sum_probs=281.9
Q ss_pred hhccchhhhhhccChhhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeChHHHHHHHHHHHHCCC
Q 014247 80 SYAHVGIHEEMIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQANEVVKANNL 159 (428)
Q Consensus 80 ~y~~~~~~~~~~~d~~r~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s~~~~~a~~~~~~~~~ 159 (428)
+|+++++|+.|++|..|+.+|.++|.++....++++|||||||+|.+++++|++|+++|+|+|.++++..|+++++.+++
T Consensus 1 ~y~~~~~h~~Ml~D~~R~~~y~~ai~~~~~~~~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~~n~~ 80 (316)
T d1oria_ 1 SYAHFGIHEEMLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKL 80 (316)
T ss_dssp CHHHHHHHHHHHHCHHHHHHHHHHHHTCHHHHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHHHHHHHHTTC
T ss_pred CCccchHHHHHhCCHHHHHHHHHHHHhccccCCcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHHhhhhhHHHHhCC
Confidence 47788899999999999999999998876667899999999999999999999999999999999667888889999999
Q ss_pred CCcEEEEEcccccccCC-CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhh
Q 014247 160 TDKVIVLHGRVEDVEID-EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDF 238 (428)
Q Consensus 160 ~~~v~~~~~d~~~l~~~-~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~ 238 (428)
.++|+++++|+.+++.+ ++||+|+++++++.+.++..++.++.++.++|||||+++|..+++|+++++....+.....+
T Consensus 81 ~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~iiP~~~~~~~~~v~~~~~~~~~~~~ 160 (316)
T d1oria_ 81 DHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDRATLYVTAIEDRQYKDYKIHW 160 (316)
T ss_dssp TTTEEEEESCTTTCCCSSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEESCEEEEEEEEECCHHHHHHHTTT
T ss_pred ccccceEeccHHHcccccceeEEEeeeeeeeeeccHHHHHHHHHHHHhcCCCCeEEEeeeEEEEEEEecCHHHHhhhccc
Confidence 99999999999999876 89999999999999999999999999999999999999999999999999999888888889
Q ss_pred hhccCCCCcchhHHHHHhcCCCCceEEeecCCccccCCeeEEEEeCCCCCcccccceeeeeEEEEeeccceeEEEEEEEe
Q 014247 239 WRNVYGIDMSAMMPLAKQCAFEEPSVETITGENVLTWPHVVKHVDCYTIQIHELESIATTFKFKSMMRAPLHGFAFWFDV 318 (428)
Q Consensus 239 ~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~~~~~~ls~p~~~~~~d~~~~~~~~l~~~~~~~~~~~~~~g~~~g~~~wf~~ 318 (428)
|.+++|++++.+...... .+.+....+..+++.|+.+.++|+.+...+++. +...+++.+.++|.+|||++||++
T Consensus 161 ~~~~~g~d~~~~~~~~~~----~~~v~~~~~~~~ls~p~~~~~~d~~~~~~~~l~-~~~~~~~~~~~~g~~hg~~~wFd~ 235 (316)
T d1oria_ 161 WENVYGFDMSCIKDVAIK----EPLVDVVDPKQLVTNACLIKEVDIYTVKVEDLT-FTSPFCLQVKRNDYVHALVAYFNI 235 (316)
T ss_dssp TTCBTTBCCHHHHHHHHT----SCEEECCCGGGEEEEEEEEEEEETTTCCGGGGS-EEEEEEEEBCSSEEEEEEEEEEEE
T ss_pred ccccccccchhhhhhhcc----ccEEEEecCceEeeCCEEeEEEcCCCCcccCcc-EEEEEEEeecCCceEEEEEEEEEE
Confidence 999999999988876543 466777788899999999999999998888775 578899999999999999999999
Q ss_pred eccCCCCCCCCCCCCCcccCCCCCCCCccccccccCCCCCcEEEecCCCCCCCceeeeEEeeCCccccCCCCEEEEEEEE
Q 014247 319 EFSTPAISPANNHIPPVVVGSSNNHPMDGCQKKKRANPNEALVLSTAPEDPPTHWQQTMIYFYDPIEVEQDQLIEGSVVL 398 (428)
Q Consensus 319 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSt~P~~~~thW~q~~~~l~~pi~v~~g~~i~~~~~~ 398 (428)
+|++ +.+++.|||+|..+.|||+|++|+|++|+.|++||+|.|+|++
T Consensus 236 ~l~~---------------------------------~~~~v~lST~P~~~~thW~Q~v~~l~~p~~v~~g~~i~~~i~~ 282 (316)
T d1oria_ 236 EFTR---------------------------------CHKRTGFSTSPESPYTHWKQTVFYMEDYLTVKTGEEIFGTIGM 282 (316)
T ss_dssp ECTT---------------------------------SSSCCEEECSTTSCCCTTCEEEEEEEEEEEECTTCEEEEEEEE
T ss_pred EeeC---------------------------------CCCCeEEECCCCcCCCceecEEEEcCCceEcCCCCEEEEEEEE
Confidence 9963 2346899999998999999999999999999999999999999
Q ss_pred EeCCCCCeeEEEEEEEEECC----eEeeeecccC
Q 014247 399 SQSKENARFMNIHLEYASGG----RSFVKESVMR 428 (428)
Q Consensus 399 ~~~~~~~r~~~~~~~~~~~~----~~~~~~~~~~ 428 (428)
+++++++|+++|+++++.+| .+.-++|-||
T Consensus 283 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~y~~~ 316 (316)
T d1oria_ 283 RPNAKNNRDLDFTIDLDFKGQLCELSCSTDYRMR 316 (316)
T ss_dssp EECSSSTTCEEEEEEEEEECSSCEEEEEEEEEEC
T ss_pred EECCCCCceEEEEEEEEecCeeeccccceeeecC
Confidence 99999999999999999977 4444556665
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2e-53 Score=409.95 Aligned_cols=307 Identities=40% Similarity=0.751 Sum_probs=278.0
Q ss_pred HhhhccchhhhhhccChhhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeChHHHHHHHHHHHHC
Q 014247 78 FHSYAHVGIHEEMIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQANEVVKAN 157 (428)
Q Consensus 78 f~~y~~~~~~~~~~~d~~r~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s~~~~~a~~~~~~~ 157 (428)
|++|+.++.|+.|++|..|+++|.++|.+.....++++|||||||+|.+++.+|++|+++|+|+|.|+.+..|++.+..+
T Consensus 1 ~~~y~~~~~h~~ml~D~~r~~~y~~ai~~~~~~~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~a~~~~~~~ 80 (311)
T d2fyta1 1 FSSYGHYGIHEEMLKDKIRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLN 80 (311)
T ss_dssp CCGGGSHHHHHHHHTCHHHHHHHHHHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHT
T ss_pred CCCcccchHHHHHhCCHHHHHHHHHHHHhccccCCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHHHHHHHHHh
Confidence 57899999999999999999999999999888789999999999999999999999999999999994445677888889
Q ss_pred CCCCcEEEEEcccccccCC-CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhh
Q 014247 158 NLTDKVIVLHGRVEDVEID-EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESI 236 (428)
Q Consensus 158 ~~~~~v~~~~~d~~~l~~~-~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~ 236 (428)
++.+++.++++|+.++..+ ++||+|+++++++.+..+..++.++.++.++|+|||+++|+.+++|++++.....+.+..
T Consensus 81 ~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip~~~~~~~~~v~~~~~~~~~~ 160 (311)
T d2fyta1 81 KLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYPDICTISLVAVSDVNKHADRI 160 (311)
T ss_dssp TCTTTEEEEESCTTTSCCSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEESCEEEEEEEEECCHHHHHHHT
T ss_pred CCCccceEEEeeHHHhcCccccceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEeccccceEEEEecCHHHHHhhh
Confidence 9999999999999999876 899999999999999999989999999999999999999999999999999988888888
Q ss_pred hhhhccCCCCcchhHHHHHhcCCCCceEEeecCCccccCCeeEEEEeCCCCCcccccceeeeeEEEEeeccceeEEEEEE
Q 014247 237 DFWRNVYGIDMSAMMPLAKQCAFEEPSVETITGENVLTWPHVVKHVDCYTIQIHELESIATTFKFKSMMRAPLHGFAFWF 316 (428)
Q Consensus 237 ~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~~~~~~ls~p~~~~~~d~~~~~~~~l~~~~~~~~~~~~~~g~~~g~~~wf 316 (428)
.+|.+++|++++.+.+... ..+.+....+..+++.|+.+..+|+.+...+++. +...+.+.+.++|++|||++||
T Consensus 161 ~~~~~~~G~d~~~~~~~~~----~~~~~~~~~~~~~ls~p~~~~~~d~~~~~~~~~~-~~~~~~~~~~~~g~~~g~~~Wf 235 (311)
T d2fyta1 161 AFWDDVYGFKMSCMKKAVI----PEAVVEVLDPKTLISEPCGIKHIDCHTTSISDLE-FSSDFTLKITRTSMCTAIAGYF 235 (311)
T ss_dssp GGGGCBTTBCCGGGHHHHT----TBCEEECCCGGGBCBCCEEEEEEETTTCCGGGGS-EEEEEEEEBCSCEEEEEEEEEE
T ss_pred ccccccccccccchhhccc----cccEEEecChhheecCCEeEEEeccCcCcccccc-EEEEEEeeecCCcceEEEEEEE
Confidence 8999999999999876543 3566778888999999999999999998888775 5788999999999999999999
Q ss_pred EeeccCCCCCCCCCCCCCcccCCCCCCCCccccccccCCCCCcEEEecCCCCCCCceeeeEEeeCCccccCCCCEEEEEE
Q 014247 317 DVEFSTPAISPANNHIPPVVVGSSNNHPMDGCQKKKRANPNEALVLSTAPEDPPTHWQQTMIYFYDPIEVEQDQLIEGSV 396 (428)
Q Consensus 317 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lSt~P~~~~thW~q~~~~l~~pi~v~~g~~i~~~~ 396 (428)
+++|.+ +.++++.+||+|.++.|||+|++++|++|++|++||+|+|++
T Consensus 236 d~~f~~--------------------------------~~~~~~~lST~P~~~~thW~q~~~~l~~p~~v~~gd~l~~~~ 283 (311)
T d2fyta1 236 DIYFEK--------------------------------NCHNRVVFSTGPQSTKTHWKQTVFLLEKPFSVKAGEALKGKV 283 (311)
T ss_dssp EEEECT--------------------------------TCSSCEEEECSTTSCCCTTCEEEEEEEEEEEECTTCEEEEEE
T ss_pred EEEEEC--------------------------------CCCCceEEeCCCCcCCCccccEEEEeCCceEeCCCCEEEEEE
Confidence 999964 224579999999999999999999999999999999999999
Q ss_pred EEEeCCCCCeeEEEEEEEEECCeEe
Q 014247 397 VLSQSKENARFMNIHLEYASGGRSF 421 (428)
Q Consensus 397 ~~~~~~~~~r~~~~~~~~~~~~~~~ 421 (428)
++.+++.|.|.|+|++++....+.|
T Consensus 284 ~~~~~~~~~r~~~~~~~~~~~~~~~ 308 (311)
T d2fyta1 284 TVHKNKKDPRSLTVTLTLNNSTQTY 308 (311)
T ss_dssp EEEECSSCTTSEEEEEEETTEEEEE
T ss_pred EEEECCCCCEEEEEEEEEeCCcEEe
Confidence 9999999999999999976544433
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.83 E-value=2.3e-20 Score=171.63 Aligned_cols=162 Identities=15% Similarity=0.134 Sum_probs=125.7
Q ss_pred HHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC
Q 014247 98 ETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID 176 (428)
Q Consensus 98 ~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~ 176 (428)
....+.+.+.+...+|++|||||||+|.++..+++....+|+|||+| .|++.|++++...++.++++|+++|+.++..+
T Consensus 19 ~~~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~~~ 98 (245)
T d1nkva_ 19 EEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVAN 98 (245)
T ss_dssp HHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCS
T ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhcccc
Confidence 34556677888889999999999999999999988633499999999 99999999999999999999999999998667
Q ss_pred CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhhcc---CCCCcchhHHH
Q 014247 177 EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNV---YGIDMSAMMPL 253 (428)
Q Consensus 177 ~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~ 253 (428)
++||+|+|.. .+.+..++..+++++.++|||||++++........+ ........|... .......+...
T Consensus 99 ~~fD~v~~~~---~~~~~~d~~~~l~~~~r~LkPGG~l~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (245)
T d1nkva_ 99 EKCDVAACVG---ATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLP-----ATEEIAQACGVSSTSDFLTLPGLVGA 170 (245)
T ss_dssp SCEEEEEEES---CGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEETTCC-----SSHHHHHTTTCSCGGGSCCHHHHHHH
T ss_pred CceeEEEEEe---hhhccCCHHHHHHHHHHHcCcCcEEEEEeccccCCC-----ChHHHHHHhccCCCcccCCHHHHHHH
Confidence 9999999976 566777889999999999999999998754322111 111112222211 12345678888
Q ss_pred HHhcCCCCceEEee
Q 014247 254 AKQCAFEEPSVETI 267 (428)
Q Consensus 254 l~~~Gf~~~~~~~~ 267 (428)
+.++||+.......
T Consensus 171 ~~~aG~~~v~~~~~ 184 (245)
T d1nkva_ 171 FDDLGYDVVEMVLA 184 (245)
T ss_dssp HHTTTBCCCEEEEC
T ss_pred HHHcCCEEEEEEeC
Confidence 99999988765543
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.83 E-value=1.2e-20 Score=171.71 Aligned_cols=154 Identities=20% Similarity=0.261 Sum_probs=118.3
Q ss_pred HHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC-CceeE
Q 014247 104 IMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID-EEVDV 181 (428)
Q Consensus 104 i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~-~~~Dl 181 (428)
+.+.+...++.+|||||||+|.++..+++.|+ +|+|+|+| .|++.|++++...+.. +++++++|+++++++ ++||+
T Consensus 7 ll~~~~l~~~~rVLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~i~~A~~~~~~~~~~-~i~~~~~d~~~l~~~~~~fD~ 84 (231)
T d1vl5a_ 7 LMQIAALKGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGHQ-QVEYVQGDAEQMPFTDERFHI 84 (231)
T ss_dssp HHHHHTCCSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCC-CCCSCTTCEEE
T ss_pred HHHhcCCCCcCEEEEecccCcHHHHHHHHhCC-EEEEEECCHHHHhhhhhcccccccc-ccccccccccccccccccccc
Confidence 44556678899999999999999999999976 89999999 9999999999988875 599999999999875 89999
Q ss_pred EEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhh------hccCCCCcchhHHHHH
Q 014247 182 IISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFW------RNVYGIDMSAMMPLAK 255 (428)
Q Consensus 182 Vvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~l~ 255 (428)
|+|.. .++|..++..+++++.++|||||++++..... + ....+.....++ .....+..+.+..+++
T Consensus 85 v~~~~---~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 156 (231)
T d1vl5a_ 85 VTCRI---AAHHFPNPASFVSEAYRVLKKGGQLLLVDNSA---P--ENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLE 156 (231)
T ss_dssp EEEES---CGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEB---C--SSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHH
T ss_pred ccccc---cccccCCHHHHHHHHHHhcCCCcEEEEEeCCC---C--CCHHHHHHHHHHHhhcccCcccCCCHHHHHHHHH
Confidence 99976 67777889999999999999999998753221 1 111111111111 1223455678899999
Q ss_pred hcCCCCceEEee
Q 014247 256 QCAFEEPSVETI 267 (428)
Q Consensus 256 ~~Gf~~~~~~~~ 267 (428)
++||+...+..+
T Consensus 157 ~aGf~~~~~~~~ 168 (231)
T d1vl5a_ 157 EAGFELEELHCF 168 (231)
T ss_dssp HHTCEEEEEEEE
T ss_pred HCCCEEEEEEEe
Confidence 999987665543
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.82 E-value=2.1e-20 Score=170.67 Aligned_cols=159 Identities=15% Similarity=0.195 Sum_probs=121.4
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC-C
Q 014247 100 YRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID-E 177 (428)
Q Consensus 100 ~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~-~ 177 (428)
..+.+.+.+...+|.+|||||||+|.++..+++.++ +|+|||+| .|++.|++++..+++. ++.++++|+++++++ +
T Consensus 4 ~~~~l~~~~~~~~~~rILDiGcGtG~~~~~la~~~~-~v~gvD~S~~~l~~A~~~~~~~~~~-~~~~~~~d~~~~~~~~~ 81 (234)
T d1xxla_ 4 SLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGVE-NVRFQQGTAESLPFPDD 81 (234)
T ss_dssp HHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHHTCC-SEEEEECBTTBCCSCTT
T ss_pred HHHHHHHHhCCCCCCEEEEeCCcCcHHHHHHHHhCC-eEEEEeCChhhhhhhhhhhcccccc-ccccccccccccccccc
Confidence 345677777889999999999999999999999875 89999999 9999999999988885 499999999999876 8
Q ss_pred ceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCc---cchhhhhhhhhc--cCCCCcchhHH
Q 014247 178 EVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHP---DRYSESIDFWRN--VYGIDMSAMMP 252 (428)
Q Consensus 178 ~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~---~~~~~~~~~~~~--~~~~~~~~l~~ 252 (428)
+||+|+|.. .+++..++..+++++.++|||||++++..... + ..+ ..+.....++.. ...+....+..
T Consensus 82 ~fD~v~~~~---~l~~~~d~~~~l~~~~r~LkpgG~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (234)
T d1xxla_ 82 SFDIITCRY---AAHHFSDVRKAVREVARVLKQDGRFLLVDHYA---P-EDPVLDEFVNHLNRLRDPSHVRESSLSEWQA 154 (234)
T ss_dssp CEEEEEEES---CGGGCSCHHHHHHHHHHHEEEEEEEEEEEECB---C-SSHHHHHHHHHHHHHHCTTCCCCCBHHHHHH
T ss_pred ccceeeeec---eeecccCHHHHHHHHHHeeCCCcEEEEEEcCC---C-CCHHHHHHHHHHHhhCCCcccccCCHHHHHH
Confidence 999999965 67777889999999999999999988743111 0 111 011111112222 22234566888
Q ss_pred HHHhcCCCCceEEee
Q 014247 253 LAKQCAFEEPSVETI 267 (428)
Q Consensus 253 ~l~~~Gf~~~~~~~~ 267 (428)
++.++||....+...
T Consensus 155 ~~~~~gf~~~~~~~~ 169 (234)
T d1xxla_ 155 MFSANQLAYQDIQKW 169 (234)
T ss_dssp HHHHTTEEEEEEEEE
T ss_pred HHHHCCCceeEEEEe
Confidence 899999977665543
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.82 E-value=1.2e-19 Score=170.31 Aligned_cols=162 Identities=15% Similarity=0.125 Sum_probs=122.6
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC-
Q 014247 100 YRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID- 176 (428)
Q Consensus 100 ~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~- 176 (428)
+.+.+.......++.+|||||||+|.++..+++. |+ +|+|+|+| .+++.|+++....++.++++++++|+.+++++
T Consensus 55 ~~~~l~~~~~l~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~ 133 (282)
T d2o57a1 55 LASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGV-SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCED 133 (282)
T ss_dssp HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCT
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCCcHHHhhhhccCCc-EEEEEeccchhhhhhhcccccccccccccccccccccccccc
Confidence 3444555556788999999999999999999986 55 89999999 99999999999999999999999999999876
Q ss_pred CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhhccCCCCcchhHHHHHh
Q 014247 177 EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAMMPLAKQ 256 (428)
Q Consensus 177 ~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 256 (428)
++||+|++.. .++|..++..+++++.++|||||++++...... ..............+......+...+..++++
T Consensus 134 ~sfD~V~~~~---~l~h~~d~~~~l~~~~~~LkpgG~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~ 208 (282)
T d2o57a1 134 NSYDFIWSQD---AFLHSPDKLKVFQECARVLKPRGVMAITDPMKE--DGIDKSSIQPILDRIKLHDMGSLGLYRSLAKE 208 (282)
T ss_dssp TCEEEEEEES---CGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEEC--TTCCGGGGHHHHHHHTCSSCCCHHHHHHHHHH
T ss_pred cccchhhccc---hhhhccCHHHHHHHHHHhcCCCcEEEEEEeecC--CCCchhHHHHHHHHhccCCCCCHHHHHHHHHH
Confidence 8999999865 566777899999999999999999987643211 11111111111111111222356778889999
Q ss_pred cCCCCceEEee
Q 014247 257 CAFEEPSVETI 267 (428)
Q Consensus 257 ~Gf~~~~~~~~ 267 (428)
+||+...+...
T Consensus 209 ~Gf~~i~~~d~ 219 (282)
T d2o57a1 209 CGLVTLRTFSR 219 (282)
T ss_dssp TTEEEEEEEEC
T ss_pred cCCceEEEEEC
Confidence 99987766544
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.78 E-value=9.3e-19 Score=160.95 Aligned_cols=116 Identities=26% Similarity=0.403 Sum_probs=96.7
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCce
Q 014247 101 RAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEV 179 (428)
Q Consensus 101 ~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~ 179 (428)
...+.+.....++++|||||||+|.++..+++.|+ +|+|||+| .|++.|++++..+++ +++++++|+++++++++|
T Consensus 30 ~~~~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~~~-~v~gvD~s~~mi~~a~~~~~~~~~--~i~~~~~d~~~l~~~~~f 106 (251)
T d1wzna1 30 VEEIFKEDAKREVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLEIAFKNEF 106 (251)
T ss_dssp HHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC--CCEEEESCGGGCCCCSCE
T ss_pred HHHHHHHhcCCCCCEEEEeCCCCCccchhhcccce-EEEEEeeccccccccccccccccc--cchheehhhhhccccccc
Confidence 33344444556778999999999999999999987 89999999 999999999988776 589999999999998999
Q ss_pred eEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCC
Q 014247 180 DVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYA 219 (428)
Q Consensus 180 DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 219 (428)
|+|+|......+....++..+|++++++|||||++++...
T Consensus 107 D~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~~ 146 (251)
T d1wzna1 107 DAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFP 146 (251)
T ss_dssp EEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred chHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEec
Confidence 9999954222333456788999999999999999998643
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.75 E-value=2.8e-18 Score=157.50 Aligned_cols=104 Identities=21% Similarity=0.297 Sum_probs=90.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEEec-ch
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEW-MG 188 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~~-~~ 188 (428)
.++++|||||||+|.++..+++.|. +|+|||+| .|++.|++++...++ +++++++|+.+++++++||+|+|.. ..
T Consensus 36 ~~~~~vLDiGCG~G~~~~~l~~~g~-~v~GvD~S~~ml~~A~~~~~~~~~--~v~~~~~d~~~~~~~~~fD~i~~~~~~~ 112 (246)
T d1y8ca_ 36 LVFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQGL--KPRLACQDISNLNINRKFDLITCCLDST 112 (246)
T ss_dssp CCTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHHHHHHTTC--CCEEECCCGGGCCCSCCEEEEEECTTGG
T ss_pred CCCCeEEEEeCcCCHHHHHHHHhCC-ccEeeccchhhhhhccccccccCc--cceeeccchhhhcccccccccceeeeee
Confidence 5568999999999999999999987 89999999 999999999888776 4899999999998889999999842 22
Q ss_pred hhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 189 YMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 189 ~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
+.+.+..++..++++++++|+|||.+++.
T Consensus 113 ~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 141 (246)
T d1y8ca_ 113 NYIIDSDDLKKYFKAVSNHLKEGGVFIFD 141 (246)
T ss_dssp GGCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred eccCCHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 23445667899999999999999999864
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.74 E-value=2.6e-18 Score=155.65 Aligned_cols=147 Identities=14% Similarity=0.174 Sum_probs=110.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEEecchh
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWMGY 189 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~~~~~ 189 (428)
.++.+|||||||+|.++..+++.|. +|+|||+| .+++.|+++. .+++.++++++.+++++++||+|++..
T Consensus 19 ~~~~~VLDiGcG~G~~~~~l~~~g~-~v~giD~s~~~i~~a~~~~-----~~~~~~~~~~~~~~~~~~~fD~I~~~~--- 89 (225)
T d2p7ia1 19 FRPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRL-----KDGITYIHSRFEDAQLPRRYDNIVLTH--- 89 (225)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHS-----CSCEEEEESCGGGCCCSSCEEEEEEES---
T ss_pred CCCCcEEEEeCCCcHHHHHHHHcCC-eEEEEeCcHHHhhhhhccc-----ccccccccccccccccccccccccccc---
Confidence 5677899999999999999999876 79999999 9999998763 235999999999998889999999865
Q ss_pred hhcchhhHHHHHHHHh-cccccCeEEEccCCeeeEe---------ecCCccchhhhhhhhhccCCCCcchhHHHHHhcCC
Q 014247 190 MLLYESMLGSVITARD-RWLKRGGLILPSYATLYMA---------PVTHPDRYSESIDFWRNVYGIDMSAMMPLAKQCAF 259 (428)
Q Consensus 190 ~l~~~~~~~~~l~~~~-~~LkpgG~lv~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf 259 (428)
+++|..++..++.++. ++|+|||.+++..++.... .......+......+.+...++...+.+++.++||
T Consensus 90 vleh~~d~~~~l~~i~~~~Lk~gG~l~i~~pn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~l~~~Gf 169 (225)
T d2p7ia1 90 VLEHIDDPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGL 169 (225)
T ss_dssp CGGGCSSHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTC
T ss_pred eeEecCCHHHHHHHHHHHhcCCCceEEEEeCCcccHHHHHHHHhhhhhhhhhcCccccceeeeeccCHHHHHHHHHHCCC
Confidence 7778888999999997 8999999999865432110 00001111111112223445677889999999999
Q ss_pred CCceEEe
Q 014247 260 EEPSVET 266 (428)
Q Consensus 260 ~~~~~~~ 266 (428)
+....+.
T Consensus 170 ~i~~~~~ 176 (225)
T d2p7ia1 170 QVTYRSG 176 (225)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 8766553
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.74 E-value=1.8e-18 Score=154.62 Aligned_cols=137 Identities=22% Similarity=0.298 Sum_probs=101.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC-CceeEEEEecch
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID-EEVDVIISEWMG 188 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~-~~~DlVvs~~~~ 188 (428)
.++.+|||||||+|.++..++ +++|||+| .|++.|+++ ++.++++|+++++.+ ++||+|+|..
T Consensus 35 ~~~~~vLDiGcG~G~~~~~~~-----~~~giD~s~~~~~~a~~~--------~~~~~~~d~~~l~~~~~~fD~I~~~~-- 99 (208)
T d1vlma_ 35 LPEGRGVEIGVGTGRFAVPLK-----IKIGVEPSERMAEIARKR--------GVFVLKGTAENLPLKDESFDFALMVT-- 99 (208)
T ss_dssp CCSSCEEEETCTTSTTHHHHT-----CCEEEESCHHHHHHHHHT--------TCEEEECBTTBCCSCTTCEEEEEEES--
T ss_pred CCCCeEEEECCCCcccccccc-----eEEEEeCChhhccccccc--------cccccccccccccccccccccccccc--
Confidence 456689999999999887663 57899999 999888763 489999999999876 8999999976
Q ss_pred hhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhh---hhhhhhccCCCCcchhHHHHHhcCCCCceEE
Q 014247 189 YMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSE---SIDFWRNVYGIDMSAMMPLAKQCAFEEPSVE 265 (428)
Q Consensus 189 ~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~ 265 (428)
++++..++..+++++.++|+|||.+++......... ...+.. ...+......++..++..+++++||+.+.+.
T Consensus 100 -~l~h~~d~~~~l~~~~~~L~pgG~l~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~~Gf~~i~v~ 175 (208)
T d1vlma_ 100 -TICFVDDPERALKEAYRILKKGGYLIVGIVDRESFL---GREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVV 175 (208)
T ss_dssp -CGGGSSCHHHHHHHHHHHEEEEEEEEEEEECSSSHH---HHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred -ccccccccccchhhhhhcCCCCceEEEEecCCcchh---HHhhhhccccccccccccCCCHHHHHHHHHHcCCeEEEEE
Confidence 677778899999999999999999987643221000 000000 0111223445678889999999999876655
Q ss_pred e
Q 014247 266 T 266 (428)
Q Consensus 266 ~ 266 (428)
.
T Consensus 176 ~ 176 (208)
T d1vlma_ 176 Q 176 (208)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.74 E-value=8.3e-18 Score=157.04 Aligned_cols=170 Identities=15% Similarity=0.138 Sum_probs=124.4
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCC
Q 014247 100 YRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDE 177 (428)
Q Consensus 100 ~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~ 177 (428)
..+.+.+.+...+|.+|||||||+|.++..+++. |+ +|+|||+| ++++.|++++++.++..++.+...|..+++ +
T Consensus 40 k~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g~-~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~~--~ 116 (280)
T d2fk8a1 40 KVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA--E 116 (280)
T ss_dssp HHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC--C
T ss_pred HHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhCce-eEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhhc--c
Confidence 3456777778899999999999999999999987 66 99999999 999999999999999888999999887764 7
Q ss_pred ceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEee--cCCccc----hhhhhhh-----hhccCCCC
Q 014247 178 EVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAP--VTHPDR----YSESIDF-----WRNVYGID 246 (428)
Q Consensus 178 ~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~--~~~~~~----~~~~~~~-----~~~~~~~~ 246 (428)
+||.|++..+...+. ....+.+++++.++|||||++++......... ...... ......| +...+-.+
T Consensus 117 ~fD~i~si~~~eh~~-~~~~~~~f~~i~~~LkpgG~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~dfI~kyifPgg~lPS 195 (280)
T d2fk8a1 117 PVDRIVSIEAFEHFG-HENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPS 195 (280)
T ss_dssp CCSEEEEESCGGGTC-GGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCC
T ss_pred chhhhhHhhHHHHhh-hhhHHHHHHHHHhccCCCceEEEEEeeccCcchhhhcccccccccccccchhhhhccCCCcccc
Confidence 899999976432222 24578999999999999999998653221100 000000 0000111 22223345
Q ss_pred cchhHHHHHhcCCCCceEEeecCCccc
Q 014247 247 MSAMMPLAKQCAFEEPSVETITGENVL 273 (428)
Q Consensus 247 ~~~l~~~l~~~Gf~~~~~~~~~~~~~l 273 (428)
.+.+...++++||+...++.+..++..
T Consensus 196 ~~~l~~~~e~aGf~v~~~~~~~~hYa~ 222 (280)
T d2fk8a1 196 TEMMVEHGEKAGFTVPEPLSLRPHYIK 222 (280)
T ss_dssp HHHHHHHHHHTTCBCCCCEECHHHHHH
T ss_pred hHhhhhhHHhhccccceeeecccCHHH
Confidence 678888899999999988887655433
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.73 E-value=1.5e-17 Score=155.21 Aligned_cols=170 Identities=16% Similarity=0.150 Sum_probs=125.4
Q ss_pred HHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC
Q 014247 98 ETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI 175 (428)
Q Consensus 98 ~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~ 175 (428)
....+.+.+.+...+|.+|||||||.|.+++.+|+. |+ +|+||++| .+++.|++++.+.++.+++++..+|..+++
T Consensus 48 ~~k~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~g~-~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~- 125 (285)
T d1kpga_ 48 IAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD- 125 (285)
T ss_dssp HHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC-
T ss_pred HHHHHHHHHHcCCCCCCEEEEecCcchHHHHHHHhcCCc-ceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhccc-
Confidence 344567777888899999999999999999988876 76 99999999 999999999999999999999999998875
Q ss_pred CCceeEEEEecchhhhcch--hhHHHHHHHHhcccccCeEEEccCCeeeEeec-CC-----ccchhhhhh-----hhhcc
Q 014247 176 DEEVDVIISEWMGYMLLYE--SMLGSVITARDRWLKRGGLILPSYATLYMAPV-TH-----PDRYSESID-----FWRNV 242 (428)
Q Consensus 176 ~~~~DlVvs~~~~~~l~~~--~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~-~~-----~~~~~~~~~-----~~~~~ 242 (428)
++||.|+|-.+ +.|. .....+++++.++|||||++++...+....+. .. ......... .|...
T Consensus 126 -~~fD~i~si~~---~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~fi~kyiFpgg 201 (285)
T d1kpga_ 126 -EPVDRIVSIGA---FEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGG 201 (285)
T ss_dssp -CCCSEEEEESC---GGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTC
T ss_pred -ccccceeeehh---hhhcCchhHHHHHHHHHhhcCCCCcEEEEEEeccCchhhccccCCcchhhhchhhHHHHHhccCC
Confidence 78999999663 3333 34688999999999999999976643211000 00 000001111 12222
Q ss_pred CCCCcchhHHHHHhcCCCCceEEeecCCccc
Q 014247 243 YGIDMSAMMPLAKQCAFEEPSVETITGENVL 273 (428)
Q Consensus 243 ~~~~~~~l~~~l~~~Gf~~~~~~~~~~~~~l 273 (428)
.-..++.+..+++++||+...++.+..++..
T Consensus 202 ~lPsl~~~~~~~e~agf~v~~~~~~~~hYar 232 (285)
T d1kpga_ 202 RLPSIPMVQECASANGFTVTRVQSLQPHYAK 232 (285)
T ss_dssp CCCCHHHHHHHHHTTTCEEEEEEECHHHHHH
T ss_pred CCCChhhHHHHHHHhchhhcccccchhhHHH
Confidence 2335677888889999999888877654433
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.73 E-value=1.3e-17 Score=150.26 Aligned_cols=114 Identities=25% Similarity=0.321 Sum_probs=94.4
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC
Q 014247 97 TETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI 175 (428)
Q Consensus 97 ~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~ 175 (428)
...+...+.+.+ .++.+|||||||+|.++..+++.+. +|+|+|+| .|++.|++++...+. .+.++++|+.++++
T Consensus 24 ~~~~~~~~~~~l--~~~~~ILDiGcG~G~~~~~la~~~~-~v~giD~S~~~i~~ak~~~~~~~~--~~~~~~~d~~~l~~ 98 (226)
T d1ve3a1 24 IETLEPLLMKYM--KKRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRES--NVEFIVGDARKLSF 98 (226)
T ss_dssp HHHHHHHHHHSC--CSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC--CCEEEECCTTSCCS
T ss_pred HHHHHHHHHHhc--CCCCEEEEECCCcchhhhhHhhhhc-ccccccccccchhhhhhhhccccc--cccccccccccccc
Confidence 334455565655 5678999999999999999999876 89999999 999999998887764 47889999999887
Q ss_pred C-CceeEEEEecchhhhcch--hhHHHHHHHHhcccccCeEEEccC
Q 014247 176 D-EEVDVIISEWMGYMLLYE--SMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 176 ~-~~~DlVvs~~~~~~l~~~--~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
+ ++||+|+|.. ++.+. .++..+++++.++|||||++++..
T Consensus 99 ~~~~fD~I~~~~---~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~ 141 (226)
T d1ve3a1 99 EDKTFDYVIFID---SIVHFEPLELNQVFKEVRRVLKPSGKFIMYF 141 (226)
T ss_dssp CTTCEEEEEEES---CGGGCCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCcCceEEEEec---chhhCChhHHHHHHHHHHHHcCcCcEEEEEE
Confidence 6 8999999976 44443 468889999999999999998753
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.72 E-value=5.6e-17 Score=151.82 Aligned_cols=170 Identities=16% Similarity=0.137 Sum_probs=125.4
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC
Q 014247 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID 176 (428)
Q Consensus 99 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~ 176 (428)
...+.+.+.+...+|.+|||||||.|.++..+|+. |+ +|+||++| ++++.|++++...++.+++.+...|.... +
T Consensus 48 ~k~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g~-~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~--~ 124 (291)
T d1kpia_ 48 AKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDV-NVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF--D 124 (291)
T ss_dssp HHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC--C
T ss_pred HHHHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhcCc-ceeeccchHHHHHHHHHHHHhhccchhhhhhhhccccc--c
Confidence 44566777788899999999999999999998875 76 99999999 99999999999999999999999987653 4
Q ss_pred CceeEEEEecchhhhcch---------hhHHHHHHHHhcccccCeEEEccCCeeeEee------cCCccchhhhhhh---
Q 014247 177 EEVDVIISEWMGYMLLYE---------SMLGSVITARDRWLKRGGLILPSYATLYMAP------VTHPDRYSESIDF--- 238 (428)
Q Consensus 177 ~~~DlVvs~~~~~~l~~~---------~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~------~~~~~~~~~~~~~--- 238 (428)
++||.|+|.. ++.|. ...+.+++++.++|||||++++...+..... ...+..+.....|
T Consensus 125 ~~fD~i~sie---~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~~~~~~~~~~~~~~p~~~~~~~~fi~k 201 (291)
T d1kpia_ 125 EPVDRIVSLG---AFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILT 201 (291)
T ss_dssp CCCSEEEEES---CGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHH
T ss_pred cccceEeech---hHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEeccCcchhhhccCCCchhhcccchHHHH
Confidence 8899999965 33333 3478999999999999999998754321100 0001111111122
Q ss_pred --hhccCCCCcchhHHHHHhcCCCCceEEeecCCcccc
Q 014247 239 --WRNVYGIDMSAMMPLAKQCAFEEPSVETITGENVLT 274 (428)
Q Consensus 239 --~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~~~~~~ls 274 (428)
|....-.+++.+...++++||+...++.+..++..|
T Consensus 202 yiFpgg~lps~~~~~~~~e~~gl~v~~~~~~~~hYa~T 239 (291)
T d1kpia_ 202 EIFPGGRLPRISQVDYYSSNAGWKVERYHRIGANYVPT 239 (291)
T ss_dssp HTCTTCCCCCHHHHHHHHHHHTCEEEEEEECGGGHHHH
T ss_pred HhcCCCCCCCHHHHHhhhcccccccceeeeccccHHHH
Confidence 222233356778888899999988888877665444
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.71 E-value=4.5e-17 Score=147.36 Aligned_cols=106 Identities=18% Similarity=0.248 Sum_probs=89.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc---CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEEec
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQA---GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEW 186 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~---g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~~ 186 (428)
.++.+|||||||+|.++..+++. +..+|+|+|+| .|++.|++++...+...++.+..+|+.+++. ..+|+|++..
