Citrus Sinensis ID: 014256

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------43
Protein Sequence
MAKHNRDQALDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGNSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKTLEKYGKSGMKVNGHEVRAVRNTIQKTGVAEIQDLTISKKTENKNLRDESKTEGQRDGSGANATHISGLDKRNHRTKKAVLDASVQELATRATSRAVAEAAKNITPPKSAYEFEVSWRGFAGDHALQARLLKAISPNALPQIFKNALSASILIDIVKVVATFFTGEVDLAIKYLEYLTMVPRFDLVIMCLSLADKADLRKVWDETFCNESTPIEYAEILDNLRSKYCLSQ
Secondary Structure (PSIPRED)
cccccccccccHHHHccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccccHHHHHHHHHHcHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHccccHHHHHHHHHHcccccHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHccccccHHHHHHHccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHHHHHHHcccccccHHccHHHHHHHHcccccccccccccccccccccccccHccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHcccccccccccHHHHcccccccccccccHHHHHcccccccccccccccccccccHHHHHHHcccccHHHHccccccccccHHHHHcccccccHHHHHHHHHHHcccHHHHHHHHHHcccccHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHEEEEEcccccHHHHHHHHHHHHHccccccccHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
makhnrdqaldWDLSLNEKDKKMkhkasskdnlvssslksakkpspsgnsysrnydpvshissslmneestpdatsekelgnecfkqKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKTLEKYgksgmkvngheVRAVRNTIQKTGVAEIQDLTiskktenknlrdesktegqrdgsganathisgldkrnhrtkKAVLDASVQELATRATSRAVAEAaknitppksayefevswrgfagdHALQARLLKaispnalpQIFKNALSASILIDIVKVVATFFTGEVDLAIKYLEYLTMVPRFDLVIMCLSLADKADLRKVWdetfcnestpiEYAEILDNLRSKYCLSQ
Flexible Loop (DISEMBL)
makhnrdqaldwdlsLNEKDKKMkhkasskdnlvssslksakkpspsgnsysrnyDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGklkesiedsefalrlepqnqEIKKQLAEVKSLYEKEVFQKASKTLekygksgmkvnghevravrntiqktgvaeiqdltiskktenknlrdesktegqrdgsganathisgldkrnhrTKKAVLDASVQELATRATSRAvaeaaknitppksAYEFEVSWRGFAGDHALQARLLKAISPNALPQIFKNALSASILIDIVKVVATFFTGEVDLAIKYLEYLTMVPRFDLVIMCLSLADKADLRKVWDETFCNESTPIEYAEILDNLRSKYCLSQ
Low Complexity Region (SEG)
MAKHNRDQALDWDLSLNEkdkkmkhkasskdNLVssslksakkpspsGNSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKTLEKYGKSGMKVNGHEVRAVRNTIQKTGVAEIQDLTISKKTENKNLRDESKTEGQRDGSGANATHISGLDKRNHRTKKAVLDASVQELATRATSRAVAEAAKNITPPKSAYEFEVSWRGFAGDHALQARLLKAISPNALPQIFKNALSASILIDIVKVVATFFTGEVDLAIKYLEYLTMVPRFDLVIMCLSLADKADLRKVWDETFCNESTPIEYAEILDNLRSKYCLSQ
Disordered region (IsUnstruct)
***********************************************************************************CFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYS*********************************************************************VRAVRNTIQKTGVA******************************************************************************SAYEFEVSWRGFAGDHALQARLLKAISPNALPQIFKNALSASILIDIVKVVATFFTGEVDLAIKYLEYLTMVPRFDLVIMCLSLADKADLRKVWDETFCNESTPIEYAEILDNLRSKYC***
Disordered Region (DISOPRED)
******D***********************************************************************ELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSL**********************************************************************************************************************KSAYEFEVSWRGFAGDHALQARLLKAISPNALPQIFKNALSASILIDIVKVVATFFTGEVDLAIKYLEYLTMVPRFDLVIMCLSLADKADLRKVWDETFCNES***EYAEILDNLRSKYCLS*
Disordered Region (DISEMBL)
********ALDWDLSLNEK*******************************YSRNYDPVSHIS*****************LGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKTLEKYGKSGMKVNGHEVRAVRNTIQKTGVAEIQDLTISKKTENK*****************NATHISGLDKRNHRTKKAVLDASVQELATRATSRAVAEAAKNITPPKSAYEFEVSWRGFAGDHALQARLLKAISPNALPQIFKNALSASILIDIVKVVATFFTGEVDLAIKYLEYLTMVPRFDLVIMCLSLADKADLRKVWDETFCNESTPIEYAEILDNLRSKYCLSQ
Disordered Region (DISPRO)
********ALDWDLSLNEKDKKMKH*******************************************ESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQ**************************************************************************************************RAVAEAAKNITPPKSAYEFEVSWRGFAGDHALQARLLKAISPNALPQIFKNALSASILIDIVKVVATFFTGEVDLAIKYLEYLTMVPRFDLVIMCLSLADKADLRKVWDETFCNESTPIEYAEILDNLRSKYCLS*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAKHNRDQALDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGNSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKTLEKYGKSGMKVNGHEVRAVRNTIQKTGVAEIQDLTISKKTENKNLRDESKTEGQRDGSGANATHISGLDKRNHRTKKAVLDASVQELATRATSRAVAEAAKNITPPKSAYEFEVSWRGFAGDHALQARLLKAISPNALPQIFKNALSASILIDIVKVVATFFTGEVDLAIKYLEYLTMVPRFDLVIMCLSLADKADLRKVWDETFCNESTPIEYAEILDNLRSKYCLSQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	428	2.2.26 [Sep-21-2011]
Q9D706	660	RNA polymerase II-associa	yes	no	0.698	0.453	0.307	6e-32
Q5ZKQ3	665	RNA polymerase II-associa	yes	no	0.712	0.458	0.286	7e-31
Q68FQ7	659	RNA polymerase II-associa	yes	no	0.738	0.479	0.311	1e-30
Q28IV3	657	RNA polymerase II-associa	yes	no	0.740	0.482	0.287	5e-30
Q9H6T3	665	RNA polymerase II-associa	no	no	0.754	0.485	0.298	7e-30
Q6NU95	660	RNA polymerase II-associa	N/A	no	0.719	0.466	0.283	2e-27
Q9LVH5	589	Outer envelope protein 64	no	no	0.228	0.166	0.525	2e-20
Q9MUK5	593	Translocon at the outer m	N/A	no	0.261	0.188	0.424	3e-19
Q80ZX8	901	Sperm-associated antigen	no	no	0.133	0.063	0.427	3e-18
Q07617	926	Sperm-associated antigen	no	no	0.317	0.146	0.395	2e-17

>sp|Q9D706|RPAP3_MOUSE RNA polymerase II-associated protein 3 OS=Mus musculus GN=Rpap3 PE=1 SV=1

 Score =  139 bits (349), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 111/361 (30%), Positives = 179/361 (49%), Gaps = 62/361 (17%)

Query: 74  ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTE 132
           A +EK+LGN  FK+ K+++AI+CY+R IA   T A+  ANRAMAYLK++R++EAE DCT+
Sbjct: 284 AIAEKDLGNGFFKEGKYEQAIECYTRGIAADRTNALLPANRAMAYLKIQRYEEAERDCTQ 343

Query: 133 ALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEV-KSLYEK- 190
           A+ LD  Y KA++RR TAR  LGK+ E+ +D E  L LEP N++   +L+ + K L EK 
Sbjct: 344 AIVLDGSYSKAFARRGTARTFLGKINEAKQDFETVLLLEPGNKQAATELSRIKKELIEKG 403

Query: 191 ---EVFQKASKTLEKYGKSGMKVNGHEVRAVRN-------TIQKTGVAEIQDLTISKKTE 240
              +VF  +++              H V+AV N        ++K  + E  +L      E
Sbjct: 404 HWDDVFLDSTQ------------RHHVVKAVDNPPRGSPKALKKVFIEETGNL-----IE 446

Query: 241 NKNLRDESKTEGQRD------GSGANATHISGL-----DKRNHRTKK--AVLDASV---- 283
             +  D S T  + D      G+G       G+     D+   +  K  AV D S     
Sbjct: 447 TVDAPDSSATVPESDRATAAVGTGTKKNPSEGVSLPAGDRPRAKVLKIEAVSDTSAPQAQ 506

Query: 284 ------------QELATRATSRAVAEAAKNITP-PKSAYEFEVSWRGFAGDHALQARLLK 330
                       ++ + RA       AA  + P P ++++ E  +R       +  + +K
Sbjct: 507 VGVKQDARQPGSEKASVRAEQMPGQLAAAGLPPVPANSFQLESDFRQLRSSPEMLYQYVK 566

Query: 331 AISPNALPQIFKNALSASILIDIVKVVATFFTGEVDLAIKY--LEYLTMVPRFDLVIMCL 388
            I P+  P++F+  L   +   I+K++  F+      A+ +  LE L+ + RFD+ +M +
Sbjct: 567 NIEPSLYPKLFQKNLDPDVFNQIIKILHDFYIEREKPALIFEVLERLSQLRRFDMAVMFM 626

Query: 389 S 389
           S
Sbjct: 627 S 627

Forms an interface between the RNA polymerase II enzyme and chaperone/scaffolding protein, suggesting that it is required to connect RNA polymerase II to regulators of protein complex formation.
Mus musculus (taxid: 10090)

>sp|Q5ZKQ3|RPAP3_CHICK RNA polymerase II-associated protein 3 OS=Gallus gallus GN=RPAP3 PE=2 SV=1

 Score =  135 bits (339), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 105/367 (28%), Positives = 182/367 (49%), Gaps = 62/367 (16%)

Query: 74  ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTE 132
           A +EK+LGN  FK+ K++ AI+CY+R IA   T A+  ANRAMAYLK+++++EAE+DCT+
Sbjct: 283 AVTEKDLGNGYFKEGKYEAAIECYTRGIAADGTNALLPANRAMAYLKIQKYEEAENDCTQ 342

Query: 133 ALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEV 192
           AL LD  Y KA++RR  AR  LGKLKE+++D E  L+LEP N++   +L ++++    E+
Sbjct: 343 ALLLDASYSKAFARRGAARVALGKLKEAMQDFEAVLKLEPGNKQAINELTKIRN----EL 398

Query: 193 FQKASKTLEKYGKSGMKVN--------GHEVRAVRNT--IQKTGVAEIQDLTIS------ 236
            +K     E+Y    +K +         H    +++T  +++  V E+ D  ++      
Sbjct: 399 AEKEQSCHEEYPAVLIKESEIKNIVKLTHNPLNLKSTKPLRRIAVEEVDDDVLNSDFSSS 458

Query: 237 -------------KKTEN---------------KNLRDESKTEGQRDGSGANATHISGLD 268
                        + TEN               K L+ E  T+       A A  +S   
Sbjct: 459 TSLVNNWKNSVNIETTENLDQDDQLTSMDIPKAKQLKIEEITDVSSPQLPAGAKGVS--- 515

Query: 269 KRNHRTKKAVLDASVQELATRATSRAVAEAAKNITPPKSAYEFEVSWRGFAGDHALQARL 328
                   +VL  S+ +   R    +   A+     P ++++ E  +R            
Sbjct: 516 --------SVLHPSMNKQIERENKASFRSASPVPAIPANSFQLESDFRKLKDCPEKMYLY 567

Query: 329 LKAISPNALPQIFKNALSASILIDIVKVVATFFT--GEVDLAIKYLEYLTMVPRFDLVIM 386
           LK I P+  P++F+ +L   +   I++++  F+    E  L ++ L+ L+ + RFD+ +M
Sbjct: 568 LKQIEPSIYPKLFQKSLDPDLFNQILRILHDFYIEKEEPSLILEILQRLSELKRFDMAVM 627

Query: 387 CLSLADK 393
            +S ++K
Sbjct: 628 FMSGSEK 634

May for an interface between the RNA polymerase II enzyme and chaperone/scaffolding protein.

Gallus gallus (taxid: 9031)

>sp|Q68FQ7|RPAP3_RAT RNA polymerase II-associated protein 3 OS=Rattus norvegicus GN=Rpap3 PE=2 SV=1

 Score =  134 bits (337), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 107/344 (31%), Positives = 178/344 (51%), Gaps = 28/344 (8%)

Query: 74  ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTE 132
           A +EK+LGN  FK+ K+++AI+CY+R IA   T A+  ANRAMAYLK+++++EAE DCT+
Sbjct: 282 AIAEKDLGNGFFKEGKYEQAIECYTRGIAADSTNALLPANRAMAYLKVQKYEEAERDCTQ 341

Query: 133 ALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEV-KSLYEK- 190
           A+ LD  Y KA++RR TAR  LGK+ E+ +D E  L LEP N++   +L+ + K L EK 
Sbjct: 342 AILLDGSYSKAFARRGTARTFLGKINEAKQDFETVLLLEPGNKQAVTELSRIKKELIEKG 401

Query: 191 ---EVFQKASKTLEKYGKSGMKVNGHEVRAVRNTIQKTG-VAEIQDLTISKKTENKNLRD 246
              +VF  +++             G      +  I++TG + E  D   S  T  ++ R 
Sbjct: 402 RWDDVFLDSTQRHNVVKPVDSPHRGSPKALKKVFIEETGNLIESVDAPESSATVPESDRA 461

Query: 247 ESKTEGQRDGSGANATHISGLDKRNHRTKK--AVLDAS-----------VQELATRATSR 293
               +  R    +    +S  +    +  K  AV D+S           V++  +  TS 
Sbjct: 462 AVAVDTGRKKDFSQGDSVSSGETPRAKVLKIEAVGDSSAPQAQVDVKQGVRQSVSEKTSV 521

Query: 294 AVAE-----AAKNITP-PKSAYEFEVSWRGFAGDHALQARLLKAISPNALPQIFKNALSA 347
            VA+     AA  + P P ++++ E  +R       +  + +K I P+  P++F+  L  
Sbjct: 522 RVAQTPGQLAAVVLPPVPANSFQLESDFRQLRSSPEMLYQYVKKIEPSLYPKLFQKNLDP 581

Query: 348 SILIDIVKVVATFFTGEVDLAIKY--LEYLTMVPRFDLVIMCLS 389
            +   I+K++  F+      A+ +  LE L+ + RFD+ +M +S
Sbjct: 582 DVFNQIIKILHDFYVEREKPALIFEVLERLSQLRRFDMAVMFMS 625

Forms an interface between the RNA polymerase II enzyme and chaperone/scaffolding protein, suggesting that it is required to connect RNA polymerase II to regulators of protein complex formation.

Rattus norvegicus (taxid: 10116)

>sp|Q28IV3|RPAP3_XENTR RNA polymerase II-associated protein 3 OS=Xenopus tropicalis GN=rpap3 PE=2 SV=1

 Score =  132 bits (332), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 100/348 (28%), Positives = 179/348 (51%), Gaps = 31/348 (8%)

Query: 74  ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTE 132
           A  +K+LGN  FK+ K++ AIDCYS+ +    T A+  ANRAMAYLK+++++EAE DCT 
Sbjct: 284 AIMQKDLGNAYFKEGKYEIAIDCYSQGMEADTTNALLPANRAMAYLKIQKYKEAETDCTL 343

Query: 133 ALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQ----EIKKQLAEVKS-- 186
           A++LD  Y KA++RR TAR  LGK KE+ ED E  L+L+P N+    E++K   E++S  
Sbjct: 344 AISLDASYCKAFARRGTARIMLGKQKEAKEDFEMVLKLDPGNKQAVLELEKISRELRSNE 403

Query: 187 -------------LYEKEVFQKASKTLEKYGKSGMKVNGHEVRAVRNTIQKTGVAEIQDL 233
                          EK   Q+++K L +     ++  G  V +  +++ ++   +   +
Sbjct: 404 KDTKGNKERKLINAVEKLPHQRSTKPLRRM---VIEEVGGPVESCISSLNESNHGKADSM 460

Query: 234 TISKKTENKNLRDESKTEGQRDGSGANATHISGL-DKRNHRTKKAVLDASVQELATRATS 292
            +  K + ++L +E       D   A    I  + D        +  + SV + +     
Sbjct: 461 DLITKADKQDLNEEQNFCSLPDVPSAKVPKIEEISDTYGSCEPSSGEEHSVSQPSPPKIE 520

Query: 293 RAVAEAAKNI-----TPPKSAYEFEVSWRGFAGDHALQARLLKAISPNALPQIFKNALSA 347
           + V   ++++       P ++++ E  +R   G+  L  R LK I P+   ++F+ AL  
Sbjct: 521 KVVTTFSESLNIGIPVVPTNSFQLESDFRRLKGNPDLLYRYLKQIEPSFYGKLFQKALDP 580

Query: 348 SILIDIVKVVATFFTGE--VDLAIKYLEYLTMVPRFDLVIMCLSLADK 393
            +  +I+ ++   +  +   DL  + L+ L+ + RFD+ +M LS +D+
Sbjct: 581 DLFSEILTILREQYINKDSCDLIFEILQRLSELKRFDMAVMFLSGSDR 628

May for an interface between the RNA polymerase II enzyme and chaperone/scaffolding protein.

Xenopus tropicalis (taxid: 8364)

>sp|Q9H6T3|RPAP3_HUMAN RNA polymerase II-associated protein 3 OS=Homo sapiens GN=RPAP3 PE=1 SV=2

 Score =  132 bits (331), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 110/368 (29%), Positives = 184/368 (50%), Gaps = 45/368 (12%)

Query: 74  ATSEKELGNECFKQKKFKEAIDCYSRSIAL-SPTAVAYANRAMAYLKLRRFQEAEDDCTE 132
           A SEK+ GN  FK+ K++ AI+CY+R IA     A+  ANRAMAYLK+++++EAE DCT+
Sbjct: 282 AISEKDRGNGFFKEGKYERAIECYTRGIAADGANALLPANRAMAYLKIQKYEEAEKDCTQ 341

Query: 133 ALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEV-KSLYEK- 190
           A+ LD  Y KA++RR TAR  LGKL E+ +D E  L LEP N++   +L+++ K L EK 
Sbjct: 342 AILLDGSYSKAFARRGTARTFLGKLNEAKQDFETVLLLEPGNKQAVTELSKIKKELIEKG 401

Query: 191 ---EVF------QKASKTLEKYGKSGMKVNGHEVRAVRNTIQKTG----VAEIQDLTISK 237
              +VF      Q   K ++     G      +V      I++TG      ++ D T + 
Sbjct: 402 HWDDVFLDSTQRQNVVKPIDNPPHPGSTKPLKKV-----IIEETGNLIQTIDVPDSTTAA 456

Query: 238 KTENK-----NLRDESKTEGQRDGSGANATHISGLDKRNHRTKKAVLD-------ASVQE 285
             EN      N+   + T  +++ S  +    S   +      + V D       AS+++
Sbjct: 457 APENNPINLANVIAATGTTSKKNSSQDDLFPTSDTPRAKVLKIEEVSDTSSLQPQASLKQ 516

Query: 286 LATRATSRAV--------AEAAKNITPPKSA--YEFEVSWRGFAGDHALQARLLKAISPN 335
              ++ S  +        A+ A  + PP  A  ++ E  +R       +  + LK I P+
Sbjct: 517 DVCQSYSEKMPIEIEQKPAQFATTVLPPIPANSFQLESDFRQLKSSPDMLYQYLKQIEPS 576

Query: 336 ALPQIFKNALSASILIDIVKVVATFFTGEVD--LAIKYLEYLTMVPRFDLVIMCLSLADK 393
             P++F+  L   +   IVK++  F+  +    L  + L+ L+ + RFD+ +M +S  +K
Sbjct: 577 LYPKLFQKNLDPDVFNQIVKILHDFYIEKEKPLLIFEILQRLSELKRFDMAVMFMSETEK 636

Query: 394 ADLRKVWD 401
              R +++
Sbjct: 637 KIARALFN 644

Forms an interface between the RNA polymerase II enzyme and chaperone/scaffolding protein, suggesting that it is required to connect RNA polymerase II to regulators of protein complex formation.

Homo sapiens (taxid: 9606)

>sp|Q6NU95|RPAP3_XENLA RNA polymerase II-associated protein 3 OS=Xenopus laevis GN=rpap3 PE=2 SV=1

 Score =  124 bits (310), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 102/360 (28%), Positives = 177/360 (49%), Gaps = 52/360 (14%)

Query: 74  ATSEKELGNECFKQKKFKEAIDCYSRSI-ALSPTAVAYANRAMAYLKLRRFQEAEDDCTE 132
           A  +K+LGN  FK+ K++ AI+CYS+ + A +  A+  ANRAMAYLK+++++EAE DCT 
Sbjct: 284 AIMQKDLGNAYFKEGKYEIAIECYSQGMEADNTNALLPANRAMAYLKIQKYKEAEADCTL 343

Query: 133 ALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEV 192
           A++LD  Y KA++RR TA   LGK KE+ ED E  L+L+P N++   +LA++        
Sbjct: 344 AISLDASYCKAFARRGTASIMLGKQKEAKEDFEMVLKLDPGNKQAVLELAKI-------- 395

Query: 193 FQKASKTLEKYGKSGMKVNGHEVRAVRNTIQKT------------------GVAEIQDLT 234
             +  +++EK  ++G K +    R + NT++K                   G AEI + +
Sbjct: 396 -SQELRSIEK-DRNGNKDSNQ--RKLINTVEKLPHLRSTKPLRRMVIEEVGGPAEIFNTS 451

Query: 235 ISKKTENK----------NLRDESKTEGQRDGSGANATHISGLDKRNHRTKKAVLDASVQ 284
           + +    K          N +D ++ +   +     +  I  +++ +             
Sbjct: 452 LKETNHRKADSVDLTAETNTQDLNQEQNICNSPDVPSPKIPKIEEISDTPGSCEPTTGED 511

Query: 285 ELATRATSRAVAEAAK------NITPP---KSAYEFEVSWRGFAGDHALQARLLKAISPN 335
            L +R +   + +         NI  P    ++++ E  +R   G+  L    LK I P 
Sbjct: 512 YLTSRPSPPKIEKVVSTFSESLNIGIPAVPTNSFQLESDFRRLKGNPDLLYVYLKQIEPT 571

Query: 336 ALPQIFKNALSASILIDIVKVVATFFTGE--VDLAIKYLEYLTMVPRFDLVIMCLSLADK 393
              ++FK AL   +  DI+ ++   F  +   DL  + L+ L+ + RFD+ +M LS +DK
Sbjct: 572 LYGKLFKKALDPDLFSDILTILREQFINKDSPDLIFEILQRLSELKRFDMAVMFLSESDK 631

May for an interface between the RNA polymerase II enzyme and chaperone/scaffolding protein.

Xenopus laevis (taxid: 8355)

>sp|Q9LVH5|OE64C_ARATH Outer envelope protein 64, chloroplastic OS=Arabidopsis thaliana GN=OEP64 PE=1 SV=1

 Score =  100 bits (249), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 52/99 (52%), Positives = 70/99 (70%), Gaps = 1/99 (1%)

Query: 78  KELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNL 136
           KE GN+ FK+K +++AI  YS +I LS   A  Y+NRA AYL+L  F +AE+DCT+A+ L
Sbjct: 478 KEKGNQAFKEKLWQKAIGLYSEAIKLSDNNATYYSNRAAAYLELGGFLQAEEDCTKAITL 537

Query: 137 DDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQ 175
           D + +KAY RR TAR+ LG  K +IED  +AL LEP N+
Sbjct: 538 DKKNVKAYLRRGTAREMLGDCKGAIEDFRYALVLEPNNK 576

Chaperone receptor mediating Hsp90-dependent protein targeting to chloroplasts. Bi-functional preprotein receptor acting on both sides of the membrane. Not essential for an efficient import of pre-proteins into plastids.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9MUK5|TOC64_PEA Translocon at the outer membrane of chloroplasts 64 OS=Pisum sativum GN=TOC64 PE=1 SV=1

 Score = 96.7 bits (239), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 48/113 (42%), Positives = 75/113 (66%), Gaps = 1/113 (0%)

Query: 78  KELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNL 136
           KE GN+ +K K++++AI  Y+ +I L    A  Y+NRA AYL+L  + +AE+DCT A++ 
Sbjct: 481 KEKGNQAYKDKQWQKAIGFYTEAIKLCGNNATYYSNRAQAYLELGSYLQAEEDCTTAISF 540

Query: 137 DDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYE 189
           D + +KAY RR TAR+ LG  KE+I+D ++AL LEP N+        ++ L++
Sbjct: 541 DKKNVKAYFRRGTAREMLGYYKEAIDDFKYALVLEPTNKRAASSAERLRKLFQ 593

Chaperone receptor mediating Hsp90-dependent protein targeting to chloroplasts. Bi-functional preprotein receptor acting on both sides of the membrane.

Pisum sativum (taxid: 3888)

>sp|Q80ZX8|SPAG1_MOUSE Sperm-associated antigen 1 OS=Mus musculus GN=Spag1 PE=1 SV=1

 Score = 93.6 bits (231), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 53/124 (42%), Positives = 78/124 (62%)

Query: 62  SSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLR 121
           ++ L  +E +  A  EK  GNE F    ++EA+  Y+RS++  PTA+AY NRA A +KL+
Sbjct: 201 TAGLTEKEKSFLANREKGKGNEAFYSGDYEEAVMYYTRSLSALPTAIAYNNRAQAEIKLQ 260

Query: 122 RFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQL 181
           R+  A +DC +AL LD   +KA  RRAT  K   KL+E+++D    L++EP N   KK L
Sbjct: 261 RWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDNDLAKKTL 320

Query: 182 AEVK 185
           +EV+
Sbjct: 321 SEVE 324

Plays a role in fertilization. Binds GTP and has GTPase activity.

Mus musculus (taxid: 10090)

>sp|Q07617|SPAG1_HUMAN Sperm-associated antigen 1 OS=Homo sapiens GN=SPAG1 PE=1 SV=3

 Score = 90.5 bits (223), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/149 (39%), Positives = 82/149 (55%), Gaps = 13/149 (8%)

Query: 74  ATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEA 133
           AT EKE GNE F    ++EA+  Y+RSI+  PT VAY NRA A +KL+ +  A  DC + 
Sbjct: 209 ATREKEKGNEAFNSGDYEEAVMYYTRSISALPTVVAYNNRAQAEIKLQNWNSAFQDCEKV 268

Query: 134 LNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEV--------- 184
           L L+   +KA  RRAT  K   KL+E+ ED    L +EP N   KK L+EV         
Sbjct: 269 LELEPGNVKALLRRATTYKHQNKLREATEDLSKVLDVEPDNDLAKKTLSEVERDLKNSEA 328

Query: 185 ----KSLYEKEVFQKASKTLEKYGKSGMK 209
               ++  ++ V Q+   + ++ GKSG K
Sbjct: 329 ASETQTKGKRMVIQEIENSEDEEGKSGRK 357

Plays a role in fertilization. Binds GTP and has GTPase activity.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	428
359487668	474	PREDICTED: RNA polymerase II-associated	0.988	0.892	0.601	1e-147
296089779	1097	unnamed protein product [Vitis vinifera]	0.988	0.385	0.601	1e-147
356575341	455	PREDICTED: RNA polymerase II-associated	0.974	0.916	0.566	1e-135
363808038	454	uncharacterized protein LOC100784528 [Gl	0.964	0.909	0.564	1e-134
356517104	474	PREDICTED: LOW QUALITY PROTEIN: RNA poly	0.885	0.799	0.592	1e-134
224122920	471	predicted protein [Populus trichocarpa]	0.985	0.895	0.566	1e-129
224123972	434	predicted protein [Populus trichocarpa]	0.899	0.887	0.576	1e-129
449454004	458	PREDICTED: RNA polymerase II-associated	0.964	0.901	0.539	1e-123
297853532	472	hypothetical protein ARALYDRAFT_474807 [	0.967	0.877	0.5	1e-118
42562786	476	tetratricopeptide repeat domain-containi	0.981	0.882	0.483	1e-115

>gi|359487668|ref|XP_002277910.2| PREDICTED: RNA polymerase II-associated protein 3-like [Vitis vinifera]

 Score =  527 bits (1357), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 284/472 (60%), Positives = 333/472 (70%), Gaps = 49/472 (10%)

Query: 2   AKHNRDQALD----------WDLSLNEKDKKMKHKASSKD-----NLVSSSLKSAKKPSP 46
           +KH RDQALD          W+LSL EKDKKMK +A  KD       V  S K +  P  
Sbjct: 7   SKHARDQALDFQGFLTDLQDWELSLKEKDKKMKAQAEEKDVPTARGNVKHSSKLSSSPGV 66

Query: 47  S---GNS--------YSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAID 95
           S   G S        YSRN+D +S ISSS M EES PDA SEKELGNE FKQ+KFKEAID
Sbjct: 67  SLRLGQSRSDTRQHEYSRNHDAISRISSSFMTEESLPDAASEKELGNEYFKQRKFKEAID 126

Query: 96  CYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG 155
           CYSRSIAL PTAVAYANRAMAY+K++RF+EAEDDC EALNLDDRYIKAYSRRATARKELG
Sbjct: 127 CYSRSIALLPTAVAYANRAMAYIKIKRFREAEDDCMEALNLDDRYIKAYSRRATARKELG 186

Query: 156 KLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKAS-------KTLEKYGKSGM 208
           K KE+ ED+EFALRLEPQNQEIKKQ AE KSLYEKE+ QKAS       + L+K GKS +
Sbjct: 187 KFKEATEDAEFALRLEPQNQEIKKQYAEAKSLYEKEILQKASGALKSSVQGLQKVGKSVV 246

Query: 209 KVNG--HEVRAVRNTIQKTGVAEIQDL--------TISKKTENKNLRDESKTEGQRDGSG 258
           +VN     VR++ ++ Q  G A IQD         T  ++TENK   + SK  G  +   
Sbjct: 247 EVNADTQGVRSISSSSQGAGEAAIQDRFMVPANTSTSMEETENKGTGNRSKENGYLE--- 303

Query: 259 ANATHISGLDK--RNHRTKKAVLDASVQELATRATSRAVAEAAKNITPPKSAYEFEVSWR 316
            NA   SGL+    NH+T +  + +S+QELA+RA SRA+ EAAKNIT P SAY+FEVSWR
Sbjct: 304 -NAVQNSGLEDVMSNHKTGQREMKSSLQELASRAASRAMVEAAKNITAPNSAYQFEVSWR 362

Query: 317 GFAGDHALQARLLKAISPNALPQIFKNALSASILIDIVKVVATFFTGEVDLAIKYLEYLT 376
           G  GDHALQA  LKAISPNALPQIFKNALSA ILIDI+K +ATFF  E+DLA+K+L+ LT
Sbjct: 363 GLLGDHALQASYLKAISPNALPQIFKNALSAPILIDIIKCIATFFVTEMDLAVKFLDNLT 422

Query: 377 MVPRFDLVIMCLSLADKADLRKVWDETFCNESTPIEYAEILDNLRSKYCLSQ 428
            + RFD++IMCLS  DK DL K+WDE FCN++TP  YA+ L  LR +YC  Q
Sbjct: 423 KISRFDMIIMCLSSTDKTDLLKIWDEVFCNKATPSGYADTLGKLRPRYCFKQ 474

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089779|emb|CBI39598.3| unnamed protein product [Vitis vinifera]

 Score =  526 bits (1356), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 284/472 (60%), Positives = 333/472 (70%), Gaps = 49/472 (10%)

Query: 2    AKHNRDQALD----------WDLSLNEKDKKMKHKASSKD-----NLVSSSLKSAKKPSP 46
            +KH RDQALD          W+LSL EKDKKMK +A  KD       V  S K +  P  
Sbjct: 630  SKHARDQALDFQGFLTDLQDWELSLKEKDKKMKAQAEEKDVPTARGNVKHSSKLSSSPGV 689

Query: 47   S---GNS--------YSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAID 95
            S   G S        YSRN+D +S ISSS M EES PDA SEKELGNE FKQ+KFKEAID
Sbjct: 690  SLRLGQSRSDTRQHEYSRNHDAISRISSSFMTEESLPDAASEKELGNEYFKQRKFKEAID 749

Query: 96   CYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG 155
            CYSRSIAL PTAVAYANRAMAY+K++RF+EAEDDC EALNLDDRYIKAYSRRATARKELG
Sbjct: 750  CYSRSIALLPTAVAYANRAMAYIKIKRFREAEDDCMEALNLDDRYIKAYSRRATARKELG 809

Query: 156  KLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKAS-------KTLEKYGKSGM 208
            K KE+ ED+EFALRLEPQNQEIKKQ AE KSLYEKE+ QKAS       + L+K GKS +
Sbjct: 810  KFKEATEDAEFALRLEPQNQEIKKQYAEAKSLYEKEILQKASGALKSSVQGLQKVGKSVV 869

Query: 209  KVNG--HEVRAVRNTIQKTGVAEIQDL--------TISKKTENKNLRDESKTEGQRDGSG 258
            +VN     VR++ ++ Q  G A IQD         T  ++TENK   + SK  G  +   
Sbjct: 870  EVNADTQGVRSISSSSQGAGEAAIQDRFMVPANTSTSMEETENKGTGNRSKENGYLE--- 926

Query: 259  ANATHISGLDK--RNHRTKKAVLDASVQELATRATSRAVAEAAKNITPPKSAYEFEVSWR 316
             NA   SGL+    NH+T +  + +S+QELA+RA SRA+ EAAKNIT P SAY+FEVSWR
Sbjct: 927  -NAVQNSGLEDVMSNHKTGQREMKSSLQELASRAASRAMVEAAKNITAPNSAYQFEVSWR 985

Query: 317  GFAGDHALQARLLKAISPNALPQIFKNALSASILIDIVKVVATFFTGEVDLAIKYLEYLT 376
            G  GDHALQA  LKAISPNALPQIFKNALSA ILIDI+K +ATFF  E+DLA+K+L+ LT
Sbjct: 986  GLLGDHALQASYLKAISPNALPQIFKNALSAPILIDIIKCIATFFVTEMDLAVKFLDNLT 1045

Query: 377  MVPRFDLVIMCLSLADKADLRKVWDETFCNESTPIEYAEILDNLRSKYCLSQ 428
             + RFD++IMCLS  DK DL K+WDE FCN++TP  YA+ L  LR +YC  Q
Sbjct: 1046 KISRFDMIIMCLSSTDKTDLLKIWDEVFCNKATPSGYADTLGKLRPRYCFKQ 1097

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575341|ref|XP_003555800.1| PREDICTED: RNA polymerase II-associated protein 3-like [Glycine max]

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 252/445 (56%), Positives = 323/445 (72%), Gaps = 28/445 (6%)

Query: 11  DWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGNSYSRN----YD--PVSHISSS 64
           DW+ S  +K +  K  ASS     S  ++ A K        +RN    YD   ++H+ SS
Sbjct: 12  DWEFSRKDKARPQKENASSSRITGSVGVEKASKGDTISFDNARNSPGQYDLSRINHLHSS 71

Query: 65  LMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQ 124
            + E+  PDA SEK+LGNE FKQKKFKEA DCYSRSIALSPTAVAYANRAMA +KLRRFQ
Sbjct: 72  FVPED-VPDAASEKDLGNEFFKQKKFKEARDCYSRSIALSPTAVAYANRAMANIKLRRFQ 130

Query: 125 EAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEV 184
           EAEDDCTEALNLDDRYIKAYSRRATARKELGK+KES++D+EFALRLEP NQEIKKQ A+ 
Sbjct: 131 EAEDDCTEALNLDDRYIKAYSRRATARKELGKIKESMDDAEFALRLEPNNQEIKKQYADA 190

Query: 185 KSLYEKEVFQKASKTL-------EKYGKSGMKVNGHEVRAVRNTIQKTGVAEI------- 230
           KS YEK++ QKAS  L       +K GKS  KVNG  +  +  + QK+G+AE+       
Sbjct: 191 KSFYEKDILQKASGVLRSTVQGTQKVGKSEEKVNGDSIHPISRSTQKSGLAEVHHHKKDN 250

Query: 231 ------QDLTISKKTENKNLRDESKTEGQRD-GSGANATHISGLDKRNHRTKKAVLDASV 283
                 ++  +++  + + ++  S  + Q D GS    +  + L++RNHR  K  + ASV
Sbjct: 251 KRQILVKESLLTEDVDGREIKARSWPQSQGDDGSKGGLSASNSLEQRNHRITKPEMKASV 310

Query: 284 QELATRATSRAVAEAAKNITPPKSAYEFEVSWRGFAGDHALQARLLKAISPNALPQIFKN 343
           Q+LA+RA SRA++EAAKN+TPP +AY+FEVSWR F+GD ALQARLLKAISP+ LP+IFKN
Sbjct: 311 QQLASRAASRAMSEAAKNVTPPTTAYQFEVSWRAFSGDLALQARLLKAISPHELPKIFKN 370

Query: 344 ALSASILIDIVKVVATFFTGEVDLAIKYLEYLTMVPRFDLVIMCLSLADKADLRKVWDET 403
           ALS++ILI+I+K +A+ FT ++DL + YLE+LT VPRFD+++MCLS  +K D+RK+WDE 
Sbjct: 371 ALSSTILIEIIKCLASLFTEDMDLVVSYLEHLTKVPRFDVIVMCLSSTNKDDIRKIWDEV 430

Query: 404 FCNESTPIEYAEILDNLRSKYCLSQ 428
           F  E+TPIEYAEILDNL+SK+ L Q
Sbjct: 431 FSGEATPIEYAEILDNLQSKFGLGQ 455

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363808038|ref|NP_001242466.1| uncharacterized protein LOC100784528 [Glycine max] gi|255641877|gb|ACU21207.1| unknown [Glycine max]

 Score =  486 bits (1250), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 253/448 (56%), Positives = 324/448 (72%), Gaps = 35/448 (7%)

Query: 11  DWDLSLNEKDKKMKH---------KASSKDNLVSSSLKSAKKPSPSGNSYSRNYDPVSHI 61
           DW+LS  +K +  K          KAS  D +   S   A+  SP     SR  DP + +
Sbjct: 12  DWELSRKDKTRAQKENLTGSVGVEKASKGDTI---SFDRARN-SPGQYDLSRINDPFNRV 67

Query: 62  SSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLR 121
            SS + E+  PDA SEK+LGNE FKQKKFKEA DCYSRSIALSPTAVAYANRAMA +KLR
Sbjct: 68  HSSFVPED-VPDAVSEKDLGNEFFKQKKFKEARDCYSRSIALSPTAVAYANRAMANIKLR 126

Query: 122 RFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQL 181
           RFQEAEDDCTEALNLDDRYIKAYSR ATARKELGK+KES++D+ FALRLEP NQEIKKQ 
Sbjct: 127 RFQEAEDDCTEALNLDDRYIKAYSRGATARKELGKIKESMDDAAFALRLEPNNQEIKKQY 186

Query: 182 AEVKSLYEKEVFQKASKTL-------EKYGKSGMKVNGHEVRAVRNTIQKTGVAEI---- 230
           A+ KSLYEK++ QKAS  L       +K  KS  K+NG  ++ + ++ QK+G+AE+    
Sbjct: 187 ADAKSLYEKDILQKASGALRSTVQGTQKSQKSEEKINGDSIQPISHSTQKSGLAEVNHHK 246

Query: 231 ---------QDLTISKKTENKNLRDESKTEGQR-DGSGANATHISGLDKRNHRTKKAVLD 280
                    ++  +++  +++  +  S+ + Q  DGS    +  + L++RNH   K  + 
Sbjct: 247 KDNEQQILVKESLLTEDVDSRETKARSRPQSQGGDGSKEGLSASNSLEQRNHSITKLEMK 306

Query: 281 ASVQELATRATSRAVAEAAKNITPPKSAYEFEVSWRGFAGDHALQARLLKAISPNALPQI 340
           ASVQ+LA+RA SR VAEAAKN+TPP +AY+FEVSWR F+GD ALQARLLKAISP+ LP+I
Sbjct: 307 ASVQQLASRAASRVVAEAAKNVTPPTTAYQFEVSWRAFSGDLALQARLLKAISPHELPKI 366

Query: 341 FKNALSASILIDIVKVVATFFTGEVDLAIKYLEYLTMVPRFDLVIMCLSLADKADLRKVW 400
           FKNALS++ILI+I+K +A+FFT ++DL + YLE+LT VPRFD+++MCLS  +K D+RK+W
Sbjct: 367 FKNALSSAILIEIIKCLASFFTEDMDLVVSYLEHLTKVPRFDVIVMCLSSTNKDDIRKIW 426

Query: 401 DETFCNESTPIEYAEILDNLRSKYCLSQ 428
           DE F +E+TPIEYAEILDNLRSK+ L Q
Sbjct: 427 DEVFSSEATPIEYAEILDNLRSKFGLGQ 454

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517104|ref|XP_003527230.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymerase II-associated protein 3-like [Glycine max]

 Score =  483 bits (1243), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 240/405 (59%), Positives = 309/405 (76%), Gaps = 26/405 (6%)

Query: 45  SPSGNSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALS 104
           SP     SR    ++H+ SS + E+  PDA SEK+LGNE FKQKKFKEA DCYSRSIALS
Sbjct: 75  SPGQYDLSR----INHLHSSFVPED-VPDAASEKDLGNEFFKQKKFKEARDCYSRSIALS 129

Query: 105 PTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDS 164
           PTAVAYANRAMA +KLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGK+KES++D+
Sbjct: 130 PTAVAYANRAMANIKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKIKESMDDA 189

Query: 165 EFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKTL-------EKYGKSGMKVNGHEVRA 217
           EFALRLEP NQEIKKQ A+ KS YEK++ QKAS  L       +K GKS  KVNG  +  
Sbjct: 190 EFALRLEPNNQEIKKQYADAKSFYEKDILQKASGVLRSTVQGTQKVGKSEEKVNGDSIHP 249

Query: 218 VRNTIQKTGVAEI-------------QDLTISKKTENKNLRDESKTEGQRD-GSGANATH 263
           + ++ QK+G+AE+             ++  +++  +++ ++  S+ + Q D GS    + 
Sbjct: 250 ISHSTQKSGLAEVHHHKKDNERKILVKESLLTEDVDSREIKARSRPQSQGDDGSKGGLSA 309

Query: 264 ISGLDKRNHRTKKAVLDASVQELATRATSRAVAEAAKNITPPKSAYEFEVSWRGFAGDHA 323
            + L++RNHR  K  + ASV++LA+RA SRA++EAAKN+TPP +AY+FEVSWR F+GD A
Sbjct: 310 SNSLEQRNHRITKPEMKASVEQLASRAASRAMSEAAKNVTPPTTAYQFEVSWRAFSGDLA 369

Query: 324 LQARLLKAISPNALPQIFKNALSASILIDIVKVVATFFTGEVDLAIKYLEYLTMVPRFDL 383
           LQARLLKAISP+ LP+IFKNALS++ILI+I+K +A+ FT ++DL + YLE+LT VPRFD+
Sbjct: 370 LQARLLKAISPHXLPKIFKNALSSTILIEIIKCLASLFTEDMDLVVSYLEHLTKVPRFDV 429

Query: 384 VIMCLSLADKADLRKVWDETFCNESTPIEYAEILDNLRSKYCLSQ 428
           ++MCLS  +K D+RK+WDE F  E+TPIEYAEILDNL+SK+ L Q
Sbjct: 430 IVMCLSSTNKDDIRKIWDEVFSGEATPIEYAEILDNLQSKFGLGQ 474

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122920|ref|XP_002318949.1| predicted protein [Populus trichocarpa] gi|222857325|gb|EEE94872.1| predicted protein [Populus trichocarpa]

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 264/466 (56%), Positives = 324/466 (69%), Gaps = 44/466 (9%)

Query: 2   AKHNRDQALDWDLSLNE-KDKKMKHKASSKDNLVSSSLKSAKKPSPSGNSY--SRNYDPV 58
            KH RDQALD+   LN+ +D ++      K    S+   SA   S S   Y  +RN+D +
Sbjct: 6   GKHGRDQALDFQGFLNDLQDWELLKDTDKKMKKKSTGKTSAVDFSSSSGMYDHARNFDAI 65

Query: 59  SHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYL 118
           + +S+S   +EST DAT+EKELGNE FKQKK+KEAI+CYSRSIALSPTAVAYANRAMAYL
Sbjct: 66  NRLSNSFAIDESTVDATTEKELGNEYFKQKKYKEAIECYSRSIALSPTAVAYANRAMAYL 125

Query: 119 KLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK 178
           K++R  +AEDDCTEALNLDDRYIKAYSRRAT RKELGKLKESIEDSEFAL+LEP NQEIK
Sbjct: 126 KIKR--QAEDDCTEALNLDDRYIKAYSRRATTRKELGKLKESIEDSEFALKLEPNNQEIK 183

Query: 179 KQLAEVKSLYEKE------------------VFQKASKTL-------EKYGKSGMKVNGH 213
           KQ AEVKSLYEK                      KAS++L       +K G+S   VNGH
Sbjct: 184 KQYAEVKSLYEKASDSTICCYSGCYISLLQFFVTKASESLRSSLQGAQKGGRSEASVNGH 243

Query: 214 EVRAVRNTIQKTGVAEIQ---------DLTISKKTENKNLRDESKTEGQR-DGSGANATH 263
            V  V N  Q+TG +  Q         D  + K    + ++++S   G R DG   N + 
Sbjct: 244 AVHPVSNVTQRTGASASQKDKAKENDGDGVVKKSVYVEEIKNKSTGAGSRSDGQLGNDSR 303

Query: 264 ISGLDKRN----HRTKKAVLDASVQELATRATSRAVAEAAKNITPPKSAYEFEVSWRGFA 319
            + +   N      T +  L ASV+ELA++A SRA+AEAAKNITPP SAY+FEVSWRGF+
Sbjct: 304 ANAIPSSNAESIQVTGRQELKASVKELASQAASRAMAEAAKNITPPNSAYQFEVSWRGFS 363

Query: 320 GDHALQARLLKAISPNALPQIFKNALSASILIDIVKVVATFFTGEVDLAIKYLEYLTMVP 379
           GD ALQA LLK ++P+ALPQIFKNALS +ILIDI+K V++FF  ++DLA+KYLE LT VP
Sbjct: 364 GDRALQAHLLKVVTPSALPQIFKNALSVTILIDIIKCVSSFFIDDMDLAVKYLENLTEVP 423

Query: 380 RFDLVIMCLSLADKADLRKVWDETFCNESTPIEYAEILDNLRSKYC 425
           RFD++IMCL   DKADL K+WDE FC+E+TPI+YAEILD +RS+YC
Sbjct: 424 RFDILIMCLPSTDKADLLKMWDEVFCSEATPIKYAEILDKMRSRYC 469

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123972|ref|XP_002330255.1| predicted protein [Populus trichocarpa] gi|222871711|gb|EEF08842.1| predicted protein [Populus trichocarpa]

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 268/465 (57%), Positives = 311/465 (66%), Gaps = 80/465 (17%)

Query: 2   AKHNRDQALDWDLSLNE--------------------KDKKMKHKASSKDNLVSSSLKSA 41
            KH RDQALD+   LN+                     D K+     SK         SA
Sbjct: 6   GKHGRDQALDFQGFLNDLQDWELLKDTDKKMKKKSRASDVKIGEDGRSKGK------TSA 59

Query: 42  KKPSPSGNS---YSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYS 98
              S SG+    YSRN+  ++ +SSS   +E T DAT+EKELGNE FKQKKF EAI+CYS
Sbjct: 60  ADSSRSGSGQYEYSRNFGAINRLSSSFTTDEITVDATTEKELGNEYFKQKKFNEAIECYS 119

Query: 99  RSIALSPTAVAYANRAMAYLKLRR----FQEAEDDCTEALNLDDRYIKAYSRRATARKEL 154
           RSIALSPTAVAYANRAMAYLK++R    F+EAEDDCTEALNLDDRYIKAYSRRATARKEL
Sbjct: 120 RSIALSPTAVAYANRAMAYLKIKRQFFLFREAEDDCTEALNLDDRYIKAYSRRATARKEL 179

Query: 155 GKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEK-------EVFQKASKTL------- 200
           GKLKESIEDSEFAL+LEP NQEIKKQ AEVKSLYEK       E+ QKAS TL       
Sbjct: 180 GKLKESIEDSEFALKLEPNNQEIKKQYAEVKSLYEKASDYLMLEILQKASGTLRSSLQGT 239

Query: 201 EKYGKSGMKVNGHEVRAVRNTIQKTGVAEIQDLTISKKTENKNLRDESKTEGQRDGSGAN 260
           ++ G+S   VNGH V  V    QKTGV+       + K +N                   
Sbjct: 240 QQGGRSEASVNGHAVHPVSIATQKTGVS-------ASKKDNT------------------ 274

Query: 261 ATHISGLDKRNHRTKKAVLDASVQELATRATSRAVAEAAKNITPPKSAYEFEVSWRGFAG 320
                   K+N+RT++  L  SV ELA++A SRA+AEAAKNITPP SAY+FEVSW+GF+G
Sbjct: 275 --------KKNNRTRRQELKTSVIELASQAASRAMAEAAKNITPPNSAYQFEVSWQGFSG 326

Query: 321 DHALQARLLKAISPNALPQIFKNALSASILIDIVKVVATFFTGEVDLAIKYLEYLTMVPR 380
           D ALQA LLK  SP+ALPQIFKNALS  ILIDI+K VA+FF  ++D A+KYLE LT VPR
Sbjct: 327 DRALQAHLLKVTSPSALPQIFKNALSVPILIDIIKCVASFFIDDMDFAVKYLENLTKVPR 386

Query: 381 FDLVIMCLSLADKADLRKVWDETFCNESTPIEYAEILDNLRSKYC 425
           FD++IMCLS  D +DL K+WD  FC+ STPIEYAEILDNLRSKYC
Sbjct: 387 FDMLIMCLSSTDTSDLLKMWDGVFCSASTPIEYAEILDNLRSKYC 431

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454004|ref|XP_004144746.1| PREDICTED: RNA polymerase II-associated protein 3-like [Cucumis sativus] gi|449517788|ref|XP_004165926.1| PREDICTED: RNA polymerase II-associated protein 3-like [Cucumis sativus]

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 252/467 (53%), Positives = 310/467 (66%), Gaps = 54/467 (11%)

Query: 2   AKHNRDQALD----------WDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGNSY 51
           AKH RDQ LD          W++S   KDKK+K +A  K+       + A     S   Y
Sbjct: 6   AKHGRDQLLDFQGFLNDLQDWEVSFKGKDKKLKPQAIGKEKEDRRQTEKA-----SAADY 60

Query: 52  SRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYA 111
            + YD V+ +S +   E S  DA SEKE GNE FKQKKFKEAIDCYSRSIALSPTAVA+A
Sbjct: 61  MKQYDAVNRLSRNFQTEGSFVDAASEKEQGNEYFKQKKFKEAIDCYSRSIALSPTAVAFA 120

Query: 112 NRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLE 171
           NRAMAYLK+RRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGK KE++ED+EFA RLE
Sbjct: 121 NRAMAYLKIRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKAKEALEDAEFAQRLE 180

Query: 172 PQNQEIKKQLAEVKSLYEKEVFQKAS----------KTLEKYGKSGMKVNGHEVRAVRNT 221
           P NQEIKKQ A++++   K + +KAS          KTL+K   S  K+   ++  V ++
Sbjct: 181 PNNQEIKKQHADLRAFVGKAILEKASGASRSSTKNKKTLKK-SDSDAKI--QDIPPVSSS 237

Query: 222 IQKTGVAEIQDLTISKKTENKNLRDESKT-----EGQRDGSGANAT-------------- 262
             +TG+     L   ++ E     +  KT     E +   SGA  T              
Sbjct: 238 TSRTGL-----LAARERVEENGGGNAVKTSARLEESEDTSSGAEITSKKVATNGFHKDSS 292

Query: 263 -HISGLDKRNHRTKKAVLDASVQELATRATSRAVAEAAKNITPPKSAYEFEVSWRGFAGD 321
            ++S L+ R+H  +K  L ASV ELA++A SR++ EAAKNI  P +AY+FEVSWRGF+GD
Sbjct: 293 SYLSALE-RDHLPRKQELKASVYELASQAASRSMVEAAKNIIAPTTAYQFEVSWRGFSGD 351

Query: 322 HALQARLLKAISPNALPQIFKNALSASILIDIVKVVATFFTGEVDLAIKYLEYLTMVPRF 381
            ALQARLLK ISP  LPQIFK+AL+A ILIDIVK VATFF  E  LAI +LE L  VPRF
Sbjct: 352 QALQARLLKTISPAKLPQIFKDALTAPILIDIVKCVATFFIEEPALAISFLENLVNVPRF 411

Query: 382 DLVIMCLSLADKADLRKVWDETFCNESTPIEYAEILDNLRSKYCLSQ 428
            +++MCLS ++K DL K+WDE FC+E+ PIEYAE+LD+LRSKY L Q
Sbjct: 412 SILMMCLSSSEKFDLLKIWDEVFCDEAVPIEYAEMLDSLRSKYFLKQ 458

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297853532|ref|XP_002894647.1| hypothetical protein ARALYDRAFT_474807 [Arabidopsis lyrata subsp. lyrata] gi|297340489|gb|EFH70906.1| hypothetical protein ARALYDRAFT_474807 [Arabidopsis lyrata subsp. lyrata]

 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 239/478 (50%), Positives = 319/478 (66%), Gaps = 64/478 (13%)

Query: 3   KHNRDQAL-------DWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-SYSRN 54
           KH RDQ         DW+LSL +KDKK+K +  +  N  S + +    PS SG   + +N
Sbjct: 7   KHGRDQTQGFLNDLQDWELSLKDKDKKIKQQRDNSPNPSSENFR----PSGSGQYDFVKN 62

Query: 55  YDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRA 114
           Y  V  +SSSL+ E S  D+ SEKE GNE FKQKKF EAIDCYSRSIALSP A+AYANRA
Sbjct: 63  YHSVRDLSSSLIGE-SLLDSNSEKEQGNEFFKQKKFNEAIDCYSRSIALSPNAIAYANRA 121

Query: 115 MAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN 174
           MAYLK++R++EA+ DCTEALNLDDRYIKAYSRRATARKELG +KE+ ED+EFALRLEP++
Sbjct: 122 MAYLKIKRYREADVDCTEALNLDDRYIKAYSRRATARKELGMIKEAKEDAEFALRLEPES 181

Query: 175 QEIKKQLAEVKSLYEKEVFQKASKTLEKYGKSGMKVNGHEVRAVRNTIQKTGVAEIQDLT 234
           QE+KKQ A++KSL EKE+ +KA+  ++   +  +K +G + +     IQK     ++ +T
Sbjct: 182 QELKKQYADIKSLLEKEIIEKATGAMQSTAQELLKTSGLDKK-----IQKPNTETLKPVT 236

Query: 235 ISKKTEN------------------KNLRDESKT-EGQRD-------------------- 255
           +  KT                    +N++ E K+ EG +                     
Sbjct: 237 LGTKTNRDMGQPVPGSKESSGKKLIENIQPEGKSIEGSKKIPAIMENLDSKKVTPRVQSY 296

Query: 256 -----GSGANATHISGLDKRNHRTKKAVLDASVQELATRATSRAVAEAAKNITPPKSAYE 310
                 S  N T  SG  + N  +KK  L  SVQELA  A S A++EA+KNI  PKSAYE
Sbjct: 297 EKEVKSSDRNGTQPSG--QGNQVSKKLELKPSVQELAAHAASLAMSEASKNIKAPKSAYE 354

Query: 311 FEVSWRGFAGDHALQARLLKAISPNALPQIFKNALSASILIDIVKVVATFFTGEVDLAIK 370
           FE SWR F+GD ALQ +LLK +SP+ LPQIFKNA+++ +L+DI+K VA+FFT ++DLA+K
Sbjct: 355 FENSWRSFSGDLALQTQLLKVMSPSTLPQIFKNAMTSPVLVDIIKCVASFFTEDMDLAVK 414

Query: 371 YLEYLTMVPRFDLVIMCLSLADKADLRKVWDETFCNESTPIEYAEILDNLRSKYCLSQ 428
           Y+E LT VPRF++++MCL+L +K +L K+W++ FCN++TP+EYAE+LD LRS+YCL Q
Sbjct: 415 YIENLTKVPRFNMLVMCLTLTEKNELLKLWEDVFCNKATPMEYAEVLDKLRSRYCLKQ 472

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42562786|ref|NP_176039.2| tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana] gi|53828529|gb|AAU94374.1| At1g56440 [Arabidopsis thaliana] gi|59958350|gb|AAX12885.1| At1g56440 [Arabidopsis thaliana] gi|110743110|dbj|BAE99447.1| hypothetical protein [Arabidopsis thaliana] gi|332195274|gb|AEE33395.1| tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana]

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 231/478 (48%), Positives = 321/478 (67%), Gaps = 58/478 (12%)

Query: 2   AKHNRDQALD----------WDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN-S 50
           +KH RDQ  D          W+LSL +KDKK+K + ++  N  S + +    PS SG   
Sbjct: 6   SKHGRDQTQDFQGFFNDLQDWELSLKDKDKKIKQQPANSSNPSSETFR----PSGSGKYD 61

Query: 51  YSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAY 110
           +++ Y  +  +SSSL+ E S  D++SEKE GNE FKQKKF EAIDCYSRSIALSP AV Y
Sbjct: 62  FAKKYRSIRDLSSSLIGE-SLLDSSSEKEQGNEFFKQKKFNEAIDCYSRSIALSPNAVTY 120

Query: 111 ANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRL 170
           ANRAMAYLK++R++EAE DCTEALNLDDRYIKAYSRRATARKELG +KE+ ED+EFALRL
Sbjct: 121 ANRAMAYLKIKRYREAEVDCTEALNLDDRYIKAYSRRATARKELGMIKEAKEDAEFALRL 180

Query: 171 EPQNQEIKKQLAEVKSLYEKEVFQKASKTLEKYGKSGMKVNGHE---------------- 214
           EP++QE+KKQ A++KSL EKE+ +KA+  ++   +  +K +G +                
Sbjct: 181 EPESQELKKQYADIKSLLEKEIIEKATGAMQSTAQELLKTSGLDKKIQKPKTEMTSKPVT 240

Query: 215 ---------VRAVRNTIQKTGVAEIQDLTISKKTENKNLRDESKTE-------------- 251
                    V+ V  + + +G   I+++   +K++  +++  + TE              
Sbjct: 241 LVAKTNRDIVQPVLGSNESSGKKLIENIQPEEKSKEGSMKIPAITEILDSKKVTPGSQSY 300

Query: 252 -GQRDGSGANATHISGLDKRNHRTKKAVLDASVQELATRATSRAVAEAAKNITPPKSAYE 310
             +   S  N T  SG +  N  +K+  L  SVQELA  A S A+ EA+KNI  PKSAYE
Sbjct: 301 EKEAKPSDRNGTQPSGPE--NQVSKQLELKPSVQELAAHAASLAMTEASKNIKTPKSAYE 358

Query: 311 FEVSWRGFAGDHALQARLLKAISPNALPQIFKNALSASILIDIVKVVATFFTGEVDLAIK 370
           FE SWR F+GD AL+++LLK  +P++LPQIFKNAL++ +L+DI+K VA+FFT ++DLA+K
Sbjct: 359 FENSWRSFSGDSALRSQLLKVTTPSSLPQIFKNALTSPVLVDIIKCVASFFTEDMDLAVK 418

Query: 371 YLEYLTMVPRFDLVIMCLSLADKADLRKVWDETFCNESTPIEYAEILDNLRSKYCLSQ 428
           Y+E LT VPRF++++MCL+  +K +L K+W++ FCN++TP+EYAE+LD LRS+YCL Q
Sbjct: 419 YIENLTKVPRFNMLVMCLTSTEKNELLKIWEDVFCNKATPMEYAEVLDKLRSRYCLKQ 476

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	428
MGI|MGI:1277218	660	Rpap3 "RNA polymerase II assoc	0.313	0.203	0.463	1.9e-25
RGD|1310702	893	Spag1 "sperm associated antige	0.329	0.157	0.402	2.8e-24
MGI|MGI:1349387	901	Spag1 "sperm associated antige	0.446	0.211	0.341	4.1e-24
TAIR|locus:2088600	589	TOC64-III "translocon at the o	0.271	0.196	0.487	1.6e-19
ZFIN|ZDB-GENE-040426-928	273	rpap3 "RNA polymerase II assoc	0.254	0.399	0.427	2.3e-19
UNIPROTKB|Q9MUK5	593	TOC64 "Translocon at the outer	0.301	0.217	0.393	3.8e-19
UNIPROTKB|Q07617	926	SPAG1 "Sperm-associated antige	0.502	0.232	0.341	5.1e-19
UNIPROTKB|F1P4X4	304	TOMM34 "Uncharacterized protei	0.259	0.365	0.441	2.4e-18
FB|FBgn0015544	534	spag "spaghetti" [Drosophila m	0.273	0.219	0.372	5.1e-18
ZFIN|ZDB-GENE-050327-75	481	zgc:110801 "zgc:110801" [Danio	0.308	0.274	0.345	1.1e-16

MGI|MGI:1277218 Rpap3 "RNA polymerase II associated protein 3" [Mus musculus (taxid:10090)]

 Score = 297 (109.6 bits), Expect = 1.9e-25, P = 1.9e-25
 Identities = 63/136 (46%), Positives = 91/136 (66%)

Query:    57 PVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAM 115
             P +  S     ++    A +EK+LGN  FK+ K+++AI+CY+R IA   T A+  ANRAM
Sbjct:   267 PAAGESKPTGGQQGRQKAIAEKDLGNGFFKEGKYEQAIECYTRGIAADRTNALLPANRAM 326