T Consensus 38 ~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~-~~~d~i~~~~ 116 (225)
T d1im8a_ 38 TADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI-KNASMVILNF 116 (225)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCC-CSEEEEEEES
T ss_pred CCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhcccc-ccceeeEEee
Confidence 67889999999999999999974 23399999999 9999999999888887889999999887765 5789999876
Q ss_pred chhhhcchhhHHHHHHHHhcccccCeEEEccC
Q 014247 187 MGYMLLYESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 187 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
+.+.+ +..++..++++++++|||||.+++..
T Consensus 117 ~l~~~-~~~d~~~~l~~i~~~LkpgG~li~~~ 147 (225)
T d1im8a_ 117 TLQFL-PPEDRIALLTKIYEGLNPNGVLVLSE 147 (225)
T ss_dssp CGGGS-CGGGHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ecccc-ChhhHHHHHHHHHHhCCCCceeeccc
Confidence 33332 34578899999999999999999754
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=1.5e-17 Score=150.18 Aligned_cols=145 Identities=15% Similarity=0.143 Sum_probs=108.3
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC-CceeEEEEec
Q 014247 109 SFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID-EEVDVIISEW 186 (428)
Q Consensus 109 ~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~-~~~DlVvs~~ 186 (428)
...++.+|||||||+|.++..+++.++.+|+|||+| .|++.|++++...+.. +++|+++|+++++++ ++||+|++..
T Consensus 57 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~~-~~~f~~~d~~~~~~~~~~fD~I~~~~ 135 (222)
T d2ex4a1 57 NKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKR-VRNYFCCGLQDFTPEPDSYDVIWIQW 135 (222)
T ss_dssp -CCCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGG-EEEEEECCGGGCCCCSSCEEEEEEES
T ss_pred CCCCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhcccccccccccc-cccccccccccccccccccccccccc
Confidence 345678999999999999998877667799999999 9999999988776654 589999999998865 8999999976
Q ss_pred chhhhcchh--hHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhhccCCCCcchhHHHHHhcCCCCceE
Q 014247 187 MGYMLLYES--MLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAMMPLAKQCAFEEPSV 264 (428)
Q Consensus 187 ~~~~l~~~~--~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~ 264 (428)
++++.. ++..+++++.++|+|||.+++..... .....+.. ....+..+...+.++++++||+.+..
T Consensus 136 ---~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~-----~~~~~~~~----~~~~~~~~~~~~~~l~~~aGf~ii~~ 203 (222)
T d2ex4a1 136 ---VIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMA-----QEGVILDD----VDSSVCRDLDVVRRIICSAGLSLLAE 203 (222)
T ss_dssp ---CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEB-----SSSEEEET----TTTEEEEBHHHHHHHHHHTTCCEEEE
T ss_pred ---ccccchhhhhhhHHHHHHHhcCCcceEEEEEccc-----cccccccc----CCceeeCCHHHHHHHHHHcCCEEEEE
Confidence 444443 35689999999999999998754211 11111110 01112235678899999999987665
Q ss_pred Ee
Q 014247 265 ET 266 (428)
Q Consensus 265 ~~ 266 (428)
+.
T Consensus 204 ~~ 205 (222)
T d2ex4a1 204 ER 205 (222)
T ss_dssp EE
T ss_pred EE
Confidence 53
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.70 E-value=1.7e-17 Score=151.45 Aligned_cols=98 Identities=26% Similarity=0.353 Sum_probs=83.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC-CceeEEEEecch
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID-EEVDVIISEWMG 188 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~-~~~DlVvs~~~~ 188 (428)
.++.+|||+|||+|.++..+++.|+ +|+|+|+| .|++.|+++. . ..++.+|+++++++ ++||+|+|. +
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~l~~a~~~~----~---~~~~~~~~~~l~~~~~~fD~ii~~--~ 110 (246)
T d2avna1 41 KNPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEVAREKG----V---KNVVEAKAEDLPFPSGAFEAVLAL--G 110 (246)
T ss_dssp CSCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHHT----C---SCEEECCTTSCCSCTTCEEEEEEC--S
T ss_pred CCCCEEEEECCCCchhcccccccce-EEEEeeccccccccccccc----c---cccccccccccccccccccceeee--c
Confidence 4678999999999999999999987 89999999 9999887752 2 23678999999886 899999983 3
Q ss_pred hhhcchhhHHHHHHHHhcccccCeEEEccC
Q 014247 189 YMLLYESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 189 ~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
.+++|..++..+++++.++|||||.++++.
T Consensus 111 ~~~~~~~d~~~~l~~i~r~Lk~gG~~ii~~ 140 (246)
T d2avna1 111 DVLSYVENKDKAFSEIRRVLVPDGLLIATV 140 (246)
T ss_dssp SHHHHCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred chhhhhhhHHHHHHHHHhhcCcCcEEEEEE
Confidence 467777889999999999999999999764
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.69 E-value=8.4e-17 Score=141.25 Aligned_cols=112 Identities=26% Similarity=0.376 Sum_probs=96.4
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC-
Q 014247 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID- 176 (428)
Q Consensus 99 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~- 176 (428)
..+..+...+...++.+|||+|||+|.+++.+|+.+ .+|+|+|++ .+++.|+++++.+++.++++++++|+.+...+
T Consensus 20 eir~~il~~l~~~~g~~VLDiGcGsG~~s~~lA~~~-~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~ 98 (186)
T d1l3ia_ 20 EVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKI 98 (186)
T ss_dssp HHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTS
T ss_pred HHHHHHHHhcCCCCCCEEEEEECCeEcccccccccc-eEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhccccc
Confidence 455666777788999999999999999999999874 599999999 99999999999999988999999999887655
Q ss_pred CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 177 EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 177 ~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
..||+|++.. .......+++.+.+.|||||++++.
T Consensus 99 ~~~D~v~~~~------~~~~~~~~~~~~~~~LkpgG~lvi~ 133 (186)
T d1l3ia_ 99 PDIDIAVVGG------SGGELQEILRIIKDKLKPGGRIIVT 133 (186)
T ss_dssp CCEEEEEESC------CTTCHHHHHHHHHHTEEEEEEEEEE
T ss_pred CCcCEEEEeC------ccccchHHHHHHHHHhCcCCEEEEE
Confidence 8999999854 1233678899999999999998853
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.69 E-value=1e-16 Score=149.96 Aligned_cols=117 Identities=19% Similarity=0.339 Sum_probs=97.8
Q ss_pred HHHHHHHHhcc-CCCCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccc
Q 014247 98 ETYRAAIMQNQ-SFIEGKVVVDVGCGTGILSIFCAQA-G-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDV 173 (428)
Q Consensus 98 ~~~~~~i~~~~-~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l 173 (428)
+.|.+.+...+ ...++.+|||||||+|.++..+++. + ..+|+|+|+| .+++.|+++....+. +++|+++|+.++
T Consensus 12 ~d~l~~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~--~~~f~~~d~~~~ 89 (281)
T d2gh1a1 12 DDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY--DSEFLEGDATEI 89 (281)
T ss_dssp HHHHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSS--EEEEEESCTTTC
T ss_pred HHHHHHHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccc--cccccccccccc
Confidence 34555555543 4467789999999999999999885 2 2489999999 999999999887665 599999999998
Q ss_pred cCCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCC
Q 014247 174 EIDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYA 219 (428)
Q Consensus 174 ~~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 219 (428)
+++++||+|+|.. ++++..++..+++++.++|||||.+++..+
T Consensus 90 ~~~~~fD~v~~~~---~l~~~~d~~~~l~~~~~~LkpgG~lii~~~ 132 (281)
T d2gh1a1 90 ELNDKYDIAICHA---FLLHMTTPETMLQKMIHSVKKGGKIICFEP 132 (281)
T ss_dssp CCSSCEEEEEEES---CGGGCSSHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred cccCCceEEEEeh---hhhcCCCHHHHHHHHHHHcCcCcEEEEEEC
Confidence 8888999999976 677777899999999999999999987654
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.68 E-value=1.7e-16 Score=146.18 Aligned_cols=162 Identities=19% Similarity=0.209 Sum_probs=114.7
Q ss_pred HHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEeChHHHHHHHHHHHHCCCCCcEEEEEcccccccCCCcee
Q 014247 102 AAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAG-AKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVD 180 (428)
Q Consensus 102 ~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g-~~~V~giD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~D 180 (428)
+.+...+...+.++|||||||+|.++..++++. ..+++++|++++++.+++++...++.++++++.+|+.+. .+.+||
T Consensus 70 ~~~~~~~d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~-~~~~~D 148 (253)
T d1tw3a2 70 DAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEP-LPRKAD 148 (253)
T ss_dssp HHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSC-CSSCEE
T ss_pred HHHHhhcCCccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccCHHHHHHHHHHHHHhhcccchhhccccchhh-cccchh
Confidence 345555566677899999999999999999873 348999998888999999999999999999999998763 346899
Q ss_pred EEEEecchhhhcchh--hHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhh-hhhhhhccCC--CCcchhHHHHH
Q 014247 181 VIISEWMGYMLLYES--MLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSE-SIDFWRNVYG--IDMSAMMPLAK 255 (428)
Q Consensus 181 lVvs~~~~~~l~~~~--~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~l~~~l~ 255 (428)
+|++.. ++++.. +...+|+++++.|||||++++....... .-........ ....+....+ .+.+++..+++
T Consensus 149 ~v~~~~---vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~~~~-~~~~~~~~~~~dl~~~~~~~g~~rt~~e~~~ll~ 224 (253)
T d1tw3a2 149 AIILSF---VLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLH-ENSFNEQFTELDLRMLVFLGGALRTREKWDGLAA 224 (253)
T ss_dssp EEEEES---CGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCG-GGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHH
T ss_pred heeecc---ccccCCchhhHHHHHHHHHhcCCCcEEEEEeccCCC-CCcchhHHHHhhHHHHhhCCCcCCCHHHHHHHHH
Confidence 999876 444443 3568899999999999999875432110 0000000000 0111111112 35678999999
Q ss_pred hcCCCCceEEeec
Q 014247 256 QCAFEEPSVETIT 268 (428)
Q Consensus 256 ~~Gf~~~~~~~~~ 268 (428)
++||+..++..++
T Consensus 225 ~AGf~~~~v~~~~ 237 (253)
T d1tw3a2 225 SAGLVVEEVRQLP 237 (253)
T ss_dssp HTTEEEEEEEEEE
T ss_pred HCCCeEEEEEECC
Confidence 9999987766553
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.68 E-value=1.6e-16 Score=146.22 Aligned_cols=108 Identities=24% Similarity=0.290 Sum_probs=92.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC--CCceeEEEEecc
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI--DEEVDVIISEWM 187 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~--~~~~DlVvs~~~ 187 (428)
.++++|||||||+|..+..+++.|.++|+|||+| .|++.|+++....+...++.+.++|+...++ .++||+|+|...
T Consensus 23 ~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~~ 102 (252)
T d1ri5a_ 23 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFS 102 (252)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESC
T ss_pred CCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEcce
Confidence 6789999999999999999999888899999999 9999999998888777789999999976654 478999999763
Q ss_pred -hhhhcchhhHHHHHHHHhcccccCeEEEccC
Q 014247 188 -GYMLLYESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 188 -~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
.+++..+.++..+++++.++|||||+++++.
T Consensus 103 l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~ 134 (252)
T d1ri5a_ 103 FHYAFSTSESLDIAQRNIARHLRPGGYFIMTV 134 (252)
T ss_dssp GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred eeecCCCHHHHHHHHHHHhceeCCCCEEEEEe
Confidence 3333445678899999999999999998753
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.67 E-value=2.7e-16 Score=139.25 Aligned_cols=104 Identities=24% Similarity=0.315 Sum_probs=89.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEEecchh
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWMGY 189 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~~~~~ 189 (428)
.++.+|||||||+|..+..+++.|+ +|+|+|+| .+++.|++++...++. ++++...|+.++..+++||+|++..+.+
T Consensus 29 ~~~grvLDiGcG~G~~~~~la~~g~-~v~gvD~s~~~l~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~fD~I~~~~~~~ 106 (198)
T d2i6ga1 29 VAPGRTLDLGCGNGRNSLYLAANGY-DVTAWDKNPASMANLERIKAAEGLD-NLQTDLVDLNTLTFDGEYDFILSTVVMM 106 (198)
T ss_dssp SCSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCT-TEEEEECCTTTCCCCCCEEEEEEESCGG
T ss_pred CCCCcEEEECCCCCHHHHHHHHHhh-hhccccCcHHHHHHHHHHhhhcccc-chhhhheecccccccccccEEEEeeeee
Confidence 4556999999999999999999988 89999999 9999999999988886 4999999999988889999999976433
Q ss_pred hhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 190 MLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 190 ~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
.+ .......+++++.++|+|||.+++.
T Consensus 107 ~~-~~~~~~~~l~~~~~~L~pgG~~~~~ 133 (198)
T d2i6ga1 107 FL-EAQTIPGLIANMQRCTKPGGYNLIV 133 (198)
T ss_dssp GS-CTTHHHHHHHHHHHTEEEEEEEEEE
T ss_pred cC-CHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 33 2345788999999999999998864
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.67 E-value=2.1e-16 Score=145.60 Aligned_cols=149 Identities=9% Similarity=0.050 Sum_probs=107.9
Q ss_pred HHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC-Ccee
Q 014247 103 AIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID-EEVD 180 (428)
Q Consensus 103 ~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~-~~~D 180 (428)
.+.+.+...++.+|||+|||+|.++..++..++.+|++||+| .|++.|+++.... .+++++++|+.+++++ ++||
T Consensus 84 ~fl~~l~~~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~---~~~~~~~~d~~~~~~~~~~fD 160 (254)
T d1xtpa_ 84 NFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM---PVGKFILASMETATLPPNTYD 160 (254)
T ss_dssp HHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS---SEEEEEESCGGGCCCCSSCEE
T ss_pred HHHhhCCCCCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhcccccc---ccceeEEccccccccCCCccc
Confidence 344455556788999999999999998876656699999999 9999998875432 3589999999999875 8899
Q ss_pred EEEEecchhhhcchh--hHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhhccCCCCcchhHHHHHhcC
Q 014247 181 VIISEWMGYMLLYES--MLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAMMPLAKQCA 258 (428)
Q Consensus 181 lVvs~~~~~~l~~~~--~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G 258 (428)
+|++.+ +++|.. ++..+++++.++|+|||.+++...... .....+... ......+...+.++++++|
T Consensus 161 ~I~~~~---vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~----~~~~~~d~~----d~~~~rs~~~~~~l~~~aG 229 (254)
T d1xtpa_ 161 LIVIQW---TAIYLTDADFVKFFKHCQQALTPNGYIFFKENCST----GDRFLVDKE----DSSLTRSDIHYKRLFNESG 229 (254)
T ss_dssp EEEEES---CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC------CCEEEETT----TTEEEBCHHHHHHHHHHHT
T ss_pred eEEeec---cccccchhhhHHHHHHHHHhcCCCcEEEEEecCCC----CCcceeccc----CCceeCCHHHHHHHHHHcC
Confidence 999977 445543 466889999999999999987532111 000110000 0112235677899999999
Q ss_pred CCCceEE
Q 014247 259 FEEPSVE 265 (428)
Q Consensus 259 f~~~~~~ 265 (428)
|+.+..+
T Consensus 230 f~ii~~~ 236 (254)
T d1xtpa_ 230 VRVVKEA 236 (254)
T ss_dssp CCEEEEE
T ss_pred CEEEEEE
Confidence 9876544
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.66 E-value=1.9e-16 Score=145.19 Aligned_cols=135 Identities=19% Similarity=0.224 Sum_probs=105.2
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC
Q 014247 97 TETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI 175 (428)
Q Consensus 97 ~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~ 175 (428)
++...+++.+.. .++++|||+|||+|.++..+++.|+ +|+|+|+| .+++.|+++++.|++. ++++++|+.+...
T Consensus 107 T~l~l~~l~~~~--~~g~~VLDiGcGsG~l~i~aa~~g~-~V~gvDis~~av~~A~~na~~n~~~--~~~~~~d~~~~~~ 181 (254)
T d2nxca1 107 TRLALKALARHL--RPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGVR--PRFLEGSLEAALP 181 (254)
T ss_dssp HHHHHHHHHHHC--CTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTCC--CEEEESCHHHHGG
T ss_pred hhHHHHHHHhhc--CccCEEEEcccchhHHHHHHHhcCC-EEEEEECChHHHHHHHHHHHHcCCc--eeEEecccccccc
Confidence 445556666654 7899999999999999999999886 89999999 9999999999999985 5788999877544
Q ss_pred CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhhccCCCCcchhHHHHH
Q 014247 176 DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAMMPLAK 255 (428)
Q Consensus 176 ~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 255 (428)
.++||+|+++.. ...+..++..+.++|||||+++++... .-+...+.+.++
T Consensus 182 ~~~fD~V~ani~------~~~l~~l~~~~~~~LkpGG~lilSgil-----------------------~~~~~~v~~~~~ 232 (254)
T d2nxca1 182 FGPFDLLVANLY------AELHAALAPRYREALVPGGRALLTGIL-----------------------KDRAPLVREAMA 232 (254)
T ss_dssp GCCEEEEEEECC------HHHHHHHHHHHHHHEEEEEEEEEEEEE-----------------------GGGHHHHHHHHH
T ss_pred ccccchhhhccc------cccHHHHHHHHHHhcCCCcEEEEEecc-----------------------hhhHHHHHHHHH
Confidence 589999999752 223667888999999999999974210 012345677788
Q ss_pred hcCCCCceEE
Q 014247 256 QCAFEEPSVE 265 (428)
Q Consensus 256 ~~Gf~~~~~~ 265 (428)
++||......
T Consensus 233 ~~Gf~~~~~~ 242 (254)
T d2nxca1 233 GAGFRPLEEA 242 (254)
T ss_dssp HTTCEEEEEE
T ss_pred HCCCEEEEEE
Confidence 8899765543
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.63 E-value=1.3e-15 Score=134.33 Aligned_cols=112 Identities=24% Similarity=0.305 Sum_probs=92.9
Q ss_pred HHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCC-cEEEEEcccccccCCCce
Q 014247 102 AAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTD-KVIVLHGRVEDVEIDEEV 179 (428)
Q Consensus 102 ~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~-~v~~~~~d~~~l~~~~~~ 179 (428)
+.+.+.+...++.+|||+|||+|.+++.+++.+ .+|+++|+| .+++.|+++++.+++.+ +++++.+|+.+...+++|
T Consensus 42 ~lLi~~l~~~~~~~VLDiGcG~G~~~~~la~~~-~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~~~~f 120 (194)
T d1dusa_ 42 KILVENVVVDKDDDILDLGCGYGVIGIALADEV-KSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRKY 120 (194)
T ss_dssp HHHHHHCCCCTTCEEEEETCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTSCE
T ss_pred HHHHHhCCcCCCCeEEEEeecCChhHHHHHhhc-cccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhccCCc
Confidence 445566677889999999999999999999875 499999999 99999999999998865 699999998774445899
Q ss_pred eEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 180 DVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 180 DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
|+|+++.+.+ ......+.+++.+.++|+|||.+++
T Consensus 121 D~Ii~~~p~~--~~~~~~~~~l~~~~~~LkpgG~l~i 155 (194)
T d1dusa_ 121 NKIITNPPIR--AGKEVLHRIIEEGKELLKDNGEIWV 155 (194)
T ss_dssp EEEEECCCST--TCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred eEEEEcccEE--ecchhhhhHHHHHHHhcCcCcEEEE
Confidence 9999987422 2233467889999999999999875
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.62 E-value=4.1e-16 Score=137.21 Aligned_cols=109 Identities=10% Similarity=0.019 Sum_probs=87.3
Q ss_pred ccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCC-----------CCcEEEEEccccccc
Q 014247 107 NQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNL-----------TDKVIVLHGRVEDVE 174 (428)
Q Consensus 107 ~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~l~ 174 (428)
.+...++.+|||+|||+|..+..+|+.|+ +|+|+|+| .|++.|+++++..+. ...+.++++|+.+++
T Consensus 15 ~l~~~~~~rvLd~GCG~G~~a~~la~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~ 93 (201)
T d1pjza_ 15 SLNVVPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALT 93 (201)
T ss_dssp HHCCCTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSST
T ss_pred HcCCCCCCEEEEecCcCCHHHHHHHHcCC-ceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccccc
Confidence 34568999999999999999999999998 89999999 999999998755422 123578888888775
Q ss_pred CC--CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 175 ID--EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 175 ~~--~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
.. ..||+|++..+.+.+ ...+...+++.+.++|||||.+++.
T Consensus 94 ~~~~~~~D~i~~~~~l~~l-~~~~~~~~~~~i~~~LkpgG~l~l~ 137 (201)
T d1pjza_ 94 ARDIGHCAAFYDRAAMIAL-PADMRERYVQHLEALMPQACSGLLI 137 (201)
T ss_dssp HHHHHSEEEEEEESCGGGS-CHHHHHHHHHHHHHHSCSEEEEEEE
T ss_pred cccccceeEEEEEeeeEec-chhhhHHHHHHHHHhcCCCcEEEEE
Confidence 43 689999997643332 2345788999999999999988753
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.60 E-value=1.1e-14 Score=134.11 Aligned_cols=163 Identities=20% Similarity=0.143 Sum_probs=114.8
Q ss_pred HHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEeChHHHHHHHHHHHHCCCCCcEEEEEcccccccCCCcee
Q 014247 102 AAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAG-AKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVD 180 (428)
Q Consensus 102 ~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g-~~~V~giD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~D 180 (428)
..+.+........+|||||||+|.++..++++. ..+++++|+.++++.|++++...++.+++.++.+|+.+ +.+.+||
T Consensus 71 ~~~~~~~d~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~~~~~~~~ri~~~~~d~~~-~~p~~~D 149 (256)
T d1qzza2 71 EAPADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFK-PLPVTAD 149 (256)
T ss_dssp HHHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSCCEE
T ss_pred HHHHhcCCCccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecChHHHHHHHHHHhhcCCcceeeeeeeeccc-cccccch
Confidence 344455555667899999999999999999983 34899999988899999999999999999999999876 4456799
Q ss_pred EEEEecchhhhcchh--hHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhh--hhh--ccCCCCcchhHHHH
Q 014247 181 VIISEWMGYMLLYES--MLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESID--FWR--NVYGIDMSAMMPLA 254 (428)
Q Consensus 181 lVvs~~~~~~l~~~~--~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~l~~~l 254 (428)
+|++.. ++++.. +...+|+++++.|||||++++....... .-........... .+. +....+.+++..++
T Consensus 150 ~v~~~~---vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~~~~-~~~~~~~~~~~~d~~ml~~~~g~~rt~~e~~~ll 225 (256)
T d1qzza2 150 VVLLSF---VLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVE-GDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLA 225 (256)
T ss_dssp EEEEES---CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH--------HHHHHHHHHHHHHHHSCCCCCHHHHHHHH
T ss_pred hhhccc---cccccCcHHHHHHHHHHHhhcCCcceeEEEEeccCC-CCcccHHHHHHHHHHHHhhCCCccCCHHHHHHHH
Confidence 999876 454443 3567899999999999988875432111 0011111111111 111 11223578899999
Q ss_pred HhcCCCCceEEeecC
Q 014247 255 KQCAFEEPSVETITG 269 (428)
Q Consensus 255 ~~~Gf~~~~~~~~~~ 269 (428)
+++||+...+....+
T Consensus 226 ~~AGf~~~~~~~~~~ 240 (256)
T d1qzza2 226 GSAGLALASERTSGS 240 (256)
T ss_dssp HTTTEEEEEEEEECC
T ss_pred HHCCCceeEEEEeCC
Confidence 999998877665544
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.60 E-value=1.3e-15 Score=143.10 Aligned_cols=122 Identities=23% Similarity=0.233 Sum_probs=90.3
Q ss_pred hhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCC---cEEEEEccc
Q 014247 95 VRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTD---KVIVLHGRV 170 (428)
Q Consensus 95 ~r~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~---~v~~~~~d~ 170 (428)
.|...+.+++...+...++.+|||||||+|.++..+++.|+ +|+|+|+| .|++.|+++....+... ...+...++
T Consensus 39 ~r~~~~~~~l~~~l~~~~~~~vLD~GcG~G~~~~~la~~g~-~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~ 117 (292)
T d1xvaa_ 39 SRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANW 117 (292)
T ss_dssp CBCHHHHHHHHHHHHHTTCCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCG
T ss_pred hhHHHHHHHHHHHhhhcCCCEEEEecCCCcHHHHHHHHcCC-eeeeccCchHHHHHHHHHHHhcccccccceeeeeeccc
Confidence 34445556666665556778999999999999999999987 89999999 99999999887765431 234455555
Q ss_pred cc----ccCCCceeEEEEec--chhhhc---chhhHHHHHHHHhcccccCeEEEcc
Q 014247 171 ED----VEIDEEVDVIISEW--MGYMLL---YESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 171 ~~----l~~~~~~DlVvs~~--~~~~l~---~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
.. ++..++||+|+|.. +.++.. ...+...+|+++.++|||||+|++.
T Consensus 118 ~~~~~~~~~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~ 173 (292)
T d1xvaa_ 118 LTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVID 173 (292)
T ss_dssp GGHHHHSCCTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred cccccccCCCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEe
Confidence 33 33457899999843 222221 2345788999999999999999974
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=1.8e-15 Score=139.03 Aligned_cols=152 Identities=13% Similarity=0.097 Sum_probs=102.9
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCc--------------------------
Q 014247 110 FIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDK-------------------------- 162 (428)
Q Consensus 110 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~-------------------------- 162 (428)
..++.+|||||||+|.++..++..++.+|+|+|+| .+++.|++++........
T Consensus 49 ~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (257)
T d2a14a1 49 GLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR 128 (257)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHh
Confidence 35678999999999999888887777789999999 999999998876543210
Q ss_pred --E-EEEEccccc----ccC-CCceeEEEEecchhhh-cchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchh
Q 014247 163 --V-IVLHGRVED----VEI-DEEVDVIISEWMGYML-LYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYS 233 (428)
Q Consensus 163 --v-~~~~~d~~~----l~~-~~~~DlVvs~~~~~~l-~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~ 233 (428)
+ .....+... .+. .++||+|++..+.+.+ ....++..+++++.++|||||.+++..... ...+.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~-------~~~~~ 201 (257)
T d2a14a1 129 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLR-------LPSYM 201 (257)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESS-------CCEEE
T ss_pred hhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecc-------cccce
Confidence 0 111111111 112 3789999996632222 233568899999999999999998754211 11111
Q ss_pred hhhhhhhccCCCCcchhHHHHHhcCCCCceEEeecC
Q 014247 234 ESIDFWRNVYGIDMSAMMPLAKQCAFEEPSVETITG 269 (428)
Q Consensus 234 ~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~~~ 269 (428)
.. ......+.++.+.+.++++++||+...++....
T Consensus 202 ~~-~~~~~~~~~~~~~~~~~l~~aGf~v~~~~~~~~ 236 (257)
T d2a14a1 202 VG-KREFSCVALEKGEVEQAVLDAGFDIEQLLHSPQ 236 (257)
T ss_dssp ET-TEEEECCCCCHHHHHHHHHHTTEEEEEEEEECC
T ss_pred ec-cccccccCCCHHHHHHHHHHCCCEEEEEEEecc
Confidence 00 001124567899999999999999877765543
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=1.5e-15 Score=137.53 Aligned_cols=116 Identities=22% Similarity=0.273 Sum_probs=90.7
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc--C
Q 014247 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE--I 175 (428)
Q Consensus 99 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~--~ 175 (428)
.+.+.+...+. .+|.+|||||||+|..+..+++.+.++|+|||+| .+++.|++++...+ .++.++..++..+. +
T Consensus 41 ~~~~~la~~~~-~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~ 117 (229)
T d1zx0a1 41 PYMHALAAAAS-SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTL 117 (229)
T ss_dssp HHHHHHHHHHT-TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGGS
T ss_pred HHHHHHHHhhc-cCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhcc--ccccccccccccccccc
Confidence 34444544443 5788999999999999999999866699999999 99999999876654 35788888876542 3
Q ss_pred C-CceeEEEEec--chhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 176 D-EEVDVIISEW--MGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 176 ~-~~~DlVvs~~--~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
+ ++||+|+... ....+.+..+...+++++.|+|||||++++.
T Consensus 118 ~~~~fD~i~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~ 162 (229)
T d1zx0a1 118 PDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC 162 (229)
T ss_dssp CTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred ccccccceeecccccccccccccCHHHHHHHHHHHcCCCcEEEEE
Confidence 3 7899998654 2345566677899999999999999999753
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=5.1e-15 Score=134.01 Aligned_cols=119 Identities=12% Similarity=-0.035 Sum_probs=94.6
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCC----------------C
Q 014247 97 TETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANN----------------L 159 (428)
Q Consensus 97 ~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~----------------~ 159 (428)
+..+.+.+.+.+...++.+|||+|||+|..+..+|+.|+ +|+|||+| .+++.|+++..... .
T Consensus 30 ~~~l~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~G~-~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (229)
T d2bzga1 30 HQLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADRGH-SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSS 108 (229)
T ss_dssp CHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEET
T ss_pred CHHHHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeec
Confidence 445666666666667889999999999999999999999 89999999 89988887654321 1
Q ss_pred CCcEEEEEcccccccC--CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 160 TDKVIVLHGRVEDVEI--DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 160 ~~~v~~~~~d~~~l~~--~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
..+++++++|+.+++. .+.||+|+...+.+.+ ...+...+++.+.++|||||.+++.
T Consensus 109 ~~~v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~-~~~~r~~~~~~~~~~LkpgG~~~l~ 167 (229)
T d2bzga1 109 SGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAI-NPGDRKCYADTMFSLLGKKFQYLLC 167 (229)
T ss_dssp TSSEEEEESCGGGGGGSCCCCEEEEEESSSTTTS-CGGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred CCcEEEEEcchhhccccccCceeEEEEEEEEEec-cchhhHHHHHHHHhhcCCcceEEEE
Confidence 2468999999988754 3889999986643333 3356889999999999999988764
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.55 E-value=5.3e-15 Score=134.83 Aligned_cols=108 Identities=17% Similarity=0.172 Sum_probs=88.9
Q ss_pred HHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCc
Q 014247 102 AAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-G-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEE 178 (428)
Q Consensus 102 ~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~ 178 (428)
..|...+...+|.+|||+|||+|.++..+|++ + ..+|+++|.+ ++++.|+++++..+...++++.++|+.+...++.
T Consensus 75 ~~Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~~~~ 154 (250)
T d1yb2a1 75 SYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQM 154 (250)
T ss_dssp ------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCC
T ss_pred HHHHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecccccce
Confidence 34566678899999999999999999999986 3 4599999999 9999999999987777789999999998766689
Q ss_pred eeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 179 VDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 179 ~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
||+|+++. .+++.++..+.++|||||++++.
T Consensus 155 fD~V~ld~--------p~p~~~l~~~~~~LKpGG~lv~~ 185 (250)
T d1yb2a1 155 YDAVIADI--------PDPWNHVQKIASMMKPGSVATFY 185 (250)
T ss_dssp EEEEEECC--------SCGGGSHHHHHHTEEEEEEEEEE
T ss_pred eeeeeecC--------CchHHHHHHHHHhcCCCceEEEE
Confidence 99999753 34567789999999999999863
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=1.6e-14 Score=133.53 Aligned_cols=151 Identities=12% Similarity=0.096 Sum_probs=101.5
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCC--------------------------
Q 014247 109 SFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTD-------------------------- 161 (428)
Q Consensus 109 ~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~-------------------------- 161 (428)
...+|.+|||||||+|.++...+..++.+|+|+|+| .|++.+++.+......-
T Consensus 51 g~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (263)
T d2g72a1 51 GEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQL 130 (263)
T ss_dssp SCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHH
T ss_pred CCCCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHh
Confidence 346789999999999998876665556699999999 99999988765432110
Q ss_pred ---cEEEEEccccccc------C-CCceeEEEEecchhhhc-chhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCcc
Q 014247 162 ---KVIVLHGRVEDVE------I-DEEVDVIISEWMGYMLL-YESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPD 230 (428)
Q Consensus 162 ---~v~~~~~d~~~l~------~-~~~~DlVvs~~~~~~l~-~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~ 230 (428)
...++..|+..-. . +++||+|++..+.+.+. ...++..+++++.++|||||.+++.... ....
T Consensus 131 ~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~------~~~~ 204 (263)
T d2g72a1 131 RARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGAL------EESW 204 (263)
T ss_dssp HHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEE------SCCE
T ss_pred hhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEeccc------CCcc
Confidence 1234445554321 1 25799999976333332 2346889999999999999999865321 1110
Q ss_pred chhhhhhhhhccCCCCcchhHHHHHhcCCCCceEEee
Q 014247 231 RYSESIDFWRNVYGIDMSAMMPLAKQCAFEEPSVETI 267 (428)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~ 267 (428)
.......+ ..+.++.+.+.++++++||+...++..
T Consensus 205 ~~~~~~~~--~~~~~t~e~v~~~l~~aGf~v~~~~~~ 239 (263)
T d2g72a1 205 YLAGEARL--TVVPVSEEEVREALVRSGYKVRDLRTY 239 (263)
T ss_dssp EEETTEEE--ECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred cccCCccc--ccCCCCHHHHHHHHHHCCCeEEEEEEe
Confidence 00011111 235688999999999999987765543
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.51 E-value=2.6e-14 Score=131.06 Aligned_cols=111 Identities=24% Similarity=0.330 Sum_probs=93.2
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHHC--CCCCcEEEEEcccccc
Q 014247 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-G-AKRVYAVDAS-DIAVQANEVVKAN--NLTDKVIVLHGRVEDV 173 (428)
Q Consensus 99 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~giD~s-~~~~~a~~~~~~~--~~~~~v~~~~~d~~~l 173 (428)
.=...|...+...+|++|||+|||+|.++..+|++ | ..+|+++|++ ++++.|+++++.. +..+++.++++|+.+.
T Consensus 83 kD~s~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~ 162 (264)
T d1i9ga_ 83 KDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADS 162 (264)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGC
T ss_pred HHHHHHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccc
Confidence 33456777788899999999999999999999997 4 4599999999 9999999988753 4456799999999987
Q ss_pred cCC-CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 174 EID-EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 174 ~~~-~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
+++ +.||.|+.+. ++++.++..+.++|||||++++.
T Consensus 163 ~~~~~~fDaV~ldl--------p~P~~~l~~~~~~LkpGG~lv~~ 199 (264)
T d1i9ga_ 163 ELPDGSVDRAVLDM--------LAPWEVLDAVSRLLVAGGVLMVY 199 (264)
T ss_dssp CCCTTCEEEEEEES--------SCGGGGHHHHHHHEEEEEEEEEE
T ss_pred cccCCCcceEEEec--------CCHHHHHHHHHhccCCCCEEEEE
Confidence 764 8999998642 45678899999999999999853
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.51 E-value=2.2e-14 Score=132.15 Aligned_cols=110 Identities=21% Similarity=0.257 Sum_probs=93.7
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC
Q 014247 100 YRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-G-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID 176 (428)
Q Consensus 100 ~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~ 176 (428)
=...|...+...+|.+|||+|||+|.++..+|+. + ..+|+++|++ ++++.|+++++..++.+++.+...|+......
T Consensus 91 d~~~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~~~ 170 (266)
T d1o54a_ 91 DSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDE 170 (266)
T ss_dssp HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSC
T ss_pred HHHHHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccccccc
Confidence 3456777788899999999999999999999986 3 3599999999 99999999999999988899999998665445
Q ss_pred CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 177 EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 177 ~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
..||.|+... .+++.+++.+.++|||||++++.
T Consensus 171 ~~~D~V~~d~--------p~p~~~l~~~~~~LKpGG~lv~~ 203 (266)
T d1o54a_ 171 KDVDALFLDV--------PDPWNYIDKCWEALKGGGRFATV 203 (266)
T ss_dssp CSEEEEEECC--------SCGGGTHHHHHHHEEEEEEEEEE
T ss_pred cceeeeEecC--------CCHHHHHHHHHhhcCCCCEEEEE
Confidence 7899988632 45778899999999999999853
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.50 E-value=3.7e-14 Score=119.81 Aligned_cols=104 Identities=14% Similarity=0.191 Sum_probs=85.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccc-c-CCCceeEEEEecc
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDV-E-IDEEVDVIISEWM 187 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l-~-~~~~~DlVvs~~~ 187 (428)
..|++|||+|||+|.+++.++.+|+++|+++|.+ .+++.+++++..+++.++++++++|+.+. . ..++||+|+++++
T Consensus 13 ~~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DPP 92 (152)
T d2esra1 13 FNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPP 92 (152)
T ss_dssp CCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCS
T ss_pred CCCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEechh
Confidence 5789999999999999999999999999999999 99999999999999999999999998774 2 2488999999874
Q ss_pred hhhhcchhhHHHHHHHH--hcccccCeEEEccC
Q 014247 188 GYMLLYESMLGSVITAR--DRWLKRGGLILPSY 218 (428)
Q Consensus 188 ~~~l~~~~~~~~~l~~~--~~~LkpgG~lv~~~ 218 (428)
.. .......+..+ .++|+|||.+++..
T Consensus 93 y~----~~~~~~~l~~i~~~~~L~~~g~iiiE~ 121 (152)
T d2esra1 93 YA----KETIVATIEALAAKNLLSEQVMVVCET 121 (152)
T ss_dssp SH----HHHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred hc----cchHHHHHHHHHHCCCcCCCeEEEEEe
Confidence 22 22233444444 46899999998753
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.50 E-value=4.2e-14 Score=127.63 Aligned_cols=149 Identities=13% Similarity=0.141 Sum_probs=102.2
Q ss_pred HHHHHHHhc---cCCCCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccc
Q 014247 99 TYRAAIMQN---QSFIEGKVVVDVGCGTGILSIFCAQAG-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDV 173 (428)
Q Consensus 99 ~~~~~i~~~---~~~~~~~~VLDiGcGtG~ls~~la~~g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l 173 (428)
.+..+|... +...+|.+|||||||+|..+..+|+.+ ...|+|+|+| .|++.|++++... .++.++.+|....
T Consensus 58 klaA~i~~gl~~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~---~ni~~i~~d~~~~ 134 (230)
T d1g8sa_ 58 KLAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER---ENIIPILGDANKP 134 (230)
T ss_dssp HHHHHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC---TTEEEEECCTTCG
T ss_pred HHHHHHHhhHHhCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhh---cccceEEEeeccC
Confidence 455666653 456889999999999999999999973 4599999999 9999998876544 3577788887764
Q ss_pred cC--CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhhhhhhhhccCCCCcchhH
Q 014247 174 EI--DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSESIDFWRNVYGIDMSAMM 251 (428)
Q Consensus 174 ~~--~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 251 (428)
.. +..+|++++.. .+.+..+...++.++.++|||||.+++..... ....... .. ...+...
T Consensus 135 ~~~~~~~~~v~~i~~---~~~~~~~~~~~l~~~~r~LKpgG~~~i~~k~~---~~d~~~~-------~~----~~~~e~~ 197 (230)
T d1g8sa_ 135 QEYANIVEKVDVIYE---DVAQPNQAEILIKNAKWFLKKGGYGMIAIKAR---SIDVTKD-------PK----EIFKEQK 197 (230)
T ss_dssp GGGTTTCCCEEEEEE---CCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGG---GTCSSSC-------HH----HHHHHHH
T ss_pred cccccccceeEEeec---cccchHHHHHHHHHHHHhcccCceEEEEeecc---ccCCCCC-------HH----HHHHHHH
Confidence 32 24556555422 44556678999999999999999988642110 0000000 00 0124566
Q ss_pred HHHHhcCCCCceEEee
Q 014247 252 PLAKQCAFEEPSVETI 267 (428)
Q Consensus 252 ~~l~~~Gf~~~~~~~~ 267 (428)
+.|+++||+..+...+
T Consensus 198 ~~L~~aGF~ive~idL 213 (230)
T d1g8sa_ 198 EILEAGGFKIVDEVDI 213 (230)
T ss_dssp HHHHHHTEEEEEEEEC
T ss_pred HHHHHcCCEEEEEecC
Confidence 7788999987655444
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.47 E-value=1.3e-13 Score=122.49 Aligned_cols=111 Identities=20% Similarity=0.222 Sum_probs=88.0
Q ss_pred HHHHHHHh--ccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc
Q 014247 99 TYRAAIMQ--NQSFIEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE 174 (428)
Q Consensus 99 ~~~~~i~~--~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~ 174 (428)
....++.. .+...||.+|||+|||+|..+..+++. +..+|+|+|+| .|++.|+++++..+ ++.++.+|+.+..
T Consensus 41 klaa~i~~g~~l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~---ni~~i~~d~~~~~ 117 (209)
T d1nt2a_ 41 KLAAMILKGHRLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERN---NIIPLLFDASKPW 117 (209)
T ss_dssp HHHHHHHTSCCCCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCS---SEEEECSCTTCGG
T ss_pred HHHHHHhccccCCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccC---CceEEEeeccCcc
Confidence 34455544 356789999999999999999999986 55699999999 99999999887753 5999999988764
Q ss_pred CC----CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 175 ID----EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 175 ~~----~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
.. ..+|+|++. +.+..+...++.++.++|||||.+++.
T Consensus 118 ~~~~~~~~vd~v~~~-----~~~~~~~~~~l~~~~~~LkpgG~l~i~ 159 (209)
T d1nt2a_ 118 KYSGIVEKVDLIYQD-----IAQKNQIEILKANAEFFLKEKGEVVIM 159 (209)
T ss_dssp GTTTTCCCEEEEEEC-----CCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccccccceEEEEEec-----ccChhhHHHHHHHHHHHhccCCeEEEE
Confidence 42 456666653 334556888999999999999999864
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.47 E-value=1.6e-13 Score=122.52 Aligned_cols=108 Identities=23% Similarity=0.195 Sum_probs=85.8
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC
Q 014247 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-G-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI 175 (428)
Q Consensus 99 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~ 175 (428)
.....+.+.+...+|.+|||||||+|.++..+|+. | ..+|+++|++ .+++.|+++++..++.+ +.++++|..+...
T Consensus 62 ~~~a~~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n-~~~~~~d~~~~~~ 140 (213)
T d1dl5a1 62 SLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIEN-VIFVCGDGYYGVP 140 (213)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEESCGGGCCG
T ss_pred hhhHHHHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccc-cccccCchHHccc
Confidence 33445667778899999999999999999999986 3 3489999999 99999999999988865 8889999877544
Q ss_pred -CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 176 -DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 176 -~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
.++||+|++.. .+.+.. +.+.+.|||||++++
T Consensus 141 ~~~~fD~I~~~~---~~~~~p------~~l~~~LkpGG~lv~ 173 (213)
T d1dl5a1 141 EFSPYDVIFVTV---GVDEVP------ETWFTQLKEGGRVIV 173 (213)
T ss_dssp GGCCEEEEEECS---BBSCCC------HHHHHHEEEEEEEEE
T ss_pred cccchhhhhhhc---cHHHhH------HHHHHhcCCCcEEEE
Confidence 37899999865 333322 234567999999975
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.46 E-value=5.2e-13 Score=122.96 Aligned_cols=151 Identities=16% Similarity=0.157 Sum_probs=112.1
Q ss_pred hhhhccChhhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEE
Q 014247 87 HEEMIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVI 164 (428)
Q Consensus 87 ~~~~~~d~~r~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~ 164 (428)
....+-.+..++.+.+.+..... ..+.+|||+|||+|.+++.++.. ...+|+|+|+| ..++.|+++++.+++. +++
T Consensus 84 ~~~VlIPRpeTE~lv~~~l~~~~-~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~-~v~ 161 (274)
T d2b3ta1 84 SPATLIPRPDTECLVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIK-NIH 161 (274)
T ss_dssp CTTSCCCCTTHHHHHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCC-SEE
T ss_pred eccccccccchhhhhhhHhhhhc-ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcc-cce
Confidence 34455566777777776666543 45678999999999999999886 45599999999 9999999999999985 599
Q ss_pred EEEcccccccCCCceeEEEEecchh----------hhcch------------hhHHHHHHHHhcccccCeEEEccCCeee
Q 014247 165 VLHGRVEDVEIDEEVDVIISEWMGY----------MLLYE------------SMLGSVITARDRWLKRGGLILPSYATLY 222 (428)
Q Consensus 165 ~~~~d~~~l~~~~~~DlVvs~~~~~----------~l~~~------------~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 222 (428)
++++|+.+-....+||+|+|++... ...++ .....++..+.++|+|||.+++....
T Consensus 162 ~~~~d~~~~~~~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig~-- 239 (274)
T d2b3ta1 162 ILQSDWFSALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGW-- 239 (274)
T ss_dssp EECCSTTGGGTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCS--
T ss_pred eeecccccccCCCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEECc--
Confidence 9999987744447999999987310 01111 23567889999999999999863210
Q ss_pred EeecCCccchhhhhhhhhccCCCCcchhHHHHHhcCCCCce
Q 014247 223 MAPVTHPDRYSESIDFWRNVYGIDMSAMMPLAKQCAFEEPS 263 (428)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~ 263 (428)
-....+.+++.+.||..+.
T Consensus 240 ----------------------~q~~~v~~~l~~~gf~~i~ 258 (274)
T d2b3ta1 240 ----------------------QQGEAVRQAFILAGYHDVE 258 (274)
T ss_dssp ----------------------SCHHHHHHHHHHTTCTTCC
T ss_pred ----------------------hHHHHHHHHHHHCCCCeEE
Confidence 0124566778888997654
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.45 E-value=8.9e-14 Score=132.11 Aligned_cols=117 Identities=25% Similarity=0.246 Sum_probs=94.6
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc----
Q 014247 100 YRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE---- 174 (428)
Q Consensus 100 ~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~---- 174 (428)
.+.++...+ .+|++|||+|||+|.+++.+++.|+++|+++|+| .+++.|+++++.||+.++++++++|+.+..
T Consensus 135 ~r~~~~~~~--~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~ 212 (324)
T d2as0a2 135 NRLALEKWV--QPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQ 212 (324)
T ss_dssp HHHHHGGGC--CTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHH
T ss_pred HHHHHHhhc--CCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHH
Confidence 344554443 6789999999999999999999999999999999 999999999999999888999999987642
Q ss_pred -CCCceeEEEEecchhhhcc------hhhHHHHHHHHhcccccCeEEEccC
Q 014247 175 -IDEEVDVIISEWMGYMLLY------ESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 175 -~~~~~DlVvs~~~~~~l~~------~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
...+||+|++++....... ..+...++..+.++|+|||+|+.++
T Consensus 213 ~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s 263 (324)
T d2as0a2 213 KKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCS 263 (324)
T ss_dssp HTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred hccCCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 2378999999874322211 2235667888899999999999754
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=3.2e-13 Score=125.66 Aligned_cols=141 Identities=12% Similarity=0.103 Sum_probs=95.5
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc------CC-CeEEEEeCh-HHHHHHHHHHHHCCCCCcE--EEEEcccccc------c
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQA------GA-KRVYAVDAS-DIAVQANEVVKANNLTDKV--IVLHGRVEDV------E 174 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~------g~-~~V~giD~s-~~~~~a~~~~~~~~~~~~v--~~~~~d~~~l------~ 174 (428)
.+..+|||||||+|.++..+++. +. .+++|||+| .|++.|++++.....-..+ .+...+++++ .
T Consensus 39 ~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (280)
T d1jqea_ 39 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEK 118 (280)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTS
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhccc
Confidence 34458999999999988777653 11 268999999 9999999987654332334 3444444432 1
Q ss_pred -CCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhh-hhhhhhc------cCCCC
Q 014247 175 -IDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSE-SIDFWRN------VYGID 246 (428)
Q Consensus 175 -~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~-~~~~~~~------~~~~~ 246 (428)
.+++||+|++.. ++++..++..+++++.++|+|||.+++...+ ....+.. ...+|.. ...+.
T Consensus 119 ~~~~~fD~I~~~~---~l~~~~d~~~~l~~l~~~LkpgG~l~i~~~~-------~~~~~~~l~~~~~~~~~~~~~~~~~~ 188 (280)
T d1jqea_ 119 KELQKWDFIHMIQ---MLYYVKDIPATLKFFHSLLGTNAKMLIIVVS-------GSSGWDKLWKKYGSRFPQDDLCQYIT 188 (280)
T ss_dssp SSCCCEEEEEEES---CGGGCSCHHHHHHHHHHTEEEEEEEEEEEEC-------TTSHHHHHHHHHGGGSCCCTTSCCCC
T ss_pred CCCCceeEEEEcc---ceecCCCHHHHHHHHHhhCCCCCEEEEEEec-------CcchHHHHHHHHHHhcCCCcccccCC
Confidence 248999999866 7777888999999999999999988864211 1111111 1122221 22345
Q ss_pred cchhHHHHHhcCCCC
Q 014247 247 MSAMMPLAKQCAFEE 261 (428)
Q Consensus 247 ~~~l~~~l~~~Gf~~ 261 (428)
...+..++.+.||..
T Consensus 189 ~~~~~~~L~~~G~~~ 203 (280)
T d1jqea_ 189 SDDLTQMLDNLGLKY 203 (280)
T ss_dssp HHHHHHHHHHHTCCE
T ss_pred HHHHHHHHHHCCCce
Confidence 667889999999964
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.45 E-value=1.5e-13 Score=126.17 Aligned_cols=108 Identities=20% Similarity=0.182 Sum_probs=90.1
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCc
Q 014247 100 YRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEE 178 (428)
Q Consensus 100 ~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~ 178 (428)
.+..+...+ .+|.+|||+|||+|.+++.+|+.|+.+|+++|++ ..++.++++++.|++.++++++++|+.++.....
T Consensus 97 er~ri~~~~--~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~~~~ 174 (260)
T d2frna1 97 ERVRMAKVA--KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENI 174 (260)
T ss_dssp HHHHHHHHC--CTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSC
T ss_pred HHHHHHhhc--CCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhccCCC
Confidence 344555554 6899999999999999999999887799999999 9999999999999999999999999999877789
Q ss_pred eeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 179 VDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 179 ~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
||.|+++.+... ..++..+.++|++||.+.+
T Consensus 175 ~D~Ii~~~p~~~-------~~~l~~a~~~l~~gG~lh~ 205 (260)
T d2frna1 175 ADRILMGYVVRT-------HEFIPKALSIAKDGAIIHY 205 (260)
T ss_dssp EEEEEECCCSSG-------GGGHHHHHHHEEEEEEEEE
T ss_pred CCEEEECCCCch-------HHHHHHHHhhcCCCCEEEE
Confidence 999998653221 2345566778999998854
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.42 E-value=1.8e-13 Score=126.54 Aligned_cols=102 Identities=20% Similarity=0.243 Sum_probs=79.9
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCC-CeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC-
Q 014247 100 YRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGA-KRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID- 176 (428)
Q Consensus 100 ~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~-~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~- 176 (428)
....+.... ..++.+|||||||+|.++..+++.+. .+++|+|+| .|++.|+++. .++.++++|+.+++++
T Consensus 73 ~~~~l~~~~-~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~------~~~~~~~~d~~~l~~~~ 145 (268)
T d1p91a_ 73 IVAQLRERL-DDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY------PQVTFCVASSHRLPFSD 145 (268)
T ss_dssp HHHHHHHHS-CTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC------TTSEEEECCTTSCSBCT
T ss_pred HHHHHHHhc-CCCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc------ccccceeeehhhccCCC
Confidence 334444443 35678999999999999999999843 489999999 9998887652 3589999999999885
Q ss_pred CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccC
Q 014247 177 EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 177 ~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
++||+|++.. .+.+ ++++.|+|||||.+++..
T Consensus 146 ~sfD~v~~~~---~~~~-------~~e~~rvLkpgG~l~~~~ 177 (268)
T d1p91a_ 146 TSMDAIIRIY---APCK-------AEELARVVKPGGWVITAT 177 (268)
T ss_dssp TCEEEEEEES---CCCC-------HHHHHHHEEEEEEEEEEE
T ss_pred CCEEEEeecC---CHHH-------HHHHHHHhCCCcEEEEEe
Confidence 8999999854 2222 467889999999999754
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=7.2e-13 Score=118.96 Aligned_cols=105 Identities=23% Similarity=0.270 Sum_probs=81.9
Q ss_pred HHHhcc--CCCCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHHCCCC----CcEEEEEcccccc
Q 014247 103 AIMQNQ--SFIEGKVVVDVGCGTGILSIFCAQA-G-AKRVYAVDAS-DIAVQANEVVKANNLT----DKVIVLHGRVEDV 173 (428)
Q Consensus 103 ~i~~~~--~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~giD~s-~~~~~a~~~~~~~~~~----~~v~~~~~d~~~l 173 (428)
.+.+.+ ...+|.+|||||||+|.++..+|+. | ..+|+++|.+ ++++.|++++++.++. +++.++.+|....
T Consensus 65 ~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~ 144 (224)
T d1i1na_ 65 YALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMG 144 (224)
T ss_dssp HHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGC
T ss_pred HHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccc
Confidence 344444 4578999999999999999999886 4 4599999999 9999999998876542 4689999998876
Q ss_pred cCC-CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 174 EID-EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 174 ~~~-~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
..+ ++||+|++.. .+.+.. ..+.+.|||||++++
T Consensus 145 ~~~~~~fD~I~~~~---~~~~ip------~~l~~~LkpGG~LV~ 179 (224)
T d1i1na_ 145 YAEEAPYDAIHVGA---AAPVVP------QALIDQLKPGGRLIL 179 (224)
T ss_dssp CGGGCCEEEEEECS---BBSSCC------HHHHHTEEEEEEEEE
T ss_pred cchhhhhhhhhhhc---chhhcC------HHHHhhcCCCcEEEE
Confidence 554 7899999865 333222 345678999999985
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=5.3e-13 Score=125.99 Aligned_cols=109 Identities=21% Similarity=0.257 Sum_probs=87.1
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHHC----------CCCCcEEEEE
Q 014247 101 RAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-G-AKRVYAVDAS-DIAVQANEVVKAN----------NLTDKVIVLH 167 (428)
Q Consensus 101 ~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~giD~s-~~~~~a~~~~~~~----------~~~~~v~~~~ 167 (428)
...|...+...+|.+|||+|||+|.++..+|++ | ..+|+++|++ ++++.|+++++.. +..+++.+.+
T Consensus 87 ~~~Il~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~ 166 (324)
T d2b25a1 87 INMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIH 166 (324)
T ss_dssp HHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEE
T ss_pred HHHHHHHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEe
Confidence 446667778899999999999999999999997 4 3499999999 9999999988753 3456799999
Q ss_pred cccccccC---CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 168 GRVEDVEI---DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 168 ~d~~~l~~---~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
+|+.+... ...||.|+.+. ++++.++..+.++|||||++++.
T Consensus 167 ~di~~~~~~~~~~~fD~V~LD~--------p~P~~~l~~~~~~LKpGG~lv~~ 211 (324)
T d2b25a1 167 KDISGATEDIKSLTFDAVALDM--------LNPHVTLPVFYPHLKHGGVCAVY 211 (324)
T ss_dssp SCTTCCC-------EEEEEECS--------SSTTTTHHHHGGGEEEEEEEEEE
T ss_pred cchhhcccccCCCCcceEeecC--------cCHHHHHHHHHHhccCCCEEEEE
Confidence 99887643 26899998643 23556788999999999999853
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=5.6e-13 Score=126.76 Aligned_cols=115 Identities=20% Similarity=0.261 Sum_probs=89.7
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHC-------CC-CCcEEEEEcc
Q 014247 100 YRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKAN-------NL-TDKVIVLHGR 169 (428)
Q Consensus 100 ~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~-------~~-~~~v~~~~~d 169 (428)
....+.+.+...++.+|||||||+|.++..+|+. ++++++|||++ .+++.|+++.+.. |. ..+++++++|
T Consensus 139 ~~~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd 218 (328)
T d1nw3a_ 139 LVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGD 218 (328)
T ss_dssp HHHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECC
T ss_pred HHHHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECc
Confidence 3445556677889999999999999999988875 77799999999 9999988765542 22 2469999999
Q ss_pred cccccCC---CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccC
Q 014247 170 VEDVEID---EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 170 ~~~l~~~---~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
+.+.+.. ..+|+|+++. .. +..++...+.++.+.|||||++|...
T Consensus 219 ~~~~~~~~~~~~advi~~~~---~~-f~~~~~~~l~e~~r~LKpGg~iv~~~ 266 (328)
T d1nw3a_ 219 FLSEEWRERIANTSVIFVNN---FA-FGPEVDHQLKERFANMKEGGRIVSSK 266 (328)
T ss_dssp TTSHHHHHHHHHCSEEEECC---TT-TCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred ccccccccccCcceEEEEcc---ee-cchHHHHHHHHHHHhCCCCcEEEEec
Confidence 9887654 2357888754 33 34568889999999999999998643
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.38 E-value=9.3e-13 Score=116.37 Aligned_cols=102 Identities=16% Similarity=0.214 Sum_probs=82.6
Q ss_pred CCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc--C-CCceeEEEEec
Q 014247 112 EGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE--I-DEEVDVIISEW 186 (428)
Q Consensus 112 ~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~--~-~~~~DlVvs~~ 186 (428)
....|||||||+|..+..+|+. .-..++|||++ .++..|.+++...++. ++.++++|+..+. + ++.+|.|++..
T Consensus 29 ~~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~-Nv~~~~~Da~~l~~~~~~~~~d~v~i~f 107 (204)
T d2fcaa1 29 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQ-NVKLLNIDADTLTDVFEPGEVKRVYLNF 107 (204)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCS-SEEEECCCGGGHHHHCCTTSCCEEEEES
T ss_pred CCceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhcc-CchhcccchhhhhcccCchhhhcccccc
Confidence 3458999999999999999987 34589999999 9999999999999996 4999999998764 2 48899998754
Q ss_pred chhhhcchhh--------HHHHHHHHhcccccCeEEEcc
Q 014247 187 MGYMLLYESM--------LGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 187 ~~~~l~~~~~--------~~~~l~~~~~~LkpgG~lv~~ 217 (428)
. ..+... -+.+++.+.++|||||.|++.
T Consensus 108 p---~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~ 143 (204)
T d2fcaa1 108 S---DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFK 143 (204)
T ss_dssp C---CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEE
T ss_pred c---cccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEE
Confidence 2 222211 258999999999999999864
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.36 E-value=1.6e-12 Score=116.19 Aligned_cols=102 Identities=16% Similarity=0.228 Sum_probs=79.9
Q ss_pred HHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC-CCce
Q 014247 102 AAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI-DEEV 179 (428)
Q Consensus 102 ~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~-~~~~ 179 (428)
..+.+.+...++.+|||||||+|.++..+|+.+ .+|+++|.+ .+++.|+++.... +++.++.+|...... .++|
T Consensus 60 a~ml~~L~l~~g~~VLdIG~GsGy~ta~La~l~-~~V~aiE~~~~~~~~A~~~~~~~---~nv~~~~~d~~~g~~~~~pf 135 (224)
T d1vbfa_ 60 IFMLDELDLHKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYY---NNIKLILGDGTLGYEEEKPY 135 (224)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTC---SSEEEEESCGGGCCGGGCCE
T ss_pred HHHHHHhhhcccceEEEecCCCCHHHHHHHHHh-cccccccccHHHHHHHHHHHhcc---cccccccCchhhcchhhhhH
Confidence 345667788999999999999999999999985 599999999 9999998876543 469999999876433 4789
Q ss_pred eEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 180 DVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 180 DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
|+|++.. .+.+. + ..+.+.|+|||+|++
T Consensus 136 D~Iiv~~---a~~~i--p----~~l~~qLk~GGrLV~ 163 (224)
T d1vbfa_ 136 DRVVVWA---TAPTL--L----CKPYEQLKEGGIMIL 163 (224)
T ss_dssp EEEEESS---BBSSC--C----HHHHHTEEEEEEEEE
T ss_pred HHHHhhc---chhhh--h----HHHHHhcCCCCEEEE
Confidence 9999854 33322 2 334567999999885
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=99.36 E-value=1.9e-12 Score=122.12 Aligned_cols=109 Identities=22% Similarity=0.173 Sum_probs=90.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCC-CcEEEEEccccccc-----CCCceeEEE
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLT-DKVIVLHGRVEDVE-----IDEEVDVII 183 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~-~~v~~~~~d~~~l~-----~~~~~DlVv 183 (428)
.+|++|||++||+|.+++.++..|+++|+++|+| ..++.|+++++.|++. .+++++++|+.+.- ..++||+|+
T Consensus 143 ~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~Ii 222 (317)
T d2b78a2 143 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII 222 (317)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred hCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEEE
Confidence 6789999999999999999999999999999999 9999999999999985 57999999986641 236899999
Q ss_pred Eecchhh------hcchhhHHHHHHHHhcccccCeEEEccCC
Q 014247 184 SEWMGYM------LLYESMLGSVITARDRWLKRGGLILPSYA 219 (428)
Q Consensus 184 s~~~~~~------l~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 219 (428)
+++..+. .....+...++..+.++|+|||.|+.+++
T Consensus 223 ~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~sc 264 (317)
T d2b78a2 223 IDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTN 264 (317)
T ss_dssp ECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred EcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 9874221 11223567788999999999999997543
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.33 E-value=1.4e-12 Score=123.33 Aligned_cols=107 Identities=24% Similarity=0.262 Sum_probs=86.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc-----CCCceeEEEE
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE-----IDEEVDVIIS 184 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~-----~~~~~DlVvs 184 (428)
.+|++|||++||+|.+++.+|+ |+++|+++|+| .+++.|+++++.|++. +++++++|+.++. ..++||+|++
T Consensus 144 ~~g~rVLDl~~gtG~~s~~~a~-g~~~V~~vD~s~~al~~a~~n~~~ngl~-~~~~i~~d~~~~~~~~~~~~~~fD~Vi~ 221 (318)
T d1wxxa2 144 FRGERALDVFSYAGGFALHLAL-GFREVVAVDSSAEALRRAEENARLNGLG-NVRVLEANAFDLLRRLEKEGERFDLVVL 221 (318)
T ss_dssp CCEEEEEEETCTTTHHHHHHHH-HEEEEEEEESCHHHHHHHHHHHHHTTCT-TEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred hCCCeeeccCCCCcHHHHHHHh-cCCcEEeecchHHHHHHHHHHHHHcCCC-CcceeeccHHHHhhhhHhhhcCCCEEEE
Confidence 4789999999999999999886 46699999999 9999999999999996 4999999987641 2378999999
Q ss_pred ecchhhhc------chhhHHHHHHHHhcccccCeEEEccCC
Q 014247 185 EWMGYMLL------YESMLGSVITARDRWLKRGGLILPSYA 219 (428)
Q Consensus 185 ~~~~~~l~------~~~~~~~~l~~~~~~LkpgG~lv~~~~ 219 (428)
++..+... .......++..+.++|+|||.|+.+++
T Consensus 222 DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~sc 262 (318)
T d1wxxa2 222 DPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASC 262 (318)
T ss_dssp CCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred cCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 86432211 123456788889999999999987543
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=99.31 E-value=2.7e-12 Score=110.31 Aligned_cols=103 Identities=17% Similarity=0.193 Sum_probs=78.2
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccc--c-cCCCceeEEEEec
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVED--V-EIDEEVDVIISEW 186 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~--l-~~~~~~DlVvs~~ 186 (428)
.++.+|||+|||+|.+++.++..|+ +|+++|.+ .+++.++++++.+++.+++....+|... . ...++||+|++++
T Consensus 40 ~~g~~vLDl~~G~G~~~i~a~~~ga-~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~DP 118 (171)
T d1ws6a1 40 PRRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP 118 (171)
T ss_dssp TTCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred cCCCeEEEeccccchhhhhhhhccc-hhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEEcc
Confidence 6788999999999999999999988 79999999 9999999999999998777666655421 1 2237899999987
Q ss_pred chhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 187 MGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 187 ~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
.. .......+..++. ..+|+|||++++.
T Consensus 119 PY-~~~~~~~l~~l~~--~~ll~~~g~ivie 146 (171)
T d1ws6a1 119 PY-AMDLAALFGELLA--SGLVEAGGLYVLQ 146 (171)
T ss_dssp CT-TSCTTHHHHHHHH--HTCEEEEEEEEEE
T ss_pred cc-ccCHHHHHHHHHH--cCCcCCCeEEEEE
Confidence 42 2222222333333 3689999998864
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.31 E-value=2.6e-12 Score=119.75 Aligned_cols=106 Identities=21% Similarity=0.088 Sum_probs=86.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCC-cEEEEEccccccc-----CCCceeEEE
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTD-KVIVLHGRVEDVE-----IDEEVDVII 183 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~-~v~~~~~d~~~l~-----~~~~~DlVv 183 (428)
.++.+|||++||+|.+++.+++.|+ +|++||.| .+++.|++++..|++.+ +++++++|+.+.- ...+||+||
T Consensus 131 ~~~~rVLdlf~~tG~~sl~aa~~GA-~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~Ii 209 (309)
T d2igta1 131 DRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL 209 (309)
T ss_dssp SSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred cCCCeEEEecCCCcHHHHHHHhCCC-eEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEEE
Confidence 5788999999999999999999888 89999999 99999999999999875 6999999987642 237899999
Q ss_pred Eecchhhh-------cchhhHHHHHHHHhcccccCeEEEcc
Q 014247 184 SEWMGYML-------LYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 184 s~~~~~~l-------~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
+++..+.- ....+...++..+..+|+|||.+++.
T Consensus 210 lDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~ 250 (309)
T d2igta1 210 TDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVL 250 (309)
T ss_dssp ECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEE
T ss_pred ECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 98743221 11345677888889999999976543
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.30 E-value=7.5e-12 Score=121.03 Aligned_cols=114 Identities=18% Similarity=0.201 Sum_probs=83.3
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCC-------CC-CcEEE-EEcc
Q 014247 101 RAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANN-------LT-DKVIV-LHGR 169 (428)
Q Consensus 101 ~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~-------~~-~~v~~-~~~d 169 (428)
...|.+.+...++++|||||||+|.+++.+|+. |+++|+|||++ .+++.|+++++..+ .. ..+.+ +.++
T Consensus 205 i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~ 284 (406)
T d1u2za_ 205 LSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKS 284 (406)
T ss_dssp HHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSC
T ss_pred HHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeec
Confidence 444556677899999999999999999998876 77799999999 99999998876531 11 11222 3344
Q ss_pred cccccC----CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccC
Q 014247 170 VEDVEI----DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 170 ~~~l~~----~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
..+.+. -..+|+|+++. +.+..++...|.++.+.|||||+++...
T Consensus 285 f~~~~~~d~~~~~adVV~inn----~~f~~~l~~~L~ei~r~LKPGGrIVs~~ 333 (406)
T d1u2za_ 285 FVDNNRVAELIPQCDVILVNN----FLFDEDLNKKVEKILQTAKVGCKIISLK 333 (406)
T ss_dssp STTCHHHHHHGGGCSEEEECC----TTCCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred hhhccccccccccceEEEEec----ccCchHHHHHHHHHHHhcCCCcEEEEec
Confidence 332211 14678998754 3345668999999999999999998643
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.30 E-value=2.4e-12 Score=115.48 Aligned_cols=111 Identities=22% Similarity=0.363 Sum_probs=86.8
Q ss_pred HHHHHHHhc---cCCCCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccc
Q 014247 99 TYRAAIMQN---QSFIEGKVVVDVGCGTGILSIFCAQA-G-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVED 172 (428)
Q Consensus 99 ~~~~~i~~~---~~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 172 (428)
....+|..- +...+|.+|||+|||+|.++..+|+. | ..+|+|+|++ .+++.++++++.. .++..+..|...
T Consensus 57 Klaa~i~~~l~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~---~~~~~i~~d~~~ 133 (227)
T d1g8aa_ 57 KLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER---RNIVPILGDATK 133 (227)
T ss_dssp HHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC---TTEEEEECCTTC
T ss_pred HHHHHHHccccccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhc---CCceEEEEECCC
Confidence 455666543 45789999999999999999999997 4 4599999999 9999998887554 247777788755
Q ss_pred cc---C-CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 173 VE---I-DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 173 l~---~-~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
.. . ...+|+|++. +.+......++.++.++|||||.+++.
T Consensus 134 ~~~~~~~~~~vD~i~~d-----~~~~~~~~~~l~~~~~~LkpgG~lvi~ 177 (227)
T d1g8aa_ 134 PEEYRALVPKVDVIFED-----VAQPTQAKILIDNAEVYLKRGGYGMIA 177 (227)
T ss_dssp GGGGTTTCCCEEEEEEC-----CCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cccccccccceEEEEEE-----ccccchHHHHHHHHHHhcccCCeEEEE
Confidence 32 1 2788999874 334456888999999999999998864
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=99.29 E-value=7e-12 Score=108.70 Aligned_cols=104 Identities=13% Similarity=0.156 Sum_probs=85.6
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc-----CCCceeEEE
Q 014247 110 FIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE-----IDEEVDVII 183 (428)
Q Consensus 110 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~-----~~~~~DlVv 183 (428)
...+.+|||++||+|.+++.++.+|+++|++||.+ ..+..+++++...+..++++++++|+.+.- ...+||+|+
T Consensus 39 ~~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIf 118 (182)
T d2fhpa1 39 YFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVL 118 (182)
T ss_dssp CCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred hcCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcceEE
Confidence 35789999999999999999999999999999999 999999999999888888999999987631 236899999
Q ss_pred EecchhhhcchhhHHHHHHHHh--cccccCeEEEcc
Q 014247 184 SEWMGYMLLYESMLGSVITARD--RWLKRGGLILPS 217 (428)
Q Consensus 184 s~~~~~~l~~~~~~~~~l~~~~--~~LkpgG~lv~~ 217 (428)
+++.. ........+..+. .+|+++|.+++.
T Consensus 119 lDPPY----~~~~~~~~l~~i~~~~~L~~~giIi~E 150 (182)
T d2fhpa1 119 LDPPY----AKQEIVSQLEKMLERQLLTNEAVIVCE 150 (182)
T ss_dssp ECCCG----GGCCHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred echhh----hhhHHHHHHHHHHHCCCCCCCEEEEEE
Confidence 98742 1223455555553 589999999865
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.29 E-value=8.4e-12 Score=110.09 Aligned_cols=102 Identities=18% Similarity=0.201 Sum_probs=82.2
Q ss_pred CCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc--C-CCceeEEEEecc
Q 014247 113 GKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE--I-DEEVDVIISEWM 187 (428)
Q Consensus 113 ~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~--~-~~~~DlVvs~~~ 187 (428)
...|||||||+|.++..+|+. .-..++|+|++ .++..|.+++...++.+ +.++.+|+.++. + +.++|.|++...
T Consensus 32 ~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~N-i~~~~~da~~l~~~~~~~~~~~i~i~fP 110 (204)
T d1yzha1 32 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPN-IKLLWVDGSDLTDYFEDGEIDRLYLNFS 110 (204)
T ss_dssp CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSS-EEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhcccc-ceeeecCHHHHhhhccCCceehhccccc
Confidence 458999999999999999987 45589999999 99999999999999875 999999988764 2 388999987542
Q ss_pred hhhhcchh--------hHHHHHHHHhcccccCeEEEccC
Q 014247 188 GYMLLYES--------MLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 188 ~~~l~~~~--------~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
-.|.. .-..+++.+.++|||||.+++.+
T Consensus 111 ---dPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T 146 (204)
T d1yzha1 111 ---DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 146 (204)
T ss_dssp ---CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred ---ccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 11111 12688999999999999998643
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.28 E-value=7.4e-12 Score=111.13 Aligned_cols=106 Identities=19% Similarity=0.215 Sum_probs=84.7
Q ss_pred HHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccc-cCC
Q 014247 100 YRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDV-EID 176 (428)
Q Consensus 100 ~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l-~~~ 176 (428)
....+.+.+...++.+|||||||+|..+..+|+. | .+|+++|.+ .+++.|++++...++. ++.++++|..+. +..
T Consensus 66 ~~a~ml~~L~l~~g~~VLeIGsGsGY~taila~l~g-~~V~~ie~~~~l~~~a~~~l~~~g~~-nv~~~~gd~~~g~~~~ 143 (215)
T d1jg1a_ 66 MVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVK-NVHVILGDGSKGFPPK 143 (215)
T ss_dssp HHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGGCCGGG
T ss_pred hHHHHHHhhccCccceEEEecCCCChhHHHHHHhhC-ceeEEEeccHHHHHHHHHHHHHcCCc-eeEEEECccccCCccc
Confidence 3445566777899999999999999999999986 5 379999999 9999999999999886 499999998774 334
Q ss_pred CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 177 EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 177 ~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
++||.|++.. ..... +.. +...|+|||+++.
T Consensus 144 ~pfD~Iiv~~---a~~~i--p~~----l~~qL~~gGrLv~ 174 (215)
T d1jg1a_ 144 APYDVIIVTA---GAPKI--PEP----LIEQLKIGGKLII 174 (215)
T ss_dssp CCEEEEEECS---BBSSC--CHH----HHHTEEEEEEEEE
T ss_pred CcceeEEeec---ccccC--CHH----HHHhcCCCCEEEE
Confidence 8999999854 33322 233 3456999999984
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=99.22 E-value=2.2e-11 Score=105.65 Aligned_cols=102 Identities=14% Similarity=0.141 Sum_probs=82.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc--CCCceeEEEEecc
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE--IDEEVDVIISEWM 187 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~--~~~~~DlVvs~~~ 187 (428)
..+.+|||++||+|.+++.++.+|+++|+.||.+ ..++.+++++...+.. ++.++.+|+.+.. ...+||+|++++.
T Consensus 42 ~~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~~-~~~ii~~d~~~~l~~~~~~fDlIf~DPP 120 (183)
T d2fpoa1 42 IVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAG-NARVVNSNAMSFLAQKGTPHNIVFVDPP 120 (183)
T ss_dssp HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCC-SEEEECSCHHHHHSSCCCCEEEEEECCS
T ss_pred cchhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhcccc-ceeeeeecccccccccccccCEEEEcCc
Confidence 4678999999999999999999999999999999 9999999999888775 4899999987653 2378999999874
Q ss_pred hhhhcchhhHHHHHHHHh--cccccCeEEEcc
Q 014247 188 GYMLLYESMLGSVITARD--RWLKRGGLILPS 217 (428)
Q Consensus 188 ~~~l~~~~~~~~~l~~~~--~~LkpgG~lv~~ 217 (428)
.. ......++..+. .+|+++|.+++.