Query:   116 AYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQ 175
             AYLK++R++EAE DCT+A+ LD  Y KA++RR TAR  LGK+ E+ +D E  L LEP N+
Sbjct:   327 AYLKIQRYEEAERDCTQAIVLDGSYSKAFARRGTARTFLGKINEAKQDFETVLLLEPGNK 386

Query:   176 EIKKQLAEVKS-LYEK 190
             +   +L+ +K  L EK
Sbjct:   387 QAATELSRIKKELIEK 402

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

RGD|1310702 Spag1 "sperm associated antigen 1" [Rattus norvegicus (taxid:10116)]

 Score = 234 (87.4 bits), Expect = 2.8e-24, Sum P(2) = 2.8e-24
 Identities = 58/144 (40%), Positives = 83/144 (57%)

Query:    62 SSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLR 121
             ++ L  +E    A  EK  GNE F    ++EA+  Y+RS++  PTA AY NRA A +KL+
Sbjct:   201 TAGLTEKEKNFLANREKGKGNEAFYSGDYEEAVMYYTRSLSALPTATAYNNRAQAEIKLQ 260

Query:   122 RFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQL 181
             R+  A +DC +AL L+   IKA  RRAT  K   K  E+++D    L+ EP N   KK L
Sbjct:   261 RWSSALEDCEKALELEPGNIKALLRRATTYKHQNKFLEAVDDLRKVLQAEPDNDLAKKTL 320

Query:   182 AEVKSLYEKEVFQKASKTLEKYGK 205
             +EV+   E +  + AS+ L+  GK
Sbjct:   321 SEVER--ELKNSEPASE-LQTKGK 341

GO:0005525 "GTP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007338 "single fertilization" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

MGI|MGI:1349387 Spag1 "sperm associated antigen 1" [Mus musculus (taxid:10090)]

 Score = 249 (92.7 bits), Expect = 4.1e-24, Sum P(2) = 4.1e-24
 Identities = 69/202 (34%), Positives = 104/202 (51%)

Query:    62 SSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLR 121
             ++ L  +E +  A  EK  GNE F    ++EA+  Y+RS++  PTA+AY NRA A +KL+
Sbjct:   201 TAGLTEKEKSFLANREKGKGNEAFYSGDYEEAVMYYTRSLSALPTAIAYNNRAQAEIKLQ 260

Query:   122 RFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQL 181
             R+  A +DC +AL LD   +KA  RRAT  K   KL+E+++D    L++EP N   KK L
Sbjct:   261 RWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDNDLAKKTL 320

Query:   182 AEV-KSLYEKEV---FQKASKTL-----EKYGKSGMKVNGHEVRAVRNTIQKTGVAEIQD 232
             +EV + L   E     Q   K +     E  G  G K +  E R    +  +  +  IQ 
Sbjct:   321 SEVERDLKNSEPVSELQTKGKRMVIEEVENSGDEGGKGSADE-REDGGS-DEAAMGNIQK 378

Query:   233 LTISKKTENKNLRDESKTEGQR 254
               + +++E        +T G R
Sbjct:   379 KLMVRRSEGGRRSRRGRTPGPR 400

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007338 "single fertilization" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

TAIR|locus:2088600 TOC64-III "translocon at the outer membrane of chloroplasts 64-III" [Arabidopsis thaliana (taxid:3702)]

 Score = 257 (95.5 bits), Expect = 1.6e-19, P = 1.6e-19
 Identities = 59/121 (48%), Positives = 79/121 (65%)

Query:    56 DPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRA 114
             DP S    ++  EES   A   KE GN+ FK+K +++AI  YS +I LS   A  Y+NRA
Sbjct:   460 DPKSS-KKAITKEESAEIA---KEKGNQAFKEKLWQKAIGLYSEAIKLSDNNATYYSNRA 515

Query:   115 MAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN 174
              AYL+L  F +AE+DCT+A+ LD + +KAY RR TAR+ LG  K +IED  +AL LEP N
Sbjct:   516 AAYLELGGFLQAEEDCTKAITLDKKNVKAYLRRGTAREMLGDCKGAIEDFRYALVLEPNN 575

Query:   175 Q 175
             +
Sbjct:   576 K 576

GO:0016884 "carbon-nitrogen ligase activity, with glutamine as amido-N-donor" evidence=IEA

GO:0031359 "integral to chloroplast outer membrane" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009165 "nucleotide biosynthetic process" evidence=RCA

GO:0009536 "plastid" evidence=IDA

ZFIN|ZDB-GENE-040426-928 rpap3 "RNA polymerase II associated protein 3" [Danio rerio (taxid:7955)]

 Score = 235 (87.8 bits), Expect = 2.3e-19, P = 2.3e-19
 Identities = 47/110 (42%), Positives = 69/110 (62%)

Query:    74 ATSEKELGNECFKQKKFKEAIDCYSRSIALSP-TAVAYANRAMAYLKLRRFQEAEDDCTE 132
             A +EKE GN+ FK  +F  A++CY+R++   P   V   NRA  + +L++F  AE DC  
Sbjct:   128 ALAEKEKGNQFFKDGQFDSAVECYTRAMDADPYNPVPPTNRATCFYRLKKFAVAESDCNL 187

Query:   133 ALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLA 182
             A+ LD +Y+KAY RRA  R  L K  E++ED E  L+L+P N E +++ A
Sbjct:   188 AIALDSKYVKAYIRRAATRTALEKHPEALEDYEMVLKLDPGNSERERERA 237

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q9MUK5 TOC64 "Translocon at the outer membrane of chloroplasts 64" [Pisum sativum (taxid:3888)]

 Score = 254 (94.5 bits), Expect = 3.8e-19, P = 3.8e-19
 Identities = 52/132 (39%), Positives = 86/132 (65%)

Query:    59 SHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIAL-SPTAVAYANRAMAY 117
             S  S S++++E + + + EK  GN+ +K K++++AI  Y+ +I L    A  Y+NRA AY
Sbjct:   464 SKSSKSVVSKEQSAEISKEK--GNQAYKDKQWQKAIGFYTEAIKLCGNNATYYSNRAQAY 521

Query:   118 LKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI 177
             L+L  + +AE+DCT A++ D + +KAY RR TAR+ LG  KE+I+D ++AL LEP N+  
Sbjct:   522 LELGSYLQAEEDCTTAISFDKKNVKAYFRRGTAREMLGYYKEAIDDFKYALVLEPTNKRA 581

Query:   178 KKQLAEVKSLYE 189
                   ++ L++
Sbjct:   582 ASSAERLRKLFQ 593

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q07617 SPAG1 "Sperm-associated antigen 1" [Homo sapiens (taxid:9606)]

 Score = 256 (95.2 bits), Expect = 5.1e-19, P = 5.1e-19
 Identities = 81/237 (34%), Positives = 114/237 (48%)

Query:    62 SSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLR 121
             ++ L  +E    AT EKE GNE F    ++EA+  Y+RSI+  PT VAY NRA A +KL+
Sbjct:   197 TAGLTEKEKDFLATREKEKGNEAFNSGDYEEAVMYYTRSISALPTVVAYNNRAQAEIKLQ 256

Query:   122 RFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQL 181
              +  A  DC + L L+   +KA  RRAT  K   KL+E+ ED    L +EP N   KK L
Sbjct:   257 NWNSAFQDCEKVLELEPGNVKALLRRATTYKHQNKLREATEDLSKVLDVEPDNDLAKKTL 316

Query:   182 AEV-KSLYEKE------------VFQKASKTLEKYGKSGMKVNGHEVRAV-RNTIQKTGV 227
             +EV + L   E            V Q+   + ++ GKSG K   HE     +   +  G 
Sbjct:   317 SEVERDLKNSEAASETQTKGKRMVIQEIENSEDEEGKSGRK---HEDGGGDKKPAEPAGA 373

Query:   228 AEIQDLTISKKTENKNLRDESKTEGQRDGSGA---NATHISGLDKRNHRTKKAVLDA 281
             A      +    + K L  +++  G+R   GA     T  +G DKR+ R   A   A
Sbjct:   374 ARAAQPCVMGNIQKK-LTGKAEG-GKRPARGAPQRGQTPEAGADKRSPRRASAAAAA 428

GO:0005525 "GTP binding" evidence=IEA

GO:0007338 "single fertilization" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|F1P4X4 TOMM34 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 226 (84.6 bits), Expect = 2.4e-18, P = 2.4e-18
 Identities = 49/111 (44%), Positives = 68/111 (61%)

Query:    74 ATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEA 133
             A + KE GN+  K+   K+AI+ YS S+ L+     Y NRA+ YL L++ +EA  DCTEA
Sbjct:   191 AQTLKEEGNKLVKKGNHKKAIEKYSESLKLNQECATYTNRALCYLTLKQHKEAVQDCTEA 250

Query:   134 LNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEV 184
             L LD + +KA+ RRA A KEL   K SI D    L++EP+N    + L E+
Sbjct:   251 LRLDPKNVKAFYRRAQALKELKDYKSSIADINSLLKIEPKNTAALRLLQEL 301

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0006626 "protein targeting to mitochondrion" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

FB|FBgn0015544 spag "spaghetti" [Drosophila melanogaster (taxid:7227)]

 Score = 201 (75.8 bits), Expect = 5.1e-18, Sum P(2) = 5.1e-18
 Identities = 44/118 (37%), Positives = 66/118 (55%)

Query:    74 ATSEKELGNECFKQKKFKEAIDCYSRSIALSP-TAVAYANRAMAYLKLRRFQEAEDDCTE 132
             A   K+ GN   KQ ++++AI  YS +IA+ P   + + NRA+ YLK   F +  +DC  
Sbjct:    96 ANDIKDRGNTYVKQGEYEKAIVAYSTAIAVYPHDPIYHINRALCYLKQESFDQCVEDCEA 155

Query:   133 ALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEK 190
             A+ LD   +KAY RR  A + LG   E+++D    L +EP+N E K+ LA +     K
Sbjct:   156 AIALDKLCVKAYYRRMQANESLGNNMEALKDCTTVLAIEPKNIEAKRSLARINDRLRK 213

GO:0008283 "cell proliferation" evidence=IMP

GO:0004722 "protein serine/threonine phosphatase activity" evidence=ISS

GO:0007446 "imaginal disc growth" evidence=IMP

GO:0051087 "chaperone binding" evidence=IPI

GO:0046529 "imaginal disc fusion, thorax closure" evidence=IMP

GO:0007444 "imaginal disc development" evidence=IMP

ZFIN|ZDB-GENE-050327-75 zgc:110801 "zgc:110801" [Danio rerio (taxid:7955)]

 Score = 231 (86.4 bits), Expect = 1.1e-16, P = 1.1e-16
 Identities = 46/133 (34%), Positives = 78/133 (58%)

Query:    65 LMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRF 123
             +  EE    A   KE  N+ FK K ++ AI  Y+ ++ L+PT  + Y+NR+++YL+   +
Sbjct:     1 MAEEERNASAEKLKEKANDYFKDKDYENAIKYYTEALDLNPTNPIYYSNRSLSYLRTECY 60

Query:   124 QEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAE 183
               A  D T AL LD  Y+K Y RRAT+   LGK K +++D E  +R+ P +++ K +  E
Sbjct:    61 GYALADATRALELDKNYLKGYYRRATSNMALGKFKAALKDYETVVRVRPNDKDAKMKYQE 120

Query:   184 VKSLYEKEVFQKA 196
                + +++ F++A
Sbjct:   121 CNKIVKQKAFERA 133

GO:0016787 "hydrolase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0004721 "phosphoprotein phosphatase activity" evidence=IEA

GO:0006470 "protein dephosphorylation" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.XIII.605.1 hypothetical protein (471 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	428
pfam13877	94	pfam13877, RPAP3_C, Potential Monad-binding region	6e-28
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	2e-20
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	3e-16
pfam13414	69	pfam13414, TPR_11, TPR repeat	2e-12
pfam13414	69	pfam13414, TPR_11, TPR repeat	1e-09
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	3e-09
PLN03088	356	PLN03088, PLN03088, SGT1, suppressor of G2 allele	1e-08
pfam00515	34	pfam00515, TPR_1, Tetratricopeptide repeat	5e-05
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	5e-05
smart00028	34	smart00028, TPR, Tetratricopeptide repeats	9e-05
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	1e-04
pfam00515	34	pfam00515, TPR_1, Tetratricopeptide repeat	3e-04
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	7e-04
smart00028	34	smart00028, TPR, Tetratricopeptide repeats	0.001
pfam07719	34	pfam07719, TPR_2, Tetratricopeptide repeat	0.002

>gnl|CDD|222431 pfam13877, RPAP3_C, Potential Monad-binding region of RPAP3

 Score =  105 bits (265), Expect = 6e-28
 Identities = 38/92 (41%), Positives = 58/92 (63%), Gaps = 1/92 (1%)

Query: 303 TPPKSAYEFEVSWRGFAGDHALQARLLKAISPNALPQIFKNALSASILIDIVKVVATFF- 361
             PK+AYEFE +WR  +GD  L+ + LK I P++LP++F N+L   +L DI+K +     
Sbjct: 2   PAPKNAYEFERAWRRLSGDPDLRYQYLKNIPPDSLPKLFGNSLDPDLLGDILKALNEHLV 61

Query: 362 TGEVDLAIKYLEYLTMVPRFDLVIMCLSLADK 393
             + DL  + LE L+ V RFD+ +M LS ++K
Sbjct: 62  PKDPDLVAEILENLSKVKRFDMALMFLSKSEK 93

This domain is found at the C-terminus of RNA-polymerase II-associated proteins. These proteins bind to Monad and are involved in regulating apoptosis. They contain TPR-repeats towards the N_terminus. Length = 94

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 85.5 bits (212), Expect = 2e-20
 Identities = 39/97 (40%), Positives = 56/97 (57%), Gaps = 1/97 (1%)

Query: 78  KELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNL 136
             LGN  +K   + EA++ Y +++ L P  A AY N A AY KL +++EA +D  +AL L
Sbjct: 4   LNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL 63

Query: 137 DDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQ 173
           D    KAY     A  +LGK +E++E  E AL L+P 
Sbjct: 64  DPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 80.4 bits (198), Expect = 3e-16
 Identities = 45/146 (30%), Positives = 70/146 (47%), Gaps = 1/146 (0%)

Query: 19  KDKKMKHKASSKDNLVSSSLKSAKKPS-PSGNSYSRNYDPVSHISSSLMNEESTPDATSE 77
           K ++ K K + K+    +  K +  P            +      ++L  EE    A   
Sbjct: 71  KKERRKRKQAEKETEGKTEEKKSTAPKNAPVEPADELPEIDESSVANLSEEERKKYAAKL 130

Query: 78  KELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLD 137
           KE GN+ ++ K F +AI  YS++I   P  V Y+NRA  +  L  +++  +D T AL LD
Sbjct: 131 KEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD 190

Query: 138 DRYIKAYSRRATARKELGKLKESIED 163
             Y KA +RRA A   LGK  +++ D
Sbjct: 191 PDYSKALNRRANAYDGLGKYADALLD 216

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 61.9 bits (151), Expect = 2e-12
 Identities = 30/67 (44%), Positives = 43/67 (64%), Gaps = 2/67 (2%)

Query: 73  DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKL-RRFQEAEDDC 130
           +A + K LGN  FK   + EAI+ Y +++ L P  A AY N A+AYLKL + ++EA +D 
Sbjct: 2   NAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDL 61

Query: 131 TEALNLD 137
            +AL LD
Sbjct: 62  EKALELD 68

Length = 69

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 53.9 bits (130), Expect = 1e-09
 Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 1/67 (1%)

Query: 107 AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGK-LKESIEDSE 165
           A A  N   A  KL  + EA +   +AL LD    +AY   A A  +LGK  +E++ED E
Sbjct: 3   AEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLE 62

Query: 166 FALRLEP 172
            AL L+P
Sbjct: 63  KALELDP 69

Length = 69

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 53.5 bits (129), Expect = 3e-09
 Identities = 32/94 (34%), Positives = 47/94 (50%), Gaps = 2/94 (2%)

Query: 109 AYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFAL 168
           A  N    Y KL  + EA +   +AL LD     AY   A A  +LGK +E++ED E AL
Sbjct: 2   ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61

Query: 169 RLEPQNQEIKKQLAEVKSLYEKEVFQKASKTLEK 202
            L+P N +    L    + Y+   +++A +  EK
Sbjct: 62  ELDPDNAKAYYNLG--LAYYKLGKYEEALEAYEK 93

Length = 100

>gnl|CDD|215568 PLN03088, PLN03088, SGT1, suppressor of G2 allele of SKP1; Provisional

 Score = 56.3 bits (136), Expect = 1e-08
 Identities = 37/114 (32%), Positives = 54/114 (47%), Gaps = 1/114 (0%)

Query: 79  ELGNECFKQKKFKEAIDCYSRSIALSP-TAVAYANRAMAYLKLRRFQEAEDDCTEALNLD 137
           +   E F    F  A+D Y+++I L P  A  YA+RA A +KL  F EA  D  +A+ LD
Sbjct: 7   DKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELD 66

Query: 138 DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKE 191
               KAY R+ TA  +L + + +    E    L P +    K + E      +E
Sbjct: 67  PSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAEE 120

Length = 356

>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat

 Score = 40.1 bits (95), Expect = 5e-05
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 107 AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY 140
           A A  N   AYLKL ++ EA +   +AL L+   
Sbjct: 1   AKALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34

Length = 34

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 41.2 bits (97), Expect = 5e-05
 Identities = 17/65 (26%), Positives = 28/65 (43%)

Query: 106 TAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSE 165
            A A  N A+   +L  + EA +   +AL L     + +   A A   L +L  ++ D +
Sbjct: 4   LAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYD 63

Query: 166 FALRL 170
            AL  
Sbjct: 64  EALEY 68

Length = 78

>gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats

 Score = 39.0 bits (92), Expect = 9e-05
 Identities = 14/31 (45%), Positives = 17/31 (54%)

Query: 107 AVAYANRAMAYLKLRRFQEAEDDCTEALNLD 137
           A A  N   AYLKL  + EA +   +AL LD
Sbjct: 1   AEALYNLGNAYLKLGDYDEALEYYEKALELD 31

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 8/74 (10%)

Query: 74  ATSEKELGNECFKQKKFKEAIDCYSRSIALSP--------TAVAYANRAMAYLKLRRFQE 125
           A +   L     +   + EA++   +++ L+         TA A  N A  YL L  + E
Sbjct: 5   AAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDE 64

Query: 126 AEDDCTEALNLDDR 139
           A +   +AL L + 
Sbjct: 65  ALEYLEKALALREA 78

Length = 78

>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat

 Score = 37.4 bits (88), Expect = 3e-04
 Identities = 10/27 (37%), Positives = 17/27 (62%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSPT 106
           LGN   K  K+ EA++ Y +++ L+P 
Sbjct: 7   LGNAYLKLGKYDEALEYYEKALELNPN 33

Length = 34

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 41.0 bits (94), Expect = 7e-04
 Identities = 36/123 (29%), Positives = 61/123 (49%), Gaps = 7/123 (5%)

Query: 85  FKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNLD-DR 139
           ++   ++EA++ Y +++ L P     A A          L R++EA +   +AL L+ D 
Sbjct: 141 YELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDD 200

Query: 140 YIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKT 199
             +A         +LGK +E++E  E AL L+P N E    LA +  L E   +++A + 
Sbjct: 201 DAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALL--LLELGRYEEALEA 258

Query: 200 LEK 202
           LEK
Sbjct: 259 LEK 261

Length = 291

>gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats

 Score = 36.3 bits (85), Expect = 0.001
 Identities = 9/29 (31%), Positives = 15/29 (51%)

Query: 78  KELGNECFKQKKFKEAIDCYSRSIALSPT 106
             LGN   K   + EA++ Y +++ L P 
Sbjct: 5   YNLGNAYLKLGDYDEALEYYEKALELDPN 33

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34

>gnl|CDD|191825 pfam07719, TPR_2, Tetratricopeptide repeat

 Score = 35.2 bits (82), Expect = 0.002
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 107 AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY 140
           A A  N  +AY KL  ++EA +   +AL LD   
Sbjct: 1   AEALYNLGLAYYKLGDYEEALEAYEKALELDPNN 34

This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515. Length = 34

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	428
PF13877	94	RPAP3_C: Potential Monad-binding region of RPAP3	99.94
KOG4648	536	consensus Uncharacterized conserved protein, conta	99.94
KOG0553	304	consensus TPR repeat-containing protein [General f	99.79
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.78
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.76
PRK15359	144	type III secretion system chaperone protein SscB;	99.69
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.63
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.63
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.62
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.6
KOG1126	638	consensus DNA-binding cell division cycle control	99.6
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.56
KOG4648	536	consensus Uncharacterized conserved protein, conta	99.56
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.55
KOG1126	638	consensus DNA-binding cell division cycle control	99.55
KOG4234	271	consensus TPR repeat-containing protein [General f	99.53
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.51
PRK11189	296	lipoprotein NlpI; Provisional	99.51
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.49
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.49
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.48
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.48
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.47
PRK12370	553	invasion protein regulator; Provisional	99.47
PLN02789	320	farnesyltranstransferase	99.46
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.45
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.45
PRK12370	553	invasion protein regulator; Provisional	99.44
PRK15359	144	type III secretion system chaperone protein SscB;	99.44
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.43
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.43
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.43
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.42
PRK11189	296	lipoprotein NlpI; Provisional	99.42
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.4
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.38
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.36
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.35
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.34
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.32
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.31
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.3
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.29
KOG0553	304	consensus TPR repeat-containing protein [General f	99.28
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.28
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.25
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.25
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.25
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.24
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.22
KOG1125	579	consensus TPR repeat-containing protein [General f	99.22
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.22
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.21
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	99.21
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.2
KOG1125	579	consensus TPR repeat-containing protein [General f	99.2
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.19
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.18
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.18
PLN02789	320	farnesyltranstransferase	99.18
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.17
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.17
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.16
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.16
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.14
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.11
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.11
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	99.11
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.11
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	99.1
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.1
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.09
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.09
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.06
KOG2076	895	consensus RNA polymerase III transcription factor	99.06
KOG1129	478	consensus TPR repeat-containing protein [General f	99.05
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.05
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.02
PRK15331	165	chaperone protein SicA; Provisional	99.02
KOG3060	289	consensus Uncharacterized conserved protein [Funct	99.01
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	99.01
PRK14574	822	hmsH outer membrane protein; Provisional	99.0
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.0
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.0
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.99
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.97
KOG2003	840	consensus TPR repeat-containing protein [General f	98.94
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.94
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.94
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.93
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.92
KOG1129	478	consensus TPR repeat-containing protein [General f	98.92
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.92
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.91
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.89
PRK10803	263	tol-pal system protein YbgF; Provisional	98.89
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.88
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.88
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.86
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.84
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.83
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.82
PF12688	120	TPR_5: Tetratrico peptide repeat	98.82
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.81
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.8
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.8
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.79
KOG4555	175	consensus TPR repeat-containing protein [Function	98.78
PRK14574	822	hmsH outer membrane protein; Provisional	98.78
PF13512	142	TPR_18: Tetratricopeptide repeat	98.77
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.77
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.77
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.74
KOG2076	895	consensus RNA polymerase III transcription factor	98.72
KOG2003	840	consensus TPR repeat-containing protein [General f	98.72
KOG4234	271	consensus TPR repeat-containing protein [General f	98.71
KOG0495	913	consensus HAT repeat protein [RNA processing and m	98.7
PF13371	73	TPR_9: Tetratricopeptide repeat	98.68
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.68
PRK11906	458	transcriptional regulator; Provisional	98.68
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.68
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.66
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.66
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.64
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.64
PF13371	73	TPR_9: Tetratricopeptide repeat	98.64
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.62
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.62
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.61
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.6
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.6
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.59
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.59
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.59
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.58
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.58
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.57
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.57
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.57
PRK10803	263	tol-pal system protein YbgF; Provisional	98.56
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.55
PRK15331	165	chaperone protein SicA; Provisional	98.54
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.52
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.52
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.51
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.48
KOG0495	913	consensus HAT repeat protein [RNA processing and m	98.47
PRK11906	458	transcriptional regulator; Provisional	98.47
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.45
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.45
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.44
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	98.4
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.39
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.39
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	98.39
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.36
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.34
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.34
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	98.28
PF13512	142	TPR_18: Tetratricopeptide repeat	98.26
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.26
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.24
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.21
KOG4555	175	consensus TPR repeat-containing protein [Function	98.2
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.2
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.11
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.11
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.08
KOG3785	557	consensus Uncharacterized conserved protein [Funct	98.06
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.06
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	98.03
PF12688	120	TPR_5: Tetratrico peptide repeat	98.0
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.99
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.92
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.91
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.91
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.9
PLN03218	1060	maturation of RBCL 1; Provisional	97.89
PLN03218	1060	maturation of RBCL 1; Provisional	97.88
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	97.88
PF13428	44	TPR_14: Tetratricopeptide repeat	97.88
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	97.87
PF13431	34	TPR_17: Tetratricopeptide repeat	97.84
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.84
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	97.8
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.79
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.77
KOG2376	652	consensus Signal recognition particle, subunit Srp	97.77
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.76
KOG1310	758	consensus WD40 repeat protein [General function pr	97.74
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.73
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	97.72
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.71
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.71
KOG1915	677	consensus Cell cycle control protein (crooked neck	97.7
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.67
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.66
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.63
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.62
PF13431	34	TPR_17: Tetratricopeptide repeat	97.6
PLN03077	857	Protein ECB2; Provisional	97.57
PLN03077	857	Protein ECB2; Provisional	97.55
PF13428	44	TPR_14: Tetratricopeptide repeat	97.52
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.51
KOG1586	288	consensus Protein required for fusion of vesicles	97.48
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.48
PRK04841	903	transcriptional regulator MalT; Provisional	97.44
KOG4340	459	consensus Uncharacterized conserved protein [Funct	97.42
KOG4507	886	consensus Uncharacterized conserved protein, conta	97.42
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	97.37
KOG1941	518	consensus Acetylcholine receptor-associated protei	97.36
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.28
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.28
KOG1586	288	consensus Protein required for fusion of vesicles	97.25
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	97.15
KOG2610	491	consensus Uncharacterized conserved protein [Funct	97.06
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.03
PRK10941	269	hypothetical protein; Provisional	97.03
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.01
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.99
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	96.95
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	96.95
PRK04841	903	transcriptional regulator MalT; Provisional	96.95
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	96.91
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	96.9
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.89
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.86
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	96.83
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	96.82
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	96.78
KOG2471	696	consensus TPR repeat-containing protein [General f	96.76
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	96.76
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	96.75
KOG1915	677	consensus Cell cycle control protein (crooked neck	96.69
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	96.66
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	96.52
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	96.52
KOG2471	696	consensus TPR repeat-containing protein [General f	96.36
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	96.35
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.35
KOG1941	518	consensus Acetylcholine receptor-associated protei	96.33
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.29
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	96.26
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.26
PRK10941	269	hypothetical protein; Provisional	96.21
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	96.19
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.17
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	96.12
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.11
KOG3364	149	consensus Membrane protein involved in organellar	96.0
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	95.98
KOG4507	886	consensus Uncharacterized conserved protein, conta	95.95
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	95.91
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	95.86
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	95.7
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	95.7
KOG4814	872	consensus Uncharacterized conserved protein [Funct	95.66
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	95.64
KOG2047	835	consensus mRNA splicing factor [RNA processing and	95.64
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	95.59
KOG2047	835	consensus mRNA splicing factor [RNA processing and	95.57
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	95.5
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	95.5
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	95.48
COG4976	287	Predicted methyltransferase (contains TPR repeat)	95.47
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	95.34
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	95.28
COG3898	531	Uncharacterized membrane-bound protein [Function u	95.16
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	95.1
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	95.06
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	95.06
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	94.87
KOG3364	149	consensus Membrane protein involved in organellar	94.86
COG4976	287	Predicted methyltransferase (contains TPR repeat)	94.82
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	94.74
KOG1585	308	consensus Protein required for fusion of vesicles	94.35
COG2912	269	Uncharacterized conserved protein [Function unknow	94.34
KOG2300	629	consensus Uncharacterized conserved protein [Funct	94.26
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	94.18
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	93.94
COG3898	531	Uncharacterized membrane-bound protein [Function u	93.94
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	93.83
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	93.82
KOG1585	308	consensus Protein required for fusion of vesicles	93.74
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	93.51
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	93.5
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	93.48
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	93.35
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	93.02
COG5191	435	Uncharacterized conserved protein, contains HAT (H	92.78
KOG1550	552	consensus Extracellular protein SEL-1 and related	92.69
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	92.55
KOG2610	491	consensus Uncharacterized conserved protein [Funct	92.42
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	92.37
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	92.35
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	92.24
KOG1310	758	consensus WD40 repeat protein [General function pr	91.92
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	91.87
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	91.83
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	91.5
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	91.38
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	91.35
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	91.16
COG2912	269	Uncharacterized conserved protein [Function unknow	91.11
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	91.02
KOG1550	552	consensus Extracellular protein SEL-1 and related	90.98
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	90.69
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	90.65
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	90.61
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	90.24
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	90.22
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	90.17
COG3118	304	Thioredoxin domain-containing protein [Posttransla	90.13
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	90.05
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	89.77
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	89.05
KOG2041	1189	consensus WD40 repeat protein [General function pr	88.87
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	88.82
COG3629	280	DnrI DNA-binding transcriptional activator of the	87.97
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	87.93
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	87.74
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	87.72
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	87.14
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	86.92
KOG2300	629	consensus Uncharacterized conserved protein [Funct	86.66
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	86.42
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	86.39
KOG1258	577	consensus mRNA processing protein [RNA processing	86.26
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	86.16
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	86.01
KOG0529	421	consensus Protein geranylgeranyltransferase type I	85.47
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	85.24
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	84.32
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	84.14
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	83.86
KOG4814	872	consensus Uncharacterized conserved protein [Funct	83.72
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	83.08
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	82.94
KOG3616	1636	consensus Selective LIM binding factor [Transcript	82.74
KOG2581	493	consensus 26S proteasome regulatory complex, subun	82.2
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	82.09
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	81.53
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	81.39
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	81.22
COG3947	361	Response regulator containing CheY-like receiver a	80.94
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	80.47
COG5191	435	Uncharacterized conserved protein, contains HAT (H	80.41
COG3629	280	DnrI DNA-binding transcriptional activator of the	80.18

>PF13877 RPAP3_C: Potential Monad-binding region of RPAP3

Probab=99.94  E-value=5e-27  Score=187.68  Aligned_cols=93  Identities=38%  Similarity=0.670  Sum_probs=89.5

Q ss_pred             CCCCCCHHHHHHHHHhccCCHHHHHHHHhhcCCCchhHHhhhcCCHHHHHHHHHHHHhhcc-ccHHHHHHHHHhccCCCc
Q 014256          302 ITPPKSAYEFEVSWRGFAGDHALQARLLKAISPNALPQIFKNALSASILIDIVKVVATFFT-GEVDLAIKYLEYLTMVPR  380 (428)
Q Consensus       302 ~~~P~~~~ef~~~w~~~~~~~~~~~~yL~~i~p~~l~~if~~~l~~~~l~~il~~l~~~~~-~~~~~~~~~L~~l~~~~R  380 (428)
                      |++|+|++||+++||+++++++.+|+||+.|+|+.||+||+++|++++|++||.+|++++. .++..|+++|++|++++|
T Consensus         1 p~~P~~~~eF~~~w~~~~~~~~~~~~yL~~i~p~~l~~if~~~l~~~~L~~il~~l~~~~~~~~~~~i~~~L~~L~~~~R   80 (94)
T PF13877_consen    1 PPAPKNSYEFERDWRRLKKDPEERYEYLKSIPPDSLPKIFKNSLEPEFLSEILEALNEHFIPEDPEFIFEILEALSKVKR   80 (94)
T ss_pred             CcCCCCHHHHHHHHHHHcCCHHHHHHHHHhCChHHHHHHHHccCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHhcCCCC
Confidence            5689999999999999999999999999999999999999999999999999999999887 678999999999999999


Q ss_pred             hhHHHhccChhhHH
Q 014256          381 FDLVIMCLSLADKA  394 (428)
Q Consensus       381 F~~~~~~ls~~ek~  394 (428)
                      |+|++|||+++||+
T Consensus        81 F~l~~~fl~~~eK~   94 (94)
T PF13877_consen   81 FDLAVMFLSSSEKK   94 (94)
T ss_pred             HHHHHHhcCHhhCC
Confidence            99999999999985

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=99.94  E-value=7.6e-26  Score=211.07  Aligned_cols=412  Identities=27%  Similarity=0.391  Sum_probs=247.5

Q ss_pred             ccchhhhhh----------hhhhcchhhhhhhhhcccchhhhhccChhhhhcCCCccc---cCCCCcchHHHHHhhhhc-
Q 014256            2 AKHNRDQAL----------DWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGN---SYSRNYDPVSHISSSLMN-   67 (428)
Q Consensus         2 ~~~~~~qa~----------~~e~~~~e~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~y---~~g~~~~Ai~~~~~al~~-   67 (428)
                      .+|+++++.          +||.++.+++++++.+...-..-        ..-+...|   ..|.+.+.-.-++.-+.. 
T Consensus        11 q~qvrqna~e~Q~F~~DL~~WE~diK~KDkel~~Q~~~Pan~--------~~P~r~~FR~~ksGK~~~ssKK~Rs~I~~~   82 (536)
T KOG4648|consen   11 QRQVRQNAREYQNFVKDLYSWEQDIKNKDKELQKQPLSPANK--------DLPVRSHFRTDKSGKESPSSKKARSPIEKQ   82 (536)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHhhhHHHHhCCCCcccc--------CCchhhhcccCCCCCcCcchhhhhcchhhc
Confidence            367777776          99999999998877764111110        00111111   233443333333321110 


Q ss_pred             -CCCC-------chHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 014256           68 -EEST-------PDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD  138 (428)
Q Consensus        68 -~p~~-------~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p  138 (428)
                       -+-+       ..+..++..||.||++|+|++||.||.+++.++|. ++++.|||++|+++++|..|+.+|+.|+.+|.
T Consensus        83 dL~vd~I~~~LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~  162 (536)
T KOG4648|consen   83 DLPVDPIAQQLLKKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK  162 (536)
T ss_pred             cCCccHHHHHHHHhhHHHHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH
Confidence             0000       01112689999999999999999999999999996 99999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhchhhhH--hhhcccc---------
Q 014256          139 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKTL--EKYGKSG---------  207 (428)
Q Consensus       139 ~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~~a~~~~~~~~~--~~~~~~~---------  207 (428)
                      .+.++|.|+|.++..+|+..+|..+++.+|+|+|++.+++..+..+....++.|..+.....  ...+...         
T Consensus       163 ~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~E~~I~~KsT~G~~~A~Q~~~Q~l~~K~~G~  242 (536)
T KOG4648|consen  163 LYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINSLRERKIATKSTPGFTPARQGMIQILPIKKPGY  242 (536)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcchHhhhHHhhcCCCCCccccchhhhccccCcch
Confidence            99999999999999999999999999999999999999988888877777666554432110  0000000         


Q ss_pred             ----ccccCccccccccccccCCc-------------------------cccccc-chhhhhcccccccc----c---cc
Q 014256          208 ----MKVNGHEVRAVRNTIQKTGV-------------------------AEIQDL-TISKKTENKNLRDE----S---KT  250 (428)
Q Consensus       208 ----~~~~~~~i~~v~~~~~~~~~-------------------------~~~~~~-~~~~~~~~~~~~~~----~---~~  250 (428)
                          ......-|..+.......+.                         ..+.+. +-+..+.-.++.+.    +   ++
T Consensus       243 ~Fsk~~~~~~~i~~~~~~~A~~~~~~~L~~~~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~  322 (536)
T KOG4648|consen  243 KFSKKAMRSVPVVDVVSPRATIDDSNQLRISDEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEVKP  322 (536)
T ss_pred             hhhhhhccccceeEeeccccccCccccCcccHHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhhhcCc
Confidence                00000000000000000000                         000000 00000000000000    0   00


Q ss_pred             C-------CC-CCCCC-------Ccccccc--------Ccc-c--ccccccccc-cch---------hhH--HHhhhhhh
Q 014256          251 E-------GQ-RDGSG-------ANATHIS--------GLD-K--RNHRTKKAV-LDA---------SVQ--ELATRATS  292 (428)
Q Consensus       251 ~-------~~-~~~~~-------~~~~~~~--------~~~-~--~~~~~~~~~-~~~---------~~~--~~~~~~~~  292 (428)
                      .       .+ ...++       .+.++.+        +.+ +  ......++. |..         .+|  +++.....
T Consensus       323 ~~~T~~~~~P~~~~~~~~~sr~~~~ii~~~~~~~~~~~~~~~~~~V~~i~~~~~PP~~~i~~~~~~N~iQT~~i~~sss~  402 (536)
T KOG4648|consen  323 TKQTAVKVAPAVETPKETETRKDTKIVPESDNEAKPSAPKKTAVEVPKVQTQVSPPKTTIERSPEVNTVQTEKIEQASSN  402 (536)
T ss_pred             chhheeeeccccccchhhhhhhccccccccccccccCCccccccccCCCCCCCCCCcceeEecCCcceeeeeeccccccc
Confidence            0       00 00000       0001110        000 0  000000000 000         011  11111111


Q ss_pred             HHHHHhc---cCCCCCCCHHHHHHHHHhccCCHHHHHHHHhhcCCCchhHHhhhcCCHHHHHHHHHHHHhhcccc-HHHH
Q 014256          293 RAVAEAA---KNITPPKSAYEFEVSWRGFAGDHALQARLLKAISPNALPQIFKNALSASILIDIVKVVATFFTGE-VDLA  368 (428)
Q Consensus       293 ~~~~~~~---~~~~~P~~~~ef~~~w~~~~~~~~~~~~yL~~i~p~~l~~if~~~l~~~~l~~il~~l~~~~~~~-~~~~  368 (428)
                      .++...+   ..+.+|++..+|-..|..+.+ |. +|+||+.++-.++.+|.......+.|.+.++..+.+++++ +.-.
T Consensus       403 ~A~~~~PI~~~~~~A~T~T~~~~~s~~~~~~-P~-r~~~LK~~EV~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~K~~~~  480 (536)
T KOG4648|consen  403 NAMSPSPIERFLPPAPTSTAQFHVTWKELSG-PQ-KYQYLKSIEVPNLCKILGAGFDSDTFADLLRTIHDFFVPNKEPNT  480 (536)
T ss_pred             cCCCCCchhhhCCCCCCccchhcccHhhhcc-ch-hhhheeeeeccchhhhcccccchHHHHHHHhhhccccccCCCCcc
Confidence            1111111   246789999999999999977 33 9999999999999999999999999999999999999854 3334


Q ss_pred             HHHHHhccCCCchhHHHhccChhhHHHHHHHHHHhhcCCCCCcchHHHHHHHHhhhcc
Q 014256          369 IKYLEYLTMVPRFDLVIMCLSLADKADLRKVWDETFCNESTPIEYAEILDNLRSKYCL  426 (428)
Q Consensus       369 ~~~L~~l~~~~RF~~~~~~ls~~ek~~~~~l~~~l~~~~~~~~~~~~~~~~L~~~y~~  426 (428)
                      .-.|.-.++..-|.+..||++-.++..+..++..+.   .++....--+.+|-.-|++
T Consensus       481 A~~~L~~~~~~~F~i~s~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~NL~~~~~~  535 (536)
T KOG4648|consen  481 AAVLLEISKNDEFTILAMLMSAEEKKMVSSILNAIK---NWPSKNPAVLDNLFKEYGV  535 (536)
T ss_pred             ceeeeccCCCchhhHHHHHHhhhccccHHHHHHhhc---CcccCCHHHHhhccHhhcc
Confidence            556677899999999999999999999988877665   2232223335566666654

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.79  E-value=1.2e-18  Score=161.67  Aligned_cols=119  Identities=42%  Similarity=0.618  Sum_probs=113.2

Q ss_pred             chHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 014256           72 PDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATA  150 (428)
Q Consensus        72 ~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~  150 (428)
                      ..+..++..|+-+++.++|.+|+..|++||+++|. +++|.|||.+|.++|.|+.|+++|+.||.+||.+.++|.|+|.+
T Consensus        79 ~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A  158 (304)
T KOG0553|consen   79 ALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLA  158 (304)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence            35667999999999999999999999999999998 99999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHH
Q 014256          151 RKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEK  190 (428)
Q Consensus       151 ~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~~  190 (428)
                      |..+|+|.+|+..|+++|.++|++...+..+..|...+++
T Consensus       159 ~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e  198 (304)
T KOG0553|consen  159 YLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNE  198 (304)
T ss_pred             HHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999888776653

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.78  E-value=4.7e-18  Score=169.33  Aligned_cols=168  Identities=20%  Similarity=0.221  Sum_probs=145.8

Q ss_pred             hccChhhhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHH
Q 014256           34 VSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYA  111 (428)
Q Consensus        34 ~~~~~~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~  111 (428)
                      ..+++..+...++..| .+|..+-||..|++++...|+++.+  +.++|+++-..|+..+|..||.+++.+.|+ +.+++
T Consensus       281 lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~A--y~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~  358 (966)
T KOG4626|consen  281 LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDA--YNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMN  358 (966)
T ss_pred             cCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHH--HhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHH
Confidence            5677777777777777 8999999999999999999999988  669999999999999999999999999998 88999


Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH----------HHHH
Q 014256          112 NRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI----------KKQL  181 (428)
Q Consensus       112 nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~----------~~~l  181 (428)
                      |+|.+|..+|.+++|...|..++...|..+.++.++|.+|..+|++++|+..|+.++++.|...++          .+..
T Consensus       359 NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v  438 (966)
T KOG4626|consen  359 NLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDV  438 (966)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhH
Confidence            999999999999999999999999999999999999999999999999999999999999987776          4567


Q ss_pred             HHHHHHHHHHHHhchhhhHhhh
Q 014256          182 AEVKSLYEKEVFQKASKTLEKY  203 (428)
Q Consensus       182 ~~a~~~~~~a~~~~~~~~~~~~  203 (428)
                      ..|++.|.++|..+|..++...
T Consensus       439 ~~A~q~y~rAI~~nPt~AeAhs  460 (966)
T KOG4626|consen  439 SAAIQCYTRAIQINPTFAEAHS  460 (966)
T ss_pred             HHHHHHHHHHHhcCcHHHHHHh
Confidence            7788888888888887766443

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.76  E-value=2.2e-18  Score=171.69  Aligned_cols=165  Identities=21%  Similarity=0.231  Sum_probs=150.2

Q ss_pred             hccChhhhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHH
Q 014256           34 VSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYA  111 (428)
Q Consensus        34 ~~~~~~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~  111 (428)
                      .++++..|+..+++++ ..|+..+|..+|.++|.+.|+..++  ++++|++|..+|+++.|...|.++++..|. +.++.
T Consensus       315 ~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hada--m~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~n  392 (966)
T KOG4626|consen  315 LQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADA--MNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHN  392 (966)
T ss_pred             cCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHH--HHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhh
Confidence            5688888999999998 8899999999999999999998877  669999999999999999999999999999 88999


Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHH----------HHH
Q 014256          112 NRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK----------KQL  181 (428)
Q Consensus       112 nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~----------~~l  181 (428)
                      |+|.+|-++|++++|+.+|+.|++++|..+.++.++|.+|..+|+.++|++.|.+++.++|...++.          ++.
T Consensus       393 NLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni  472 (966)
T KOG4626|consen  393 NLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNI  472 (966)
T ss_pred             hHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCc
Confidence            9999999999999999999999999999999999999999999999999999999999999888873          456


Q ss_pred             HHHHHHHHHHHHhchhhhH
Q 014256          182 AEVKSLYEKEVFQKASKTL  200 (428)
Q Consensus       182 ~~a~~~~~~a~~~~~~~~~  200 (428)
                      .+|+..|+.++.++|..+.
T Consensus       473 ~~AI~sY~~aLklkPDfpd  491 (966)
T KOG4626|consen  473 PEAIQSYRTALKLKPDFPD  491 (966)
T ss_pred             HHHHHHHHHHHccCCCCch
Confidence            7889999999999988764

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.69  E-value=9.6e-16  Score=132.49  Aligned_cols=130  Identities=15%  Similarity=0.134  Sum_probs=121.5

Q ss_pred             hHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 014256           57 PVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALN  135 (428)
Q Consensus        57 Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~  135 (428)
                      -...|++++..+|+.     +..+|.+++..|+|++|+.+|.+++.++|. ..+|+++|.++..+|++++|+..|.+++.
T Consensus        12 ~~~~~~~al~~~p~~-----~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~   86 (144)
T PRK15359         12 PEDILKQLLSVDPET-----VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM   86 (144)
T ss_pred             HHHHHHHHHHcCHHH-----HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            467899999999863     457899999999999999999999999998 99999999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHH
Q 014256          136 LDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKE  191 (428)
Q Consensus       136 l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~~a  191 (428)
                      ++|.++.+++++|.++..+|++++|+..|.+++.+.|+++........+...++..
T Consensus        87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~~~  142 (144)
T PRK15359         87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVDTL  142 (144)
T ss_pred             cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999998888887776643

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.63  E-value=1.9e-15  Score=145.03  Aligned_cols=152  Identities=32%  Similarity=0.520  Sum_probs=134.7

Q ss_pred             hhhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchH----------HHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-
Q 014256           39 KSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDA----------TSEKELGNECFKQKKFKEAIDCYSRSIALSPT-  106 (428)
Q Consensus        39 ~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a----------~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-  106 (428)
                      ..++..-|.++ ..++.+.|+.+|+++|.++|....+          ..++..||..++.|+|..|.++|+.+|.++|+ 
T Consensus       203 ~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n  282 (486)
T KOG0550|consen  203 AEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSN  282 (486)
T ss_pred             hHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccc
Confidence            34554455555 8889999999999999999987543          23789999999999999999999999999997 


Q ss_pred             ----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 014256          107 ----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLA  182 (428)
Q Consensus       107 ----~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~  182 (428)
                          +.+|.|||.+...+|+..+|+.+|+.|+.+||.+.+++.++|.|+..+++|++|+++|++++++.-+ .+.+..+.
T Consensus       283 ~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~  361 (486)
T KOG0550|consen  283 KKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLR  361 (486)
T ss_pred             cchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHH
Confidence                6789999999999999999999999999999999999999999999999999999999999999877 77777777


Q ss_pred             HHHHHHHHH
Q 014256          183 EVKSLYEKE  191 (428)
Q Consensus       183 ~a~~~~~~a  191 (428)
                      +|...+++.
T Consensus       362 ~A~~aLkkS  370 (486)
T KOG0550|consen  362 EAQLALKKS  370 (486)
T ss_pred             HHHHHHHHh
Confidence            777766654

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.63  E-value=3.4e-15  Score=159.11  Aligned_cols=155  Identities=12%  Similarity=0.169  Sum_probs=124.9

Q ss_pred             hhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHH
Q 014256           40 SAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAY  117 (428)
Q Consensus        40 ~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~  117 (428)
                      .++..+|.++ ..|++++|+..|++++..+|.+..+  +..+|.++...|++++|+.+|.+++..+|+ +.+|+++|.++
T Consensus       332 ~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~--~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~  409 (615)
T TIGR00990       332 IALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQS--YIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLH  409 (615)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH--HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            3444455555 6788888888888888888876666  668888888888888888888888888887 88888888888


Q ss_pred             HHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH----------HHHHHHHHHH
Q 014256          118 LKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI----------KKQLAEVKSL  187 (428)
Q Consensus       118 ~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~----------~~~l~~a~~~  187 (428)
                      +.+|++++|+.+|++++.++|++..+++++|.++..+|++++|+..|++++.+.|+++.+          .+++.+|+..
T Consensus       410 ~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~  489 (615)
T TIGR00990       410 FIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEK  489 (615)
T ss_pred             HHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHH
Confidence            888888888888888888888888888888888888888888888888888888887765          3456667777


Q ss_pred             HHHHHHhch
Q 014256          188 YEKEVFQKA  196 (428)
Q Consensus       188 ~~~a~~~~~  196 (428)
                      |++++.++|
T Consensus       490 ~~~Al~l~p  498 (615)
T TIGR00990       490 FDTAIELEK  498 (615)
T ss_pred             HHHHHhcCC
Confidence            777776654

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.62  E-value=3.9e-15  Score=147.24  Aligned_cols=151  Identities=28%  Similarity=0.427  Sum_probs=133.2

Q ss_pred             hhhhhcCCCccc-cCCCCcchHHHHHhhhhcCCC--C----------------------chHHHHHHHHHHHHHhcCHHH
Q 014256           38 LKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEES--T----------------------PDATSEKELGNECFKQKKFKE   92 (428)
Q Consensus        38 ~~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~--~----------------------~~a~~~~~lg~~~~~~g~~~~   92 (428)
                      ...++.++|.+| +.++++.|+.+|.+++.....  .                      ..+...+..|+.+|+.|+|..
T Consensus       297 Iak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~  376 (539)
T KOG0548|consen  297 IAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPE  376 (539)
T ss_pred             HHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHH
Confidence            445667788888 889999999999998876433  0                      012225778999999999999


Q ss_pred             HHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 014256           93 AIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLE  171 (428)
Q Consensus        93 Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~  171 (428)
                      |+.+|+++|..+|+ +.+|.|||.||.+++.+..|+.+|+.+++++|++.++|+|-|.++..+.+|+.|.+.|.+++.++
T Consensus       377 Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d  456 (539)
T KOG0548|consen  377 AVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD  456 (539)
T ss_pred             HHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999 99999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHH
Q 014256          172 PQNQEIKKQLAEVKSLY  188 (428)
Q Consensus       172 P~~~~~~~~l~~a~~~~  188 (428)
                      |++.++...+.++....
T Consensus       457 p~~~e~~~~~~rc~~a~  473 (539)
T KOG0548|consen  457 PSNAEAIDGYRRCVEAQ  473 (539)
T ss_pred             chhHHHHHHHHHHHHHh
Confidence            99999887777766543

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.60  E-value=7.3e-15  Score=156.55  Aligned_cols=158  Identities=17%  Similarity=0.175  Sum_probs=141.5

Q ss_pred             cCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHh
Q 014256           43 KPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKL  120 (428)
Q Consensus        43 ~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~  120 (428)
                      ..++.++ ..|++++|+..|++++..+|.+..+  ++.+|.+++..|+|++|+.+|++++.++|+ ..++.++|.++..+
T Consensus       369 ~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~--~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~  446 (615)
T TIGR00990       369 IKRASMNLELGDPDKAEEDFDKALKLNSEDPDI--YYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKE  446 (615)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHC
Confidence            3344445 7899999999999999999998777  789999999999999999999999999998 88899999999999


Q ss_pred             cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH-----------------HHHHHH
Q 014256          121 RRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI-----------------KKQLAE  183 (428)
Q Consensus       121 ~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~-----------------~~~l~~  183 (428)
                      |++++|+..|.+++..+|.++.++..+|.++..+|++++|+..|++++.++|.+...                 .+++.+
T Consensus       447 g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~e  526 (615)
T TIGR00990       447 GSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIE  526 (615)
T ss_pred             CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHH
Confidence            999999999999999999999999999999999999999999999999999874221                 367888


Q ss_pred             HHHHHHHHHHhchhhhHhh
Q 014256          184 VKSLYEKEVFQKASKTLEK  202 (428)
Q Consensus       184 a~~~~~~a~~~~~~~~~~~  202 (428)
                      |...+++++.++|......
T Consensus       527 A~~~~~kAl~l~p~~~~a~  545 (615)
T TIGR00990       527 AENLCEKALIIDPECDIAV  545 (615)
T ss_pred             HHHHHHHHHhcCCCcHHHH
Confidence            9999999998887765433

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.60  E-value=8.4e-16  Score=155.28  Aligned_cols=167  Identities=24%  Similarity=0.251  Sum_probs=148.7

Q ss_pred             hhhcCCCccc-cCCCCcchHHHHHhhhhcCCCC----------------------------------chHHHHHHHHHHH
Q 014256           40 SAKKPSPSGN-SYSRNYDPVSHISSSLMNEEST----------------------------------PDATSEKELGNEC   84 (428)
Q Consensus        40 ~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~----------------------------------~~a~~~~~lg~~~   84 (428)
                      ..+..+|.+| .+++|++|..+|+.+-...|-.                                  ++.  |..+||||
T Consensus       354 wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPes--Wca~GNcf  431 (638)
T KOG1126|consen  354 WVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPES--WCALGNCF  431 (638)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHH--HHHhcchh
Confidence            4556777777 8888888888888877665532                                  223  88999999


Q ss_pred             HHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 014256           85 FKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIED  163 (428)
Q Consensus        85 ~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~  163 (428)
                      --+++++.|+.||++|++++|. +-+|.-+|.=+.....|+.|..+|..|+.++|.+..|||.+|.+|.++++++.|.-+
T Consensus       432 SLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~  511 (638)
T KOG1126|consen  432 SLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFH  511 (638)
T ss_pred             hhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHH
Confidence            9999999999999999999998 889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCcHHH----------HHHHHHHHHHHHHHHHhchhhhHhhhccccc
Q 014256          164 SEFALRLEPQNQEI----------KKQLAEVKSLYEKEVFQKASKTLEKYGKSGM  208 (428)
Q Consensus       164 ~~~al~l~P~~~~~----------~~~l~~a~~~~~~a~~~~~~~~~~~~~~~~~  208 (428)
                      |++|+.++|.+..+          .+..++|+..|++|+.++|.++..+..++..
T Consensus       512 fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~i  566 (638)
T KOG1126|consen  512 FQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASI  566 (638)
T ss_pred             HHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHH
Confidence            99999999998765          5778899999999999999999877766543

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.56  E-value=1.4e-13  Score=117.14  Aligned_cols=126  Identities=17%  Similarity=0.239  Sum_probs=115.5

Q ss_pred             HHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 014256           59 SHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLD  137 (428)
Q Consensus        59 ~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~  137 (428)
                      +.|.+++..+|.+..+  ...+|..++..|++++|+.+|++++..+|. ..+|.++|.++..+|++++|+..+.+++..+
T Consensus         4 ~~~~~~l~~~p~~~~~--~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~   81 (135)
T TIGR02552         4 ATLKDLLGLDSEQLEQ--IYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD   81 (135)
T ss_pred             hhHHHHHcCChhhHHH--HHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            4688999999987766  679999999999999999999999999998 8999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 014256          138 DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKS  186 (428)
Q Consensus       138 p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~  186 (428)
                      |+++..++.+|.++...|++++|+..|+++++++|++.........+..
T Consensus        82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  130 (135)
T TIGR02552        82 PDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAEA  130 (135)
T ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence            9999999999999999999999999999999999998876554444443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=99.56  E-value=2.9e-14  Score=133.94  Aligned_cols=97  Identities=23%  Similarity=0.257  Sum_probs=88.1

Q ss_pred             CCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhc
Q 014256           44 PSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLR  121 (428)
Q Consensus        44 ~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~  121 (428)
                      .-|+-| ++|.|++||.+|.+.+..+|.++..  +-+++.+|++.+.|..|...++.++.++.. ..+|..||.+-..+|
T Consensus       102 E~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~--~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg  179 (536)
T KOG4648|consen  102 ERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVY--HINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG  179 (536)
T ss_pred             HhhhhhhhccchhHHHHHhhhhhccCCCCccc--hhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence            344444 8999999999999999999988766  669999999999999999999999999987 889999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCCCHH
Q 014256          122 RFQEAEDDCTEALNLDDRYIK  142 (428)
Q Consensus       122 ~~~eA~~~~~~al~l~p~~~~  142 (428)
                      ...+|.++|+.++++.|.+..
T Consensus       180 ~~~EAKkD~E~vL~LEP~~~E  200 (536)
T KOG4648|consen  180 NNMEAKKDCETVLALEPKNIE  200 (536)
T ss_pred             hHHHHHHhHHHHHhhCcccHH
Confidence            999999999999999998754

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.55  E-value=1.6e-13  Score=124.95  Aligned_cols=127  Identities=16%  Similarity=0.153  Sum_probs=117.9

Q ss_pred             cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHH-HHhcC--HHH
Q 014256           50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAY-LKLRR--FQE  125 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~-~~~~~--~~e  125 (428)
                      ..++.++++..+++++..+|++..+  |..+|.+|...|++++|+.+|.+++.++|+ +.++.++|.++ ...|+  +++
T Consensus        51 ~~~~~~~~i~~l~~~L~~~P~~~~~--w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~  128 (198)
T PRK10370         51 SQQTPEAQLQALQDKIRANPQNSEQ--WALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQ  128 (198)
T ss_pred             CchhHHHHHHHHHHHHHHCCCCHHH--HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHH
Confidence            4577789999999999999998887  889999999999999999999999999998 99999999985 67787  599


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHH
Q 014256          126 AEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK  178 (428)
Q Consensus       126 A~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~  178 (428)
                      |...++++++++|+++.+++.+|.++..+|+|++|+..|+++++++|.+..-.
T Consensus       129 A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~  181 (198)
T PRK10370        129 TREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRT  181 (198)
T ss_pred             HHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHH
Confidence            99999999999999999999999999999999999999999999999766543

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.55  E-value=1.8e-14  Score=145.80  Aligned_cols=163  Identities=13%  Similarity=0.149  Sum_probs=144.3

Q ss_pred             cChhhhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHH
Q 014256           36 SSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANR  113 (428)
Q Consensus        36 ~~~~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nl  113 (428)
                      ++--+....+|++| -+++++.|+++|.+++.++|++..+  +-.+|.-+....+|+.|..+|+.|+..+|. ..+|+.+
T Consensus       418 ~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYa--yTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGl  495 (638)
T KOG1126|consen  418 PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYA--YTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGL  495 (638)
T ss_pred             CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchh--hhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhh
Confidence            34445778899999 8899999999999999999998877  559999999999999999999999999998 9999999


Q ss_pred             HHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH----------HHHHHH
Q 014256          114 AMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI----------KKQLAE  183 (428)
Q Consensus       114 a~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~----------~~~l~~  183 (428)
                      |++|+++++++.|+-.|.+|+.++|.+.......|..+.++|+.++|+..|++|+.++|.++-.          .+.+.+
T Consensus       496 G~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~e  575 (638)
T KOG1126|consen  496 GTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVE  575 (638)
T ss_pred             hhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHH
Confidence            9999999999999999999999999999999999999999999999999999999999998765          355667


Q ss_pred             HHHHHHHHHHhchhhhH
Q 014256          184 VKSLYEKEVFQKASKTL  200 (428)
Q Consensus       184 a~~~~~~a~~~~~~~~~  200 (428)
                      |...+++..+.-|....
T Consensus       576 al~~LEeLk~~vP~es~  592 (638)
T KOG1126|consen  576 ALQELEELKELVPQESS  592 (638)
T ss_pred             HHHHHHHHHHhCcchHH
Confidence            77777766665555443

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.53  E-value=1.8e-13  Score=119.95  Aligned_cols=106  Identities=37%  Similarity=0.618  Sum_probs=100.2

Q ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHH
Q 014256           73 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT------AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSR  146 (428)
Q Consensus        73 ~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~------~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~  146 (428)
                      .+..++..||-+|+.|+|++|...|..||.+.|.      ..+|.|+|.|+++++.++.|+.+|++||+++|++.+|+.|
T Consensus        94 kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~R  173 (271)
T KOG4234|consen   94 KADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALER  173 (271)
T ss_pred             HHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHH
Confidence            4555889999999999999999999999999986      6789999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHH
Q 014256          147 RATARKELGKLKESIEDSEFALRLEPQNQEIK  178 (428)
Q Consensus       147 lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~  178 (428)
                      +|.+|..+.+|++|+.+|++++.++|...++.
T Consensus       174 RAeayek~ek~eealeDyKki~E~dPs~~ear  205 (271)
T KOG4234|consen  174 RAEAYEKMEKYEEALEDYKKILESDPSRREAR  205 (271)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHhCcchHHHH
Confidence            99999999999999999999999999987664

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.51  E-value=2.8e-13  Score=130.99  Aligned_cols=118  Identities=35%  Similarity=0.501  Sum_probs=105.4

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHccCC-------c---------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 014256           74 ATSEKELGNECFKQKKFKEAIDCYSRSIALSP-------T---------AVAYANRAMAYLKLRRFQEAEDDCTEALNLD  137 (428)
Q Consensus        74 a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p-------~---------~~~~~nla~~~~~~~~~~eA~~~~~~al~l~  137 (428)
                      +...+..|+.||+.|+|..|+..|.+++..-.       .         ..++.|+|.||+++++|.+|+..|+++|.++
T Consensus       208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~  287 (397)
T KOG0543|consen  208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD  287 (397)
T ss_pred             HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence            44478999999999999999999999987532       1         2578999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHH
Q 014256          138 DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKE  191 (428)
Q Consensus       138 p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~~a  191 (428)
                      |.|++++||+|.++..+|.|+.|+.+|+++++++|+|..+..++..+.+.+++.
T Consensus       288 ~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~  341 (397)
T KOG0543|consen  288 PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREY  341 (397)
T ss_pred             CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999987777666655443

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.51  E-value=4.8e-13  Score=129.65  Aligned_cols=127  Identities=20%  Similarity=0.161  Sum_probs=116.0

Q ss_pred             cCCCCcchHHHHHhhhhcCCCC--chHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHH
Q 014256           50 SYSRNYDPVSHISSSLMNEEST--PDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEA  126 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~~--~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA  126 (428)
                      ..+..+.++..+.+++...+..  ..+..++.+|.+|...|++.+|+..|+++++++|+ +.+|+++|.++..+|++++|
T Consensus        38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A  117 (296)
T PRK11189         38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAA  117 (296)
T ss_pred             CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHH
Confidence            3456688999999999754422  23556899999999999999999999999999999 99999999999999999999


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q 014256          127 EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE  176 (428)
Q Consensus       127 ~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~  176 (428)
                      +..|.++++++|++..+++++|.++...|++++|+..|+++++++|+++.
T Consensus       118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~  167 (296)
T PRK11189        118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPY  167 (296)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence            99999999999999999999999999999999999999999999999873

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.49  E-value=6.9e-13  Score=131.66  Aligned_cols=114  Identities=32%  Similarity=0.457  Sum_probs=108.4

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 014256           77 EKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG  155 (428)
Q Consensus        77 ~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg  155 (428)
                      +...|+.++..|+|++|+.+|.+++.++|+ +.+|+++|.+|+.+|+|++|+.++.+++.++|.++.+|+++|.++..+|
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg   84 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE   84 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence            668899999999999999999999999999 9999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHH
Q 014256          156 KLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEK  190 (428)
Q Consensus       156 ~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~~  190 (428)
                      +|++|+..|++++.++|++..+...+..+...+..
T Consensus        85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~  119 (356)
T PLN03088         85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAE  119 (356)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence            99999999999999999999998888887776643

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.49  E-value=1.1e-12  Score=112.50  Aligned_cols=114  Identities=10%  Similarity=-0.016  Sum_probs=103.5

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 014256           76 SEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKEL  154 (428)
Q Consensus        76 ~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~l  154 (428)
                      ..+.+|..++..|++++|...|+-+..++|. ...|+++|.|+..+|+|++|+..|.+|+.++|+++.+++++|.|+..+
T Consensus        37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~l  116 (157)
T PRK15363         37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLAC  116 (157)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHc
Confidence            3789999999999999999999999999999 999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHH
Q 014256          155 GKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYE  189 (428)
Q Consensus       155 g~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~  189 (428)
                      |+.+.|...|+.++.+...+++......+|..++.
T Consensus       117 G~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~~~L~  151 (157)
T PRK15363        117 DNVCYAIKALKAVVRICGEVSEHQILRQRAEKMLQ  151 (157)
T ss_pred             CCHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHH
Confidence            99999999999999998655555444455555543

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.48  E-value=8.4e-13  Score=120.96  Aligned_cols=153  Identities=13%  Similarity=0.138  Sum_probs=121.8

Q ss_pred             hhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHH
Q 014256           41 AKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYL  118 (428)
Q Consensus        41 a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~  118 (428)
                      +...++..| ..|++++|+..|++++..+|.+..+  +..+|.++...|++++|+..|.+++...|. ..++.++|.++.
T Consensus        33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~--~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  110 (234)
T TIGR02521        33 IRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLA--YLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC  110 (234)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHH--HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence            344455556 7888999999999998888877655  668899999999999999999999988887 778888999999


Q ss_pred             HhcCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHH----------HHHHHHHH
Q 014256          119 KLRRFQEAEDDCTEALNLD--DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK----------KQLAEVKS  186 (428)
Q Consensus       119 ~~~~~~eA~~~~~~al~l~--p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~----------~~l~~a~~  186 (428)
                      ..|++++|+..|.+++...  +.....++.+|.++...|++++|...+.+++..+|++....          +++.+|..
T Consensus       111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  190 (234)
T TIGR02521       111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARA  190 (234)
T ss_pred             HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHH
Confidence            9999999999999988753  45667888889999999999999999999999988876652          34555555


Q ss_pred             HHHHHHHhc
Q 014256          187 LYEKEVFQK  195 (428)
Q Consensus       187 ~~~~a~~~~  195 (428)
                      .+++++...
T Consensus       191 ~~~~~~~~~  199 (234)
T TIGR02521       191 YLERYQQTY  199 (234)
T ss_pred             HHHHHHHhC
Confidence            565555543

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.48  E-value=7.7e-13  Score=145.68  Aligned_cols=147  Identities=9%  Similarity=-0.002  Sum_probs=127.8

Q ss_pred             cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHH
Q 014256           50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  128 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~  128 (428)
                      ..|++++|+..|++++..+|+ ..+  +.++|.++.+.|++++|+.+|.+++.++|+ +.+++++|.++...|++++|+.
T Consensus       588 ~~Gr~~eAl~~~~~AL~l~P~-~~a--~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~  664 (987)
T PRK09782        588 IPGQPELALNDLTRSLNIAPS-ANA--YVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSRE  664 (987)
T ss_pred             hCCCHHHHHHHHHHHHHhCCC-HHH--HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            349999999999999999985 444  779999999999999999999999999998 8899999999999999999999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH----------HHHHHHHHHHHHHHHHhchhh
Q 014256          129 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI----------KKQLAEVKSLYEKEVFQKASK  198 (428)
Q Consensus       129 ~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~----------~~~l~~a~~~~~~a~~~~~~~  198 (428)
                      .|.+++.++|+++.+++++|.++..+|++++|+..|++++.++|++..+          ..++..+.+.+.++...++..
T Consensus       665 ~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~  744 (987)
T PRK09782        665 MLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDS  744 (987)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccc
Confidence            9999999999999999999999999999999999999999999988665          344666666666666666555


Q ss_pred             h
Q 014256          199 T  199 (428)
Q Consensus       199 ~  199 (428)
                      .
T Consensus       745 ~  745 (987)
T PRK09782        745 S  745 (987)
T ss_pred             h
Confidence            4

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.47  E-value=9.2e-13  Score=128.32  Aligned_cols=151  Identities=21%  Similarity=0.173  Sum_probs=134.8

Q ss_pred             hhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHH
Q 014256           41 AKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYL  118 (428)
Q Consensus        41 a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~  118 (428)
                      ....+|+.| -.++.++|+.+|++++++||....+  |-.+|.-|+..++-..|+++|++|++++|. ..+|+.+|++|-
T Consensus       332 TCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~a--WTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYe  409 (559)
T KOG1155|consen  332 TCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSA--WTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYE  409 (559)
T ss_pred             ceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHH--HHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHH
Confidence            336677778 7788999999999999999998888  669999999999999999999999999998 999999999999


Q ss_pred             HhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHH----------HHHHHHHHHH
Q 014256          119 KLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK----------KQLAEVKSLY  188 (428)
Q Consensus       119 ~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~----------~~l~~a~~~~  188 (428)
                      .++...=|+-.|.+|+.+.|.++..|.-+|.||..+++.++|+..|.+++...-.+..+.          +.+.+|..+|
T Consensus       410 im~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~y  489 (559)
T KOG1155|consen  410 IMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYY  489 (559)
T ss_pred             HhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999887665553          4455566666


Q ss_pred             HHHHH
Q 014256          189 EKEVF  193 (428)
Q Consensus       189 ~~a~~  193 (428)
                      .+.+.
T Consensus       490 ek~v~  494 (559)
T KOG1155|consen  490 EKYVE  494 (559)
T ss_pred             HHHHH
Confidence            65554

>PRK12370 invasion protein regulator; Provisional

Probab=99.47  E-value=7.8e-13  Score=139.08  Aligned_cols=143  Identities=10%  Similarity=0.002  Sum_probs=126.1

Q ss_pred             CCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHh---------cCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHh
Q 014256           51 YSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQ---------KKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKL  120 (428)
Q Consensus        51 ~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~---------g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~  120 (428)
                      .+++++|+.+|++++..+|++..+  +..+|.++...         +++++|+..++++++++|+ +.+|..+|.++...
T Consensus       274 ~~~~~~A~~~~~~Al~ldP~~a~a--~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~  351 (553)
T PRK12370        274 PYSLQQALKLLTQCVNMSPNSIAP--YCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIH  351 (553)
T ss_pred             HHHHHHHHHHHHHHHhcCCccHHH--HHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Confidence            355789999999999999998776  66888877644         3489999999999999999 99999999999999


Q ss_pred             cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH----------HHHHHHHHHHHHH
Q 014256          121 RRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI----------KKQLAEVKSLYEK  190 (428)
Q Consensus       121 ~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~----------~~~l~~a~~~~~~  190 (428)
                      |++++|+..|++++.++|+++.+++.+|.++...|++++|+..++++++++|.+...          .+.+++|...+.+
T Consensus       352 g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~  431 (553)
T PRK12370        352 SEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDE  431 (553)
T ss_pred             cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999997644          2445777777777


Q ss_pred             HHHhc
Q 014256          191 EVFQK  195 (428)
Q Consensus       191 a~~~~  195 (428)
                      ++...
T Consensus       432 ~l~~~  436 (553)
T PRK12370        432 LRSQH  436 (553)
T ss_pred             HHHhc
Confidence            76654

>PLN02789 farnesyltranstransferase

Probab=99.46  E-value=1e-12  Score=128.02  Aligned_cols=169  Identities=12%  Similarity=0.021  Sum_probs=144.2

Q ss_pred             cChhhhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhc-CHHHHHHHHHHHHccCCc-HHHHHH
Q 014256           36 SSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQK-KFKEAIDCYSRSIALSPT-AVAYAN  112 (428)
Q Consensus        36 ~~~~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g-~~~~Ai~~y~~al~~~p~-~~~~~n  112 (428)
                      ++|.+++..+...+ ..+.+++|+..+.+++.++|.+..+  |..+|.++...| ++++|+.++.+++..+|+ ..+|++
T Consensus        34 ~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~yta--W~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~  111 (320)
T PLN02789         34 PEFREAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTV--WHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHH  111 (320)
T ss_pred             HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHH--HHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHH
Confidence            45556665555556 6788999999999999999999888  889999999998 689999999999999999 889999


Q ss_pred             HHHHHHHhcCH--HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHH---------
Q 014256          113 RAMAYLKLRRF--QEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQL---------  181 (428)
Q Consensus       113 la~~~~~~~~~--~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l---------  181 (428)
                      ++.++.++|+.  ++++..+++++.++|+|..+|..+|.++..+|+|++|++.+.++++++|.|..++...         
T Consensus       112 R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~  191 (320)
T PLN02789        112 RRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPL  191 (320)
T ss_pred             HHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccc
Confidence            99999999874  7889999999999999999999999999999999999999999999999998874332         


Q ss_pred             --------HHHHHHHHHHHHhchhhhHhhhccc
Q 014256          182 --------AEVKSLYEKEVFQKASKTLEKYGKS  206 (428)
Q Consensus       182 --------~~a~~~~~~a~~~~~~~~~~~~~~~  206 (428)
                              +....+..++|..+|.+...+....
T Consensus       192 l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~  224 (320)
T PLN02789        192 LGGLEAMRDSELKYTIDAILANPRNESPWRYLR  224 (320)
T ss_pred             cccccccHHHHHHHHHHHHHhCCCCcCHHHHHH
Confidence                    2345556677877877766554443

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.45  E-value=2.7e-12  Score=117.62  Aligned_cols=140  Identities=18%  Similarity=0.091  Sum_probs=124.4

Q ss_pred             ChhhhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCC--c-HHHHHH
Q 014256           37 SLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSP--T-AVAYAN  112 (428)
Q Consensus        37 ~~~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p--~-~~~~~n  112 (428)
                      +...+...++..| ..|++++|+..|.+++...|.+..+  +..+|.+++..|++++|+..|.+++...+  . ...+.+
T Consensus        63 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  140 (234)
T TIGR02521        63 DDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDV--LNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLEN  140 (234)
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH--HHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHH
Confidence            3334555566666 8899999999999999999987766  77999999999999999999999998643  3 678999


Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHH
Q 014256          113 RAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK  178 (428)
Q Consensus       113 la~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~  178 (428)
                      +|.++...|++++|...|.+++..+|.+..++..+|.++...|++++|...+++++.+.|.+....
T Consensus       141 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  206 (234)
T TIGR02521       141 AGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESL  206 (234)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence            999999999999999999999999999999999999999999999999999999999988776654

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.45  E-value=1e-12  Score=144.64  Aligned_cols=149  Identities=17%  Similarity=0.126  Sum_probs=135.0

Q ss_pred             cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCcHHHHHHHHHHHHHhcCHHHHHHH
Q 014256           50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDD  129 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~~~~~~nla~~~~~~~~~~eA~~~  129 (428)
                      ..|++++|+.+|++++..+|.....  +..++..+...|++++|+.+|.++++++|++.+|.++|.++.++|++++|+..
T Consensus       554 ~~Gd~~eA~~~l~qAL~l~P~~~~l--~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~  631 (987)
T PRK09782        554 AAGNGAARDRWLQQAEQRGLGDNAL--YWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSD  631 (987)
T ss_pred             HCCCHHHHHHHHHHHHhcCCccHHH--HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            7889999999999999998876544  44666667777999999999999999999988899999999999999999999


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH----------HHHHHHHHHHHHHHHHhchhhh
Q 014256          130 CTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI----------KKQLAEVKSLYEKEVFQKASKT  199 (428)
Q Consensus       130 ~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~----------~~~l~~a~~~~~~a~~~~~~~~  199 (428)
                      |.+++.++|+++.++.++|.++...|++++|+..|+++++++|+++.+          .+++++|...|++++..+|...
T Consensus       632 l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a  711 (987)
T PRK09782        632 LRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQA  711 (987)
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCc
Confidence            999999999999999999999999999999999999999999999887          3567789999999999998765


Q ss_pred             H
Q 014256          200 L  200 (428)
Q Consensus       200 ~  200 (428)
                      .
T Consensus       712 ~  712 (987)
T PRK09782        712 L  712 (987)
T ss_pred             h
Confidence            4

>PRK12370 invasion protein regulator; Provisional

Probab=99.44  E-value=1.8e-12  Score=136.25  Aligned_cols=144  Identities=14%  Similarity=0.037  Sum_probs=125.7

Q ss_pred             CCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHH
Q 014256           51 YSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDD  129 (428)
Q Consensus        51 ~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~  129 (428)
                      .+++++|+..+++++..+|++..+  +..+|.++...|++++|+.+|+++++++|+ +.+|+++|.++..+|++++|+..
T Consensus       317 ~~~~~~A~~~~~~Al~ldP~~~~a--~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~  394 (553)
T PRK12370        317 QNAMIKAKEHAIKATELDHNNPQA--LGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQT  394 (553)
T ss_pred             chHHHHHHHHHHHHHhcCCCCHHH--HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            355789999999999999998877  779999999999999999999999999999 88999999999999999999999


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCcHHHH----------HHHHHHHHHHHHHHHhch
Q 014256          130 CTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLE-PQNQEIK----------KQLAEVKSLYEKEVFQKA  196 (428)
Q Consensus       130 ~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~-P~~~~~~----------~~l~~a~~~~~~a~~~~~  196 (428)
                      ++++++++|.++.+++.++.++...|++++|+..+++++... |+++.+.          +++++|...+.+.....|
T Consensus       395 ~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~  472 (553)
T PRK12370        395 INECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEI  472 (553)
T ss_pred             HHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc
Confidence            999999999999888788888888999999999999999875 6676642          445666666665544443

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.44  E-value=9.8e-13  Score=113.66  Aligned_cols=108  Identities=13%  Similarity=0.082  Sum_probs=100.8

Q ss_pred             Cccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCH
Q 014256           46 PSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRF  123 (428)
Q Consensus        46 ~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~  123 (428)
                      |..+ ..|++++|+.+|.+++..+|.+..+  +..+|.++...|+|++|+.+|.+++.++|+ +.+++++|.|+..+|++
T Consensus        31 g~~~~~~g~~~~A~~~~~~al~~~P~~~~a--~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~  108 (144)
T PRK15359         31 GYASWQEGDYSRAVIDFSWLVMAQPWSWRA--HIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEP  108 (144)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCcHHH--HHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCH
Confidence            4444 8899999999999999999998877  789999999999999999999999999998 99999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 014256          124 QEAEDDCTEALNLDDRYIKAYSRRATARKELG  155 (428)
Q Consensus       124 ~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg  155 (428)
                      ++|+..|.+++.++|+++.++.++|.+...++
T Consensus       109 ~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~  140 (144)
T PRK15359        109 GLAREAFQTAIKMSYADASWSEIRQNAQIMVD  140 (144)
T ss_pred             HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence            99999999999999999999999998876553

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.43  E-value=1.7e-12  Score=138.98  Aligned_cols=149  Identities=13%  Similarity=0.135  Sum_probs=129.6

Q ss_pred             cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHH----HHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHH
Q 014256           50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKE----AIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQ  124 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~----Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~  124 (428)
                      ..|++++|+..|.+++..+|.+..+  +..+|..+...|++++    |+..|++++.++|+ +.++.++|.++...|+++
T Consensus       224 ~~g~~~eA~~~~~~al~~~p~~~~~--~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~  301 (656)
T PRK15174        224 AVGKYQEAIQTGESALARGLDGAAL--RRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNE  301 (656)
T ss_pred             HCCCHHHHHHHHHHHHhcCCCCHHH--HHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHH
Confidence            6788999999999999998887666  6789999999999985    79999999999998 888999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH----------HHHHHHHHHHHHHHHHh
Q 014256          125 EAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI----------KKQLAEVKSLYEKEVFQ  194 (428)
Q Consensus       125 eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~----------~~~l~~a~~~~~~a~~~  194 (428)
                      +|+..+++++.++|+++.++..+|.++..+|++++|+..|++++..+|++...          .++.++|...|++++..
T Consensus       302 eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~  381 (656)
T PRK15174        302 KAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA  381 (656)
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999987543          34677888889888888


Q ss_pred             chhhhH
Q 014256          195 KASKTL  200 (428)
Q Consensus       195 ~~~~~~  200 (428)
                      +|....
T Consensus       382 ~P~~~~  387 (656)
T PRK15174        382 RASHLP  387 (656)
T ss_pred             Chhhch
Confidence            877653

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.43  E-value=9.8e-13  Score=118.10  Aligned_cols=135  Identities=17%  Similarity=0.100  Sum_probs=120.3

Q ss_pred             hhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHH
Q 014256           41 AKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYL  118 (428)
Q Consensus        41 a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~  118 (428)
                      +.-.++..| ..|++..|...++++|+.+|+...+  |..++..|.+.|+.+.|-+.|++++.++|+ ..+.+|.|..++
T Consensus        37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a--~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC  114 (250)
T COG3063          37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLA--HLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC  114 (250)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHH--HHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence            334555556 8899999999999999999998888  669999999999999999999999999998 899999999999


Q ss_pred             HhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH
Q 014256          119 KLRRFQEAEDDCTEALNL--DDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI  177 (428)
Q Consensus       119 ~~~~~~eA~~~~~~al~l--~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~  177 (428)
                      .+|+|++|...|++|+..  .+.-+..+-|+|.|-.+.|+++.|..+|+++++++|+++..
T Consensus       115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~  175 (250)
T COG3063         115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPA  175 (250)
T ss_pred             hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChH
Confidence            999999999999999864  24557889999999999999999999999999999998776

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.43  E-value=2.3e-12  Score=126.23  Aligned_cols=157  Identities=16%  Similarity=0.172  Sum_probs=144.6

Q ss_pred             hhhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHH
Q 014256           39 KSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMA  116 (428)
Q Consensus        39 ~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~  116 (428)
                      ..++..-|..+ -.|++-+|...|+.++.++|.+...  +..+|..|....+-++-...|+++..++|. +.+|+.||..
T Consensus       326 A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~l--yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm  403 (606)
T KOG0547|consen  326 AEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSL--YIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQM  403 (606)
T ss_pred             HHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchH--HHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHH
Confidence            34555555555 7899999999999999999988776  668999999999999999999999999998 9999999999


Q ss_pred             HHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH----------HHHHHHHHH
Q 014256          117 YLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI----------KKQLAEVKS  186 (428)
Q Consensus       117 ~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~----------~~~l~~a~~  186 (428)
                      ++-+++|++|+.+|++++.++|.++.+|..++.+.+++++++++...|+.+.+..|+.+++          ++++..|.+
T Consensus       404 ~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k  483 (606)
T KOG0547|consen  404 RFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVK  483 (606)
T ss_pred             HHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999998887          678889999


Q ss_pred             HHHHHHHhchh
Q 014256          187 LYEKEVFQKAS  197 (428)
Q Consensus       187 ~~~~a~~~~~~  197 (428)
                      .|++++.+.|.
T Consensus       484 ~YD~ai~LE~~  494 (606)
T KOG0547|consen  484 QYDKAIELEPR  494 (606)
T ss_pred             HHHHHHhhccc
Confidence            99999998866

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.42  E-value=1.2e-12  Score=128.19  Aligned_cols=163  Identities=17%  Similarity=0.217  Sum_probs=147.6

Q ss_pred             cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHH
Q 014256           50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  128 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~  128 (428)
                      ..++..+-...|+++..++|.++..  ++.+|..++-.++|++|+..|++++.++|. ...|..+|.+.++++++++++.
T Consensus       372 d~~~~~~~~~~F~~A~~ldp~n~dv--YyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~  449 (606)
T KOG0547|consen  372 DENQSEKMWKDFNKAEDLDPENPDV--YYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMK  449 (606)
T ss_pred             hhhccHHHHHHHHHHHhcCCCCCch--hHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            6788889999999999999999988  889999999999999999999999999999 8889999999999999999999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------cHHH-----------HHHHHHHHHHHHHH
Q 014256          129 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQ------NQEI-----------KKQLAEVKSLYEKE  191 (428)
Q Consensus       129 ~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~------~~~~-----------~~~l~~a~~~~~~a  191 (428)
                      .|+.+++..|+.+.+|...|.++...++|+.|+..|.+++.|+|.      +...           .+.+..|..++.++
T Consensus       450 ~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA  529 (606)
T KOG0547|consen  450 TFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKA  529 (606)
T ss_pred             HHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999998      3221           57889999999999


Q ss_pred             HHhchhhhHhhhccccccccCcc
Q 014256          192 VFQKASKTLEKYGKSGMKVNGHE  214 (428)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~  214 (428)
                      ++++|.....+.+.+....+...
T Consensus       530 ~e~Dpkce~A~~tlaq~~lQ~~~  552 (606)
T KOG0547|consen  530 IELDPKCEQAYETLAQFELQRGK  552 (606)
T ss_pred             HccCchHHHHHHHHHHHHHHHhh
Confidence            99999887776666544444333

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.42  E-value=2.6e-12  Score=124.56  Aligned_cols=128  Identities=19%  Similarity=0.098  Sum_probs=110.1

Q ss_pred             hhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHH
Q 014256           40 SAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAY  117 (428)
Q Consensus        40 ~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~  117 (428)
                      ..+...|..| ..|++++|+..|.+++..+|++..+  +..+|..+...|+|++|+..|.++++++|+ ..+|.++|.++
T Consensus        65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a--~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l  142 (296)
T PRK11189         65 QLHYERGVLYDSLGLRALARNDFSQALALRPDMADA--YNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIAL  142 (296)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHH--HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            4455556666 8899999999999999999998877  889999999999999999999999999999 88999999999


Q ss_pred             HHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 014256          118 LKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRL  170 (428)
Q Consensus       118 ~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l  170 (428)
                      ...|++++|+.+|++++.++|+++.... ........+++++|+..|.+.+..
T Consensus       143 ~~~g~~~eA~~~~~~al~~~P~~~~~~~-~~~l~~~~~~~~~A~~~l~~~~~~  194 (296)
T PRK11189        143 YYGGRYELAQDDLLAFYQDDPNDPYRAL-WLYLAESKLDPKQAKENLKQRYEK  194 (296)
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHccCCHHHHHHHHHHHHhh
Confidence            9999999999999999999999974222 122344577899999999776654

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.40  E-value=6.1e-12  Score=122.68  Aligned_cols=136  Identities=19%  Similarity=0.133  Sum_probs=129.4

Q ss_pred             hccChhhhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHH
Q 014256           34 VSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYA  111 (428)
Q Consensus        34 ~~~~~~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~  111 (428)
                      .++++..+...+|.-| .+++...|+..|++++.++|.+..+  |+.+|+.|.-.+-..=|+-+|++|+...|+ ...|.
T Consensus       359 LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRA--WYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~  436 (559)
T KOG1155|consen  359 LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRA--WYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWV  436 (559)
T ss_pred             cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHH--HhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHH
Confidence            5677888888999999 8999999999999999999998888  999999999999999999999999999999 99999


Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 014256          112 NRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLE  171 (428)
Q Consensus       112 nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~  171 (428)
                      .+|.||.++++.++|+.+|.+|+.....+..++.++|.+|.+++++++|...|++.+...
T Consensus       437 aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~  496 (559)
T KOG1155|consen  437 ALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVS  496 (559)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999843

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.38  E-value=7e-12  Score=134.24  Aligned_cols=151  Identities=14%  Similarity=0.092  Sum_probs=134.8

Q ss_pred             hhcCCCccc-cCCCCcc----hHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHH
Q 014256           41 AKKPSPSGN-SYSRNYD----PVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRA  114 (428)
Q Consensus        41 a~~~~~~~y-~~g~~~~----Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla  114 (428)
                      +...+|..| ..|++++    |+..|++++..+|++..+  +..+|.++...|++++|+.+|++++.++|+ +.++.++|
T Consensus       248 ~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a--~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La  325 (656)
T PRK15174        248 LRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRI--VTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYA  325 (656)
T ss_pred             HHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHH--HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            334455556 7899986    899999999999997766  779999999999999999999999999999 88999999


Q ss_pred             HHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHh
Q 014256          115 MAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQ  194 (428)
Q Consensus       115 ~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~~a~~~  194 (428)
                      .+|...|++++|+..|.+++..+|.+..++..+|.++..+|++++|+..|+++++++|++.  ...+.+|...|.+++..
T Consensus       326 ~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~--~~~~~ea~~~~~~~~~~  403 (656)
T PRK15174        326 RALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL--PQSFEEGLLALDGQISA  403 (656)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc--hhhHHHHHHHHHHHHHh
Confidence            9999999999999999999999999998888899999999999999999999999999875  35566888888887765


Q ss_pred             c
Q 014256          195 K  195 (428)
Q Consensus       195 ~  195 (428)
                      -
T Consensus       404 ~  404 (656)
T PRK15174        404 V  404 (656)
T ss_pred             c
Confidence            4

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.36  E-value=1e-11  Score=111.55  Aligned_cols=138  Identities=20%  Similarity=0.137  Sum_probs=122.2

Q ss_pred             ChhhhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc----HHHHH
Q 014256           37 SLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYA  111 (428)
Q Consensus        37 ~~~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~  111 (428)
                      ++..+...++..| ..|+.+.|-+.|++++.++|++.++  +++.|..++.+|+|++|...|.+++. +|.    +..|-
T Consensus        67 s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdV--LNNYG~FLC~qg~~~eA~q~F~~Al~-~P~Y~~~s~t~e  143 (250)
T COG3063          67 SYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDV--LNNYGAFLCAQGRPEEAMQQFERALA-DPAYGEPSDTLE  143 (250)
T ss_pred             ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccch--hhhhhHHHHhCCChHHHHHHHHHHHh-CCCCCCcchhhh
Confidence            3333334444446 8999999999999999999998888  88999999999999999999999998 444    78999


Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH
Q 014256          112 NRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI  177 (428)
Q Consensus       112 nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~  177 (428)
                      |+|.|.+++|+++.|...+++++.++|+++.+...++..++..|+|..|...++....--+-..+.
T Consensus       144 N~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~s  209 (250)
T COG3063         144 NLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAES  209 (250)
T ss_pred             hhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHH
Confidence            999999999999999999999999999999999999999999999999999999988777655544

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.35  E-value=1.1e-11  Score=140.98  Aligned_cols=130  Identities=16%  Similarity=0.169  Sum_probs=118.1

Q ss_pred             Cccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-H--H------------H
Q 014256           46 PSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-A--V------------A  109 (428)
Q Consensus        46 ~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~--~------------~  109 (428)
                      |..+ ..|++++|+..|++++..+|.+..+  +..+|.+++..|++++|+.+|+++++.+|+ .  .            .
T Consensus       276 G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a--~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~  353 (1157)
T PRK11447        276 GLAAVDSGQGGKAIPELQQAVRANPKDSEA--LGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL  353 (1157)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence            4445 7899999999999999999998777  779999999999999999999999999986 2  1            1


Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH
Q 014256          110 YANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI  177 (428)
Q Consensus       110 ~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~  177 (428)
                      ...+|.+++..|++++|+..|.+++.++|+++.+++.+|.++...|++++|+..|+++++++|++..+
T Consensus       354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a  421 (1157)
T PRK11447        354 LIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNA  421 (1157)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence            23568899999999999999999999999999999999999999999999999999999999998765

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.34  E-value=1.5e-11  Score=139.91  Aligned_cols=166  Identities=16%  Similarity=0.149  Sum_probs=137.9

Q ss_pred             cChhhhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHH------------HHHHHHHHHHHhcCHHHHHHHHHHHHc
Q 014256           36 SSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDAT------------SEKELGNECFKQKKFKEAIDCYSRSIA  102 (428)
Q Consensus        36 ~~~~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~------------~~~~lg~~~~~~g~~~~Ai~~y~~al~  102 (428)
                      ++...++..+|.+| ..|++++|+.+|++++..+|.+....            ....+|.++...|++++|+.+|++++.
T Consensus       300 P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~  379 (1157)
T PRK11447        300 PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQ  379 (1157)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            33344445555566 89999999999999999998765321            234568899999999999999999999


Q ss_pred             cCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHH-------------------------------
Q 014256          103 LSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATA-------------------------------  150 (428)
Q Consensus       103 ~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~-------------------------------  150 (428)
                      ++|+ ..++.++|.++..+|++++|+..|++++.++|.+..++..++.+                               
T Consensus       380 ~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l  459 (1157)
T PRK11447        380 VDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSL  459 (1157)
T ss_pred             hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence            9998 88999999999999999999999999999999998776655544                               


Q ss_pred             -----------HHHcCCHHHHHHHHHHHHhhCCCcHHH----------HHHHHHHHHHHHHHHHhchhhhHh
Q 014256          151 -----------RKELGKLKESIEDSEFALRLEPQNQEI----------KKQLAEVKSLYEKEVFQKASKTLE  201 (428)
Q Consensus       151 -----------~~~lg~~~eA~~~~~~al~l~P~~~~~----------~~~l~~a~~~~~~a~~~~~~~~~~  201 (428)
                                 +...|++++|+..|+++++++|+++.+          .+++++|...+++++..+|.++..
T Consensus       460 ~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~  531 (1157)
T PRK11447        460 QNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQ  531 (1157)
T ss_pred             hhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Confidence                       446799999999999999999998765          356788889999998888876653

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.32  E-value=9.2e-12  Score=123.61  Aligned_cols=109  Identities=36%  Similarity=0.543  Sum_probs=105.7

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 014256           77 EKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG  155 (428)
Q Consensus        77 ~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg  155 (428)
                      ++..||..+..|+|+.|+.+|+.+|.++|. ...|.|+..||..+|+|++|+.+..+++++.|+.+++|.+.|.++..+|
T Consensus         5 ~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg   84 (539)
T KOG0548|consen    5 LKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLG   84 (539)
T ss_pred             HHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcc
Confidence            678999999999999999999999999998 8999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 014256          156 KLKESIEDSEFALRLEPQNQEIKKQLAEVK  185 (428)
Q Consensus       156 ~~~eA~~~~~~al~l~P~~~~~~~~l~~a~  185 (428)
                      +|++|+..|.+.|+.+|+|..+...+.+|.
T Consensus        85 ~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~  114 (539)
T KOG0548|consen   85 DYEEAILAYSEGLEKDPSNKQLKTGLAQAY  114 (539)
T ss_pred             cHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence            999999999999999999999988888876

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.31  E-value=3.4e-11  Score=120.78  Aligned_cols=154  Identities=16%  Similarity=0.068  Sum_probs=89.6

Q ss_pred             hcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc------HHHHHHHH
Q 014256           42 KKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT------AVAYANRA  114 (428)
Q Consensus        42 ~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~------~~~~~nla  114 (428)
                      +..++..| ..|++++|+..|.+++..+|....+  +..++.++...|++++|+..|.+++...|.      ...+.++|
T Consensus       110 ~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la  187 (389)
T PRK11788        110 LQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGA--LQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELA  187 (389)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHH--HHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence            34445555 5566666666666666655544433  446666666666666666666666665543      12345566


Q ss_pred             HHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-H----------HHHHHH
Q 014256          115 MAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE-I----------KKQLAE  183 (428)
Q Consensus       115 ~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~-~----------~~~l~~  183 (428)
                      .++...|++++|+..|.+++..+|++..+++.+|.++...|++++|+..|++++..+|.+.. +          .+++++
T Consensus       188 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~  267 (389)
T PRK11788        188 QQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAE  267 (389)
T ss_pred             HHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHH
Confidence            66666666666666666666666666666666666666666666666666666666555421 1          234555


Q ss_pred             HHHHHHHHHHhchh
Q 014256          184 VKSLYEKEVFQKAS  197 (428)
Q Consensus       184 a~~~~~~a~~~~~~  197 (428)
                      |...+++++...|.
T Consensus       268 A~~~l~~~~~~~p~  281 (389)
T PRK11788        268 GLEFLRRALEEYPG  281 (389)
T ss_pred             HHHHHHHHHHhCCC
Confidence            55555555555543

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.30  E-value=3.3e-11  Score=120.88  Aligned_cols=163  Identities=15%  Similarity=0.066  Sum_probs=132.6

Q ss_pred             cChhhhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCc--hHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHH
Q 014256           36 SSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTP--DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYA  111 (428)
Q Consensus        36 ~~~~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~--~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~  111 (428)
                      ++...+...++..| ..|++++|+..+++++...+...  ....+..+|.+|...|++++|+.+|.++++.+|. ..++.
T Consensus        66 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~  145 (389)
T PRK11788         66 PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQ  145 (389)
T ss_pred             cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHH
Confidence            34445666777777 88999999999999888643221  2344778999999999999999999999998887 77889


Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH---------
Q 014256          112 NRAMAYLKLRRFQEAEDDCTEALNLDDRYI-----KAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI---------  177 (428)
Q Consensus       112 nla~~~~~~~~~~eA~~~~~~al~l~p~~~-----~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~---------  177 (428)
                      .++.++...|++++|+..+.+++..+|.+.     ..+..+|.++...|++++|+..|+++++++|++..+         
T Consensus       146 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  225 (389)
T PRK11788        146 QLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLAL  225 (389)
T ss_pred             HHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHH
Confidence            999999999999999999999998887653     356778999999999999999999999999887654         


Q ss_pred             -HHHHHHHHHHHHHHHHhchhh
Q 014256          178 -KKQLAEVKSLYEKEVFQKASK  198 (428)
Q Consensus       178 -~~~l~~a~~~~~~a~~~~~~~  198 (428)
                       .+++.+|...+++++..+|..
T Consensus       226 ~~g~~~~A~~~~~~~~~~~p~~  247 (389)
T PRK11788        226 AQGDYAAAIEALERVEEQDPEY  247 (389)
T ss_pred             HCCCHHHHHHHHHHHHHHChhh
Confidence             356788888888888877654

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.29  E-value=4.3e-11  Score=111.78  Aligned_cols=134  Identities=16%  Similarity=0.111  Sum_probs=114.7

Q ss_pred             hcCCCccc-cCCCCcchHHHHHhhhhcCCCCch-HHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc----HHHHHHHHH
Q 014256           42 KKPSPSGN-SYSRNYDPVSHISSSLMNEESTPD-ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAM  115 (428)
Q Consensus        42 ~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~-a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~nla~  115 (428)
                      +-..|..+ ..|++++|+..|++++..+|.... ...++.+|.+++..|++++|+..|.++++.+|+    ..+++.+|.
T Consensus        36 ~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~  115 (235)
T TIGR03302        36 LYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGL  115 (235)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHH
Confidence            33444444 889999999999999999997653 234789999999999999999999999999987    347899999


Q ss_pred             HHHHh--------cCHHHHHHHHHHHHhcCCCCHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHhh
Q 014256          116 AYLKL--------RRFQEAEDDCTEALNLDDRYIKAY-----------------SRRATARKELGKLKESIEDSEFALRL  170 (428)
Q Consensus       116 ~~~~~--------~~~~eA~~~~~~al~l~p~~~~a~-----------------~~lg~~~~~lg~~~eA~~~~~~al~l  170 (428)
                      ++...        |++++|+..+.+++..+|++..++                 +.+|.++...|++.+|+..|++++..
T Consensus       116 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~  195 (235)
T TIGR03302       116 SNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVEN  195 (235)
T ss_pred             HHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            99987        889999999999999999986442                 46788899999999999999999999


Q ss_pred             CCCcH
Q 014256          171 EPQNQ  175 (428)
Q Consensus       171 ~P~~~  175 (428)
                      .|+.+
T Consensus       196 ~p~~~  200 (235)
T TIGR03302       196 YPDTP  200 (235)
T ss_pred             CCCCc
Confidence            88754

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.28  E-value=2.3e-11  Score=113.49  Aligned_cols=108  Identities=19%  Similarity=0.252  Sum_probs=101.1

Q ss_pred             ccCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHH
Q 014256           49 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE  127 (428)
Q Consensus        49 y~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~  127 (428)
                      +..++|.+|+..|.++|.++|.++.-  |.+++.+|.+.|.|+.|++.+..+|.+||+ ..+|..+|.+|+.+|+|++|+
T Consensus        92 m~~~~Y~eAv~kY~~AI~l~P~nAVy--ycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~  169 (304)
T KOG0553|consen   92 MKNKDYQEAVDKYTEAIELDPTNAVY--YCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAI  169 (304)
T ss_pred             HHhhhHHHHHHHHHHHHhcCCCcchH--HHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHH
Confidence            36788899999999999999997755  779999999999999999999999999999 899999999999999999999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q 014256          128 DDCTEALNLDDRYIKAYSRRATARKELGKLK  158 (428)
Q Consensus       128 ~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~  158 (428)
                      +.|.+||.++|++...+-+|..+...++...
T Consensus       170 ~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  170 EAYKKALELDPDNESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             HHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence            9999999999999999999999988888765

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.28  E-value=8e-11  Score=125.31  Aligned_cols=135  Identities=8%  Similarity=-0.033  Sum_probs=125.7

Q ss_pred             hhhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHH
Q 014256           39 KSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMA  116 (428)
Q Consensus        39 ~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~  116 (428)
                      ..++..++... ..|.+++|...++.+++..|++..+  +.+++.++.+.+++++|+..+++++..+|+ +.+++.+|.+
T Consensus        86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a--~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~  163 (694)
T PRK15179         86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEA--FILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKS  163 (694)
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHH--HHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence            45566666666 8999999999999999999999888  669999999999999999999999999999 9999999999


Q ss_pred             HHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH
Q 014256          117 YLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQ  175 (428)
Q Consensus       117 ~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~  175 (428)
                      +.++|+|++|+..|++++..+|+++.++..+|.+++..|+.++|...|++++.....-.
T Consensus       164 l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~  222 (694)
T PRK15179        164 WDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGA  222 (694)
T ss_pred             HHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcch
Confidence            99999999999999999999999999999999999999999999999999999876544

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.25  E-value=3.8e-11  Score=119.79  Aligned_cols=135  Identities=22%  Similarity=0.255  Sum_probs=104.7

Q ss_pred             cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCC----c----HHHHHHHHHHHHHhc
Q 014256           50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSP----T----AVAYANRAMAYLKLR  121 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p----~----~~~~~nla~~~~~~~  121 (428)
                      ..+++.-|..+|.+++.+.|.++-.  +..+|.+.+..+.|.+|+.+|+.++..-+    .    ...+.|+|.++.+++
T Consensus       392 ~t~n~kLAe~Ff~~A~ai~P~Dplv--~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~  469 (611)
T KOG1173|consen  392 RTNNLKLAEKFFKQALAIAPSDPLV--LHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLN  469 (611)
T ss_pred             HhccHHHHHHHHHHHHhcCCCcchh--hhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHh
Confidence            4677777888888888888887766  67888888888888888888888874322    1    345788888888888


Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 014256          122 RFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKS  186 (428)
Q Consensus       122 ~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~  186 (428)
                      +|++|+..++++|.+.|.++.++..+|.+|..+|+++.|+++|.++|.+.|++.-+..-+..|++
T Consensus       470 ~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie  534 (611)
T KOG1173|consen  470 KYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIE  534 (611)
T ss_pred             hHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence            88888888888888888888888888888888888888888888888888887666554444443

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.25  E-value=8.4e-11  Score=128.98  Aligned_cols=153  Identities=14%  Similarity=0.110  Sum_probs=124.3

Q ss_pred             CCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhc
Q 014256           44 PSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLR  121 (428)
Q Consensus        44 ~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~  121 (428)
                      ..|.+| ..|++++|+..|.+++..+|....+  +..+|.+++..|+|++|+..+.+++..+|. ..++..+|.++...|
T Consensus       130 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~--~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  207 (899)
T TIGR02917       130 LRGLAYLGLGQLELAQKSYEQALAIDPRSLYA--KLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLG  207 (899)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCChhh--HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcC
Confidence            334444 6788889999999998888877666  668888888888899999888888888887 778888888888888


Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH----------HHHHHHHHHHHHHH
Q 014256          122 RFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI----------KKQLAEVKSLYEKE  191 (428)
Q Consensus       122 ~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~----------~~~l~~a~~~~~~a  191 (428)
                      ++++|+..|.+++..+|.++.+++.++.++...|++++|...+..+++..|++...          .+++.+|...+.++
T Consensus       208 ~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  287 (899)
T TIGR02917       208 NIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDA  287 (899)
T ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            88889888888888888888888888888888888888888888888888876544          34567777777777


Q ss_pred             HHhchhh
Q 014256          192 VFQKASK  198 (428)
Q Consensus       192 ~~~~~~~  198 (428)
                      +..+|..
T Consensus       288 l~~~~~~  294 (899)
T TIGR02917       288 LKSAPEY  294 (899)
T ss_pred             HHhCCCc
Confidence            7766654

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.25  E-value=2.4e-10  Score=101.34  Aligned_cols=125  Identities=16%  Similarity=0.084  Sum_probs=101.7

Q ss_pred             cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc----HHHHHHHHHHHHHhcCHHH
Q 014256           50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQE  125 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~nla~~~~~~~~~~e  125 (428)
                      ..+.+..+...+...+..++....+..+..+|.++...|+|++|+..|.+++.+.|+    +.+|.++|.++..+|++++
T Consensus        11 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~e   90 (168)
T CHL00033         11 IDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTK   90 (168)
T ss_pred             cccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHH
Confidence            334566777777777677777777888999999999999999999999999988665    4589999999999999999


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHH-------HcCCHH-------HHHHHHHHHHhhCCCc
Q 014256          126 AEDDCTEALNLDDRYIKAYSRRATARK-------ELGKLK-------ESIEDSEFALRLEPQN  174 (428)
Q Consensus       126 A~~~~~~al~l~p~~~~a~~~lg~~~~-------~lg~~~-------eA~~~~~~al~l~P~~  174 (428)
                      |+..|.+++.++|.+..++.++|.++.       .+|+++       +|+..|++++..+|.+
T Consensus        91 A~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~  153 (168)
T CHL00033         91 ALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN  153 (168)
T ss_pred             HHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence            999999999999999999999999999       556655       3344444455555543

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.24  E-value=9.6e-11  Score=128.50  Aligned_cols=125  Identities=14%  Similarity=0.094  Sum_probs=60.3

Q ss_pred             cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCcHHHHHHHHHHHHHhcCHHHHHHH
Q 014256           50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDD  129 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~~~~~~nla~~~~~~~~~~eA~~~  129 (428)
                      ..|++++|+..+..+....|.....  +..+|.+++..|++++|+..|.+++...|+...+.++|.++...|++++|+..
T Consensus       681 ~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  758 (899)
T TIGR02917       681 AAKRTESAKKIAKSLQKQHPKAALG--FELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKT  758 (899)
T ss_pred             HcCCHHHHHHHHHHHHhhCcCChHH--HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHH
Confidence            4444555555555544444443333  33444455555555555555555544444433444444444445555555555


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q 014256          130 CTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE  176 (428)
Q Consensus       130 ~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~  176 (428)
                      +.+++..+|++..+++.+|.++..+|++++|+..|++++...|+++.
T Consensus       759 ~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~  805 (899)
T TIGR02917       759 LEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAV  805 (899)
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHH
Confidence            55554444444444444555454455555555555555444444443

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.22  E-value=3.7e-10  Score=100.56  Aligned_cols=130  Identities=15%  Similarity=0.158  Sum_probs=107.8

Q ss_pred             HHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 014256           60 HISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALN  135 (428)
Q Consensus        60 ~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~nla~~~~~~~~~~eA~~~~~~al~  135 (428)
                      .+...+..+++...+..++.+|..+...|++++|+.+|.+++.+.|+    ..++.++|.++..+|++++|+..+.+++.
T Consensus        21 ~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  100 (172)
T PRK02603         21 LILKILPINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE  100 (172)
T ss_pred             HHHHHcccccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            44555566666667777999999999999999999999999988765    46899999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhchhhh
Q 014256          136 LDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKT  199 (428)
Q Consensus       136 l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~~a~~~~~~~~  199 (428)
                      .+|.+..++..+|.++..+|+...+...+..++          ..+.+|.+.+.+++..+|.+.
T Consensus       101 ~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~----------~~~~~A~~~~~~a~~~~p~~~  154 (172)
T PRK02603        101 LNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAE----------ALFDKAAEYWKQAIRLAPNNY  154 (172)
T ss_pred             hCcccHHHHHHHHHHHHHcCChHhHhhCHHHHH----------HHHHHHHHHHHHHHhhCchhH
Confidence            999999999999999999999766665555443          346667777777777776654

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.22  E-value=4.7e-11  Score=119.55  Aligned_cols=118  Identities=18%  Similarity=0.248  Sum_probs=106.9

Q ss_pred             chHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 014256           56 DPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEAL  134 (428)
Q Consensus        56 ~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al  134 (428)
                      +-.+.|..+-...|...+......+|.+|.-.|+|++|+.||+.||..+|+ ...|+.+|..+..-.+.++|+..|.+|+
T Consensus       412 ~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rAL  491 (579)
T KOG1125|consen  412 HIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRAL  491 (579)
T ss_pred             HHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHH
Confidence            345677777777774333344669999999999999999999999999999 8999999999999999999999999999


Q ss_pred             hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 014256          135 NLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQ  173 (428)
Q Consensus       135 ~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~  173 (428)
                      ++.|.++.++|++|.++..+|.|++|+.+|-.||.+.+.
T Consensus       492 qLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k  530 (579)
T KOG1125|consen  492 QLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK  530 (579)
T ss_pred             hcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence            999999999999999999999999999999999999876

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.22  E-value=3.7e-11  Score=115.42  Aligned_cols=136  Identities=17%  Similarity=0.146  Sum_probs=92.8

Q ss_pred             cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHH
Q 014256           50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  128 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~  128 (428)
                      ..++++++...+.++....+.......|..+|.++.+.|++++|+.+|++++.++|+ ..+...++.++...|+++++..
T Consensus       122 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~  201 (280)
T PF13429_consen  122 RLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEARE  201 (280)
T ss_dssp             HTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHH
Confidence            667777777777776654422233444667777778888888888888888888877 6677777777777777777777


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 014256          129 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVK  185 (428)
Q Consensus       129 ~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~  185 (428)
                      .+.......|+++..+..+|.++..+|++++|+..|++++..+|+++.+...+..+.
T Consensus       202 ~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l  258 (280)
T PF13429_consen  202 ALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADAL  258 (280)
T ss_dssp             HHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccc
Confidence            777777777777777777788888888888888888888888887777755554443

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.21  E-value=8.9e-11  Score=113.26  Aligned_cols=155  Identities=23%  Similarity=0.257  Sum_probs=135.4

Q ss_pred             hhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-H-----------
Q 014256           41 AKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-A-----------  107 (428)
Q Consensus        41 a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~-----------  107 (428)
                      +...-+.++ ..|++++|...-...+++++.+.++  ++.+|.+++-.++.+.|+.+|++++.++|+ .           
T Consensus       171 a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~a--l~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~  248 (486)
T KOG0550|consen  171 AKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEA--LYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKK  248 (486)
T ss_pred             HHHhhhhhhhhcccchhHHHHHHHHHhcccchhHH--HHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHH
Confidence            334444556 7899999999999999999998877  779999999999999999999999999997 1           


Q ss_pred             -HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH-----
Q 014256          108 -VAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY----IKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI-----  177 (428)
Q Consensus       108 -~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~----~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~-----  177 (428)
                       ..|..+|.-.++.|+|..|.++|+.+|.+||++    ++.|.++|.++.++|+..+|+.+.+.++.|+|....+     
T Consensus       249 le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra  328 (486)
T KOG0550|consen  249 LEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRA  328 (486)
T ss_pred             HHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHH
Confidence             356778999999999999999999999999976    5679999999999999999999999999999987665     


Q ss_pred             -----HHHHHHHHHHHHHHHHhchh
Q 014256          178 -----KKQLAEVKSLYEKEVFQKAS  197 (428)
Q Consensus       178 -----~~~l~~a~~~~~~a~~~~~~  197 (428)
                           .+.+++|.+.|++++....+
T Consensus       329 ~c~l~le~~e~AV~d~~~a~q~~~s  353 (486)
T KOG0550|consen  329 NCHLALEKWEEAVEDYEKAMQLEKD  353 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccc
Confidence                 56788888888888776633

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.21  E-value=1.1e-10  Score=109.83  Aligned_cols=128  Identities=32%  Similarity=0.469  Sum_probs=108.0

Q ss_pred             cCCCCcchHHHHHhhhhc---CCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccC---Cc--HHHHHHHHHHHHHhc
Q 014256           50 SYSRNYDPVSHISSSLMN---EESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALS---PT--AVAYANRAMAYLKLR  121 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~---~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~---p~--~~~~~nla~~~~~~~  121 (428)
                      ..|++..-...++.....   +..+..|..++.-||-||+.++|..|+.+|+++|...   |+  +.+|+|||.|.+.+|
T Consensus        54 ~~gd~~~~~~~LqslK~da~E~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~  133 (390)
T KOG0551|consen   54 SEGDPNPDNVCLQSLKADAEEGEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLG  133 (390)
T ss_pred             CCCCCCccHHHHHHhhhccccCChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHH
Confidence            446665556665554433   1223457779999999999999999999999999974   55  789999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH
Q 014256          122 RFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI  177 (428)
Q Consensus       122 ~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~  177 (428)
                      +|..|+.+|.+|+.++|++.++++|-|.|+..+.++.+|+++.+..+.++-....+
T Consensus       134 NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~  189 (390)
T KOG0551|consen  134 NYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEAKKA  189 (390)
T ss_pred             HHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence            99999999999999999999999999999999999999999999998887655444

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.20  E-value=1.8e-10  Score=115.10  Aligned_cols=150  Identities=17%  Similarity=0.187  Sum_probs=125.5

Q ss_pred             cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHH
Q 014256           50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  128 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~  128 (428)
                      ..|++.+|..+|.++..++|....+  |...|..|...|..++|+.+|..|-++-|. ...+..+|+-|...++++.|..
T Consensus       324 ~i~k~seARry~SKat~lD~~fgpa--Wl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~  401 (611)
T KOG1173|consen  324 MIGKYSEARRYFSKATTLDPTFGPA--WLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEK  401 (611)
T ss_pred             HhcCcHHHHHHHHHHhhcCccccHH--HHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHH
Confidence            7799999999999999999988877  668888888888888888888888888777 4445557777777777777777


Q ss_pred             HHHHHHhcCCCCH-----------------------------------------HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 014256          129 DCTEALNLDDRYI-----------------------------------------KAYSRRATARKELGKLKESIEDSEFA  167 (428)
Q Consensus       129 ~~~~al~l~p~~~-----------------------------------------~a~~~lg~~~~~lg~~~eA~~~~~~a  167 (428)
                      .|.+|+.+.|.++                                         ..+.++|.++.+++++.+|+..|+++
T Consensus       402 Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~a  481 (611)
T KOG1173|consen  402 FFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKA  481 (611)
T ss_pred             HHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence            7777777777653                                         12678999999999999999999999


Q ss_pred             HhhCCCcHHH----------HHHHHHHHHHHHHHHHhchhhhHh
Q 014256          168 LRLEPQNQEI----------KKQLAEVKSLYEKEVFQKASKTLE  201 (428)
Q Consensus       168 l~l~P~~~~~----------~~~l~~a~~~~~~a~~~~~~~~~~  201 (428)
                      |.+.|.+...          .++++.|+..|.+++.++|.+...
T Consensus       482 L~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~  525 (611)
T KOG1173|consen  482 LLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFI  525 (611)
T ss_pred             HHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHH
Confidence            9999998776          688999999999999999988553

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.20  E-value=1.8e-10  Score=115.42  Aligned_cols=160  Identities=14%  Similarity=0.099  Sum_probs=115.6

Q ss_pred             ccChhhhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccC---------
Q 014256           35 SSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALS---------  104 (428)
Q Consensus        35 ~~~~~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~---------  104 (428)
                      ++...+|...+|... ..++-..||..++++++++|++.++  +..+|..|...|.-.+|+.++..-|...         
T Consensus       315 dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~Nlea--LmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a  392 (579)
T KOG1125|consen  315 DPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEA--LMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSA  392 (579)
T ss_pred             ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHH--HHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhcccc
Confidence            344445556666665 4455566777777777777777777  5577777777776666666666554332         


Q ss_pred             --------------------------------C---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 014256          105 --------------------------------P---TAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRAT  149 (428)
Q Consensus       105 --------------------------------p---~~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~  149 (428)
                                                      |   ++.++..+|..|...|+|+.|+.+|+.||..+|++...|.++|.
T Consensus       393 ~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGA  472 (579)
T KOG1125|consen  393 GENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGA  472 (579)
T ss_pred             CccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhH
Confidence                                            2   13455567888888888888888888888888888888888888


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCcHHH----------HHHHHHHHHHHHHHHHhch
Q 014256          150 ARKELGKLKESIEDSEFALRLEPQNQEI----------KKQLAEVKSLYEKEVFQKA  196 (428)
Q Consensus       150 ~~~~lg~~~eA~~~~~~al~l~P~~~~~----------~~~l~~a~~~~~~a~~~~~  196 (428)
                      ++..-.+..+|+..|.+|++|.|+...+          .+.+.+|..+|-.++.+.+
T Consensus       473 tLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~  529 (579)
T KOG1125|consen  473 TLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQR  529 (579)
T ss_pred             HhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhh
Confidence            8888888888888888888888887665          4667777777777776653

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.19  E-value=1.4e-10  Score=115.20  Aligned_cols=106  Identities=16%  Similarity=0.177  Sum_probs=98.8

Q ss_pred             cccCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHH
Q 014256           48 GNSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEA  126 (428)
Q Consensus        48 ~y~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA  126 (428)
                      ++..|+|++|+.+|.+++..+|.+..+  +..+|.+|...|+|++|+.++.+++.++|+ +.+|+++|.+|+.+|+|++|
T Consensus        12 a~~~~~~~~Ai~~~~~Al~~~P~~~~a--~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA   89 (356)
T PLN03088         12 AFVDDDFALAVDLYTQAIDLDPNNAEL--YADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTA   89 (356)
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHH
Confidence            347789999999999999999998777  779999999999999999999999999998 88999999999999999999


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 014256          127 EDDCTEALNLDDRYIKAYSRRATARKELG  155 (428)
Q Consensus       127 ~~~~~~al~l~p~~~~a~~~lg~~~~~lg  155 (428)
                      +..|++++.++|++..+...++.|...+.
T Consensus        90 ~~~~~~al~l~P~~~~~~~~l~~~~~kl~  118 (356)
T PLN03088         90 KAALEKGASLAPGDSRFTKLIKECDEKIA  118 (356)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999998888876663

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.18  E-value=6.3e-10  Score=91.74  Aligned_cols=103  Identities=14%  Similarity=0.150  Sum_probs=95.5

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHccCCc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---HHHHHHHH
Q 014256           76 SEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY---IKAYSRRA  148 (428)
Q Consensus        76 ~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~---~~a~~~lg  148 (428)
                      .++.+|..++..|+|++|+..|.+++..+|+    ..+++.+|.+++..|++++|+..|..++..+|++   +.+++.+|
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~   83 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG   83 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence            3789999999999999999999999999876    5689999999999999999999999999999885   67899999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCcHHHH
Q 014256          149 TARKELGKLKESIEDSEFALRLEPQNQEIK  178 (428)
Q Consensus       149 ~~~~~lg~~~eA~~~~~~al~l~P~~~~~~  178 (428)
                      .++..+|++++|...+.+++...|++..+.
T Consensus        84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~  113 (119)
T TIGR02795        84 MSLQELGDKEKAKATLQQVIKRYPGSSAAK  113 (119)
T ss_pred             HHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence            999999999999999999999999987654

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.18  E-value=9.3e-11  Score=87.67  Aligned_cols=66  Identities=35%  Similarity=0.473  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCC
Q 014256          107 AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG-KLKESIEDSEFALRLEP  172 (428)
Q Consensus       107 ~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg-~~~eA~~~~~~al~l~P  172 (428)
                      +..|.++|.+++..|+|++|+..|++++.++|+++.+++++|.++..+| ++.+|+.+++++++++|
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            3455566666666666666666666666666666666666666666666 46666666666666655

...

>PLN02789 farnesyltranstransferase

Probab=99.18  E-value=2.2e-10  Score=111.62  Aligned_cols=149  Identities=11%  Similarity=0.060  Sum_probs=126.4

Q ss_pred             cChhhhhcCCCccc-cCC-CCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCH--HHHHHHHHHHHccCCc-HHHH
Q 014256           36 SSLKSAKKPSPSGN-SYS-RNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKF--KEAIDCYSRSIALSPT-AVAY  110 (428)
Q Consensus        36 ~~~~~a~~~~~~~y-~~g-~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~--~~Ai~~y~~al~~~p~-~~~~  110 (428)
                      +++-.+....+.++ ..| ++.+++..+.+++..+|++..+  |..+|.++.+.|++  ++++.++.++++.+|. ..+|
T Consensus        68 P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqa--W~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW  145 (320)
T PLN02789         68 PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQI--WHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAW  145 (320)
T ss_pred             chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHH--hHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHH
Confidence            33334443334444 556 5799999999999999998888  88999999988874  7889999999999998 9999


Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc---CCH----HHHHHHHHHHHhhCCCcHHHHHHHHH
Q 014256          111 ANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKEL---GKL----KESIEDSEFALRLEPQNQEIKKQLAE  183 (428)
Q Consensus       111 ~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~l---g~~----~eA~~~~~~al~l~P~~~~~~~~l~~  183 (428)
                      .++|.++..+|+|++|+++|+++|+.||.|..+|+.+|.+...+   |.+    ++++.+..+++.++|+|..++..+..
T Consensus       146 ~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~  225 (320)
T PLN02789        146 SHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRG  225 (320)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHH
Confidence            99999999999999999999999999999999999999998876   334    47888888999999999999877666


Q ss_pred             HHH
Q 014256          184 VKS  186 (428)
Q Consensus       184 a~~  186 (428)
                      +..
T Consensus       226 ll~  228 (320)
T PLN02789        226 LFK  228 (320)
T ss_pred             HHh
Confidence            543

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.17  E-value=3.7e-10  Score=102.84  Aligned_cols=112  Identities=19%  Similarity=0.216  Sum_probs=103.1

Q ss_pred             hcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHcCC--HHHHHH
Q 014256           87 QKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATAR-KELGK--LKESIE  162 (428)
Q Consensus        87 ~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~-~~lg~--~~eA~~  162 (428)
                      .++.++++..+.+++..+|+ ...|.++|.+|..+|++++|+..|.+++.++|+++.++..+|.++ ...|+  +++|..
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~  131 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE  131 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence            67789999999999999999 999999999999999999999999999999999999999999975 77787  599999


Q ss_pred             HHHHHHhhCCCcHHH----------HHHHHHHHHHHHHHHHhchhh
Q 014256          163 DSEFALRLEPQNQEI----------KKQLAEVKSLYEKEVFQKASK  198 (428)
Q Consensus       163 ~~~~al~l~P~~~~~----------~~~l~~a~~~~~~a~~~~~~~  198 (428)
                      .++++++++|++..+          .+++++|+..|++++...|..
T Consensus       132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~  177 (198)
T PRK10370        132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPR  177 (198)
T ss_pred             HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            999999999999887          467889999999999888654

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.17  E-value=6e-10  Score=86.04  Aligned_cols=97  Identities=40%  Similarity=0.591  Sum_probs=92.7

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 014256           77 EKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG  155 (428)
Q Consensus        77 ~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg  155 (428)
                      ++.+|..++..|++++|+..+.+++...|. ..++..+|.++...+++++|+..|.+++...|.+..+++.+|.++...|
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG   82 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence            678999999999999999999999999998 7889999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhhCCC
Q 014256          156 KLKESIEDSEFALRLEPQ  173 (428)
Q Consensus       156 ~~~eA~~~~~~al~l~P~  173 (428)
                      ++++|...+.+++.+.|.
T Consensus        83 ~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          83 KYEEALEAYEKALELDPN  100 (100)
T ss_pred             hHHHHHHHHHHHHccCCC
Confidence            999999999999998874

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.16  E-value=6.4e-10  Score=118.50  Aligned_cols=142  Identities=8%  Similarity=0.010  Sum_probs=124.4

Q ss_pred             cchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 014256           55 YDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEA  133 (428)
Q Consensus        55 ~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~a  133 (428)
                      .+++..........|++.++  +..+|.+....|.+++|...+..++++.|+ ..++.++|.++.+++++++|+..++++
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~--~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~  146 (694)
T PRK15179         69 AAALPELLDYVRRYPHTELF--QVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELY  146 (694)
T ss_pred             HhhHHHHHHHHHhccccHHH--HHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            33444444444456665555  789999999999999999999999999999 889999999999999999999999999


Q ss_pred             HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH----------HHHHHHHHHHHHHHHHhchhh
Q 014256          134 LNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI----------KKQLAEVKSLYEKEVFQKASK  198 (428)
Q Consensus       134 l~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~----------~~~l~~a~~~~~~a~~~~~~~  198 (428)
                      +..+|+++.+++.+|.++..+|+|++|+..|++++..+|++..+          .+..++|...|+++++.....
T Consensus       147 l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~  221 (694)
T PRK15179        147 FSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDG  221 (694)
T ss_pred             hhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcc
Confidence            99999999999999999999999999999999999999987776          367888999999998776544

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.16  E-value=5.3e-10  Score=122.06  Aligned_cols=155  Identities=14%  Similarity=0.083  Sum_probs=135.6

Q ss_pred             Cccc-cCCCCcchHHHHHhhhhcCCCCch--HHHHHHHHHHHHHhcCHHHHHHHHHHHHccCC-------------c---
Q 014256           46 PSGN-SYSRNYDPVSHISSSLMNEESTPD--ATSEKELGNECFKQKKFKEAIDCYSRSIALSP-------------T---  106 (428)
Q Consensus        46 ~~~y-~~g~~~~Ai~~~~~al~~~p~~~~--a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p-------------~---  106 (428)
                      +..| ..|++++|+..|++++..+|....  ......++..+...|++++|+..+.++....|             +   
T Consensus       279 a~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~  358 (765)
T PRK10049        279 ASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDW  358 (765)
T ss_pred             HHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchH
Confidence            4445 889999999999999988876521  12255778888999999999999999998876             2   


Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH---------
Q 014256          107 AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI---------  177 (428)
Q Consensus       107 ~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~---------  177 (428)
                      ..++..+|.++...|++++|+..+++++...|.++.+++.+|.++...|++++|+..+++++.++|++..+         
T Consensus       359 ~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al  438 (765)
T PRK10049        359 LQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTAL  438 (765)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Confidence            34678899999999999999999999999999999999999999999999999999999999999999654         


Q ss_pred             -HHHHHHHHHHHHHHHHhchhhhH
Q 014256          178 -KKQLAEVKSLYEKEVFQKASKTL  200 (428)
Q Consensus       178 -~~~l~~a~~~~~~a~~~~~~~~~  200 (428)
                       .+++++|...+++.+...|.++.
T Consensus       439 ~~~~~~~A~~~~~~ll~~~Pd~~~  462 (765)
T PRK10049        439 DLQEWRQMDVLTDDVVAREPQDPG  462 (765)
T ss_pred             HhCCHHHHHHHHHHHHHhCCCCHH
Confidence             56789999999999999998876

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.14  E-value=1.9e-10  Score=86.02  Aligned_cols=65  Identities=40%  Similarity=0.647  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCC
Q 014256           74 ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLR-RFQEAEDDCTEALNLDD  138 (428)
Q Consensus        74 a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~-~~~eA~~~~~~al~l~p  138 (428)
                      +..|..+|.+++..|+|++|+.+|.++++++|+ +.+|+++|.||..+| ++++|+.+++++++++|
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            455889999999999999999999999999999 999999999999999 79999999999999998

...