T Consensus 121 Y~----~~~~~~~l~~l~~~~~L~~~~iIiiE 148 (183)
T d2fpoa1 121 FR----RGLLEETINLLEDNGWLADEALIYVE 148 (183)
T ss_dssp SS----TTTHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred cc----cchHHHHHHHHHHCCCCCCCeEEEEE
Confidence 21 223455555553 579999999864
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.21 E-value=5.4e-11 Score=104.70 Aligned_cols=78 Identities=33% Similarity=0.375 Sum_probs=68.1
Q ss_pred hccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEE
Q 014247 106 QNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIIS 184 (428)
Q Consensus 106 ~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs 184 (428)
.......|++|||+|||+|.++..++..|+.+|+|+|++ .+++.|+++++.++. +..++.+|+..+. ++||+|++
T Consensus 40 ~~~~dl~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~--~~~~~~~d~~~~~--~~fD~Vi~ 115 (201)
T d1wy7a1 40 YSLGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG--KFKVFIGDVSEFN--SRVDIVIM 115 (201)
T ss_dssp HHTTSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT--SEEEEESCGGGCC--CCCSEEEE
T ss_pred HhcCCCCCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCC--CceEEECchhhhC--CcCcEEEE
Confidence 345567899999999999999999999998899999999 999999999887765 4789999987764 78999999
Q ss_pred ecc
Q 014247 185 EWM 187 (428)
Q Consensus 185 ~~~ 187 (428)
++.
T Consensus 116 nPP 118 (201)
T d1wy7a1 116 NPP 118 (201)
T ss_dssp CCC
T ss_pred cCc
Confidence 874
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.20 E-value=1.8e-11 Score=106.94 Aligned_cols=71 Identities=28% Similarity=0.312 Sum_probs=62.4
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEEecc
Q 014247 109 SFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWM 187 (428)
Q Consensus 109 ~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~~~ 187 (428)
....|++|||+|||+|.+++.++..|+++|+|+|++ .+++.|++++. ++.++++|+.+++ ++||+|++++.
T Consensus 45 ~dl~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~~------~~~~~~~D~~~l~--~~fD~Vi~NPP 116 (197)
T d1ne2a_ 45 GNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG------GVNFMVADVSEIS--GKYDTWIMNPP 116 (197)
T ss_dssp TSSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT------TSEEEECCGGGCC--CCEEEEEECCC
T ss_pred CCCCCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHccc------cccEEEEehhhcC--CcceEEEeCcc
Confidence 457899999999999999999999999899999999 88888887642 4899999998865 78999999874
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=99.20 E-value=5.3e-11 Score=109.05 Aligned_cols=132 Identities=20% Similarity=0.216 Sum_probs=97.2
Q ss_pred hhhhccChhhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEE
Q 014247 87 HEEMIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIV 165 (428)
Q Consensus 87 ~~~~~~d~~r~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~ 165 (428)
....+-.+..++.+.+.+.+.....+..+|||+|||+|..+..+++....+|+++|+| ..+..|+++++.+++.+++.+
T Consensus 85 ~~~vlIPRpeTE~lv~~~~~~~~~~~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i 164 (271)
T d1nv8a_ 85 EEGVFVPRPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFV 164 (271)
T ss_dssp CTTSCCCCTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEE
T ss_pred ecCccCchhhhhhhhhhhhhhhccccccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCCCceeEE
Confidence 3345555667777777777655445567999999999999999988766699999999 999999999999999999999
Q ss_pred EEcccccccC--CCceeEEEEecch--------hhhcchhh---------HHHHHHHHhcccccCeEEEccC
Q 014247 166 LHGRVEDVEI--DEEVDVIISEWMG--------YMLLYESM---------LGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 166 ~~~d~~~l~~--~~~~DlVvs~~~~--------~~l~~~~~---------~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
..+|+.+... .++||+|+|++.- ....+++. +.-+.+-+.++|+|||.+++..
T Consensus 165 ~~~~~~~~~~~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Ei 236 (271)
T d1nv8a_ 165 RKGEFLEPFKEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEI 236 (271)
T ss_dssp EESSTTGGGGGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEEC
T ss_pred eecccccccccccCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEE
Confidence 9999876433 2789999998730 01111211 1222222467899999988643
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.17 E-value=2.2e-11 Score=108.77 Aligned_cols=105 Identities=14% Similarity=0.250 Sum_probs=77.4
Q ss_pred HHHhcc--CCCCCCEEEEEcCCCcHHHHHHHHc----CC---CeEEEEeCh-HHHHHHHHHHHHCCC----CCcEEEEEc
Q 014247 103 AIMQNQ--SFIEGKVVVDVGCGTGILSIFCAQA----GA---KRVYAVDAS-DIAVQANEVVKANNL----TDKVIVLHG 168 (428)
Q Consensus 103 ~i~~~~--~~~~~~~VLDiGcGtG~ls~~la~~----g~---~~V~giD~s-~~~~~a~~~~~~~~~----~~~v~~~~~ 168 (428)
.+.+.+ ...++.+|||||||+|.++..+++. |. .+|+++|.+ ++++.|++++...++ ..++.++++
T Consensus 69 ~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~ 148 (223)
T d1r18a_ 69 FALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEG 148 (223)
T ss_dssp HHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEES
T ss_pred HHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEec
Confidence 344444 5678999999999999999888875 21 379999999 999999887654322 135999999
Q ss_pred ccccccC-CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 169 RVEDVEI-DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 169 d~~~l~~-~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
|..+... .++||+|++.. .+...+ ..+.+.|||||++++
T Consensus 149 d~~~~~~~~~~fD~Iiv~~---a~~~~p------~~l~~~Lk~gG~lV~ 188 (223)
T d1r18a_ 149 DGRKGYPPNAPYNAIHVGA---AAPDTP------TELINQLASGGRLIV 188 (223)
T ss_dssp CGGGCCGGGCSEEEEEECS---CBSSCC------HHHHHTEEEEEEEEE
T ss_pred ccccccccccceeeEEEEe---echhch------HHHHHhcCCCcEEEE
Confidence 9877544 47899999855 333222 235678999999974
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.09 E-value=1.3e-10 Score=103.04 Aligned_cols=105 Identities=17% Similarity=0.318 Sum_probs=82.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc--CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC-------CCcee
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQA--GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI-------DEEVD 180 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~--g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~-------~~~~D 180 (428)
.+.++|||+|||+|..++.+|++ ...+|+++|.+ .+++.|+++++..|+.++|+++.+|..++-. ..+||
T Consensus 55 ~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D 134 (214)
T d2cl5a1 55 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLD 134 (214)
T ss_dssp HCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEE
T ss_pred hCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhcccccccc
Confidence 45689999999999999999986 23599999999 9999999999999999999999999877421 26799
Q ss_pred EEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCC
Q 014247 181 VIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYA 219 (428)
Q Consensus 181 lVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 219 (428)
+|+... .- ........+.+..++|+|||++++...
T Consensus 135 ~ifiD~---~~-~~~~~~~~l~~~~~lLkpGGvIv~Ddv 169 (214)
T d2cl5a1 135 MVFLDH---WK-DRYLPDTLLLEKCGLLRKGTVLLADNV 169 (214)
T ss_dssp EEEECS---CG-GGHHHHHHHHHHTTCEEEEEEEEESCC
T ss_pred eeeecc---cc-cccccHHHHHHHhCccCCCcEEEEeCc
Confidence 999753 11 111123346667789999999887653
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.07 E-value=2.4e-10 Score=101.53 Aligned_cols=114 Identities=15% Similarity=0.110 Sum_probs=90.3
Q ss_pred HHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc
Q 014247 98 ETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-G-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE 174 (428)
Q Consensus 98 ~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~ 174 (428)
..+...+.+. .+.++|||||||+|..++.+|++ . -.+|+++|.+ ...+.|+++++..++.++++++.+|+.+..
T Consensus 48 g~lL~~L~~~---~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l 124 (219)
T d2avda1 48 AQLLANLARL---IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETL 124 (219)
T ss_dssp HHHHHHHHHH---TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHH
T ss_pred HHHHHHHHHc---cCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcc
Confidence 3444444444 56789999999999999999986 2 3499999999 999999999999999999999999976631
Q ss_pred -------CCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCe
Q 014247 175 -------IDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYAT 220 (428)
Q Consensus 175 -------~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 220 (428)
..++||+|+... ........+..+.++|+|||++++....
T Consensus 125 ~~~~~~~~~~~fD~ifiD~------dk~~y~~~~~~~~~lL~~GGvii~Dn~l 171 (219)
T d2avda1 125 DELLAAGEAGTFDVAVVDA------DKENCSAYYERCLQLLRPGGILAVLRVL 171 (219)
T ss_dssp HHHHHTTCTTCEEEEEECS------CSTTHHHHHHHHHHHEEEEEEEEEECCS
T ss_pred hhhhhhcccCCccEEEEeC------CHHHHHHHHHHHHHHhcCCcEEEEeCCc
Confidence 137899999753 2233556677788999999999987653
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.00 E-value=2.4e-09 Score=97.10 Aligned_cols=76 Identities=16% Similarity=0.131 Sum_probs=63.8
Q ss_pred CCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC-------CCceeEE
Q 014247 112 EGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI-------DEEVDVI 182 (428)
Q Consensus 112 ~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~-------~~~~DlV 182 (428)
+..++||+|||+|..+..+++. ...+++|+|++ .+++.|+++++.|++.+++.+++.+.....+ .++||+|
T Consensus 61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i 140 (250)
T d2h00a1 61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 140 (250)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeEE
Confidence 3469999999999999988876 33499999999 9999999999999999999999876544221 2689999
Q ss_pred EEecc
Q 014247 183 ISEWM 187 (428)
Q Consensus 183 vs~~~ 187 (428)
+|++.
T Consensus 141 vsNPP 145 (250)
T d2h00a1 141 MCNPP 145 (250)
T ss_dssp EECCC
T ss_pred EecCc
Confidence 99984
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.98 E-value=2.9e-09 Score=96.10 Aligned_cols=150 Identities=15% Similarity=0.089 Sum_probs=99.1
Q ss_pred HHHHhccC-CCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeChHHHHHHHHHHHHCCCCCcEEEEEcccccccCCCce
Q 014247 102 AAIMQNQS-FIEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEV 179 (428)
Q Consensus 102 ~~i~~~~~-~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~ 179 (428)
+.+.+... .....+|||||||+|.++..++++ ..-+++..|+.+.++ .....++++++.+|+.+- .+ ..
T Consensus 70 ~~l~~~~~~f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~-------~~~~~~ri~~~~gd~~~~-~p-~~ 140 (244)
T d1fp1d2 70 KRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIE-------NAPPLSGIEHVGGDMFAS-VP-QG 140 (244)
T ss_dssp HHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHT-------TCCCCTTEEEEECCTTTC-CC-CE
T ss_pred HHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecchhhhh-------ccCCCCCeEEecCCcccc-cc-cc
Confidence 34444444 345589999999999999999987 334889999875542 344567899999998753 33 45
Q ss_pred eEEEEecchhhhcchh--hHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchhh-h---h--hhhhccCCC--Ccch
Q 014247 180 DVIISEWMGYMLLYES--MLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYSE-S---I--DFWRNVYGI--DMSA 249 (428)
Q Consensus 180 DlVvs~~~~~~l~~~~--~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~-~---~--~~~~~~~~~--~~~~ 249 (428)
|+++... +++... +...+|+++++.|+|||++++....+ +-........ . . .......|. +.++
T Consensus 141 D~~~l~~---vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~v~---~~~~~~~~~~~~~~~~d~~m~~~~~g~ert~~e 214 (244)
T d1fp1d2 141 DAMILKA---VCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFIL---PEEPNTSEESKLVSTLDNLMFITVGGRERTEKQ 214 (244)
T ss_dssp EEEEEES---SGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEE---CSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHH
T ss_pred eEEEEeh---hhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEEe---cCCCCCchHHHHHHHHHHHHHhhCCCcCCCHHH
Confidence 9999765 454443 36688999999999999998865422 1111111110 0 0 001112232 4678
Q ss_pred hHHHHHhcCCCCceEEe
Q 014247 250 MMPLAKQCAFEEPSVET 266 (428)
Q Consensus 250 l~~~l~~~Gf~~~~~~~ 266 (428)
+..+++++||+.+++..
T Consensus 215 ~~~ll~~AGF~~v~v~~ 231 (244)
T d1fp1d2 215 YEKLSKLSGFSKFQVAC 231 (244)
T ss_dssp HHHHHHHTTCSEEEEEE
T ss_pred HHHHHHHcCCCceEEEe
Confidence 99999999999877653
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=98.94 E-value=2.5e-09 Score=92.33 Aligned_cols=104 Identities=19% Similarity=0.174 Sum_probs=81.5
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCC-cEEEEEcccccccC----CCceeEEEE
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTD-KVIVLHGRVEDVEI----DEEVDVIIS 184 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~-~v~~~~~d~~~l~~----~~~~DlVvs 184 (428)
..+.+|||+.||||.+++.++.+|+++|+.||.+ ..+...+++++..+..+ ...++..|+.+... ..+||+|++
T Consensus 42 ~~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFl 121 (183)
T d2ifta1 42 IHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL 121 (183)
T ss_dssp HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred cccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEe
Confidence 4678999999999999999999999999999999 99999999999887754 57777777654321 257999999
Q ss_pred ecchhhhcchhhHHHHHHHHh--cccccCeEEEccC
Q 014247 185 EWMGYMLLYESMLGSVITARD--RWLKRGGLILPSY 218 (428)
Q Consensus 185 ~~~~~~l~~~~~~~~~l~~~~--~~LkpgG~lv~~~ 218 (428)
++.-. ......++..+. .+|+++|.+++..
T Consensus 122 DPPY~----~~~~~~~l~~l~~~~~L~~~~liiiE~ 153 (183)
T d2ifta1 122 DPPFH----FNLAEQAISLLCENNWLKPNALIYVET 153 (183)
T ss_dssp CCCSS----SCHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred chhHh----hhhHHHHHHHHHHhCCcCCCcEEEEEe
Confidence 87421 123455566553 5899999999753
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.93 E-value=1.1e-09 Score=97.78 Aligned_cols=113 Identities=18% Similarity=0.145 Sum_probs=90.1
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-C-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc-
Q 014247 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-G-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE- 174 (428)
Q Consensus 99 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~- 174 (428)
.+...+.+. .+.++||+||+++|..++.+|++ + ..+|+.+|.+ ..+..|++++.+.|+.++|+++.+++.+.-
T Consensus 49 ~~L~~L~~~---~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~ 125 (227)
T d1susa1 49 QFLSMLLKL---INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLD 125 (227)
T ss_dssp HHHHHHHHH---HTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHH
T ss_pred HHHHHHHHh---cCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHH
Confidence 344444444 46789999999999999999986 2 3599999999 999999999999999999999999987641
Q ss_pred -------CCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCe
Q 014247 175 -------IDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYAT 220 (428)
Q Consensus 175 -------~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 220 (428)
..++||+|+... ........++.+.++|+|||.+++...-
T Consensus 126 ~l~~~~~~~~~fD~iFiDa------~k~~y~~~~e~~~~ll~~gGiii~DNvl 172 (227)
T d1susa1 126 EMIKDEKNHGSYDFIFVDA------DKDNYLNYHKRLIDLVKVGGVIGYDNTL 172 (227)
T ss_dssp HHHHCGGGTTCBSEEEECS------CSTTHHHHHHHHHHHBCTTCCEEEETTT
T ss_pred HHHhccccCCceeEEEecc------chhhhHHHHHHHHhhcCCCcEEEEccCC
Confidence 136899999754 2233567777888999999999987653
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.91 E-value=1.7e-09 Score=93.89 Aligned_cols=111 Identities=20% Similarity=0.256 Sum_probs=87.0
Q ss_pred HHHhccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC-----
Q 014247 103 AIMQNQSFIEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI----- 175 (428)
Q Consensus 103 ~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~----- 175 (428)
.+...+...++..+||++||+|..+..+++. +..+|+|+|.+ .+++.|++++... .+++.++++++.++..
T Consensus 14 evi~~l~~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~--~~r~~~~~~~f~~~~~~~~~~ 91 (192)
T d1m6ya2 14 EVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEF--SDRVSLFKVSYREADFLLKTL 91 (192)
T ss_dssp HHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGG--TTTEEEEECCGGGHHHHHHHT
T ss_pred HHHHhhCCCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccc--cccccchhHHHhhHHHHHHHc
Confidence 3455566788999999999999999999886 44599999999 9999999987664 4579999999877532
Q ss_pred -CCceeEEEEecchhhh-------cchhhHHHHHHHHhcccccCeEEEc
Q 014247 176 -DEEVDVIISEWMGYML-------LYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 176 -~~~~DlVvs~~~~~~l-------~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
.++||.|+.++ |..- .........|..+.++|+|||++++
T Consensus 92 ~~~~vdgIl~Dl-GvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~i 139 (192)
T d1m6ya2 92 GIEKVDGILMDL-GVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVV 139 (192)
T ss_dssp TCSCEEEEEEEC-SCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEE
T ss_pred CCCCcceeeecc-chhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeee
Confidence 27899998764 2111 1234577889999999999999874
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.82 E-value=2e-08 Score=87.32 Aligned_cols=118 Identities=14% Similarity=0.124 Sum_probs=75.0
Q ss_pred HHHHHHHHhccCCCCCCEEEEEcCCCcH----HHHHHHHcC----C-CeEEEEeCh-HHHHHHHHHH-------------
Q 014247 98 ETYRAAIMQNQSFIEGKVVVDVGCGTGI----LSIFCAQAG----A-KRVYAVDAS-DIAVQANEVV------------- 154 (428)
Q Consensus 98 ~~~~~~i~~~~~~~~~~~VLDiGcGtG~----ls~~la~~g----~-~~V~giD~s-~~~~~a~~~~------------- 154 (428)
+.+.+.+... .+..+||++|||+|- +++.+.+.. . -+|+|+|++ ..++.|++-.
T Consensus 13 ~~L~~~~~~~---~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~ 89 (193)
T d1af7a2 13 PILAEHARRR---HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQ 89 (193)
T ss_dssp HHHHHHHHHS---CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHH
T ss_pred HHHHHHHhcc---CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHH
Confidence 3444444432 455699999999997 445455431 1 179999999 8888886421
Q ss_pred -HH----CCC------------CCcEEEEEccccccc--CCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEE
Q 014247 155 -KA----NNL------------TDKVIVLHGRVEDVE--IDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLIL 215 (428)
Q Consensus 155 -~~----~~~------------~~~v~~~~~d~~~l~--~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv 215 (428)
.. .+. ...+.+...+..... ..++||+|+|..+...+ .......+++.+.+.|+|||.|+
T Consensus 90 ~~~yf~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf-~~~~~~~vl~~l~~~L~pGG~L~ 168 (193)
T d1af7a2 90 LQRYFMRGTGPHEGLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYF-DKTTQEDILRRFVPLLKPDGLLF 168 (193)
T ss_dssp HHHHEEECCTTSCSEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGS-CHHHHHHHHHHHGGGEEEEEEEE
T ss_pred HhhceeecCCCccceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhc-CHHHHHHHHHHHHHHhCCCcEEE
Confidence 00 000 012344444443322 23789999997744333 34457899999999999999999
Q ss_pred ccCC
Q 014247 216 PSYA 219 (428)
Q Consensus 216 ~~~~ 219 (428)
+...
T Consensus 169 lG~s 172 (193)
T d1af7a2 169 AGHS 172 (193)
T ss_dssp ECTT
T ss_pred EecC
Confidence 7654
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.79 E-value=1.4e-08 Score=91.66 Aligned_cols=141 Identities=12% Similarity=0.164 Sum_probs=94.2
Q ss_pred CCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeChHHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEEecchhh
Q 014247 112 EGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWMGYM 190 (428)
Q Consensus 112 ~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~~~~~~ 190 (428)
...+|||||||+|.++..++++ ..-+++..|..+.++. .+..++++++.+|+.+- . ..+|+++... +
T Consensus 80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~-------~~~~~rv~~~~gD~f~~-~-p~aD~~~l~~---v 147 (244)
T d1fp2a2 80 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVEN-------LSGSNNLTYVGGDMFTS-I-PNADAVLLKY---I 147 (244)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTT-------CCCBTTEEEEECCTTTC-C-CCCSEEEEES---C
T ss_pred CceEEEEecCCccHHHHHHHHhCCCCeEEEecCHHHHHh-------CcccCceEEEecCcccC-C-CCCcEEEEEe---e
Confidence 3478999999999999999987 3348999999865433 34567899999998763 2 3689999766 5
Q ss_pred hcchhh--HHHHHHHHhcccccC---eEEEccCCeeeEeecCCccchhhhhhhh-----hccCC--CCcchhHHHHHhcC
Q 014247 191 LLYESM--LGSVITARDRWLKRG---GLILPSYATLYMAPVTHPDRYSESIDFW-----RNVYG--IDMSAMMPLAKQCA 258 (428)
Q Consensus 191 l~~~~~--~~~~l~~~~~~Lkpg---G~lv~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~--~~~~~l~~~l~~~G 258 (428)
+++..+ ...+|+++++.|+|| |++++....+ +-............+ .-..| .+.+++.++++++|
T Consensus 148 LHdw~d~~~~~iL~~~~~al~pgg~~~~lli~e~~~---~~~~~~~~~~~~~~~~dl~m~~~~G~ert~~e~~~ll~~AG 224 (244)
T d1fp2a2 148 LHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVI---DKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAG 224 (244)
T ss_dssp GGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEE---CTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHHHTT
T ss_pred cccCChHHHHHHHHHHHHHcCcccCCcEEEEEEeec---CCCCCCchHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHcC
Confidence 554443 567899999999998 6777654321 111111000000000 01122 24678999999999
Q ss_pred CCCceEEee
Q 014247 259 FEEPSVETI 267 (428)
Q Consensus 259 f~~~~~~~~ 267 (428)
|+...+...
T Consensus 225 f~~~~i~~~ 233 (244)
T d1fp2a2 225 FQHYKISPL 233 (244)
T ss_dssp CCEEEEEEE
T ss_pred CceEEEEEC
Confidence 998776543
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=98.72 E-value=4.6e-08 Score=85.52 Aligned_cols=99 Identities=18% Similarity=0.244 Sum_probs=84.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEEecch
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWMG 188 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~~~~ 188 (428)
.++.+|||+|+|.|.-++.+|-. ...+|+.+|.+ .-+...++.+...++.+ +++++.+++++....+||+|+|..+
T Consensus 64 ~~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~n-v~v~~~R~E~~~~~~~fD~V~sRA~- 141 (207)
T d1jsxa_ 64 LQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLEN-IEPVQSRVEEFPSEPPFDGVISRAF- 141 (207)
T ss_dssp CCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSS-EEEEECCTTTSCCCSCEEEEECSCS-
T ss_pred hcCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcc-eeeeccchhhhccccccceehhhhh-
Confidence 46789999999999999988876 34599999999 88888888888888864 9999999999876678999999763
Q ss_pred hhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 189 YMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 189 ~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
..+..++.-...+++++|.+++-
T Consensus 142 ------~~~~~ll~~~~~~l~~~g~~~~~ 164 (207)
T d1jsxa_ 142 ------ASLNDMVSWCHHLPGEQGRFYAL 164 (207)
T ss_dssp ------SSHHHHHHHHTTSEEEEEEEEEE
T ss_pred ------cCHHHHHHHHHHhcCCCcEEEEE
Confidence 23778888889999999998854
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=98.70 E-value=6.2e-08 Score=92.34 Aligned_cols=114 Identities=17% Similarity=0.186 Sum_probs=87.3
Q ss_pred hhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccc
Q 014247 95 VRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDV 173 (428)
Q Consensus 95 ~r~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l 173 (428)
.-.+.+.+.+.+.+...++.+|||+-||+|.+++.+|+. +++|+|+|.+ ..++.|+++++.|++.+ ++|+.++.++.
T Consensus 195 ~~~e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~-~~~V~gvE~~~~ai~~A~~na~~n~i~n-~~~~~~~~~~~ 272 (358)
T d1uwva2 195 GVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARLNGLQN-VTFYHENLEED 272 (358)
T ss_dssp HHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEECCTTSC
T ss_pred hhhhHHHHHHHHhhccCCCceEEEecccccccchhcccc-ccEEEeccCcHHHHHHHHHhHHhccccc-ceeeecchhhh
Confidence 345666777777777778899999999999999999997 5699999999 99999999999999975 99999998764
Q ss_pred cC-----CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 174 EI-----DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 174 ~~-----~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
.. ..++|+|+.++.-..+ ..++..+.+ ++|.-+++++
T Consensus 273 ~~~~~~~~~~~d~vilDPPR~G~------~~~~~~l~~-~~~~~ivYVS 314 (358)
T d1uwva2 273 VTKQPWAKNGFDKVLLDPARAGA------AGVMQQIIK-LEPIRIVYVS 314 (358)
T ss_dssp CSSSGGGTTCCSEEEECCCTTCC------HHHHHHHHH-HCCSEEEEEE
T ss_pred hhhhhhhhccCceEEeCCCCccH------HHHHHHHHH-cCCCEEEEEe
Confidence 22 2679999998754443 233444443 3566555543
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.68 E-value=4.7e-08 Score=87.41 Aligned_cols=84 Identities=17% Similarity=0.231 Sum_probs=68.1
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC-
Q 014247 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID- 176 (428)
Q Consensus 99 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~- 176 (428)
...+.|.+.+...++++|||||||+|.++..+++.+. +|++||++ .++..++++.... ++++++++|+.+++++
T Consensus 8 ~i~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~~~-~v~avE~D~~l~~~l~~~~~~~---~n~~i~~~D~l~~~~~~ 83 (235)
T d1qama_ 8 HNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCN-FVTAIEIDHKLCKTTENKLVDH---DNFQVLNKDILQFKFPK 83 (235)
T ss_dssp HHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHSS-EEEEECSCHHHHHHHHHHTTTC---CSEEEECCCGGGCCCCS
T ss_pred HHHHHHHHhcCCCCCCeEEEECCCchHHHHHHHhCcC-ceEEEeeccchHHHHHHHhhcc---cchhhhhhhhhhccccc
Confidence 4566777877788999999999999999999999854 99999999 8888887765332 4699999999998765
Q ss_pred CceeEEEEec
Q 014247 177 EEVDVIISEW 186 (428)
Q Consensus 177 ~~~DlVvs~~ 186 (428)
.....|+++.
T Consensus 84 ~~~~~vv~NL 93 (235)
T d1qama_ 84 NQSYKIFGNI 93 (235)
T ss_dssp SCCCEEEEEC
T ss_pred cccceeeeee
Confidence 3344677765
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.67 E-value=6.3e-08 Score=87.17 Aligned_cols=151 Identities=19% Similarity=0.143 Sum_probs=96.0
Q ss_pred HHHhccCC-CCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeChHHHHHHHHHHHHCCCCCcEEEEEcccccccCCCcee
Q 014247 103 AIMQNQSF-IEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVD 180 (428)
Q Consensus 103 ~i~~~~~~-~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~D 180 (428)
.+...... ....+|||||||+|.++..++++ ..-++++.|..+.++. ....++++++.+|+.+- .+ ..|
T Consensus 71 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~-------~~~~~r~~~~~~d~~~~-~P-~ad 141 (243)
T d1kyza2 71 KILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIED-------APSYPGVEHVGGDMFVS-IP-KAD 141 (243)
T ss_dssp HHHHHCCTTSSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTTTTT-------CCCCTTEEEEECCTTTC-CC-CCS
T ss_pred HHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHhhhh-------cccCCceEEeccccccc-CC-Ccc
Confidence 33343333 33579999999999999999997 3348999999854432 33456899999998652 33 356
Q ss_pred EEEEecchhhhcch--hhHHHHHHHHhcccccCeEEEccCCeeeEeecCCccchh-hh---hhh--hh-ccCCC--Ccch
Q 014247 181 VIISEWMGYMLLYE--SMLGSVITARDRWLKRGGLILPSYATLYMAPVTHPDRYS-ES---IDF--WR-NVYGI--DMSA 249 (428)
Q Consensus 181 lVvs~~~~~~l~~~--~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~-~~---~~~--~~-~~~~~--~~~~ 249 (428)
+++... +++.. .+...+|+++++.|+|||++++....+. -....... .. ... .. ...|. ..++
T Consensus 142 ~~~l~~---vlh~~~d~~~~~iL~~~~~al~pgg~~li~d~~~~---~~~~~~~~~~~~~~~d~~ml~~~~~g~ert~~e 215 (243)
T d1kyza2 142 AVFMKW---ICHDWSDEHCLKFLKNCYEALPDNGKVIVAECILP---VAPDSSLATKGVVHIDVIMLAHNPGGKERTQKE 215 (243)
T ss_dssp CEECSS---SSTTSCHHHHHHHHHHHHHHCCSSSCEEEEECEEC---SSCCCCHHHHHHHHHHHHHHHHCSSCCCEEHHH
T ss_pred eEEEEE---EeecCCHHHHHHHHHHHHHhcCCCceEEEEEEEec---CCCCCchhhHHHHHHHHHHHhhCCCCCcCCHHH
Confidence 666433 33333 4577889999999999998887654321 11111111 00 000 00 11232 3678
Q ss_pred hHHHHHhcCCCCceEEeec
Q 014247 250 MMPLAKQCAFEEPSVETIT 268 (428)
Q Consensus 250 l~~~l~~~Gf~~~~~~~~~ 268 (428)
+..+++++||+.+++....
T Consensus 216 ~~~ll~~AGf~~vkv~~~~ 234 (243)
T d1kyza2 216 FEDLAKGAGFQGFKVHCNA 234 (243)
T ss_dssp HHHHHHHHCCSCEEEEEEE
T ss_pred HHHHHHHcCCCcEEEEEeC
Confidence 9999999999998876443
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.61 E-value=4.1e-08 Score=90.03 Aligned_cols=107 Identities=17% Similarity=0.142 Sum_probs=81.2
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHC---------CCCCcEEEEEcccccc-cCCCce
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKAN---------NLTDKVIVLHGRVEDV-EIDEEV 179 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~---------~~~~~v~~~~~d~~~l-~~~~~~ 179 (428)
.+.++||.||+|.|..+..+.+.+..+|++||++ .+++.|++.+..+ ...++++++.+|+... ...++|
T Consensus 71 ~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~y 150 (276)
T d1mjfa_ 71 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGF 150 (276)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCE
T ss_pred CCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCCC
Confidence 5668999999999999999888877899999999 8999998765322 2346899999998764 224789
Q ss_pred eEEEEecchhhhc-chhhHHHHHHHHhcccccCeEEEcc
Q 014247 180 DVIISEWMGYMLL-YESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 180 DlVvs~~~~~~l~-~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
|+|+++.....-. ..-.-.++++.+++.|+|||+++..
T Consensus 151 DvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q 189 (276)
T d1mjfa_ 151 DVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQ 189 (276)
T ss_dssp EEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEE
T ss_pred CEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEe
Confidence 9999976321111 1111367899999999999999854
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.56 E-value=6.7e-08 Score=90.01 Aligned_cols=108 Identities=16% Similarity=0.103 Sum_probs=81.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHC--C--CCCcEEEEEcccccc--cCCCceeEE
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKAN--N--LTDKVIVLHGRVEDV--EIDEEVDVI 182 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~--~--~~~~v~~~~~d~~~l--~~~~~~DlV 182 (428)
...++||.||.|.|..+..+++. +..+|++||++ .+++.|++.+... + -.++++++.+|+.+. ..+++||+|
T Consensus 76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI 155 (312)
T d1uira_ 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (312)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEE
Confidence 45689999999999999999887 46699999999 8999998876431 1 246799999998875 234789999
Q ss_pred EEecchhhhc----chhhHHHHHHHHhcccccCeEEEccC
Q 014247 183 ISEWMGYMLL----YESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 183 vs~~~~~~l~----~~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
++........ ....-.++++.+++.|+|||+++...
T Consensus 156 i~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~ 195 (312)
T d1uira_ 156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (312)
T ss_dssp EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEec
Confidence 9876321111 11123678999999999999998643
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.55 E-value=9.6e-08 Score=87.94 Aligned_cols=108 Identities=15% Similarity=0.080 Sum_probs=81.2
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCC--C-CCcEEEEEcccccccC--CCceeEEE
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANN--L-TDKVIVLHGRVEDVEI--DEEVDVII 183 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~--~-~~~v~~~~~d~~~l~~--~~~~DlVv 183 (428)
...++||-||.|.|..+..+++. +..+|++||++ .+++.|++.+..+. + .++++++.+|+.+.-. +++||+|+
T Consensus 88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 167 (295)
T d1inla_ 88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 167 (295)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEE
Confidence 45689999999999999999987 46799999999 89999988665432 2 4689999999877532 37899999
Q ss_pred Eecchhhh--cchhhHHHHHHHHhcccccCeEEEccC
Q 014247 184 SEWMGYML--LYESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 184 s~~~~~~l--~~~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
++...... ...-.-.++++.+++.|+|||+++...
T Consensus 168 ~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~ 204 (295)
T d1inla_ 168 IDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAET 204 (295)
T ss_dssp EEC----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEec
Confidence 97643211 111124688999999999999998653
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.51 E-value=1.6e-07 Score=88.33 Aligned_cols=114 Identities=18% Similarity=0.107 Sum_probs=80.8
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc----C--CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccc
Q 014247 101 RAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA----G--AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDV 173 (428)
Q Consensus 101 ~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~----g--~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l 173 (428)
...+...+...++.+|||.|||+|.+...+.+. + ..+++|+|++ .++..|+.++...+.. ..+.++|....
T Consensus 106 ~~l~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~--~~~~~~d~~~~ 183 (328)
T d2f8la1 106 AYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQK--MTLLHQDGLAN 183 (328)
T ss_dssp HHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCC--CEEEESCTTSC
T ss_pred HHHHHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhh--hhhhccccccc
Confidence 344444445567789999999999998887653 1 2279999999 8888888887766553 56777787665
Q ss_pred cCCCceeEEEEecchhhhcc---------------hhhHHHHHHHHhcccccCeEEEc
Q 014247 174 EIDEEVDVIISEWMGYMLLY---------------ESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 174 ~~~~~~DlVvs~~~~~~l~~---------------~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
....+||+|++++....... ......++..+.++|+|||++++
T Consensus 184 ~~~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~ 241 (328)
T d2f8la1 184 LLVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFF 241 (328)
T ss_dssp CCCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEE
T ss_pred cccccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEE
Confidence 55589999999974211110 01123468888899999998764
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.46 E-value=3.9e-07 Score=83.08 Aligned_cols=86 Identities=20% Similarity=0.326 Sum_probs=71.6
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCC
Q 014247 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDE 177 (428)
Q Consensus 99 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~ 177 (428)
...+.|.+.+...++..|||||+|+|.++..+++.+. +|++||++ .++...++.+......++++++.+|+.+.+.+
T Consensus 8 ~i~~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~~~-~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~~- 85 (278)
T d1zq9a1 8 LIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP- 85 (278)
T ss_dssp HHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC-
T ss_pred HHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhcCC-cEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhhh-
Confidence 3455666666777899999999999999999999865 99999999 99999888877766667899999999887765
Q ss_pred ceeEEEEec
Q 014247 178 EVDVIISEW 186 (428)
Q Consensus 178 ~~DlVvs~~ 186 (428)
.++.||++.
T Consensus 86 ~~~~vV~NL 94 (278)
T d1zq9a1 86 FFDTCVANL 94 (278)
T ss_dssp CCSEEEEEC
T ss_pred hhhhhhcch
Confidence 456788875
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.41 E-value=5.1e-07 Score=82.97 Aligned_cols=108 Identities=14% Similarity=0.107 Sum_probs=82.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHC---CCCCcEEEEEccccccc--C-CCceeEE
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKAN---NLTDKVIVLHGRVEDVE--I-DEEVDVI 182 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~---~~~~~v~~~~~d~~~l~--~-~~~~DlV 182 (428)
...++||-||.|.|..+..+.+. +.++|+.+|++ .+++.+++.+..+ --..+++++.+|..+.- . .++||+|
T Consensus 79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvI 158 (290)
T d1xj5a_ 79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 158 (290)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEE
Confidence 45679999999999999999987 56799999999 9999998865432 12468999999977642 2 2689999
Q ss_pred EEecchhhh-cchhhHHHHHHHHhcccccCeEEEccC
Q 014247 183 ISEWMGYML-LYESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 183 vs~~~~~~l-~~~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
+........ ...-.-.++++.+++.|+|||+++...
T Consensus 159 i~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~ 195 (290)
T d1xj5a_ 159 IVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQA 195 (290)
T ss_dssp EECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEec
Confidence 997632111 111224678999999999999999654
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=98.40 E-value=8.8e-07 Score=78.67 Aligned_cols=98 Identities=20% Similarity=0.245 Sum_probs=81.6
Q ss_pred CCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC----CCceeEEEEe
Q 014247 112 EGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI----DEEVDVIISE 185 (428)
Q Consensus 112 ~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~----~~~~DlVvs~ 185 (428)
.+.+|+|||+|.|.-++.+|-. +..+|+.+|.+ .-+...+..+..-++.+ +.+++..++++.. .++||+|+|.
T Consensus 70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n-~~i~~~R~E~~~~~~~~~~~~D~v~sR 148 (239)
T d1xdza_ 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLEN-TTFCHDRAETFGQRKDVRESYDIVTAR 148 (239)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSS-EEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCC-cEEEeehhhhccccccccccceEEEEh
Confidence 5679999999999999888874 55699999999 88888888888888875 8999999987643 3689999997
Q ss_pred cchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 186 WMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 186 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
.+ ..+..++.-...++++||.+++-
T Consensus 149 Av-------a~l~~ll~~~~~~l~~~g~~i~~ 173 (239)
T d1xdza_ 149 AV-------ARLSVLSELCLPLVKKNGLFVAL 173 (239)
T ss_dssp CC-------SCHHHHHHHHGGGEEEEEEEEEE
T ss_pred hh-------hCHHHHHHHHhhhcccCCEEEEE
Confidence 63 24778888999999999998853
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.40 E-value=1.2e-08 Score=91.73 Aligned_cols=90 Identities=17% Similarity=0.298 Sum_probs=69.5
Q ss_pred hhccChhhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEE
Q 014247 89 EMIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLH 167 (428)
Q Consensus 89 ~~~~d~~r~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~ 167 (428)
.++.|..- .+.|.+.+...++.+|||||||+|.++..+++.+. +|+|||++ .+++.++++.. ...++++++
T Consensus 10 nFL~d~~i----i~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~~~-~v~aIE~D~~l~~~l~~~~~---~~~n~~ii~ 81 (245)
T d1yuba_ 10 NFLTSEKV----LNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISK-QVTSIELDSHLFNLSSEKLK---LNTRVTLIH 81 (245)
T ss_dssp CBCCCTTT----HHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHSS-EEEESSSSCSSSSSSSCTTT---TCSEEEECC
T ss_pred cccCCHHH----HHHHHHhcCCCCCCeEEEECCCccHHHHHHHhhcC-ceeEeeecccchhhhhhhhh---hccchhhhh
Confidence 34555433 44566667778899999999999999999999854 99999999 88877665432 235799999
Q ss_pred cccccccCC-CceeEEEEec
Q 014247 168 GRVEDVEID-EEVDVIISEW 186 (428)
Q Consensus 168 ~d~~~l~~~-~~~DlVvs~~ 186 (428)
+|+.+++.+ ..++.|+++.