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.11  E-value=6e-10  Score=105.26  Aligned_cols=104  Identities=25%  Similarity=0.378  Sum_probs=98.3

Q ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 014256           73 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATAR  151 (428)
Q Consensus        73 ~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~  151 (428)
                      ++.-++.+|..++..|++.+|+..|..+++.+|+ ..+++.||.+|+.+|+-..|+.++++++++.|+...+...+|.++
T Consensus        37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vl  116 (504)
T KOG0624|consen   37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVL  116 (504)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhh
Confidence            4555889999999999999999999999999999 899999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCcHH
Q 014256          152 KELGKLKESIEDSEFALRLEPQNQE  176 (428)
Q Consensus       152 ~~lg~~~eA~~~~~~al~l~P~~~~  176 (428)
                      ..+|.+++|..+|..+|..+|++..
T Consensus       117 lK~Gele~A~~DF~~vl~~~~s~~~  141 (504)
T KOG0624|consen  117 LKQGELEQAEADFDQVLQHEPSNGL  141 (504)
T ss_pred             hhcccHHHHHHHHHHHHhcCCCcch
Confidence            9999999999999999999996543

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.11  E-value=2.2e-09  Score=98.54  Aligned_cols=156  Identities=17%  Similarity=0.115  Sum_probs=133.9

Q ss_pred             cchhhhhccChhhhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc
Q 014256           28 SSKDNLVSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT  106 (428)
Q Consensus        28 ~~~~~~~~~~~~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~  106 (428)
                      .+......++...+ ..+...+ ..|+-+.+..+..++...+|.+...  +..+|...+..|+|..|+..+.++..++|+
T Consensus        56 l~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~l--l~~~gk~~~~~g~~~~A~~~~rkA~~l~p~  132 (257)
T COG5010          56 LGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDREL--LAAQGKNQIRNGNFGEAVSVLRKAARLAPT  132 (257)
T ss_pred             HHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHH--HHHHHHHHHHhcchHHHHHHHHHHhccCCC
Confidence            33444455555555 4455555 7888899999999988888876655  567999999999999999999999999998


Q ss_pred             -HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 014256          107 -AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVK  185 (428)
Q Consensus       107 -~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~  185 (428)
                       ..+|..+|.+|.+.|++++|...|.+++++.|..+.+..|+|..+.-.|+++.|...+..+....+.+..+..++.-+.
T Consensus       133 d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~  212 (257)
T COG5010         133 DWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVV  212 (257)
T ss_pred             ChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence             9999999999999999999999999999999999999999999999999999999999999998888888877766554


Q ss_pred             H
Q 014256          186 S  186 (428)
Q Consensus       186 ~  186 (428)
                      .
T Consensus       213 ~  213 (257)
T COG5010         213 G  213 (257)
T ss_pred             h
Confidence            3

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.11  E-value=1.9e-10  Score=103.70  Aligned_cols=99  Identities=39%  Similarity=0.599  Sum_probs=93.7

Q ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 014256           73 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATAR  151 (428)
Q Consensus        73 ~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~  151 (428)
                      .+..++.-|+.|+...+|..|+.+|.++|.++|. +.+|.|+|.||+++++|+.+..+|.+|++++|+.+++++.+|.+.
T Consensus         9 ~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~   88 (284)
T KOG4642|consen    9 SAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWL   88 (284)
T ss_pred             HHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHH
Confidence            3555888999999999999999999999999999 889999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhC
Q 014256          152 KELGKLKESIEDSEFALRLE  171 (428)
Q Consensus       152 ~~lg~~~eA~~~~~~al~l~  171 (428)
                      .....|.+|+..+.++..+.
T Consensus        89 l~s~~~~eaI~~Lqra~sl~  108 (284)
T KOG4642|consen   89 LQSKGYDEAIKVLQRAYSLL  108 (284)
T ss_pred             HhhccccHHHHHHHHHHHHH
Confidence            99999999999999996654

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.11  E-value=1.3e-09  Score=101.82  Aligned_cols=105  Identities=21%  Similarity=0.203  Sum_probs=96.0

Q ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHH---HHH
Q 014256           73 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIK---AYS  145 (428)
Q Consensus        73 ~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~---a~~  145 (428)
                      .+..++.+|..++..|+|++|+..|++++..+|+    ..+++.+|.+|+.+|++++|+..|+++++.+|+++.   +++
T Consensus        32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~  111 (235)
T TIGR03302        32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY  111 (235)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence            3445889999999999999999999999999987    357899999999999999999999999999998876   799


Q ss_pred             HHHHHHHHc--------CCHHHHHHHHHHHHhhCCCcHHH
Q 014256          146 RRATARKEL--------GKLKESIEDSEFALRLEPQNQEI  177 (428)
Q Consensus       146 ~lg~~~~~l--------g~~~eA~~~~~~al~l~P~~~~~  177 (428)
                      .+|.++...        |++++|+..|++++..+|++...
T Consensus       112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~  151 (235)
T TIGR03302       112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYA  151 (235)
T ss_pred             HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhH
Confidence            999999987        88999999999999999998654

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=99.10  E-value=1.4e-10  Score=114.53  Aligned_cols=116  Identities=39%  Similarity=0.597  Sum_probs=109.0

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 014256           74 ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARK  152 (428)
Q Consensus        74 a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~  152 (428)
                      +..++..++.+++.++|+.|+..|.++|+++|+ +.++.+|+.++++.++|..|+.++.+|++++|.+.++|+++|.+..
T Consensus         4 a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m   83 (476)
T KOG0376|consen    4 AEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVM   83 (476)
T ss_pred             hhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHH
Confidence            334678899999999999999999999999999 9999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHH
Q 014256          153 ELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYE  189 (428)
Q Consensus       153 ~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~  189 (428)
                      .++.+.+|+.+|+....+.|+++.+...+.++.....
T Consensus        84 ~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs  120 (476)
T KOG0376|consen   84 ALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVS  120 (476)
T ss_pred             hHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999888888766544

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.10  E-value=3.5e-10  Score=97.26  Aligned_cols=89  Identities=18%  Similarity=0.103  Sum_probs=84.1

Q ss_pred             ccCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHH
Q 014256           49 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE  127 (428)
Q Consensus        49 y~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~  127 (428)
                      |..|++++|+..|+-+..++|.+...  |+++|.++-..|+|.+|+.+|.+++.++|+ +..++|.|.|++.+|+.+.|.
T Consensus        46 y~~G~l~~A~~~f~~L~~~Dp~~~~y--~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~  123 (157)
T PRK15363         46 MEVKEFAGAARLFQLLTIYDAWSFDY--WFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAI  123 (157)
T ss_pred             HHCCCHHHHHHHHHHHHHhCcccHHH--HHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHH
Confidence            48999999999999999999987766  889999999999999999999999999999 999999999999999999999


Q ss_pred             HHHHHHHhcCCC
Q 014256          128 DDCTEALNLDDR  139 (428)
Q Consensus       128 ~~~~~al~l~p~  139 (428)
                      ..|+.++..-..
T Consensus       124 ~aF~~Ai~~~~~  135 (157)
T PRK15363        124 KALKAVVRICGE  135 (157)
T ss_pred             HHHHHHHHHhcc
Confidence            999999987633

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.09  E-value=2.3e-09  Score=117.15  Aligned_cols=130  Identities=10%  Similarity=0.109  Sum_probs=116.1

Q ss_pred             cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHH
Q 014256           50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  128 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~  128 (428)
                      ..|++++|+..|.++...+|....+  +..+|.++...|++++|+.+|+++++++|. +.++.++|.++...|++++|+.
T Consensus        27 ~~g~~~~A~~~~~~~~~~~~~~a~~--~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~  104 (765)
T PRK10049         27 WAGQDAEVITVYNRYRVHMQLPARG--YAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALV  104 (765)
T ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            6789999999999998877766555  679999999999999999999999999998 8888999999999999999999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 014256          129 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLA  182 (428)
Q Consensus       129 ~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~  182 (428)
                      .+.+++..+|+++. ++.+|.++...|++++|+..+++++.+.|++..+...+.
T Consensus       105 ~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la  157 (765)
T PRK10049        105 KAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYV  157 (765)
T ss_pred             HHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            99999999999999 999999999999999999999999999999988754443

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.09  E-value=5.4e-10  Score=94.90  Aligned_cols=104  Identities=17%  Similarity=0.115  Sum_probs=93.5

Q ss_pred             hhhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHH
Q 014256           39 KSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMA  116 (428)
Q Consensus        39 ~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~  116 (428)
                      ..+...++..+ ..|++++|+..|++++..+|.+..+  +..+|.+++..|++++|+.+|.+++..+|. ...++++|.+
T Consensus        17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~--~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~   94 (135)
T TIGR02552        17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRY--WLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAEC   94 (135)
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence            34455555556 8899999999999999999987777  779999999999999999999999999998 8999999999


Q ss_pred             HHHhcCHHHHHHHHHHHHhcCCCCHHHH
Q 014256          117 YLKLRRFQEAEDDCTEALNLDDRYIKAY  144 (428)
Q Consensus       117 ~~~~~~~~eA~~~~~~al~l~p~~~~a~  144 (428)
                      |...|++++|+..++++++++|++....
T Consensus        95 ~~~~g~~~~A~~~~~~al~~~p~~~~~~  122 (135)
T TIGR02552        95 LLALGEPESALKALDLAIEICGENPEYS  122 (135)
T ss_pred             HHHcCCHHHHHHHHHHHHHhccccchHH
Confidence            9999999999999999999999887643

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.06  E-value=5.6e-09  Score=98.80  Aligned_cols=144  Identities=15%  Similarity=0.133  Sum_probs=122.4

Q ss_pred             hccChhhhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCch---HHH----------HHHHHHHHHHhcCHHHHHHHHHH
Q 014256           34 VSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPD---ATS----------EKELGNECFKQKKFKEAIDCYSR   99 (428)
Q Consensus        34 ~~~~~~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~---a~~----------~~~lg~~~~~~g~~~~Ai~~y~~   99 (428)
                      .++++..|...-|..+ ++|.+++|+..|..+|..+|.+..   +..          +......++..|++..|+++.+.
T Consensus       101 lKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~  180 (504)
T KOG0624|consen  101 LKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITH  180 (504)
T ss_pred             cCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHH
Confidence            4566666665555555 999999999999999999986432   211          23334456667999999999999


Q ss_pred             HHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH
Q 014256          100 SIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI  177 (428)
Q Consensus       100 al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~  177 (428)
                      .+++.|- +.++..|+.||...|+...|+.++..+-++..++...+|..+..++..|+.+.++...+.+|+++|++...
T Consensus       181 llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~C  259 (504)
T KOG0624|consen  181 LLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLC  259 (504)
T ss_pred             HHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhH
Confidence            9999998 88999999999999999999999999999999999999999999999999999999999999999998765

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.06  E-value=3e-09  Score=111.34  Aligned_cols=122  Identities=16%  Similarity=0.166  Sum_probs=118.8

Q ss_pred             ccCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHH
Q 014256           49 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE  127 (428)
Q Consensus        49 y~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~  127 (428)
                      |..|++++|...+.+++..+|.+..+  |+.+|.+|.++|+.++|+.++..|-.++|. ...|..++....++|++.+|.
T Consensus       150 farg~~eeA~~i~~EvIkqdp~~~~a--y~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~  227 (895)
T KOG2076|consen  150 FARGDLEEAEEILMEVIKQDPRNPIA--YYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQAR  227 (895)
T ss_pred             HHhCCHHHHHHHHHHHHHhCccchhh--HHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHH
Confidence            47799999999999999999999888  889999999999999999999999999998 999999999999999999999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 014256          128 DDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEP  172 (428)
Q Consensus       128 ~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P  172 (428)
                      -+|.+||+.+|.+.+..++++..|.++|++..|...|.+++.+.|
T Consensus       228 ~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p  272 (895)
T KOG2076|consen  228 YCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP  272 (895)
T ss_pred             HHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence            999999999999999999999999999999999999999999999

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.05  E-value=6.6e-10  Score=104.42  Aligned_cols=141  Identities=15%  Similarity=0.118  Sum_probs=121.7

Q ss_pred             cChhhhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccC--Cc--HHHH
Q 014256           36 SSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALS--PT--AVAY  110 (428)
Q Consensus        36 ~~~~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~--p~--~~~~  110 (428)
                      +..-+++.+++..| ..++++-|..+|+++|...-..++.  +.++|.|++-.++|+-++.+|.+++...  |+  +++|
T Consensus       321 ~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speL--f~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvW  398 (478)
T KOG1129|consen  321 PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPEL--FCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVW  398 (478)
T ss_pred             CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHH--HhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhh
Confidence            45557888888888 7788888999999999987666666  7799999999999999999999998865  44  7889


Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHH
Q 014256          111 ANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK  178 (428)
Q Consensus       111 ~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~  178 (428)
                      +|+|.+....|++..|.++|.-|+.-|+++..++.++|..-.+.|+..+|...+..+-.+.|+-.+..
T Consensus       399 YNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~  466 (478)
T KOG1129|consen  399 YNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVT  466 (478)
T ss_pred             hccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999888765543

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.05  E-value=5.6e-09  Score=103.26  Aligned_cols=138  Identities=20%  Similarity=0.140  Sum_probs=126.0

Q ss_pred             ccCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHH
Q 014256           49 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE  127 (428)
Q Consensus        49 y~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~  127 (428)
                      |..|++++|...++.++...|++...  +-..|.+++..++..+|++.+.+++.++|+ ...+.++|.+|++.|++.+|+
T Consensus       317 ~~~~~~d~A~~~l~~L~~~~P~N~~~--~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai  394 (484)
T COG4783         317 YLAGQYDEALKLLQPLIAAQPDNPYY--LELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAI  394 (484)
T ss_pred             HHhcccchHHHHHHHHHHhCCCCHHH--HHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHH
Confidence            37899999999999999999998765  558999999999999999999999999999 899999999999999999999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Q 014256          128 DDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLY  188 (428)
Q Consensus       128 ~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~  188 (428)
                      ..+...+..+|+++..|..+|.+|..+|+-.+|...+.+.+.+......+...+..|.+..
T Consensus       395 ~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~  455 (484)
T COG4783         395 RILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQV  455 (484)
T ss_pred             HHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999887777666666555543

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.02  E-value=7.9e-09  Score=97.15  Aligned_cols=134  Identities=18%  Similarity=0.156  Sum_probs=118.5

Q ss_pred             CCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhc---CHHHH
Q 014256           51 YSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLR---RFQEA  126 (428)
Q Consensus        51 ~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~---~~~eA  126 (428)
                      ....+..+.-++..+..+|++.+.  |..+|.+|+..|++..|...|.+++++.|+ +..+..+|.+++.+.   .-.++
T Consensus       135 ~~~~~~l~a~Le~~L~~nP~d~eg--W~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a  212 (287)
T COG4235         135 EQEMEALIARLETHLQQNPGDAEG--WDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKA  212 (287)
T ss_pred             cccHHHHHHHHHHHHHhCCCCchh--HHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHH
Confidence            344666788889999999998877  889999999999999999999999999998 889999998877764   57789


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 014256          127 EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKS  186 (428)
Q Consensus       127 ~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~  186 (428)
                      ...+++++.+||.++.+.+.+|..++..|+|.+|...++..+...|.+..-....+..+.
T Consensus       213 ~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ia  272 (287)
T COG4235         213 RALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERSIA  272 (287)
T ss_pred             HHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999988776655554443

>PRK15331 chaperone protein SicA; Provisional

Probab=99.02  E-value=5.5e-09  Score=90.27  Aligned_cols=102  Identities=13%  Similarity=0.043  Sum_probs=95.5

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 014256           76 SEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKEL  154 (428)
Q Consensus        76 ~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~l  154 (428)
                      ..+..|..++..|+|++|...|+-+.-.+|. +..|..+|.|+..+++|++|+..|..|..++++++...+..|.|+..+
T Consensus        39 ~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l  118 (165)
T PRK15331         39 GLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLM  118 (165)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHh
Confidence            3788999999999999999999999999998 899999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhhCCCcHHHH
Q 014256          155 GKLKESIEDSEFALRLEPQNQEIK  178 (428)
Q Consensus       155 g~~~eA~~~~~~al~l~P~~~~~~  178 (428)
                      |+...|...|..++. .|.+..++
T Consensus       119 ~~~~~A~~~f~~a~~-~~~~~~l~  141 (165)
T PRK15331        119 RKAAKARQCFELVNE-RTEDESLR  141 (165)
T ss_pred             CCHHHHHHHHHHHHh-CcchHHHH
Confidence            999999999999998 56655544

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.01  E-value=1.4e-08  Score=92.66  Aligned_cols=126  Identities=21%  Similarity=0.103  Sum_probs=76.9

Q ss_pred             cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHH
Q 014256           50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  128 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~  128 (428)
                      ..|.+++|+++|+..+..+|.+...  ++..--+...+|+--+||+.....++..+. ..+|..++.+|+..|+|+.|.-
T Consensus        98 a~~~~~~A~e~y~~lL~ddpt~~v~--~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~f  175 (289)
T KOG3060|consen   98 ATGNYKEAIEYYESLLEDDPTDTVI--RKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAF  175 (289)
T ss_pred             HhhchhhHHHHHHHHhccCcchhHH--HHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHH
Confidence            4566666666666666666655444  344444455556666666666666666655 6666666666666666666666


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCcHHH
Q 014256          129 DCTEALNLDDRYIKAYSRRATARKELG---KLKESIEDSEFALRLEPQNQEI  177 (428)
Q Consensus       129 ~~~~al~l~p~~~~a~~~lg~~~~~lg---~~~eA~~~~~~al~l~P~~~~~  177 (428)
                      ++++.+-+.|.++-.+.++|.+++-+|   ++.-|..+|.++++++|.+..+
T Consensus       176 ClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ra  227 (289)
T KOG3060|consen  176 CLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRA  227 (289)
T ss_pred             HHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHH
Confidence            666666666666666666666666555   3445666666666666644443

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.01  E-value=4.4e-09  Score=95.29  Aligned_cols=102  Identities=28%  Similarity=0.381  Sum_probs=93.0

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHcc--------CCc-----------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 014256           76 SEKELGNECFKQKKFKEAIDCYSRSIAL--------SPT-----------AVAYANRAMAYLKLRRFQEAEDDCTEALNL  136 (428)
Q Consensus        76 ~~~~lg~~~~~~g~~~~Ai~~y~~al~~--------~p~-----------~~~~~nla~~~~~~~~~~eA~~~~~~al~l  136 (428)
                      .+...||-+|+.|+|.+|..+|..|+..        .|.           ..++.|.+.|++..|+|-++++.|+..+..
T Consensus       180 ~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~  259 (329)
T KOG0545|consen  180 VLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRH  259 (329)
T ss_pred             HHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhc
Confidence            4788999999999999999999999753        232           357899999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH
Q 014256          137 DDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI  177 (428)
Q Consensus       137 ~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~  177 (428)
                      +|.|.+|||++|.++...=+..+|..+|.++|+++|.-..+
T Consensus       260 ~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv  300 (329)
T KOG0545|consen  260 HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV  300 (329)
T ss_pred             CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence            99999999999999999999999999999999999986554

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.00  E-value=6.8e-09  Score=112.68  Aligned_cols=150  Identities=12%  Similarity=0.038  Sum_probs=123.1

Q ss_pred             ccCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHH
Q 014256           49 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE  127 (428)
Q Consensus        49 y~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~  127 (428)
                      ++.|+++.|+..|++++..+|.+..+  ...+..++...|++++|+.++++++.-.|. ......+|.+|..+|+|++|+
T Consensus        45 ~r~Gd~~~Al~~L~qaL~~~P~~~~a--v~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Ai  122 (822)
T PRK14574         45 ARAGDTAPVLDYLQEESKAGPLQSGQ--VDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQAL  122 (822)
T ss_pred             HhCCCHHHHHHHHHHHHhhCccchhh--HHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence            47899999999999999999987544  227788888889999999999999933233 555566688999999999999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH------H---HHHHHHHHHHHHHHHhchhh
Q 014256          128 DDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI------K---KQLAEVKSLYEKEVFQKASK  198 (428)
Q Consensus       128 ~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~------~---~~l~~a~~~~~~a~~~~~~~  198 (428)
                      +.|+++++.+|+++.++..++.++...|++++|+..+++++..+|.+...      .   ....+|+..|++++..+|.+
T Consensus       123 ely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n  202 (822)
T PRK14574        123 ALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTS  202 (822)
T ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCC
Confidence            99999999999999999988899999999999999999999999986553      1   33335888888999988877


Q ss_pred             hH
Q 014256          199 TL  200 (428)
Q Consensus       199 ~~  200 (428)
                      ..
T Consensus       203 ~e  204 (822)
T PRK14574        203 EE  204 (822)
T ss_pred             HH
Confidence            65

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.00  E-value=2.5e-09  Score=103.80  Aligned_cols=139  Identities=21%  Similarity=0.253  Sum_probs=107.7

Q ss_pred             hhhhcchhhhhh-hhhcccchhhhhccChhhhhcCCCccc-----cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHH
Q 014256           11 DWDLSLNEKDKK-MKHKASSKDNLVSSSLKSAKKPSPSGN-----SYSRNYDPVSHISSSLMNEESTPDATSEKELGNEC   84 (428)
Q Consensus        11 ~~e~~~~e~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~y-----~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~   84 (428)
                      +|.+...+++.. ...+..|+.+|+.++|..|..+|..+.     ..+..+   +.-..+...     ...++.+++.|+
T Consensus       196 s~~~~~~e~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~---ee~~~~~~~-----k~~~~lNlA~c~  267 (397)
T KOG0543|consen  196 SWKMFAEERLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDE---EEQKKAEAL-----KLACHLNLAACY  267 (397)
T ss_pred             ccccchHHHHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCH---HHHHHHHHH-----HHHHhhHHHHHH
Confidence            788887777777 677789999999888888777666652     111111   111111111     123478999999


Q ss_pred             HHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 014256           85 FKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKL  157 (428)
Q Consensus        85 ~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~  157 (428)
                      .+.++|..|+.+.+++|.++|+ ..++|.+|.+++.+++|+.|+.+|.++++++|.|-.+...+..+......+
T Consensus       268 lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~  341 (397)
T KOG0543|consen  268 LKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREY  341 (397)
T ss_pred             HhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998 899999999999999999999999999999999988877777766555444

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.00  E-value=1.1e-09  Score=85.29  Aligned_cols=80  Identities=29%  Similarity=0.363  Sum_probs=62.9

Q ss_pred             hcCHHHHHHHHHHHHccCCc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 014256           87 QKKFKEAIDCYSRSIALSPT---AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIED  163 (428)
Q Consensus        87 ~g~~~~Ai~~y~~al~~~p~---~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~  163 (428)
                      +|+|+.|+..|+++++.+|.   ...++++|.||+++|+|++|+..+++ ...++.+...++.+|.++..+|+|++|+..
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~   80 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA   80 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            57888888888888888873   55677788888888888888888888 777888878888888888888888888888


Q ss_pred             HHHH
Q 014256          164 SEFA  167 (428)
Q Consensus       164 ~~~a  167 (428)
                      |+++
T Consensus        81 l~~~   84 (84)
T PF12895_consen   81 LEKA   84 (84)
T ss_dssp             HHHH
T ss_pred             HhcC
Confidence            7764

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.99  E-value=2.4e-09  Score=102.88  Aligned_cols=154  Identities=17%  Similarity=0.132  Sum_probs=91.3

Q ss_pred             CCCccccCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccC--Cc-HHHHHHHHHHHHHh
Q 014256           44 PSPSGNSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALS--PT-AVAYANRAMAYLKL  120 (428)
Q Consensus        44 ~~~~~y~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~--p~-~~~~~nla~~~~~~  120 (428)
                      ++...+..+++++|+..+.++....+ .+..  +.....++...|+++++...+.++....  +. +.+|..+|.++.+.
T Consensus        83 ~l~~l~~~~~~~~A~~~~~~~~~~~~-~~~~--l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~  159 (280)
T PF13429_consen   83 RLIQLLQDGDPEEALKLAEKAYERDG-DPRY--LLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQL  159 (280)
T ss_dssp             --------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHC
T ss_pred             cccccccccccccccccccccccccc-ccch--hhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHc
Confidence            33333466778888887777766543 2222  4566777888899999998888877644  33 77888899999999


Q ss_pred             cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH----------HHHHHHHHHHHHH
Q 014256          121 RRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI----------KKQLAEVKSLYEK  190 (428)
Q Consensus       121 ~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~----------~~~l~~a~~~~~~  190 (428)
                      |++++|+.+++++++++|++..+...++.++...|+++++...+.......|.++..          .++..+|...|++
T Consensus       160 G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~  239 (280)
T PF13429_consen  160 GDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEK  239 (280)
T ss_dssp             CHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccc
Confidence            999999999999999999999999999999999999988777777777776555433          5678888888888


Q ss_pred             HHHhchhhhH
Q 014256          191 EVFQKASKTL  200 (428)
Q Consensus       191 a~~~~~~~~~  200 (428)
                      ++..+|.++.
T Consensus       240 ~~~~~p~d~~  249 (280)
T PF13429_consen  240 ALKLNPDDPL  249 (280)
T ss_dssp             HHHHSTT-HH
T ss_pred             cccccccccc
Confidence            8888877665

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.97  E-value=2.9e-09  Score=78.56  Aligned_cols=64  Identities=25%  Similarity=0.258  Sum_probs=39.7

Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH
Q 014256          112 NRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQ  175 (428)
Q Consensus       112 nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~  175 (428)
                      .+|..++..|+|++|+..|++++..+|+++.+++.+|.++..+|++++|+..|++++.++|+++
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            4566666666666666666666666666666666666666666666666666666666666553

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.94  E-value=1.4e-08  Score=99.14  Aligned_cols=149  Identities=17%  Similarity=0.123  Sum_probs=129.3

Q ss_pred             ccCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHH
Q 014256           49 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE  127 (428)
Q Consensus        49 y~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~  127 (428)
                      |..|++++|.+.|.++|..+....++  ++++|..+..+|+.++|++||-+.-.+--+ +.+.+.+|.+|..+.+..+|+
T Consensus       501 f~ngd~dka~~~ykeal~ndasc~ea--lfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqai  578 (840)
T KOG2003|consen  501 FANGDLDKAAEFYKEALNNDASCTEA--LFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAI  578 (840)
T ss_pred             eecCcHHHHHHHHHHHHcCchHHHHH--HHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHH
Confidence            57899999999999999988766666  889999999999999999999988776555 888899999999999999999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHH----------HHHHHHHHHHHHHHHhchh
Q 014256          128 DDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK----------KQLAEVKSLYEKEVFQKAS  197 (428)
Q Consensus       128 ~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~----------~~l~~a~~~~~~a~~~~~~  197 (428)
                      +++.++..+-|+++..+..+|..|-+.|+-.+|.+++-...+..|.+.+..          .-.++++.+|+++-.+.|.
T Consensus       579 e~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~  658 (840)
T KOG2003|consen  579 ELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPN  658 (840)
T ss_pred             HHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCcc
Confidence            999999999999999999999999999999999999888888889887662          3356788888888777766


Q ss_pred             hh
Q 014256          198 KT  199 (428)
Q Consensus       198 ~~  199 (428)
                      ..
T Consensus       659 ~~  660 (840)
T KOG2003|consen  659 QS  660 (840)
T ss_pred             HH
Confidence            54

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.94  E-value=3.5e-09  Score=108.21  Aligned_cols=153  Identities=20%  Similarity=0.223  Sum_probs=125.1

Q ss_pred             hhcCCCccc-cCCCCcchHHHHHhhhhc--------CCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHcc--------
Q 014256           41 AKKPSPSGN-SYSRNYDPVSHISSSLMN--------EESTPDATSEKELGNECFKQKKFKEAIDCYSRSIAL--------  103 (428)
Q Consensus        41 a~~~~~~~y-~~g~~~~Ai~~~~~al~~--------~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~--------  103 (428)
                      ....++..| ..|+|+.|+..+..++.+        .|.  -+...+.+|..|...++|.+|+..|++++.+        
T Consensus       201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~--va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~  278 (508)
T KOG1840|consen  201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLV--VASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED  278 (508)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHH--HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence            344466667 899999999999999998        332  2333567999999999999999999999986        


Q ss_pred             CCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---
Q 014256          104 SPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLD--------DRYIKAYSRRATARKELGKLKESIEDSEFALRLE---  171 (428)
Q Consensus       104 ~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~--------p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~---  171 (428)
                      +|. +.++.|+|.+|.+.|+|++|..+|++|+++.        |.-...+.+++.++..++++++|...+.+++++.   
T Consensus       279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~  358 (508)
T KOG1840|consen  279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA  358 (508)
T ss_pred             CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence            233 6789999999999999999999999999774        3345678899999999999999999999999865   


Q ss_pred             --CCcHHH-------------HHHHHHHHHHHHHHHHhc
Q 014256          172 --PQNQEI-------------KKQLAEVKSLYEKEVFQK  195 (428)
Q Consensus       172 --P~~~~~-------------~~~l~~a~~~~~~a~~~~  195 (428)
                        +.++..             .+.+.+|..+|++++.+.
T Consensus       359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~  397 (508)
T KOG1840|consen  359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQIL  397 (508)
T ss_pred             ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence              233222             467888888998888766

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.94  E-value=4.9e-09  Score=77.29  Aligned_cols=64  Identities=22%  Similarity=0.306  Sum_probs=59.5

Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCH
Q 014256           78 KELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYI  141 (428)
Q Consensus        78 ~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~  141 (428)
                      +.+|..++..|+|++|+.+|++++..+|+ +.+++.+|.++..+|++++|+..|++++.++|+++
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            36899999999999999999999999998 99999999999999999999999999999999875

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.93  E-value=4.6e-09  Score=110.70  Aligned_cols=140  Identities=21%  Similarity=0.184  Sum_probs=122.4

Q ss_pred             CCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHH
Q 014256           51 YSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDD  129 (428)
Q Consensus        51 ~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~  129 (428)
                      .+.++.|+..|.++|..+|.+..|  -+.+|.++...|++.+|+..|.+..+.-.+ ..+|.|+|.||+.+|+|..|++.
T Consensus       625 kk~~~KAlq~y~kvL~~dpkN~yA--ANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqm  702 (1018)
T KOG2002|consen  625 KKHQEKALQLYGKVLRNDPKNMYA--ANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQM  702 (1018)
T ss_pred             HHHHHHHHHHHHHHHhcCcchhhh--ccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHH
Confidence            456788999999999999998776  669999999999999999999999887664 88999999999999999999999


Q ss_pred             HHHHHhcCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHH
Q 014256          130 CTEALNLDD--RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEV  192 (428)
Q Consensus       130 ~~~al~l~p--~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~~a~  192 (428)
                      |+.+++..-  +++..+..||.+++..|+|.+|...+..++.+.|.++.+.-++..+..-+...+
T Consensus       703 Ye~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~  767 (1018)
T KOG2002|consen  703 YENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESI  767 (1018)
T ss_pred             HHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHH
Confidence            999997653  678999999999999999999999999999999999888666555554444333

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.92  E-value=2.1e-08  Score=86.63  Aligned_cols=118  Identities=15%  Similarity=0.106  Sum_probs=101.7

Q ss_pred             cCCCCcchHHHHHhhhhcCCCC-chHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc----HHHHHHHHHHHHHhcCHH
Q 014256           50 SYSRNYDPVSHISSSLMNEEST-PDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQ  124 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~~-~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~nla~~~~~~~~~~  124 (428)
                      ..++...+...+..++...|+. ........+|..++..|+|++|+..|+.++...|+    ..+..++|.+++..|+|+
T Consensus        23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d  102 (145)
T PF09976_consen   23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD  102 (145)
T ss_pred             HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence            5677888888899999999887 34455788999999999999999999999998765    567889999999999999


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 014256          125 EAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFAL  168 (428)
Q Consensus       125 eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al  168 (428)
                      +|+..+.. +.-.+-.+.++..+|.++...|++++|+..|++++
T Consensus       103 ~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  103 EALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            99999966 34444557788899999999999999999999875

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.92  E-value=1.5e-09  Score=101.98  Aligned_cols=131  Identities=14%  Similarity=0.147  Sum_probs=115.8

Q ss_pred             cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHH
Q 014256           50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  128 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~  128 (428)
                      ..+++++|.++|..+++.+|.+.++.+  -+|..||-.++.+-|+.+|++.++..-. +.++.|+|.|.+-.++|+-++.
T Consensus       302 am~~~~~a~~lYk~vlk~~~~nvEaiA--cia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~  379 (478)
T KOG1129|consen  302 AMEQQEDALQLYKLVLKLHPINVEAIA--CIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLP  379 (478)
T ss_pred             HHHhHHHHHHHHHHHHhcCCccceeee--eeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHH
Confidence            678899999999999999998888744  7888899999999999999999998866 8999999999999999999999


Q ss_pred             HHHHHHhcCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 014256          129 DCTEALNLDD---RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLA  182 (428)
Q Consensus       129 ~~~~al~l~p---~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~  182 (428)
                      .|.+|+....   .-..+||++|.+....|++.-|...|+-+|.-+|++.++..++.
T Consensus       380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLa  436 (478)
T KOG1129|consen  380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLA  436 (478)
T ss_pred             HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHH
Confidence            9999997754   34678999999999999999999999999999999998855543

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.92  E-value=1.2e-08  Score=105.48  Aligned_cols=125  Identities=22%  Similarity=0.153  Sum_probs=114.5

Q ss_pred             cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHH
Q 014256           50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  128 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~  128 (428)
                      ..+..++|..++.++-.++|-....  |+..|..+...|++.+|.++|..++.++|+ ......+|.+++..|+-.-|..
T Consensus       662 ~~~~~~~a~~CL~Ea~~~~~l~~~~--~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~  739 (799)
T KOG4162|consen  662 LSGNDDEARSCLLEASKIDPLSASV--YYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEK  739 (799)
T ss_pred             hcCCchHHHHHHHHHHhcchhhHHH--HHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHH
Confidence            6777888888999999998765544  889999999999999999999999999999 8889999999999998888887


Q ss_pred             --HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q 014256          129 --DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE  176 (428)
Q Consensus       129 --~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~  176 (428)
                        ....++++||.++++|+.+|.++..+|+.++|.+.|..++++++.+|.
T Consensus       740 ~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV  789 (799)
T KOG4162|consen  740 RSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV  789 (799)
T ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence              999999999999999999999999999999999999999999988763

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.91  E-value=9.3e-09  Score=94.44  Aligned_cols=120  Identities=17%  Similarity=0.099  Sum_probs=111.8

Q ss_pred             CCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcC
Q 014256           45 SPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRR  122 (428)
Q Consensus        45 ~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~  122 (428)
                      +|... ..|++..|+..++++....|++..+  |..+|.+|.+.|+++.|...|.+++++.|+ +.++.|+|+.|+-.|+
T Consensus       106 ~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~--~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd  183 (257)
T COG5010         106 QGKNQIRNGNFGEAVSVLRKAARLAPTDWEA--WNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGD  183 (257)
T ss_pred             HHHHHHHhcchHHHHHHHHHHhccCCCChhh--hhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCC
Confidence            44444 8899999999999999999998888  779999999999999999999999999999 9999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 014256          123 FQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEF  166 (428)
Q Consensus       123 ~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~  166 (428)
                      ++.|...+..+...-+.+..+..+++.+....|++.+|.....+
T Consensus       184 ~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~  227 (257)
T COG5010         184 LEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ  227 (257)
T ss_pred             HHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence            99999999999999999999999999999999999999876544

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.89  E-value=1.2e-07  Score=86.65  Aligned_cols=147  Identities=17%  Similarity=0.091  Sum_probs=131.1

Q ss_pred             cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHH
Q 014256           50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  128 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~  128 (428)
                      ..|+.+.|..++++.-..-|+...+  ....|..+...|.|++|+++|+..++-+|. ..++-..-.+...+|+--+|++
T Consensus        64 d~~~~~lAq~C~~~L~~~fp~S~RV--~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk  141 (289)
T KOG3060|consen   64 DTGRDDLAQKCINQLRDRFPGSKRV--GKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIK  141 (289)
T ss_pred             HhcchHHHHHHHHHHHHhCCCChhH--HHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHH
Confidence            6788899999999988877888777  668899999999999999999999999998 6666666667778899999999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH-------------HHHHHHHHHHHHHHHHhc
Q 014256          129 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI-------------KKQLAEVKSLYEKEVFQK  195 (428)
Q Consensus       129 ~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~-------------~~~l~~a~~~~~~a~~~~  195 (428)
                      ....-+...+.+..+|..++.+|...|+|+.|.-.+++++-+.|.++..             ..++.-+..+|.++++++
T Consensus       142 ~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~  221 (289)
T KOG3060|consen  142 ELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN  221 (289)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999999999999999999998865             456677888999999998


Q ss_pred             hhh
Q 014256          196 ASK  198 (428)
Q Consensus       196 ~~~  198 (428)
                      |.+
T Consensus       222 ~~~  224 (289)
T KOG3060|consen  222 PKN  224 (289)
T ss_pred             hHh
Confidence            744

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.89  E-value=3.1e-08  Score=93.95  Aligned_cols=103  Identities=8%  Similarity=0.015  Sum_probs=93.8

Q ss_pred             HHHHHHHHHH-HHhcCHHHHHHHHHHHHccCCc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---HHHHHH
Q 014256           75 TSEKELGNEC-FKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY---IKAYSR  146 (428)
Q Consensus        75 ~~~~~lg~~~-~~~g~~~~Ai~~y~~al~~~p~----~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~---~~a~~~  146 (428)
                      ..++..|..+ ++.|+|++|+..|+..+..+|+    +.+++.+|.+|+..|+|++|+..|.+++...|++   +.+++.
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k  222 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK  222 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence            3467888876 6679999999999999999997    5789999999999999999999999999998874   788999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH
Q 014256          147 RATARKELGKLKESIEDSEFALRLEPQNQEI  177 (428)
Q Consensus       147 lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~  177 (428)
                      +|.++..+|++++|...|+++++..|+...+
T Consensus       223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a  253 (263)
T PRK10803        223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA  253 (263)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence            9999999999999999999999999998764

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.88  E-value=3.5e-09  Score=82.50  Aligned_cols=82  Identities=22%  Similarity=0.284  Sum_probs=70.1

Q ss_pred             CCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHH
Q 014256           51 YSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDD  129 (428)
Q Consensus        51 ~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~  129 (428)
                      .|+|+.|+..|++++...|.+.....++.+|.+|++.|+|++|+..+++ +..++. ....+.+|.|++++|+|++|+..
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~   80 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA   80 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            5889999999999999999643455577899999999999999999999 777776 67777789999999999999999


Q ss_pred             HHHH
Q 014256          130 CTEA  133 (428)
Q Consensus       130 ~~~a  133 (428)
                      ++++
T Consensus        81 l~~~   84 (84)
T PF12895_consen   81 LEKA   84 (84)
T ss_dssp             HHHH
T ss_pred             HhcC
Confidence            9875

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.88  E-value=1.6e-08  Score=100.12  Aligned_cols=122  Identities=17%  Similarity=0.050  Sum_probs=100.8

Q ss_pred             cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHH----ccCCc-HHHHHHHHHHHHHhcCHH
Q 014256           50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSI----ALSPT-AVAYANRAMAYLKLRRFQ  124 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al----~~~p~-~~~~~nla~~~~~~~~~~  124 (428)
                      ..|++++|...+++++..+|.+..+  +.. +..++..|++..+...+.+++    ..+|. ...+..+|.++..+|+++
T Consensus        55 ~~g~~~~A~~~~~~~l~~~P~~~~a--~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~  131 (355)
T cd05804          55 IAGDLPKALALLEQLLDDYPRDLLA--LKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYD  131 (355)
T ss_pred             HcCCHHHHHHHHHHHHHHCCCcHHH--HHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHH
Confidence            7899999999999999999987755  333 556666555554444444444    34455 567788999999999999


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 014256          125 EAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN  174 (428)
Q Consensus       125 eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~  174 (428)
                      +|+..|++++.++|+++.++..+|.++...|++++|+..+.+++...|.+
T Consensus       132 ~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~  181 (355)
T cd05804         132 RAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCS  181 (355)
T ss_pred             HHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCC
Confidence            99999999999999999999999999999999999999999999998753

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.86  E-value=2.2e-08  Score=94.22  Aligned_cols=133  Identities=18%  Similarity=0.140  Sum_probs=115.2

Q ss_pred             hhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc------HHHHHHH
Q 014256           41 AKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT------AVAYANR  113 (428)
Q Consensus        41 a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~------~~~~~nl  113 (428)
                      |+..+|.-| ..|-+|.|...|.........-..|  +..+-++|-...+|++||++-.+...+.+.      +.+|..+
T Consensus       109 Al~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~A--lqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCEL  186 (389)
T COG2956         109 ALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGA--LQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCEL  186 (389)
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHH--HHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHH
Confidence            445555556 7888899999988887755433445  668889999999999999999999988865      6789999


Q ss_pred             HHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH
Q 014256          114 AMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQ  175 (428)
Q Consensus       114 a~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~  175 (428)
                      |..++...+.+.|...+.+|+..||+++.+-..+|.+....|+|+.|+..++.+++.+|...
T Consensus       187 Aq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl  248 (389)
T COG2956         187 AQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYL  248 (389)
T ss_pred             HHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHH
Confidence            99999999999999999999999999999999999999999999999999999999999763

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.84  E-value=4.3e-08  Score=94.92  Aligned_cols=165  Identities=15%  Similarity=0.092  Sum_probs=122.0

Q ss_pred             cChhhhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHH--------------------------------HHHHHH
Q 014256           36 SSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATS--------------------------------EKELGN   82 (428)
Q Consensus        36 ~~~~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~--------------------------------~~~lg~   82 (428)
                      ++....+..++.++ ..|++++|+..|+++..++|.+..++.                                |+--|.
T Consensus       229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~  308 (564)
T KOG1174|consen  229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQ  308 (564)
T ss_pred             CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhh
Confidence            44455667777777 899999999999999999998765543                                333445


Q ss_pred             HHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 014256           83 ECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESI  161 (428)
Q Consensus        83 ~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~  161 (428)
                      .++..++|..|+.+-.++|..+|. ..++...|..++.+++.++|+-.|..|..+.|.....|-.+-.+|...|++.+|.
T Consensus       309 ~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~  388 (564)
T KOG1174|consen  309 LLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEAN  388 (564)
T ss_pred             hhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHH
Confidence            555566777777777777777776 6677777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHhhCCCcHHHHHH------------HHHHHHHHHHHHHhchhhhH
Q 014256          162 EDSEFALRLEPQNQEIKKQ------------LAEVKSLYEKEVFQKASKTL  200 (428)
Q Consensus       162 ~~~~~al~l~P~~~~~~~~------------l~~a~~~~~~a~~~~~~~~~  200 (428)
                      ...+.+++.-|.+......            .++|+..+++++.++|....
T Consensus       389 ~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~  439 (564)
T KOG1174|consen  389 ALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTP  439 (564)
T ss_pred             HHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHH
Confidence            7777777777777665332            35777777777777776543

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.83  E-value=1.4e-08  Score=104.29  Aligned_cols=143  Identities=19%  Similarity=0.180  Sum_probs=115.7

Q ss_pred             CCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHH
Q 014256           52 SRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDC  130 (428)
Q Consensus        52 g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~  130 (428)
                      ||.-.=-.+|+++..+. +...+.+...+|...+..++|.++..+++..++++|- ...|+++|.|.+++++++.|..+|
T Consensus       464 GDv~~d~s~yEkawEls-n~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF  542 (777)
T KOG1128|consen  464 GDVLHDPSLYEKAWELS-NYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAF  542 (777)
T ss_pred             hhhccChHHHHHHHHHh-hhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHH
Confidence            33333344444444443 1122333456666677789999999999999999998 899999999999999999999999


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH----------HHHHHHHHHHHHHHHHhc
Q 014256          131 TEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI----------KKQLAEVKSLYEKEVFQK  195 (428)
Q Consensus       131 ~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~----------~~~l~~a~~~~~~a~~~~  195 (428)
                      .+++.++|++..+|.|++.+|..+|+-.+|...+.++++-+-++..+          .+++++|+.+|.+.+.++
T Consensus       543 ~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~  617 (777)
T KOG1128|consen  543 HRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR  617 (777)
T ss_pred             HHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999988655443          567888888888777655

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.82  E-value=8e-08  Score=101.58  Aligned_cols=151  Identities=17%  Similarity=0.140  Sum_probs=122.0

Q ss_pred             cCCCCcchHHHHHhhhhcCCCCchHHH-----------------------------------HHHHHHHHHHhcCHHHHH
Q 014256           50 SYSRNYDPVSHISSSLMNEESTPDATS-----------------------------------EKELGNECFKQKKFKEAI   94 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~-----------------------------------~~~lg~~~~~~g~~~~Ai   94 (428)
                      +.|+.+.|+..|.+++.++|.+..+..                                   +..+++-||-.|+|..+.
T Consensus       211 kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~  290 (1018)
T KOG2002|consen  211 KLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVW  290 (1018)
T ss_pred             hccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHH
Confidence            677888888888888887776543322                                   566788888889999999


Q ss_pred             HHHHHHHccCCc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 014256           95 DCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY-IKAYSRRATARKELGKLKESIEDSEFALR  169 (428)
Q Consensus        95 ~~y~~al~~~p~----~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~-~~a~~~lg~~~~~lg~~~eA~~~~~~al~  169 (428)
                      ..+..++...-.    +..++.+|.+|..+|+|++|..+|.+++..++++ .-+++.+|..|...|+++.|...|++++.
T Consensus       291 ~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k  370 (1018)
T KOG2002|consen  291 HLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLK  370 (1018)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHH
Confidence            998888876533    6679999999999999999999999999999988 88899999999999999999999999999


Q ss_pred             hCCCcHHHHH--------------HHHHHHHHHHHHHHhchhhhH
Q 014256          170 LEPQNQEIKK--------------QLAEVKSLYEKEVFQKASKTL  200 (428)
Q Consensus       170 l~P~~~~~~~--------------~l~~a~~~~~~a~~~~~~~~~  200 (428)
                      ..|++.+...              ..+.|..++.+++...|....
T Consensus       371 ~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~  415 (1018)
T KOG2002|consen  371 QLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSE  415 (1018)
T ss_pred             hCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHH
Confidence            9999887621              335666777777776655544

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.82  E-value=1.4e-07  Score=78.47  Aligned_cols=107  Identities=25%  Similarity=0.114  Sum_probs=92.5

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHccCCc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC---CHHHHHHHHH
Q 014256           77 EKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDR---YIKAYSRRAT  149 (428)
Q Consensus        77 ~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~---~~~a~~~lg~  149 (428)
                      ++++|.++-..|+.++|+.+|++++.....    ..++.++|.++..+|++++|+..+++++...|+   +..+...++.
T Consensus         4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al   83 (120)
T PF12688_consen    4 LYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLAL   83 (120)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHH
Confidence            789999999999999999999999997644    678999999999999999999999999999888   7788888999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHH
Q 014256          150 ARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYE  189 (428)
Q Consensus       150 ~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~  189 (428)
                      ++..+|++++|+..+-.++.-.      ...+.+++..|.
T Consensus        84 ~L~~~gr~~eAl~~~l~~la~~------~~~y~ra~~~ya  117 (120)
T PF12688_consen   84 ALYNLGRPKEALEWLLEALAET------LPRYRRAIRFYA  117 (120)
T ss_pred             HHHHCCCHHHHHHHHHHHHHHH------HHHHHHHHHHHH
Confidence            9999999999999998887522      125566655553

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.81  E-value=1.3e-07  Score=91.72  Aligned_cols=160  Identities=16%  Similarity=0.131  Sum_probs=136.3

Q ss_pred             hcCCCccccCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHh
Q 014256           42 KKPSPSGNSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKL  120 (428)
Q Consensus        42 ~~~~~~~y~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~  120 (428)
                      +......|..+++..|+.+-.+++..+|++..+  +...|+.+...|+.++|+-.|+.++.+.|. -..|-.+-.||+..
T Consensus       304 fV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~a--lilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~  381 (564)
T KOG1174|consen  304 FVHAQLLYDEKKFERALNFVEKCIDSEPRNHEA--LILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQ  381 (564)
T ss_pred             hhhhhhhhhhhhHHHHHHHHHHHhccCcccchH--HHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhh
Confidence            344444567889999999999999999998888  668899999999999999999999999998 77888888888888


Q ss_pred             cCHH------------------------------------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 014256          121 RRFQ------------------------------------EAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDS  164 (428)
Q Consensus       121 ~~~~------------------------------------eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~  164 (428)
                      |++.                                    +|...+++++++.|.+..+...+|..+..-|++..++..+
T Consensus       382 ~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LL  461 (564)
T KOG1174|consen  382 KRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLL  461 (564)
T ss_pred             chHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHH
Confidence            8755                                    4566677777888999999999999999999999999999


Q ss_pred             HHHHhhCCCcHH---------HHHHHHHHHHHHHHHHHhchhhhHhhh
Q 014256          165 EFALRLEPQNQE---------IKKQLAEVKSLYEKEVFQKASKTLEKY  203 (428)
Q Consensus       165 ~~al~l~P~~~~---------~~~~l~~a~~~~~~a~~~~~~~~~~~~  203 (428)
                      ++.|...|+..-         +.++++++...|..++.++|.+.....
T Consensus       462 e~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~  509 (564)
T KOG1174|consen  462 EKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLR  509 (564)
T ss_pred             HHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHH
Confidence            999999987642         367899999999999999998765433

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.80  E-value=1.9e-08  Score=102.79  Aligned_cols=136  Identities=22%  Similarity=0.217  Sum_probs=114.0

Q ss_pred             cChhhhhcCCCccc-cCCCCcchHHHHHhhhhcCC------CCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccC----
Q 014256           36 SSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEE------STPDATSEKELGNECFKQKKFKEAIDCYSRSIALS----  104 (428)
Q Consensus        36 ~~~~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p------~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~----  104 (428)
                      +.+...+..++..| ..+++.+|+..|++++.+-.      +...+..+.++|..|.+.|+|++|..++.+++++.    
T Consensus       238 l~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~  317 (508)
T KOG1840|consen  238 LVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLL  317 (508)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhh
Confidence            33444455677778 89999999999999998732      22345568999999999999999999999999873    


Q ss_pred             ----Cc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 014256          105 ----PT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLD--------DRYIKAYSRRATARKELGKLKESIEDSEFALRLE  171 (428)
Q Consensus       105 ----p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~--------p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~  171 (428)
                          |. +..+.+++..+..++++++|+..+.+++++.        +.-++.+.++|.+|...|+|++|...|++++.+.
T Consensus       318 ~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~  397 (508)
T KOG1840|consen  318 GASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQIL  397 (508)
T ss_pred             ccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence                22 5678999999999999999999999998763        2346789999999999999999999999999875

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.80  E-value=2.7e-08  Score=88.47  Aligned_cols=116  Identities=20%  Similarity=0.199  Sum_probs=97.2

Q ss_pred             hhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCc-hHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHH
Q 014256           40 SAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTP-DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMA  116 (428)
Q Consensus        40 ~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~-~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~  116 (428)
                      .++..+|..| ..|++++|+.+|++++...|+.. .+..+..+|.++...|+|++|+.+|.+++..+|. ...+.++|.+
T Consensus        36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~  115 (172)
T PRK02603         36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI  115 (172)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence            3445566666 88999999999999998876543 2456889999999999999999999999999998 8889999999


Q ss_pred             HHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH
Q 014256          117 YLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQ  175 (428)
Q Consensus       117 ~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~  175 (428)
                      |..+|+...+...+..++.                    .+.+|.+.+++++.++|++.
T Consensus       116 ~~~~g~~~~a~~~~~~A~~--------------------~~~~A~~~~~~a~~~~p~~~  154 (172)
T PRK02603        116 YHKRGEKAEEAGDQDEAEA--------------------LFDKAAEYWKQAIRLAPNNY  154 (172)
T ss_pred             HHHcCChHhHhhCHHHHHH--------------------HHHHHHHHHHHHHhhCchhH
Confidence            9999998888777666643                    36788889999999998873

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.79  E-value=7.4e-08  Score=99.90  Aligned_cols=124  Identities=15%  Similarity=0.093  Sum_probs=104.4

Q ss_pred             CCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHh--------cCHHHHHHHHHHHHcc--CCc-HHHHHHHHHHHHH
Q 014256           51 YSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQ--------KKFKEAIDCYSRSIAL--SPT-AVAYANRAMAYLK  119 (428)
Q Consensus        51 ~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~--------g~~~~Ai~~y~~al~~--~p~-~~~~~nla~~~~~  119 (428)
                      .++...|+.+|+++++.+|++..+.+  .++.++...        ++...+.....+++.+  +|. +.+|..+|..+..
T Consensus       355 ~~~~~~A~~lle~Ai~ldP~~a~a~A--~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~  432 (517)
T PRK10153        355 AKSLNKASDLLEEILKSEPDFTYAQA--EKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALV  432 (517)
T ss_pred             HHHHHHHHHHHHHHHHhCCCcHHHHH--HHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHh
Confidence            34577899999999999999987754  556655443        2355667777776665  454 7889999999999


Q ss_pred             hcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH
Q 014256          120 LRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI  177 (428)
Q Consensus       120 ~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~  177 (428)
                      .|++++|...+++|+.++| +..+|..+|.++...|++++|+..|+++++++|.++..
T Consensus       433 ~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~  489 (517)
T PRK10153        433 KGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL  489 (517)
T ss_pred             cCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence            9999999999999999999 58899999999999999999999999999999998754

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.78  E-value=1.1e-07  Score=78.40  Aligned_cols=99  Identities=25%  Similarity=0.269  Sum_probs=89.9

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC----HHHHHHHHHH
Q 014256           76 SEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY----IKAYSRRATA  150 (428)
Q Consensus        76 ~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~----~~a~~~lg~~  150 (428)
                      .+-..|..+...|+.+.|++.|.+++.+.|. +.+|+|++.++.-+|+.++|++++++|+++....    ..+|..+|.+
T Consensus        45 ~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~l  124 (175)
T KOG4555|consen   45 ELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLL  124 (175)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence            3556788899999999999999999999998 9999999999999999999999999999997654    4579999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCc
Q 014256          151 RKELGKLKESIEDSEFALRLEPQN  174 (428)
Q Consensus       151 ~~~lg~~~eA~~~~~~al~l~P~~  174 (428)
                      |..+|+-+.|..+|+.+-++-...
T Consensus       125 yRl~g~dd~AR~DFe~AA~LGS~F  148 (175)
T KOG4555|consen  125 YRLLGNDDAARADFEAAAQLGSKF  148 (175)
T ss_pred             HHHhCchHHHHHhHHHHHHhCCHH
Confidence            999999999999999999886543

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.78  E-value=1.4e-07  Score=102.48  Aligned_cols=134  Identities=14%  Similarity=0.128  Sum_probs=114.5

Q ss_pred             cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHH
Q 014256           50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  128 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~  128 (428)
                      ..|++++|+.++++++  +|.+.....+..+|..+...|+|++|++.|+++++.+|+ +.++..++..|...+++++|+.
T Consensus        80 ~~G~~~~A~~~~eka~--~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~  157 (822)
T PRK14574         80 WAGRDQEVIDVYERYQ--SSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLK  157 (822)
T ss_pred             HcCCcHHHHHHHHHhc--cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHH
Confidence            6699999999999999  554545545667788999999999999999999999999 8888889999999999999999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 014256          129 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKS  186 (428)
Q Consensus       129 ~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~  186 (428)
                      .+.+++..+|.+... ..++.++...+++.+|+..+++++.++|++.++...+-.+..
T Consensus       158 ~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~  214 (822)
T PRK14574        158 QATELAERDPTVQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQ  214 (822)
T ss_pred             HHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            999999999996554 555666666888878999999999999999988655554443

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.77  E-value=2.3e-07  Score=78.58  Aligned_cols=104  Identities=20%  Similarity=0.192  Sum_probs=92.7

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCH---HHHHH
Q 014256           74 ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYI---KAYSR  146 (428)
Q Consensus        74 a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~---~a~~~  146 (428)
                      ...++..|...++.|+|.+|++.|+.+....|.    ..+...+|.+|++.++|++|+..+++-|+++|.++   .+++.
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~   89 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM   89 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence            445889999999999999999999999999886    67899999999999999999999999999999875   57999


Q ss_pred             HHHHHHHcCC---------------HHHHHHHHHHHHhhCCCcHHH
Q 014256          147 RATARKELGK---------------LKESIEDSEFALRLEPQNQEI  177 (428)
Q Consensus       147 lg~~~~~lg~---------------~~eA~~~~~~al~l~P~~~~~  177 (428)
                      +|.++..+..               ...|..+|+.+++..|++.-+
T Consensus        90 ~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya  135 (142)
T PF13512_consen   90 RGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA  135 (142)
T ss_pred             HHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence            9999999876               778888888888888877654

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.77  E-value=3.9e-08  Score=80.93  Aligned_cols=95  Identities=14%  Similarity=0.130  Sum_probs=84.8

Q ss_pred             cCCCCcchHHHHHhhhhcCCCCch-HHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc----HHHHHHHHHHHHHhcCHH
Q 014256           50 SYSRNYDPVSHISSSLMNEESTPD-ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQ  124 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~~~~-a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~nla~~~~~~~~~~  124 (428)
                      ..|++++|+..|.+++..+|++.. ...++.+|.+++..|+|++|+.+|.+++..+|+    +.++.++|.++.++|+++
T Consensus        14 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~   93 (119)
T TIGR02795        14 KAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKE   93 (119)
T ss_pred             HcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChH
Confidence            789999999999999998886532 334779999999999999999999999999876    568999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCHHHH
Q 014256          125 EAEDDCTEALNLDDRYIKAY  144 (428)
Q Consensus       125 eA~~~~~~al~l~p~~~~a~  144 (428)
                      +|+..+.+++...|++..+.
T Consensus        94 ~A~~~~~~~~~~~p~~~~~~  113 (119)
T TIGR02795        94 KAKATLQQVIKRYPGSSAAK  113 (119)
T ss_pred             HHHHHHHHHHHHCcCChhHH
Confidence            99999999999999987643

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.77  E-value=6.3e-08  Score=104.52  Aligned_cols=154  Identities=16%  Similarity=0.054  Sum_probs=124.4

Q ss_pred             ccChhhhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-H-----
Q 014256           35 SSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-A-----  107 (428)
Q Consensus        35 ~~~~~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~-----  107 (428)
                      .+.+..++..+...| ..+++++|+..+..++...|+....  ++.+|.++++.+++.+|...  .++...+. .     
T Consensus        27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~--yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~v  102 (906)
T PRK14720         27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISA--LYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIV  102 (906)
T ss_pred             CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceeh--HHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHH
Confidence            356667777777888 9999999999999999999998877  77899999998887776655  44444333 3     