T Consensus 82 ~D~l~~~~~~~~~~~vv~NL 101 (245)
T d1yuba_ 82 QDILQFQFPNKQRYKIVGNI 101 (245)
T ss_dssp SCCTTTTCCCSSEEEEEEEC
T ss_pred hhhhccccccceeeeEeeee
Confidence 999998876 5667788775
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.38 E-value=3.5e-07 Score=83.83 Aligned_cols=107 Identities=16% Similarity=0.121 Sum_probs=80.2
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHC---CCCCcEEEEEccccccc--CCCceeEEE
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKAN---NLTDKVIVLHGRVEDVE--IDEEVDVII 183 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~---~~~~~v~~~~~d~~~l~--~~~~~DlVv 183 (428)
...++||-||.|.|..+..+.+. +..+|+.+|++ .+++.|++.+..+ --..+++++.+|+...- ..++||+|+
T Consensus 77 ~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi 156 (285)
T d2o07a1 77 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 156 (285)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred cCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEE
Confidence 45689999999999999999987 57799999999 9999998876432 12468999999987642 247899999
Q ss_pred Eecchhhh-cchhhHHHHHHHHhcccccCeEEEcc
Q 014247 184 SEWMGYML-LYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 184 s~~~~~~l-~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
++.....- .....-.++++.+++.|+|||+++..
T Consensus 157 ~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q 191 (285)
T d2o07a1 157 TDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQ 191 (285)
T ss_dssp EECC-----------CHHHHHHHHHEEEEEEEEEE
T ss_pred EcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEe
Confidence 97632111 11112456789999999999999864
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.36 E-value=2.1e-07 Score=86.02 Aligned_cols=108 Identities=17% Similarity=0.100 Sum_probs=78.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCC--C-CCcEEEEEccccccc--CCCceeEEE
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANN--L-TDKVIVLHGRVEDVE--IDEEVDVII 183 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~--~-~~~v~~~~~d~~~l~--~~~~~DlVv 183 (428)
...++||-||.|.|..+..+.+. +..+|+.+|++ .+++.|++.+..+. + ..+++++.+|..+.- ..++||+|+
T Consensus 105 ~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII 184 (312)
T d2b2ca1 105 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 184 (312)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEE
Confidence 45689999999999999999987 45799999999 89999988764432 1 368999999987742 247899999
Q ss_pred Eecchhhhc-chhhHHHHHHHHhcccccCeEEEccC
Q 014247 184 SEWMGYMLL-YESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 184 s~~~~~~l~-~~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
++....... ....-.++++.+++.|+|||+++...
T Consensus 185 ~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~ 220 (312)
T d2b2ca1 185 TDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG 220 (312)
T ss_dssp ECCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred EcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEec
Confidence 976322111 11225678999999999999999654
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.36 E-value=1.2e-06 Score=76.89 Aligned_cols=108 Identities=18% Similarity=0.142 Sum_probs=76.9
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc--CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC
Q 014247 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA--GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI 175 (428)
Q Consensus 99 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~ 175 (428)
...+.+...+...++.+|||.|||+|.+...+.+. ...+++|+|++ ..+ .+.....++++|......
T Consensus 6 ~i~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~----------~~~~~~~~~~~~~~~~~~ 75 (223)
T d2ih2a1 6 EVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKAL----------DLPPWAEGILADFLLWEP 75 (223)
T ss_dssp HHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTC----------CCCTTEEEEESCGGGCCC
T ss_pred HHHHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHH----------hhcccceeeeeehhcccc
Confidence 45566777777788999999999999988877664 34579999999 432 122346888888877766
Q ss_pred CCceeEEEEecchhhhcc--------------------------hhhHHHHHHHHhcccccCeEEEc
Q 014247 176 DEEVDVIISEWMGYMLLY--------------------------ESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 176 ~~~~DlVvs~~~~~~l~~--------------------------~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
..+||+|++++....... ......++....++|+|||++.+
T Consensus 76 ~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~ 142 (223)
T d2ih2a1 76 GEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVF 142 (223)
T ss_dssp SSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEE
T ss_pred ccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEE
Confidence 689999999873211100 00124556777889999998764
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.36 E-value=6.2e-07 Score=81.73 Aligned_cols=108 Identities=16% Similarity=0.094 Sum_probs=82.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHC--CC-CCcEEEEEccccccc--CCCceeEEE
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKAN--NL-TDKVIVLHGRVEDVE--IDEEVDVII 183 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~--~~-~~~v~~~~~d~~~l~--~~~~~DlVv 183 (428)
...++||-||.|.|..+..+.+. +.++|+.+|++ .+++.|++.+..+ .+ ..+++++.+|....- .+++||+|+
T Consensus 74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi 153 (274)
T d1iy9a_ 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (274)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEE
Confidence 45689999999999999999986 67799999999 8999998876432 12 457999999987642 247899999
Q ss_pred Eecchhhhc-chhhHHHHHHHHhcccccCeEEEccC
Q 014247 184 SEWMGYMLL-YESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 184 s~~~~~~l~-~~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
.+.....-. ..-.-.++++.+++.|+|||+++...
T Consensus 154 ~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~ 189 (274)
T d1iy9a_ 154 VDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT 189 (274)
T ss_dssp ESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred EcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEec
Confidence 976321111 11125678999999999999998643
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.26 E-value=8.1e-07 Score=84.48 Aligned_cols=100 Identities=22% Similarity=0.191 Sum_probs=79.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHH-cCCCeEEEEeCh-HHHHHHHHHHHHCCCCC--------------cEEEEEccccccc
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQ-AGAKRVYAVDAS-DIAVQANEVVKANNLTD--------------KVIVLHGRVEDVE 174 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~-~g~~~V~giD~s-~~~~~a~~~~~~~~~~~--------------~v~~~~~d~~~l~ 174 (428)
.++.+|||..||+|..++..|+ .|+++|++.|+| ..++.++++++.|+..+ .+.+.+.|+..+.
T Consensus 44 ~~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~ 123 (375)
T d2dula1 44 LNPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLM 123 (375)
T ss_dssp HCCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHH
T ss_pred hCCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhh
Confidence 3678999999999999996655 588899999999 99999999999997653 3666777765442
Q ss_pred C--CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 175 I--DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 175 ~--~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
. .+.||+|..++++ .+..+++.+.+.++.||.|.++
T Consensus 124 ~~~~~~fDvIDiDPfG-------s~~pfldsAi~a~~~~Gll~vT 161 (375)
T d2dula1 124 AERHRYFHFIDLDPFG-------SPMEFLDTALRSAKRRGILGVT 161 (375)
T ss_dssp HHSTTCEEEEEECCSS-------CCHHHHHHHHHHEEEEEEEEEE
T ss_pred HhhcCcCCcccCCCCC-------CcHHHHHHHHHHhccCCEEEEE
Confidence 2 3679999988743 2445777777889999999875
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.19 E-value=4.2e-06 Score=77.70 Aligned_cols=116 Identities=18% Similarity=0.169 Sum_probs=86.7
Q ss_pred hccCCCCCCEEEEEcCCCcHHHHHHHHc--CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC-CCceeE
Q 014247 106 QNQSFIEGKVVVDVGCGTGILSIFCAQA--GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI-DEEVDV 181 (428)
Q Consensus 106 ~~~~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~-~~~~Dl 181 (428)
..+...+|.+|||+.||.|.=+..++.. +...++++|.+ .-+...++++++.+..+ +.+...|...++. ...||.
T Consensus 110 ~~l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~-i~~~~~d~~~~~~~~~~fD~ 188 (313)
T d1ixka_ 110 VALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLN-VILFHSSSLHIGELNVEFDK 188 (313)
T ss_dssp HHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCS-EEEESSCGGGGGGGCCCEEE
T ss_pred hcccCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhc-cccccccccccccccccccE
Confidence 3445689999999999999988888765 34479999999 88888888888888865 7778788776644 478999
Q ss_pred EEEecchhhhc------------chh-------hHHHHHHHHhcccccCeEEEccCCeee
Q 014247 182 IISEWMGYMLL------------YES-------MLGSVITARDRWLKRGGLILPSYATLY 222 (428)
Q Consensus 182 Vvs~~~~~~l~------------~~~-------~~~~~l~~~~~~LkpgG~lv~~~~~~~ 222 (428)
|+.....+... ... ....+|....++|||||.+|-+++++.
T Consensus 189 ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~ 248 (313)
T d1ixka_ 189 ILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLE 248 (313)
T ss_dssp EEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCC
T ss_pred EEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCC
Confidence 99965321111 011 134567888899999999998777653
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=98.17 E-value=4e-06 Score=71.33 Aligned_cols=96 Identities=25% Similarity=0.305 Sum_probs=69.0
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHc--CCCeEEEEeChHHHHHHHHHHHHCCCCCcEEEEEccccccc---------CCCc
Q 014247 110 FIEGKVVVDVGCGTGILSIFCAQA--GAKRVYAVDASDIAVQANEVVKANNLTDKVIVLHGRVEDVE---------IDEE 178 (428)
Q Consensus 110 ~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~giD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~---------~~~~ 178 (428)
..++.+||||||+.|.++..+++. ...+|+++|+.++- .. +.+.++++|+.+.. ...+
T Consensus 20 ~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~~----------~i-~~~~~~~~d~~~~~~~~~~~~~~~~~~ 88 (180)
T d1ej0a_ 20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMD----------PI-VGVDFLQGDFRDELVMKALLERVGDSK 88 (180)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCC----------CC-TTEEEEESCTTSHHHHHHHHHHHTTCC
T ss_pred cCCCCeEEEEeccCCcceEEEEeeccccceEEEeeccccc----------cc-CCceEeecccccchhhhhhhhhccCcc
Confidence 468899999999999999998875 34689999987531 23 35899999987632 1368
Q ss_pred eeEEEEecchhhhc-----ch---hhHHHHHHHHhcccccCeEEEc
Q 014247 179 VDVIISEWMGYMLL-----YE---SMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 179 ~DlVvs~~~~~~l~-----~~---~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
+|+|+|+.....-. +. ......+.-+.++|++||.+++
T Consensus 89 ~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~ 134 (180)
T d1ej0a_ 89 VQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVV 134 (180)
T ss_dssp EEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred eeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEE
Confidence 99999976322111 11 1234556667789999999985
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.16 E-value=9.6e-06 Score=74.47 Aligned_cols=112 Identities=12% Similarity=0.010 Sum_probs=81.4
Q ss_pred cCCCCCCEEEEEcCCCcHHHHHHHHc--CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC----Ccee
Q 014247 108 QSFIEGKVVVDVGCGTGILSIFCAQA--GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID----EEVD 180 (428)
Q Consensus 108 ~~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~----~~~D 180 (428)
+...+|.+|||++||.|.-+..+|.. +..+|+++|++ .-+..+++++++.|+.+ +.+...|...+... ++||
T Consensus 90 L~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~-~~~~~~d~~~~~~~~~~~~~fD 168 (293)
T d2b9ea1 90 LDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSC-CELAEEDFLAVSPSDPRYHEVH 168 (293)
T ss_dssp HCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEECCGGGSCTTCGGGTTEE
T ss_pred cCCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccc-eeeeehhhhhhcccccccceee
Confidence 45578999999999999988887764 45589999999 88888999999999875 89999998876432 6799
Q ss_pred EEEEecchhhhc----c---------h----hh----HHHHHHHHhcccccCeEEEccCCee
Q 014247 181 VIISEWMGYMLL----Y---------E----SM----LGSVITARDRWLKRGGLILPSYATL 221 (428)
Q Consensus 181 lVvs~~~~~~l~----~---------~----~~----~~~~l~~~~~~LkpgG~lv~~~~~~ 221 (428)
.|+.....+... + . .. -..++..+. .|+|||.|+-+++++
T Consensus 169 ~VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl 229 (293)
T d2b9ea1 169 YILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSL 229 (293)
T ss_dssp EEEECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCC
T ss_pred EEeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccC
Confidence 999975311110 0 0 00 122444444 479999999776654
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.16 E-value=5.3e-06 Score=75.94 Aligned_cols=116 Identities=13% Similarity=0.090 Sum_probs=83.5
Q ss_pred hccCCCCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccc--ccCCCceeE
Q 014247 106 QNQSFIEGKVVVDVGCGTGILSIFCAQAG-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVED--VEIDEEVDV 181 (428)
Q Consensus 106 ~~~~~~~~~~VLDiGcGtG~ls~~la~~g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~--l~~~~~~Dl 181 (428)
..+...++.+|||+++|.|.=+..++..+ ..+|+++|.+ .-+...++++++.|..+ +.+...|... ...++.||.
T Consensus 96 ~~L~~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~-~~~~~~~~~~~~~~~~~~fd~ 174 (284)
T d1sqga2 96 TWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKA-TVKQGDGRYPSQWCGEQQFDR 174 (284)
T ss_dssp HHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCC-EEEECCTTCTHHHHTTCCEEE
T ss_pred cccCccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccc-eeeeccccccchhcccccccE
Confidence 34556889999999999999988888763 3589999999 88888889999998865 4444444332 223478999
Q ss_pred EEEecchhhhc---c---------h-------hhHHHHHHHHhcccccCeEEEccCCeee
Q 014247 182 IISEWMGYMLL---Y---------E-------SMLGSVITARDRWLKRGGLILPSYATLY 222 (428)
Q Consensus 182 Vvs~~~~~~l~---~---------~-------~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 222 (428)
|+.....+... . . ..-..+|..+.++|||||+|+-+++++.
T Consensus 175 IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~ 234 (284)
T d1sqga2 175 ILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVL 234 (284)
T ss_dssp EEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCC
T ss_pred EEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCc
Confidence 99965311111 0 0 1135668888899999999998776643
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=98.15 E-value=4.4e-06 Score=71.13 Aligned_cols=106 Identities=20% Similarity=0.241 Sum_probs=79.5
Q ss_pred HHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC------C
Q 014247 104 IMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI------D 176 (428)
Q Consensus 104 i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~------~ 176 (428)
+...+...+|..++|..||.|..+..+.+.+. +|+|+|.+ .++..|++. ...++.++++...++.. .
T Consensus 10 vl~~l~~~~g~~~vD~T~G~GGhs~~iL~~~~-~viaiD~D~~ai~~a~~~-----~~~~~~~~~~~f~~~~~~l~~~~~ 83 (182)
T d1wg8a2 10 ALDLLAVRPGGVYVDATLGGAGHARGILERGG-RVIGLDQDPEAVARAKGL-----HLPGLTVVQGNFRHLKRHLAALGV 83 (182)
T ss_dssp HHHHHTCCTTCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHT-----CCTTEEEEESCGGGHHHHHHHTTC
T ss_pred HHHhcCCCCCCEEEEeCCCCcHHHHHHhcccC-cEEEEhhhhhHHHHHhhc-----cccceeEeehHHHHHHHHHHHcCC
Confidence 34555668999999999999999999999854 89999999 777777653 23579999998877532 2
Q ss_pred CceeEEEEecchhhhc-------chhhHHHHHHHHhcccccCeEEEc
Q 014247 177 EEVDVIISEWMGYMLL-------YESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 177 ~~~DlVvs~~~~~~l~-------~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
+++|.|+..+ |.... ....+...|.....+|+|||++++
T Consensus 84 ~~vdgIl~DL-GvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~i 129 (182)
T d1wg8a2 84 ERVDGILADL-GVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVV 129 (182)
T ss_dssp SCEEEEEEEC-SCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred CccCEEEEEc-cCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEE
Confidence 6899999875 21111 112355678888899999998875
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=98.09 E-value=1.6e-06 Score=77.79 Aligned_cols=84 Identities=12% Similarity=0.150 Sum_probs=63.3
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC-
Q 014247 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID- 176 (428)
Q Consensus 99 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~- 176 (428)
...+.|.+.+...+++.|||||||+|.++..+++.+ ++|++||++ .++...++... ..++++++++|+.+++..
T Consensus 8 ~~~~~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~~-~~v~aiEiD~~l~~~L~~~~~---~~~~~~ii~~D~l~~~~~~ 83 (252)
T d1qyra_ 8 FVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERL-DQLTVIELDRDLAARLQTHPF---LGPKLTIYQQDAMTFNFGE 83 (252)
T ss_dssp HHHHHHHHHHCCCTTCCEEEECCTTTTTHHHHHTTC-SCEEEECCCHHHHHHHHTCTT---TGGGEEEECSCGGGCCHHH
T ss_pred HHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHccC-CceEEEEeccchhHHHHHHhh---hccchhHHhhhhhhhcccc
Confidence 344556666667789999999999999999999985 589999999 88877765332 235799999999887543
Q ss_pred -----CceeEEEEec
Q 014247 177 -----EEVDVIISEW 186 (428)
Q Consensus 177 -----~~~DlVvs~~ 186 (428)
+.--.|+++.
T Consensus 84 ~~~~~~~~~~vvgNl 98 (252)
T d1qyra_ 84 LAEKMGQPLRVFGNL 98 (252)
T ss_dssp HHHHHTSCEEEEEEC
T ss_pred cccccCCCeEEEecc
Confidence 2223666765
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=97.86 E-value=1.9e-05 Score=76.49 Aligned_cols=119 Identities=18% Similarity=0.120 Sum_probs=85.6
Q ss_pred HHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc----C----------CCeEEEEeCh-HHHHHHHHHHHHCCCC-C
Q 014247 98 ETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA----G----------AKRVYAVDAS-DIAVQANEVVKANNLT-D 161 (428)
Q Consensus 98 ~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~----g----------~~~V~giD~s-~~~~~a~~~~~~~~~~-~ 161 (428)
....+.+...+...++.+|||-.||+|.+...+.+. + ...++|+|++ .+...|+.++.-++.. .
T Consensus 148 ~~Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~ 227 (425)
T d2okca1 148 RPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTD 227 (425)
T ss_dssp HHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSS
T ss_pred hhhhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccc
Confidence 345667777776677899999999999998887764 1 1259999999 8888888877776654 2
Q ss_pred cEEEEEcccccccCCCceeEEEEecchhhhcc--------------hhhHHHHHHHHhcccccCeEEEc
Q 014247 162 KVIVLHGRVEDVEIDEEVDVIISEWMGYMLLY--------------ESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 162 ~v~~~~~d~~~l~~~~~~DlVvs~~~~~~l~~--------------~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
...+...|........+||+|++++....... ...-..++..+..+|++||++.+
T Consensus 228 ~~~i~~~d~l~~~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~i 296 (425)
T d2okca1 228 RSPIVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAV 296 (425)
T ss_dssp CCSEEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEE
T ss_pred cceeecCchhhhhcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEE
Confidence 35677777766555589999999984321110 01123578888899999998764
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=97.78 E-value=2.6e-05 Score=68.84 Aligned_cols=116 Identities=15% Similarity=0.187 Sum_probs=74.8
Q ss_pred hhccChhhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc----C-CCeEEEEeCh-HHHHHHHHHHHHCCCCCc
Q 014247 89 EMIKDRVRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA----G-AKRVYAVDAS-DIAVQANEVVKANNLTDK 162 (428)
Q Consensus 89 ~~~~d~~r~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~----g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~ 162 (428)
.+++.+.-...|.+.|.+. ++++||+||++.|..+.+++.. + ..+|+++|+. .....+. ....+
T Consensus 61 p~~k~p~d~~~~~eli~~~----KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~------~~~~~ 130 (232)
T d2bm8a1 61 RMLKDPDTQAVYHDMLWEL----RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA------SDMEN 130 (232)
T ss_dssp ECCSCHHHHHHHHHHHHHH----CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG------GGCTT
T ss_pred ecccCHHHHHHHHHHHHHh----CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhh------ccccc
Confidence 3455555555666666553 5679999999999877766542 2 4599999997 4432211 12356
Q ss_pred EEEEEcccccccC-----CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCC
Q 014247 163 VIVLHGRVEDVEI-----DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYA 219 (428)
Q Consensus 163 v~~~~~d~~~l~~-----~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 219 (428)
++++++|..+... ...+|+|+... .......+..+ ....+|++||.+++.+.
T Consensus 131 I~~i~gDs~~~~~~~~l~~~~~dlIfID~---~H~~~~v~~~~--~~~~lLk~GG~iIveD~ 187 (232)
T d2bm8a1 131 ITLHQGDCSDLTTFEHLREMAHPLIFIDN---AHANTFNIMKW--AVDHLLEEGDYFIIEDM 187 (232)
T ss_dssp EEEEECCSSCSGGGGGGSSSCSSEEEEES---SCSSHHHHHHH--HHHHTCCTTCEEEECSC
T ss_pred eeeeecccccHHHHHHHHhcCCCEEEEcC---CcchHHHHHHH--HHhcccCcCCEEEEEcC
Confidence 9999999765432 24688888754 22233333332 34579999999998654
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=97.67 E-value=1.8e-05 Score=69.56 Aligned_cols=115 Identities=15% Similarity=0.138 Sum_probs=66.8
Q ss_pred HHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcC-CCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCc
Q 014247 101 RAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAG-AKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEE 178 (428)
Q Consensus 101 ~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g-~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~ 178 (428)
...|.+.....++.+|+|+|||.|.++..++... ...|.|+++- ...+.- ......+. +.+++...+.-....+++
T Consensus 55 l~~~~~~~~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~P-~~~~~~~~-ni~~~~~~~dv~~l~~~~ 132 (257)
T d2p41a1 55 LRWFVERNLVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEP-IPMSTYGW-NLVRLQSGVDVFFIPPER 132 (257)
T ss_dssp HHHHHHTTSSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCC-CCCCSTTG-GGEEEECSCCTTTSCCCC
T ss_pred HHHHHHhcCccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccCC-cccccccc-ccccchhhhhHHhcCCCc
Confidence 3444444456778899999999999999999873 2378888875 321100 00011111 234554433222223488
Q ss_pred eeEEEEecchhhhcch---hhHHHHHHHHhcccccCeEEEcc
Q 014247 179 VDVIISEWMGYMLLYE---SMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 179 ~DlVvs~~~~~~l~~~---~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
+|+|+|+.-.+.-... ...-.+++-+.++|+|||.+++-
T Consensus 133 ~D~vlcDm~ess~~~~vd~~Rtl~vLela~~wLk~gg~FvvK 174 (257)
T d2p41a1 133 CDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVK 174 (257)
T ss_dssp CSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred CCEEEeeCCCCCCCchhhhhhHHHHHHHHHHHcccCCEEEEE
Confidence 9999997521111111 11235677778999999988753
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=97.64 E-value=4.1e-05 Score=67.91 Aligned_cols=83 Identities=18% Similarity=0.219 Sum_probs=59.2
Q ss_pred HHhccCCCCC--CEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHH---HHHHCC-----CCCcEEEEEccccc
Q 014247 104 IMQNQSFIEG--KVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANE---VVKANN-----LTDKVIVLHGRVED 172 (428)
Q Consensus 104 i~~~~~~~~~--~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~---~~~~~~-----~~~~v~~~~~d~~~ 172 (428)
+.+.+....+ .+|||.-||.|..++.+|..|+ +|+++|.+ .+....++ ++..+. ...+++++++|..+
T Consensus 78 l~kA~gl~~~~~~~VlD~TaGlG~Da~vlA~~G~-~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~ 156 (250)
T d2oyra1 78 VAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLT 156 (250)
T ss_dssp HHHHTTCBTTBCCCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHH
T ss_pred HHHHhcCCCCCCCEEEECCCcccHHHHHHHhCCC-EEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHH
Confidence 3444443333 4899999999999999999987 89999999 55444443 333321 12379999999876
Q ss_pred ccC--CCceeEEEEecc
Q 014247 173 VEI--DEEVDVIISEWM 187 (428)
Q Consensus 173 l~~--~~~~DlVvs~~~ 187 (428)
+-. ...||+|+..+|
T Consensus 157 ~L~~~~~~~DvIYlDPM 173 (250)
T d2oyra1 157 ALTDITPRPQVVYLDPM 173 (250)
T ss_dssp HSTTCSSCCSEEEECCC
T ss_pred HHhccCCCCCEEEECCC
Confidence 432 377999999884
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=97.28 E-value=0.00015 Score=61.31 Aligned_cols=100 Identities=24% Similarity=0.348 Sum_probs=64.3
Q ss_pred HHHHhccCCCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEc---cc-----
Q 014247 102 AAIMQNQSFIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHG---RV----- 170 (428)
Q Consensus 102 ~~i~~~~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~---d~----- 170 (428)
.++.+.....+|.+||-+|||. |.++..+|++ |+++|+++|.+ +-++.|++. |.. .++.. +.
T Consensus 18 ~al~~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga~---~vi~~~~~~~~~~~~ 90 (182)
T d1vj0a2 18 HAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEI----GAD---LTLNRRETSVEERRK 90 (182)
T ss_dssp HHHHTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHT----TCS---EEEETTTSCHHHHHH
T ss_pred HHHHHHhCCCCCCEEEEECCCccchhheecccccccccccccccccccccccccc----cce---EEEeccccchHHHHH
Confidence 3455555567899999999984 6777777776 88799999999 776666543 322 22221 11
Q ss_pred --ccccCCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 171 --EDVEIDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 171 --~~l~~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
.++.....+|+|+-.. .. +..++...++|++||++++-
T Consensus 91 ~i~~~~~~~g~Dvvid~v-----G~----~~~~~~a~~~l~~~G~iv~~ 130 (182)
T d1vj0a2 91 AIMDITHGRGADFILEAT-----GD----SRALLEGSELLRRGGFYSVA 130 (182)
T ss_dssp HHHHHTTTSCEEEEEECS-----SC----TTHHHHHHHHEEEEEEEEEC
T ss_pred HHHHhhCCCCceEEeecC-----Cc----hhHHHHHHHHhcCCCEEEEE
Confidence 1112235699998632 11 22345566789999998754
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=97.17 E-value=0.00025 Score=70.19 Aligned_cols=119 Identities=11% Similarity=-0.047 Sum_probs=77.5
Q ss_pred HHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHc----C---------------CCeEEEEeCh-HHHHHHHHHHHHC
Q 014247 98 ETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQA----G---------------AKRVYAVDAS-DIAVQANEVVKAN 157 (428)
Q Consensus 98 ~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~----g---------------~~~V~giD~s-~~~~~a~~~~~~~ 157 (428)
....+.|.+.+...++.+|+|-.||+|.+...+.+. . ...++|+|++ .+...|+-++--.
T Consensus 150 ~~Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~ 229 (524)
T d2ar0a1 150 RPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLH 229 (524)
T ss_dssp HHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTT
T ss_pred cchhHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhh
Confidence 345667777777778889999999999998777653 1 1258999999 8888888777655
Q ss_pred CCCCc----EEEEEcccccc--cCCCceeEEEEecchhhhcc----------h-hhHHHHHHHHhcccccCeEEEc
Q 014247 158 NLTDK----VIVLHGRVEDV--EIDEEVDVIISEWMGYMLLY----------E-SMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 158 ~~~~~----v~~~~~d~~~l--~~~~~~DlVvs~~~~~~l~~----------~-~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
+.... -.+...+.... ....+||+|++++....-.. . ..--.++..+.+.|++||++.+
T Consensus 230 ~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~ai 305 (524)
T d2ar0a1 230 DIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAV 305 (524)
T ss_dssp TCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEE
T ss_pred cccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEE
Confidence 54321 12223332211 11268999999984211110 0 1123478888899999998764
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=97.13 E-value=7.7e-05 Score=63.98 Aligned_cols=103 Identities=18% Similarity=0.156 Sum_probs=66.6
Q ss_pred ccCCCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEc---cc----ccccCC
Q 014247 107 NQSFIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHG---RV----EDVEID 176 (428)
Q Consensus 107 ~~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~---d~----~~l~~~ 176 (428)
.....+|.+||.+|||. |.++..+++. |+.+|+++|.+ .-++.|++. |. -.++.. |+ .++...
T Consensus 20 ~a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~----Ga---~~~~~~~~~~~~~~i~~~t~g 92 (195)
T d1kola2 20 TAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ----GF---EIADLSLDTPLHEQIAALLGE 92 (195)
T ss_dssp HTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----TC---EEEETTSSSCHHHHHHHHHSS
T ss_pred HhCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhc----cc---cEEEeCCCcCHHHHHHHHhCC
Confidence 35678999999999997 6677777765 88899999999 777666543 32 122211 11 112223
Q ss_pred CceeEEEEecchh-------hhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 177 EEVDVIISEWMGY-------MLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 177 ~~~DlVvs~~~~~-------~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
..+|+++-.. +. .........+.++...++++|||++++.
T Consensus 93 ~g~D~vid~v-G~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~ 139 (195)
T d1kola2 93 PEVDCAVDAV-GFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP 139 (195)
T ss_dssp SCEEEEEECC-CTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred CCcEEEEECc-cccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEe
Confidence 5799988532 11 1111112456788888999999988754
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=97.03 E-value=9.3e-05 Score=62.22 Aligned_cols=95 Identities=23% Similarity=0.242 Sum_probs=62.6
Q ss_pred ccCCCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccc-------cccCC
Q 014247 107 NQSFIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVE-------DVEID 176 (428)
Q Consensus 107 ~~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~-------~l~~~ 176 (428)
.....+|.+||-+|||. |.++..+++. |+++|+++|.+ .-.+.|++. |.. .++.-.-. ++...
T Consensus 22 ~a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~l----Ga~---~~i~~~~~~~~~~v~~~t~g 94 (174)
T d1jqba2 22 LADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFY----GAT---DILNYKNGHIEDQVMKLTNG 94 (174)
T ss_dssp HTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHH----TCS---EEECGGGSCHHHHHHHHTTT
T ss_pred HhCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhh----Ccc---ccccccchhHHHHHHHHhhc
Confidence 35678999999999996 7888888886 78789999999 666666543 321 23322111 11222
Q ss_pred CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 177 EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 177 ~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
..+|+|+-.. .. ...++...++|+|+|++++-
T Consensus 95 ~G~D~vid~~-----g~----~~~~~~a~~~~~~~G~iv~~ 126 (174)
T d1jqba2 95 KGVDRVIMAG-----GG----SETLSQAVKMVKPGGIISNI 126 (174)
T ss_dssp SCEEEEEECS-----SC----TTHHHHHHHHEEEEEEEEEC
T ss_pred cCcceEEEcc-----CC----HHHHHHHHHHHhcCCEEEEE
Confidence 5699998632 11 12345556789999998864
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.01 E-value=0.00067 Score=62.59 Aligned_cols=81 Identities=12% Similarity=0.062 Sum_probs=56.3
Q ss_pred hhccChhhHHHHHHHHH--hccCCCCCCEEEEEcCCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEE
Q 014247 89 EMIKDRVRTETYRAAIM--QNQSFIEGKVVVDVGCGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVI 164 (428)
Q Consensus 89 ~~~~d~~r~~~~~~~i~--~~~~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~ 164 (428)
.++.|..-.+.+.+.+. .......+..|||||.|.|.++..+.++ ++++|+++|++ .+....++... .++++
T Consensus 18 nfL~d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~----~~~~~ 93 (322)
T d1i4wa_ 18 KYLWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE----GSPLQ 93 (322)
T ss_dssp CCBCCHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT----TSSCE
T ss_pred cccCCHHHHHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhcc----CCCcE
Confidence 34555444444443331 1112235779999999999999999886 56799999999 88877766542 24689
Q ss_pred EEEcccccc
Q 014247 165 VLHGRVEDV 173 (428)
Q Consensus 165 ~~~~d~~~l 173 (428)
++++|+..+
T Consensus 94 ii~~D~l~~ 102 (322)
T d1i4wa_ 94 ILKRDPYDW 102 (322)
T ss_dssp EECSCTTCH
T ss_pred EEeCchhhc
Confidence 999998654
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=96.93 E-value=0.0021 Score=53.42 Aligned_cols=99 Identities=20% Similarity=0.213 Sum_probs=64.1
Q ss_pred HHHhccCCCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc-----
Q 014247 103 AIMQNQSFIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE----- 174 (428)
Q Consensus 103 ~i~~~~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~----- 174 (428)
++.+.....++.+||-+|||. |.++..+++. |+..|+++|.+ .-++.+++. |.. .++..+-.++.
T Consensus 19 a~~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~----Ga~---~~i~~~~~~~~~~i~~ 91 (174)
T d1f8fa2 19 ACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL----GAT---HVINSKTQDPVAAIKE 91 (174)
T ss_dssp HHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH----TCS---EEEETTTSCHHHHHHH
T ss_pred HHHHhhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHc----CCe---EEEeCCCcCHHHHHHH
Confidence 344555678999999999985 4456666665 88889999999 666666553 332 34433222211
Q ss_pred -CCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 175 -IDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 175 -~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
.++.+|+|+-.. . -...++...++++|+|++++.
T Consensus 92 ~t~gg~D~vid~~-----G----~~~~~~~~~~~~~~~G~i~~~ 126 (174)
T d1f8fa2 92 ITDGGVNFALEST-----G----SPEILKQGVDALGILGKIAVV 126 (174)
T ss_dssp HTTSCEEEEEECS-----C----CHHHHHHHHHTEEEEEEEEEC
T ss_pred HcCCCCcEEEEcC-----C----cHHHHHHHHhcccCceEEEEE
Confidence 135799998632 1 234456667889999998754
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=96.83 E-value=0.0023 Score=53.25 Aligned_cols=98 Identities=20% Similarity=0.177 Sum_probs=64.8
Q ss_pred HHhccCCCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccc--------
Q 014247 104 IMQNQSFIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVED-------- 172 (428)
Q Consensus 104 i~~~~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~-------- 172 (428)
+.+.....+|.+||-+|||. |.++..+++. |+++|+++|.+ .-++.|++ .|.. .++...-.+
T Consensus 20 ~~~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~----~Ga~---~~i~~~~~~~~~~~~~~ 92 (174)
T d1e3ia2 20 AINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA----LGAT---DCLNPRELDKPVQDVIT 92 (174)
T ss_dssp HHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCS---EEECGGGCSSCHHHHHH
T ss_pred HHHhhCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHH----hCCC---cccCCccchhhhhhhHh
Confidence 34455678999999999997 8888888886 88899999999 65555544 3432 223211111
Q ss_pred ccCCCceeEEEEecchhhhcchhhHHHHHHHHhcccccC-eEEEcc
Q 014247 173 VEIDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRG-GLILPS 217 (428)
Q Consensus 173 l~~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~lv~~ 217 (428)
......+|+|+-.. . .+..+....+.|++| |++++-
T Consensus 93 ~~~~~G~d~vie~~-----G----~~~~~~~a~~~~~~g~G~~v~v 129 (174)
T d1e3ia2 93 ELTAGGVDYSLDCA-----G----TAQTLKAAVDCTVLGWGSCTVV 129 (174)
T ss_dssp HHHTSCBSEEEESS-----C----CHHHHHHHHHTBCTTTCEEEEC
T ss_pred hhhcCCCcEEEEec-----c----cchHHHHHHHHhhcCCeEEEec
Confidence 11136799998632 1 234566677888886 888754
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.68 E-value=0.0017 Score=53.95 Aligned_cols=97 Identities=19% Similarity=0.268 Sum_probs=61.6
Q ss_pred HHHhccCCCCCCEEEEEcC--CCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEc---cccc---
Q 014247 103 AIMQNQSFIEGKVVVDVGC--GTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHG---RVED--- 172 (428)
Q Consensus 103 ~i~~~~~~~~~~~VLDiGc--GtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~---d~~~--- 172 (428)
++.+.....+|++||-.|+ |.|.++..+|+. |+ +|++++.+ +-.+.++ +.|.. .++.- |..+
T Consensus 19 al~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~-~vi~~~~~~~~~~~~~----~~Ga~---~vi~~~~~~~~~~i~ 90 (174)
T d1yb5a2 19 ALIHSACVKAGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIVL----QNGAH---EVFNHREVNYIDKIK 90 (174)
T ss_dssp HHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHH----HTTCS---EEEETTSTTHHHHHH
T ss_pred HHHHHhCCCCCCEEEEEeccccccccccccccccCc-cccccccccccccccc----ccCcc---cccccccccHHHHhh
Confidence 3445556679999999997 356777777876 77 79998877 5555544 34443 22321 1111
Q ss_pred -ccCCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 173 -VEIDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 173 -l~~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
......+|+|+... + ...+....++|+|+|+++.-
T Consensus 91 ~~t~~~g~d~v~d~~-g---------~~~~~~~~~~l~~~G~iv~~ 126 (174)
T d1yb5a2 91 KYVGEKGIDIIIEML-A---------NVNLSKDLSLLSHGGRVIVV 126 (174)
T ss_dssp HHHCTTCEEEEEESC-H---------HHHHHHHHHHEEEEEEEEEC
T ss_pred hhhccCCceEEeecc-c---------HHHHHHHHhccCCCCEEEEE
Confidence 12236799999743 1 12355666789999998854
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.67 E-value=0.0013 Score=54.45 Aligned_cols=95 Identities=24% Similarity=0.273 Sum_probs=61.3
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccc---------cC
Q 014247 108 QSFIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDV---------EI 175 (428)
Q Consensus 108 ~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l---------~~ 175 (428)
....++.+||-+|||. |.++..+++. |+.+|+++|.+ .-++.|++. |.. .++..+-.+. ..