Q ss_pred             --------------HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 014256          108 --------------VAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQ  173 (428)
Q Consensus       108 --------------~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~  173 (428)
                                    .+++.+|.||-++|++++|...|++++++||+|+.++.++|..|... +.++|+..+.+|+...-+
T Consensus       103 e~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~  181 (906)
T PRK14720        103 EHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIK  181 (906)
T ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHh
Confidence                          78899999999999999999999999999999999999999999999 999999999999987322


Q ss_pred             cHHHHHHHHHHHHHHHHHHHhchh
Q 014256          174 NQEIKKQLAEVKSLYEKEVFQKAS  197 (428)
Q Consensus       174 ~~~~~~~l~~a~~~~~~a~~~~~~  197 (428)
                          ..++..+..++.+.+..+|.
T Consensus       182 ----~kq~~~~~e~W~k~~~~~~~  201 (906)
T PRK14720        182 ----KKQYVGIEEIWSKLVHYNSD  201 (906)
T ss_pred             ----hhcchHHHHHHHHHHhcCcc
Confidence                22444555555555544443

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.74  E-value=3.3e-08  Score=76.05  Aligned_cols=88  Identities=28%  Similarity=0.457  Sum_probs=81.4

Q ss_pred             cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHH
Q 014256           50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  128 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~  128 (428)
                      ..|++++|+..|.+++...|....+  +..+|.++...|++++|+.+|.+++...|. ..++..+|.++...|+++.|..
T Consensus        12 ~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   89 (100)
T cd00189          12 KLGDYDEALEYYEKALELDPDNADA--YYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALE   89 (100)
T ss_pred             HHhcHHHHHHHHHHHHhcCCccHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHH
Confidence            6789999999999999999887655  779999999999999999999999999988 7789999999999999999999


Q ss_pred             HHHHHHhcCCC
Q 014256          129 DCTEALNLDDR  139 (428)
Q Consensus       129 ~~~~al~l~p~  139 (428)
                      .+.+++..+|.
T Consensus        90 ~~~~~~~~~~~  100 (100)
T cd00189          90 AYEKALELDPN  100 (100)
T ss_pred             HHHHHHccCCC
Confidence            99999998874

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.72  E-value=3.1e-07  Score=96.61  Aligned_cols=123  Identities=17%  Similarity=0.189  Sum_probs=112.5

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 014256           74 ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARK  152 (428)
Q Consensus        74 a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~  152 (428)
                      +..+...||.++..|++++|...+.++|..+|. +.+|+.+|.+|..+|+.+.|....-.|-.++|.+...|.+++....
T Consensus       139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~  218 (895)
T KOG2076|consen  139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSE  218 (895)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence            455788999999999999999999999999999 8999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCcHHH----------HHHHHHHHHHHHHHHHhch
Q 014256          153 ELGKLKESIEDSEFALRLEPQNQEI----------KKQLAEVKSLYEKEVFQKA  196 (428)
Q Consensus       153 ~lg~~~eA~~~~~~al~l~P~~~~~----------~~~l~~a~~~~~~a~~~~~  196 (428)
                      .+|++.+|.-.|.+|++.+|.+-+.          .+.+..|..-|.+.+...|
T Consensus       219 ~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p  272 (895)
T KOG2076|consen  219 QLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP  272 (895)
T ss_pred             hcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence            9999999999999999999998765          3556677777777777776

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.72  E-value=5.7e-08  Score=94.92  Aligned_cols=130  Identities=18%  Similarity=0.108  Sum_probs=114.4

Q ss_pred             CCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHH
Q 014256           51 YSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDD  129 (428)
Q Consensus        51 ~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~  129 (428)
                      -.++.+|-.+-..++.++.-++.+  +-+.|++.|..|++++|.+.|.+++.-+.. ..+.+|+|..+..+|++++|+++
T Consensus       469 gk~~~~aqqyad~aln~dryn~~a--~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~  546 (840)
T KOG2003|consen  469 GKDFADAQQYADIALNIDRYNAAA--LTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDC  546 (840)
T ss_pred             ccchhHHHHHHHHHhcccccCHHH--hhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHH
Confidence            457888888888999888777777  559999999999999999999999988777 78899999999999999999999


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 014256          130 CTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLA  182 (428)
Q Consensus       130 ~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~  182 (428)
                      |-+.-.+--+++.+++.++.+|..+.+..+|++.+.++..+-|+++.+...+.
T Consensus       547 f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~  599 (840)
T KOG2003|consen  547 FLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLA  599 (840)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHH
Confidence            99888888888999999999999999999999999999999999998855443

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.71  E-value=1.2e-07  Score=83.84  Aligned_cols=94  Identities=26%  Similarity=0.288  Sum_probs=84.7

Q ss_pred             ccCCCCcchHHHHHhhhhcCCCCc---hHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHH
Q 014256           49 NSYSRNYDPVSHISSSLMNEESTP---DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQ  124 (428)
Q Consensus        49 y~~g~~~~Ai~~~~~al~~~p~~~---~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~  124 (428)
                      |..|+|.+|..-|..+|...|...   .+..+.++|.+++++++++.||..+.++|+++|. ..+.-.||.+|-++.+|+
T Consensus       106 F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~e  185 (271)
T KOG4234|consen  106 FKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYE  185 (271)
T ss_pred             hhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHH
Confidence            467888889999999999988764   3556889999999999999999999999999998 778889999999999999


Q ss_pred             HHHHHHHHHHhcCCCCHH
Q 014256          125 EAEDDCTEALNLDDRYIK  142 (428)
Q Consensus       125 eA~~~~~~al~l~p~~~~  142 (428)
                      +|+.+|.+.+.++|....
T Consensus       186 ealeDyKki~E~dPs~~e  203 (271)
T KOG4234|consen  186 EALEDYKKILESDPSRRE  203 (271)
T ss_pred             HHHHHHHHHHHhCcchHH
Confidence            999999999999998753

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=98.70  E-value=1.7e-07  Score=95.40  Aligned_cols=151  Identities=13%  Similarity=0.084  Sum_probs=136.9

Q ss_pred             cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCcHHHHHHHHHHHHHhcCHHHHHHH
Q 014256           50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDD  129 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~~~~~~nla~~~~~~~~~~eA~~~  129 (428)
                      ..|+...|...+..++..+|+..+.  |...-.+.+...+|+.|...+.++....|...+|+.-+.....+++.++|++.
T Consensus       596 ~agdv~~ar~il~~af~~~pnseei--wlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rl  673 (913)
T KOG0495|consen  596 KAGDVPAARVILDQAFEANPNSEEI--WLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRL  673 (913)
T ss_pred             hcCCcHHHHHHHHHHHHhCCCcHHH--HHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHH
Confidence            6799999999999999999997777  77778888889999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHH----------HHHHHHHHHHHHHHHhchhhh
Q 014256          130 CTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK----------KQLAEVKSLYEKEVFQKASKT  199 (428)
Q Consensus       130 ~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~----------~~l~~a~~~~~~a~~~~~~~~  199 (428)
                      |+++++..|++.+.|..+|.++..+++.+.|...|...++..|+....+          +.+-.|...+.++...+|.+.
T Consensus       674 lEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~  753 (913)
T KOG0495|consen  674 LEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNA  753 (913)
T ss_pred             HHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcc
Confidence            9999999999999999999999999999999999999999999988763          355567778888888888877


Q ss_pred             Hhh
Q 014256          200 LEK  202 (428)
Q Consensus       200 ~~~  202 (428)
                      .-+
T Consensus       754 ~lw  756 (913)
T KOG0495|consen  754 LLW  756 (913)
T ss_pred             hhH
Confidence            643

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.68  E-value=9.7e-08  Score=71.94  Aligned_cols=63  Identities=32%  Similarity=0.463  Sum_probs=34.1

Q ss_pred             HHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH
Q 014256          115 MAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI  177 (428)
Q Consensus       115 ~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~  177 (428)
                      .+|+..++|++|+..+++++.++|+++.+++.+|.++..+|++.+|+.+|++++++.|++..+
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~   65 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA   65 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence            344555555555555555555555555555555555555555555555555555555554443

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.68  E-value=3.8e-07  Score=84.95  Aligned_cols=102  Identities=14%  Similarity=0.127  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHccCCc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---HHHHHHHHH
Q 014256           77 EKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY---IKAYSRRAT  149 (428)
Q Consensus        77 ~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~---~~a~~~lg~  149 (428)
                      .|+.+..+++.|+|..|...|..-+...|+    +.+++.+|.+++.+|+|+.|...|..+++-.|++   +.+++.+|.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            789999999999999999999999999998    7899999999999999999999999999998876   577999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCcHHHH
Q 014256          150 ARKELGKLKESIEDSEFALRLEPQNQEIK  178 (428)
Q Consensus       150 ~~~~lg~~~eA~~~~~~al~l~P~~~~~~  178 (428)
                      +..++|+-++|...|+++++..|+...+.
T Consensus       224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~  252 (262)
T COG1729         224 SLGRLGNTDEACATLQQVIKRYPGTDAAK  252 (262)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence            99999999999999999999999987764

>PRK11906 transcriptional regulator; Provisional

Probab=98.68  E-value=3.3e-07  Score=91.27  Aligned_cols=121  Identities=12%  Similarity=0.006  Sum_probs=108.7

Q ss_pred             CCcchHHHHHhhh---hcCCCCchHHHHHHHHHHHHHh---------cCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHH
Q 014256           53 RNYDPVSHISSSL---MNEESTPDATSEKELGNECFKQ---------KKFKEAIDCYSRSIALSPT-AVAYANRAMAYLK  119 (428)
Q Consensus        53 ~~~~Ai~~~~~al---~~~p~~~~a~~~~~lg~~~~~~---------g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~  119 (428)
                      ..+.|..+|.+++   .++|....+  +..++.|++..         .+-.+|.....++++++|. +.+...+|.++..
T Consensus       273 ~~~~Al~lf~ra~~~~~ldp~~a~a--~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~  350 (458)
T PRK11906        273 SIYRAMTIFDRLQNKSDIQTLKTEC--YCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGL  350 (458)
T ss_pred             HHHHHHHHHHHHhhcccCCcccHHH--HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence            4567889999999   999998877  44777777664         3466899999999999998 9999999999999


Q ss_pred             hcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH
Q 014256          120 LRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQ  175 (428)
Q Consensus       120 ~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~  175 (428)
                      .++++.|...|++|+.++|+.+.+|+.+|.++...|+.++|...++++++++|.-.
T Consensus       351 ~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~  406 (458)
T PRK11906        351 SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRR  406 (458)
T ss_pred             hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhh
Confidence            99999999999999999999999999999999999999999999999999999644

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.68  E-value=9.8e-07  Score=80.72  Aligned_cols=136  Identities=19%  Similarity=0.196  Sum_probs=106.1

Q ss_pred             ccCCCCcchHHHHHhhhhcCCCCch-HHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc----HHHHHHHHHHHHHhc--
Q 014256           49 NSYSRNYDPVSHISSSLMNEESTPD-ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLR--  121 (428)
Q Consensus        49 y~~g~~~~Ai~~~~~al~~~p~~~~-a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~nla~~~~~~~--  121 (428)
                      +..|+|.+|+..|++++...|.... ..+.+.+|.++++.|+|..|+..|++.+...|+    +.+++.+|.+++.+.  
T Consensus        16 ~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~   95 (203)
T PF13525_consen   16 LQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPG   95 (203)
T ss_dssp             HHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCcc
Confidence            4789999999999999999886542 344789999999999999999999999999987    678999999987764  


Q ss_pred             ---------CHHHHHHHHHHHHhcCCCCHHH-----------------HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH
Q 014256          122 ---------RFQEAEDDCTEALNLDDRYIKA-----------------YSRRATARKELGKLKESIEDSEFALRLEPQNQ  175 (428)
Q Consensus       122 ---------~~~eA~~~~~~al~l~p~~~~a-----------------~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~  175 (428)
                               ...+|+..|+..+...|+...+                 -+..|..|.+.|.|..|+..++.+++-.|+..
T Consensus        96 ~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~  175 (203)
T PF13525_consen   96 ILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTP  175 (203)
T ss_dssp             HH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSH
T ss_pred             chhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCc
Confidence                     3458999999999999986321                 23357788889999999999999999999988


Q ss_pred             HHHHHHHHH
Q 014256          176 EIKKQLAEV  184 (428)
Q Consensus       176 ~~~~~l~~a  184 (428)
                      ....-+...
T Consensus       176 ~~~~al~~l  184 (203)
T PF13525_consen  176 AAEEALARL  184 (203)
T ss_dssp             HHHHHHHHH
T ss_pred             hHHHHHHHH
Confidence            764433333

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.66  E-value=2.5e-07  Score=91.58  Aligned_cols=160  Identities=11%  Similarity=0.059  Sum_probs=122.3

Q ss_pred             cChhhhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCch-HHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHH
Q 014256           36 SSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPD-ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYAN  112 (428)
Q Consensus        36 ~~~~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~-a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~n  112 (428)
                      +++..++...+..+ ..|+++.+...+.++....+.... .......|..++..|++++|+..+.+++..+|+ ..++..
T Consensus         3 p~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~   82 (355)
T cd05804           3 PDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL   82 (355)
T ss_pred             CccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH
Confidence            45555555556555 678889999999998888775532 334667899999999999999999999999998 656554


Q ss_pred             HHHHHHHhcCHHHHHHHHHHHH----hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH----------H
Q 014256          113 RAMAYLKLRRFQEAEDDCTEAL----NLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI----------K  178 (428)
Q Consensus       113 la~~~~~~~~~~eA~~~~~~al----~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~----------~  178 (428)
                       +..+...+++..+.....+++    ..+|....++..+|.++...|++++|...+++++.+.|++..+          .
T Consensus        83 -~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~  161 (355)
T cd05804          83 -HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQ  161 (355)
T ss_pred             -hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc
Confidence             666666555444444444444    5677888888899999999999999999999999999998765          3


Q ss_pred             HHHHHHHHHHHHHHHhch
Q 014256          179 KQLAEVKSLYEKEVFQKA  196 (428)
Q Consensus       179 ~~l~~a~~~~~~a~~~~~  196 (428)
                      +++++|...+.+++...|
T Consensus       162 g~~~eA~~~l~~~l~~~~  179 (355)
T cd05804         162 GRFKEGIAFMESWRDTWD  179 (355)
T ss_pred             CCHHHHHHHHHhhhhccC
Confidence            556777777777776654

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.66  E-value=6.4e-08  Score=102.29  Aligned_cols=157  Identities=14%  Similarity=0.113  Sum_probs=128.0

Q ss_pred             hccChhhhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc---HHH
Q 014256           34 VSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT---AVA  109 (428)
Q Consensus        34 ~~~~~~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~---~~~  109 (428)
                      ....+..++.-+|..| ..-+...|..+|.++..+++...++  +...+..|....+++.|......+-+..|.   ...
T Consensus       487 ld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaea--aaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~n  564 (1238)
T KOG1127|consen  487 LDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEA--AAASADTYAEESTWEEAFEICLRAAQKAPAFACKEN  564 (1238)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhh--HHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhh
Confidence            5667778888888888 4457888999999999999887776  668888888888899888887777777765   445


Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH----------HH
Q 014256          110 YANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI----------KK  179 (428)
Q Consensus       110 ~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~----------~~  179 (428)
                      |..+|..|+..+++..|+..|..|++.+|.+..+|..+|.+|-..|+|..|+..|.++..++|.+.-.          .+
T Consensus       565 W~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~G  644 (1238)
T KOG1127|consen  565 WVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNG  644 (1238)
T ss_pred             hhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhh
Confidence            77789999999999999999999999999999999999999999999999999999999999987543          45


Q ss_pred             HHHHHHHHHHHHH
Q 014256          180 QLAEVKSLYEKEV  192 (428)
Q Consensus       180 ~l~~a~~~~~~a~  192 (428)
                      .+.++...+...+
T Consensus       645 kYkeald~l~~ii  657 (1238)
T KOG1127|consen  645 KYKEALDALGLII  657 (1238)
T ss_pred             hHHHHHHHHHHHH
Confidence            5555555555433

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.64  E-value=3.7e-07  Score=86.14  Aligned_cols=137  Identities=12%  Similarity=0.033  Sum_probs=121.3

Q ss_pred             hhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCc---hHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHH
Q 014256           40 SAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTP---DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRA  114 (428)
Q Consensus        40 ~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~---~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla  114 (428)
                      .|+..+-..| ...+|.+||+.-.+...+.+...   -|..+.+++..+....+++.|+..+.++++.+|+ ..+-..+|
T Consensus       142 ~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG  221 (389)
T COG2956         142 GALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILG  221 (389)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhh
Confidence            4566666778 88999999999999998887653   3556788999999999999999999999999999 77888899


Q ss_pred             HHHHHhcCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q 014256          115 MAYLKLRRFQEAEDDCTEALNLDDRY-IKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE  176 (428)
Q Consensus       115 ~~~~~~~~~~eA~~~~~~al~l~p~~-~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~  176 (428)
                      .+++..|+|+.|++.++.+++.||.+ +.+.-.+..||..+|+.++....+.++.+..++...
T Consensus       222 ~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~  284 (389)
T COG2956         222 RVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADA  284 (389)
T ss_pred             HHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccH
Confidence            99999999999999999999999998 467888999999999999999999999999887543

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.64  E-value=1.5e-06  Score=81.74  Aligned_cols=134  Identities=16%  Similarity=0.095  Sum_probs=105.5

Q ss_pred             ccCCCCcchHHHHHhhhhcCCCCchH-HHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc----HHHHHHHHHHHHHhcC-
Q 014256           49 NSYSRNYDPVSHISSSLMNEESTPDA-TSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRR-  122 (428)
Q Consensus        49 y~~g~~~~Ai~~~~~al~~~p~~~~a-~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~nla~~~~~~~~-  122 (428)
                      +..|+|++|+..|++++...|....+ .+.+.+|.++++.++|++|+..|++.+..+|+    +.+++.+|.++..+++ 
T Consensus        43 ~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~  122 (243)
T PRK10866         43 LQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDS  122 (243)
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchh
Confidence            47789999999999999999876544 23578999999999999999999999999887    6678999988755541 


Q ss_pred             -----------------HHHHHHHHHHHHhcCCCCHH---H--------------HHHHHHHHHHcCCHHHHHHHHHHHH
Q 014256          123 -----------------FQEAEDDCTEALNLDDRYIK---A--------------YSRRATARKELGKLKESIEDSEFAL  168 (428)
Q Consensus       123 -----------------~~eA~~~~~~al~l~p~~~~---a--------------~~~lg~~~~~lg~~~eA~~~~~~al  168 (428)
                                       ...|+..|+..++..|+...   +              -+..|.-|.+.|.|..|+.-++.++
T Consensus       123 ~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~  202 (243)
T PRK10866        123 ALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQML  202 (243)
T ss_pred             hhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence                             35788899999999997632   2              2234666888899999999999999


Q ss_pred             hhCCCcHHHHHHHH
Q 014256          169 RLEPQNQEIKKQLA  182 (428)
Q Consensus       169 ~l~P~~~~~~~~l~  182 (428)
                      .-.|+.+....-+-
T Consensus       203 ~~Yp~t~~~~eal~  216 (243)
T PRK10866        203 RDYPDTQATRDALP  216 (243)
T ss_pred             HHCCCCchHHHHHH
Confidence            99998776543333

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.64  E-value=1.8e-07  Score=70.47  Aligned_cols=70  Identities=29%  Similarity=0.444  Sum_probs=64.3

Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 014256           80 LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRAT  149 (428)
Q Consensus        80 lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~  149 (428)
                      +..+|+..++|+.|+.++++++.++|+ +..|..+|.|+..+|+|.+|..++++++...|+++.+...++.
T Consensus         1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~   71 (73)
T PF13371_consen    1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM   71 (73)
T ss_pred             CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence            357899999999999999999999999 8899999999999999999999999999999999887665543

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.62  E-value=7.2e-07  Score=85.98  Aligned_cols=159  Identities=16%  Similarity=0.121  Sum_probs=119.8

Q ss_pred             hhhccChhhhhcCCCcc------------c-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhc--CHHHHHHH
Q 014256           32 NLVSSSLKSAKKPSPSG------------N-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQK--KFKEAIDC   96 (428)
Q Consensus        32 ~~~~~~~~~a~~~~~~~------------y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g--~~~~Ai~~   96 (428)
                      ++..++++.|+..+...            | ..++++.|.+.+......+++..-.  ....+++.+..|  ++.+|.-.
T Consensus       112 ~~~~~~~~~AL~~l~~~~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~--qLa~awv~l~~g~e~~~~A~y~  189 (290)
T PF04733_consen  112 LFHEGDYEEALKLLHKGGSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILT--QLAEAWVNLATGGEKYQDAFYI  189 (290)
T ss_dssp             HCCCCHHHHHHCCCTTTTCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHH--HHHHHHHHHHHTTTCCCHHHHH
T ss_pred             HHHcCCHHHHHHHHHccCcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHH--HHHHHHHHHHhCchhHHHHHHH
Confidence            34667778887666554            3 7899999999999988887653322  334444555555  69999999


Q ss_pred             HHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhhCCCc
Q 014256           97 YSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKL-KESIEDSEFALRLEPQN  174 (428)
Q Consensus        97 y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~-~eA~~~~~~al~l~P~~  174 (428)
                      |++.....+. +...+.+|.|++.+|+|++|...+.+++..+|.++.++.++..+...+|+. +.+.+++.+....+|++
T Consensus       190 f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h  269 (290)
T PF04733_consen  190 FEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNH  269 (290)
T ss_dssp             HHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTS
T ss_pred             HHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCC
Confidence            9998877655 888999999999999999999999999999999999999999999999998 56677888888899988


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 014256          175 QEIKKQLAEVKSLYEKEVF  193 (428)
Q Consensus       175 ~~~~~~l~~a~~~~~~a~~  193 (428)
                      +-+. .+.+....|++++.
T Consensus       270 ~~~~-~~~~~~~~FD~~~~  287 (290)
T PF04733_consen  270 PLVK-DLAEKEAEFDRAVA  287 (290)
T ss_dssp             HHHH-HHHHHHHHHHHHHH
T ss_pred             hHHH-HHHHHHHHHHHHHH
Confidence            7654 44555566665543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.62  E-value=1.2e-07  Score=70.45  Aligned_cols=59  Identities=25%  Similarity=0.194  Sum_probs=29.0

Q ss_pred             HhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH
Q 014256          119 KLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI  177 (428)
Q Consensus       119 ~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~  177 (428)
                      ..|+|++|+..|++++..+|++..+++.+|.++...|++++|...+++++..+|+++.+
T Consensus         3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~   61 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEY   61 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHH
T ss_pred             hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHH
Confidence            34445555555555555555555555555555555555555555555555555544433

...

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.61  E-value=6.4e-07  Score=79.26  Aligned_cols=96  Identities=19%  Similarity=0.155  Sum_probs=81.2

Q ss_pred             HHHHhcCHHHHHHHHHHHHccCCc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHcCC
Q 014256           83 ECFKQKKFKEAIDCYSRSIALSPT---AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDR---YIKAYSRRATARKELGK  156 (428)
Q Consensus        83 ~~~~~g~~~~Ai~~y~~al~~~p~---~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~---~~~a~~~lg~~~~~lg~  156 (428)
                      .+|-.+.|..+...+...+...+.   ..+|+++|.++..+|+|++|+..|.+++.+.|+   .+.+++++|.++...|+
T Consensus         8 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~   87 (168)
T CHL00033          8 DNFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGE   87 (168)
T ss_pred             ccccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCC
Confidence            344556677777777766665554   678999999999999999999999999998765   34689999999999999


Q ss_pred             HHHHHHHHHHHHhhCCCcHHHH
Q 014256          157 LKESIEDSEFALRLEPQNQEIK  178 (428)
Q Consensus       157 ~~eA~~~~~~al~l~P~~~~~~  178 (428)
                      +++|+..+++++.++|.+....
T Consensus        88 ~~eA~~~~~~Al~~~~~~~~~~  109 (168)
T CHL00033         88 HTKALEYYFQALERNPFLPQAL  109 (168)
T ss_pred             HHHHHHHHHHHHHhCcCcHHHH
Confidence            9999999999999999887653

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.60  E-value=9.4e-07  Score=91.72  Aligned_cols=133  Identities=14%  Similarity=0.090  Sum_probs=110.3

Q ss_pred             cCCCCchHHHHHHHHHHHHHhcC---HHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhc--------CHHHHHHHHHHHH
Q 014256           67 NEESTPDATSEKELGNECFKQKK---FKEAIDCYSRSIALSPT-AVAYANRAMAYLKLR--------RFQEAEDDCTEAL  134 (428)
Q Consensus        67 ~~p~~~~a~~~~~lg~~~~~~g~---~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~--------~~~eA~~~~~~al  134 (428)
                      ..|.+..++.++..|..++..++   +..|+.+|+++++++|+ +.+|..++.+|....        +...+.....+++
T Consensus       332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~  411 (517)
T PRK10153        332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV  411 (517)
T ss_pred             cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence            34566678888999999887655   88999999999999999 888888888886653        3445566666666


Q ss_pred             hc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH----------HHHHHHHHHHHHHHHHhchhhhH
Q 014256          135 NL--DDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI----------KKQLAEVKSLYEKEVFQKASKTL  200 (428)
Q Consensus       135 ~l--~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~----------~~~l~~a~~~~~~a~~~~~~~~~  200 (428)
                      .+  +|.++.+|.-+|..+...|++++|...+++++.++|+ ..+          .++.++|...|.+++.++|..+.
T Consensus       412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt  488 (517)
T PRK10153        412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT  488 (517)
T ss_pred             hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence            64  7888899999999999999999999999999999995 443          45788899999999999998775

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.60  E-value=1.2e-06  Score=88.62  Aligned_cols=145  Identities=6%  Similarity=0.006  Sum_probs=85.3

Q ss_pred             cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCC------------------------
Q 014256           50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSP------------------------  105 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p------------------------  105 (428)
                      ..|+++.|+..+++....+|++..+  +..++.+|...|+|++|++.+.+..+..+                        
T Consensus       165 ~~g~~~~Al~~l~~~~~~~P~~~~a--l~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~  242 (398)
T PRK10747        165 ARNENHAARHGVDKLLEVAPRHPEV--LRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMAD  242 (398)
T ss_pred             HCCCHHHHHHHHHHHHhcCCCCHHH--HHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence            5677777777777777777777666  55777777777777777755554443211                        


Q ss_pred             ------------------c-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 014256          106 ------------------T-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEF  166 (428)
Q Consensus       106 ------------------~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~  166 (428)
                                        + +.++..+|..+...|+.++|.....++++. +.++......+.+  ..|+.++++..+++
T Consensus       243 ~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~  319 (398)
T PRK10747        243 QGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQ  319 (398)
T ss_pred             cCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHH
Confidence                              1 223444566666666666666666666653 2233222222221  22555555555555


Q ss_pred             HHhhCCCcHHH----------HHHHHHHHHHHHHHHHhchhhh
Q 014256          167 ALRLEPQNQEI----------KKQLAEVKSLYEKEVFQKASKT  199 (428)
Q Consensus       167 al~l~P~~~~~----------~~~l~~a~~~~~~a~~~~~~~~  199 (428)
                      .++..|+++..          .+++.+|...|++++..+|+..
T Consensus       320 ~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~  362 (398)
T PRK10747        320 QIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY  362 (398)
T ss_pred             HHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH
Confidence            56666666654          2446666666666666666554

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.59  E-value=1.5e-07  Score=84.18  Aligned_cols=105  Identities=19%  Similarity=0.116  Sum_probs=100.5

Q ss_pred             chHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 014256           72 PDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATA  150 (428)
Q Consensus        72 ~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~  150 (428)
                      ..+..++++|+.|-..|=+.-|.-.|.+++.+.|+ +.+++.+|..+...|+|+.|.+.|+..+++||.+-.++.|+|.+
T Consensus        63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~  142 (297)
T COG4785          63 ERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA  142 (297)
T ss_pred             HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee
Confidence            35667899999999999999999999999999999 99999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCcHH
Q 014256          151 RKELGKLKESIEDSEFALRLEPQNQE  176 (428)
Q Consensus       151 ~~~lg~~~eA~~~~~~al~l~P~~~~  176 (428)
                      ++--|+|.-|.+++.+-.+-+|+++-
T Consensus       143 ~YY~gR~~LAq~d~~~fYQ~D~~DPf  168 (297)
T COG4785         143 LYYGGRYKLAQDDLLAFYQDDPNDPF  168 (297)
T ss_pred             eeecCchHhhHHHHHHHHhcCCCChH
Confidence            99999999999999999999999875

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.59  E-value=5.9e-07  Score=97.16  Aligned_cols=126  Identities=14%  Similarity=0.063  Sum_probs=107.8

Q ss_pred             cCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCH----
Q 014256           67 NEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYI----  141 (428)
Q Consensus        67 ~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~----  141 (428)
                      .+|.+..+  +..++..+...|++++|+..+..+++..|+ ..+|+..|..+++.+++..|...  .++.+.+.+.    
T Consensus        26 ~~p~n~~a--~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~  101 (906)
T PRK14720         26 YSLSKFKE--LDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAI  101 (906)
T ss_pred             CCcchHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhH
Confidence            35666666  779999999999999999999999999999 88999999999999988777655  5555555544    


Q ss_pred             ---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHH---------HHHHHHHHHHHHHHHhch
Q 014256          142 ---------------KAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK---------KQLAEVKSLYEKEVFQKA  196 (428)
Q Consensus       142 ---------------~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~---------~~l~~a~~~~~~a~~~~~  196 (428)
                                     .|++.+|.||..+|++++|...|+++++++|+|+.+.         .++++|..++.+++....
T Consensus       102 ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~dL~KA~~m~~KAV~~~i  180 (906)
T PRK14720        102 VEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEEDKEKAITYLKKAIYRFI  180 (906)
T ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence                           8999999999999999999999999999999999872         267888999998887653

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.59  E-value=1.6e-06  Score=86.15  Aligned_cols=120  Identities=19%  Similarity=0.106  Sum_probs=110.8

Q ss_pred             CCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 014256           69 ESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRR  147 (428)
Q Consensus        69 p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~l  147 (428)
                      |.-..+  +|..+..++..|+++.|+..++..+...|+ +.++-..+.+++..++..+|.+.+++++.++|..+-..+++
T Consensus       303 ~~~~aa--~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~  380 (484)
T COG4783         303 RGGLAA--QYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNL  380 (484)
T ss_pred             ccchHH--HHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHH
Confidence            444445  789999999999999999999999999998 88889999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHH
Q 014256          148 ATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEK  190 (428)
Q Consensus       148 g~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~~  190 (428)
                      |.++...|++.+|+..+...+.-+|+++..+..+.+|......
T Consensus       381 a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~  423 (484)
T COG4783         381 AQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGN  423 (484)
T ss_pred             HHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCc
Confidence            9999999999999999999999999999999888887765553

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.58  E-value=1e-06  Score=80.53  Aligned_cols=104  Identities=20%  Similarity=0.163  Sum_probs=86.4

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---HHHHHH
Q 014256           74 ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY---IKAYSR  146 (428)
Q Consensus        74 a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~---~~a~~~  146 (428)
                      +..++..|..++..|+|.+|+..|++++...|.    +.+.+.+|.++++.|+|++|+..+++.+...|++   ..+++.
T Consensus         5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~   84 (203)
T PF13525_consen    5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYM   84 (203)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHH
Confidence            344889999999999999999999999999886    7789999999999999999999999999999987   468999


Q ss_pred             HHHHHHHcC-----------CHHHHHHHHHHHHhhCCCcHHH
Q 014256          147 RATARKELG-----------KLKESIEDSEFALRLEPQNQEI  177 (428)
Q Consensus       147 lg~~~~~lg-----------~~~eA~~~~~~al~l~P~~~~~  177 (428)
                      +|.++..+.           ...+|+..|+..+...|+..-+
T Consensus        85 ~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~  126 (203)
T PF13525_consen   85 LGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYA  126 (203)
T ss_dssp             HHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTH
T ss_pred             HHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHH
Confidence            999876653           3458999999999999987544

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.58  E-value=2.5e-06  Score=80.21  Aligned_cols=105  Identities=14%  Similarity=0.080  Sum_probs=90.7

Q ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---HHHHH
Q 014256           73 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY---IKAYS  145 (428)
Q Consensus        73 ~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~---~~a~~  145 (428)
                      .+..++..|..++..|+|++|+..|++++...|.    ..+.+++|.+|+++++|++|+..+++.++++|++   +.+++
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y  110 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY  110 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence            3444789999999999999999999999999998    4456899999999999999999999999999977   56799


Q ss_pred             HHHHHHHHcCC------------------HHHHHHHHHHHHhhCCCcHHH
Q 014256          146 RRATARKELGK------------------LKESIEDSEFALRLEPQNQEI  177 (428)
Q Consensus       146 ~lg~~~~~lg~------------------~~eA~~~~~~al~l~P~~~~~  177 (428)
                      .+|.++..++.                  ..+|+..|+..++..|+..-+
T Consensus       111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya  160 (243)
T PRK10866        111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYT  160 (243)
T ss_pred             HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhH
Confidence            99998766651                  257889999999999987543

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.57  E-value=2.1e-07  Score=95.92  Aligned_cols=121  Identities=21%  Similarity=0.279  Sum_probs=115.3

Q ss_pred             cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHH
Q 014256           50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  128 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~  128 (428)
                      ..++|.++..+++..+.++|-....  |+.+|.+..+.++++.|..+|.+++.++|+ ..+|+|++.+|+++++-.+|..
T Consensus       497 ~~~~fs~~~~hle~sl~~nplq~~~--wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~  574 (777)
T KOG1128|consen  497 SNKDFSEADKHLERSLEINPLQLGT--WFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFR  574 (777)
T ss_pred             cchhHHHHHHHHHHHhhcCccchhH--HHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHH
Confidence            6799999999999999999987766  999999999999999999999999999999 9999999999999999999999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 014256          129 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEP  172 (428)
Q Consensus       129 ~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P  172 (428)
                      .+.+|++.+-.+.+.|-|...+....|.+++|+..+.+.+.+.-
T Consensus       575 ~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~  618 (777)
T KOG1128|consen  575 KLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRK  618 (777)
T ss_pred             HHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhh
Confidence            99999999999999999999999999999999999999887653

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.57  E-value=2.6e-07  Score=91.88  Aligned_cols=69  Identities=23%  Similarity=0.296  Sum_probs=62.0

Q ss_pred             cCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-H---HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 014256           67 NEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-A---VAYANRAMAYLKLRRFQEAEDDCTEALNLD  137 (428)
Q Consensus        67 ~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~---~~~~nla~~~~~~~~~~eA~~~~~~al~l~  137 (428)
                      .+|++..+  ++++|.+|+..|+|++|+.+|+++++++|+ .   .+|+|+|.||.++|++++|+.++.+|+++.
T Consensus        70 ~dP~~a~a--~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels  142 (453)
T PLN03098         70 ADVKTAED--AVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY  142 (453)
T ss_pred             CCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            45665555  889999999999999999999999999998 4   459999999999999999999999999984

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.57  E-value=2.4e-07  Score=68.70  Aligned_cols=66  Identities=26%  Similarity=0.275  Sum_probs=60.2

Q ss_pred             HHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 014256           84 CFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRAT  149 (428)
Q Consensus        84 ~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~  149 (428)
                      +++.|+|++|+..|++++..+|+ ..+++.+|.||++.|++++|...+.+++..+|+++.++..++.
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~   67 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ   67 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence            46789999999999999999998 9999999999999999999999999999999999887776664

...

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.56  E-value=3.8e-07  Score=86.53  Aligned_cols=94  Identities=13%  Similarity=0.057  Sum_probs=85.2

Q ss_pred             cCCCCcchHHHHHhhhhcCCCCch-HHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc----HHHHHHHHHHHHHhcCHH
Q 014256           50 SYSRNYDPVSHISSSLMNEESTPD-ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQ  124 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~~~~-a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~nla~~~~~~~~~~  124 (428)
                      ..|+|++|+..|+..+...|+... ..+++.+|.+|+..|+|++|+..|.+++..+|+    +.+++.+|.++..+|+++
T Consensus       155 ~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~  234 (263)
T PRK10803        155 DKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTA  234 (263)
T ss_pred             hcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHH
Confidence            568999999999999999998742 334889999999999999999999999998886    789999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCHHH
Q 014256          125 EAEDDCTEALNLDDRYIKA  143 (428)
Q Consensus       125 eA~~~~~~al~l~p~~~~a  143 (428)
                      +|...|+++++..|+...+
T Consensus       235 ~A~~~~~~vi~~yP~s~~a  253 (263)
T PRK10803        235 KAKAVYQQVIKKYPGTDGA  253 (263)
T ss_pred             HHHHHHHHHHHHCcCCHHH
Confidence            9999999999999998654

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.55  E-value=7.9e-07  Score=77.76  Aligned_cols=93  Identities=24%  Similarity=0.228  Sum_probs=70.1

Q ss_pred             HHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcC----------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC--
Q 014256           90 FKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRR----------FQEAEDDCTEALNLDDRYIKAYSRRATARKELGK--  156 (428)
Q Consensus        90 ~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~----------~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~--  156 (428)
                      |+.|.+.|+.....+|. +..+++.|.+++.+.+          +++|+.-|++||.++|+...+++++|.+|..++.  
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~   86 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT   86 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence            67788888888888887 8888888888777643          6788889999999999999999999999988764  


Q ss_pred             ---------HHHHHHHHHHHHhhCCCcHHHHHHHH
Q 014256          157 ---------LKESIEDSEFALRLEPQNQEIKKQLA  182 (428)
Q Consensus       157 ---------~~eA~~~~~~al~l~P~~~~~~~~l~  182 (428)
                               |++|..+|+++..++|++...+..++
T Consensus        87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe  121 (186)
T PF06552_consen   87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLE  121 (186)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence                     66777777777888887766544433

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PRK15331 chaperone protein SicA; Provisional

Probab=98.54  E-value=4.1e-07  Score=78.76  Aligned_cols=91  Identities=15%  Similarity=0.109  Sum_probs=82.8

Q ss_pred             ccCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHH
Q 014256           49 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE  127 (428)
Q Consensus        49 y~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~  127 (428)
                      |..|++++|...|.-+...+|.+.+-  |..+|.++-..|+|++|+.+|..+..++++ +..++..|.||+.+|+.+.|.
T Consensus        48 y~~Gk~~eA~~~F~~L~~~d~~n~~Y--~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~  125 (165)
T PRK15331         48 YNQGRLDEAETFFRFLCIYDFYNPDY--TMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKAR  125 (165)
T ss_pred             HHCCCHHHHHHHHHHHHHhCcCcHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHH
Confidence            48999999999999999999887665  889999999999999999999999999987 888899999999999999999


Q ss_pred             HHHHHHHhcCCCCHH
Q 014256          128 DDCTEALNLDDRYIK  142 (428)
Q Consensus       128 ~~~~~al~l~p~~~~  142 (428)
                      .+|..++. .|.+..
T Consensus       126 ~~f~~a~~-~~~~~~  139 (165)
T PRK15331        126 QCFELVNE-RTEDES  139 (165)
T ss_pred             HHHHHHHh-CcchHH
Confidence            99999998 455443

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.52  E-value=1.2e-06  Score=87.15  Aligned_cols=68  Identities=21%  Similarity=0.143  Sum_probs=64.5

Q ss_pred             cCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 014256          103 LSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKA---YSRRATARKELGKLKESIEDSEFALRL  170 (428)
Q Consensus       103 ~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a---~~~lg~~~~~lg~~~eA~~~~~~al~l  170 (428)
                      .+|+ +.+|+|+|.+|..+|+|++|+..|++++.++|++..+   |+++|.+|..+|++++|+.+|++++++
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4777 9999999999999999999999999999999999855   999999999999999999999999998

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.52  E-value=3.1e-06  Score=85.60  Aligned_cols=150  Identities=8%  Similarity=0.042  Sum_probs=122.2

Q ss_pred             ccCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHH
Q 014256           49 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE  127 (428)
Q Consensus        49 y~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~  127 (428)
                      +..|+++.|..+|.++.+.+|+...+. ....+..+...|++++|+..+++.++.+|+ +.++..++.+|...|+|++|+
T Consensus       129 ~~~g~~~~A~~~l~~A~~~~~~~~~~~-~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~  207 (398)
T PRK10747        129 QQRGDEARANQHLERAAELADNDQLPV-EITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLL  207 (398)
T ss_pred             HHCCCHHHHHHHHHHHHhcCCcchHHH-HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHH
Confidence            378999999999999999988765332 224489999999999999999999999999 889999999999999999999


Q ss_pred             HHHHHHHhc------------------------------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 014256          128 DDCTEALNL------------------------------------------DDRYIKAYSRRATARKELGKLKESIEDSE  165 (428)
Q Consensus       128 ~~~~~al~l------------------------------------------~p~~~~a~~~lg~~~~~lg~~~eA~~~~~  165 (428)
                      ..+.+..+.                                          .|+++.++..+|.++...|+.++|...++
T Consensus       208 ~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~  287 (398)
T PRK10747        208 DILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIIL  287 (398)
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            555554422                                          23466778888999999999999999999


Q ss_pred             HHHhhCCCcHHH--------HHHHHHHHHHHHHHHHhchhhhH
Q 014256          166 FALRLEPQNQEI--------KKQLAEVKSLYEKEVFQKASKTL  200 (428)
Q Consensus       166 ~al~l~P~~~~~--------~~~l~~a~~~~~~a~~~~~~~~~  200 (428)
                      ++++..| ++..        .++..++...+++.+...|.++.
T Consensus       288 ~~l~~~~-~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~  329 (398)
T PRK10747        288 DGLKRQY-DERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPL  329 (398)
T ss_pred             HHHhcCC-CHHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHH
Confidence            9999555 4442        24556778888888888888775

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.51  E-value=1.3e-06  Score=87.18  Aligned_cols=113  Identities=12%  Similarity=0.126  Sum_probs=101.3

Q ss_pred             cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHH
Q 014256           50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  128 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~  128 (428)
                      ..++++.|+..|++....+|.   +  ...++.++...++..+|+..+.+++...|. ...+...|..++..++|+.|+.
T Consensus       181 ~t~~~~~ai~lle~L~~~~pe---v--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~  255 (395)
T PF09295_consen  181 LTQRYDEAIELLEKLRERDPE---V--AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALE  255 (395)
T ss_pred             hcccHHHHHHHHHHHHhcCCc---H--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHH
Confidence            567899999999999988874   3  336788888899999999999999999998 8888899999999999999999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 014256          129 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFA  167 (428)
Q Consensus       129 ~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a  167 (428)
                      .+++++.+.|++..+|+.|+.+|..+|+|+.|+..++.+
T Consensus       256 iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~  294 (395)
T PF09295_consen  256 IAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC  294 (395)
T ss_pred             HHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence            999999999999999999999999999999999776543

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.48  E-value=3.6e-06  Score=85.95  Aligned_cols=134  Identities=16%  Similarity=0.164  Sum_probs=116.2

Q ss_pred             cChhhhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHH
Q 014256           36 SSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANR  113 (428)
Q Consensus        36 ~~~~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nl  113 (428)
                      +...+.+...|-.+ ..|+-++|..+....+..++...-.  |.-+|.++...++|.+|+.||+.|+.++|+ ...|.-+
T Consensus        38 ~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vC--wHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDl  115 (700)
T KOG1156|consen   38 PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVC--WHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDL  115 (700)
T ss_pred             CccchhHHhccchhhcccchHHHHHHHHHHhccCcccchh--HHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence            44445555555555 8899999999999999988876544  889999999999999999999999999998 8899999


Q ss_pred             HHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 014256          114 AMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLE  171 (428)
Q Consensus       114 a~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~  171 (428)
                      +....++++|+.....-.+.++++|.+...|...+.++.-+|+|..|...++......
T Consensus       116 slLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~  173 (700)
T KOG1156|consen  116 SLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQ  173 (700)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999999988776665544

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=98.47  E-value=3.3e-06  Score=86.23  Aligned_cols=126  Identities=11%  Similarity=-0.017  Sum_probs=97.7

Q ss_pred             cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHH
Q 014256           50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  128 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~  128 (428)
                      .+++.++|+.+++++|+..|.+...  |..+|.++.+.++.+.|.+.|...+...|+ ..+|..++..-.+.|..-.|..
T Consensus       663 ~ld~~eeA~rllEe~lk~fp~f~Kl--~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~  740 (913)
T KOG0495|consen  663 YLDNVEEALRLLEEALKSFPDFHKL--WLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARS  740 (913)
T ss_pred             HhhhHHHHHHHHHHHHHhCCchHHH--HHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHH
Confidence            4677777888888888887777666  667788888888888888888888888887 7777777777777778888888


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH
Q 014256          129 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI  177 (428)
Q Consensus       129 ~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~  177 (428)
                      .++++.-.+|++...|.-.-.+-.+.|+.+.|.....++|+-.|++...
T Consensus       741 ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~L  789 (913)
T KOG0495|consen  741 ILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLL  789 (913)
T ss_pred             HHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchh
Confidence            8888888888887777777777777888888888888888777776543

>PRK11906 transcriptional regulator; Provisional

Probab=98.47  E-value=3.6e-06  Score=83.98  Aligned_cols=128  Identities=13%  Similarity=0.027  Sum_probs=110.2

Q ss_pred             hHH--HHHHHHHHHHHhc---CHHHHHHHHHHHH---ccCCc-HHHHHHHHHHHHHh---------cCHHHHHHHHHHHH
Q 014256           73 DAT--SEKELGNECFKQK---KFKEAIDCYSRSI---ALSPT-AVAYANRAMAYLKL---------RRFQEAEDDCTEAL  134 (428)
Q Consensus        73 ~a~--~~~~lg~~~~~~g---~~~~Ai~~y~~al---~~~p~-~~~~~nla~~~~~~---------~~~~eA~~~~~~al  134 (428)
                      .++  .++.+|...+..+   ..+.|+.+|.+|+   .++|. +.+|..+|.||+..         ..-.+|.+...+|+
T Consensus       252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv  331 (458)
T PRK11906        252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS  331 (458)
T ss_pred             cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence            555  5677787776654   4668999999999   99999 88999999998876         13567899999999


Q ss_pred             hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH----------HHHHHHHHHHHHHHHHhchhhhH
Q 014256          135 NLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI----------KKQLAEVKSLYEKEVFQKASKTL  200 (428)
Q Consensus       135 ~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~----------~~~l~~a~~~~~~a~~~~~~~~~  200 (428)
                      ++||.|+.++..+|.++...|+++.|...|++++.++|+...+          .++.++|...+++++.++|....
T Consensus       332 eld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~  407 (458)
T PRK11906        332 DITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRK  407 (458)
T ss_pred             hcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhH
Confidence            9999999999999999999999999999999999999999887          35678889999999999987654

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.45  E-value=1.7e-06  Score=88.32  Aligned_cols=133  Identities=11%  Similarity=0.070  Sum_probs=122.9

Q ss_pred             cCCCccccCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhc
Q 014256           43 KPSPSGNSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLR  121 (428)
Q Consensus        43 ~~~~~~y~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~  121 (428)
                      .++-.+|..++|...++..+.+|...|.+.+.  +-..|..+...|+-++|..+...++..++. .+.|.-+|..+..-+
T Consensus        12 ~~~lk~yE~kQYkkgLK~~~~iL~k~~eHges--lAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK   89 (700)
T KOG1156|consen   12 RRALKCYETKQYKKGLKLIKQILKKFPEHGES--LAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDK   89 (700)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHhCCccchh--HHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhh
Confidence            44556677889999999999999999998887  448899999999999999999999999988 889999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH
Q 014256          122 RFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI  177 (428)
Q Consensus       122 ~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~  177 (428)
                      +|++|+.+|..|+.++|+|...+..++....++|+|+.....-.+.+++.|+.-..
T Consensus        90 ~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~  145 (700)
T KOG1156|consen   90 KYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRAS  145 (700)
T ss_pred             hHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHH
Confidence            99999999999999999999999999999999999999999999999999987654

>TIGR00540 hemY_coli hemY protein

Probab=98.45  E-value=9.5e-06  Score=82.37  Aligned_cols=126  Identities=9%  Similarity=-0.013  Sum_probs=111.5

Q ss_pred             ccCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCcH--HHHHHHHHHHHHhcCHHHH
Q 014256           49 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTA--VAYANRAMAYLKLRRFQEA  126 (428)
Q Consensus        49 y~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~~--~~~~nla~~~~~~~~~~eA  126 (428)
                      +..|++..|.+.+.++.+..|.....  +...|..+...|+++.|..+|.++.+..|+.  .+...++..++..|+++.|
T Consensus        95 ~~~g~~~~A~~~l~~~~~~~~~~~~~--~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A  172 (409)
T TIGR00540        95 LAEGDYAKAEKLIAKNADHAAEPVLN--LIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA  172 (409)
T ss_pred             HhCCCHHHHHHHHHHHhhcCCCCHHH--HHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence            37899999999999999988765444  5678999999999999999999999988883  3556679999999999999


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q 014256          127 EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE  176 (428)
Q Consensus       127 ~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~  176 (428)
                      ...++..++..|+++.++..++.++...|++++|...+.+.++....++.
T Consensus       173 l~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~  222 (409)
T TIGR00540       173 RHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDE  222 (409)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHH
Confidence            99999999999999999999999999999999999999999987544433

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>TIGR00540 hemY_coli hemY protein

Probab=98.44  E-value=3.4e-06  Score=85.65  Aligned_cols=135  Identities=9%  Similarity=0.010  Sum_probs=101.2

Q ss_pred             HHHHHhhhhcCCCC--chHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHH--HHHHHHHHHHhcCHHHHHHHHHH
Q 014256           58 VSHISSSLMNEEST--PDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVA--YANRAMAYLKLRRFQEAEDDCTE  132 (428)
Q Consensus        58 i~~~~~al~~~p~~--~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~--~~nla~~~~~~~~~~eA~~~~~~  132 (428)
                      ...+..+....|..  .....+..+|..+...|++++|+..++++++..|+ ...  ..-+....+..++.+.++..+++
T Consensus       245 ~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~  324 (409)
T TIGR00540       245 IDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEK  324 (409)
T ss_pred             HHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHH
Confidence            34455555555521  12233668899999999999999999999999988 321  23344445556889999999999


Q ss_pred             HHhcCCCCH--HHHHHHHHHHHHcCCHHHHHHHHH--HHHhhCCCcHHH---------HHHHHHHHHHHHHHH
Q 014256          133 ALNLDDRYI--KAYSRRATARKELGKLKESIEDSE--FALRLEPQNQEI---------KKQLAEVKSLYEKEV  192 (428)
Q Consensus       133 al~l~p~~~--~a~~~lg~~~~~lg~~~eA~~~~~--~al~l~P~~~~~---------~~~l~~a~~~~~~a~  192 (428)
                      +++.+|+++  ..+..+|.++.+.|+|++|..+|+  .++...|++...         .++.++|..+|++++
T Consensus       325 ~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l  397 (409)
T TIGR00540       325 QAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL  397 (409)
T ss_pred             HHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            999999999  888899999999999999999999  688888977654         234455566666554

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.40  E-value=1.9e-06  Score=78.45  Aligned_cols=128  Identities=20%  Similarity=0.211  Sum_probs=102.0

Q ss_pred             hhhhhcchhhhhh-hhhcccchhhhhccChhhhhcCCCccccCCCCcchHHHHHhhhh-cCCCCchHH--------HHHH
Q 014256           10 LDWDLSLNEKDKK-MKHKASSKDNLVSSSLKSAKKPSPSGNSYSRNYDPVSHISSSLM-NEESTPDAT--------SEKE   79 (428)
Q Consensus        10 ~~~e~~~~e~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~y~~g~~~~Ai~~~~~al~-~~p~~~~a~--------~~~~   79 (428)
                      ..|.|+.++++++ --+..+|+.+|+.+.|.+|...|         .+|+.++..+.- ..|..++..        .+.+
T Consensus       165 e~WqlsddeKmkav~~l~q~GN~lfk~~~ykEA~~~Y---------reAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllN  235 (329)
T KOG0545|consen  165 ETWQLSDDEKMKAVPVLHQEGNRLFKLGRYKEASSKY---------REAIICLRNLQLKEKPGEPEWLELDKMITPLLLN  235 (329)
T ss_pred             ccccCCchHhhhhhHHHHHhhhhhhhhccHHHHHHHH---------HHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHh
Confidence            3999999999998 55567888888888777765433         345555555432 344443321        2678


Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHH
Q 014256           80 LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSR  146 (428)
Q Consensus        80 lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~  146 (428)
                      ...|+...|+|-++++.....+..+|. ..+|+.+|.++...-+..+|..++..+++++|.-..+..+
T Consensus       236 y~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsr  303 (329)
T KOG0545|consen  236 YCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSR  303 (329)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHH
Confidence            899999999999999999999999998 8899999999999999999999999999999987665443

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.39  E-value=5.5e-07  Score=68.78  Aligned_cols=59  Identities=22%  Similarity=0.381  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHccC---C-c----HHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 014256           77 EKELGNECFKQKKFKEAIDCYSRSIALS---P-T----AVAYANRAMAYLKLRRFQEAEDDCTEALN  135 (428)
Q Consensus        77 ~~~lg~~~~~~g~~~~Ai~~y~~al~~~---p-~----~~~~~nla~~~~~~~~~~eA~~~~~~al~  135 (428)
                      +.++|.+|...|+|++|+.+|++++.+.   + +    +.++.++|.+|..+|++++|+..+++++.
T Consensus         8 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen    8 YNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            4455555555555555555555555431   1 1    33444455555555555555555544443

...

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.39  E-value=3.4e-06  Score=87.62  Aligned_cols=123  Identities=22%  Similarity=0.196  Sum_probs=107.1

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 014256           77 EKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG  155 (428)
Q Consensus        77 ~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg  155 (428)
                      |...|..+.+.+.-++|..|..++-.++|. +..|+.+|.++...|.+++|.+.|..|+.+||+++.+..-+|.++...|
T Consensus       653 wllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G  732 (799)
T KOG4162|consen  653 WLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELG  732 (799)
T ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC
Confidence            667888888999999999999999999998 8899999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHH--HHHHHHhhCCCcHHHHHHHHH----------HHHHHHHHHHhchhhh
Q 014256          156 KLKESIE--DSEFALRLEPQNQEIKKQLAE----------VKSLYEKEVFQKASKT  199 (428)
Q Consensus       156 ~~~eA~~--~~~~al~l~P~~~~~~~~l~~----------a~~~~~~a~~~~~~~~  199 (428)
                      +-.-|..  .+..+++++|.+.++|..+.+          |...|.-++.+.++.+
T Consensus       733 ~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P  788 (799)
T KOG4162|consen  733 SPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP  788 (799)
T ss_pred             CcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence            8887777  999999999999999765554          4445555555554433

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.39  E-value=1.7e-07  Score=89.16  Aligned_cols=97  Identities=31%  Similarity=0.521  Sum_probs=91.3

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 014256           77 EKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG  155 (428)
Q Consensus        77 ~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg  155 (428)
                      .+..+.-.+..|.++.|++.|..+|.++|. +..|..+|.+++++++...|+.+|..|+.++|+....|-.+|.++..+|
T Consensus       117 ~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg  196 (377)
T KOG1308|consen  117 KKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLG  196 (377)
T ss_pred             HHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhh
Confidence            455677788899999999999999999998 8999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhhCCC
Q 014256          156 KLKESIEDSEFALRLEPQ  173 (428)
Q Consensus       156 ~~~eA~~~~~~al~l~P~  173 (428)
                      +|.+|..++..+.+++-+
T Consensus       197 ~~e~aa~dl~~a~kld~d  214 (377)
T KOG1308|consen  197 NWEEAAHDLALACKLDYD  214 (377)
T ss_pred             chHHHHHHHHHHHhcccc
Confidence            999999999999998753

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.36  E-value=3.8e-06  Score=84.98  Aligned_cols=125  Identities=15%  Similarity=0.116  Sum_probs=103.6

Q ss_pred             hcCCCccccCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc----HHHHHHHHHHH
Q 014256           42 KKPSPSGNSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAY  117 (428)
Q Consensus        42 ~~~~~~~y~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~nla~~~  117 (428)
                      +..+......++|++|.....+++...|+...+  ++..-.++.+.++|++|+..    ++.++.    ....+..|.|+
T Consensus        16 ~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a--~~cKvValIq~~ky~~ALk~----ikk~~~~~~~~~~~fEKAYc~   89 (652)
T KOG2376|consen   16 LTDLNRHGKNGEYEEAVKTANKILSIVPDDEDA--IRCKVVALIQLDKYEDALKL----IKKNGALLVINSFFFEKAYCE   89 (652)
T ss_pred             HHHHHHhccchHHHHHHHHHHHHHhcCCCcHhh--HhhhHhhhhhhhHHHHHHHH----HHhcchhhhcchhhHHHHHHH
Confidence            334444447799999999999999999998877  67888899999999999844    444442    34447899999


Q ss_pred             HHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH
Q 014256          118 LKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQ  175 (428)
Q Consensus       118 ~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~  175 (428)
                      +++++.++|+.+++   .+++.+..+...+|.+++++|+|++|+..|+..++-+-++.
T Consensus        90 Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~  144 (652)
T KOG2376|consen   90 YRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQ  144 (652)
T ss_pred             HHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchH
Confidence            99999999999999   67888888999999999999999999999999977665443

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.34  E-value=9e-07  Score=85.21  Aligned_cols=136  Identities=18%  Similarity=0.139  Sum_probs=102.4

Q ss_pred             cChhhhh---cCCCccc-cCCCCcchHHHHHhhhhcCC----CCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccC---
Q 014256           36 SSLKSAK---KPSPSGN-SYSRNYDPVSHISSSLMNEE----STPDATSEKELGNECFKQKKFKEAIDCYSRSIALS---  104 (428)
Q Consensus        36 ~~~~~a~---~~~~~~y-~~g~~~~Ai~~~~~al~~~p----~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~---  104 (428)
                      ++++.|.   ...++.| ..|++++|...|.++.....    ....+..+...|.+|.+ +++.+|+.+|++++.+.   
T Consensus        29 ~~~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~-~~~~~Ai~~~~~A~~~y~~~  107 (282)
T PF14938_consen   29 PDYEEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK-GDPDEAIECYEKAIEIYREA  107 (282)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hCHHHHHHHHHHHHHHHHhc
Confidence            4777666   5555567 78999999999999966532    22334445666666654 59999999999999873   


Q ss_pred             --Cc--HHHHHHHHHHHHHh-cCHHHHHHHHHHHHhcCCC--C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 014256          105 --PT--AVAYANRAMAYLKL-RRFQEAEDDCTEALNLDDR--Y----IKAYSRRATARKELGKLKESIEDSEFALRLEP  172 (428)
Q Consensus       105 --p~--~~~~~nla~~~~~~-~~~~eA~~~~~~al~l~p~--~----~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P  172 (428)
                        +.  +.++.++|.+|... |++++|++.|.+|+.+...  .    ..++...|.++..+|+|++|+..|+++....-
T Consensus       108 G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l  186 (282)
T PF14938_consen  108 GRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCL  186 (282)
T ss_dssp             T-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCC
T ss_pred             CcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhh
Confidence              22  67889999999999 9999999999999987431  1    45678899999999999999999999987653

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.34  E-value=1.3e-06  Score=66.72  Aligned_cols=65  Identities=31%  Similarity=0.383  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC----C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 014256          107 AVAYANRAMAYLKLRRFQEAEDDCTEALNLD----D---RYIKAYSRRATARKELGKLKESIEDSEFALRLE  171 (428)
Q Consensus       107 ~~~~~nla~~~~~~~~~~eA~~~~~~al~l~----p---~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~  171 (428)
                      +.++.++|.+|..+|+|++|+..|++++.+.    +   ..+.+++++|.++..+|++++|+..+++++++.
T Consensus         5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~   76 (78)
T PF13424_consen    5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF   76 (78)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            3578999999999999999999999999762    1   236789999999999999999999999999863

...

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=98.28  E-value=1.1e-06  Score=85.42  Aligned_cols=129  Identities=19%  Similarity=0.215  Sum_probs=97.6

Q ss_pred             cCCCccc-cCCCCcchHHHHHhhhhcC----CCCchHHHHHHHHHHHHHhcC--------------------HHHHHHHH
Q 014256           43 KPSPSGN-SYSRNYDPVSHISSSLMNE----ESTPDATSEKELGNECFKQKK--------------------FKEAIDCY   97 (428)
Q Consensus        43 ~~~~~~y-~~g~~~~Ai~~~~~al~~~----p~~~~a~~~~~lg~~~~~~g~--------------------~~~Ai~~y   97 (428)
                      ..+|+.+ ..|.|++|+.+..+-|.+.    ....++.+++++|++|...|+                    ++.|+++|
T Consensus        99 gNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy  178 (639)
T KOG1130|consen   99 GNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFY  178 (639)
T ss_pred             ccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHH
Confidence            3455556 6789999998888877653    334456678999999988774                    56677777


Q ss_pred             HHHHccCCc-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHH
Q 014256           98 SRSIALSPT-------AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY------IKAYSRRATARKELGKLKESIEDS  164 (428)
Q Consensus        98 ~~al~~~p~-------~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~------~~a~~~lg~~~~~lg~~~eA~~~~  164 (428)
                      ..-+++...       ..+|-|+|..|+.+|+|+.|+..-+.-+.+...+      ..++.++|.++.-+|+++.|+++|
T Consensus       179 ~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehY  258 (639)
T KOG1130|consen  179 MENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHY  258 (639)
T ss_pred             HHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHH
Confidence            777766432       3578889999999999999998888777765433      457888999999999999999999


Q ss_pred             HHHHhhC
Q 014256          165 EFALRLE  171 (428)
Q Consensus       165 ~~al~l~  171 (428)
                      +..+.+.
T Consensus       259 K~tl~LA  265 (639)
T KOG1130|consen  259 KLTLNLA  265 (639)
T ss_pred             HHHHHHH
Confidence            8877553

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.26  E-value=6.3e-06  Score=69.90  Aligned_cols=97  Identities=20%  Similarity=0.223  Sum_probs=84.0

Q ss_pred             ccccCCCCcchHHHHHhhhhcCCCCch-HHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc----HHHHHHHHHHHHHhc
Q 014256           47 SGNSYSRNYDPVSHISSSLMNEESTPD-ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLR  121 (428)
Q Consensus        47 ~~y~~g~~~~Ai~~~~~al~~~p~~~~-a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~nla~~~~~~~  121 (428)
                      .++..|+|.+|++.|+.+....|.... ..+...+|.+|++.|+|++|+..|.+-|+++|.    .-+++.+|++++.+.
T Consensus        19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~   98 (142)
T PF13512_consen   19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQD   98 (142)
T ss_pred             HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHh
Confidence            345779999999999999998876532 234679999999999999999999999999997    568999999999998


Q ss_pred             C---------------HHHHHHHHHHHHhcCCCCHHH
Q 014256          122 R---------------FQEAEDDCTEALNLDDRYIKA  143 (428)
Q Consensus       122 ~---------------~~eA~~~~~~al~l~p~~~~a  143 (428)
                      .               ...|..+|.+.+...|+...+
T Consensus        99 ~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya  135 (142)
T PF13512_consen   99 EGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA  135 (142)
T ss_pred             hhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence            7               899999999999999987644

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.26  E-value=2.4e-05  Score=67.40  Aligned_cols=90  Identities=18%  Similarity=0.056  Sum_probs=77.8

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHccCCc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---HHHHHHHHH
Q 014256           77 EKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY---IKAYSRRAT  149 (428)
Q Consensus        77 ~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~---~~a~~~lg~  149 (428)
                      .+......+..+++..+...+...+.-+|+    ..+...+|.+++..|+|++|...|..++...|+.   ..+.+++|.
T Consensus        14 ~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~   93 (145)
T PF09976_consen   14 LYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR   93 (145)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence            445555555789999999999999998887    4568889999999999999999999999987655   468999999


Q ss_pred             HHHHcCCHHHHHHHHHH
Q 014256          150 ARKELGKLKESIEDSEF  166 (428)
Q Consensus       150 ~~~~lg~~~eA~~~~~~  166 (428)
                      ++...|+|++|+..+..
T Consensus        94 ~~~~~~~~d~Al~~L~~  110 (145)
T PF09976_consen   94 ILLQQGQYDEALATLQQ  110 (145)
T ss_pred             HHHHcCCHHHHHHHHHh
Confidence            99999999999999966

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.24  E-value=1.5e-05  Score=75.31  Aligned_cols=110  Identities=18%  Similarity=0.122  Sum_probs=93.6

Q ss_pred             CHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC---HHHHHHHH
Q 014256           89 KFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGK---LKESIEDS  164 (428)
Q Consensus        89 ~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~---~~eA~~~~  164 (428)
                      +.+..+.-++.-+..+|+ ..-|..+|.+|+.+|++..|...|.+|+++.|+++..+..+|.++.....   -.++...|
T Consensus       137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll  216 (287)
T COG4235         137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL  216 (287)
T ss_pred             cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence            356667777888889998 99999999999999999999999999999999999999999998887653   35899999


Q ss_pred             HHHHhhCCCcHHH----------HHHHHHHHHHHHHHHHhchhh
Q 014256          165 EFALRLEPQNQEI----------KKQLAEVKSLYEKEVFQKASK  198 (428)
Q Consensus       165 ~~al~l~P~~~~~----------~~~l~~a~~~~~~a~~~~~~~  198 (428)
                      ++++.++|.+..+          .+++.+|...++.-+...|.+
T Consensus       217 ~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~  260 (287)
T COG4235         217 RQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD  260 (287)
T ss_pred             HHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence            9999999999887          356777777777766665443

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.21  E-value=4e-06  Score=80.75  Aligned_cols=134  Identities=15%  Similarity=0.142  Sum_probs=103.5

Q ss_pred             cCCCccccCCCCcchHHHHHhhhhcCC----CCchHHHHHHHHHHHHHh-cCHHHHHHHHHHHHccCC---c----HHHH
Q 014256           43 KPSPSGNSYSRNYDPVSHISSSLMNEE----STPDATSEKELGNECFKQ-KKFKEAIDCYSRSIALSP---T----AVAY  110 (428)
Q Consensus        43 ~~~~~~y~~g~~~~Ai~~~~~al~~~p----~~~~a~~~~~lg~~~~~~-g~~~~Ai~~y~~al~~~p---~----~~~~  110 (428)
                      ...+.+|..+++++|+.+|++++.+.-    ....+..+..+|.+|... |++++|+++|.+|+.+..   .    ...+
T Consensus        79 ~~Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~  158 (282)
T PF14938_consen   79 EEAANCYKKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECL  158 (282)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             HHHHHHHHhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHH
Confidence            344445655699999999999988632    123456688999999999 999999999999998742   1    5678


Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHhcCCC------CH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q 014256          111 ANRAMAYLKLRRFQEAEDDCTEALNLDDR------YI-KAYSRRATARKELGKLKESIEDSEFALRLEPQNQE  176 (428)
Q Consensus       111 ~nla~~~~~~~~~~eA~~~~~~al~l~p~------~~-~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~  176 (428)
                      .+.|.++..+|+|++|+..|++.....-.      .+ ..++..+.|+...|++..|...+++....+|....
T Consensus       159 ~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~  231 (282)
T PF14938_consen  159 LKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFAS  231 (282)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTT
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence            89999999999999999999998865321      12 34677889999999999999999999999996544

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.20  E-value=8.9e-06  Score=67.26  Aligned_cols=97  Identities=15%  Similarity=0.145  Sum_probs=84.9

Q ss_pred             cCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-----HHHHHHHHHH
Q 014256           43 KPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-----AVAYANRAMA  116 (428)
Q Consensus        43 ~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-----~~~~~nla~~  116 (428)
                      ..-|.++ ..|+.+.|++.|.+++...|....+  +++++..+.-+|+.++|++.+++++++.-.     -.+|..+|..
T Consensus        47 El~~valaE~g~Ld~AlE~F~qal~l~P~raSa--yNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~l  124 (175)
T KOG4555|consen   47 ELKAIALAEAGDLDGALELFGQALCLAPERASA--YNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLL  124 (175)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHhcccchHh--hccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence            3334444 6799999999999999999998887  889999999999999999999999998643     4579999999


Q ss_pred             HHHhcCHHHHHHHHHHHHhcCCCCH
Q 014256          117 YLKLRRFQEAEDDCTEALNLDDRYI  141 (428)
Q Consensus       117 ~~~~~~~~eA~~~~~~al~l~p~~~  141 (428)
                      |..+|+-+.|..+|+.|.++.....
T Consensus       125 yRl~g~dd~AR~DFe~AA~LGS~FA  149 (175)
T KOG4555|consen  125 YRLLGNDDAARADFEAAAQLGSKFA  149 (175)
T ss_pred             HHHhCchHHHHHhHHHHHHhCCHHH
Confidence            9999999999999999988876653

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.20  E-value=1.8e-05  Score=74.21  Aligned_cols=144  Identities=15%  Similarity=0.125  Sum_probs=112.3

Q ss_pred             cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHH
Q 014256           50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  128 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~  128 (428)
                      +..+|.+||+++..-.+.+|.+..+  +-.+|.||+...+|..|.+||++.-.+.|. .......|..+++.+.|..|+.
T Consensus        22 ~d~ry~DaI~~l~s~~Er~p~~rAg--LSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALr   99 (459)
T KOG4340|consen   22 RDARYADAIQLLGSELERSPRSRAG--LSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALR   99 (459)
T ss_pred             HHhhHHHHHHHHHHHHhcCccchHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHH
Confidence            4568899999999999999887767  559999999999999999999999999998 6666777888888888888766


Q ss_pred             HHHHHH----------h--------------------cCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q 014256          129 DCTEAL----------N--------------------LDD--RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE  176 (428)
Q Consensus       129 ~~~~al----------~--------------------l~p--~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~  176 (428)
                      ......          +                    .-|  +.+....+.|.+.++.|+|++|++-|+.+++...-++-
T Consensus       100 V~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpl  179 (459)
T KOG4340|consen  100 VAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPL  179 (459)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCch
Confidence            443322          1                    123  44667888999999999999999999999999876654


Q ss_pred             H----------HHHHHHHHHHHHHHHHhc
Q 014256          177 I----------KKQLAEVKSLYEKEVFQK  195 (428)
Q Consensus       177 ~----------~~~l~~a~~~~~~a~~~~  195 (428)
                      +          .+++..|..+..+.+...
T Consensus       180 lAYniALaHy~~~qyasALk~iSEIieRG  208 (459)
T KOG4340|consen  180 LAYNLALAHYSSRQYASALKHISEIIERG  208 (459)
T ss_pred             hHHHHHHHHHhhhhHHHHHHHHHHHHHhh
Confidence            4          345555555555444433

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.11  E-value=2.6e-05  Score=72.76  Aligned_cols=96  Identities=11%  Similarity=0.071  Sum_probs=87.2

Q ss_pred             cCCCCcchHHHHHhhhhcCCCCc-hHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc----HHHHHHHHHHHHHhcCHH
Q 014256           50 SYSRNYDPVSHISSSLMNEESTP-DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQ  124 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~~~-~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~nla~~~~~~~~~~  124 (428)
                      ..|+|.+|...|...+...|+.. ...+++-+|.+++.+|+|.+|...|..++.-.|.    +..++.+|.|...+|+-+
T Consensus       153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d  232 (262)
T COG1729         153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD  232 (262)
T ss_pred             HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence            78999999999999999999753 2344778999999999999999999999998886    789999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCHHHHH
Q 014256          125 EAEDDCTEALNLDDRYIKAYS  145 (428)
Q Consensus       125 eA~~~~~~al~l~p~~~~a~~  145 (428)
                      +|...+.++++..|+...+..
T Consensus       233 ~A~atl~qv~k~YP~t~aA~~  253 (262)
T COG1729         233 EACATLQQVIKRYPGTDAAKL  253 (262)
T ss_pred             HHHHHHHHHHHHCCCCHHHHH
Confidence            999999999999999877644

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.11  E-value=1.1e-05  Score=85.84  Aligned_cols=128  Identities=13%  Similarity=0.049  Sum_probs=110.6

Q ss_pred             Cccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCH
Q 014256           46 PSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRF  123 (428)
Q Consensus        46 ~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~  123 (428)
                      ..-| ...+++.|......+-+..|.......|..+|..|.+.+++..|+..|+.++..+|. ...|..+|.+|...|+|
T Consensus       533 adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry  612 (1238)
T KOG1127|consen  533 ADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRY  612 (1238)
T ss_pred             HHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCce
Confidence            3334 566777777776665555655555555778999999999999999999999999998 88999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 014256          124 QEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQ  173 (428)
Q Consensus       124 ~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~  173 (428)
                      .-|+..|++|..++|.+..+.|..+.....+|+|.+|+..+...+.....
T Consensus       613 ~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~  662 (1238)
T KOG1127|consen  613 SHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSL  662 (1238)
T ss_pred             ehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999998876543

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.08  E-value=1.7e-05  Score=71.22  Aligned_cols=97  Identities=21%  Similarity=0.154  Sum_probs=89.3

Q ss_pred             CCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhc
Q 014256           44 PSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLR  121 (428)
Q Consensus        44 ~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~  121 (428)
                      .-|..| ..|-+.-|.-.|.+++.+.|..+.+  ++.+|.-+...|+|+.|.+.|+..++++|. .-+..|||..++--|
T Consensus        70 ERGvlYDSlGL~~LAR~DftQaLai~P~m~~v--fNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~g  147 (297)
T COG4785          70 ERGVLYDSLGLRALARNDFSQALAIRPDMPEV--FNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGG  147 (297)
T ss_pred             HhcchhhhhhHHHHHhhhhhhhhhcCCCcHHH--HHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecC
Confidence            345556 7888889999999999999998888  889999999999999999999999999999 778999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCCCHH
Q 014256          122 RFQEAEDDCTEALNLDDRYIK  142 (428)
Q Consensus       122 ~~~eA~~~~~~al~l~p~~~~  142 (428)
                      +|.-|.+++.+--+-||++|-
T Consensus       148 R~~LAq~d~~~fYQ~D~~DPf  168 (297)
T COG4785         148 RYKLAQDDLLAFYQDDPNDPF  168 (297)
T ss_pred             chHhhHHHHHHHHhcCCCChH
Confidence            999999999999999999974

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.06  E-value=9.5e-05  Score=70.90  Aligned_cols=80  Identities=16%  Similarity=0.146  Sum_probs=39.3

Q ss_pred             cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccC-CcHHHHHHHHHHHHHhcCHHHHHH
Q 014256           50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALS-PTAVAYANRAMAYLKLRRFQEAED  128 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~-p~~~~~~nla~~~~~~~~~~eA~~  128 (428)
                      ...+|..|+..++-.+..+.... ...-.-+|.|++..|+|++|+..|+-+.+.+ +....+.|+|.|++-+|.|.+|..
T Consensus        34 s~rDytGAislLefk~~~~~EEE-~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~  112 (557)
T KOG3785|consen   34 SNRDYTGAISLLEFKLNLDREEE-DSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKS  112 (557)
T ss_pred             hcccchhHHHHHHHhhccchhhh-HHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHH
Confidence            34455555555555544432221 1111234555566666666666665555533 225555555555555555555544


Q ss_pred             HH
Q 014256          129 DC  130 (428)
Q Consensus       129 ~~  130 (428)
                      ..
T Consensus       113 ~~  114 (557)
T KOG3785|consen  113 IA  114 (557)
T ss_pred             HH
Confidence            33

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.06  E-value=2.6e-05  Score=68.35  Aligned_cols=87  Identities=15%  Similarity=0.170  Sum_probs=69.4

Q ss_pred             CcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhc----------CHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcC
Q 014256           54 NYDPVSHISSSLMNEESTPDATSEKELGNECFKQK----------KFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRR  122 (428)
Q Consensus        54 ~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g----------~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~  122 (428)
                      ++.|.+.++.....+|.+.++  +.+.|.++....          -+++|+.-|++||.++|+ ..++.++|.+|..++.
T Consensus         7 FE~ark~aea~y~~nP~Dadn--L~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~   84 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADN--LTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF   84 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHH--HHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHhHHH--HHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence            466888999999999998766  678888777653          367899999999999999 8999999999998774


Q ss_pred             -----------HHHHHHHHHHHHhcCCCCHH
Q 014256          123 -----------FQEAEDDCTEALNLDDRYIK  142 (428)
Q Consensus       123 -----------~~eA~~~~~~al~l~p~~~~  142 (428)
                                 |++|..+|.+|...+|++..
T Consensus        85 l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~  115 (186)
T PF06552_consen   85 LTPDTAEAEEYFEKATEYFQKAVDEDPNNEL  115 (186)
T ss_dssp             H---HHHHHHHHHHHHHHHHHHHHH-TT-HH
T ss_pred             hcCChHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence                       88999999999999999854

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=98.03  E-value=1.2e-05  Score=78.29  Aligned_cols=132  Identities=17%  Similarity=0.148  Sum_probs=103.6

Q ss_pred             hhhcCCCccc-cCCCCcchHHHHHhhhhcCCCC----chHHHHHHHHHHHHHhcCHHHHHHHHHHHHccC----Cc---H
Q 014256           40 SAKKPSPSGN-SYSRNYDPVSHISSSLMNEEST----PDATSEKELGNECFKQKKFKEAIDCYSRSIALS----PT---A  107 (428)
Q Consensus        40 ~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~----~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~----p~---~  107 (428)
                      .++..+|+-| -+|+|++|+..-+.-|.+...+    .+-.++-++||++.-.|+|+.|+++|.+.+.+.    ..   +
T Consensus       196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA  275 (639)
T KOG1130|consen  196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA  275 (639)
T ss_pred             chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence            4566667666 8999999998877777664332    223346799999999999999999999876653    22   6


Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 014256          108 VAYANRAMAYLKLRRFQEAEDDCTEALNLDD------RYIKAYSRRATARKELGKLKESIEDSEFALRLE  171 (428)
Q Consensus       108 ~~~~nla~~~~~~~~~~eA~~~~~~al~l~p------~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~  171 (428)
                      ...+.+|..|.-+++|+.|+.++.+-+.+.-      ....+++.+|.++..+|..+.|+.+.+..+++.
T Consensus       276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s  345 (639)
T KOG1130|consen  276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSS  345 (639)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            6678899999999999999999988666542      346789999999999999999998888877653

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.00  E-value=6.2e-05  Score=62.58  Aligned_cols=86  Identities=21%  Similarity=0.172  Sum_probs=74.3

Q ss_pred             cCCCCcchHHHHHhhhhcCCCCc-hHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc----HHHHHHHHHHHHHhcCHH
Q 014256           50 SYSRNYDPVSHISSSLMNEESTP-DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQ  124 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~~~-~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~nla~~~~~~~~~~  124 (428)
                      ..|+.++|+.+|++++....... ....+..+|..+...|++++|+..+++++...|+    ..+...+++++..+|+++
T Consensus        13 ~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~   92 (120)
T PF12688_consen   13 SLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPK   92 (120)
T ss_pred             hcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHH
Confidence            78999999999999999764432 2445779999999999999999999999998776    456778999999999999


Q ss_pred             HHHHHHHHHHh
Q 014256          125 EAEDDCTEALN  135 (428)
Q Consensus       125 eA~~~~~~al~  135 (428)
                      +|+..+-.++.
T Consensus        93 eAl~~~l~~la  103 (120)
T PF12688_consen   93 EALEWLLEALA  103 (120)
T ss_pred             HHHHHHHHHHH
Confidence            99999988774

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.99  E-value=0.0003  Score=61.98  Aligned_cols=120  Identities=15%  Similarity=0.156  Sum_probs=97.4

Q ss_pred             CCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHcc-CCc-HHHHHHHHHHHHHhcCHHHHHHHH
Q 014256           53 RNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIAL-SPT-AVAYANRAMAYLKLRRFQEAEDDC  130 (428)
Q Consensus        53 ~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~-~p~-~~~~~nla~~~~~~~~~~eA~~~~  130 (428)
                      |++.......+.+...|...   ..+.+|+.+...|+|.+|...|.+++.- ..+ +..+..++.+.+..+++.+|...+
T Consensus        71 dP~R~~Rea~~~~~~ApTvq---nr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tL  147 (251)
T COG4700          71 DPERHLREATEELAIAPTVQ---NRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTL  147 (251)
T ss_pred             ChhHHHHHHHHHHhhchhHH---HHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHH
Confidence            44445555555555555433   3668999999999999999999999873 333 778889999999999999999999


Q ss_pred             HHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH
Q 014256          131 TEALNLDDR--YIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQ  175 (428)
Q Consensus       131 ~~al~l~p~--~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~  175 (428)
                      +...+.+|.  .+.....+|.++..+|++..|...|+.++...|+..
T Consensus       148 e~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~  194 (251)
T COG4700         148 EDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQ  194 (251)
T ss_pred             HHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHH
Confidence            999999884  466788889999999999999999999999998743

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.92  E-value=0.00028  Score=73.24  Aligned_cols=98  Identities=18%  Similarity=0.168  Sum_probs=91.3

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 014256           74 ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARK  152 (428)
Q Consensus        74 a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~  152 (428)
                      .+.++.++..|-..|++++|+++.+++|+..|. +.+|...|.++-+.|++.+|...++.|..+|..+-..-...+..+.
T Consensus       194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~L  273 (517)
T PF12569_consen  194 LWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLL  273 (517)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHH
Confidence            356788999999999999999999999999999 9999999999999999999999999999999999988888999999


Q ss_pred             HcCCHHHHHHHHHHHHhhC
Q 014256          153 ELGKLKESIEDSEFALRLE  171 (428)
Q Consensus       153 ~lg~~~eA~~~~~~al~l~  171 (428)
                      +.|+.++|...+..-.+-+
T Consensus       274 Ra~~~e~A~~~~~~Ftr~~  292 (517)
T PF12569_consen  274 RAGRIEEAEKTASLFTRED  292 (517)
T ss_pred             HCCCHHHHHHHHHhhcCCC
Confidence            9999999999887776655

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.91  E-value=1.7e-05  Score=50.10  Aligned_cols=32  Identities=38%  Similarity=0.493  Sum_probs=16.8

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 014256          108 VAYANRAMAYLKLRRFQEAEDDCTEALNLDDR  139 (428)
Q Consensus       108 ~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~  139 (428)
                      .+|+++|.+|..+|+|++|+.+|+++++++|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            34555555555555555555555555555554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.91  E-value=4e-05  Score=69.77  Aligned_cols=87  Identities=16%  Similarity=0.091  Sum_probs=79.1

Q ss_pred             cccCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHH
Q 014256           48 GNSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEA  126 (428)
Q Consensus        48 ~y~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA  126 (428)
                      +|.-..|+.|+.+|.+++.++|....-  +-+.+.++++..+|+.+.....++++++|+ ...++.+|.+.+....|++|
T Consensus        20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y--~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ea   97 (284)
T KOG4642|consen   20 CFIPKRYDDAIDCYSRAICINPTVASY--YTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEA   97 (284)
T ss_pred             ccchhhhchHHHHHHHHHhcCCCcchh--hhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHH
Confidence            346677899999999999999987655  779999999999999999999999999999 88999999999999999999


Q ss_pred             HHHHHHHHhc
Q 014256          127 EDDCTEALNL  136 (428)
Q Consensus       127 ~~~~~~al~l  136 (428)
                      +..+.+|..+
T Consensus        98 I~~Lqra~sl  107 (284)
T KOG4642|consen   98 IKVLQRAYSL  107 (284)
T ss_pred             HHHHHHHHHH
Confidence            9999998654

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.90  E-value=0.00027  Score=68.15  Aligned_cols=125  Identities=14%  Similarity=0.047  Sum_probs=94.5

Q ss_pred             cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhc--CHHHH
Q 014256           50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLR--RFQEA  126 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~--~~~eA  126 (428)
                      ..|++++|+..+.+.     ...+.  ......+|.+.++++.|...+...-+.+.+ ..+...-|.+.+..|  .+.+|
T Consensus       114 ~~~~~~~AL~~l~~~-----~~lE~--~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A  186 (290)
T PF04733_consen  114 HEGDYEEALKLLHKG-----GSLEL--LALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDA  186 (290)
T ss_dssp             CCCHHHHHHCCCTTT-----TCHHH--HHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHH
T ss_pred             HcCCHHHHHHHHHcc-----CcccH--HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHH
Confidence            567777777766554     22333  446778999999999999999999888877 334444455555555  69999


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 014256          127 EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQL  181 (428)
Q Consensus       127 ~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l  181 (428)
                      ...|+......+..+..+..+|.++..+|+|++|...+.+++..+|++++..-++
T Consensus       187 ~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNl  241 (290)
T PF04733_consen  187 FYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANL  241 (290)
T ss_dssp             HHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHH
T ss_pred             HHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHH
Confidence            9999998888888899999999999999999999999999999999998875444

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PLN03218 maturation of RBCL 1; Provisional

Probab=97.89  E-value=0.00021  Score=80.25  Aligned_cols=119  Identities=12%  Similarity=0.061  Sum_probs=62.0

Q ss_pred             cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHcc--CCcHHHHHHHHHHHHHhcCHHHHH
Q 014256           50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIAL--SPTAVAYANRAMAYLKLRRFQEAE  127 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~--~p~~~~~~nla~~~~~~~~~~eA~  127 (428)
                      +.|++++|...|.+...... .+....|..+...|.+.|++++|+..|.+....  .|+...|..+..+|.+.|++++|.
T Consensus       484 k~G~vd~A~~vf~eM~~~Gv-~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~  562 (1060)
T PLN03218        484 KSGKVDAMFEVFHEMVNAGV-EANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAF  562 (1060)
T ss_pred             hCcCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence            55556666666655554321 112233555555555666666666655555443  244555555555555555565555


Q ss_pred             HHHHHHHh----cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 014256          128 DDCTEALN----LDDRYIKAYSRRATARKELGKLKESIEDSEFALRL  170 (428)
Q Consensus       128 ~~~~~al~----l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l  170 (428)
                      +.+.+...    +.|+ ...|..+-.+|.+.|++++|...|+...+.
T Consensus       563 ~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~  608 (1060)
T PLN03218        563 DVLAEMKAETHPIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEY  608 (1060)
T ss_pred             HHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence            55555543    2232 334444555555555555555555555544

>PLN03218 maturation of RBCL 1; Provisional

Probab=97.88  E-value=0.00031  Score=78.88  Aligned_cols=118  Identities=12%  Similarity=-0.013  Sum_probs=59.1

Q ss_pred             cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHcc--CCcHHHHHHHHHHHHHhcCHHHHH
Q 014256           50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIAL--SPTAVAYANRAMAYLKLRRFQEAE  127 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~--~p~~~~~~nla~~~~~~~~~~eA~  127 (428)
                      +.|++++|.+.|+.....+.. +....|..+...|.+.|++++|+..|.+....  .|+...|..+..+|.+.|++++|.
T Consensus       591 k~G~ldeA~elf~~M~e~gi~-p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~  669 (1060)
T PLN03218        591 NAGQVDRAKEVYQMIHEYNIK-GTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAF  669 (1060)
T ss_pred             HCCCHHHHHHHHHHHHHcCCC-CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHH
Confidence            445555555555555444311 11122445555555555555555555555443  244445555555555555555555


Q ss_pred             HHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 014256          128 DDCTEALNLD-DRYIKAYSRRATARKELGKLKESIEDSEFAL  168 (428)
Q Consensus       128 ~~~~~al~l~-p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al  168 (428)
                      +.+....+.. +.+...|..+..+|.+.|++++|...|+...
T Consensus       670 ~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~  711 (1060)
T PLN03218        670 EILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIK  711 (1060)
T ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            5555555443 2234455555555555555555555555543

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.88  E-value=0.00048  Score=63.92  Aligned_cols=139  Identities=22%  Similarity=0.239  Sum_probs=102.6

Q ss_pred             cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHH----hcCHHHHHHHHHHHHc-cCCcHHHHHHHHHHHHHhcCHH
Q 014256           50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFK----QKKFKEAIDCYSRSIA-LSPTAVAYANRAMAYLKLRRFQ  124 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~----~g~~~~Ai~~y~~al~-~~p~~~~~~nla~~~~~~~~~~  124 (428)
                      +..+.+-|...+.+...++.+    ..+.+++..+.+    .+++.+|.-+|++.-+ ..|.+...+..|.|++.+|+|+
T Consensus       149 k~~r~d~A~~~lk~mq~ided----~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~e  224 (299)
T KOG3081|consen  149 KMHRFDLAEKELKKMQQIDED----ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYE  224 (299)
T ss_pred             HHHHHHHHHHHHHHHHccchH----HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHH
Confidence            455556666666666665532    124566666665    3578899999999888 4566888899999999999999


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hhCCCcHHHHHHHHHHHHHHHHHHH
Q 014256          125 EAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFAL-RLEPQNQEIKKQLAEVKSLYEKEVF  193 (428)
Q Consensus       125 eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al-~l~P~~~~~~~~l~~a~~~~~~a~~  193 (428)
                      +|...+..++..+++++.++.|+-.+-..+|+-.++...+-.-+ ..+|+++- ..++.+...-|++...
T Consensus       225 eAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~-vk~~~ekeaeFDrl~~  293 (299)
T KOG3081|consen  225 EAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPF-VKHLNEKEAEFDRLVL  293 (299)
T ss_pred             HHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchH-HHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999877766555444 45565554 4456666666665543

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.88  E-value=2.8e-05  Score=52.46  Aligned_cols=42  Identities=33%  Similarity=0.283  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 014256          108 VAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRAT  149 (428)
Q Consensus       108 ~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~  149 (428)
                      .++..+|.+|..+|++++|+..|+++++.+|+++.++..+|.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            456677777777777777777777777777777777777664

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=97.87  E-value=1.4e-05  Score=79.45  Aligned_cols=105  Identities=19%  Similarity=0.108  Sum_probs=94.3

Q ss_pred             ccccCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHH
Q 014256           47 SGNSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQE  125 (428)
Q Consensus        47 ~~y~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~e  125 (428)
                      ..+..++++.|+..|.+++.++|+....  +-+++.++++.++|..|+..+.++|+++|. ..+|+.+|.+.+.+++|.+
T Consensus        13 ~~l~~~~fd~avdlysKaI~ldpnca~~--~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~   90 (476)
T KOG0376|consen   13 EALKDKVFDVAVDLYSKAIELDPNCAIY--FANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKK   90 (476)
T ss_pred             hhcccchHHHHHHHHHHHHhcCCcceee--echhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHH
Confidence            3446788999999999999999987766  558999999999999999999999999999 8899999999999999999


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 014256          126 AEDDCTEALNLDDRYIKAYSRRATARKE  153 (428)
Q Consensus       126 A~~~~~~al~l~p~~~~a~~~lg~~~~~  153 (428)
                      |..++.....+.|+++.+.-.+..|-..
T Consensus        91 A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~  118 (476)
T KOG0376|consen   91 ALLDLEKVKKLAPNDPDATRKIDECNKI  118 (476)
T ss_pred             HHHHHHHhhhcCcCcHHHHHHHHHHHHH
Confidence            9999999999999999887666665543

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.84  E-value=1.6e-05  Score=50.45  Aligned_cols=32  Identities=25%  Similarity=0.366  Sum_probs=25.9

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 014256          130 CTEALNLDDRYIKAYSRRATARKELGKLKESI  161 (428)
Q Consensus       130 ~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~  161 (428)
                      |++||+++|+++.+|+++|.+|...|++++|+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            67788888888888888888888888887775

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.84  E-value=0.00059  Score=60.32  Aligned_cols=122  Identities=23%  Similarity=0.306  Sum_probs=90.2

Q ss_pred             cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHH-HHHHhcCHHHHHHHHHHHHccCC---c-HHHHHHHHHHHHHhcCHH
Q 014256           50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGN-ECFKQKKFKEAIDCYSRSIALSP---T-AVAYANRAMAYLKLRRFQ  124 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~-~~~~~g~~~~Ai~~y~~al~~~p---~-~~~~~nla~~~~~~~~~~  124 (428)
                      ..+++..++..+..++...+.......  ..+. ++...|+++.|+.+|.+++..+|   . ...+..++..+...++++
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (291)
T COG0457         107 ALGKYEEALELLEKALALDPDPDLAEA--LLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYE  184 (291)
T ss_pred             HHhhHHHHHHHHHHHHcCCCCcchHHH--HHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHH
Confidence            556677788888888776665533322  3344 77788888888888888877666   2 555666666677778888


Q ss_pred             HHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 014256          125 EAEDDCTEALNLDDR-YIKAYSRRATARKELGKLKESIEDSEFALRLEPQ  173 (428)
Q Consensus       125 eA~~~~~~al~l~p~-~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~  173 (428)
                      .|+..+.+++...+. ....+..++.++...+.+..|...+..++...|.
T Consensus       185 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  234 (291)
T COG0457         185 EALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD  234 (291)
T ss_pred             HHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc
Confidence            888888888888887 6778888888888888888888888888888776

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=97.80  E-value=0.00028  Score=76.71  Aligned_cols=148  Identities=14%  Similarity=0.079  Sum_probs=106.4

Q ss_pred             hcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHcc---CCcHHHHHHHHHHH
Q 014256           42 KKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIAL---SPTAVAYANRAMAY  117 (428)
Q Consensus        42 ~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~---~p~~~~~~nla~~~  117 (428)
                      +..+..+| ..|+.++|++.|++.+...- .+....+..+...|.+.|.+++|..+|....+.   .|+...|..+..+|
T Consensus       394 ~n~lI~~y~~~G~~~~A~~lf~~M~~~g~-~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l  472 (697)
T PLN03081        394 WNALIAGYGNHGRGTKAVEMFERMIAEGV-APNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELL  472 (697)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHH
Confidence            34455566 77888999999988776432 223444677778888888888888888888653   35566788888888


Q ss_pred             HHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH----------HHHHHHHHHH
Q 014256          118 LKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI----------KKQLAEVKSL  187 (428)
Q Consensus       118 ~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~----------~~~l~~a~~~  187 (428)
                      .+.|++++|.+.+++. ...| +...|..+..++...|+++.|...+++.+.++|++...          .+++++|.+.
T Consensus       473 ~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v  550 (697)
T PLN03081        473 GREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKV  550 (697)
T ss_pred             HhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHH
Confidence            8888888888887654 2333 35567778888888888888888888888888875422          3556677776


Q ss_pred             HHHHH
Q 014256          188 YEKEV  192 (428)
Q Consensus       188 ~~~a~  192 (428)
                      ++...
T Consensus       551 ~~~m~  555 (697)
T PLN03081        551 VETLK  555 (697)
T ss_pred             HHHHH
Confidence            66543

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.79  E-value=0.00026  Score=62.32  Aligned_cols=123  Identities=16%  Similarity=0.119  Sum_probs=102.4

Q ss_pred             CCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc---HHHHHHHHHHHHH
Q 014256           44 PSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT---AVAYANRAMAYLK  119 (428)
Q Consensus        44 ~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~---~~~~~nla~~~~~  119 (428)
                      ++++++ ..|++.+|...|++++.---. -+...+..+++..+..+++..|...++...+.+|.   +..+..+|.++-.
T Consensus        94 rLa~al~elGr~~EA~~hy~qalsG~fA-~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa  172 (251)
T COG4700          94 RLANALAELGRYHEAVPHYQQALSGIFA-HDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAA  172 (251)
T ss_pred             HHHHHHHHhhhhhhhHHHHHHHhccccC-CCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHh
Confidence            345555 889999999999999875321 23334778999999999999999999999999987   7778888999999


Q ss_pred             hcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 014256          120 LRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFAL  168 (428)
Q Consensus       120 ~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al  168 (428)
                      +|++.+|+..|+.++...|. +.+....+..+..+|+..+|..-+..+.
T Consensus       173 ~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~  220 (251)
T COG4700         173 QGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVV  220 (251)
T ss_pred             cCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence            99999999999999999887 5667778899999998888876665554

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.77  E-value=0.0017  Score=60.30  Aligned_cols=141  Identities=17%  Similarity=0.148  Sum_probs=104.4

Q ss_pred             ccCCCCcchHHHHHhhhhcCCCCchH-HHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc----HHHHHHHHHHHHHhc--
Q 014256           49 NSYSRNYDPVSHISSSLMNEESTPDA-TSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLR--  121 (428)
Q Consensus        49 y~~g~~~~Ai~~~~~al~~~p~~~~a-~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~nla~~~~~~~--  121 (428)
                      +..|++.+|+..|+.+....|..+.+ .+...++.++++.++|++|+....+-+.+.|.    .-+++.+|.+++..=  
T Consensus        45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~  124 (254)
T COG4105          45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDD  124 (254)
T ss_pred             HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCc
Confidence            47789999999999998888765422 23668899999999999999999999998876    456788888877643  


Q ss_pred             ------CHHHHHHHHHHHHhcCCCCHH---H------------H--HHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHH
Q 014256          122 ------RFQEAEDDCTEALNLDDRYIK---A------------Y--SRRATARKELGKLKESIEDSEFALRLEPQNQEIK  178 (428)
Q Consensus       122 ------~~~eA~~~~~~al~l~p~~~~---a------------~--~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~  178 (428)
                            .-.+|...+...+...|+...   +            .  ...|..|.+.|.|-.|+.-++.+++-.|+.....
T Consensus       125 ~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~  204 (254)
T COG4105         125 VTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVR  204 (254)
T ss_pred             cccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchH
Confidence                  256788888888988886521   1            1  1236677788899999999999998888776665


Q ss_pred             HHHHHHHHHHH
Q 014256          179 KQLAEVKSLYE  189 (428)
Q Consensus       179 ~~l~~a~~~~~  189 (428)
                      .-+....+.|.
T Consensus       205 eaL~~l~eaY~  215 (254)
T COG4105         205 EALARLEEAYY  215 (254)
T ss_pred             HHHHHHHHHHH
Confidence            54444444443

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.77  E-value=0.0005  Score=70.05  Aligned_cols=47  Identities=9%  Similarity=0.194  Sum_probs=26.4

Q ss_pred             cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 014256           50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSI  101 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al  101 (428)
                      +.+..++|+..+.-   .++.....  +-..|.++++.|+|++|+..|+..+
T Consensus        91 rlnk~Dealk~~~~---~~~~~~~l--l~L~AQvlYrl~~ydealdiY~~L~  137 (652)
T KOG2376|consen   91 RLNKLDEALKTLKG---LDRLDDKL--LELRAQVLYRLERYDEALDIYQHLA  137 (652)
T ss_pred             HcccHHHHHHHHhc---ccccchHH--HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            56666666666662   22222222  4456666666677777766666553

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.76  E-value=6.3e-05  Score=47.47  Aligned_cols=34  Identities=35%  Similarity=0.489  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 014256          141 IKAYSRRATARKELGKLKESIEDSEFALRLEPQN  174 (428)
Q Consensus       141 ~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~  174 (428)
                      +.+|+++|.++..+|++++|+..|+++++++|++
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            4689999999999999999999999999999975

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=97.74  E-value=0.00013  Score=73.29  Aligned_cols=102  Identities=29%  Similarity=0.250  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhc---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 014256           76 SEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLR---RFQEAEDDCTEALNLDDRYIKAYSRRATAR  151 (428)
Q Consensus        76 ~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~---~~~eA~~~~~~al~l~p~~~~a~~~lg~~~  151 (428)
                      .++..|+-.+..+.+..|+..|.+++...|. ..+|.|+|.++++.+   +--.|+.+|..|++++|...+++++++.++
T Consensus       376 ~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL  455 (758)
T KOG1310|consen  376 KFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARAL  455 (758)
T ss_pred             HHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHH
Confidence            3677888888888999999999999999999 788999999999864   677899999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCcHHH
Q 014256          152 KELGKLKESIEDSEFALRLEPQNQEI  177 (428)
Q Consensus       152 ~~lg~~~eA~~~~~~al~l~P~~~~~  177 (428)
                      ..++++.+|++....+....|.+...
T Consensus       456 ~el~r~~eal~~~~alq~~~Ptd~a~  481 (758)
T KOG1310|consen  456 NELTRYLEALSCHWALQMSFPTDVAR  481 (758)
T ss_pred             HHHhhHHHhhhhHHHHhhcCchhhhh
Confidence            99999999999988888888865543

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.73  E-value=0.0021  Score=59.77  Aligned_cols=103  Identities=16%  Similarity=0.072  Sum_probs=89.9

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCH---HHHHH
Q 014256           74 ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYI---KAYSR  146 (428)
Q Consensus        74 a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~---~a~~~  146 (428)
                      +..|++.|...++.|+|.+|+..|+.....+|.    ..+...++.++++.++|++|+...++-+++.|.++   .+++.
T Consensus        34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl  113 (254)
T COG4105          34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL  113 (254)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence            455899999999999999999999999999886    67899999999999999999999999999999775   56888


Q ss_pred             HHHHHHHcC--------CHHHHHHHHHHHHhhCCCcHH
Q 014256          147 RATARKELG--------KLKESIEDSEFALRLEPQNQE  176 (428)
Q Consensus       147 lg~~~~~lg--------~~~eA~~~~~~al~l~P~~~~  176 (428)
                      +|.++...=        -..+|+..|..++.-.|+..-
T Consensus       114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Y  151 (254)
T COG4105         114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRY  151 (254)
T ss_pred             HHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcc
Confidence            888876542        235899999999999998743

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=97.72  E-value=0.00027  Score=76.83  Aligned_cols=143  Identities=9%  Similarity=0.008  Sum_probs=112.3

Q ss_pred             Cccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHcc--CCcHHHHHHHHHHHHHhcC
Q 014256           46 PSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIAL--SPTAVAYANRAMAYLKLRR  122 (428)
Q Consensus        46 ~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~--~p~~~~~~nla~~~~~~~~  122 (428)
                      ...| +.|++++|...|++....     ....|..+...|.+.|++++|+..|.+....  .|+..+|..+..++.+.|+
T Consensus       266 i~~y~k~g~~~~A~~vf~~m~~~-----~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~  340 (697)
T PLN03081        266 IDMYSKCGDIEDARCVFDGMPEK-----TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLAL  340 (697)
T ss_pred             HHHHHHCCCHHHHHHHHHhCCCC-----ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence            3445 789999999999886432     2344889999999999999999999998764  4778889999999999999


Q ss_pred             HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH--H-----HHHHHHHHHHHHHHHH
Q 014256          123 FQEAEDDCTEALNLD-DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE--I-----KKQLAEVKSLYEKEVF  193 (428)
Q Consensus       123 ~~eA~~~~~~al~l~-p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~--~-----~~~l~~a~~~~~~a~~  193 (428)
                      +++|.+.+...++.. +.+..++..+..+|.+.|++++|...|++..+.+...-.  +     .+..++|.++|++...
T Consensus       341 ~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~  419 (697)
T PLN03081        341 LEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIA  419 (697)
T ss_pred             hHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            999999999998876 567778888999999999999999999887542221111  1     3456777777776543

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.71  E-value=0.00033  Score=72.65  Aligned_cols=129  Identities=12%  Similarity=-0.009  Sum_probs=105.8

Q ss_pred             hhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCcHHHHHH-HHHHHH
Q 014256           41 AKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYAN-RAMAYL  118 (428)
Q Consensus        41 a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~~~~~~n-la~~~~  118 (428)
                      ++-.+++.| ..|++++|+.+.++++...|...+.  +...|.++-..|++.+|.++++.|..+|+.....++ .+..++
T Consensus       196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~el--y~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~L  273 (517)
T PF12569_consen  196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVEL--YMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLL  273 (517)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHH--HHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHH
Confidence            334556667 8999999999999999999998776  779999999999999999999999999987554444 467788


Q ss_pred             HhcCHHHHHHHHHHHHhcCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 014256          119 KLRRFQEAEDDCTEALNLDDRY---------IKAYSRRATARKELGKLKESIEDSEFALRLE  171 (428)
Q Consensus       119 ~~~~~~eA~~~~~~al~l~p~~---------~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~  171 (428)
                      +.|+.++|+..+..-.+-+.+.         .......|.+|.+.|++..|+..|..+.+..
T Consensus       274 Ra~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f  335 (517)
T PF12569_consen  274 RAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHF  335 (517)
T ss_pred             HCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            8899999999998877665211         1223445899999999999999999998764

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.71  E-value=0.00053  Score=63.49  Aligned_cols=126  Identities=21%  Similarity=0.193  Sum_probs=108.6

Q ss_pred             cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHc----cCCc---HHHHHHHHHHHHHhcC
Q 014256           50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIA----LSPT---AVAYANRAMAYLKLRR  122 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~----~~p~---~~~~~nla~~~~~~~~  122 (428)
                      ..|+|.-....+.++++.+|....+ ....+|...++.||.+.|..+|++.-+    ++.-   .....|.+.+|+..++
T Consensus       189 G~kEy~iS~d~~~~vi~~~~e~~p~-L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn  267 (366)
T KOG2796|consen  189 GMKEYVLSVDAYHSVIKYYPEQEPQ-LLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNN  267 (366)
T ss_pred             cchhhhhhHHHHHHHHHhCCcccHH-HHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccc
Confidence            7889999999999999988543322 356899999999999999999995433    3322   5567888999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q 014256          123 FQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE  176 (428)
Q Consensus       123 ~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~  176 (428)
                      |..|...+++++..||.++.+..+.|.|+..+|+...|+..++.++.+.|...-
T Consensus       268 ~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l  321 (366)
T KOG2796|consen  268 FAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYL  321 (366)
T ss_pred             hHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccch
Confidence            999999999999999999999999999999999999999999999999997543

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.70  E-value=0.0011  Score=65.90  Aligned_cols=147  Identities=15%  Similarity=0.119  Sum_probs=127.7

Q ss_pred             cCCCCcchHHHHHhhhhcCCCC--chHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCcHHHHHHHHHHHHHhcCHHHHH
Q 014256           50 SYSRNYDPVSHISSSLMNEEST--PDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAE  127 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~~--~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~~~~~~nla~~~~~~~~~~eA~  127 (428)
                      ...+.+.+.+.|+.+|.+-|+.  .-+..|...+....++.+...|...+..||...|...++-..-..-+++++++.+.
T Consensus       378 e~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcR  457 (677)
T KOG1915|consen  378 EAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCR  457 (677)
T ss_pred             HhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHH
Confidence            5788999999999999999874  34555888999999999999999999999999999777777777888999999999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc-HHH-----------HHHHHHHHHHHHHHHHhc
Q 014256          128 DDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN-QEI-----------KKQLAEVKSLYEKEVFQK  195 (428)
Q Consensus       128 ~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~-~~~-----------~~~l~~a~~~~~~a~~~~  195 (428)
                      ..|++-|...|.+..+|...|..-..+|+.+.|...|+-|+....-+ +++           .++++.|..+|++.+...
T Consensus       458 kLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt  537 (677)
T KOG1915|consen  458 KLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT  537 (677)
T ss_pred             HHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999998764322 222           578889999999888766


Q ss_pred             h
Q 014256          196 A  196 (428)
Q Consensus       196 ~  196 (428)
                      +
T Consensus       538 ~  538 (677)
T KOG1915|consen  538 Q  538 (677)
T ss_pred             c
Confidence            3

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.67  E-value=0.0015  Score=57.66  Aligned_cols=124  Identities=27%  Similarity=0.342  Sum_probs=110.8

Q ss_pred             cCCCCcchHHHHHhhhhcCCC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc--HHHHHHHHHHHHHhcCHHHH
Q 014256           50 SYSRNYDPVSHISSSLMNEES-TPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT--AVAYANRAMAYLKLRRFQEA  126 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~-~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~--~~~~~nla~~~~~~~~~~eA  126 (428)
                      ..|+++.|+..|.+++...|. ..........+..+...+++..|+..+.+++...+.  ...+.+++.++...+++..|
T Consensus       142 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  221 (291)
T COG0457         142 ELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEA  221 (291)
T ss_pred             HcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHH
Confidence            889999999999999887663 334444667777788999999999999999999887  67899999999999999999


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 014256          127 EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQ  173 (428)
Q Consensus       127 ~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~  173 (428)
                      ...+..++...|.....+..++..+...|.+.++...+.+++...|.
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (291)
T COG0457         222 LEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD  268 (291)
T ss_pred             HHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence            99999999999998888888998888888899999999999999997

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.66  E-value=0.00011  Score=46.21  Aligned_cols=29  Identities=38%  Similarity=0.456  Sum_probs=11.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 014256          144 YSRRATARKELGKLKESIEDSEFALRLEP  172 (428)
Q Consensus       144 ~~~lg~~~~~lg~~~eA~~~~~~al~l~P  172 (428)
                      ++.+|.++..+|++++|+..|+++++++|
T Consensus         4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p   32 (34)
T PF07719_consen    4 WYYLGQAYYQLGNYEEAIEYFEKALELDP   32 (34)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence            33444444444444444444444444444

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.63  E-value=0.00014  Score=45.62  Aligned_cols=34  Identities=32%  Similarity=0.395  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 014256          107 AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY  140 (428)
Q Consensus       107 ~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~  140 (428)
                      +.+|+.+|.+|+.+|+|++|+.+|.+++.++|+|
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            4679999999999999999999999999999986

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.62  E-value=0.00035  Score=66.59  Aligned_cols=93  Identities=26%  Similarity=0.321  Sum_probs=81.9

Q ss_pred             ccCCCCcchHHHHHhhhhcCCCC--chHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHH
Q 014256           49 NSYSRNYDPVSHISSSLMNEEST--PDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQE  125 (428)
Q Consensus        49 y~~g~~~~Ai~~~~~al~~~p~~--~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~e  125 (428)
                      |+.++|..|+..|.+.|+..-.+  ..+..|.+++-+.+-.|+|..|+....+++.++|. ..+|+.-|.|++.+.++.+
T Consensus        92 fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~  171 (390)
T KOG0551|consen   92 FKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAE  171 (390)
T ss_pred             HHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHH
Confidence            37788999999999999875443  34667889999999999999999999999999999 8899999999999999999


Q ss_pred             HHHHHHHHHhcCCCCH
Q 014256          126 AEDDCTEALNLDDRYI  141 (428)
Q Consensus       126 A~~~~~~al~l~p~~~  141 (428)
                      |..+|+..+.++...-
T Consensus       172 a~nw~ee~~~~d~e~K  187 (390)
T KOG0551|consen  172 AVNWCEEGLQIDDEAK  187 (390)
T ss_pred             HHHHHhhhhhhhHHHH
Confidence            9999999988776543

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.60  E-value=5.5e-05  Score=47.98  Aligned_cols=32  Identities=44%  Similarity=0.740  Sum_probs=24.5

Q ss_pred             HHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHH
Q 014256           96 CYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE  127 (428)
Q Consensus        96 ~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~  127 (428)
                      +|+++|+++|+ +.+|+++|.+|...|++++|+
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            46777777877 777888888888888877775

>PLN03077 Protein ECB2; Provisional

Probab=97.57  E-value=0.00058  Score=76.02  Aligned_cols=143  Identities=13%  Similarity=0.072  Sum_probs=108.0

Q ss_pred             cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHcc--CCcHHHHHHHHHHHHHhcCHHHHH
Q 014256           50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIAL--SPTAVAYANRAMAYLKLRRFQEAE  127 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~--~p~~~~~~nla~~~~~~~~~~eA~  127 (428)
                      +.|++++|...|+..   . .  ....|..+...|.+.|+.++|+..|++..+.  .|+...|..+-.++.+.|.+++|.
T Consensus       536 k~G~~~~A~~~f~~~---~-~--d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~  609 (857)
T PLN03077        536 RCGRMNYAWNQFNSH---E-K--DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGL  609 (857)
T ss_pred             HcCCHHHHHHHHHhc---C-C--ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHH
Confidence            778999999998886   2 2  2344889999999999999999999988774  477777777777888999999999


Q ss_pred             HHHHHHHhcCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH---------HHHHHHHHHHHHHHHHhch
Q 014256          128 DDCTEALNLDD--RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI---------KKQLAEVKSLYEKEVFQKA  196 (428)
Q Consensus       128 ~~~~~al~l~p--~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~---------~~~l~~a~~~~~~a~~~~~  196 (428)
                      ..|+......+  -+...|..+..++.+.|++++|...+++. .+.|+....         .++.+.+....++.++++|
T Consensus       610 ~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p  688 (857)
T PLN03077        610 EYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPDPAVWGALLNACRIHRHVELGELAAQHIFELDP  688 (857)
T ss_pred             HHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Confidence            99999884433  23567888999999999999999998875 356653321         2334445555566666776


Q ss_pred             hhh
Q 014256          197 SKT  199 (428)
Q Consensus       197 ~~~  199 (428)
                      .+.
T Consensus       689 ~~~  691 (857)
T PLN03077        689 NSV  691 (857)
T ss_pred             CCc
Confidence            654

>PLN03077 Protein ECB2; Provisional

Probab=97.55  E-value=0.00074  Score=75.18  Aligned_cols=133  Identities=11%  Similarity=0.102  Sum_probs=106.1

Q ss_pred             hcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHc---cCCcHHHHHHHHHHH
Q 014256           42 KKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIA---LSPTAVAYANRAMAY  117 (428)
Q Consensus        42 ~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~---~~p~~~~~~nla~~~  117 (428)
                      +..+..+| ..|+.++|+..|++...... .+....+..+-..|.+.|.+++|..+|.....   +.|+...|..+..++
T Consensus       557 ~n~lI~~~~~~G~~~~A~~lf~~M~~~g~-~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l  635 (857)
T PLN03077        557 WNILLTGYVAHGKGSMAVELFNRMVESGV-NPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLL  635 (857)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence            34455566 88999999999999876431 11223355666789999999999999999874   357788899999999


Q ss_pred             HHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH
Q 014256          118 LKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI  177 (428)
Q Consensus       118 ~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~  177 (428)
                      .+.|++++|.+.+++. .+.|+ +..|..+-.++...|+.+.+....+++++++|++...
T Consensus       636 ~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~  693 (857)
T PLN03077        636 GRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGY  693 (857)
T ss_pred             HhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcch
Confidence            9999999999999875 35555 5566667677888999999999999999999998655

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.52  E-value=0.00023  Score=47.88  Aligned_cols=42  Identities=31%  Similarity=0.349  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 014256          142 KAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAE  183 (428)
Q Consensus       142 ~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~  183 (428)
                      .+++.+|.+|..+|++++|+..|+++++.+|+++.++..+.+
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            578999999999999999999999999999999998876653

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.51  E-value=0.0021  Score=64.42  Aligned_cols=104  Identities=22%  Similarity=0.119  Sum_probs=92.1

Q ss_pred             HHHHHHhcCHHHHHHHHHHHHccCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Q 014256           81 GNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKES  160 (428)
Q Consensus        81 g~~~~~~g~~~~Ai~~y~~al~~~p~~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA  160 (428)
                      -..+-..++++.|++.+++..+.+|+.  ...++.+++..++..+|++.+.+++...|.+...+...+..+...|+++.|
T Consensus       176 l~~l~~t~~~~~ai~lle~L~~~~pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lA  253 (395)
T PF09295_consen  176 LKYLSLTQRYDEAIELLEKLRERDPEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELA  253 (395)
T ss_pred             HHHHhhcccHHHHHHHHHHHHhcCCcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Confidence            344455689999999999999999873  344788899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhCCCcHHHHHHHHHHHH
Q 014256          161 IEDSEFALRLEPQNQEIKKQLAEVKS  186 (428)
Q Consensus       161 ~~~~~~al~l~P~~~~~~~~l~~a~~  186 (428)
                      +...++++.+.|++...+..+.++-.
T Consensus       254 L~iAk~av~lsP~~f~~W~~La~~Yi  279 (395)
T PF09295_consen  254 LEIAKKAVELSPSEFETWYQLAECYI  279 (395)
T ss_pred             HHHHHHHHHhCchhHHHHHHHHHHHH
Confidence            99999999999999999887776643

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.48  E-value=0.0014  Score=59.83  Aligned_cols=139  Identities=10%  Similarity=0.036  Sum_probs=104.1

Q ss_pred             hhhhcCCCccccCCCCcchHHHHHhhhhcCCCCc----hHHHHHHHHHHHHHh-cCHHHHHHHHHHHHccCCc-------
Q 014256           39 KSAKKPSPSGNSYSRNYDPVSHISSSLMNEESTP----DATSEKELGNECFKQ-KKFKEAIDCYSRSIALSPT-------  106 (428)
Q Consensus        39 ~~a~~~~~~~y~~g~~~~Ai~~~~~al~~~p~~~----~a~~~~~lg~~~~~~-g~~~~Ai~~y~~al~~~p~-------  106 (428)
                      ...+...+++|+.+++.+|+.++++++.+..+..    .+..+..+|..|... .++++||.+|+.+-+....       
T Consensus        74 at~YveA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssA  153 (288)
T KOG1586|consen   74 ATTYVEAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSA  153 (288)
T ss_pred             HHHHHHHHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhH
Confidence            3444556677888899999999999998864432    234466788888876 8999999999999886543       


Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH
Q 014256          107 AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYI-------KAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI  177 (428)
Q Consensus       107 ~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~-------~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~  177 (428)
                      ...+...|..-..+++|.+|+..|++.....-++.       .-++.-|.|+...++.-.+...+++...++|.....
T Consensus       154 NKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ds  231 (288)
T KOG1586|consen  154 NKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDS  231 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccccc
Confidence            23444456666678899999999999876654442       235566788888888888999999999999986654

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.48  E-value=0.0014  Score=63.21  Aligned_cols=85  Identities=21%  Similarity=0.177  Sum_probs=73.2

Q ss_pred             HHHHhcCHHHHHHHHHHHHccCCc--HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Q 014256           83 ECFKQKKFKEAIDCYSRSIALSPT--AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKES  160 (428)
Q Consensus        83 ~~~~~g~~~~Ai~~y~~al~~~p~--~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA  160 (428)
                      .+....+|..|+..++-.+..+..  ...-..+|.|++++|+|++|...|+.+..-+.-+.+.+.++|.|++-+|.|.+|
T Consensus        31 dfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA  110 (557)
T KOG3785|consen   31 DFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEA  110 (557)
T ss_pred             HHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHH
Confidence            345678999999999988877755  455666899999999999999999999998888899999999999999999999


Q ss_pred             HHHHHHH
Q 014256          161 IEDSEFA  167 (428)
Q Consensus       161 ~~~~~~a  167 (428)
                      .....++
T Consensus       111 ~~~~~ka  117 (557)
T KOG3785|consen  111 KSIAEKA  117 (557)
T ss_pred             HHHHhhC
Confidence            8865554

>PRK04841 transcriptional regulator MalT; Provisional

Probab=97.44  E-value=0.0018  Score=72.46  Aligned_cols=123  Identities=12%  Similarity=0.032  Sum_probs=98.9

Q ss_pred             cCCCCcchHHHHHhhhhcCCCCc---hHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-------HHHHHHHHHHHHH
Q 014256           50 SYSRNYDPVSHISSSLMNEESTP---DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-------AVAYANRAMAYLK  119 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~~~---~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-------~~~~~nla~~~~~  119 (428)
                      ..|++++|...+++++...+...   .+..+..+|.++...|++++|...+.+++.....       ..++.++|.+++.
T Consensus       464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~  543 (903)
T PRK04841        464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA  543 (903)
T ss_pred             hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence            78999999999999988544322   2334678899999999999999999999876321       3467889999999


Q ss_pred             hcCHHHHHHHHHHHHhcCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 014256          120 LRRFQEAEDDCTEALNLDDR--------YIKAYSRRATARKELGKLKESIEDSEFALRLEP  172 (428)
Q Consensus       120 ~~~~~eA~~~~~~al~l~p~--------~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P  172 (428)
                      .|++++|...+.+++.+...        ....+..+|.++...|++++|...+.+++.+..
T Consensus       544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~  604 (903)
T PRK04841        544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLS  604 (903)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhh
Confidence            99999999999999876321        233466789999999999999999999987643

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.42  E-value=0.00028  Score=66.42  Aligned_cols=134  Identities=9%  Similarity=-0.054  Sum_probs=106.8

Q ss_pred             hccChhhhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHc----------
Q 014256           34 VSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIA----------  102 (428)
Q Consensus        34 ~~~~~~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~----------  102 (428)
                      ..+....++..+|.|| ...++..|..+|++.-...|....-  ..-.+..+++.+.|.+|+........          
T Consensus        39 r~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qY--rlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lq  116 (459)
T KOG4340|consen   39 RSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQY--RLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQ  116 (459)
T ss_pred             cCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHH--HHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHH
Confidence            3455556778888888 8899999999999998888875443  34567777777877777765432221          


Q ss_pred             --------------------cCCc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q 014256          103 --------------------LSPT---AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKE  159 (428)
Q Consensus       103 --------------------~~p~---~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~e  159 (428)
                                          .-|.   +....|.|...++.|+|++|++-|..|++...-++-.-|+++.+++..|+|..
T Consensus       117 LqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyas  196 (459)
T KOG4340|consen  117 LQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYAS  196 (459)
T ss_pred             HHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHH
Confidence                                1232   56778899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHh
Q 014256          160 SIEDSEFALR  169 (428)
Q Consensus       160 A~~~~~~al~  169 (428)
                      |+.+....+.
T Consensus       197 ALk~iSEIie  206 (459)
T KOG4340|consen  197 ALKHISEIIE  206 (459)
T ss_pred             HHHHHHHHHH
Confidence            9988776654

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=97.42  E-value=0.00029  Score=71.55  Aligned_cols=108  Identities=20%  Similarity=0.195  Sum_probs=96.2

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHccCCc--HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 014256           77 EKELGNECFKQKKFKEAIDCYSRSIALSPT--AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKEL  154 (428)
Q Consensus        77 ~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~--~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~l  154 (428)
                      ++..|......|+...|+.|+..|+...|.  .+...++|.++++-+-.-.|-..+.+++.+....+-.++.+|.++..+
T Consensus       610 ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l  689 (886)
T KOG4507|consen  610 LNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLAL  689 (886)
T ss_pred             eecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHH
Confidence            444455555689999999999999999997  566899999999999999999999999999988899999999999999


Q ss_pred             CCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 014256          155 GKLKESIEDSEFALRLEPQNQEIKKQLAEV  184 (428)
Q Consensus       155 g~~~eA~~~~~~al~l~P~~~~~~~~l~~a  184 (428)
                      .+.+.|++.|+.++.++|++++..+.+..+
T Consensus       690 ~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i  719 (886)
T KOG4507|consen  690 KNISGALEAFRQALKLTTKCPECENSLKLI  719 (886)
T ss_pred             hhhHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence            999999999999999999999987766543

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.37  E-value=5.9e-05  Score=72.10  Aligned_cols=90  Identities=21%  Similarity=0.141  Sum_probs=82.0

Q ss_pred             cccCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHH
Q 014256           48 GNSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEA  126 (428)
Q Consensus        48 ~y~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA  126 (428)
                      +|..|+++.|++.|..++.++|.....  +..+|.++.+.++...|+..|..++.++|+ +.-|-.+|.++..+|+|++|
T Consensus       124 Aln~G~~~~ai~~~t~ai~lnp~~a~l--~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~a  201 (377)
T KOG1308|consen  124 ALNDGEFDTAIELFTSAIELNPPLAIL--YAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEA  201 (377)
T ss_pred             HhcCcchhhhhcccccccccCCchhhh--cccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHH
Confidence            356788999999999999999986655  669999999999999999999999999999 77888899999999999999