T Consensus 22 ~~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~----Ga~---~~~~~~~~~~~~~~~~~~~~~ 94 (171)
T d1pl8a2 22 GGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI----GAD---LVLQISKESPQEIARKVEGQL 94 (171)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----TCS---EEEECSSCCHHHHHHHHHHHH
T ss_pred hCCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHh----CCc---ccccccccccccccccccccC
Confidence 3567899999999986 5566666665 88899999999 766666543 332 1222211111 11
Q ss_pred CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccC
Q 014247 176 DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 176 ~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
...+|+|+-.. . -+..++...+++++||++++..
T Consensus 95 g~g~Dvvid~~-----G----~~~~~~~a~~~~~~gG~iv~~G 128 (171)
T d1pl8a2 95 GCKPEVTIECT-----G----AEASIQAGIYATRSGGTLVLVG 128 (171)
T ss_dssp TSCCSEEEECS-----C----CHHHHHHHHHHSCTTCEEEECS
T ss_pred CCCceEEEecc-----C----CchhHHHHHHHhcCCCEEEEEe
Confidence 35789988632 1 1335666778899999988643
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.65 E-value=0.0005 Score=57.05 Aligned_cols=95 Identities=22% Similarity=0.232 Sum_probs=60.2
Q ss_pred cCCCCCCEEEEEcCC-CcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEc-ccccc--cCCCceeE
Q 014247 108 QSFIEGKVVVDVGCG-TGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHG-RVEDV--EIDEEVDV 181 (428)
Q Consensus 108 ~~~~~~~~VLDiGcG-tG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~-d~~~l--~~~~~~Dl 181 (428)
....+|++||-+|+| .|.++..+++. |+ +|+++|.+ +-++.|++. |.. .++.. +-.+. ...+.+|+
T Consensus 23 ~~~~~g~~vlI~GaG~vG~~a~q~ak~~G~-~vi~~~~~~~k~~~a~~l----Ga~---~~i~~~~~~~~~~~~~~~~d~ 94 (168)
T d1piwa2 23 NGCGPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMKM----GAD---HYIATLEEGDWGEKYFDTFDL 94 (168)
T ss_dssp TTCSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHH----TCS---EEEEGGGTSCHHHHSCSCEEE
T ss_pred hCcCCCCEEEEECCCCcchhHHHHhhhccc-cccccccchhHHHHhhcc----CCc---EEeeccchHHHHHhhhcccce
Confidence 356899999999998 57777777776 87 89999999 777766653 322 22321 11111 12367998
Q ss_pred EEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 182 IISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 182 Vvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
|+... + ..... .+....+.|+|+|++++-
T Consensus 95 vi~~~-~--~~~~~----~~~~~~~~l~~~G~iv~~ 123 (168)
T d1piwa2 95 IVVCA-S--SLTDI----DFNIMPKAMKVGGRIVSI 123 (168)
T ss_dssp EEECC-S--CSTTC----CTTTGGGGEEEEEEEEEC
T ss_pred EEEEe-c--CCccc----hHHHHHHHhhccceEEEe
Confidence 88632 1 11111 123457889999998864
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=96.36 E-value=0.0033 Score=52.35 Aligned_cols=100 Identities=20% Similarity=0.201 Sum_probs=61.4
Q ss_pred HHHhccCCCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEc-cccc------
Q 014247 103 AIMQNQSFIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHG-RVED------ 172 (428)
Q Consensus 103 ~i~~~~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~-d~~~------ 172 (428)
++.+.....+|++||-+|||. |.++..+++. |+++|+++|.+ +-++.|++. |-. .++.. +...
T Consensus 20 Av~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~----GA~---~~in~~~~~~~~~~~~ 92 (176)
T d1d1ta2 20 AAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAV----GAT---ECISPKDSTKPISEVL 92 (176)
T ss_dssp HHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHH----TCS---EEECGGGCSSCHHHHH
T ss_pred HHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhc----CCc---EEECccccchHHHHHH
Confidence 344555578999999999985 4555556665 88899999999 888777765 221 22221 1111
Q ss_pred -ccCCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 173 -VEIDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 173 -l~~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
......+|+++-.. .....+...+..+++.+|+++.-
T Consensus 93 ~~~~g~G~d~vi~~~--------g~~~~~~~a~~~~~~~~G~~v~v 130 (176)
T d1d1ta2 93 SEMTGNNVGYTFEVI--------GHLETMIDALASCHMNYGTSVVV 130 (176)
T ss_dssp HHHHTSCCCEEEECS--------CCHHHHHHHHTTSCTTTCEEEEC
T ss_pred HHhccccceEEEEeC--------CchHHHHHHHHHhhcCCeEEEEE
Confidence 11236799888632 11333444555566776877753
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=96.35 E-value=0.0036 Score=51.99 Aligned_cols=98 Identities=20% Similarity=0.222 Sum_probs=59.0
Q ss_pred HHhccCCCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccc--------
Q 014247 104 IMQNQSFIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVED-------- 172 (428)
Q Consensus 104 i~~~~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~-------- 172 (428)
+.+.....+|++||-+|||. |.++..++++ |+.+|+++|.+ .-++.|++ .|.. .++...-.+
T Consensus 19 ~~~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~----lGa~---~~i~~~~~d~~~~~~~~ 91 (174)
T d1p0fa2 19 AVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE----LGAT---ECLNPKDYDKPIYEVIC 91 (174)
T ss_dssp HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH----TTCS---EEECGGGCSSCHHHHHH
T ss_pred HHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHH----cCCc---EEEcCCCchhHHHHHHH
Confidence 34455678999999999985 4555666665 88899999999 66766654 3332 233211111
Q ss_pred ccCCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 173 VEIDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 173 l~~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
......+|+|+-.. .....+...+..+++++|++++
T Consensus 92 ~~~~~G~d~vid~~--------g~~~~~~~~~~~~~~~~G~~v~ 127 (174)
T d1p0fa2 92 EKTNGGVDYAVECA--------GRIETMMNALQSTYCGSGVTVV 127 (174)
T ss_dssp HHTTSCBSEEEECS--------CCHHHHHHHHHTBCTTTCEEEE
T ss_pred HhcCCCCcEEEEcC--------CCchHHHHHHHHHHHhcCceEE
Confidence 11235789988632 1123333344445566687764
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=96.29 E-value=0.0094 Score=49.09 Aligned_cols=92 Identities=18% Similarity=0.169 Sum_probs=59.5
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccc------ccCCCcee
Q 014247 110 FIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVED------VEIDEEVD 180 (428)
Q Consensus 110 ~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~------l~~~~~~D 180 (428)
..++.+||-+|+|. |.++..++++ |+.+|+++|.+ +-++.+++ .+. ..++..+-.. ......+|
T Consensus 30 ~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~----~ga---~~~i~~~~~~~~~~~~~~~~~g~d 102 (172)
T d1h2ba2 30 LYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAER----LGA---DHVVDARRDPVKQVMELTRGRGVN 102 (172)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHH----TTC---SEEEETTSCHHHHHHHHTTTCCEE
T ss_pred cCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhh----ccc---ceeecCcccHHHHHHHhhCCCCce
Confidence 47899999999986 4555566654 88899999999 65555554 332 2334322111 11235699
Q ss_pred EEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 181 VIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 181 lVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
+|+-.. . -...++...+.|++||++++.
T Consensus 103 ~vid~~-----g----~~~~~~~a~~~l~~~G~iv~~ 130 (172)
T d1h2ba2 103 VAMDFV-----G----SQATVDYTPYLLGRMGRLIIV 130 (172)
T ss_dssp EEEESS-----C----CHHHHHHGGGGEEEEEEEEEC
T ss_pred EEEEec-----C----cchHHHHHHHHHhCCCEEEEE
Confidence 998633 1 223466778899999998864
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=96.17 E-value=0.014 Score=47.83 Aligned_cols=95 Identities=22% Similarity=0.250 Sum_probs=60.7
Q ss_pred cCCCCCCEEEEEcCC-CcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccc--------c--c
Q 014247 108 QSFIEGKVVVDVGCG-TGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVED--------V--E 174 (428)
Q Consensus 108 ~~~~~~~~VLDiGcG-tG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~--------l--~ 174 (428)
....++.+||-+||| .|.++..+++. |+ +|+++|.+ .-++.|++. +.. ..+......+ + .
T Consensus 22 ~~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga-~vi~v~~~~~r~~~a~~~----ga~--~~~~~~~~~~~~~~~~~~~~~~ 94 (170)
T d1e3ja2 22 AGVQLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKNC----GAD--VTLVVDPAKEEESSIIERIRSA 94 (170)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHT----TCS--EEEECCTTTSCHHHHHHHHHHH
T ss_pred hCCCCCCEEEEEcccccchhhHhhHhhhcc-cccccchHHHHHHHHHHc----CCc--EEEeccccccccchhhhhhhcc
Confidence 356889999999998 46777777776 76 89999999 766666553 221 2222211111 0 1
Q ss_pred CCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccC
Q 014247 175 IDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 175 ~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
....+|+|+-.. . -+..+....++|+++|+++...
T Consensus 95 ~g~g~D~vid~~-----g----~~~~~~~a~~~~~~~G~iv~~G 129 (170)
T d1e3ja2 95 IGDLPNVTIDCS-----G----NEKCITIGINITRTGGTLMLVG 129 (170)
T ss_dssp SSSCCSEEEECS-----C----CHHHHHHHHHHSCTTCEEEECS
T ss_pred cccCCceeeecC-----C----ChHHHHHHHHHHhcCCceEEEe
Confidence 135689998632 1 1244566667899999988643
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=96.01 E-value=0.0021 Score=52.74 Aligned_cols=95 Identities=20% Similarity=0.218 Sum_probs=64.0
Q ss_pred CCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC-CceeEEEEecc
Q 014247 112 EGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID-EEVDVIISEWM 187 (428)
Q Consensus 112 ~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~-~~~DlVvs~~~ 187 (428)
++.+||-||+|. |..+...|+. |+ +|+++|.+ +.++..+..... .++....+-..+... ...|+||...
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~lGA-~V~~~D~~~~~l~~l~~~~~~-----~~~~~~~~~~~l~~~~~~aDivI~aa- 103 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDINVERLSYLETLFGS-----RVELLYSNSAEIETAVAEADLLIGAV- 103 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGG-----GSEEEECCHHHHHHHHHTCSEEEECC-
T ss_pred CCcEEEEECCChHHHHHHHHHhhCCC-EEEEEeCcHHHHHHHHHhhcc-----cceeehhhhhhHHHhhccCcEEEEee-
Confidence 568999999997 5556666655 77 99999999 777666555433 356665554443222 5789999865
Q ss_pred hhhhcchhhHHHHHHHHhcccccCeEEE
Q 014247 188 GYMLLYESMLGSVITARDRWLKRGGLIL 215 (428)
Q Consensus 188 ~~~l~~~~~~~~~l~~~~~~LkpgG~lv 215 (428)
.......+.-+-+++.+.+|||.+++
T Consensus 104 --lipG~~aP~lIt~~mv~~Mk~GSVIV 129 (168)
T d1pjca1 104 --LVPGRRAPILVPASLVEQMRTGSVIV 129 (168)
T ss_dssp --CCTTSSCCCCBCHHHHTTSCTTCEEE
T ss_pred --ecCCcccCeeecHHHHhhcCCCcEEE
Confidence 33333333334466778899999887
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.81 E-value=0.013 Score=47.74 Aligned_cols=92 Identities=24% Similarity=0.260 Sum_probs=56.9
Q ss_pred cCCCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc------CCCc
Q 014247 108 QSFIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE------IDEE 178 (428)
Q Consensus 108 ~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~------~~~~ 178 (428)
....++++||-+|||. |.++..+++. |+ +|+++|.+ .-++.+++ .|.. .++..+-.+.. ..+.
T Consensus 23 ~~~~~g~~VlV~GaG~vG~~~~~~ak~~G~-~Vi~~~~~~~~~~~a~~----~Ga~---~~i~~~~~~~~~~~~~~~~g~ 94 (166)
T d1llua2 23 TNARPGQWVAISGIGGLGHVAVQYARAMGL-HVAAIDIDDAKLELARK----LGAS---LTVNARQEDPVEAIQRDIGGA 94 (166)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH----TTCS---EEEETTTSCHHHHHHHHHSSE
T ss_pred hCCCCCCEEEEeeccccHHHHHHHHHHcCC-ccceecchhhHHHhhhc----cCcc---ccccccchhHHHHHHHhhcCC
Confidence 4568899999999985 6677777776 65 89999999 66666544 3432 23332221110 1133
Q ss_pred eeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 179 VDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 179 ~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
+|.|++.. -...+....++|+|+|++++-
T Consensus 95 ~~~i~~~~----------~~~~~~~~~~~l~~~G~iv~~ 123 (166)
T d1llua2 95 HGVLVTAV----------SNSAFGQAIGMARRGGTIALV 123 (166)
T ss_dssp EEEEECCS----------CHHHHHHHHTTEEEEEEEEEC
T ss_pred cccccccc----------cchHHHHHHHHhcCCcEEEEE
Confidence 44444322 123456677899999998864
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=95.76 E-value=0.0017 Score=53.64 Aligned_cols=94 Identities=19% Similarity=0.255 Sum_probs=60.6
Q ss_pred cCCCCCCEEEEEcCC--CcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccc-------cCC
Q 014247 108 QSFIEGKVVVDVGCG--TGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDV-------EID 176 (428)
Q Consensus 108 ~~~~~~~~VLDiGcG--tG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l-------~~~ 176 (428)
....++.+||-+||+ .|.++..+++. |..+|+++|.+ .-.+.+++. |.. .++..+-.+. ..+
T Consensus 23 ~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~----Ga~---~~i~~~~~~~~~~~~~~~~~ 95 (170)
T d1jvba2 23 ASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA----GAD---YVINASMQDPLAEIRRITES 95 (170)
T ss_dssp TTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH----TCS---EEEETTTSCHHHHHHHHTTT
T ss_pred hCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHc----CCc---eeeccCCcCHHHHHHHHhhc
Confidence 456889999999973 45566655554 87899999999 666666543 322 2333222221 123
Q ss_pred CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 177 EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 177 ~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
+.||+|+... . -...++...+.|+|||++++.
T Consensus 96 ~~~d~vid~~-----g----~~~~~~~a~~~l~~~G~iv~~ 127 (170)
T d1jvba2 96 KGVDAVIDLN-----N----SEKTLSVYPKALAKQGKYVMV 127 (170)
T ss_dssp SCEEEEEESC-----C----CHHHHTTGGGGEEEEEEEEEC
T ss_pred ccchhhhccc-----c----cchHHHhhhhhcccCCEEEEe
Confidence 6799998633 1 233445667899999998854
|
| >d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase AviRa domain: rRNA methyltransferase AviRa species: Streptomyces viridochromogenes [TaxId: 1938]
Probab=95.67 E-value=0.017 Score=50.53 Aligned_cols=111 Identities=15% Similarity=0.123 Sum_probs=76.9
Q ss_pred ccCCCCCCEEEEEcCCCcHHHHHHHHcCC-----------------------------------------CeEEEEeCh-
Q 014247 107 NQSFIEGKVVVDVGCGTGILSIFCAQAGA-----------------------------------------KRVYAVDAS- 144 (428)
Q Consensus 107 ~~~~~~~~~VLDiGcGtG~ls~~la~~g~-----------------------------------------~~V~giD~s- 144 (428)
......+..++|--||+|.+...+|-... ..++|.|++
T Consensus 45 l~~w~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~ 124 (249)
T d1o9ga_ 45 RLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYL 124 (249)
T ss_dssp TSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHH
T ss_pred hhcCCCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCH
Confidence 33445566899999999999888765310 146788888
Q ss_pred HHHHHH---HHHHHHCCCCCcEEEEEccccccc------CCCceeEEEEecc-hhhhcch-----hhHHHHHHHHhcccc
Q 014247 145 DIAVQA---NEVVKANNLTDKVIVLHGRVEDVE------IDEEVDVIISEWM-GYMLLYE-----SMLGSVITARDRWLK 209 (428)
Q Consensus 145 ~~~~~a---~~~~~~~~~~~~v~~~~~d~~~l~------~~~~~DlVvs~~~-~~~l~~~-----~~~~~~l~~~~~~Lk 209 (428)
.++..| ++++...++.+.|.+.+.|+.+.. .+...++||+|+. +.-+..+ ..+..+...+.+.|.
T Consensus 125 ~ai~~A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~~~~~~~~~~~~~~~l~~~~p 204 (249)
T d1o9ga_ 125 EAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALP 204 (249)
T ss_dssp HHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHcCCCceeeeeecchhccCcchhccCCCCCCEEEeCCCccccccccccchHHHHHHHHHHHHccCC
Confidence 777777 468888899999999999986543 2366899999973 3333222 235666777777776
Q ss_pred cCeEEEcc
Q 014247 210 RGGLILPS 217 (428)
Q Consensus 210 pgG~lv~~ 217 (428)
....++++
T Consensus 205 ~~s~~~it 212 (249)
T d1o9ga_ 205 AHAVIAVT 212 (249)
T ss_dssp TTCEEEEE
T ss_pred CCcEEEEe
Confidence 55555543
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=95.30 E-value=0.011 Score=48.39 Aligned_cols=94 Identities=27% Similarity=0.229 Sum_probs=58.5
Q ss_pred ccCCCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccc--ccCCCceeE
Q 014247 107 NQSFIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVED--VEIDEEVDV 181 (428)
Q Consensus 107 ~~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~--l~~~~~~Dl 181 (428)
.....+|++||-+|||. |.++..+++. |+ +++++|.+ +-.+.+++. |.. .++...-.+ ....+.+|+
T Consensus 25 ~~~~~~G~~VlI~GaG~vG~~a~qlak~~Ga-~~i~~~~~~~~~~~a~~l----Gad---~~i~~~~~~~~~~~~~~~D~ 96 (168)
T d1uufa2 25 HWQAGPGKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKREAAKAL----GAD---EVVNSRNADEMAAHLKSFDF 96 (168)
T ss_dssp HTTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHH----TCS---EEEETTCHHHHHTTTTCEEE
T ss_pred HhCCCCCCEEEEeccchHHHHHHHHhhcccc-cchhhccchhHHHHHhcc----CCc---EEEECchhhHHHHhcCCCce
Confidence 34678999999999975 6677777775 77 67788888 655555543 322 233222111 112267999
Q ss_pred EEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 182 IISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 182 Vvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
++-.. .... .+....++|+++|++++.
T Consensus 97 vid~~-----g~~~----~~~~~~~~l~~~G~iv~~ 123 (168)
T d1uufa2 97 ILNTV-----AAPH----NLDDFTTLLKRDGTMTLV 123 (168)
T ss_dssp EEECC-----SSCC----CHHHHHTTEEEEEEEEEC
T ss_pred eeeee-----ecch----hHHHHHHHHhcCCEEEEe
Confidence 88632 1111 234456789999998864
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=95.22 E-value=0.0032 Score=52.27 Aligned_cols=96 Identities=18% Similarity=0.181 Sum_probs=61.1
Q ss_pred HHHhccCCCCCCEEEEEcCCC--cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccc------
Q 014247 103 AIMQNQSFIEGKVVVDVGCGT--GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVED------ 172 (428)
Q Consensus 103 ~i~~~~~~~~~~~VLDiGcGt--G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~------ 172 (428)
++.+.....++++||-.|+|. |.++..+|+. |+ +|++++.+ +-.+.+++. |-. .++..+-.+
T Consensus 19 al~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga-~Vi~~~~s~~k~~~~~~l----Ga~---~vi~~~~~d~~~~v~ 90 (179)
T d1qora2 19 LLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALKA----GAW---QVINYREEDLVERLK 90 (179)
T ss_dssp HHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHH----TCS---EEEETTTSCHHHHHH
T ss_pred HHHHHhCCCCCCEEEEEccccccchHHHHHHHHhCC-eEeecccchHHHHHHHhc----CCe---EEEECCCCCHHHHHH
Confidence 344555668899999997765 5677777776 77 89999999 766666543 322 233222122
Q ss_pred -ccCCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 173 -VEIDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 173 -l~~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
+.....+|+|+... ..+ .+......|+++|+++.
T Consensus 91 ~~t~g~g~d~v~d~~-----g~~-----~~~~~~~~l~~~G~~v~ 125 (179)
T d1qora2 91 EITGGKKVRVVYDSV-----GRD-----TWERSLDCLQRRGLMVS 125 (179)
T ss_dssp HHTTTCCEEEEEECS-----CGG-----GHHHHHHTEEEEEEEEE
T ss_pred HHhCCCCeEEEEeCc-----cHH-----HHHHHHHHHhcCCeeee
Confidence 22246799988633 111 23456678999998764
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=94.98 E-value=0.049 Score=44.48 Aligned_cols=97 Identities=23% Similarity=0.192 Sum_probs=59.2
Q ss_pred HHHhccCCCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccc-c------
Q 014247 103 AIMQNQSFIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVE-D------ 172 (428)
Q Consensus 103 ~i~~~~~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~-~------ 172 (428)
++.+.....+|.+||-.|||- |.++..++++ |++.|+++|.+ .-.+.+++. |.. .++...-. +
T Consensus 19 al~~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~l----Ga~---~~i~~~~~~~~~~~~~ 91 (176)
T d2fzwa2 19 AAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF----GAT---ECINPQDFSKPIQEVL 91 (176)
T ss_dssp HHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH----TCS---EEECGGGCSSCHHHHH
T ss_pred HHHHhhCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHh----CCc---EEEeCCchhhHHHHHH
Confidence 344555678999999999973 3455555554 88899999999 666666553 322 22322111 1
Q ss_pred -ccCCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEE
Q 014247 173 -VEIDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLIL 215 (428)
Q Consensus 173 -l~~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv 215 (428)
...+..+|+|+-.. . ...+++....++++||.++
T Consensus 92 ~~~~~~g~D~vid~~-----G----~~~~~~~~~~~~~~g~~~~ 126 (176)
T d2fzwa2 92 IEMTDGGVDYSFECI-----G----NVKVMRAALEACHKGWGVS 126 (176)
T ss_dssp HHHTTSCBSEEEECS-----C----CHHHHHHHHHTBCTTTCEE
T ss_pred HHHcCCCCcEeeecC-----C----CHHHHHHHHHhhcCCceeE
Confidence 01236799999632 1 2234556677888886554
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=94.28 E-value=0.041 Score=47.71 Aligned_cols=55 Identities=24% Similarity=0.309 Sum_probs=45.4
Q ss_pred HHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHH
Q 014247 99 TYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVK 155 (428)
Q Consensus 99 ~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~ 155 (428)
.+.+.+.+... .+|..|||.=||+|..+..+.+.|- +.+|+|++ +.++.|++++.
T Consensus 200 ~L~~~lI~~~s-~~gd~VlDpF~GSGTT~~aa~~~~R-~~ig~El~~~y~~~a~~Rl~ 255 (256)
T d1g60a_ 200 DLIERIIRASS-NPNDLVLDCFMGSGTTAIVAKKLGR-NFIGCDMNAEYVNQANFVLN 255 (256)
T ss_dssp HHHHHHHHHHC-CTTCEEEESSCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHH
T ss_pred hHHHHHHHHhC-CCCCEEEECCCCchHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHc
Confidence 44455555543 7889999999999999998888865 99999999 99999998875
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.27 E-value=0.0047 Score=51.40 Aligned_cols=97 Identities=21% Similarity=0.244 Sum_probs=58.6
Q ss_pred HHHhccCCCCCCEEEEEcC--CCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccc-----
Q 014247 103 AIMQNQSFIEGKVVVDVGC--GTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDV----- 173 (428)
Q Consensus 103 ~i~~~~~~~~~~~VLDiGc--GtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l----- 173 (428)
++.+.....+|++||-.|. |.|.++..+|+. |+ +|+++..+ +-.+.++ +.|.. .++...-.++
T Consensus 16 al~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~-~vi~~~~~~~~~~~l~----~~Ga~---~vi~~~~~~~~~~v~ 87 (183)
T d1pqwa_ 16 SLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLS----RLGVE---YVGDSRSVDFADEIL 87 (183)
T ss_dssp HHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHH----TTCCS---EEEETTCSTHHHHHH
T ss_pred HHHHHhCCCCCCEEEEECCCCCcccccchhhccccc-cceeeecccccccccc----ccccc---ccccCCccCHHHHHH
Confidence 3445556688999999874 345667777776 77 77777766 5555443 34443 2222111111
Q ss_pred --cCCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 174 --EIDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 174 --~~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
.....||+|+... .. ..++...++|+++|+++..
T Consensus 88 ~~t~~~g~d~v~d~~-----g~-----~~~~~~~~~l~~~G~~v~~ 123 (183)
T d1pqwa_ 88 ELTDGYGVDVVLNSL-----AG-----EAIQRGVQILAPGGRFIEL 123 (183)
T ss_dssp HHTTTCCEEEEEECC-----CT-----HHHHHHHHTEEEEEEEEEC
T ss_pred HHhCCCCEEEEEecc-----cc-----hHHHHHHHHhcCCCEEEEE
Confidence 1236799999743 11 2345556789999998853
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.26 E-value=0.019 Score=46.68 Aligned_cols=91 Identities=22% Similarity=0.259 Sum_probs=54.4
Q ss_pred CCCCCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccc----c--CCCce
Q 014247 109 SFIEGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDV----E--IDEEV 179 (428)
Q Consensus 109 ~~~~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l----~--~~~~~ 179 (428)
...++++||-.|||. |.++..+++. |+ +|+++|.+ .-++.+++ .|.. .++...-.+. . .++.+
T Consensus 24 ~~~~g~~vlv~G~G~iG~~a~~~a~~~g~-~v~~~~~~~~r~~~~k~----~Ga~---~~~~~~~~~~~~~~~~~~~~~~ 95 (168)
T d1rjwa2 24 GAKPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAKE----LGAD---LVVNPLKEDAAKFMKEKVGGVH 95 (168)
T ss_dssp TCCTTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHH----TTCS---EEECTTTSCHHHHHHHHHSSEE
T ss_pred CCCCCCEEEEeecccchhhhhHHHhcCCC-eEeccCCCHHHhhhhhh----cCcc---eecccccchhhhhcccccCCCc
Confidence 467899999999986 5566666666 56 89999999 66655544 3432 2221111111 0 12344
Q ss_pred eEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 180 DVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 180 DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
|+|++.. -...+....+.|+|+|++++.
T Consensus 96 ~~v~~~~----------~~~~~~~a~~~l~~~G~i~~~ 123 (168)
T d1rjwa2 96 AAVVTAV----------SKPAFQSAYNSIRRGGACVLV 123 (168)
T ss_dssp EEEESSC----------CHHHHHHHHHHEEEEEEEEEC
T ss_pred eEEeecC----------CHHHHHHHHHHhccCCceEec
Confidence 4444311 123456677789999998864
|
| >d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: ML2640-like domain: Putative methyltransferase ML2640 species: Mycobacterium leprae [TaxId: 1769]
Probab=94.23 E-value=0.16 Score=45.31 Aligned_cols=123 Identities=11% Similarity=0.034 Sum_probs=80.7
Q ss_pred hhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeChHHHHHHHHHHHHCCC--CCcEEEEEccccc
Q 014247 95 VRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDASDIAVQANEVVKANNL--TDKVIVLHGRVED 172 (428)
Q Consensus 95 ~r~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s~~~~~a~~~~~~~~~--~~~v~~~~~d~~~ 172 (428)
.|+..+-+.+.+.+.... ..|+.+|||.=.-...+......+++=||..++++.-++.+.+.+. ..+..++..|+.+
T Consensus 73 ~Rtr~~D~~~~~~~~~g~-~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~ 151 (297)
T d2uyoa1 73 VRTNFFDTYFNNAVIDGI-RQFVILASGLDSRAYRLDWPTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQ 151 (297)
T ss_dssp HHHHHHHHHHHHHHHTTC-CEEEEETCTTCCHHHHSCCCTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTS
T ss_pred HHHHHHHHHHHHHHhhCC-CeEEEeCcccCChhhhcCCCcCceEEEcCChHHHHHHHHHHHhcCCCCCceEEEecccccc
Confidence 445555555555553333 3556699998766665532223367777766787777777777654 3457888888764
Q ss_pred c-c-------C-CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCC
Q 014247 173 V-E-------I-DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYA 219 (428)
Q Consensus 173 l-~-------~-~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 219 (428)
- . + +...-+++++.+..++ .+.....+++.+..+..||..+++...
T Consensus 152 ~~~~~L~~~g~d~~~ptl~i~EGvl~YL-~~~~~~~ll~~i~~~~~~GS~l~~d~~ 206 (297)
T d2uyoa1 152 DWPPALRSAGFDPSARTAWLAEGLLMYL-PATAQDGLFTEIGGLSAVGSRIAVETS 206 (297)
T ss_dssp CHHHHHHHTTCCTTSCEEEEECSCGGGS-CHHHHHHHHHHHHHTCCTTCEEEEECC
T ss_pred hHHHHHHhcCCCCCCCEEEEEccccccC-CHHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 2 0 1 1445688888765444 455699999999999999999987643
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.14 E-value=0.079 Score=46.35 Aligned_cols=75 Identities=16% Similarity=0.198 Sum_probs=59.6
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC-----------
Q 014247 111 IEGKVVVDVGCGTGI---LSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI----------- 175 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~---ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~----------- 175 (428)
+++++||-.|++.|+ ++..+++.|+ +|+.++.+ +.++.+.+.++..+...++.++++|+.+...
T Consensus 8 lk~Kv~lITGas~GIG~aiA~~la~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~ 86 (257)
T d1xg5a_ 8 WRDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQ 86 (257)
T ss_dssp GTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHh
Confidence 678999999999985 5666777888 89999999 7778777777777776789999999876421
Q ss_pred CCceeEEEEec
Q 014247 176 DEEVDVIISEW 186 (428)
Q Consensus 176 ~~~~DlVvs~~ 186 (428)
-++.|++|.+.
T Consensus 87 ~g~iD~lVnnA 97 (257)
T d1xg5a_ 87 HSGVDICINNA 97 (257)
T ss_dssp HCCCSEEEECC
T ss_pred cCCCCEEEecc
Confidence 16789988764
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=93.64 E-value=0.056 Score=48.82 Aligned_cols=68 Identities=16% Similarity=0.238 Sum_probs=52.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC--CceeEEEEec
Q 014247 111 IEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID--EEVDVIISEW 186 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~--~~~DlVvs~~ 186 (428)
..+.+|||+=||.|.+++-+.++|.+-|.++|++ ..++..+.+.. + ..++|+.++... ..+|+|+..+
T Consensus 9 ~~~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~~~~~~N~~-----~---~~~~Di~~~~~~~~~~~Dll~ggp 79 (327)
T d2c7pa1 9 LTGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFG-----E---KPEGDITQVNEKTIPDHDILCAGF 79 (327)
T ss_dssp TTTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHS-----C---CCBSCGGGSCGGGSCCCSEEEEEC
T ss_pred CCCCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHCC-----C---CCcCchhcCchhhcceeeeeeccc
Confidence 4678999999999999999999999778899999 66666555542 1 125788887543 5799999865
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=93.63 E-value=0.035 Score=49.77 Aligned_cols=58 Identities=9% Similarity=0.111 Sum_probs=46.6
Q ss_pred HHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHC
Q 014247 98 ETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKAN 157 (428)
Q Consensus 98 ~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~ 157 (428)
..+.+.+.+... .+|..|||.=||+|..+..+.+.|- +.+|+|++ +.++.|++++...
T Consensus 237 ~~L~~rlI~~~s-~~gdiVlDpF~GSGTT~~AA~~lgR-~~Ig~El~~~y~~~a~~Rl~~~ 295 (320)
T d1booa_ 237 AKLPEFFIRMLT-EPDDLVVDIFGGSNTTGLVAERESR-KWISFEMKPEYVAASAFRFLDN 295 (320)
T ss_dssp THHHHHHHHHHC-CTTCEEEETTCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHGGGSCS
T ss_pred hHHHHHhhhhcc-cCCCEEEecCCCCcHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHHHhc
Confidence 345555555543 6889999999999999999988876 89999999 9999998876543
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=93.55 E-value=0.069 Score=47.86 Aligned_cols=66 Identities=18% Similarity=0.208 Sum_probs=50.6
Q ss_pred CEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC--CceeEEEEec
Q 014247 114 KVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID--EEVDVIISEW 186 (428)
Q Consensus 114 ~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~--~~~DlVvs~~ 186 (428)
.+|||+=||.|.+++-+.++|.+.+.++|++ ..++..+.+ .. -.++.+|+.++... ..+|+++..+
T Consensus 1 mk~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~~~N-----~~--~~~~~~Di~~~~~~~~~~~dll~~g~ 69 (324)
T d1dcta_ 1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESN-----HS--AKLIKGDISKISSDEFPKCDGIIGGP 69 (324)
T ss_dssp CEEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHHHHH-----CC--SEEEESCTTTSCGGGSCCCSEEEECC
T ss_pred CeEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHHHHHHHH-----CC--CCCccCChhhCCHhHcccccEEeecc
Confidence 4799999999999998888899888899999 555444443 22 35678999987553 5799999854
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=93.54 E-value=0.23 Score=39.83 Aligned_cols=85 Identities=14% Similarity=0.070 Sum_probs=55.8
Q ss_pred CEEEEEcCCC--cHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEEecchhh
Q 014247 114 KVVVDVGCGT--GILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWMGYM 190 (428)
Q Consensus 114 ~~VLDiGcGt--G~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~~~~~~ 190 (428)
++|.=||+|. +.++..+.+.|. +|++.|.+ +.++.|++ .+..+ ....+.+.+ ...|+|+...
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~g~-~V~~~d~~~~~~~~a~~----~~~~~---~~~~~~~~~---~~~DiIilav---- 65 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQSTCEKAVE----RQLVD---EAGQDLSLL---QTAKIIFLCT---- 65 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHH----TTSCS---EEESCGGGG---TTCSEEEECS----
T ss_pred CEEEEEeecHHHHHHHHHHHHCCC-EEEEEECCchHHHHHHH----hhccc---eeeeecccc---cccccccccC----
Confidence 3677888884 345666777777 89999999 66655543 33322 122233222 5789998633
Q ss_pred hcchhhHHHHHHHHhcccccCeEEE
Q 014247 191 LLYESMLGSVITARDRWLKRGGLIL 215 (428)
Q Consensus 191 l~~~~~~~~~l~~~~~~LkpgG~lv 215 (428)
.......+++++...|+++.+++
T Consensus 66 --p~~~~~~vl~~l~~~l~~~~iv~ 88 (165)
T d2f1ka2 66 --PIQLILPTLEKLIPHLSPTAIVT 88 (165)
T ss_dssp --CHHHHHHHHHHHGGGSCTTCEEE
T ss_pred --cHhhhhhhhhhhhhhccccccee
Confidence 23457788999999999888775
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=93.48 E-value=0.025 Score=46.88 Aligned_cols=97 Identities=12% Similarity=0.103 Sum_probs=61.8
Q ss_pred HHHhccCCCCCCEEEEEcCCC--cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccc------
Q 014247 103 AIMQNQSFIEGKVVVDVGCGT--GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVED------ 172 (428)
Q Consensus 103 ~i~~~~~~~~~~~VLDiGcGt--G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~------ 172 (428)
++.+.....+|++||-.|++. |..+..+++. |+ +|+++.-+ +-.+.+++ .+.. .++.-+-.+
T Consensus 20 al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga-~vi~~~~~~~~~~~~~~----~Ga~---~vi~~~~~~~~~~~~ 91 (182)
T d1v3va2 20 GLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKIAYLKQ----IGFD---AAFNYKTVNSLEEAL 91 (182)
T ss_dssp HHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----TTCS---EEEETTSCSCHHHHH
T ss_pred HHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHccCC-EEEEeCCCHHHHHHHHh----hhhh---hhcccccccHHHHHH
Confidence 455566678999999888865 4566667776 66 89999988 65555443 3432 222222111
Q ss_pred -ccCCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 173 -VEIDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 173 -l~~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
......+|+|+-.. . .+.++...++|+++|.++..
T Consensus 92 ~~~~~~Gvd~v~D~v-----G-----~~~~~~~~~~l~~~G~~v~~ 127 (182)
T d1v3va2 92 KKASPDGYDCYFDNV-----G-----GEFLNTVLSQMKDFGKIAIC 127 (182)
T ss_dssp HHHCTTCEEEEEESS-----C-----HHHHHHHGGGEEEEEEEEEC
T ss_pred HHhhcCCCceeEEec-----C-----chhhhhhhhhccCCCeEEee
Confidence 11236799998632 1 23466778999999988853
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=93.09 E-value=0.082 Score=46.30 Aligned_cols=59 Identities=17% Similarity=0.183 Sum_probs=47.6
Q ss_pred HHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHC
Q 014247 97 TETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKAN 157 (428)
Q Consensus 97 ~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~ 157 (428)
...+.+.+.+... .+|..|||.=||+|..+..+.+.|- +.+|+|++ ...+.|++++...