Q ss_pred             HHHHHHHHhcCCC
Q 014256          127 EDDCTEALNLDDR  139 (428)
Q Consensus       127 ~~~~~~al~l~p~  139 (428)
                      ..++..+++++-+
T Consensus       202 a~dl~~a~kld~d  214 (377)
T KOG1308|consen  202 AHDLALACKLDYD  214 (377)
T ss_pred             HHHHHHHHhcccc
Confidence            9999999988754

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=97.36  E-value=0.00093  Score=64.50  Aligned_cols=132  Identities=17%  Similarity=0.164  Sum_probs=106.7

Q ss_pred             hcCCCccc-cCCCCcchHHHHHhhhhcCCCCc----hHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc----------
Q 014256           42 KKPSPSGN-SYSRNYDPVSHISSSLMNEESTP----DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----------  106 (428)
Q Consensus        42 ~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~----~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~----------  106 (428)
                      ...+++++ .++.++++++.|+++++...++.    +...+..+|..|-...||++|+-+..++.++...          
T Consensus       125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky  204 (518)
T KOG1941|consen  125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY  204 (518)
T ss_pred             hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence            34466666 78889999999999998754433    2334678999999999999999999999886422          


Q ss_pred             -HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 014256          107 -AVAYANRAMAYLKLRRFQEAEDDCTEALNLD------DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQ  173 (428)
Q Consensus       107 -~~~~~nla~~~~~~~~~~eA~~~~~~al~l~------p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~  173 (428)
                       ....+.++.++..+|+.-.|.++|+++.++.      +.+.....-+|.+|...|+.+.|..-|+.+......
T Consensus       205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~  278 (518)
T KOG1941|consen  205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMAS  278 (518)
T ss_pred             HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhh
Confidence             3456778999999999999999999998774      345667778899999999999999999999877643

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.28  E-value=0.0027  Score=65.53  Aligned_cols=104  Identities=14%  Similarity=0.036  Sum_probs=83.1

Q ss_pred             CCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-----HHHHHHHHHHHHHhcCHHHH
Q 014256           52 SRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-----AVAYANRAMAYLKLRRFQEA  126 (428)
Q Consensus        52 g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-----~~~~~nla~~~~~~~~~~eA  126 (428)
                      ...+.|.+.+.......|+..-.  ++..|..+...|+.++|+++|++++.....     ...++.+|.|++.+++|++|
T Consensus       247 ~~~~~a~~lL~~~~~~yP~s~lf--l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A  324 (468)
T PF10300_consen  247 VPLEEAEELLEEMLKRYPNSALF--LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA  324 (468)
T ss_pred             CCHHHHHHHHHHHHHhCCCcHHH--HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence            34566888888888888875443  778999999999999999999999864433     45688999999999999999


Q ss_pred             HHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCH
Q 014256          127 EDDCTEALNLDD-RYIKAYSRRATARKELGKL  157 (428)
Q Consensus       127 ~~~~~~al~l~p-~~~~a~~~lg~~~~~lg~~  157 (428)
                      ...+.+..+.+. ...-..|..|.|+..+|+.
T Consensus       325 ~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~  356 (468)
T PF10300_consen  325 AEYFLRLLKESKWSKAFYAYLAAACLLMLGRE  356 (468)
T ss_pred             HHHHHHHHhccccHHHHHHHHHHHHHHhhccc
Confidence            999999988654 3344456678888888886

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.28  E-value=0.0075  Score=51.68  Aligned_cols=90  Identities=24%  Similarity=0.156  Sum_probs=67.7

Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHccCCc-----------------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 014256           80 LGNECFKQKKFKEAIDCYSRSIALSPT-----------------------AVAYANRAMAYLKLRRFQEAEDDCTEALNL  136 (428)
Q Consensus        80 lg~~~~~~g~~~~Ai~~y~~al~~~p~-----------------------~~~~~nla~~~~~~~~~~eA~~~~~~al~l  136 (428)
                      .|......|+...++..+.+++.+...                       ..+...++..+...|++++|+..|.+++.+
T Consensus        12 ~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~   91 (146)
T PF03704_consen   12 EARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALAL   91 (146)
T ss_dssp             HHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Confidence            355555666777777777777766321                       123344677888999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 014256          137 DDRYIKAYSRRATARKELGKLKESIEDSEFALR  169 (428)
Q Consensus       137 ~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~  169 (428)
                      +|.+-.+|..+-.++...|+..+|+..|+++.+
T Consensus        92 dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   92 DPYDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            999999999999999999999999999988754

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.25  E-value=0.0035  Score=57.25  Aligned_cols=140  Identities=16%  Similarity=0.087  Sum_probs=94.2

Q ss_pred             Chhhhh---cCCCccc-cCCCCcchHHHHHhhhhc----CCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc--
Q 014256           37 SLKSAK---KPSPSGN-SYSRNYDPVSHISSSLMN----EESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT--  106 (428)
Q Consensus        37 ~~~~a~---~~~~~~y-~~g~~~~Ai~~~~~al~~----~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~--  106 (428)
                      .+++|.   .+-++.| -.+++..|=..|.++-..    +..+..+..+...+++| +.++..+|+.|++++|++..+  
T Consensus        29 k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cy-kk~~~~eAv~cL~~aieIyt~~G  107 (288)
T KOG1586|consen   29 KYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCY-KKVDPEEAVNCLEKAIEIYTDMG  107 (288)
T ss_pred             chHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh-hccChHHHHHHHHHHHHHHHhhh
Confidence            444443   3334445 344555555555555332    22233344445555554 556999999999999998754  


Q ss_pred             -----HHHHHHHHHHHHHh-cCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 014256          107 -----AVAYANRAMAYLKL-RRFQEAEDDCTEALNLDDRY------IKAYSRRATARKELGKLKESIEDSEFALRLEPQN  174 (428)
Q Consensus       107 -----~~~~~nla~~~~~~-~~~~eA~~~~~~al~l~p~~------~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~  174 (428)
                           +..+..+|..|..- .+++.|+..|+++-......      -+++...+..-..+|+|.+|+..|+++.+-.-++
T Consensus       108 rf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n  187 (288)
T KOG1586|consen  108 RFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDN  187 (288)
T ss_pred             HHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence                 34566788888775 89999999999998765422      3456666777778999999999999999877776


Q ss_pred             HHH
Q 014256          175 QEI  177 (428)
Q Consensus       175 ~~~  177 (428)
                      .-.
T Consensus       188 ~LL  190 (288)
T KOG1586|consen  188 NLL  190 (288)
T ss_pred             hHH
Confidence            654

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=97.15  E-value=0.00049  Score=66.22  Aligned_cols=110  Identities=28%  Similarity=0.363  Sum_probs=96.0

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHccCC---c-----------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 014256           77 EKELGNECFKQKKFKEAIDCYSRSIALSP---T-----------------AVAYANRAMAYLKLRRFQEAEDDCTEALNL  136 (428)
Q Consensus        77 ~~~lg~~~~~~g~~~~Ai~~y~~al~~~p---~-----------------~~~~~nla~~~~~~~~~~eA~~~~~~al~l  136 (428)
                      .++.|+..++.++|..|..-|.+++..-.   .                 ...+.|.+.|-++.+.+..|+..+..+++.
T Consensus       225 ~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~  304 (372)
T KOG0546|consen  225 KKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRD  304 (372)
T ss_pred             hhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceecccccccc
Confidence            56788899999999999999998875321   0                 245678899999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 014256          137 DDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKS  186 (428)
Q Consensus       137 ~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~  186 (428)
                      +++..+++++++.++..+.++++|+++++.+....|++..+...+..+..
T Consensus       305 ~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~  354 (372)
T KOG0546|consen  305 ERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQ  354 (372)
T ss_pred             ChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhh
Confidence            99999999999999999999999999999999999999988766665544

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.06  E-value=0.0071  Score=58.05  Aligned_cols=116  Identities=14%  Similarity=0.030  Sum_probs=100.7

Q ss_pred             cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHcc-CCc-HH---HHHHHHHHHHHhcCHH
Q 014256           50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIAL-SPT-AV---AYANRAMAYLKLRRFQ  124 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~-~p~-~~---~~~nla~~~~~~~~~~  124 (428)
                      ..|+..+|....+++|...|.+.-+  ++.--.+++-.|+...-...+.+.+-. +++ +.   +.-.++.++...|-|+
T Consensus       115 ~~g~~h~a~~~wdklL~d~PtDlla--~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~  192 (491)
T KOG2610|consen  115 GRGKHHEAAIEWDKLLDDYPTDLLA--VKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD  192 (491)
T ss_pred             ccccccHHHHHHHHHHHhCchhhhh--hhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence            6789999999999999999987666  667777888899999999999999887 666 33   2345678899999999


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 014256          125 EAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFA  167 (428)
Q Consensus       125 eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a  167 (428)
                      +|++..++++++++.+.-+.+..+.++...|++.++.+...+.
T Consensus       193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t  235 (491)
T KOG2610|consen  193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKT  235 (491)
T ss_pred             hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence            9999999999999999999999999999999999999877653

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.03  E-value=0.006  Score=65.12  Aligned_cols=126  Identities=13%  Similarity=-0.014  Sum_probs=104.8

Q ss_pred             cccCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHH
Q 014256           48 GNSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEA  126 (428)
Q Consensus        48 ~y~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA  126 (428)
                      ....+++..|.....+.++..|+...+.+  ..|..+++.|++++|..|++..-...++ ....-.+-.||..++++++|
T Consensus        19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~v--LkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~   96 (932)
T KOG2053|consen   19 LLDSSQFKKALAKLGKLLKKHPNALYAKV--LKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA   96 (932)
T ss_pred             HhhhHHHHHHHHHHHHHHHHCCCcHHHHH--HHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence            34678899999999999999999888855  6788999999999999888777666666 66677788999999999999


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q 014256          127 EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE  176 (428)
Q Consensus       127 ~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~  176 (428)
                      ...|++++..+|+ -...+.+=.+|.+-+.|.+-.+.--+..+.-|+++-
T Consensus        97 ~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~y  145 (932)
T KOG2053|consen   97 VHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAY  145 (932)
T ss_pred             HHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccc
Confidence            9999999999999 777777888899988887666655555566676654

>PRK10941 hypothetical protein; Provisional

Probab=97.03  E-value=0.0072  Score=57.49  Aligned_cols=72  Identities=11%  Similarity=0.081  Sum_probs=67.3

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHH
Q 014256          107 AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK  178 (428)
Q Consensus       107 ~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~  178 (428)
                      .....|+=.+|...++++.|+.+.+..+.++|+++.-+--+|.+|.++|.+..|..+++..++..|+++.+.
T Consensus       181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~  252 (269)
T PRK10941        181 RKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISE  252 (269)
T ss_pred             HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHH
Confidence            345678889999999999999999999999999999999999999999999999999999999999998763

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.01  E-value=0.0011  Score=41.56  Aligned_cols=30  Identities=37%  Similarity=0.497  Sum_probs=13.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 014256          143 AYSRRATARKELGKLKESIEDSEFALRLEP  172 (428)
Q Consensus       143 a~~~lg~~~~~lg~~~eA~~~~~~al~l~P  172 (428)
                      +|+.+|.++..+|++++|...|+++++++|
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            344444444444444444444444444444

...

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.99  E-value=0.0014  Score=41.09  Aligned_cols=33  Identities=30%  Similarity=0.370  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 014256          108 VAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY  140 (428)
Q Consensus       108 ~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~  140 (428)
                      .+|+.+|.+|..+|++++|+..|+++++++|++
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            579999999999999999999999999999854

...

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=96.95  E-value=0.0062  Score=42.68  Aligned_cols=42  Identities=17%  Similarity=0.220  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 014256          142 KAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAE  183 (428)
Q Consensus       142 ~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~  183 (428)
                      ..+|.+|.++.++|+|++|..+.+.+|+++|+|.++......
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~   43 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKEL   43 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence            356788888899999999999999999999988887654433

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.95  E-value=0.012  Score=54.81  Aligned_cols=127  Identities=16%  Similarity=0.082  Sum_probs=93.1

Q ss_pred             cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCcHHHHHHHHHHHHHh----cCHHH
Q 014256           50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKL----RRFQE  125 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~~~~~~nla~~~~~~----~~~~e  125 (428)
                      ..|++++|.........+     ++.+  .-.+++.+..+++-|.....+..+++.+ .....+|.++.+.    +.+.+
T Consensus       120 ~~~~~deAl~~~~~~~~l-----E~~A--l~VqI~lk~~r~d~A~~~lk~mq~ided-~tLtQLA~awv~la~ggek~qd  191 (299)
T KOG3081|consen  120 HDGDFDEALKALHLGENL-----EAAA--LNVQILLKMHRFDLAEKELKKMQQIDED-ATLTQLAQAWVKLATGGEKIQD  191 (299)
T ss_pred             cCCChHHHHHHHhccchH-----HHHH--HHHHHHHHHHHHHHHHHHHHHHHccchH-HHHHHHHHHHHHHhccchhhhh
Confidence            678888888877774332     3433  4467788888888888888888887765 1222334333332    35888


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 014256          126 AEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEV  184 (428)
Q Consensus       126 A~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a  184 (428)
                      |.-.|+..-..-|..+......+.|+..+|+|++|...++.+|.-++++++...++--+
T Consensus       192 AfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~  250 (299)
T KOG3081|consen  192 AFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVL  250 (299)
T ss_pred             HHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence            88888888887777788888899999999999999999999999999998876554433

>PRK04841 transcriptional regulator MalT; Provisional

Probab=96.95  E-value=0.012  Score=65.92  Aligned_cols=145  Identities=14%  Similarity=0.005  Sum_probs=108.4

Q ss_pred             cCCCCcchHHHHHhhhhcCCC-------CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc------HHHHHHHHHH
Q 014256           50 SYSRNYDPVSHISSSLMNEES-------TPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT------AVAYANRAMA  116 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~-------~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~------~~~~~nla~~  116 (428)
                      ..|++++|...+..+....+.       .........+|.+++..|++++|..++.+++...+.      ..++..+|.+
T Consensus       421 ~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~  500 (903)
T PRK04841        421 SQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEV  500 (903)
T ss_pred             HCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence            678999999999887654221       113334556889999999999999999999985543      2456789999


Q ss_pred             HHHhcCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc-----H---H------
Q 014256          117 YLKLRRFQEAEDDCTEALNLDDRY------IKAYSRRATARKELGKLKESIEDSEFALRLEPQN-----Q---E------  176 (428)
Q Consensus       117 ~~~~~~~~eA~~~~~~al~l~p~~------~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~-----~---~------  176 (428)
                      +...|++++|...+.+++......      ..++.++|.++...|++++|...+.+++.+....     .   .      
T Consensus       501 ~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  580 (903)
T PRK04841        501 HHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRA  580 (903)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence            999999999999999998764321      3467788999999999999999999998863211     1   1      


Q ss_pred             ----HHHHHHHHHHHHHHHHHh
Q 014256          177 ----IKKQLAEVKSLYEKEVFQ  194 (428)
Q Consensus       177 ----~~~~l~~a~~~~~~a~~~  194 (428)
                          ..+++++|...+.+++..
T Consensus       581 ~~~~~~G~~~~A~~~~~~al~~  602 (903)
T PRK04841        581 QLLWEWARLDEAEQCARKGLEV  602 (903)
T ss_pred             HHHHHhcCHHHHHHHHHHhHHh
Confidence                035566777777666543

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=96.91  E-value=0.021  Score=54.94  Aligned_cols=99  Identities=10%  Similarity=-0.037  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHH-hcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 014256           77 EKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLK-LRRFQEAEDDCTEALNLDDRYIKAYSRRATARKEL  154 (428)
Q Consensus        77 ~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~-~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~l  154 (428)
                      |-.+.+...+.+..+.|...|.+|+...+. ..+|...|..-++ .++.+.|...|+.+++..|.+...|......+..+
T Consensus         4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~   83 (280)
T PF05843_consen    4 WIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKL   83 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence            445556666666677777777777644333 5566666666555 34555577777777777777777766666666677


Q ss_pred             CCHHHHHHHHHHHHhhCCCcH
Q 014256          155 GKLKESIEDSEFALRLEPQNQ  175 (428)
Q Consensus       155 g~~~eA~~~~~~al~l~P~~~  175 (428)
                      |+.+.|...|++++..-|...
T Consensus        84 ~d~~~aR~lfer~i~~l~~~~  104 (280)
T PF05843_consen   84 NDINNARALFERAISSLPKEK  104 (280)
T ss_dssp             T-HHHHHHHHHHHCCTSSCHH
T ss_pred             CcHHHHHHHHHHHHHhcCchh
Confidence            777777777777776665544

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=96.90  E-value=0.041  Score=45.05  Aligned_cols=91  Identities=24%  Similarity=0.319  Sum_probs=69.7

Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHccC---Cc----------HHHHHHHHHHHHHhcCHHHHHHHHHHHHh-------cCCC
Q 014256           80 LGNECFKQKKFKEAIDCYSRSIALS---PT----------AVAYANRAMAYLKLRRFQEAEDDCTEALN-------LDDR  139 (428)
Q Consensus        80 lg~~~~~~g~~~~Ai~~y~~al~~~---p~----------~~~~~nla~~~~~~~~~~eA~~~~~~al~-------l~p~  139 (428)
                      .|.-.+..|-|++|...|.+++...   |.          +.++..++.++..+|+|++++.....++.       ++.+
T Consensus        15 ~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qd   94 (144)
T PF12968_consen   15 DAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQD   94 (144)
T ss_dssp             HHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTST
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccc
Confidence            3455566789999999999999864   21          35678889999999999999998888884       3444


Q ss_pred             C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 014256          140 Y----IKAYSRRATARKELGKLKESIEDSEFALRL  170 (428)
Q Consensus       140 ~----~~a~~~lg~~~~~lg~~~eA~~~~~~al~l  170 (428)
                      .    +.+.+++|.++..+|+.++|+..|+.+-+.
T Consensus        95 eGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   95 EGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            3    456788999999999999999999887653

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.89  E-value=0.014  Score=54.35  Aligned_cols=122  Identities=17%  Similarity=0.178  Sum_probs=96.0

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHccCCc--HHHHHHHHHHHHHhcCHHHHHHHHHHH----HhcCC--CCHHHHHHHH
Q 014256           77 EKELGNECFKQKKFKEAIDCYSRSIALSPT--AVAYANRAMAYLKLRRFQEAEDDCTEA----LNLDD--RYIKAYSRRA  148 (428)
Q Consensus        77 ~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~--~~~~~nla~~~~~~~~~~eA~~~~~~a----l~l~p--~~~~a~~~lg  148 (428)
                      .+.+.+++...|+|.-.+..|.+.++.+|.  +.....+|.+.++.|+.+.|...|+..    -.++.  .+..+..+.+
T Consensus       180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a  259 (366)
T KOG2796|consen  180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA  259 (366)
T ss_pred             HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence            456778888899999999999999999966  888999999999999999999999944    33443  2345667778


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCcHHHH----------HHHHHHHHHHHHHHHhchhh
Q 014256          149 TARKELGKLKESIEDSEFALRLEPQNQEIK----------KQLAEVKSLYEKEVFQKASK  198 (428)
Q Consensus       149 ~~~~~lg~~~eA~~~~~~al~l~P~~~~~~----------~~l~~a~~~~~~a~~~~~~~  198 (428)
                      .++...++|.+|...|.+++..+|.++.+.          +.+..|++.+..++.+.|..
T Consensus       260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~  319 (366)
T KOG2796|consen  260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH  319 (366)
T ss_pred             hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence            888888999999999999999999998874          44445555555555444443

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.86  E-value=0.025  Score=53.69  Aligned_cols=137  Identities=15%  Similarity=0.073  Sum_probs=95.7

Q ss_pred             cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCcHHHHHHHH--HHHHHhcCHHHHH
Q 014256           50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRA--MAYLKLRRFQEAE  127 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~~~~~~nla--~~~~~~~~~~eA~  127 (428)
                      ..|++.+|...|..++...|.+..+  ...++.+|...|+++.|...+...-.-..........+  ..+.+.....+ .
T Consensus       146 ~~e~~~~a~~~~~~al~~~~~~~~~--~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~-~  222 (304)
T COG3118         146 EAEDFGEAAPLLKQALQAAPENSEA--KLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE-I  222 (304)
T ss_pred             hccchhhHHHHHHHHHHhCcccchH--HHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC-H
Confidence            6788888999999999988888777  55888899999998888777665322222211111112  22222222221 3


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--cHHHHHHHHHHHHHHH
Q 014256          128 DDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQ--NQEIKKQLAEVKSLYE  189 (428)
Q Consensus       128 ~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~--~~~~~~~l~~a~~~~~  189 (428)
                      ..+.+.+..||++..+-+.+|..+...|++++|.+.+-..++.+-+  +..++..+-+...++.
T Consensus       223 ~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g  286 (304)
T COG3118         223 QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG  286 (304)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence            4567777889999999999999999999999999999999988754  4556666665555443

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=96.83  E-value=0.021  Score=54.89  Aligned_cols=125  Identities=13%  Similarity=0.063  Sum_probs=100.2

Q ss_pred             cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHH-hcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHH
Q 014256           50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFK-QKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE  127 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~-~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~  127 (428)
                      +.+..+.|...|.+++...+.....  |...|..-+. .++.+.|...|+.+++..|. ..+|......+...++.+.|.
T Consensus        13 r~~g~~~aR~vF~~a~~~~~~~~~v--y~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR   90 (280)
T PF05843_consen   13 RTEGIEAARKVFKRARKDKRCTYHV--YVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNAR   90 (280)
T ss_dssp             HHHHHHHHHHHHHHHHCCCCS-THH--HHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHH
T ss_pred             HhCChHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHH
Confidence            4455788999999999665555555  6677888666 67777799999999999998 888988899999999999999


Q ss_pred             HHHHHHHhcCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q 014256          128 DDCTEALNLDDRYI---KAYSRRATARKELGKLKESIEDSEFALRLEPQNQE  176 (428)
Q Consensus       128 ~~~~~al~l~p~~~---~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~  176 (428)
                      ..|++++..-|...   ..|......-...|+.+.......++..+.|.+..
T Consensus        91 ~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~  142 (280)
T PF05843_consen   91 ALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS  142 (280)
T ss_dssp             HHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred             HHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence            99999999877655   57777888888889999999999999998888443

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.82  E-value=0.03  Score=49.98  Aligned_cols=119  Identities=13%  Similarity=0.044  Sum_probs=91.5

Q ss_pred             chHHHHHhhhhcCCCC-chHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc----HHHHHHHHHHHHHhcCHHHHHHHH
Q 014256           56 DPVSHISSSLMNEEST-PDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDC  130 (428)
Q Consensus        56 ~Ai~~~~~al~~~p~~-~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~nla~~~~~~~~~~eA~~~~  130 (428)
                      +.+....+....++.. .-+.....++..++..|++++|+..++.++..-.+    +.+-.++|.+.+.+|.+++|+..+
T Consensus        70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L  149 (207)
T COG2976          70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL  149 (207)
T ss_pred             hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            5556666666666443 33445678899999999999999999999876544    667788999999999999999887


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH
Q 014256          131 TEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQ  175 (428)
Q Consensus       131 ~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~  175 (428)
                      +..-.-+- .+.....+|.++...|+-.+|+..|++++..+++..
T Consensus       150 ~t~~~~~w-~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~  193 (207)
T COG2976         150 DTIKEESW-AAIVAELRGDILLAKGDKQEARAAYEKALESDASPA  193 (207)
T ss_pred             hccccccH-HHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence            75432111 133466789999999999999999999999985543

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=96.78  E-value=0.007  Score=59.23  Aligned_cols=115  Identities=17%  Similarity=0.143  Sum_probs=97.3

Q ss_pred             cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHH
Q 014256           50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  128 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~  128 (428)
                      ..|+.++|.+....+++..-+ ...    ..=.-..+-+++..=+...++.+...|+ +.++..+|..+++.+.|.+|..
T Consensus       275 ~l~~~~~A~~~i~~~Lk~~~D-~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~  349 (400)
T COG3071         275 RLGDHDEAQEIIEDALKRQWD-PRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASE  349 (400)
T ss_pred             HcCChHHHHHHHHHHHHhccC-hhH----HHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHH
Confidence            789999999999999987632 221    1222345678899999999999999998 9999999999999999999999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 014256          129 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRL  170 (428)
Q Consensus       129 ~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l  170 (428)
                      .++.|+...|+. ..+.-+|.++..+|+..+|.+.++.++.+
T Consensus       350 ~leaAl~~~~s~-~~~~~la~~~~~~g~~~~A~~~r~e~L~~  390 (400)
T COG3071         350 ALEAALKLRPSA-SDYAELADALDQLGEPEEAEQVRREALLL  390 (400)
T ss_pred             HHHHHHhcCCCh-hhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            999999998874 46777999999999999999999999854

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.76  E-value=0.0016  Score=65.10  Aligned_cols=105  Identities=14%  Similarity=0.129  Sum_probs=76.6

Q ss_pred             ccCCCCcchHHHHHhh-hhcCCC------CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHc---------cCCc------
Q 014256           49 NSYSRNYDPVSHISSS-LMNEES------TPDATSEKELGNECFKQKKFKEAIDCYSRSIA---------LSPT------  106 (428)
Q Consensus        49 y~~g~~~~Ai~~~~~a-l~~~p~------~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~---------~~p~------  106 (428)
                      |..|++..|.+.+... +...+.      ....+.|+++|.++++.|.|..++.+|.+++.         +.|.      
T Consensus       251 Y~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls  330 (696)
T KOG2471|consen  251 YAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLS  330 (696)
T ss_pred             HHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehh
Confidence            4678888888876654 222222      22344478899999999999999999988885         1111      


Q ss_pred             ----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 014256          107 ----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKE  153 (428)
Q Consensus       107 ----~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~  153 (428)
                          ..+.+|.|..|++.|+.-.|.++|.++......+|..|.|+|.|...
T Consensus       331 ~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim  381 (696)
T KOG2471|consen  331 QNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM  381 (696)
T ss_pred             cccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence                45678888888888888888888888888888888888888877653

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=96.76  E-value=0.018  Score=64.31  Aligned_cols=150  Identities=14%  Similarity=0.010  Sum_probs=119.9

Q ss_pred             hhcCCCccccCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHH
Q 014256           41 AKKPSPSGNSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLK  119 (428)
Q Consensus        41 a~~~~~~~y~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~  119 (428)
                      |+-.+-++|  |.-+...+.|+++-+.... ...  +..+.-+|.+.+++++|.++|+..++..-. ...|..+|..++.
T Consensus      1502 A~lNlEn~y--G~eesl~kVFeRAcqycd~-~~V--~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~ 1576 (1710)
T KOG1070|consen 1502 AYLNLENAY--GTEESLKKVFERACQYCDA-YTV--HLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLR 1576 (1710)
T ss_pred             HHHhHHHhh--CcHHHHHHHHHHHHHhcch-HHH--HHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhc
Confidence            444444443  3344556788888777631 223  667888999999999999999999988776 7889999999999


Q ss_pred             hcCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHH----------HHHHHH
Q 014256          120 LRRFQEAEDDCTEALNLDDR--YIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQL----------AEVKSL  187 (428)
Q Consensus       120 ~~~~~eA~~~~~~al~l~p~--~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l----------~~a~~~  187 (428)
                      +++-+.|...+.+|+..-|.  +.......|...+..|+.+.+...|+-.+.-+|.-.+.|.-|          ..+..+
T Consensus      1577 ~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~l 1656 (1710)
T KOG1070|consen 1577 QNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDL 1656 (1710)
T ss_pred             ccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHH
Confidence            99999999999999999998  888888999999999999999999999999999877775433          445667


Q ss_pred             HHHHHHhc
Q 014256          188 YEKEVFQK  195 (428)
Q Consensus       188 ~~~a~~~~  195 (428)
                      |++++.++
T Consensus      1657 feRvi~l~ 1664 (1710)
T KOG1070|consen 1657 FERVIELK 1664 (1710)
T ss_pred             HHHHHhcC
Confidence            77777655

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=96.75  E-value=0.016  Score=58.63  Aligned_cols=120  Identities=16%  Similarity=0.014  Sum_probs=79.7

Q ss_pred             CCccccCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccC-------C------------
Q 014256           45 SPSGNSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALS-------P------------  105 (428)
Q Consensus        45 ~~~~y~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~-------p------------  105 (428)
                      +..+.+..++..-++.-.++|+++|+...+..  .++.-.  ..-..+|..+|+++++..       .            
T Consensus       175 Mq~AWRERnp~aRIkaA~eALei~pdCAdAYI--LLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~  250 (539)
T PF04184_consen  175 MQKAWRERNPQARIKAAKEALEINPDCADAYI--LLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAW  250 (539)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHh--hccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhh
Confidence            33344566777777888888888887766633  333211  112344444444444321       0            


Q ss_pred             -----c--HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 014256          106 -----T--AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDR--YIKAYSRRATARKELGKLKESIEDSEFAL  168 (428)
Q Consensus       106 -----~--~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~--~~~a~~~lg~~~~~lg~~~eA~~~~~~al  168 (428)
                           +  ..+-..+|+|..++|+.++|++.+...++..|.  +..++.++-.++..++.|.++...+.+.-
T Consensus       251 ~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd  322 (539)
T PF04184_consen  251 HRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD  322 (539)
T ss_pred             hccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence                 0  223456789999999999999999999987764  56788999999999999988887777754

The molecular function of this protein is uncertain.

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=96.69  E-value=0.035  Score=55.72  Aligned_cols=141  Identities=12%  Similarity=0.077  Sum_probs=68.4

Q ss_pred             cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHH
Q 014256           50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  128 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~  128 (428)
                      .++++..|...|+++|..+-.+...  |...+.+-++......|...+.+|+.+-|. ..+|+.....-..+|+...|.+
T Consensus        85 sq~e~~RARSv~ERALdvd~r~itL--WlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRq  162 (677)
T KOG1915|consen   85 SQKEIQRARSVFERALDVDYRNITL--WLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQ  162 (677)
T ss_pred             hHHHHHHHHHHHHHHHhcccccchH--HHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHH
Confidence            3444445555555555554433333  444555555555555555555555555555 4455555545555555555555


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH---------HHHHHHHHHHHHHHHH
Q 014256          129 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI---------KKQLAEVKSLYEKEVF  193 (428)
Q Consensus       129 ~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~---------~~~l~~a~~~~~~a~~  193 (428)
                      .|++-+...|+. .+|...-..-.+-+..+.|...|++.+-..|+-...         .++...+...|..|++
T Consensus       163 iferW~~w~P~e-qaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie  235 (677)
T KOG1915|consen  163 IFERWMEWEPDE-QAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIE  235 (677)
T ss_pred             HHHHHHcCCCcH-HHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            555555555542 233333333334444455555555555555543322         2344445555555554

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=96.66  E-value=0.043  Score=55.54  Aligned_cols=119  Identities=12%  Similarity=0.054  Sum_probs=82.1

Q ss_pred             hhhccChhhhhcCCCccccCCCCcchHHHHHhhhhcCCC-----------------------CchHHHHHHHHHHHHHhc
Q 014256           32 NLVSSSLKSAKKPSPSGNSYSRNYDPVSHISSSLMNEES-----------------------TPDATSEKELGNECFKQK   88 (428)
Q Consensus        32 ~~~~~~~~~a~~~~~~~y~~g~~~~Ai~~~~~al~~~p~-----------------------~~~a~~~~~lg~~~~~~g   88 (428)
                      +...++...|+..++.-- ..-..+|..+|.++++....                       +........+|+|+.+.|
T Consensus       195 Lei~pdCAdAYILLAEEe-A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklG  273 (539)
T PF04184_consen  195 LEINPDCADAYILLAEEE-ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLG  273 (539)
T ss_pred             HHhhhhhhHHHhhccccc-ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhC
Confidence            334566666666555542 22345677777777654211                       111233567999999999


Q ss_pred             CHHHHHHHHHHHHccCCc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHH
Q 014256           89 KFKEAIDCYSRSIALSPT---AVAYANRAMAYLKLRRFQEAEDDCTEALNL-DDRYIKAYSRRATAR  151 (428)
Q Consensus        89 ~~~~Ai~~y~~al~~~p~---~~~~~nla~~~~~~~~~~eA~~~~~~al~l-~p~~~~a~~~lg~~~  151 (428)
                      +.++|++.|...++.+|.   ..++.|+..|++.++.|.++...+.+-=.+ -|+.+...|..+...
T Consensus       274 r~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLk  340 (539)
T PF04184_consen  274 RLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLK  340 (539)
T ss_pred             ChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHH
Confidence            999999999999988875   568999999999999999998888774322 245555556555543

The molecular function of this protein is uncertain.

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=96.52  E-value=0.11  Score=51.09  Aligned_cols=121  Identities=11%  Similarity=0.015  Sum_probs=93.1

Q ss_pred             ccCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc--HHHHHHHHHHHHHhcCHHHH
Q 014256           49 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT--AVAYANRAMAYLKLRRFQEA  126 (428)
Q Consensus        49 y~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~--~~~~~nla~~~~~~~~~~eA  126 (428)
                      +..|+|.+|.....+.-+..+..  ...+..-+...-+.|+++.|-.+..++-+..++  -..+..++...+..|+|..|
T Consensus        95 l~eG~~~qAEkl~~rnae~~e~p--~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA  172 (400)
T COG3071          95 LFEGDFQQAEKLLRRNAEHGEQP--VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAA  172 (400)
T ss_pred             HhcCcHHHHHHHHHHhhhcCcch--HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhH
Confidence            36688888888888865554432  233555666777788899998888888888444  55677788888888889999


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 014256          127 EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLE  171 (428)
Q Consensus       127 ~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~  171 (428)
                      ..-..+++...|.++.+......+|...|.|.+....+.+.-+-.
T Consensus       173 ~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~  217 (400)
T COG3071         173 RENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAG  217 (400)
T ss_pred             HHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHcc
Confidence            999999999999998888888888899998888887777666544

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.52  E-value=0.011  Score=62.44  Aligned_cols=113  Identities=29%  Similarity=0.458  Sum_probs=100.1

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-----HHHHHHHHHHHHHh--cCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 014256           76 SEKELGNECFKQKKFKEAIDCYSRSIALSPT-----AVAYANRAMAYLKL--RRFQEAEDDCTEALNLDDRYIKAYSRRA  148 (428)
Q Consensus        76 ~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-----~~~~~nla~~~~~~--~~~~eA~~~~~~al~l~p~~~~a~~~lg  148 (428)
                      .....|+.+++.++|..|.--|..++.+-|.     +....+.+.||+.+  ++|..++..|+-|+...|...+++..++
T Consensus        55 ~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~  134 (748)
T KOG4151|consen   55 ELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRA  134 (748)
T ss_pred             HHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhh
Confidence            3668899999999999998889999888874     55678888888876  5999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Q 014256          149 TARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLY  188 (428)
Q Consensus       149 ~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~  188 (428)
                      .+|..+++++-|++++.-....+|.+..+...+.+....|
T Consensus       135 ~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~ll  174 (748)
T KOG4151|consen  135 RKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGLL  174 (748)
T ss_pred             hHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHH
Confidence            9999999999999999999999999988877666666665

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.36  E-value=0.02  Score=57.49  Aligned_cols=114  Identities=12%  Similarity=0.009  Sum_probs=93.8

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHH-ccCCc---------HHHHHHHHHHHHHhcCHHHHHHHHHHHHh---------
Q 014256           75 TSEKELGNECFKQKKFKEAIDCYSRSI-ALSPT---------AVAYANRAMAYLKLRRFQEAEDDCTEALN---------  135 (428)
Q Consensus        75 ~~~~~lg~~~~~~g~~~~Ai~~y~~al-~~~p~---------~~~~~nla~~~~~~~~~~eA~~~~~~al~---------  135 (428)
                      .++....+.++-.|+|..|.+.+...- ...|.         -.+|+|+|.+++.++.|.-+...|.+|++         
T Consensus       241 ~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g  320 (696)
T KOG2471|consen  241 MALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNG  320 (696)
T ss_pred             HHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhcc
Confidence            347788999999999999999876642 22222         24579999999999999999999999995         


Q ss_pred             cCC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Q 014256          136 LDD---------RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLY  188 (428)
Q Consensus       136 l~p---------~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~  188 (428)
                      +.|         ......|+.|..|...|+.-.|.+.|.+++...-.++..|-++.++--+-
T Consensus       321 ~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima  382 (696)
T KOG2471|consen  321 LKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA  382 (696)
T ss_pred             CCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            111         23568999999999999999999999999999999999999888876543

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=96.35  E-value=0.042  Score=44.55  Aligned_cols=91  Identities=11%  Similarity=0.135  Sum_probs=59.0

Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHccCCc----HHHHHHHHHHHHHhcC-----------HHHHHHHHHHHHhcCCCCHHHH
Q 014256           80 LGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRR-----------FQEAEDDCTEALNLDDRYIKAY  144 (428)
Q Consensus        80 lg~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~nla~~~~~~~~-----------~~eA~~~~~~al~l~p~~~~a~  144 (428)
                      ++..++..|++-+|++..+..+....+    ...+...|.++..+..           .-.+++++.++..+.|..+..+
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L   81 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL   81 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence            355677777777777777777776655    2345555666655432           4456777777777777777777


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhh
Q 014256          145 SRRATARKELGKLKESIEDSEFALRL  170 (428)
Q Consensus       145 ~~lg~~~~~lg~~~eA~~~~~~al~l  170 (428)
                      +.+|.-+.....|++++.-.+++|.+
T Consensus        82 ~~la~~l~s~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   82 FELASQLGSVKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence            77776655555666666666666654

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.35  E-value=0.007  Score=37.32  Aligned_cols=31  Identities=29%  Similarity=0.299  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 014256          143 AYSRRATARKELGKLKESIEDSEFALRLEPQ  173 (428)
Q Consensus       143 a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~  173 (428)
                      +++++|.++..+|++++|+..|++++...|+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            4555666666666666666666666665554

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=96.33  E-value=0.0077  Score=58.36  Aligned_cols=144  Identities=16%  Similarity=0.226  Sum_probs=102.3

Q ss_pred             cCCCCcchHHHHHhhhhcCCCCc---hHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-------HHHHHHHHHHHHH
Q 014256           50 SYSRNYDPVSHISSSLMNEESTP---DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-------AVAYANRAMAYLK  119 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~~~---~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-------~~~~~nla~~~~~  119 (428)
                      +.-++.+++.+-.-.+......+   -.....-+|+++...+.|+++++.|+.++.+..+       -.++..+|..|-.
T Consensus        95 ~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~  174 (518)
T KOG1941|consen   95 KLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQ  174 (518)
T ss_pred             HHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHH
Confidence            34444555555444444321111   1233567899999999999999999999987432       4678899999999


Q ss_pred             hcCHHHHHHHHHHHHhcCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCcHHH----------
Q 014256          120 LRRFQEAEDDCTEALNLDDRY----------IKAYSRRATARKELGKLKESIEDSEFALRLE--PQNQEI----------  177 (428)
Q Consensus       120 ~~~~~eA~~~~~~al~l~p~~----------~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~--P~~~~~----------  177 (428)
                      +++|++|.-...+|..+-...          .-++|.++.++..+|..-.|.+..+++.++.  -.|...          
T Consensus       175 l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aD  254 (518)
T KOG1941|consen  175 LKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFAD  254 (518)
T ss_pred             HHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence            999999999988888764322          3468889999999999999999999987764  222221          


Q ss_pred             ----HHHHHHHHHHHHHHHH
Q 014256          178 ----KKQLAEVKSLYEKEVF  193 (428)
Q Consensus       178 ----~~~l~~a~~~~~~a~~  193 (428)
                          +++++.+...|++++.
T Consensus       255 IyR~~gd~e~af~rYe~Am~  274 (518)
T KOG1941|consen  255 IYRSRGDLERAFRRYEQAMG  274 (518)
T ss_pred             HHHhcccHhHHHHHHHHHHH
Confidence                4556667677766653

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.29  E-value=0.0064  Score=38.87  Aligned_cols=26  Identities=27%  Similarity=0.500  Sum_probs=14.7

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHc
Q 014256           77 EKELGNECFKQKKFKEAIDCYSRSIA  102 (428)
Q Consensus        77 ~~~lg~~~~~~g~~~~Ai~~y~~al~  102 (428)
                      +..+|.+|...|+|++|+++|++++.
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~   27 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQALA   27 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            44566666666666666666666443

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=96.26  E-value=0.024  Score=55.93  Aligned_cols=91  Identities=20%  Similarity=0.364  Sum_probs=74.8

Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHccCC-----------c--------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 014256           79 ELGNECFKQKKFKEAIDCYSRSIALSP-----------T--------AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDR  139 (428)
Q Consensus        79 ~lg~~~~~~g~~~~Ai~~y~~al~~~p-----------~--------~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~  139 (428)
                      .-|..++++++|..|+.-|.-++++..           .        ...-..+..||+++++.+.|+...-+.|.++|.
T Consensus       181 ~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~  260 (569)
T PF15015_consen  181 KDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPS  260 (569)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcc
Confidence            456677888888888888877777521           1        123456899999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 014256          140 YIKAYSRRATARKELGKLKESIEDSEFALR  169 (428)
Q Consensus       140 ~~~a~~~lg~~~~~lg~~~eA~~~~~~al~  169 (428)
                      +..-+.+.|.|...+.+|.+|...+..+.-
T Consensus       261 ~frnHLrqAavfR~LeRy~eAarSamia~y  290 (569)
T PF15015_consen  261 YFRNHLRQAAVFRRLERYSEAARSAMIADY  290 (569)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999877666543

>smart00028 TPR Tetratricopeptide repeats

Probab=96.26  E-value=0.0076  Score=35.85  Aligned_cols=29  Identities=41%  Similarity=0.493  Sum_probs=13.8

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 014256          110 YANRAMAYLKLRRFQEAEDDCTEALNLDD  138 (428)
Q Consensus       110 ~~nla~~~~~~~~~~eA~~~~~~al~l~p  138 (428)
                      |.++|.++..+++++.|+..+.+++.++|
T Consensus         4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~   32 (34)
T smart00028        4 LYNLGNAYLKLGDYDEALEYYEKALELDP   32 (34)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence            44444444444444444444444444444

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PRK10941 hypothetical protein; Provisional

Probab=96.21  E-value=0.045  Score=52.12  Aligned_cols=75  Identities=15%  Similarity=0.102  Sum_probs=67.4

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 014256           76 SEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATA  150 (428)
Q Consensus        76 ~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~  150 (428)
                      .+.++-.+|.+.++|+.|+.+.+..+.++|+ +.-+.-||.+|.++|.+..|..+++..++.-|+++.+-.-...+
T Consensus       183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql  258 (269)
T PRK10941        183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI  258 (269)
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence            4677888999999999999999999999999 77789999999999999999999999999999998876554443

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=96.19  E-value=0.028  Score=39.38  Aligned_cols=42  Identities=19%  Similarity=0.247  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 014256          109 AYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATA  150 (428)
Q Consensus       109 ~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~  150 (428)
                      ..+.+|..++++|+|+.|...++.+++++|+|..+......+
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i   44 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI   44 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence            467788888999999999999999999999988776554443

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.17  E-value=0.033  Score=47.62  Aligned_cols=58  Identities=22%  Similarity=0.202  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 014256           77 EKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEAL  134 (428)
Q Consensus        77 ~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al  134 (428)
                      +..++..+...|++++|+..+.+++..+|. ..+|..+-.+|..+|++.+|+..|.++.
T Consensus        65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~  123 (146)
T PF03704_consen   65 LERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR  123 (146)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence            567888899999999999999999999998 8899999999999999999999988874

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=96.12  E-value=0.021  Score=54.24  Aligned_cols=66  Identities=20%  Similarity=0.085  Sum_probs=37.8

Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH
Q 014256          112 NRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI  177 (428)
Q Consensus       112 nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~  177 (428)
                      +.|.-..+.|+.+.|...|+.|+.++|+++.++..+|......++.-+|-++|-++|.++|.+.++
T Consensus       121 ~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseA  186 (472)
T KOG3824|consen  121 KAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEA  186 (472)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHH
Confidence            334444455555566666666666666666665555655555555555555566666666655555

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.11  E-value=0.011  Score=36.48  Aligned_cols=31  Identities=23%  Similarity=0.200  Sum_probs=16.5

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 014256          109 AYANRAMAYLKLRRFQEAEDDCTEALNLDDR  139 (428)
Q Consensus       109 ~~~nla~~~~~~~~~~eA~~~~~~al~l~p~  139 (428)
                      +++++|.|+..+|++++|+..+++++...|+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            3445555555555555555555555555544

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=96.00  E-value=0.16  Score=42.69  Aligned_cols=76  Identities=18%  Similarity=0.128  Sum_probs=60.9

Q ss_pred             CCcHHHHHHHHHHHHHhc---CHHHHHHHHHHHHh-cCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHH
Q 014256          104 SPTAVAYANRAMAYLKLR---RFQEAEDDCTEALN-LDDR-YIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK  178 (428)
Q Consensus       104 ~p~~~~~~nla~~~~~~~---~~~eA~~~~~~al~-l~p~-~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~  178 (428)
                      ++.....+|+|.++.+..   +..+.+..++..++ -+|. .-...|.++..++++|+|+.++.+....++.+|+|.++.
T Consensus        29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~  108 (149)
T KOG3364|consen   29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL  108 (149)
T ss_pred             cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence            445667788888888765   46677888888886 4443 356788899999999999999999999999999999875


Q ss_pred             H
Q 014256          179 K  179 (428)
Q Consensus       179 ~  179 (428)
                      .
T Consensus       109 ~  109 (149)
T KOG3364|consen  109 E  109 (149)
T ss_pred             H
Confidence            3

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=95.98  E-value=0.073  Score=57.15  Aligned_cols=90  Identities=20%  Similarity=0.198  Sum_probs=81.7

Q ss_pred             HHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 014256           84 CFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIE  162 (428)
Q Consensus        84 ~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~  162 (428)
                      ....++|.+|+....+.+...|+ ..+...-|..+.++|++++|..+++..-...+++-..+.-+-.+|..+|++++|+.
T Consensus        19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~   98 (932)
T KOG2053|consen   19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH   98 (932)
T ss_pred             HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence            34568899999999999999999 67777889999999999999977777777778888889999999999999999999


Q ss_pred             HHHHHHhhCCC
Q 014256          163 DSEFALRLEPQ  173 (428)
Q Consensus       163 ~~~~al~l~P~  173 (428)
                      .|++++..+|+
T Consensus        99 ~Ye~~~~~~P~  109 (932)
T KOG2053|consen   99 LYERANQKYPS  109 (932)
T ss_pred             HHHHHHhhCCc
Confidence            99999999999

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=95.95  E-value=0.037  Score=56.82  Aligned_cols=101  Identities=15%  Similarity=0.171  Sum_probs=88.1

Q ss_pred             cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHH
Q 014256           50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  128 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~  128 (428)
                      ..|+.-.|+.++..++...|....+ .+.++++++.+.|-.-+|-..+.+++.+.-. +..++-+|.+|+.+.+.+.|++
T Consensus       619 ~~gn~~~a~~cl~~a~~~~p~~~~v-~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~  697 (886)
T KOG4507|consen  619 AVGNSTFAIACLQRALNLAPLQQDV-PLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALE  697 (886)
T ss_pred             ecCCcHHHHHHHHHHhccChhhhcc-cHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHH
Confidence            7899999999999999998864432 3569999999999999999999999999865 8889999999999999999999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHH
Q 014256          129 DCTEALNLDDRYIKAYSRRATAR  151 (428)
Q Consensus       129 ~~~~al~l~p~~~~a~~~lg~~~  151 (428)
                      .+.+|+.++|+++..-..+-.+.
T Consensus       698 ~~~~a~~~~~~~~~~~~~l~~i~  720 (886)
T KOG4507|consen  698 AFRQALKLTTKCPECENSLKLIR  720 (886)
T ss_pred             HHHHHHhcCCCChhhHHHHHHHH
Confidence            99999999999987765554443

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=95.91  E-value=0.031  Score=53.18  Aligned_cols=78  Identities=19%  Similarity=0.210  Sum_probs=69.5

Q ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 014256           73 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATA  150 (428)
Q Consensus        73 ~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~  150 (428)
                      ++......+.-..+.|+.++|...|..++.++|. +.+....|......++.-+|-.+|.+|+.++|.+.+++.+++..
T Consensus       115 EA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT  193 (472)
T KOG3824|consen  115 EAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART  193 (472)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence            4444556677788899999999999999999999 99999999999999999999999999999999999999988753

>smart00028 TPR Tetratricopeptide repeats

Probab=95.86  E-value=0.013  Score=34.70  Aligned_cols=33  Identities=36%  Similarity=0.449  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 014256          142 KAYSRRATARKELGKLKESIEDSEFALRLEPQN  174 (428)
Q Consensus       142 ~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~  174 (428)
                      .+++++|.++..+|++++|...|.+++++.|++
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~   34 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN   34 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence            478899999999999999999999999998863

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=95.70  E-value=0.021  Score=36.38  Aligned_cols=24  Identities=17%  Similarity=0.205  Sum_probs=11.2

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHH
Q 014256          110 YANRAMAYLKLRRFQEAEDDCTEA  133 (428)
Q Consensus       110 ~~nla~~~~~~~~~~eA~~~~~~a  133 (428)
                      |.++|.+|..+|+|++|+..|+++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~a   25 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQA   25 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHH
Confidence            344445555555555555555443

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=95.70  E-value=0.16  Score=45.33  Aligned_cols=97  Identities=16%  Similarity=0.091  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC--CHH----HH
Q 014256           75 TSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDR--YIK----AY  144 (428)
Q Consensus        75 ~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~--~~~----a~  144 (428)
                      ..+..+|..|.+.|+++.|+++|.++......    ...+.++-.+.+..++|..+.....++-.+-..  +..    ..
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk  116 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK  116 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence            44789999999999999999999999887644    567888888999999999999998888766432  222    23


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 014256          145 SRRATARKELGKLKESIEDSEFALRLE  171 (428)
Q Consensus       145 ~~lg~~~~~lg~~~eA~~~~~~al~l~  171 (428)
                      ..-|..+...|+|.+|...|-.++.-.
T Consensus       117 ~~~gL~~l~~r~f~~AA~~fl~~~~t~  143 (177)
T PF10602_consen  117 VYEGLANLAQRDFKEAAELFLDSLSTF  143 (177)
T ss_pred             HHHHHHHHHhchHHHHHHHHHccCcCC
Confidence            344777888899999998887765443

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.66  E-value=0.12  Score=53.78  Aligned_cols=95  Identities=19%  Similarity=0.105  Sum_probs=82.4

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHccCCc-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 014256           77 EKELGNECFKQKKFKEAIDCYSRSIALSPT-------AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRAT  149 (428)
Q Consensus        77 ~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-------~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~  149 (428)
                      +++-|..+|+..+|..+++.|...+...|.       +....+++.||+++.+.+.|.+.+.+|=+.||.++-..+..-.
T Consensus       357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~  436 (872)
T KOG4814|consen  357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQ  436 (872)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence            566778889999999999999999987664       5567889999999999999999999999999999988888888


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhC
Q 014256          150 ARKELGKLKESIEDSEFALRLE  171 (428)
Q Consensus       150 ~~~~lg~~~eA~~~~~~al~l~  171 (428)
                      +...-|+-++|+....+.....
T Consensus       437 ~~~~E~~Se~AL~~~~~~~s~~  458 (872)
T KOG4814|consen  437 SFLAEDKSEEALTCLQKIKSSE  458 (872)
T ss_pred             HHHHhcchHHHHHHHHHHHhhh
Confidence            8888899999988887776544

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=95.64  E-value=0.12  Score=58.12  Aligned_cols=124  Identities=12%  Similarity=-0.074  Sum_probs=69.3

Q ss_pred             cCCCCcchHHHHHhhhhcC-CCC--chHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCcHHHHHHHHHHHHHhcCHHHH
Q 014256           50 SYSRNYDPVSHISSSLMNE-EST--PDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEA  126 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~-p~~--~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~~~~~~nla~~~~~~~~~~eA  126 (428)
                      ..++.++|.+.++++|..- ++.  .....|..+-|....-|.-+.-.+.|++|.+.......|..+..+|.+-+.+++|
T Consensus      1470 elsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~~iy~k~ek~~~A 1549 (1710)
T KOG1070|consen 1470 ELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLLGIYEKSEKNDEA 1549 (1710)
T ss_pred             hhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcchhH
Confidence            4555566666666655432 111  1111122222222222334444455555555443345555666666666667777


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 014256          127 EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQ  173 (428)
Q Consensus       127 ~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~  173 (428)
                      .+.++..++......+.|..+|..+.+..+-++|...+.+||.--|.
T Consensus      1550 ~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk 1596 (1710)
T KOG1070|consen 1550 DELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPK 1596 (1710)
T ss_pred             HHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch
Confidence            77777766666666666777777777777767777777777776666

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=95.64  E-value=0.46  Score=49.67  Aligned_cols=145  Identities=14%  Similarity=0.159  Sum_probs=96.2

Q ss_pred             cCCCCcchHHHHHhhhhc-CCCCc---hHHHHHHHHHHHHHhcCHHHHHHHHHHHHccC-Cc----HHHHHHHHHHHHHh
Q 014256           50 SYSRNYDPVSHISSSLMN-EESTP---DATSEKELGNECFKQKKFKEAIDCYSRSIALS-PT----AVAYANRAMAYLKL  120 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~-~p~~~---~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~-p~----~~~~~nla~~~~~~  120 (428)
                      ..|++.+-+..|.+++.. +|...   -...|..+|..|...|+.+.|...|+++.... +.    +..|.+.|..-+..
T Consensus       359 ~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh  438 (835)
T KOG2047|consen  359 YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRH  438 (835)
T ss_pred             hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhh
Confidence            346666777777777553 55432   12347788888888888888888888888775 32    66788888888888


Q ss_pred             cCHHHHHHHHHHHHhcCCC------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH-----
Q 014256          121 RRFQEAEDDCTEALNLDDR------------------YIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI-----  177 (428)
Q Consensus       121 ~~~~eA~~~~~~al~l~p~------------------~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~-----  177 (428)
                      .+++.|.....+|...-..                  ..+.|...+......|-++.....|.+++.|.=-.+++     
T Consensus       439 ~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyA  518 (835)
T KOG2047|consen  439 ENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYA  518 (835)
T ss_pred             hhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            8888888888887754211                  13456666666777777777777777777766444443     


Q ss_pred             -----HHHHHHHHHHHHHHHHh
Q 014256          178 -----KKQLAEVKSLYEKEVFQ  194 (428)
Q Consensus       178 -----~~~l~~a~~~~~~a~~~  194 (428)
                           ...+.++.+.|+++|.+
T Consensus       519 mfLEeh~yfeesFk~YErgI~L  540 (835)
T KOG2047|consen  519 MFLEEHKYFEESFKAYERGISL  540 (835)
T ss_pred             HHHHhhHHHHHHHHHHHcCCcc
Confidence                 23344555555555443

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=95.59  E-value=0.38  Score=44.99  Aligned_cols=153  Identities=8%  Similarity=0.029  Sum_probs=118.7

Q ss_pred             cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHh-cCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHH-HH
Q 014256           50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQ-KKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQ-EA  126 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~-g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~-eA  126 (428)
                      +...-..|...-..++..+|.+..+  |.-+-+++... .+..+-++++.+.++-+|. ..+|..|-.+....|++. .-
T Consensus        55 ~~E~S~RAl~LT~d~i~lNpAnYTV--W~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rE  132 (318)
T KOG0530|consen   55 KNEKSPRALQLTEDAIRLNPANYTV--WQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRE  132 (318)
T ss_pred             ccccCHHHHHHHHHHHHhCcccchH--HHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccch
Confidence            4445677899999999999998887  43444444443 4567778899999999988 888888888888888888 78


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH----------------HHHHHHHHHHHHH
Q 014256          127 EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI----------------KKQLAEVKSLYEK  190 (428)
Q Consensus       127 ~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~----------------~~~l~~a~~~~~~  190 (428)
                      ++.++.++..|.++.-+|..+-.+....+.|+.-+.+....+..+--|-.+                ...++.-..+..+
T Consensus       133 Lef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~  212 (318)
T KOG0530|consen  133 LEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKD  212 (318)
T ss_pred             HHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHH
Confidence            889999999999999999999999999999999999999999887654444                2445555566667


Q ss_pred             HHHhchhhhHhhhc
Q 014256          191 EVFQKASKTLEKYG  204 (428)
Q Consensus       191 a~~~~~~~~~~~~~  204 (428)
                      .|...|.+...+..
T Consensus       213 ~I~~vP~NeSaWnY  226 (318)
T KOG0530|consen  213 KILLVPNNESAWNY  226 (318)
T ss_pred             HHHhCCCCccHHHH
Confidence            77777776655443

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=95.57  E-value=0.15  Score=53.16  Aligned_cols=160  Identities=13%  Similarity=0.022  Sum_probs=125.6

Q ss_pred             ChhhhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCc--hHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-------
Q 014256           37 SLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTP--DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-------  106 (428)
Q Consensus        37 ~~~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~--~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-------  106 (428)
                      ........++..| ..|+.+.|...|+++...+=...  .+..|.+.|..-.+..+++.|+.+.++|..+-..       
T Consensus       385 s~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd  464 (835)
T KOG2047|consen  385 SPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYD  464 (835)
T ss_pred             ChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhc
Confidence            3334445555667 88999999999999988753321  2455788888888899999999999998764111       


Q ss_pred             ------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--
Q 014256          107 ------------AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEP--  172 (428)
Q Consensus       107 ------------~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P--  172 (428)
                                  ...|..++......|-++.....|++.+.+.--.|....|.|..+....-+++|.+.|++.+.|.+  
T Consensus       465 ~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p  544 (835)
T KOG2047|consen  465 NSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWP  544 (835)
T ss_pred             CCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCc
Confidence                        246777788888888999999999999999988899999999999999999999999999999874  


Q ss_pred             CcHHHH-------------HHHHHHHHHHHHHHHhch
Q 014256          173 QNQEIK-------------KQLAEVKSLYEKEVFQKA  196 (428)
Q Consensus       173 ~~~~~~-------------~~l~~a~~~~~~a~~~~~  196 (428)
                      +-.+++             ..++.|..+|+++++.=|
T Consensus       545 ~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cp  581 (835)
T KOG2047|consen  545 NVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCP  581 (835)
T ss_pred             cHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Confidence            334442             246788889999988655

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=95.50  E-value=0.08  Score=42.94  Aligned_cols=89  Identities=16%  Similarity=0.278  Sum_probs=73.2

Q ss_pred             ccCCCCcchHHHHHhhhhcCCCCchH-HHHHHHHHHHHHhcC-----------HHHHHHHHHHHHccCCc-HHHHHHHHH
Q 014256           49 NSYSRNYDPVSHISSSLMNEESTPDA-TSEKELGNECFKQKK-----------FKEAIDCYSRSIALSPT-AVAYANRAM  115 (428)
Q Consensus        49 y~~g~~~~Ai~~~~~al~~~p~~~~a-~~~~~lg~~~~~~g~-----------~~~Ai~~y~~al~~~p~-~~~~~nla~  115 (428)
                      +..|++-+|++..+..+...++...+ ..+...|.++++...           .-.|++||.++..+.|. +..++.+|.
T Consensus         7 ~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~~la~   86 (111)
T PF04781_consen    7 FARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLFELAS   86 (111)
T ss_pred             HHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHHHHHH
Confidence            36789999999999999888776543 446677888877543           45799999999999999 888999998


Q ss_pred             HHHHhcCHHHHHHHHHHHHhcC
Q 014256          116 AYLKLRRFQEAEDDCTEALNLD  137 (428)
Q Consensus       116 ~~~~~~~~~eA~~~~~~al~l~  137 (428)
                      -+-...-|++++.-|++++.+.
T Consensus        87 ~l~s~~~Ykk~v~kak~~Lsv~  108 (111)
T PF04781_consen   87 QLGSVKYYKKAVKKAKRGLSVT  108 (111)
T ss_pred             HhhhHHHHHHHHHHHHHHhccc
Confidence            8877888999999999998764

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=95.50  E-value=0.4  Score=49.59  Aligned_cols=122  Identities=12%  Similarity=-0.009  Sum_probs=93.7

Q ss_pred             CCCCcchHHHHHhhhhcCCCCchHHH-----HHHHHHHHH-----HhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHH
Q 014256           51 YSRNYDPVSHISSSLMNEESTPDATS-----EKELGNECF-----KQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLK  119 (428)
Q Consensus        51 ~g~~~~Ai~~~~~al~~~p~~~~a~~-----~~~lg~~~~-----~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~  119 (428)
                      .||-+.++..+.++.+.. +.....+     .+..+...+     ...+.+.|.+++.......|+ ....+..|..+..
T Consensus       201 ~gdR~~GL~~L~~~~~~~-~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~  279 (468)
T PF10300_consen  201 SGDRELGLRLLWEASKSE-NIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERL  279 (468)
T ss_pred             CCcHHHHHHHHHHHhccC-CcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            488889999999987733 3322211     111221111     245678899999999999999 7778999999999


Q ss_pred             hcCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 014256          120 LRRFQEAEDDCTEALNLDDRY----IKAYSRRATARKELGKLKESIEDSEFALRLEPQ  173 (428)
Q Consensus       120 ~~~~~eA~~~~~~al~l~p~~----~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~  173 (428)
                      .|+.++|++.+++++......    .-.++.+|.++..+++|++|..+|...++.+.-
T Consensus       280 ~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W  337 (468)
T PF10300_consen  280 KGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW  337 (468)
T ss_pred             hcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc
Confidence            999999999999998644432    346889999999999999999999999987654