T Consensus 193 P~~L~~~~I~~~s-~~gdiVLDpF~GSGTT~~Aa~~lgR-~~ig~El~~~y~~~a~~Ri~~~ 252 (279)
T d1eg2a_ 193 PAAVIERLVRALS-HPGSTVLDFFAGSGVTARVAIQEGR-NSICTDAAPVFKEYYQKQLTFL 252 (279)
T ss_dssp CHHHHHHHHHHHS-CTTCEEEETTCTTCHHHHHHHHHTC-EEEEEESSTHHHHHHHHHHHHC
T ss_pred chhHHHHHHHhhc-CCCCEEEecCCCCcHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHh
Confidence 3445555555443 6899999999999999998888866 99999999 9999999988753
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.98 E-value=0.14 Score=44.59 Aligned_cols=74 Identities=23% Similarity=0.330 Sum_probs=54.8
Q ss_pred CCCEEEEEcCCCcH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC-----------C
Q 014247 112 EGKVVVDVGCGTGI---LSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI-----------D 176 (428)
Q Consensus 112 ~~~~VLDiGcGtG~---ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~-----------~ 176 (428)
.|+++|--|++.|+ ++..+++.|+ +|+.+|.+ +-++.+.+.+....-..++.++.+|+.+... -
T Consensus 2 ~GKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (254)
T d2gdza1 2 NGKVALVTGAAQGIGRAFAEALLLKGA-KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF 80 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHc
Confidence 57899999998875 5666777888 89999999 7766666555443334568999999877421 1
Q ss_pred CceeEEEEec
Q 014247 177 EEVDVIISEW 186 (428)
Q Consensus 177 ~~~DlVvs~~ 186 (428)
++.|++|.+.
T Consensus 81 G~iDilVnnA 90 (254)
T d2gdza1 81 GRLDILVNNA 90 (254)
T ss_dssp SCCCEEEECC
T ss_pred CCcCeecccc
Confidence 6899999865
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=92.51 E-value=0.18 Score=40.63 Aligned_cols=87 Identities=17% Similarity=0.214 Sum_probs=54.7
Q ss_pred EEEEEcCCC-c-HHHHHHHHcCC-CeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEEecchhh
Q 014247 115 VVVDVGCGT-G-ILSIFCAQAGA-KRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISEWMGYM 190 (428)
Q Consensus 115 ~VLDiGcGt-G-~ls~~la~~g~-~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~~~~~~ 190 (428)
+|+=||||. | .++..+.+.|. .+|+|+|.+ +.++.|++. +..+ ....+..... ....|+|+...
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~----~~~~---~~~~~~~~~~-~~~~dlIila~---- 70 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL----GIID---EGTTSIAKVE-DFSPDFVMLSS---- 70 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT----TSCS---EEESCGGGGG-GTCCSEEEECS----
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHh----hcch---hhhhhhhhhh-ccccccccccC----
Confidence 588899985 2 35556666664 489999999 777666543 3322 1212222211 14679998643
Q ss_pred hcchhhHHHHHHHHhcccccCeEEE
Q 014247 191 LLYESMLGSVITARDRWLKRGGLIL 215 (428)
Q Consensus 191 l~~~~~~~~~l~~~~~~LkpgG~lv 215 (428)
.......++.++...++++..++
T Consensus 71 --p~~~~~~vl~~l~~~~~~~~ii~ 93 (171)
T d2g5ca2 71 --PVRTFREIAKKLSYILSEDATVT 93 (171)
T ss_dssp --CHHHHHHHHHHHHHHSCTTCEEE
T ss_pred --Cchhhhhhhhhhhcccccccccc
Confidence 23446778888888898887665
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.50 E-value=0.11 Score=42.93 Aligned_cols=98 Identities=14% Similarity=0.174 Sum_probs=59.3
Q ss_pred HHhccCCCCC--CEEEEEc--CCCcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccc----
Q 014247 104 IMQNQSFIEG--KVVVDVG--CGTGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDV---- 173 (428)
Q Consensus 104 i~~~~~~~~~--~~VLDiG--cGtG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l---- 173 (428)
+.......++ ++||-.| .|.|..+..+|+. |+..|+++..+ +....+ ....+.. .++...-.++
T Consensus 20 l~~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l---~~~~gad---~vi~~~~~~~~~~~ 93 (187)
T d1vj1a2 20 VQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFL---TSELGFD---AAVNYKTGNVAEQL 93 (187)
T ss_dssp HHHHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHH---HHHSCCS---EEEETTSSCHHHHH
T ss_pred HHHHhCCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhh---hhcccce---EEeeccchhHHHHH
Confidence 3344344555 7899877 4578899999985 88788888777 544332 2223332 2332221111
Q ss_pred --cCCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 174 --EIDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 174 --~~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
..+..+|+|+-.. . ...+....+.|+++|+++..
T Consensus 94 ~~~~~~GvDvv~D~v-----G-----g~~~~~~~~~l~~~G~iv~~ 129 (187)
T d1vj1a2 94 REACPGGVDVYFDNV-----G-----GDISNTVISQMNENSHIILC 129 (187)
T ss_dssp HHHCTTCEEEEEESS-----C-----HHHHHHHHTTEEEEEEEEEC
T ss_pred HHHhccCceEEEecC-----C-----chhHHHHhhhccccccEEEe
Confidence 1136799998632 1 13456778899999998854
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=92.19 E-value=0.06 Score=43.97 Aligned_cols=92 Identities=18% Similarity=0.208 Sum_probs=56.4
Q ss_pred cCCCCCCEEEEEcC-C-CcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccc-ccccCCCceeEE
Q 014247 108 QSFIEGKVVVDVGC-G-TGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRV-EDVEIDEEVDVI 182 (428)
Q Consensus 108 ~~~~~~~~VLDiGc-G-tG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~-~~l~~~~~~DlV 182 (428)
....++++||-.|+ | .|.++..+++. |+ +|++++.+ +-.+.+++ .|... + +-..+. ........+|+|
T Consensus 23 ~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~-~vi~~~~~~~~~~~~~~----lGa~~-~-i~~~~~~~~~~~~~g~D~v 95 (171)
T d1iz0a2 23 AQARPGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKLALPLA----LGAEE-A-ATYAEVPERAKAWGGLDLV 95 (171)
T ss_dssp TTCCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSGGGSHHHHH----TTCSE-E-EEGGGHHHHHHHTTSEEEE
T ss_pred hCCCCCCEEEEEeccccchhhhhhhhccccc-ccccccccccccccccc----cccce-e-eehhhhhhhhhcccccccc
Confidence 45689999999885 3 35677777776 77 89999988 65555543 34332 1 111111 112223679999
Q ss_pred EEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 183 ISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 183 vs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
+-. .+ .. +....+.|+|+|+++..
T Consensus 96 ~d~-~G------~~----~~~~~~~l~~~G~~v~~ 119 (171)
T d1iz0a2 96 LEV-RG------KE----VEESLGLLAHGGRLVYI 119 (171)
T ss_dssp EEC-SC------TT----HHHHHTTEEEEEEEEEC
T ss_pred ccc-cc------hh----HHHHHHHHhcCCcEEEE
Confidence 862 12 11 34456789999988853
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=92.00 E-value=0.17 Score=41.69 Aligned_cols=101 Identities=16% Similarity=0.079 Sum_probs=56.6
Q ss_pred HHHhccCCCCCCEEEEEcCCC---cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEc---cccccc
Q 014247 103 AIMQNQSFIEGKVVVDVGCGT---GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHG---RVEDVE 174 (428)
Q Consensus 103 ~i~~~~~~~~~~~VLDiGcGt---G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~---d~~~l~ 174 (428)
++.......+|.+||-+.+|+ |..+..+|+. |+ +|+++--+ +..+...+.+++.|-.. ++.- +..++.
T Consensus 19 ~l~~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga-~vI~~v~~~~~~~~~~~~~~~lGad~---vi~~~~~~~~~~~ 94 (189)
T d1gu7a2 19 MLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNF-NSISVIRDRPNLDEVVASLKELGATQ---VITEDQNNSREFG 94 (189)
T ss_dssp HHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTC-EEEEEECCCTTHHHHHHHHHHHTCSE---EEEHHHHHCGGGH
T ss_pred HHHHHhCCCCCCEEEEEeCCCchHHHHHHHHHhhcCC-eEEEEEecccccchHHhhhhhccccE---EEeccccchhHHH
Confidence 444555678888888884443 4566667776 88 67766433 44444344445555432 2222 211110
Q ss_pred ---------CCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 175 ---------IDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 175 ---------~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
....+|+|+-.. . . ..+....+.|+|+|+++..
T Consensus 95 ~~v~~~~~~~g~~vdvv~D~v-----g-~----~~~~~~~~~l~~~G~~v~~ 136 (189)
T d1gu7a2 95 PTIKEWIKQSGGEAKLALNCV-----G-G----KSSTGIARKLNNNGLMLTY 136 (189)
T ss_dssp HHHHHHHHHHTCCEEEEEESS-----C-H----HHHHHHHHTSCTTCEEEEC
T ss_pred HHHHHHHhhccCCceEEEECC-----C-c----chhhhhhhhhcCCcEEEEE
Confidence 125689998532 1 1 1234556789999998853
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=91.95 E-value=0.28 Score=42.63 Aligned_cols=75 Identities=21% Similarity=0.252 Sum_probs=57.9
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC-----------
Q 014247 111 IEGKVVVDVGCGTGI---LSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI----------- 175 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~---ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~----------- 175 (428)
++|+++|--|++.|+ ++..+++.|+ +|+.+|.+ +.++.+.+.+...+...++..+.+|+.+...
T Consensus 2 l~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~ 80 (258)
T d1iy8a_ 2 FTDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTER 80 (258)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHH
Confidence 578999999999885 6778888898 89999999 7777766666555555568899999876421
Q ss_pred CCceeEEEEec
Q 014247 176 DEEVDVIISEW 186 (428)
Q Consensus 176 ~~~~DlVvs~~ 186 (428)
-++.|++|.+.
T Consensus 81 ~G~iDiLVnnA 91 (258)
T d1iy8a_ 81 FGRIDGFFNNA 91 (258)
T ss_dssp HSCCSEEEECC
T ss_pred hCCCCEEEECC
Confidence 16899999864
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=91.76 E-value=0.086 Score=48.42 Aligned_cols=22 Identities=14% Similarity=0.184 Sum_probs=19.6
Q ss_pred hHHHHHHHHhcccccCeEEEcc
Q 014247 196 MLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 196 ~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
|+..+|+...+-|+|||++++.
T Consensus 187 D~~~FL~~Ra~ELv~GG~mvl~ 208 (359)
T d1m6ex_ 187 DHALFLRCRAQEVVPGGRMVLT 208 (359)
T ss_dssp HHHHHHHHHHHHBCTTCEEEEE
T ss_pred HHHHHHHHHHHHhcCCcEEEEE
Confidence 6788999999999999999874
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=91.52 E-value=0.49 Score=40.99 Aligned_cols=73 Identities=16% Similarity=0.191 Sum_probs=55.9
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc------------
Q 014247 111 IEGKVVVDVGCGTGI---LSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE------------ 174 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~---ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~------------ 174 (428)
.+|+++|--|++.|+ ++..+++.|+ +|+.+|.+ +-++.+.+.+...+ .++.++.+|+.+..
T Consensus 6 L~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~ 82 (259)
T d2ae2a_ 6 LEGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRNQKELNDCLTQWRSKG--FKVEASVCDLSSRSERQELMNTVANH 82 (259)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC--CCceEEEeeCCCHHHHHHHHHHHHHH
Confidence 579999999999885 5677778888 89999999 77777777776654 35888899987531
Q ss_pred CCCceeEEEEec
Q 014247 175 IDEEVDVIISEW 186 (428)
Q Consensus 175 ~~~~~DlVvs~~ 186 (428)
+..+.|++|.+.
T Consensus 83 ~~~~idilvnnA 94 (259)
T d2ae2a_ 83 FHGKLNILVNNA 94 (259)
T ss_dssp TTTCCCEEEECC
T ss_pred hCCCceEEEECC
Confidence 124799999864
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=91.46 E-value=0.055 Score=44.62 Aligned_cols=100 Identities=18% Similarity=0.157 Sum_probs=54.6
Q ss_pred CCCEEEEEcCCC-cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCC---C--CcEEEEEccccccc---------
Q 014247 112 EGKVVVDVGCGT-GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNL---T--DKVIVLHGRVEDVE--------- 174 (428)
Q Consensus 112 ~~~~VLDiGcGt-G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~---~--~~v~~~~~d~~~l~--------- 174 (428)
++.+||-||+|. |..+...|.. |+ +|+++|.+ ..++..+......-. . ...+-..+.+.++.
T Consensus 28 ~pa~VvViGaGvaG~~Aa~~A~~lGA-~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~ 106 (183)
T d1l7da1 28 PPARVLVFGVGVAGLQAIATAKRLGA-VVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAE 106 (183)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHH
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHcCC-EEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHH
Confidence 567999999997 4555555554 77 99999999 766555443211000 0 00000000011110
Q ss_pred ---C-CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEE
Q 014247 175 ---I-DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLIL 215 (428)
Q Consensus 175 ---~-~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv 215 (428)
. -...|+|++.. .......+.-+-+++.+.+|||.+++
T Consensus 107 ~l~~~l~~aDlVI~ta---lipG~~aP~lit~~mv~~Mk~GSVIV 148 (183)
T d1l7da1 107 AVLKELVKTDIAITTA---LIPGKPAPVLITEEMVTKMKPGSVII 148 (183)
T ss_dssp HHHHHHTTCSEEEECC---CCTTSCCCCCSCHHHHTTSCTTCEEE
T ss_pred HHHHHHHhhhhheeee---ecCCcccceeehHHHHHhcCCCcEEE
Confidence 0 04689999854 33333323334456778899999887
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=91.37 E-value=0.066 Score=44.08 Aligned_cols=99 Identities=12% Similarity=0.075 Sum_probs=58.1
Q ss_pred HHhccCCCCCCEEEEEcCCC--cHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccc-c--cCC
Q 014247 104 IMQNQSFIEGKVVVDVGCGT--GILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVED-V--EID 176 (428)
Q Consensus 104 i~~~~~~~~~~~VLDiGcGt--G~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~-l--~~~ 176 (428)
+.......++.+||--|++. |.++..+++. |+ +|+++--+ +-.+.+++. |....+.. ..+..+ . ..+
T Consensus 23 L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga-~Viat~~s~~k~~~~~~l----Ga~~vi~~-~~~~~~~~~~~~~ 96 (176)
T d1xa0a2 23 LEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGY-TVEASTGKAAEHDYLRVL----GAKEVLAR-EDVMAERIRPLDK 96 (176)
T ss_dssp HHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCTTCHHHHHHT----TCSEEEEC-C---------CCS
T ss_pred HHHhCCCCCCCEEEEEeccchHHHHHHHHHHHcCC-ceEEecCchHHHHHHHhc----ccceeeec-chhHHHHHHHhhc
Confidence 34444556788999998655 4677777776 66 78888887 666655542 33221111 111111 1 123
Q ss_pred CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccC
Q 014247 177 EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSY 218 (428)
Q Consensus 177 ~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~ 218 (428)
+.+|+|+-.. + . ..+....+.|+|||+++...
T Consensus 97 ~gvD~vid~v-g-----g----~~~~~~l~~l~~~Griv~~G 128 (176)
T d1xa0a2 97 QRWAAAVDPV-G-----G----RTLATVLSRMRYGGAVAVSG 128 (176)
T ss_dssp CCEEEEEECS-T-----T----TTHHHHHHTEEEEEEEEECS
T ss_pred cCcCEEEEcC-C-----c----hhHHHHHHHhCCCceEEEee
Confidence 7899988633 1 1 12455667899999998654
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=91.32 E-value=0.57 Score=40.54 Aligned_cols=73 Identities=19% Similarity=0.262 Sum_probs=55.9
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc------------
Q 014247 111 IEGKVVVDVGCGTGI---LSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE------------ 174 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~---ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~------------ 174 (428)
.+|++||-.|+..|. ++..+++.|+ +|+.++.+ +-++.+.+.+...+. .+.++.+|+.+..
T Consensus 4 L~gK~alITGas~GIG~aia~~la~~G~-~V~i~~r~~~~l~~~~~~~~~~~~--~~~~~~~D~s~~~~~~~~~~~~~~~ 80 (258)
T d1ae1a_ 4 LKGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREKGL--NVEGSVCDLLSRTERDKLMQTVAHV 80 (258)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC--CceEEEeecCCHHHHHHHHHHHHHH
Confidence 579999999999874 5667778888 89999999 777777777776653 4788889987642
Q ss_pred CCCceeEEEEec
Q 014247 175 IDEEVDVIISEW 186 (428)
Q Consensus 175 ~~~~~DlVvs~~ 186 (428)
..+..|+++.+.
T Consensus 81 ~~g~idilinna 92 (258)
T d1ae1a_ 81 FDGKLNILVNNA 92 (258)
T ss_dssp TTSCCCEEEECC
T ss_pred hCCCcEEEeccc
Confidence 125688888743
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=90.63 E-value=0.47 Score=38.98 Aligned_cols=78 Identities=19% Similarity=0.140 Sum_probs=52.1
Q ss_pred HhccCCCCCCEEEEEcCCCcH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccc---c-CC
Q 014247 105 MQNQSFIEGKVVVDVGCGTGI---LSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDV---E-ID 176 (428)
Q Consensus 105 ~~~~~~~~~~~VLDiGcGtG~---ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l---~-~~ 176 (428)
...-...++++||-.|++.|. ++..+++.|+ +|+.++.+ +-++.+.+.+..+. ++.+...|+.+. . .-
T Consensus 15 ~~~~~~l~gK~vlItGasgGIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~d~~~~~~~~~~~ 90 (191)
T d1luaa1 15 KAAGGSVKGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRKLDKAQAAADSVNKRF---KVNVTAAETADDASRAEAV 90 (191)
T ss_dssp HHTTSCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHH---TCCCEEEECCSHHHHHHHT
T ss_pred HHcCCCCCCCEEEEECCCHHHHHHHHHHHHhhcc-chhhcccchHHHHHHHHHHHhcc---chhhhhhhcccHHHHHHHh
Confidence 333446789999999988874 5667778888 89999999 77666655554432 234444554432 1 12
Q ss_pred CceeEEEEec
Q 014247 177 EEVDVIISEW 186 (428)
Q Consensus 177 ~~~DlVvs~~ 186 (428)
+..|+|+.+.
T Consensus 91 ~~iDilin~A 100 (191)
T d1luaa1 91 KGAHFVFTAG 100 (191)
T ss_dssp TTCSEEEECC
T ss_pred cCcCeeeecC
Confidence 6789998764
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.40 E-value=0.11 Score=46.90 Aligned_cols=68 Identities=15% Similarity=0.116 Sum_probs=49.6
Q ss_pred CCEEEEEcCCCcHHHHHHHHcCCC--eEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccCC----CceeEEEEe
Q 014247 113 GKVVVDVGCGTGILSIFCAQAGAK--RVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEID----EEVDVIISE 185 (428)
Q Consensus 113 ~~~VLDiGcGtG~ls~~la~~g~~--~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~----~~~DlVvs~ 185 (428)
..+|+|+-||.|.+++-+.++|.. -|.++|++ ..++..+.+. . ...++.+|+.++... ..+|+++..
T Consensus 2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~-----~-~~~~~~~di~~~~~~~~~~~~~Dll~gg 75 (343)
T d1g55a_ 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNF-----P-HTQLLAKTIEGITLEEFDRLSFDMILMS 75 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHC-----T-TSCEECSCGGGCCHHHHHHHCCSEEEEC
T ss_pred CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHC-----C-CCCcccCchhhCCHhHcCCCCccEEEee
Confidence 358999999999999888777864 47799999 5555544432 1 256777888876542 478999985
Q ss_pred c
Q 014247 186 W 186 (428)
Q Consensus 186 ~ 186 (428)
+
T Consensus 76 p 76 (343)
T d1g55a_ 76 P 76 (343)
T ss_dssp C
T ss_pred c
Confidence 5
|
| >d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: FkbM-like domain: Methyltransferase FkbM species: Methylobacillus flagellatus [TaxId: 405]
Probab=90.13 E-value=0.48 Score=43.91 Aligned_cols=59 Identities=17% Similarity=0.184 Sum_probs=45.0
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHc---CCCeEEEEeCh-HHHHHHHHHHHHCCCCC---cEEEEEc
Q 014247 110 FIEGKVVVDVGCGTGILSIFCAQA---GAKRVYAVDAS-DIAVQANEVVKANNLTD---KVIVLHG 168 (428)
Q Consensus 110 ~~~~~~VLDiGcGtG~ls~~la~~---g~~~V~giD~s-~~~~~a~~~~~~~~~~~---~v~~~~~ 168 (428)
..++.+++|||+-.|..+..+++. ...+|+++|++ ......++++..+...+ ++.++..
T Consensus 210 l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~~~n~~~~I~~~~~ 275 (395)
T d2py6a1 210 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGC 275 (395)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECS
T ss_pred cCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhcccccccceEEEEEE
Confidence 346789999999999988776653 23589999999 88888899888776543 4555543
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=90.08 E-value=0.52 Score=40.80 Aligned_cols=73 Identities=19% Similarity=0.262 Sum_probs=56.5
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC-----------
Q 014247 111 IEGKVVVDVGCGTGI---LSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI----------- 175 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~---ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~----------- 175 (428)
++|+++|--|.+.|+ .+..+++.|+ +|+.+|.+ +.++.+.+.++..+ .++..+.+|+.+...
T Consensus 3 L~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (260)
T d1zema1 3 FNGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMNREALEKAEASVREKG--VEARSYVCDVTSEEAVIGTVDSVVRD 79 (260)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTT--SCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 578999999998885 5677788888 89999999 77877777776654 358889999876421
Q ss_pred CCceeEEEEec
Q 014247 176 DEEVDVIISEW 186 (428)
Q Consensus 176 ~~~~DlVvs~~ 186 (428)
-+..|++|.+.
T Consensus 80 ~g~iDilVnna 90 (260)
T d1zema1 80 FGKIDFLFNNA 90 (260)
T ss_dssp HSCCCEEEECC
T ss_pred hCCCCeehhhh
Confidence 16899998753
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=89.92 E-value=0.48 Score=41.04 Aligned_cols=73 Identities=15% Similarity=0.112 Sum_probs=56.0
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc------------
Q 014247 111 IEGKVVVDVGCGTGI---LSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE------------ 174 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~---ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~------------ 174 (428)
.+|+++|--|++.|+ .+..+++.|+ +|+.++.+ +-++.+.+.+...+. ++..+.+|+.+..
T Consensus 6 LkgK~alVTGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~~ 82 (259)
T d1xq1a_ 6 LKAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCARNEYELNECLSKWQKKGF--QVTGSVCDASLRPEREKLMQTVSSM 82 (259)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC--ceEEEeccCCCHHHHHHHHHHHHHH
Confidence 578999999999885 6677788888 89999999 777776666666543 5889999987532
Q ss_pred CCCceeEEEEec
Q 014247 175 IDEEVDVIISEW 186 (428)
Q Consensus 175 ~~~~~DlVvs~~ 186 (428)
+.++.|+++.+.
T Consensus 83 ~~g~idilvnnA 94 (259)
T d1xq1a_ 83 FGGKLDILINNL 94 (259)
T ss_dssp HTTCCSEEEEEC
T ss_pred hCCCcccccccc
Confidence 125789999864
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=89.84 E-value=0.14 Score=41.54 Aligned_cols=97 Identities=16% Similarity=0.136 Sum_probs=57.8
Q ss_pred HHhccCCCCCCEEEEEcCC--CcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccc--c--cC
Q 014247 104 IMQNQSFIEGKVVVDVGCG--TGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVED--V--EI 175 (428)
Q Consensus 104 i~~~~~~~~~~~VLDiGcG--tG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~--l--~~ 175 (428)
+.+.-...++..||--|++ -|.++..+|+. |+ +|+++.-+ +-.+.+++. |.. ..+-..|... + ..
T Consensus 15 L~~~g~~~~~~~VLV~gaaGgVG~~avQlAk~~Ga-~Viat~~s~~k~~~~~~l----Gad--~vi~~~~~~~~~~~~~~ 87 (167)
T d1tt7a2 15 LEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGY-DVVASTGNREAADYLKQL----GAS--EVISREDVYDGTLKALS 87 (167)
T ss_dssp HHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTC-CEEEEESSSSTHHHHHHH----TCS--EEEEHHHHCSSCCCSSC
T ss_pred HHHhcCCCCCCEEEEeCCcchHHHHHHHHHHHcCC-ceEEEecCHHHHHHHHhh----ccc--ceEeccchhchhhhccc
Confidence 3343334456678877753 45677777876 87 89999988 766665543 332 1111111111 1 11
Q ss_pred CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 176 DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 176 ~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
.+.+|+|+-.. . ...+.+..+.|+|+|+++..
T Consensus 88 ~~gvd~vid~v-----g-----g~~~~~~~~~l~~~G~iv~~ 119 (167)
T d1tt7a2 88 KQQWQGAVDPV-----G-----GKQLASLLSKIQYGGSVAVS 119 (167)
T ss_dssp CCCEEEEEESC-----C-----THHHHHHHTTEEEEEEEEEC
T ss_pred CCCceEEEecC-----c-----HHHHHHHHHHhccCceEEEe
Confidence 36799988642 1 12455677899999998854
|
| >d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Leucine carboxy methyltransferase Ppm1 domain: Leucine carboxy methyltransferase Ppm1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.70 E-value=0.57 Score=42.18 Aligned_cols=118 Identities=19% Similarity=0.206 Sum_probs=73.3
Q ss_pred hhHHHHHHHHHhccCCCCCCEEEEEcCCCcHHHHHHHHcCCCeEEEEeCh--HHHHHHHHHHHHCC--------------
Q 014247 95 VRTETYRAAIMQNQSFIEGKVVVDVGCGTGILSIFCAQAGAKRVYAVDAS--DIAVQANEVVKANN-------------- 158 (428)
Q Consensus 95 ~r~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~giD~s--~~~~~a~~~~~~~~-------------- 158 (428)
.|...+...+.+.+...+...|+-+|||.=.....+..... .+.-+|++ ++++.=++.++++.
T Consensus 79 ~Rt~~id~~v~~Fl~~~~~~QVV~LGaG~DTr~~Rl~~~~~-~~~~~EvD~p~vi~~K~~~i~~~~~l~~~l~~~~~~~~ 157 (328)
T d1rjda_ 79 LRTVGIDAAILEFLVANEKVQVVNLGCGSDLRMLPLLQMFP-HLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTA 157 (328)
T ss_dssp HHHHHHHHHHHHHHHHCSSEEEEEETCTTCCTHHHHHHHCT-TEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCC
T ss_pred HHHHHHHHHHHHHHHHCCCcEEEEeCCccchHHHHhhccCC-CcEEEECCcHHHHHHHHHHHHhchhhhhhccccccccc
Confidence 46666666666665445667899999999877777765423 45555555 44444333443321
Q ss_pred ------CCCcEEEEEcccccccC----------CCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEE
Q 014247 159 ------LTDKVIVLHGRVEDVEI----------DEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLIL 215 (428)
Q Consensus 159 ------~~~~v~~~~~d~~~l~~----------~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv 215 (428)
..++..++.+|+.++.. +...-+++++.+...+ .......+++.+.+.... |.++
T Consensus 158 ~~~~~~~s~~y~lv~~DL~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl-~~~~~~~li~~~~~~f~~-~~~i 228 (328)
T d1rjda_ 158 KSPFLIDQGRYKLAACDLNDITETTRLLDVCTKREIPTIVISECLLCYM-HNNESQLLINTIMSKFSH-GLWI 228 (328)
T ss_dssp CTTEEEECSSEEEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGS-CHHHHHHHHHHHHHHCSS-EEEE
T ss_pred cccccCCCCCeEEEecCCCCcHhhHHHHHccCCCCCCeEEEEeeehhcC-CHHHHHHHHHHHHHhCCC-ceEE
Confidence 13467888888876421 1445689999855444 344578888888776654 5444
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=89.66 E-value=0.43 Score=41.67 Aligned_cols=75 Identities=21% Similarity=0.311 Sum_probs=58.0
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCC-CcEEEEEcccccccC----------
Q 014247 111 IEGKVVVDVGCGTGI---LSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLT-DKVIVLHGRVEDVEI---------- 175 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~---ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~-~~v~~~~~d~~~l~~---------- 175 (428)
++|+++|-.|++.|+ ++..+++.|+ +|+.+|.+ +-++.+.+.+...+.. .++.++.+|+.+...
T Consensus 3 L~gK~alVTGas~GIG~aia~~la~~Ga-~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 81 (272)
T d1xkqa_ 3 FSNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLK 81 (272)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCcCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 678999999999884 5677788888 89999999 8788877777766543 468999999876421
Q ss_pred -CCceeEEEEec
Q 014247 176 -DEEVDVIISEW 186 (428)
Q Consensus 176 -~~~~DlVvs~~ 186 (428)
-++.|++|.+.
T Consensus 82 ~~g~iDilvnnA 93 (272)
T d1xkqa_ 82 QFGKIDVLVNNA 93 (272)
T ss_dssp HHSCCCEEEECC
T ss_pred HhCCceEEEeCC
Confidence 16789999763
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.66 E-value=0.71 Score=39.57 Aligned_cols=74 Identities=18% Similarity=0.192 Sum_probs=57.4
Q ss_pred CCCCCEEEEEcCCCcH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC----------
Q 014247 110 FIEGKVVVDVGCGTGI---LSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI---------- 175 (428)
Q Consensus 110 ~~~~~~VLDiGcGtG~---ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~---------- 175 (428)
...|++||--|++.|. ++..+++.|+ +|+.+|.+ +-++...+.+...+ .++..+.+|+.+...
T Consensus 4 ~l~Gkv~lITGas~GIG~~ia~~la~~G~-~V~l~~r~~~~l~~~~~~~~~~~--~~~~~~~~Dvs~~~~v~~~~~~i~~ 80 (244)
T d1yb1a_ 4 SVTGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINKHGLEETAAKCKGLG--AKVHTFVVDCSNREDIYSSAKKVKA 80 (244)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHH
Confidence 3678999999999985 6777888888 89999999 77777666666554 468899999887521
Q ss_pred -CCceeEEEEec
Q 014247 176 -DEEVDVIISEW 186 (428)
Q Consensus 176 -~~~~DlVvs~~ 186 (428)
-+..|+++.+.
T Consensus 81 ~~g~idilinna 92 (244)
T d1yb1a_ 81 EIGDVSILVNNA 92 (244)
T ss_dssp HTCCCSEEEECC
T ss_pred HcCCCceeEeec
Confidence 26789988754
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=89.49 E-value=0.28 Score=39.57 Aligned_cols=50 Identities=30% Similarity=0.350 Sum_probs=35.6
Q ss_pred HHHhccCCCCCCEEEEEcCCCcHH-HHHHHH-cCCCeEEEEeCh-HHHHHHHH
Q 014247 103 AIMQNQSFIEGKVVVDVGCGTGIL-SIFCAQ-AGAKRVYAVDAS-DIAVQANE 152 (428)
Q Consensus 103 ~i~~~~~~~~~~~VLDiGcGtG~l-s~~la~-~g~~~V~giD~s-~~~~~a~~ 152 (428)
++.+.....++++||-+|||.+.+ +..+++ .++.+|+++|.+ +-++.|++
T Consensus 19 a~~~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~ 71 (175)
T d1cdoa2 19 AAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV 71 (175)
T ss_dssp HHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred HHHHhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHH
Confidence 444555678999999999998543 333333 478899999999 66665554
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.40 E-value=0.66 Score=40.39 Aligned_cols=101 Identities=17% Similarity=0.124 Sum_probs=65.3
Q ss_pred CCEE-EEEcCCCcH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC-----------C
Q 014247 113 GKVV-VDVGCGTGI---LSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI-----------D 176 (428)
Q Consensus 113 ~~~V-LDiGcGtG~---ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~-----------~ 176 (428)
|++| |-=|+++|+ ++..+++.+..+|+.++.+ +-++.+.+.++..+. ++.++.+|+.+... -
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dvs~~~sv~~~~~~~~~~~ 79 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGL--SPRFHQLDIDDLQSIRALRDFLRKEY 79 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTC--CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEEecCCHHHHHHHHHHHHHhc
Confidence 5666 445777664 3455666533489999999 888887777776654 47889999877531 1
Q ss_pred CceeEEEEecchhhhc---ch---hh-----------HHHHHHHHhcccccCeEEEc
Q 014247 177 EEVDVIISEWMGYMLL---YE---SM-----------LGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 177 ~~~DlVvs~~~~~~l~---~~---~~-----------~~~~l~~~~~~LkpgG~lv~ 216 (428)
++.|++|.+. +.... .+ .+ .-.+.+.+...|+++|+++.
T Consensus 80 g~iDiLVnNA-Gi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivn 135 (275)
T d1wmaa1 80 GGLDVLVNNA-GIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVN 135 (275)
T ss_dssp SSEEEEEECC-CCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEE
T ss_pred CCcEEEEEcC-CcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 6899999875 11100 00 01 22446667788899998764
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=89.17 E-value=0.54 Score=37.86 Aligned_cols=94 Identities=18% Similarity=0.164 Sum_probs=56.6
Q ss_pred CEEEEEcCCCcH--HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHC--CCCCcEE----EEEcccccccCCCceeEEEE
Q 014247 114 KVVVDVGCGTGI--LSIFCAQAGAKRVYAVDAS-DIAVQANEVVKAN--NLTDKVI----VLHGRVEDVEIDEEVDVIIS 184 (428)
Q Consensus 114 ~~VLDiGcGtG~--ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~--~~~~~v~----~~~~d~~~l~~~~~~DlVvs 184 (428)
++|--||+|... ++..|+++|. +|+.+|.+ ..++..++.-... ....... ....|..+.- ..+|+|+.
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~--~~aD~iii 78 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALKGQ-SVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAV--KDADVILI 78 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHH--TTCSEEEE
T ss_pred CEEEEECccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHh--cCCCEEEE
Confidence 578889999753 5666777787 89999998 6655443321000 0000000 1111111111 56899996
Q ss_pred ecchhhhcchhhHHHHHHHHhcccccCeEEEc
Q 014247 185 EWMGYMLLYESMLGSVITARDRWLKRGGLILP 216 (428)
Q Consensus 185 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~ 216 (428)
.. .......++.++...|+++..++.
T Consensus 79 ~v------~~~~~~~~~~~i~~~l~~~~~iv~ 104 (184)
T d1bg6a2 79 VV------PAIHHASIAANIASYISEGQLIIL 104 (184)
T ss_dssp CS------CGGGHHHHHHHHGGGCCTTCEEEE
T ss_pred EE------chhHHHHHHHHhhhccCCCCEEEE
Confidence 32 334578889999999999987664
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=88.97 E-value=0.56 Score=40.97 Aligned_cols=75 Identities=19% Similarity=0.331 Sum_probs=57.9
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCC-CCcEEEEEcccccccC----------
Q 014247 111 IEGKVVVDVGCGTGI---LSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNL-TDKVIVLHGRVEDVEI---------- 175 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~---ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~-~~~v~~~~~d~~~l~~---------- 175 (428)
++|+++|--|++.|+ .+..+++.|+ +|+.+|.+ +-++.+.+.+...+. ..++..+.+|+.+...
T Consensus 2 L~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 80 (274)
T d1xhla_ 2 FSGKSVIITGSSNGIGRSAAVIFAKEGA-QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLA 80 (274)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHH
Confidence 578999999999885 5677778888 89999999 777777777776654 3468999999876421
Q ss_pred -CCceeEEEEec
Q 014247 176 -DEEVDVIISEW 186 (428)
Q Consensus 176 -~~~~DlVvs~~ 186 (428)
-++.|+++.+.
T Consensus 81 ~~G~iDilVnnA 92 (274)
T d1xhla_ 81 KFGKIDILVNNA 92 (274)
T ss_dssp HHSCCCEEEECC
T ss_pred HcCCceEEEeec
Confidence 16789999864
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=88.78 E-value=0.55 Score=40.72 Aligned_cols=75 Identities=17% Similarity=0.251 Sum_probs=57.3
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCC-CCcEEEEEcccccccC----------
Q 014247 111 IEGKVVVDVGCGTGI---LSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNL-TDKVIVLHGRVEDVEI---------- 175 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~---ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~-~~~v~~~~~d~~~l~~---------- 175 (428)
++|+++|--|++.|+ .+..+++.|+ +|+.+|.+ +.++.+.+.+...+. ..++.++.+|+.+...
T Consensus 3 l~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~ 81 (264)
T d1spxa_ 3 FAEKVAIITGSSNGIGRATAVLFAREGA-KVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLG 81 (264)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHH
Confidence 578999999999885 5677778888 89999999 777777777766654 3468999999876421
Q ss_pred -CCceeEEEEec
Q 014247 176 -DEEVDVIISEW 186 (428)
Q Consensus 176 -~~~~DlVvs~~ 186 (428)
-++.|++|.+.
T Consensus 82 ~~g~iDilvnnA 93 (264)
T d1spxa_ 82 KFGKLDILVNNA 93 (264)
T ss_dssp HHSCCCEEEECC
T ss_pred HhCCCCEeeccc
Confidence 16899988763
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.51 E-value=1.4 Score=36.07 Aligned_cols=100 Identities=15% Similarity=0.248 Sum_probs=66.7
Q ss_pred CEEEEEcCCCc--HHHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHC-------CCC--------------CcEEEEEcc
Q 014247 114 KVVVDVGCGTG--ILSIFCAQAGAKRVYAVDAS-DIAVQANEVVKAN-------NLT--------------DKVIVLHGR 169 (428)
Q Consensus 114 ~~VLDiGcGtG--~ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~-------~~~--------------~~v~~~~~d 169 (428)
++|--||+|+= .++..++.+|. .|+.+|.+ +.++.+++.+... +.. .++.+.. |
T Consensus 5 kkvaViGaG~mG~~iA~~~a~~G~-~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~-d 82 (192)
T d1f0ya2 5 KHVTVIGGGLMGAGIAQVAAATGH-TVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATST-D 82 (192)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEES-C
T ss_pred EEEEEECcCHHHHHHHHHHHhCCC-cEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccc-h
Confidence 57899999972 35677777888 89999999 8888877765432 221 1122221 2
Q ss_pred cccccCCCceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEccCCee
Q 014247 170 VEDVEIDEEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPSYATL 221 (428)
Q Consensus 170 ~~~l~~~~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 221 (428)
..+. -...|+|+-. .......-.++++++.++++++.++.-++..+
T Consensus 83 ~~~a--~~~ad~ViEa----v~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l 128 (192)
T d1f0ya2 83 AASV--VHSTDLVVEA----IVENLKVKNELFKRLDKFAAEHTIFASNTSSL 128 (192)
T ss_dssp HHHH--TTSCSEEEEC----CCSCHHHHHHHHHHHTTTSCTTCEEEECCSSS
T ss_pred hHhh--hcccceehhh----cccchhHHHHHHHHHhhhcccCceeeccCccc
Confidence 2111 1457888853 34445557889999999999998887665544
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=88.35 E-value=0.59 Score=40.62 Aligned_cols=73 Identities=21% Similarity=0.298 Sum_probs=53.5
Q ss_pred CCCCCEEEEEcCCCcH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC----------
Q 014247 110 FIEGKVVVDVGCGTGI---LSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI---------- 175 (428)
Q Consensus 110 ~~~~~~VLDiGcGtG~---ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~---------- 175 (428)
..+|+++|-.|++.|+ ++..+++.|+ +|+.+|.+ +-++.+.+.+.. .+++.++.+|+.+...
T Consensus 3 rL~gKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~ 78 (268)
T d2bgka1 3 RLQDKVAIITGGAGGIGETTAKLFVRYGA-KVVIADIADDHGQKVCNNIGS---PDVISFVHCDVTKDEDVRNLVDTTIA 78 (268)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCC---TTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhcC---CCceEEEEccCCCHHHHHHHHHHHHH
Confidence 3688999999999885 4666777788 89999999 666665554432 3458889999876421
Q ss_pred -CCceeEEEEec
Q 014247 176 -DEEVDVIISEW 186 (428)
Q Consensus 176 -~~~~DlVvs~~ 186 (428)
-++.|++|.+.
T Consensus 79 ~~g~iD~lVnnA 90 (268)
T d2bgka1 79 KHGKLDIMFGNV 90 (268)
T ss_dssp HHSCCCEEEECC
T ss_pred HcCCcceecccc
Confidence 16889999754
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.39 E-value=1.2 Score=39.20 Aligned_cols=76 Identities=18% Similarity=0.285 Sum_probs=55.6
Q ss_pred CCCCCEEEEEcCCCcH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCC---CCCcEEEEEcccccccC-------
Q 014247 110 FIEGKVVVDVGCGTGI---LSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANN---LTDKVIVLHGRVEDVEI------- 175 (428)
Q Consensus 110 ~~~~~~VLDiGcGtG~---ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~---~~~~v~~~~~d~~~l~~------- 175 (428)
..+|+++|--|++.|+ ++..+++.|+ +|+.+|.+ +-++.+.+.+.... ...++.++.+|+.+...
T Consensus 9 ~L~gKvalITGas~GIG~aia~~la~~Ga-~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~ 87 (297)
T d1yxma1 9 LLQGQVAIVTGGATGIGKAIVKELLELGS-NVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKS 87 (297)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHH
Confidence 4689999999999885 4566777888 89999999 76666655555431 23468899999876421
Q ss_pred ----CCceeEEEEec
Q 014247 176 ----DEEVDVIISEW 186 (428)
Q Consensus 176 ----~~~~DlVvs~~ 186 (428)
-++.|++|.+.
T Consensus 88 ~~~~~G~iDiLVnnA 102 (297)
T d1yxma1 88 TLDTFGKINFLVNNG 102 (297)
T ss_dssp HHHHHSCCCEEEECC
T ss_pred HHHHhCCeEEEEeec
Confidence 16799999764
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=86.34 E-value=1 Score=38.58 Aligned_cols=74 Identities=20% Similarity=0.273 Sum_probs=55.0
Q ss_pred CCCCCEEEEEcCCCcH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC----------
Q 014247 110 FIEGKVVVDVGCGTGI---LSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI---------- 175 (428)
Q Consensus 110 ~~~~~~VLDiGcGtG~---ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~---------- 175 (428)
..+++++|-.|++.|+ ++..+++.|+ +|+.+|.+ +.++.+.+.++..+ .++.++.+|+.+...
T Consensus 7 ~lenKvalITGas~GIG~a~a~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~~ 83 (251)
T d2c07a1 7 CGENKVALVTGAGRGIGREIAKMLAKSVS-HVICISRTQKSCDSVVDEIKSFG--YESSGYAGDVSKKEEISEVINKILT 83 (251)
T ss_dssp CCSSCEEEEESTTSHHHHHHHHHHTTTSS-EEEEEESSHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHH
Confidence 3578999999988874 4555666687 89999999 77777777776654 358899999876421
Q ss_pred -CCceeEEEEec
Q 014247 176 -DEEVDVIISEW 186 (428)
Q Consensus 176 -~~~~DlVvs~~ 186 (428)
-++.|++|.+.
T Consensus 84 ~~g~iDilvnna 95 (251)
T d2c07a1 84 EHKNVDILVNNA 95 (251)
T ss_dssp HCSCCCEEEECC
T ss_pred hcCCceeeeecc
Confidence 16899988754
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=85.88 E-value=0.99 Score=38.81 Aligned_cols=73 Identities=23% Similarity=0.376 Sum_probs=55.1
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC-----------
Q 014247 111 IEGKVVVDVGCGTGI---LSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI----------- 175 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~---ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~----------- 175 (428)
.+|+++|--|++.|+ .+..+++.|+ +|+.++.+ +-++.+.+.++..+ .++.++.+|+.+...
T Consensus 9 L~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~l~~~g--~~~~~~~~Dvs~~~~~~~~~~~~~~~ 85 (255)
T d1fmca_ 9 LDGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLG--GQAFACRCDITSEQELSALADFAISK 85 (255)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 578999999988875 4566677788 89999999 77777777776654 358889999876421
Q ss_pred CCceeEEEEec
Q 014247 176 DEEVDVIISEW 186 (428)
Q Consensus 176 ~~~~DlVvs~~ 186 (428)
-++.|+++.+.
T Consensus 86 ~g~iDilvnnA 96 (255)
T d1fmca_ 86 LGKVDILVNNA 96 (255)
T ss_dssp HSSCCEEEECC
T ss_pred cCCCCEeeeCC
Confidence 16899988864
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=85.74 E-value=1.4 Score=33.36 Aligned_cols=61 Identities=21% Similarity=0.368 Sum_probs=41.0
Q ss_pred CEEEEEcCCCcHHHHHHH----HcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC-----CCceeEEE
Q 014247 114 KVVVDVGCGTGILSIFCA----QAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI-----DEEVDVII 183 (428)
Q Consensus 114 ~~VLDiGcGtG~ls~~la----~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~-----~~~~DlVv 183 (428)
++|+=+|+| .++..++ +.|. .|+.+|.+ +.++.+.+. . .+.++.+|..+... -..+|.++
T Consensus 1 M~IvI~G~G--~~G~~la~~L~~~g~-~v~vid~d~~~~~~~~~~---~----~~~vi~Gd~~~~~~l~~~~i~~a~~vv 70 (132)
T d1lssa_ 1 MYIIIAGIG--RVGYTLAKSLSEKGH-DIVLIDIDKDICKKASAE---I----DALVINGDCTKIKTLEDAGIEDADMYI 70 (132)
T ss_dssp CEEEEECCS--HHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHH---C----SSEEEESCTTSHHHHHHTTTTTCSEEE
T ss_pred CEEEEECCC--HHHHHHHHHHHHCCC-CcceecCChhhhhhhhhh---h----hhhhccCcccchhhhhhcChhhhhhhc
Confidence 367777775 4554444 4465 89999999 777655432 1 26789999876432 26789988
Q ss_pred E
Q 014247 184 S 184 (428)
Q Consensus 184 s 184 (428)
+
T Consensus 71 ~ 71 (132)
T d1lssa_ 71 A 71 (132)
T ss_dssp E
T ss_pred c
Confidence 7
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.41 E-value=1.2 Score=37.92 Aligned_cols=69 Identities=23% Similarity=0.221 Sum_probs=49.9
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc-------CCCce
Q 014247 111 IEGKVVVDVGCGTGI---LSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE-------IDEEV 179 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~---ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~-------~~~~~ 179 (428)
..|+++|-.|++.|. ++..+++.|+ +|+.+|.+ +-++.+.+. . ..+..++.|+.+.. .-++.
T Consensus 5 L~GK~~lITGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~---~---~~~~~~~~Dv~d~~~v~~~~~~~g~i 77 (244)
T d1pr9a_ 5 LAGRRVLVTGAGKGIGRGTVQALHATGA-RVVAVSRTQADLDSLVRE---C---PGIEPVCVDLGDWEATERALGSVGPV 77 (244)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHH---S---TTCEEEECCTTCHHHHHHHHTTCCCC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHh---c---CCCeEEEEeCCCHHHHHHHHHHhCCc
Confidence 689999999999884 5677778888 89999999 655544332 2 13678888886632 12689
Q ss_pred eEEEEec
Q 014247 180 DVIISEW 186 (428)
Q Consensus 180 DlVvs~~ 186 (428)
|++|.+.
T Consensus 78 DilVnnA 84 (244)
T d1pr9a_ 78 DLLVNNA 84 (244)
T ss_dssp CEEEECC
T ss_pred eEEEecc
Confidence 9998754
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=85.39 E-value=1.2 Score=40.57 Aligned_cols=73 Identities=16% Similarity=0.207 Sum_probs=44.3
Q ss_pred CCCCCCEEEEEcCCCcHHHHHHHHc-C-------CCeEEEEeChHHH-HHHHHHHHHCCCCCcEEEEEcccccccCCCce
Q 014247 109 SFIEGKVVVDVGCGTGILSIFCAQA-G-------AKRVYAVDASDIA-VQANEVVKANNLTDKVIVLHGRVEDVEIDEEV 179 (428)
Q Consensus 109 ~~~~~~~VLDiGcGtG~ls~~la~~-g-------~~~V~giD~s~~~-~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~ 179 (428)
...+...|+|+|+|+|.++.-+.+. . ..+++.+|.|+.+ ...++.+. .. .++.++ .++..++ ...
T Consensus 76 ~~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~--~~-~~i~w~-~~~~~~~--~~~ 149 (365)
T d1zkda1 76 DEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLA--GI-RNIHWH-DSFEDVP--EGP 149 (365)
T ss_dssp TCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHST--TC-SSEEEE-SSGGGSC--CSS
T ss_pred CCCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhc--cc-ccceec-cChhhcc--cCC
Confidence 3344568999999999998776553 1 2268999999444 33333322 22 235544 4555554 334
Q ss_pred eEEEEecc
Q 014247 180 DVIISEWM 187 (428)
Q Consensus 180 DlVvs~~~ 187 (428)
-+|+|+-+
T Consensus 150 g~iiaNE~ 157 (365)
T d1zkda1 150 AVILANEY 157 (365)
T ss_dssp EEEEEESS
T ss_pred eEEEeccc
Confidence 67888663
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=85.14 E-value=1.6 Score=37.45 Aligned_cols=71 Identities=17% Similarity=0.203 Sum_probs=53.9
Q ss_pred CCEEEEEcCCCcH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC-----------CC
Q 014247 113 GKVVVDVGCGTGI---LSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI-----------DE 177 (428)
Q Consensus 113 ~~~VLDiGcGtG~---ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~-----------~~ 177 (428)
|+++|--|++.|+ ++..+++.|+ +|+.+|.+ +.++.+.+.++..+. ++.++.+|+.+... -+
T Consensus 2 gKValITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~l~~~g~--~~~~~~~Dvs~~~~v~~~~~~~~~~~g 78 (257)
T d2rhca1 2 SEVALVTGATSGIGLEIARRLGKEGL-RVFVCARGEEGLRTTLKELREAGV--EADGRTCDVRSVPEIEALVAAVVERYG 78 (257)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC--cEEEEEeecCCHHHHHHHHHHHHHHhC
Confidence 6788888988875 5677778888 89999999 777777777766543 58899999876421 16
Q ss_pred ceeEEEEec
Q 014247 178 EVDVIISEW 186 (428)
Q Consensus 178 ~~DlVvs~~ 186 (428)
+.|++|.+.
T Consensus 79 ~iDilVnnA 87 (257)
T d2rhca1 79 PVDVLVNNA 87 (257)
T ss_dssp SCSEEEECC
T ss_pred CCCEEEecc
Confidence 799998753
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=84.72 E-value=1.3 Score=37.82 Aligned_cols=72 Identities=21% Similarity=0.316 Sum_probs=54.0
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC-----------
Q 014247 111 IEGKVVVDVGCGTGI---LSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI----------- 175 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~---ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~----------- 175 (428)
++|+++|--|++.|+ .+..+++.|+ +|+.+|.+ +.++.+.+.+. ...++.++.+|+.+...
T Consensus 4 L~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (251)
T d1zk4a1 4 LDGKVAIITGGTLGIGLAIATKFVEEGA-KVMITGRHSDVGEKAAKSVG---TPDQIQFFQHDSSDEDGWTKLFDATEKA 79 (251)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHC---CTTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhC---CCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 678999999988875 5677778888 89999999 77766655543 23468999999876421
Q ss_pred CCceeEEEEec
Q 014247 176 DEEVDVIISEW 186 (428)
Q Consensus 176 ~~~~DlVvs~~ 186 (428)
-++.|++|.+.
T Consensus 80 ~G~iDiLVnnA 90 (251)
T d1zk4a1 80 FGPVSTLVNNA 90 (251)
T ss_dssp HSSCCEEEECC
T ss_pred hCCceEEEecc
Confidence 16899988754
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=84.40 E-value=1.5 Score=37.57 Aligned_cols=73 Identities=18% Similarity=0.284 Sum_probs=52.9
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCeEEEEeCh-HHHHHHH-HHHHHCCCCCcEEEEEcccccccC----------
Q 014247 111 IEGKVVVDVGCGTGI---LSIFCAQAGAKRVYAVDAS-DIAVQAN-EVVKANNLTDKVIVLHGRVEDVEI---------- 175 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~---ls~~la~~g~~~V~giD~s-~~~~~a~-~~~~~~~~~~~v~~~~~d~~~l~~---------- 175 (428)
.+|+++|--|++.|+ .+..+++.|+ +|+.+|.+ +-++.+. +..+..+ .++.++.+|+.+...
T Consensus 3 l~gK~~lITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~ 79 (251)
T d1vl8a_ 3 LRGRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASRNLEEASEAAQKLTEKYG--VETMAFRCDVSNYEEVKKLLEAVKE 79 (251)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHC--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHhC--CcEEEEEccCCCHHHHHHHHHHHHH
Confidence 578999999999885 5677788888 89999998 6555544 4434433 358888999876421
Q ss_pred -CCceeEEEEec
Q 014247 176 -DEEVDVIISEW 186 (428)
Q Consensus 176 -~~~~DlVvs~~ 186 (428)
-++.|++|.+.
T Consensus 80 ~~g~iDiLVnnA 91 (251)
T d1vl8a_ 80 KFGKLDTVVNAA 91 (251)
T ss_dssp HHSCCCEEEECC
T ss_pred HcCCCCEEEECC
Confidence 16899999864
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=84.18 E-value=1.3 Score=37.80 Aligned_cols=71 Identities=18% Similarity=0.155 Sum_probs=52.2
Q ss_pred CCCCCEEEEEcCCCcH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC----------
Q 014247 110 FIEGKVVVDVGCGTGI---LSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI---------- 175 (428)
Q Consensus 110 ~~~~~~VLDiGcGtG~---ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~---------- 175 (428)
.++|+++|--|++.|+ ++..+++.|+ +|+.+|.+ +.++.+.+.+ .+++.++++|+.+...
T Consensus 3 ~L~gK~alITGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~~ 76 (244)
T d1nffa_ 3 RLTGKVALVSGGARGMGASHVRAMVAEGA-KVVFGDILDEEGKAMAAEL-----ADAARYVHLDVTQPAQWKAAVDTAVT 76 (244)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHT-----GGGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHh-----hCcceEEEeecCCHHHHHHHHHHHHH
Confidence 4678999999999885 5677778888 89999999 6655544432 2458889999876421
Q ss_pred -CCceeEEEEec
Q 014247 176 -DEEVDVIISEW 186 (428)
Q Consensus 176 -~~~~DlVvs~~ 186 (428)
-++.|+++.+.
T Consensus 77 ~~g~idilinnA 88 (244)
T d1nffa_ 77 AFGGLHVLVNNA 88 (244)
T ss_dssp HHSCCCEEEECC
T ss_pred HhCCCeEEEECC
Confidence 16789988754
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=84.10 E-value=1.3 Score=31.87 Aligned_cols=65 Identities=14% Similarity=0.206 Sum_probs=40.6
Q ss_pred CCCCEEEEEcC-CCc--HHHHHHHHcCCCeEEEEeCh--HHHHHHHHHHHHCCCCCcEEEEEcccccccCCCceeEEEEe
Q 014247 111 IEGKVVVDVGC-GTG--ILSIFCAQAGAKRVYAVDAS--DIAVQANEVVKANNLTDKVIVLHGRVEDVEIDEEVDVIISE 185 (428)
Q Consensus 111 ~~~~~VLDiGc-GtG--~ls~~la~~g~~~V~giD~s--~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~~~~~DlVvs~ 185 (428)
...++|.=||. |+| .++..+.+.|. +|+|.|.. +..+. +.+.| +.+..+...+.- ...|+||..
T Consensus 6 ~~~~~ihfiGigG~GMs~LA~~L~~~G~-~VsGSD~~~~~~~~~----L~~~G----i~v~~g~~~~~i--~~~d~vV~S 74 (96)
T d1p3da1 6 RRVQQIHFIGIGGAGMSGIAEILLNEGY-QISGSDIADGVVTQR----LAQAG----AKIYIGHAEEHI--EGASVVVVS 74 (96)
T ss_dssp TTCCEEEEETTTSTTHHHHHHHHHHHTC-EEEEEESCCSHHHHH----HHHTT----CEEEESCCGGGG--TTCSEEEEC
T ss_pred hhCCEEEEEEECHHHHHHHHHHHHhCCC-EEEEEeCCCChhhhH----HHHCC----CeEEECCccccC--CCCCEEEEC
Confidence 34567777763 344 56778888899 99999986 44432 23343 455555543322 457988865
Q ss_pred c
Q 014247 186 W 186 (428)
Q Consensus 186 ~ 186 (428)
.
T Consensus 75 ~ 75 (96)
T d1p3da1 75 S 75 (96)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=83.27 E-value=1.5 Score=38.16 Aligned_cols=74 Identities=22% Similarity=0.386 Sum_probs=52.7
Q ss_pred CCCCCEEEEEcCCCcH---HHHHHHHcCCCeEEEEeCh-HHHHHHHH-HHHHCCCCCcEEEEEcccccccC---------
Q 014247 110 FIEGKVVVDVGCGTGI---LSIFCAQAGAKRVYAVDAS-DIAVQANE-VVKANNLTDKVIVLHGRVEDVEI--------- 175 (428)
Q Consensus 110 ~~~~~~VLDiGcGtG~---ls~~la~~g~~~V~giD~s-~~~~~a~~-~~~~~~~~~~v~~~~~d~~~l~~--------- 175 (428)
.++|+++|--|++.|+ .+..+++.|+ +|+.+|.+ .-++.+.+ .....+ .++.++.+|+.+...
T Consensus 22 ~l~gK~alITGas~GIG~aiA~~la~~Ga-~Vii~~r~~~~l~~~~~~l~~~~g--~~~~~~~~D~~~~~~v~~~~~~~~ 98 (294)
T d1w6ua_ 22 SFQGKVAFITGGGTGLGKGMTTLLSSLGA-QCVIASRKMDVLKATAEQISSQTG--NKVHAIQCDVRDPDMVQNTVSELI 98 (294)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHS--SCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhcC--CceEEEEecccChHHHHHHhhhhh
Confidence 3678999999998883 5667777888 89999999 65555444 433333 358888899876421
Q ss_pred --CCceeEEEEec
Q 014247 176 --DEEVDVIISEW 186 (428)
Q Consensus 176 --~~~~DlVvs~~ 186 (428)
.+..|+++.+.
T Consensus 99 ~~~g~iDilvnnA 111 (294)
T d1w6ua_ 99 KVAGHPNIVINNA 111 (294)
T ss_dssp HHTCSCSEEEECC
T ss_pred hhccccchhhhhh
Confidence 26789988754
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.07 E-value=1.7 Score=36.83 Aligned_cols=69 Identities=20% Similarity=0.207 Sum_probs=49.2
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC-------CCce
Q 014247 111 IEGKVVVDVGCGTGI---LSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI-------DEEV 179 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~---ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~-------~~~~ 179 (428)
++|+++|--|++.|+ ++..+++.|+ +|+.+|.+ +-++.+.+. . ..+..+..|+.+... -++.
T Consensus 3 l~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~---~---~~~~~~~~Dv~~~~~v~~~~~~~g~i 75 (242)
T d1cyda_ 3 FSGLRALVTGAGKGIGRDTVKALHASGA-KVVAVTRTNSDLVSLAKE---C---PGIEPVCVDLGDWDATEKALGGIGPV 75 (242)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHH---S---TTCEEEECCTTCHHHHHHHHTTCCCC
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHh---c---CCCeEEEEeCCCHHHHHHHHHHcCCC
Confidence 578999999998885 5677777888 89999998 555443332 2 137788888876421 1689
Q ss_pred eEEEEec
Q 014247 180 DVIISEW 186 (428)
Q Consensus 180 DlVvs~~ 186 (428)
|++|.+.
T Consensus 76 DilVnnA 82 (242)
T d1cyda_ 76 DLLVNNA 82 (242)
T ss_dssp SEEEECC
T ss_pred eEEEECC
Confidence 9998753
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=82.81 E-value=1.3 Score=38.11 Aligned_cols=73 Identities=25% Similarity=0.233 Sum_probs=52.4
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCeEEEEeCh-HHHH-HHHHHHHHCCCCCcEEEEEcccccccC----------
Q 014247 111 IEGKVVVDVGCGTGI---LSIFCAQAGAKRVYAVDAS-DIAV-QANEVVKANNLTDKVIVLHGRVEDVEI---------- 175 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~---ls~~la~~g~~~V~giD~s-~~~~-~a~~~~~~~~~~~~v~~~~~d~~~l~~---------- 175 (428)
++|+++|--|++.|+ .+..+++.|+ +|+.+|.+ +-+. .+.+..+..+ .++.++.+|+.+...
T Consensus 7 l~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~ 83 (260)
T d1h5qa_ 7 FVNKTIIVTGGNRGIGLAFTRAVAAAGA-NVAVIYRSAADAVEVTEKVGKEFG--VKTKAYQCDVSNTDIVTKTIQQIDA 83 (260)
T ss_dssp CTTEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCTTHHHHHHHHHHHHT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHhC--CceEEEEccCCCHHHHHHHHHHHHH
Confidence 578999999988875 5677778888 89999998 5444 4444444433 358889999876421
Q ss_pred -CCceeEEEEec
Q 014247 176 -DEEVDVIISEW 186 (428)
Q Consensus 176 -~~~~DlVvs~~ 186 (428)
-++.|++|.+.
T Consensus 84 ~~g~iDilVnnA 95 (260)
T d1h5qa_ 84 DLGPISGLIANA 95 (260)
T ss_dssp HSCSEEEEEECC
T ss_pred HhCCCcEecccc
Confidence 16899988754
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=82.38 E-value=3.4 Score=33.15 Aligned_cols=96 Identities=15% Similarity=0.086 Sum_probs=54.9
Q ss_pred HHhccCCCCCCEEEEEcCC--CcHHHHHHHHc-CCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEccccccc---CC
Q 014247 104 IMQNQSFIEGKVVVDVGCG--TGILSIFCAQA-GAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVE---ID 176 (428)
Q Consensus 104 i~~~~~~~~~~~VLDiGcG--tG~ls~~la~~-g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~---~~ 176 (428)
+.+.....++..||-.|+. .|..+..+|+. |+ +|+++.-+ +..+.+++. |. -.++.-+-.+.. ..
T Consensus 23 l~~~g~~~~~~~vlV~gasGGVG~~aiQlAk~~Ga-~Via~~~~~~k~~~~~~l----Ga---d~vi~~~~~~~~~~l~~ 94 (177)
T d1o89a2 23 LEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGY-QVVAVSGRESTHEYLKSL----GA---SRVLPRDEFAESRPLEK 94 (177)
T ss_dssp HHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHHH----TE---EEEEEGGGSSSCCSSCC
T ss_pred HHHhCCCCCCCcEEEEEccccchHHHHHHHHHcCC-CeEEEecchhHHHHHHhh----cc---ccccccccHHHHHHHHh
Confidence 3333333445578866543 34566667776 77 79998888 766655543 22 233333222211 12
Q ss_pred CceeEEEEecchhhhcchhhHHHHHHHHhcccccCeEEEcc
Q 014247 177 EEVDVIISEWMGYMLLYESMLGSVITARDRWLKRGGLILPS 217 (428)
Q Consensus 177 ~~~DlVvs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lv~~ 217 (428)
..+|.|+-.. + ...+....+.|+++|+++..
T Consensus 95 ~~~~~vvD~V-g---------g~~~~~~l~~l~~~Griv~~ 125 (177)
T d1o89a2 95 QVWAGAIDTV-G---------DKVLAKVLAQMNYGGCVAAC 125 (177)
T ss_dssp CCEEEEEESS-C---------HHHHHHHHHTEEEEEEEEEC
T ss_pred hcCCeeEEEc-c---------hHHHHHHHHHhccccceEee
Confidence 5688876422 1 12456677889999999864
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=82.35 E-value=1.1 Score=35.86 Aligned_cols=50 Identities=26% Similarity=0.316 Sum_probs=35.0
Q ss_pred HHHhccCCCCCCEEEEEcCCCcH-HHHHHHH-cCCCeEEEEeCh-HHHHHHHH
Q 014247 103 AIMQNQSFIEGKVVVDVGCGTGI-LSIFCAQ-AGAKRVYAVDAS-DIAVQANE 152 (428)
Q Consensus 103 ~i~~~~~~~~~~~VLDiGcGtG~-ls~~la~-~g~~~V~giD~s-~~~~~a~~ 152 (428)
++.+.....+|++||-+|+|.+. ++..+++ .|+.+|+++|.+ .-.+.+++
T Consensus 19 al~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~ 71 (176)
T d2jhfa2 19 SAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKE 71 (176)
T ss_dssp HHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred HHHHhhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHH
Confidence 34455567899999999997543 3333344 477899999999 66666544
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=81.86 E-value=1.5 Score=37.58 Aligned_cols=71 Identities=25% Similarity=0.211 Sum_probs=51.6
Q ss_pred CCCCCEEEEEcCCCcH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC----------
Q 014247 110 FIEGKVVVDVGCGTGI---LSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI---------- 175 (428)
Q Consensus 110 ~~~~~~VLDiGcGtG~---ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~---------- 175 (428)
.++|+++|--|++.|. ++..+++.|+ +|+.+|.+ +-++.+.+. +..++.++.+|+.+...
T Consensus 2 dL~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~-----~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 75 (254)
T d1hdca_ 2 DLSGKTVIITGGARGLGAEAARQAVAAGA-RVVLADVLDEEGAATARE-----LGDAARYQHLDVTIEEDWQRVVAYARE 75 (254)
T ss_dssp CCCCSEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHT-----TGGGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHH-----hCCceEEEEcccCCHHHHHHHHHHHHH
Confidence 3678999999999984 5777778888 79999998 555443322 23568999999876421
Q ss_pred -CCceeEEEEec
Q 014247 176 -DEEVDVIISEW 186 (428)
Q Consensus 176 -~~~~DlVvs~~ 186 (428)
-++.|++|.+.
T Consensus 76 ~~g~iDilVnnA 87 (254)
T d1hdca_ 76 EFGSVDGLVNNA 87 (254)
T ss_dssp HHSCCCEEEECC
T ss_pred HcCCccEEEecC
Confidence 16789888754
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=81.83 E-value=1.9 Score=37.11 Aligned_cols=73 Identities=26% Similarity=0.359 Sum_probs=54.9
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCeEEEEeCh--HHHHHHHHHHHHCCCCCcEEEEEcccccccC----------
Q 014247 111 IEGKVVVDVGCGTGI---LSIFCAQAGAKRVYAVDAS--DIAVQANEVVKANNLTDKVIVLHGRVEDVEI---------- 175 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~---ls~~la~~g~~~V~giD~s--~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~---------- 175 (428)
.+|+++|-.|++.|+ ++..+++.|+ +|+.++.+ +.++.+.+.++..+. ++.++.+|+.+...
T Consensus 16 L~gK~~lITGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~~~~~~g~--~~~~~~~D~~~~~~v~~~~~~~~~ 92 (272)
T d1g0oa_ 16 LEGKVALVTGAGRGIGREMAMELGRRGC-KVIVNYANSTESAEEVVAAIKKNGS--DAACVKANVGVVEDIVRMFEEAVK 92 (272)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCchHHHHHHHHHHHhhCC--ceeeEeCCCCCHHHHHHHHHHHHH
Confidence 678999999999885 6777888888 79998876 566666666666654 58899999876321
Q ss_pred -CCceeEEEEec
Q 014247 176 -DEEVDVIISEW 186 (428)
Q Consensus 176 -~~~~DlVvs~~ 186 (428)
.++.|+++.+.
T Consensus 93 ~~g~idilV~na 104 (272)
T d1g0oa_ 93 IFGKLDIVCSNS 104 (272)
T ss_dssp HHSCCCEEEECC
T ss_pred HhCCCCcccccc
Confidence 16789988754
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=81.03 E-value=2.4 Score=35.80 Aligned_cols=71 Identities=25% Similarity=0.303 Sum_probs=51.4
Q ss_pred CCCCCEEEEEcCCCcH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC----------
Q 014247 110 FIEGKVVVDVGCGTGI---LSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI---------- 175 (428)
Q Consensus 110 ~~~~~~VLDiGcGtG~---ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~---------- 175 (428)
.++|+++|-.|++.|. ++..+++.|+ +|+.++.+ +.++.. .++ +..++.++++|+.+...
T Consensus 2 ~l~gK~alItGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~---~~~--~~~~~~~~~~Dls~~~~i~~~~~~i~~ 75 (241)
T d2a4ka1 2 RLSGKTILVTGAASGIGRAALDLFAREGA-SLVAVDREERLLAEA---VAA--LEAEAIAVVADVSDPKAVEAVFAEALE 75 (241)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH---HHT--CCSSEEEEECCTTSHHHHHHHHHHHHH
T ss_pred cCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH---HHH--cCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 3678999999999875 5666777788 89999999 654433 222 34568889999876421
Q ss_pred -CCceeEEEEec
Q 014247 176 -DEEVDVIISEW 186 (428)
Q Consensus 176 -~~~~DlVvs~~ 186 (428)
-++.|+++.+.
T Consensus 76 ~~g~iDiLinnA 87 (241)
T d2a4ka1 76 EFGRLHGVAHFA 87 (241)
T ss_dssp HHSCCCEEEEGG
T ss_pred HhCCccEecccc
Confidence 16799999864
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=80.99 E-value=2.7 Score=35.83 Aligned_cols=70 Identities=21% Similarity=0.288 Sum_probs=51.8
Q ss_pred CEEEEEcCCCcH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC-----------CCc
Q 014247 114 KVVVDVGCGTGI---LSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI-----------DEE 178 (428)
Q Consensus 114 ~~VLDiGcGtG~---ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~-----------~~~ 178 (428)
+++|--|++.|+ .+..+++.|+ +|+.+|.+ +-++.+.+.+...+ .++.++.+|+.+... -++
T Consensus 2 KValITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~i~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 78 (255)
T d1gega_ 2 KVALVTGAGQGIGKAIALRLVKDGF-AVAIADYNDATAKAVASEINQAG--GHAVAVKVDVSDRDQVFAAVEQARKTLGG 78 (255)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHTTC
T ss_pred CEEEEcCCccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHHhCC
Confidence 456778988875 5666777888 89999999 77777777676654 358889999876421 168
Q ss_pred eeEEEEec
Q 014247 179 VDVIISEW 186 (428)
Q Consensus 179 ~DlVvs~~ 186 (428)
.|++|.+.
T Consensus 79 iDilVnnA 86 (255)
T d1gega_ 79 FDVIVNNA 86 (255)
T ss_dssp CCEEEECC
T ss_pred ccEEEecc
Confidence 99999753
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=80.84 E-value=1.6 Score=37.26 Aligned_cols=62 Identities=21% Similarity=0.208 Sum_probs=45.4
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHH---cCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccc
Q 014247 111 IEGKVVVDVGCGTGI---LSIFCAQ---AGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDV 173 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~---ls~~la~---~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l 173 (428)
..|+++|--|++.|+ ++..+|+ .|+ +|+.++.+ +.++.+.+.+...+...++.++.+|+.+.
T Consensus 4 L~gKvalITGas~GIG~aiA~~lA~~~~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvs~~ 72 (259)
T d1oaaa_ 4 LGCAVCVLTGASRGFGRALAPQLARLLSPGS-VMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTE 72 (259)
T ss_dssp CBSEEEEESSCSSHHHHHHHHHHHTTBCTTC-EEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHhcccCCC-EEEEEECCHHHHHHHHHHHHhhcCCceEEEEEccCCCH
Confidence 567777777888875 4455565 356 89999999 77777777666655556799999998763
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.67 E-value=1.8 Score=37.01 Aligned_cols=70 Identities=23% Similarity=0.268 Sum_probs=50.8
Q ss_pred CCCCCEEEEEcCCCcH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC----------
Q 014247 110 FIEGKVVVDVGCGTGI---LSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI---------- 175 (428)
Q Consensus 110 ~~~~~~VLDiGcGtG~---ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~---------- 175 (428)
.++|+++|--|++.|+ ++..+++.|+ +|+.+|.+ +.++...+.. .++.++.+|+.+...
T Consensus 3 rl~GK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~~------~~~~~~~~Dvs~~~~v~~~~~~~~~ 75 (250)
T d1ydea1 3 RYAGKVVVVTGGGRGIGAGIVRAFVNSGA-RVVICDKDESGGRALEQEL------PGAVFILCDVTQEDDVKTLVSETIR 75 (250)
T ss_dssp TTTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHC------TTEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhc------CCCeEEEccCCCHHHHHHHHHHHHH
Confidence 3679999999999884 5677777888 89999999 6555443321 247888899876421
Q ss_pred -CCceeEEEEec
Q 014247 176 -DEEVDVIISEW 186 (428)
Q Consensus 176 -~~~~DlVvs~~ 186 (428)
-++.|++|.+.
T Consensus 76 ~~g~iDilVnnA 87 (250)
T d1ydea1 76 RFGRLDCVVNNA 87 (250)
T ss_dssp HHSCCCEEEECC
T ss_pred hcCCCCEEEecc
Confidence 16789999864
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=80.38 E-value=2 Score=36.69 Aligned_cols=70 Identities=20% Similarity=0.292 Sum_probs=51.6
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC-----------
Q 014247 111 IEGKVVVDVGCGTGI---LSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI----------- 175 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~---ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~----------- 175 (428)
++|+++|--|++.|+ .+..+++.|+ +|+.+|.+ +.++.+.+.+ ..++.++.+|+.+...
T Consensus 3 L~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~-----~~~~~~~~~Dvt~~~~v~~~~~~~~~~ 76 (256)
T d1k2wa_ 3 LDGKTALITGSARGIGRAFAEAYVREGA-RVAIADINLEAARATAAEI-----GPAACAIALDVTDQASIDRCVAELLDR 76 (256)
T ss_dssp TTTEEEEEETCSSHHHHHHHHHHHHTTE-EEEEEESCHHHHHHHHHHH-----CTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHh-----CCceEEEEeeCCCHHHHHHHHHHHHHH
Confidence 578999999999884 5677777888 89999999 6665544433 2358889999876421
Q ss_pred CCceeEEEEec
Q 014247 176 DEEVDVIISEW 186 (428)
Q Consensus 176 ~~~~DlVvs~~ 186 (428)
-++.|++|.+.
T Consensus 77 ~g~iDilVnnA 87 (256)
T d1k2wa_ 77 WGSIDILVNNA 87 (256)
T ss_dssp HSCCCEEEECC
T ss_pred hCCccEEEeec
Confidence 16899998864
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=80.36 E-value=2 Score=36.49 Aligned_cols=70 Identities=26% Similarity=0.288 Sum_probs=51.1
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHHcCCCeEEEEeCh-HHHHHHHHHHHHCCCCCcEEEEEcccccccC-----------
Q 014247 111 IEGKVVVDVGCGTGI---LSIFCAQAGAKRVYAVDAS-DIAVQANEVVKANNLTDKVIVLHGRVEDVEI----------- 175 (428)
Q Consensus 111 ~~~~~VLDiGcGtG~---ls~~la~~g~~~V~giD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~l~~----------- 175 (428)
++|+++|--|++.|. ++..+++.|+ +|+.+|.+ +.++...+.+. .++..+.+|+.+...
T Consensus 2 l~gK~alITGas~GIG~a~a~~l~~~G~-~Vv~~~r~~~~l~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~ 75 (243)
T d1q7ba_ 2 FEGKIALVTGASRGIGRAIAETLAARGA-KVIGTATSENGAQAISDYLG-----ANGKGLMLNVTDPASIESVLEKIRAE 75 (243)
T ss_dssp CTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHG-----GGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhC-----CCCcEEEEEecCHHHhhhhhhhhhcc
Confidence 578999999998874 5667777888 89999999 66665555442 247788889876421
Q ss_pred CCceeEEEEec
Q 014247 176 DEEVDVIISEW 186 (428)
Q Consensus 176 ~~~~DlVvs~~ 186 (428)
-++.|++|.+.
T Consensus 76 ~g~iDilVnnA 86 (243)
T d1q7ba_ 76 FGEVDILVNNA 86 (243)
T ss_dssp TCSCSEEEECC
T ss_pred cCCcceehhhh
Confidence 16899998754
|