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=95.48  E-value=0.23  Score=45.72  Aligned_cols=89  Identities=18%  Similarity=0.192  Sum_probs=63.9

Q ss_pred             hcCHHHHHHHHHHHHcc------CCc--HHHHHHHHHHHHHhcC-------HHHHHHHHHHHHhcCC------CCHHHHH
Q 014256           87 QKKFKEAIDCYSRSIAL------SPT--AVAYANRAMAYLKLRR-------FQEAEDDCTEALNLDD------RYIKAYS  145 (428)
Q Consensus        87 ~g~~~~Ai~~y~~al~~------~p~--~~~~~nla~~~~~~~~-------~~eA~~~~~~al~l~p------~~~~a~~  145 (428)
                      ...+++|++.|.-|+-.      .+.  +.++..+|.+|..+|+       +..|...|.+++....      +.....+
T Consensus        90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y  169 (214)
T PF09986_consen   90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY  169 (214)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence            45677777777666542      222  6677888888888888       4556666666665442      2257888


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCcH
Q 014256          146 RRATARKELGKLKESIEDSEFALRLEPQNQ  175 (428)
Q Consensus       146 ~lg~~~~~lg~~~eA~~~~~~al~l~P~~~  175 (428)
                      .+|.+..++|++++|..+|.+++...-...
T Consensus       170 LigeL~rrlg~~~eA~~~fs~vi~~~~~s~  199 (214)
T PF09986_consen  170 LIGELNRRLGNYDEAKRWFSRVIGSKKASK  199 (214)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence            999999999999999999999997654333

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=95.47  E-value=0.022  Score=52.03  Aligned_cols=57  Identities=21%  Similarity=0.262  Sum_probs=34.9

Q ss_pred             HHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 014256           84 CFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY  140 (428)
Q Consensus        84 ~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~  140 (428)
                      ..+.++.+.|.+.|.+++++.|. ...|+.+|....+.|+++.|...|++.+++||.+
T Consensus         5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D   62 (287)
T COG4976           5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED   62 (287)
T ss_pred             hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence            34455666666666666666665 5556666666666666666666666666666654

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=95.34  E-value=0.32  Score=49.39  Aligned_cols=95  Identities=12%  Similarity=0.060  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHh
Q 014256           92 EAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGK-LKESIEDSEFALR  169 (428)
Q Consensus        92 ~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~-~~eA~~~~~~al~  169 (428)
                      .-...|+++....+. ..+|.+......+.+.+.+--..|.+++..+|+++..|..-|...+..+. .+.|.+.|.++|+
T Consensus        89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR  168 (568)
T KOG2396|consen   89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLR  168 (568)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhh
Confidence            445679999988885 88888888777777779999999999999999999999999988887776 9999999999999


Q ss_pred             hCCCcHHHHHHHHHHHH
Q 014256          170 LEPQNQEIKKQLAEVKS  186 (428)
Q Consensus       170 l~P~~~~~~~~l~~a~~  186 (428)
                      .+|+.+.++..+-...-
T Consensus       169 ~npdsp~Lw~eyfrmEL  185 (568)
T KOG2396|consen  169 FNPDSPKLWKEYFRMEL  185 (568)
T ss_pred             cCCCChHHHHHHHHHHH
Confidence            99999998766555443

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.28  E-value=0.075  Score=47.47  Aligned_cols=92  Identities=18%  Similarity=0.091  Sum_probs=72.4

Q ss_pred             cCCCCcchHHHHHhhhhcCC-CCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCcHHHHHHHHHHHHHhcCHHHHHH
Q 014256           50 SYSRNYDPVSHISSSLMNEE-STPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAED  128 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p-~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~~~~~~nla~~~~~~~~~~eA~~  128 (428)
                      ..|++++|+..++.++.... .+..+..-..+|.+.+.+|++++|+..+...-..+-.+...-.+|.+++..|+-++|..
T Consensus       101 e~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~  180 (207)
T COG2976         101 EANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARA  180 (207)
T ss_pred             hhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHH
Confidence            78999999999999986532 23344446689999999999999999876543322125556779999999999999999


Q ss_pred             HHHHHHhcCCCCH
Q 014256          129 DCTEALNLDDRYI  141 (428)
Q Consensus       129 ~~~~al~l~p~~~  141 (428)
                      .|++++..+++.+
T Consensus       181 ay~kAl~~~~s~~  193 (207)
T COG2976         181 AYEKALESDASPA  193 (207)
T ss_pred             HHHHHHHccCChH
Confidence            9999999986553

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=95.16  E-value=0.55  Score=46.36  Aligned_cols=123  Identities=20%  Similarity=0.126  Sum_probs=93.9

Q ss_pred             cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHcc---CCc------HHHHHHHHHHHHHh
Q 014256           50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIAL---SPT------AVAYANRAMAYLKL  120 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~---~p~------~~~~~nla~~~~~~  120 (428)
                      ..|+.+-|+.+-.++-...|...-+  +...=......|+|+.|+...+.....   .++      +.+....++..+..
T Consensus       166 r~GareaAr~yAe~Aa~~Ap~l~WA--~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~lda  243 (531)
T COG3898         166 RLGAREAARHYAERAAEKAPQLPWA--ARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDA  243 (531)
T ss_pred             hcccHHHHHHHHHHHHhhccCCchH--HHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcC
Confidence            6788888888888888887776544  334445566788999999887766543   233      34455555555444


Q ss_pred             cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH
Q 014256          121 RRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQ  175 (428)
Q Consensus       121 ~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~  175 (428)
                       +...|..+..+++++.|+.+.+-.--+.+++..|+..++-..++.+.+.+|+-.
T Consensus       244 -dp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~  297 (531)
T COG3898         244 -DPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD  297 (531)
T ss_pred             -ChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH
Confidence             478888999999999999999999999999999999999999999999999643

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=95.10  E-value=0.39  Score=47.13  Aligned_cols=111  Identities=18%  Similarity=0.039  Sum_probs=70.6

Q ss_pred             CCCccc-cCCCCcchHHHHHhhhhcCCCCc--hHHHHHHHHHHHHHhcCHHHHHHHHHHHHccC---C------------
Q 014256           44 PSPSGN-SYSRNYDPVSHISSSLMNEESTP--DATSEKELGNECFKQKKFKEAIDCYSRSIALS---P------------  105 (428)
Q Consensus        44 ~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~--~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~---p------------  105 (428)
                      .++... +.|.++-|...+.++...++...  ........+..+...|+..+|+..+...+...   +            
T Consensus       151 ~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~  230 (352)
T PF02259_consen  151 KFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSG  230 (352)
T ss_pred             HHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhc
Confidence            333333 67788888888887776542111  12224567778888888888888777776610   0            


Q ss_pred             -------------c-------HHHHHHHHHHHHHh------cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 014256          106 -------------T-------AVAYANRAMAYLKL------RRFQEAEDDCTEALNLDDRYIKAYSRRATARKEL  154 (428)
Q Consensus       106 -------------~-------~~~~~nla~~~~~~------~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~l  154 (428)
                                   .       +.++..+|......      +.++++...|..++.++|...++|+.+|..+..+
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~  305 (352)
T PF02259_consen  231 LLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKL  305 (352)
T ss_pred             cccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHH
Confidence                         0       33445555555555      6677777888888888888888887777665543

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=95.06  E-value=0.35  Score=42.07  Aligned_cols=82  Identities=12%  Similarity=-0.051  Sum_probs=73.5

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 014256           76 SEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKEL  154 (428)
Q Consensus        76 ~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~l  154 (428)
                      .+.....+-...++.+++...+...--+.|. +..-..-|..++..|+|.+|+..++......|..+.+...++.|+..+
T Consensus        12 gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~   91 (160)
T PF09613_consen   12 GLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYAL   91 (160)
T ss_pred             HHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHc
Confidence            3667778888889999999999998889999 778888899999999999999999999999999999888999999999


Q ss_pred             CCH
Q 014256          155 GKL  157 (428)
Q Consensus       155 g~~  157 (428)
                      |+.
T Consensus        92 ~D~   94 (160)
T PF09613_consen   92 GDP   94 (160)
T ss_pred             CCh
Confidence            985

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=95.06  E-value=0.53  Score=46.81  Aligned_cols=126  Identities=17%  Similarity=0.215  Sum_probs=84.7

Q ss_pred             CCCCcchHHHHHhhhhc-CCCCchHHHHHHHHHHHHH---------hcCHHHHHHHHHHHHccCCcHHHHHHHHHHHHHh
Q 014256           51 YSRNYDPVSHISSSLMN-EESTPDATSEKELGNECFK---------QKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKL  120 (428)
Q Consensus        51 ~g~~~~Ai~~~~~al~~-~p~~~~a~~~~~lg~~~~~---------~g~~~~Ai~~y~~al~~~p~~~~~~nla~~~~~~  120 (428)
                      .|+.++|+..+..++.. .+..++.  +...|.+|..         ....++|+.+|.++.+++|+.-.-.|.+.++...
T Consensus       195 ~gdre~Al~il~~~l~~~~~~~~d~--~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~  272 (374)
T PF13281_consen  195 PGDREKALQILLPVLESDENPDPDT--LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLA  272 (374)
T ss_pred             CCCHHHHHHHHHHHHhccCCCChHH--HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHc
Confidence            68999999999995544 4444444  4466665543         2347899999999999998855556777777777


Q ss_pred             cC-HHHHHHHHHHHH-------hcC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHH
Q 014256          121 RR-FQEAEDDCTEAL-------NLD----DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK  178 (428)
Q Consensus       121 ~~-~~eA~~~~~~al-------~l~----p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~  178 (428)
                      |. ++...+...-.+       +..    -.+.-.+..++.+..-.|++++|.+.+++++++.|..=+..
T Consensus       273 g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l~  342 (374)
T PF13281_consen  273 GHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWELE  342 (374)
T ss_pred             CCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhHH
Confidence            65 322222222121       111    12344556677788889999999999999999987655443

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=94.87  E-value=0.57  Score=48.48  Aligned_cols=124  Identities=15%  Similarity=-0.020  Sum_probs=94.3

Q ss_pred             hHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHH-HHHHHH
Q 014256           57 PVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED-DCTEAL  134 (428)
Q Consensus        57 Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~-~~~~al  134 (428)
                      ++..+..-+.+++.+........+...+...++...+.-....++..+|. ..++.|+|.+....|....+.. ++..+.
T Consensus        50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~  129 (620)
T COG3914          50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAE  129 (620)
T ss_pred             HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            55566666667776665422222566777788888888899999999998 8888899888777776555554 455589


Q ss_pred             hcCCCCHHHHHHH------HHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHH
Q 014256          135 NLDDRYIKAYSRR------ATARKELGKLKESIEDSEFALRLEPQNQEIKKQ  180 (428)
Q Consensus       135 ~l~p~~~~a~~~l------g~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~  180 (428)
                      ...|++......+      |.....+|+..++..++.++..+.|.++.+.+.
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~  181 (620)
T COG3914         130 WLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGA  181 (620)
T ss_pred             hcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhH
Confidence            9999987765555      888888999999999999999999999877443

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=94.86  E-value=0.27  Score=41.36  Aligned_cols=80  Identities=13%  Similarity=0.131  Sum_probs=64.4

Q ss_pred             chHHHHHHHHHHHHHhc---CHHHHHHHHHHHHc-cCCc--HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHH
Q 014256           72 PDATSEKELGNECFKQK---KFKEAIDCYSRSIA-LSPT--AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYS  145 (428)
Q Consensus        72 ~~a~~~~~lg~~~~~~g---~~~~Ai~~y~~al~-~~p~--~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~  145 (428)
                      ......+++++++....   +..+.+.+++..+. -.|.  -...+.+|..+.++++|+.++.+++..++..|+|..+.-
T Consensus        30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~  109 (149)
T KOG3364|consen   30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE  109 (149)
T ss_pred             chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence            34555788999998864   56788999999997 5565  567778999999999999999999999999999987755


Q ss_pred             HHHHHH
Q 014256          146 RRATAR  151 (428)
Q Consensus       146 ~lg~~~  151 (428)
                      ..-.+.
T Consensus       110 Lk~~ie  115 (149)
T KOG3364|consen  110 LKETIE  115 (149)
T ss_pred             HHHHHH
Confidence            444433

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=94.82  E-value=0.046  Score=49.97  Aligned_cols=61  Identities=16%  Similarity=0.255  Sum_probs=50.6

Q ss_pred             HHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q 014256          116 AYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE  176 (428)
Q Consensus       116 ~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~  176 (428)
                      ...+.++.+.|.+.|.+++.+.|.....|+++|......|+++.|...|+++++++|.+..
T Consensus         4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~   64 (287)
T COG4976           4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG   64 (287)
T ss_pred             hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence            3456678888888888888888888888888888888888888888888888888887643

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=94.74  E-value=0.19  Score=39.40  Aligned_cols=62  Identities=18%  Similarity=0.157  Sum_probs=41.1

Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc--HHHHHHHHHHHHHH
Q 014256          127 EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN--QEIKKQLAEVKSLY  188 (428)
Q Consensus       127 ~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~--~~~~~~l~~a~~~~  188 (428)
                      +..+.+.+..+|++..+.+.+|.++...|++++|++.+-.+++.++++  ..++..+-.+...+
T Consensus         8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~l   71 (90)
T PF14561_consen    8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELL   71 (90)
T ss_dssp             HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHc
Confidence            456677777888888888888888888888888888888888777655  44444444444433

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.35  E-value=0.31  Score=45.15  Aligned_cols=122  Identities=16%  Similarity=0.113  Sum_probs=76.6

Q ss_pred             Cccc-cCCCCcchHHHHHhhhhcCCCCc----hHHHHHHHHHHHHHhcCHHHHHHHHHHHHccC-----Cc-HHHHHHHH
Q 014256           46 PSGN-SYSRNYDPVSHISSSLMNEESTP----DATSEKELGNECFKQKKFKEAIDCYSRSIALS-----PT-AVAYANRA  114 (428)
Q Consensus        46 ~~~y-~~g~~~~Ai~~~~~al~~~p~~~----~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~-----p~-~~~~~nla  114 (428)
                      +.+| ..+++++|..++.++..-..++.    .+..+-..|.......++.++..+|+++..+.     |+ +..-...|
T Consensus        38 AvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKA  117 (308)
T KOG1585|consen   38 AVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKA  117 (308)
T ss_pred             HHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHH
Confidence            3445 66788888888888875433221    12234455666666778888888888887763     33 22334455


Q ss_pred             HHHHHhcCHHHHHHHHHHHHhcCC---CC---HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 014256          115 MAYLKLRRFQEAEDDCTEALNLDD---RY---IKAYSRRATARKELGKLKESIEDSEFA  167 (428)
Q Consensus       115 ~~~~~~~~~~eA~~~~~~al~l~p---~~---~~a~~~lg~~~~~lg~~~eA~~~~~~a  167 (428)
                      .=.+...+.++|++.|++++.+--   ..   ...+-..+.++.++.+|.+|-..+.+-
T Consensus       118 ak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe  176 (308)
T KOG1585|consen  118 AKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKE  176 (308)
T ss_pred             HHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHh
Confidence            556667788888888888776532   22   233444566777777787776665543

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=94.34  E-value=0.7  Score=43.62  Aligned_cols=71  Identities=17%  Similarity=0.151  Sum_probs=65.5

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH
Q 014256          107 AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI  177 (428)
Q Consensus       107 ~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~  177 (428)
                      .....|+=..|...++++.|..+..+.+.++|.++.-+--+|.+|.++|.+.-|++++...++..|+++.+
T Consensus       181 ~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a  251 (269)
T COG2912         181 SRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIA  251 (269)
T ss_pred             HHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHH
Confidence            44566777789999999999999999999999999999999999999999999999999999999998776

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.26  E-value=0.88  Score=46.12  Aligned_cols=119  Identities=12%  Similarity=0.032  Sum_probs=90.3

Q ss_pred             cCCCCcchHHHHHhhhhcC---CC-----CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc----HHHHHHHHHHH
Q 014256           50 SYSRNYDPVSHISSSLMNE---ES-----TPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAY  117 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~---p~-----~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~nla~~~  117 (428)
                      -.|++.+|++......+-.   |.     ...+..+..+|.-+..-|.|+.|...|..|.+.-..    +.+-.|+|..|
T Consensus       335 v~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~Y  414 (629)
T KOG2300|consen  335 VRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISY  414 (629)
T ss_pred             HhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHH
Confidence            6788888888777665543   22     124556788999999999999999999999987654    55667899999


Q ss_pred             HHhcCHHHHHHHHHHHHhcCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 014256          118 LKLRRFQEAEDDCTEALNLDDRY----------IKAYSRRATARKELGKLKESIEDSEFALRLE  171 (428)
Q Consensus       118 ~~~~~~~eA~~~~~~al~l~p~~----------~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~  171 (428)
                      +..++-+.   .++-.=.+.|.|          ..++|..|...+..+++.||...+.+.++..
T Consensus       415 L~~~~~ed---~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma  475 (629)
T KOG2300|consen  415 LRIGDAED---LYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA  475 (629)
T ss_pred             HHhccHHH---HHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence            99887443   233222345543          3568888999999999999999999999886

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=94.18  E-value=0.56  Score=36.77  Aligned_cols=46  Identities=26%  Similarity=0.256  Sum_probs=25.2

Q ss_pred             HHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 014256           95 DCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY  140 (428)
Q Consensus        95 ~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~  140 (428)
                      ..+++.++.+|+ ..+.+.+|..++..|++++|++.+-.+++.++++
T Consensus         9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~   55 (90)
T PF14561_consen    9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY   55 (90)
T ss_dssp             HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            344555555555 5555556666666666666666666666555544

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=93.94  E-value=0.11  Score=33.53  Aligned_cols=27  Identities=41%  Similarity=0.391  Sum_probs=13.3

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 014256          109 AYANRAMAYLKLRRFQEAEDDCTEALN  135 (428)
Q Consensus       109 ~~~nla~~~~~~~~~~eA~~~~~~al~  135 (428)
                      ++.++|.+|..+|+|++|+..+.+++.
T Consensus         4 ~~~~la~~~~~~g~~~~A~~~~~~al~   30 (42)
T PF13374_consen    4 ALNNLANAYRAQGRYEEALELLEEALE   30 (42)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence            344555555555555555555555543

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=93.94  E-value=1.2  Score=44.06  Aligned_cols=129  Identities=9%  Similarity=0.017  Sum_probs=99.3

Q ss_pred             hhhcCCCccc---cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCcHHHHHHHHH-
Q 014256           40 SAKKPSPSGN---SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAM-  115 (428)
Q Consensus        40 ~a~~~~~~~y---~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~~~~~~nla~-  115 (428)
                      ..+..++..+   ..|+-..|.+.-.++-++-..+.+...+...++.-.-.|+|+.|...|+..+. +|.....-.+|. 
T Consensus        83 rgyqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLy  161 (531)
T COG3898          83 RGYQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLY  161 (531)
T ss_pred             hHHHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHH
Confidence            3444455554   67888888888887766655666666677888999999999999999987765 676444444443 


Q ss_pred             -HHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 014256          116 -AYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALR  169 (428)
Q Consensus       116 -~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~  169 (428)
                       --..+|.++.|..+.+.+-...|.-+-++.-.-..+...|+|+.|++.......
T Consensus       162 leAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~  216 (531)
T COG3898         162 LEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRA  216 (531)
T ss_pred             HHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence             344678999999999999999999988888777888899999999988776553

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=93.83  E-value=0.22  Score=53.31  Aligned_cols=93  Identities=11%  Similarity=0.034  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHH----------ccCCc-----------HHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 014256           77 EKELGNECFKQKKFKEAIDCYSRSI----------ALSPT-----------AVAYANRAMAYLKLRRFQEAEDDCTEALN  135 (428)
Q Consensus        77 ~~~lg~~~~~~g~~~~Ai~~y~~al----------~~~p~-----------~~~~~nla~~~~~~~~~~eA~~~~~~al~  135 (428)
                      +++.+.-+...++.+.|+++|+++-          .-+|.           ..+|...|......|+.+.|+..|..|-.
T Consensus       861 yy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D  940 (1416)
T KOG3617|consen  861 YYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD  940 (1416)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh
Confidence            7788888888999999999998752          22332           35666778888889999999999888753


Q ss_pred             c---------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 014256          136 L---------------------DDRYIKAYSRRATARKELGKLKESIEDSEFALR  169 (428)
Q Consensus       136 l---------------------~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~  169 (428)
                      .                     ...+..|.|.+|..|...|++.+|+..|.++-.
T Consensus       941 ~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa  995 (1416)
T KOG3617|consen  941 YFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQA  995 (1416)
T ss_pred             hhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            2                     235567889999999999999999998877644

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.82  E-value=4.5  Score=35.80  Aligned_cols=120  Identities=7%  Similarity=-0.023  Sum_probs=91.6

Q ss_pred             cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCcH-----HHHHHHHHHHHHhcCHH
Q 014256           50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTA-----VAYANRAMAYLKLRRFQ  124 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~~-----~~~~nla~~~~~~~~~~  124 (428)
                      ..+..++|+..|..+-+..-...........|-+....|+-..|+..|.++-...|-+     .+...-|..+...|-|+
T Consensus        70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~  149 (221)
T COG4649          70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD  149 (221)
T ss_pred             HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence            4577888888888887776666666667788999999999999999999988766542     23444567777889999


Q ss_pred             HHHHHHHHHH-hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 014256          125 EAEDDCTEAL-NLDDRYIKAYSRRATARKELGKLKESIEDSEFALR  169 (428)
Q Consensus       125 eA~~~~~~al-~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~  169 (428)
                      .-..-.+..- .-+|--..+.--||.+-.+.|++..|...|..+..
T Consensus       150 dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         150 DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence            8776555432 22344456667789999999999999999998876

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.74  E-value=3.6  Score=38.39  Aligned_cols=98  Identities=21%  Similarity=0.172  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHccCC---c----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-----CCCHHHH
Q 014256           77 EKELGNECFKQKKFKEAIDCYSRSIALSP---T----AVAYANRAMAYLKLRRFQEAEDDCTEALNLD-----DRYIKAY  144 (428)
Q Consensus        77 ~~~lg~~~~~~g~~~~Ai~~y~~al~~~p---~----~~~~~nla~~~~~~~~~~eA~~~~~~al~l~-----p~~~~a~  144 (428)
                      +..-+++|...++|++|..|+.++++-..   .    +..|-..|+..-.+..+.+++..+++|..+.     |+-...-
T Consensus        34 yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAma  113 (308)
T KOG1585|consen   34 YEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMA  113 (308)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHH
Confidence            34456677778899999999999985432   1    4566677788888899999999999998764     3322222


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 014256          145 SRRATARKELGKLKESIEDSEFALRLEPQN  174 (428)
Q Consensus       145 ~~lg~~~~~lg~~~eA~~~~~~al~l~P~~  174 (428)
                      ...+--....-+.++|++.|++++.+--.+
T Consensus       114 leKAak~lenv~Pd~AlqlYqralavve~~  143 (308)
T KOG1585|consen  114 LEKAAKALENVKPDDALQLYQRALAVVEED  143 (308)
T ss_pred             HHHHHHHhhcCCHHHHHHHHHHHHHHHhcc
Confidence            233333344567789999999888765443

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=93.51  E-value=1  Score=41.40  Aligned_cols=99  Identities=12%  Similarity=0.070  Sum_probs=70.5

Q ss_pred             cCCCCcchHHHHHhhhhc-----CCCCchHHHHHHHHHHHHHhcC-------HHHHHHHHHHHHccC--Cc-----HHHH
Q 014256           50 SYSRNYDPVSHISSSLMN-----EESTPDATSEKELGNECFKQKK-------FKEAIDCYSRSIALS--PT-----AVAY  110 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~-----~p~~~~a~~~~~lg~~~~~~g~-------~~~Ai~~y~~al~~~--p~-----~~~~  110 (428)
                      ....+++|+..|.-++-.     .+....|..+..+|++|...|+       +..|++.|.++++..  |.     ..+.
T Consensus        89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~  168 (214)
T PF09986_consen   89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL  168 (214)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence            344567777776666443     2233456778889999998888       556777888887654  22     5678


Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHhcCCCCH-HHHHHHH
Q 014256          111 ANRAMAYLKLRRFQEAEDDCTEALNLDDRYI-KAYSRRA  148 (428)
Q Consensus       111 ~nla~~~~~~~~~~eA~~~~~~al~l~p~~~-~a~~~lg  148 (428)
                      +.+|..+.+.|++++|..+|.+++....... ..+.++|
T Consensus       169 YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~A  207 (214)
T PF09986_consen  169 YLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMA  207 (214)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHH
Confidence            8899999999999999999999997654333 3444444

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=93.50  E-value=0.14  Score=33.08  Aligned_cols=30  Identities=17%  Similarity=0.372  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHccC
Q 014256           75 TSEKELGNECFKQKKFKEAIDCYSRSIALS  104 (428)
Q Consensus        75 ~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~  104 (428)
                      .++.++|.+|...|+|++|+.++.+++.+.
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~   32 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEIR   32 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence            457899999999999999999999998763

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=93.48  E-value=0.045  Score=53.02  Aligned_cols=130  Identities=15%  Similarity=0.055  Sum_probs=91.8

Q ss_pred             hhhcccchhhhhccChhhhhcCCCccccCCCC------cchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHH
Q 014256           23 MKHKASSKDNLVSSSLKSAKKPSPSGNSYSRN------YDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDC   96 (428)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~a~~~~~~~y~~g~~------~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~   96 (428)
                      ...+..++..|.++++..|...+..+....++      .+...   +.-.....  ......+++.+-++.+.+..|+..
T Consensus       223 ~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~---~~~~~~~~--r~~~~~n~~~~~lk~~~~~~a~~~  297 (372)
T KOG0546|consen  223 EKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQEN---RIPPLREL--RFSIRRNLAAVGLKVKGRGGARFR  297 (372)
T ss_pred             hhhhccchhhhhhccHhHHHHHHHHHhhhhccccccccccccc---cccccccc--ccccccchHHhcccccCCCcceec
Confidence            45566788888888888887766666411111      11111   00001111  111245678888999999999999


Q ss_pred             HHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 014256           97 YSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKL  157 (428)
Q Consensus        97 y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~  157 (428)
                      -..++..++. ..+++.+++.++.+.++++|++++..+....|.+......+..+......+
T Consensus       298 ~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~  359 (372)
T KOG0546|consen  298 TNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQY  359 (372)
T ss_pred             cccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHH
Confidence            8888887777 788999999999999999999999999999999987766666655555444

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=93.35  E-value=4  Score=39.01  Aligned_cols=123  Identities=13%  Similarity=-0.010  Sum_probs=88.4

Q ss_pred             cCCCCcchHHHHHhhhhcC----CCCc--hHHHHHHHHHHHHHhc-CHHHHHHHHHHHHcc----CC------c-----H
Q 014256           50 SYSRNYDPVSHISSSLMNE----ESTP--DATSEKELGNECFKQK-KFKEAIDCYSRSIAL----SP------T-----A  107 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~----p~~~--~a~~~~~lg~~~~~~g-~~~~Ai~~y~~al~~----~p------~-----~  107 (428)
                      +.|+++.|..+|.++-...    |...  -+..+++.|...+..+ +|+.|+.++++++++    ..      +     .
T Consensus         5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~   84 (278)
T PF08631_consen    5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRL   84 (278)
T ss_pred             hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHH
Confidence            6789999999999986654    2221  2445889999999999 999999999999887    21      1     3


Q ss_pred             HHHHHHHHHHHHhcCHHHHHH---HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 014256          108 VAYANRAMAYLKLRRFQEAED---DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEP  172 (428)
Q Consensus       108 ~~~~nla~~~~~~~~~~eA~~---~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P  172 (428)
                      .++..++.+|+..+.++...+   ..+.+-.-.|+.+..++..-.+....++.+++.+.+.+.+.--+
T Consensus        85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~  152 (278)
T PF08631_consen   85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD  152 (278)
T ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence            456778999999887654433   33334444577777764444444448889999999998887543

It is also involved in sporulation [].

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=93.02  E-value=1.1  Score=36.87  Aligned_cols=86  Identities=17%  Similarity=0.140  Sum_probs=63.4

Q ss_pred             cCCCCcchHHHHHhhhhcCCCC----------chHHHHHHHHHHHHHhcCHHHHHHHHHHHHc-------cCCc-----H
Q 014256           50 SYSRNYDPVSHISSSLMNEEST----------PDATSEKELGNECFKQKKFKEAIDCYSRSIA-------LSPT-----A  107 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~~----------~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~-------~~p~-----~  107 (428)
                      ..|.|++|...+.+++......          .++.++-.++..+...|+|++++..-.+++.       ++.+     .
T Consensus        21 ~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWI  100 (144)
T PF12968_consen   21 QDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWI  100 (144)
T ss_dssp             HHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHH
Confidence            4577888999999988764332          2456677889999999999987776666554       4544     3


Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 014256          108 VAYANRAMAYLKLRRFQEAEDDCTEALN  135 (428)
Q Consensus       108 ~~~~nla~~~~~~~~~~eA~~~~~~al~  135 (428)
                      .+-+++|.++-.+|+.++|+..|..+.+
T Consensus       101 aaVfsra~Al~~~Gr~~eA~~~fr~agE  128 (144)
T PF12968_consen  101 AAVFSRAVALEGLGRKEEALKEFRMAGE  128 (144)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence            4568899999999999999999988764

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=92.78  E-value=0.3  Score=46.77  Aligned_cols=94  Identities=15%  Similarity=0.091  Sum_probs=77.8

Q ss_pred             HHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 014256           96 CYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSR-RATARKELGKLKESIEDSEFALRLEPQ  173 (428)
Q Consensus        96 ~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~-lg~~~~~lg~~~eA~~~~~~al~l~P~  173 (428)
                      .|.++-...|+ +..|...+....+.|.|.+--..|.+++..+|.++..|.. .+.-+...++++.+...|.++++++|.
T Consensus        95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~  174 (435)
T COG5191          95 ELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR  174 (435)
T ss_pred             eeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC
Confidence            34455555565 7888888888888899999999999999999999999887 455677889999999999999999999


Q ss_pred             cHHHHHHHHHHHHHHH
Q 014256          174 NQEIKKQLAEVKSLYE  189 (428)
Q Consensus       174 ~~~~~~~l~~a~~~~~  189 (428)
                      ++.++..+-...-.|-
T Consensus       175 ~p~iw~eyfr~El~yi  190 (435)
T COG5191         175 SPRIWIEYFRMELMYI  190 (435)
T ss_pred             CchHHHHHHHHHHHHH
Confidence            9999877666555443

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=92.69  E-value=2.5  Score=44.79  Aligned_cols=115  Identities=15%  Similarity=0.068  Sum_probs=91.0

Q ss_pred             cCCCCcchHHHHHhhhh-------cCCCCchHHHHHHHHHHHHHhc-----CHHHHHHHHHHHHccCCcHHHHHHHHHHH
Q 014256           50 SYSRNYDPVSHISSSLM-------NEESTPDATSEKELGNECFKQK-----KFKEAIDCYSRSIALSPTAVAYANRAMAY  117 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~-------~~p~~~~a~~~~~lg~~~~~~g-----~~~~Ai~~y~~al~~~p~~~~~~nla~~~  117 (428)
                      ...|.+.|+.+|..+..       ..  +..+  .+.+|.+|.+..     ++..|+.+|.++-.... +.+.+++|.+|
T Consensus       261 ~~~d~e~a~~~l~~aa~~~~~~a~~~--~~~a--~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~  335 (552)
T KOG1550|consen  261 VTQDLESAIEYLKLAAESFKKAATKG--LPPA--QYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLY  335 (552)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHhhc--CCcc--ccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHH
Confidence            45688899999999877       22  2334  668999999843     78999999999988754 55667788888


Q ss_pred             HHhc---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhhC
Q 014256          118 LKLR---RFQEAEDDCTEALNLDDRYIKAYSRRATARKEL----GKLKESIEDSEFALRLE  171 (428)
Q Consensus       118 ~~~~---~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~l----g~~~eA~~~~~~al~l~  171 (428)
                      ..-.   ++..|..+|..|..  -.+..+.+++|.+|..-    -+...|..++.++....
T Consensus       336 ~~g~~~~d~~~A~~yy~~Aa~--~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g  394 (552)
T KOG1550|consen  336 ETGTKERDYRRAFEYYSLAAK--AGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG  394 (552)
T ss_pred             HcCCccccHHHHHHHHHHHHH--cCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence            8765   67899999999875  45778999999988653    36789999999999887

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=92.55  E-value=1.1  Score=49.88  Aligned_cols=99  Identities=20%  Similarity=0.186  Sum_probs=78.5

Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHccCCc----HHHHHHHHHHHHHhc-------CHHHHHHHHHHHHhcCCCCHHHHHH
Q 014256           78 KELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLR-------RFQEAEDDCTEALNLDDRYIKAYSR  146 (428)
Q Consensus        78 ~~lg~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~nla~~~~~~~-------~~~eA~~~~~~al~l~p~~~~a~~~  146 (428)
                      .....++...+.|++|+..|++...-.|.    ..+.+..|...+.+-       .+++|+.-|++.. -.|.-+--|..
T Consensus       479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  557 (932)
T PRK13184        479 LAVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLG  557 (932)
T ss_pred             ccCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHh
Confidence            34566777888999999999999999887    678888898887653       3555555555432 23455666888


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH
Q 014256          147 RATARKELGKLKESIEDSEFALRLEPQNQEI  177 (428)
Q Consensus       147 lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~  177 (428)
                      .|.+|.++|+|++-+..|.-+++..|+++++
T Consensus       558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  588 (932)
T PRK13184        558 KALVYQRLGEYNEEIKSLLLALKRYSQHPEI  588 (932)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhcCCCCcc
Confidence            8999999999999999999999999999876

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.42  E-value=1.4  Score=42.74  Aligned_cols=98  Identities=12%  Similarity=0.016  Sum_probs=79.3

Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CCCC---HHHHHHHHHHHHHc
Q 014256           80 LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNL-DDRY---IKAYSRRATARKEL  154 (428)
Q Consensus        80 lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l-~p~~---~~a~~~lg~~~~~l  154 (428)
                      -+..++..|++.+|...+.+.+.-.|. -.++..--.+++-+|+...-...+.+.+-. +++-   ....-.++..+...
T Consensus       109 ~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~  188 (491)
T KOG2610|consen  109 KAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEEC  188 (491)
T ss_pred             hHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHh
Confidence            445677789999999999999999998 445555556777788888888888888866 5554   55666678889999


Q ss_pred             CCHHHHHHHHHHHHhhCCCcHHH
Q 014256          155 GKLKESIEDSEFALRLEPQNQEI  177 (428)
Q Consensus       155 g~~~eA~~~~~~al~l~P~~~~~  177 (428)
                      |-|++|.....++++++|.+.-+
T Consensus       189 g~y~dAEk~A~ralqiN~~D~Wa  211 (491)
T KOG2610|consen  189 GIYDDAEKQADRALQINRFDCWA  211 (491)
T ss_pred             ccchhHHHHHHhhccCCCcchHH
Confidence            99999999999999999987654

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=92.37  E-value=3.7  Score=40.09  Aligned_cols=110  Identities=20%  Similarity=0.156  Sum_probs=85.2

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--C-C-------
Q 014256           74 ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-----AVAYANRAMAYLKLRRFQEAEDDCTEALNL--D-D-------  138 (428)
Q Consensus        74 a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-----~~~~~nla~~~~~~~~~~eA~~~~~~al~l--~-p-------  138 (428)
                      +..|...+..+.+.|.++.|...+.++...++.     +.+.+..+..+...|+..+|+..+...+..  . +       
T Consensus       146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~  225 (352)
T PF02259_consen  146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNA  225 (352)
T ss_pred             HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHH
Confidence            345788899999999999999999999887632     566777888999999999999988887771  0 0       


Q ss_pred             ------------------------CCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 014256          139 ------------------------RYIKAYSRRATARKEL------GKLKESIEDSEFALRLEPQNQEIKKQLAE  183 (428)
Q Consensus       139 ------------------------~~~~a~~~lg~~~~~l------g~~~eA~~~~~~al~l~P~~~~~~~~l~~  183 (428)
                                              ...++++.+|.....+      +..+++...|..++.++|+...++..+..
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~  300 (352)
T PF02259_consen  226 ELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL  300 (352)
T ss_pred             HHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence                                    0145677777777777      78888899999999999887776555444

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=92.35  E-value=4.8  Score=38.47  Aligned_cols=115  Identities=16%  Similarity=0.056  Sum_probs=62.9

Q ss_pred             CCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHH----hcCHHHHHHHHHHHHccCCc--HHHHHHHHHHHHHhc----
Q 014256           52 SRNYDPVSHISSSLMNEESTPDATSEKELGNECFK----QKKFKEAIDCYSRSIALSPT--AVAYANRAMAYLKLR----  121 (428)
Q Consensus        52 g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~----~g~~~~Ai~~y~~al~~~p~--~~~~~nla~~~~~~~----  121 (428)
                      .+...|..+|..+...  .+..+  .+.+|..|..    ..++.+|..+|.++......  ..+.+++|.+|..-.    
T Consensus        91 ~~~~~A~~~~~~~a~~--g~~~a--~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~  166 (292)
T COG0790          91 RDKTKAADWYRCAAAD--GLAEA--LFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALA  166 (292)
T ss_pred             ccHHHHHHHHHHHhhc--ccHHH--HHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhc
Confidence            3455566666644332  23333  4466666665    33666677777766665432  233555565555431    


Q ss_pred             ---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhhCC
Q 014256          122 ---RFQEAEDDCTEALNLDDRYIKAYSRRATARKEL----GKLKESIEDSEFALRLEP  172 (428)
Q Consensus       122 ---~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~l----g~~~eA~~~~~~al~l~P  172 (428)
                         +...|...|.++....  ++.+.+++|.+|..-    .++.+|..+|.++-....
T Consensus       167 ~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~  222 (292)
T COG0790         167 VAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD  222 (292)
T ss_pred             ccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC
Confidence               2235666666665554  556666666555431    255666666666666544

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=92.24  E-value=1.1  Score=45.62  Aligned_cols=87  Identities=13%  Similarity=0.060  Sum_probs=73.4

Q ss_pred             hHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcC-HHHHHHHHHHHH
Q 014256           57 PVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRR-FQEAEDDCTEAL  134 (428)
Q Consensus        57 Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~-~~eA~~~~~~al  134 (428)
                      -...|+.++..-+.+...  |......+.+.+.|.+--..|.+++..+|+ +.+|..-|.-.+..+. .+.|...+.+++
T Consensus        90 Iv~lyr~at~rf~~D~~l--W~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgL  167 (568)
T KOG2396|consen   90 IVFLYRRATNRFNGDVKL--WLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGL  167 (568)
T ss_pred             HHHHHHHHHHhcCCCHHH--HHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence            456788888877665555  778888777788899999999999999999 9999998888877776 899999999999


Q ss_pred             hcCCCCHHHHH
Q 014256          135 NLDDRYIKAYS  145 (428)
Q Consensus       135 ~l~p~~~~a~~  145 (428)
                      +.+|+++..|.
T Consensus       168 R~npdsp~Lw~  178 (568)
T KOG2396|consen  168 RFNPDSPKLWK  178 (568)
T ss_pred             hcCCCChHHHH
Confidence            99999987643

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=91.92  E-value=0.44  Score=48.66  Aligned_cols=91  Identities=16%  Similarity=-0.013  Sum_probs=76.3

Q ss_pred             ccCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHh---cCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHH
Q 014256           49 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQ---KKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQ  124 (428)
Q Consensus        49 y~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~---g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~  124 (428)
                      +..+....|+..|.+++...|.....  +.+++-++++.   |+.-.|+.....+++++|. ..+|+.++.++..++++.
T Consensus       385 ly~~~~~~~i~~~s~a~q~~~~~~~~--l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~  462 (758)
T KOG1310|consen  385 LYESIVSGAISHYSRAIQYVPDAIYL--LENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYL  462 (758)
T ss_pred             hhhHHHHHHHHHHHHHhhhccchhHH--HHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHH
Confidence            34566778999999999988875443  66788887774   6788899999999999998 889999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCH
Q 014256          125 EAEDDCTEALNLDDRYI  141 (428)
Q Consensus       125 eA~~~~~~al~l~p~~~  141 (428)
                      +|+++...+....|.+.
T Consensus       463 eal~~~~alq~~~Ptd~  479 (758)
T KOG1310|consen  463 EALSCHWALQMSFPTDV  479 (758)
T ss_pred             HhhhhHHHHhhcCchhh
Confidence            99999998888888664

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=91.87  E-value=1.1  Score=39.08  Aligned_cols=73  Identities=12%  Similarity=0.032  Sum_probs=62.6

Q ss_pred             cccCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcC
Q 014256           48 GNSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRR  122 (428)
Q Consensus        48 ~y~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~  122 (428)
                      +...++.+++...+.-+--+.|+......  ..|..++..|+|.+|+..++.+.+-.|. +.+-..++.|+..+|+
T Consensus        20 al~~~~~~D~e~lL~ALrvLRP~~~e~~~--~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D   93 (160)
T PF09613_consen   20 ALRLGDPDDAEALLDALRVLRPEFPELDL--FDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD   93 (160)
T ss_pred             HHccCChHHHHHHHHHHHHhCCCchHHHH--HHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence            34667889999999999889999988844  8899999999999999999998887787 7777778889887776

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=91.83  E-value=2.1  Score=42.60  Aligned_cols=97  Identities=14%  Similarity=0.012  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHcc----CCc-HHHHHHHHHHHHH---hcCHHHHHHHHHH-HHhcCCCCHHHHHHH
Q 014256           77 EKELGNECFKQKKFKEAIDCYSRSIAL----SPT-AVAYANRAMAYLK---LRRFQEAEDDCTE-ALNLDDRYIKAYSRR  147 (428)
Q Consensus        77 ~~~lg~~~~~~g~~~~Ai~~y~~al~~----~p~-~~~~~nla~~~~~---~~~~~eA~~~~~~-al~l~p~~~~a~~~l  147 (428)
                      ..++=..|....+|+.-+...+..-.+    -++ ....+.+|.++.+   .|+.++|+..+.. .....+.++..+..+
T Consensus       144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~  223 (374)
T PF13281_consen  144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLL  223 (374)
T ss_pred             HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHH
Confidence            445555677777888777777665554    122 4455667777777   7888888888888 445556778888888


Q ss_pred             HHHHHHc---------CCHHHHHHHHHHHHhhCCC
Q 014256          148 ATARKEL---------GKLKESIEDSEFALRLEPQ  173 (428)
Q Consensus       148 g~~~~~l---------g~~~eA~~~~~~al~l~P~  173 (428)
                      |.+|+.+         ...++|+..|.++..++|+
T Consensus       224 GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~  258 (374)
T PF13281_consen  224 GRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD  258 (374)
T ss_pred             HHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc
Confidence            8887754         1244556666666665543

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=91.50  E-value=3  Score=39.19  Aligned_cols=104  Identities=15%  Similarity=0.192  Sum_probs=84.6

Q ss_pred             HHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH-HHH
Q 014256           85 FKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLR-RFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLK-ESI  161 (428)
Q Consensus        85 ~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~-~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~-eA~  161 (428)
                      .+..+-..|+..-..+|.++|. ..+|..|=.|+..++ +..+-++.++..+.-+|+|..+|+.+-.+...+|++. .-+
T Consensus        54 ~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rEL  133 (318)
T KOG0530|consen   54 AKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFREL  133 (318)
T ss_pred             hccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchH
Confidence            3445667888888999999998 777777777776664 6778889999999999999999999999999999888 778


Q ss_pred             HHHHHHHhhCCCcHHHHHHHHHHHHHH
Q 014256          162 EDSEFALRLEPQNQEIKKQLAEVKSLY  188 (428)
Q Consensus       162 ~~~~~al~l~P~~~~~~~~l~~a~~~~  188 (428)
                      ...+.++..+..|-.++....=+.+.|
T Consensus       134 ef~~~~l~~DaKNYHaWshRqW~~r~F  160 (318)
T KOG0530|consen  134 EFTKLMLDDDAKNYHAWSHRQWVLRFF  160 (318)
T ss_pred             HHHHHHHhccccchhhhHHHHHHHHHH
Confidence            888999999998888865544444433

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=91.38  E-value=0.64  Score=47.01  Aligned_cols=130  Identities=14%  Similarity=0.045  Sum_probs=94.2

Q ss_pred             cCCCccccCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhc
Q 014256           43 KPSPSGNSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLR  121 (428)
Q Consensus        43 ~~~~~~y~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~  121 (428)
                      ..+..++..|+.-.|-..+..+|...|..+.-..  ..+.++...|+|+.|.....-+-.+-.. ..+..-+-....+++
T Consensus       294 ~si~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~--l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~  371 (831)
T PRK15180        294 LSITKQLADGDIIAASQQLFAALRNQQQDPVLIQ--LRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLA  371 (831)
T ss_pred             HHHHHHhhccCHHHHHHHHHHHHHhCCCCchhhH--HHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchh
Confidence            3344455778888888888888888888877633  6778888899999998877655443322 333333445567888


Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 014256          122 RFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN  174 (428)
Q Consensus       122 ~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~  174 (428)
                      ++++|.....-.+.-.-.++...---+..-..+|-+++|.-++++++.++|..
T Consensus       372 r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~  424 (831)
T PRK15180        372 RWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET  424 (831)
T ss_pred             hHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence            99999888877776666666665555666677888999999999999998753

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=91.35  E-value=0.85  Score=35.92  Aligned_cols=52  Identities=25%  Similarity=0.339  Sum_probs=27.7

Q ss_pred             HHhcCHHHHHHHHHHHHccCCc----------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 014256           85 FKQKKFKEAIDCYSRSIALSPT----------AVAYANRAMAYLKLRRFQEAEDDCTEALNL  136 (428)
Q Consensus        85 ~~~g~~~~Ai~~y~~al~~~p~----------~~~~~nla~~~~~~~~~~eA~~~~~~al~l  136 (428)
                      .+.|+|..|++.+.+.......          ..+..++|.++...|++++|+..+++|+.+
T Consensus         9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~   70 (94)
T PF12862_consen    9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL   70 (94)
T ss_pred             HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            4556666666666665543211          123444555555555555555555555544

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=91.16  E-value=7.9  Score=37.92  Aligned_cols=112  Identities=11%  Similarity=-0.014  Sum_probs=81.0

Q ss_pred             HHHHHhhhhcCCCCchHHHHHHHHHHHHHh------------cCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHH
Q 014256           58 VSHISSSLMNEESTPDATSEKELGNECFKQ------------KKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQ  124 (428)
Q Consensus        58 i~~~~~al~~~p~~~~a~~~~~lg~~~~~~------------g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~  124 (428)
                      ...|++.+..+|.+..+  |..+...--..            .-.+..+.+|++|++.+|+ ..++..+-.+..+..+-+
T Consensus         5 ~~el~~~v~~~P~di~~--Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~   82 (321)
T PF08424_consen    5 TAELNRRVRENPHDIEA--WLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSE   82 (321)
T ss_pred             HHHHHHHHHhCcccHHH--HHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHH
Confidence            35678888999988776  54554332222            2256778899999999998 777776666777888888


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHhhC
Q 014256          125 EAEDDCTEALNLDDRYIKAYSRRATARK---ELGKLKESIEDSEFALRLE  171 (428)
Q Consensus       125 eA~~~~~~al~l~p~~~~a~~~lg~~~~---~lg~~~eA~~~~~~al~l~  171 (428)
                      +...-+++++..+|.++..|..+-....   ..-.+......|.++++.-
T Consensus        83 ~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L  132 (321)
T PF08424_consen   83 KLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRAL  132 (321)
T ss_pred             HHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHH
Confidence            8899999999999999887665443322   2335778888888887643

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=91.11  E-value=1.4  Score=41.61  Aligned_cols=73  Identities=18%  Similarity=0.206  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 014256           77 EKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRAT  149 (428)
Q Consensus        77 ~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~  149 (428)
                      ..++=..+...++++.|..+-.+.+.++|. +.-+.-+|.+|.++|.+..|+.+++..+..-|+.+.+-.-++.
T Consensus       184 l~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~  257 (269)
T COG2912         184 LRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQ  257 (269)
T ss_pred             HHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHH
Confidence            456667888899999999999999999998 7788999999999999999999999999999999877554443

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=91.02  E-value=2.7  Score=36.13  Aligned_cols=79  Identities=13%  Similarity=-0.021  Sum_probs=59.2

Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 014256           79 ELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKL  157 (428)
Q Consensus        79 ~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~  157 (428)
                      .....-...++..++...+...--+.|+ +..-..-|..++..|+|.+|+..+.....-.+..+.+...++.|++.+|+.
T Consensus        15 ~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp   94 (153)
T TIGR02561        15 EVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDA   94 (153)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence            4444444577788887777777777787 666666788888888888888888888877777777777788888888764

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=90.98  E-value=2.5  Score=44.73  Aligned_cols=123  Identities=14%  Similarity=0.017  Sum_probs=89.0

Q ss_pred             hhhcCCCccccCC------CCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhc---CHHHHHHHHHHHHccCCcHHHH
Q 014256           40 SAKKPSPSGNSYS------RNYDPVSHISSSLMNEESTPDATSEKELGNECFKQK---KFKEAIDCYSRSIALSPTAVAY  110 (428)
Q Consensus        40 ~a~~~~~~~y~~g------~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g---~~~~Ai~~y~~al~~~p~~~~~  110 (428)
                      .+...+|.+|..|      ++..|..+|.++-...  ++.+  .+.+|.++....   ++..|..+|..|....- ..++
T Consensus       289 ~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a--~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~-~~A~  363 (552)
T KOG1550|consen  289 PAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPDA--QYLLGVLYETGTKERDYRRAFEYYSLAAKAGH-ILAI  363 (552)
T ss_pred             ccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--CchH--HHHHHHHHHcCCccccHHHHHHHHHHHHHcCC-hHHH
Confidence            3445566666222      6677999999998776  4455  669999998765   68899999999986543 6778


Q ss_pred             HHHHHHHHHh----cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHh
Q 014256          111 ANRAMAYLKL----RRFQEAEDDCTEALNLDDRYIKAYSRRATARKEL-GKLKESIEDSEFALR  169 (428)
Q Consensus       111 ~nla~~~~~~----~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~l-g~~~eA~~~~~~al~  169 (428)
                      +++|.||..-    .+...|..++.++...+  ++.+.+.++..+... +.+..+...+...-.
T Consensus       364 ~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~  425 (552)
T KOG1550|consen  364 YRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAE  425 (552)
T ss_pred             HHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHH
Confidence            8888888653    47999999999999988  677777777766544 666655554444333

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=90.69  E-value=0.43  Score=30.90  Aligned_cols=29  Identities=28%  Similarity=0.331  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 014256          142 KAYSRRATARKELGKLKESIEDSEFALRL  170 (428)
Q Consensus       142 ~a~~~lg~~~~~lg~~~eA~~~~~~al~l  170 (428)
                      .+|..+|.+-...++|++|+.+|.+++.+
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            35667777777777777777777777765

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=90.65  E-value=0.45  Score=47.34  Aligned_cols=94  Identities=20%  Similarity=0.175  Sum_probs=73.6

Q ss_pred             hhcCCCccccCCCCcchHHHHHhhhhcCCC--------Cch--------HHHHHHHHHHHHHhcCHHHHHHHHHHHHccC
Q 014256           41 AKKPSPSGNSYSRNYDPVSHISSSLMNEES--------TPD--------ATSEKELGNECFKQKKFKEAIDCYSRSIALS  104 (428)
Q Consensus        41 a~~~~~~~y~~g~~~~Ai~~~~~al~~~p~--------~~~--------a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~  104 (428)
                      |+..-..+|++++|..|+-.|..+|++...        .+.        ....-.+..||.+.++.+.|+.+-.++|.++
T Consensus       179 AL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~ln  258 (569)
T PF15015_consen  179 ALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLN  258 (569)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcC
Confidence            455555667888888888888888876321        111        1123467889999999999999999999999


Q ss_pred             Cc-HHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 014256          105 PT-AVAYANRAMAYLKLRRFQEAEDDCTEAL  134 (428)
Q Consensus       105 p~-~~~~~nla~~~~~~~~~~eA~~~~~~al  134 (428)
                      |. ..-+...|.|+..+.+|.+|-..+.-+.
T Consensus       259 P~~frnHLrqAavfR~LeRy~eAarSamia~  289 (569)
T PF15015_consen  259 PSYFRNHLRQAAVFRRLERYSEAARSAMIAD  289 (569)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            98 7788889999999999999988776654

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=90.61  E-value=7.1  Score=37.27  Aligned_cols=110  Identities=15%  Similarity=-0.038  Sum_probs=79.3

Q ss_pred             hhcCCCcccc-----CCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhc-------CHHHHHHHHHHHHccCCcHH
Q 014256           41 AKKPSPSGNS-----YSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQK-------KFKEAIDCYSRSIALSPTAV  108 (428)
Q Consensus        41 a~~~~~~~y~-----~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g-------~~~~Ai~~y~~al~~~p~~~  108 (428)
                      +...+|..|.     ..++.+|..+|.++-...-... ....+.+|..|..-.       +...|+..|.++.... .+.
T Consensus       111 a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a-~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~-~~~  188 (292)
T COG0790         111 ALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEA-ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG-NPD  188 (292)
T ss_pred             HHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhH-HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc-CHH
Confidence            4444555552     3388899999999988753221 233557777777641       3347999999987765 367


Q ss_pred             HHHHHHHHHHH----hcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 014256          109 AYANRAMAYLK----LRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG  155 (428)
Q Consensus       109 ~~~nla~~~~~----~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg  155 (428)
                      +.+++|.+|..    ..++.+|..+|.++.....  ..+.++++ ++...|
T Consensus       189 a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g  236 (292)
T COG0790         189 AQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG  236 (292)
T ss_pred             HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence            78888888866    3489999999999999888  88899999 666655

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=90.24  E-value=5.1  Score=38.32  Aligned_cols=94  Identities=18%  Similarity=0.192  Sum_probs=70.1

Q ss_pred             HHHhcCHHHHHHHHHHHHcc----CCc-----HHHHHHHHHHHHHhc-CHHHHHHHHHHHHhc----CC---CC------
Q 014256           84 CFKQKKFKEAIDCYSRSIAL----SPT-----AVAYANRAMAYLKLR-RFQEAEDDCTEALNL----DD---RY------  140 (428)
Q Consensus        84 ~~~~g~~~~Ai~~y~~al~~----~p~-----~~~~~nla~~~~~~~-~~~eA~~~~~~al~l----~p---~~------  140 (428)
                      ..++|+++.|..+|.++-..    +|+     +..++|.|...+..+ ++++|..++++|..+    .+   ..      
T Consensus         3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el   82 (278)
T PF08631_consen    3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL   82 (278)
T ss_pred             chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence            35789999999999998653    454     577999999999999 999999999999887    32   11      


Q ss_pred             -HHHHHHHHHHHHHcCCHH---HHHHHHHHHHhhCCCcHHH
Q 014256          141 -IKAYSRRATARKELGKLK---ESIEDSEFALRLEPQNQEI  177 (428)
Q Consensus       141 -~~a~~~lg~~~~~lg~~~---eA~~~~~~al~l~P~~~~~  177 (428)
                       ..++..++.+|...+.++   +|...++.+-...|+.+..
T Consensus        83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~  123 (278)
T PF08631_consen   83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEV  123 (278)
T ss_pred             HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHH
Confidence             345777888888888764   4555555555555765554

It is also involved in sporulation [].

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=90.22  E-value=2  Score=33.75  Aligned_cols=58  Identities=21%  Similarity=0.273  Sum_probs=46.2

Q ss_pred             HHHHHhcCHHHHHHHHHHHHhcCC----C-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 014256          115 MAYLKLRRFQEAEDDCTEALNLDD----R-----YIKAYSRRATARKELGKLKESIEDSEFALRLEP  172 (428)
Q Consensus       115 ~~~~~~~~~~eA~~~~~~al~l~p----~-----~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P  172 (428)
                      .-.++.|+|.+|.+.+.+......    .     ...+..++|.++...|++++|+..+++++++..
T Consensus         6 ~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar   72 (94)
T PF12862_consen    6 LNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR   72 (94)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            345678999999887777665432    1     256788899999999999999999999998864

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=90.17  E-value=0.7  Score=41.13  Aligned_cols=102  Identities=12%  Similarity=0.011  Sum_probs=76.6

Q ss_pred             cChhhhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCc-hHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-------
Q 014256           36 SSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTP-DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-------  106 (428)
Q Consensus        36 ~~~~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~-~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-------  106 (428)
                      .....++..+|..| ..|+++.|++.|.++........ ....+..+-.+.+..|+|..+..+..++-..-..       
T Consensus        33 esir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~  112 (177)
T PF10602_consen   33 ESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERR  112 (177)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHH
Confidence            33445667788888 99999999999999887654332 2344667778888899999999998888665321       


Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 014256          107 AVAYANRAMAYLKLRRFQEAEDDCTEALNLD  137 (428)
Q Consensus       107 ~~~~~nla~~~~~~~~~~eA~~~~~~al~l~  137 (428)
                      ..+-...|..++..++|..|...|-.+..-.
T Consensus       113 nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~  143 (177)
T PF10602_consen  113 NRLKVYEGLANLAQRDFKEAAELFLDSLSTF  143 (177)
T ss_pred             HHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence            3345567889999999999999887776444

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=90.13  E-value=2.6  Score=40.32  Aligned_cols=99  Identities=18%  Similarity=0.140  Sum_probs=68.9

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHH-HH--HHHH
Q 014256           77 EKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSR-RA--TARK  152 (428)
Q Consensus        77 ~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~-lg--~~~~  152 (428)
                      -...|......|++.+|...|..++...|. ..+...++.||+..|+.+.|...+...-.-...  +.+.. .+  ..+.
T Consensus       137 ~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~--~~~~~l~a~i~ll~  214 (304)
T COG3118         137 ALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQD--KAAHGLQAQIELLE  214 (304)
T ss_pred             HHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchh--hHHHHHHHHHHHHH
Confidence            446778888999999999999999999998 888899999999999999998876653221111  12222 11  2222


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCcHHHH
Q 014256          153 ELGKLKESIEDSEFALRLEPQNQEIK  178 (428)
Q Consensus       153 ~lg~~~eA~~~~~~al~l~P~~~~~~  178 (428)
                      +.....+ ...+.+.+.-+|++.++.
T Consensus       215 qaa~~~~-~~~l~~~~aadPdd~~aa  239 (304)
T COG3118         215 QAAATPE-IQDLQRRLAADPDDVEAA  239 (304)
T ss_pred             HHhcCCC-HHHHHHHHHhCCCCHHHH
Confidence            2222211 246777788899998873

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=90.05  E-value=2.6  Score=31.99  Aligned_cols=56  Identities=11%  Similarity=0.163  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHccCCc-H---HHHHHHHHHHHHhcCHHHHHHHHHH
Q 014256           77 EKELGNECFKQKKFKEAIDCYSRSIALSPT-A---VAYANRAMAYLKLRRFQEAEDDCTE  132 (428)
Q Consensus        77 ~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~---~~~~nla~~~~~~~~~~eA~~~~~~  132 (428)
                      ....|.-++...+.++|+..+.++++..++ +   .+.-.+..+|...|+|.+.+...-+
T Consensus         9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~   68 (80)
T PF10579_consen    9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ   68 (80)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            446777778888888888888888887665 2   2334445667777777776665443

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=89.77  E-value=0.51  Score=30.55  Aligned_cols=28  Identities=25%  Similarity=0.350  Sum_probs=20.2

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 014256          109 AYANRAMAYLKLRRFQEAEDDCTEALNL  136 (428)
Q Consensus       109 ~~~nla~~~~~~~~~~eA~~~~~~al~l  136 (428)
                      +|..+|.+.+..++|++|+.+|.+++.+
T Consensus         3 v~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    3 VYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            5666777777777777777777777765

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=89.05  E-value=13  Score=37.72  Aligned_cols=136  Identities=13%  Similarity=0.103  Sum_probs=91.5

Q ss_pred             cCCC-CcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHH--HHHHHcc---------CCc----HHHHHHH
Q 014256           50 SYSR-NYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDC--YSRSIAL---------SPT----AVAYANR  113 (428)
Q Consensus        50 ~~g~-~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~--y~~al~~---------~p~----~~~~~nl  113 (428)
                      ..|. -+.|+..+..++...+.+....   +. ...+-..-|.+|+..  +.+.+.+         -|-    ...-+.+
T Consensus       391 ~~g~~dekalnLLk~il~ft~yD~ec~---n~-v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~L  466 (549)
T PF07079_consen  391 EIGQCDEKALNLLKLILQFTNYDIECE---NI-VFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFL  466 (549)
T ss_pred             hcCCccHHHHHHHHHHHHhccccHHHH---HH-HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHH
Confidence            4555 6778899999998887765432   22 233334456666542  3333332         221    3333333


Q ss_pred             --HHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHH
Q 014256          114 --AMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKE  191 (428)
Q Consensus       114 --a~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~~a  191 (428)
                        |..++..|+|.++.-.+.=..+++| .+.++-.+|.+.....+|++|..++..   +-|++........+|.....+-
T Consensus       467 aDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~---LP~n~~~~dskvqKAl~lCqKh  542 (549)
T PF07079_consen  467 ADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK---LPPNERMRDSKVQKALALCQKH  542 (549)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh---CCCchhhHHHHHHHHHHHHHHh
Confidence              4557789999999999999999999 899999999999999999999988754   5554444445666666666554


Q ss_pred             HH
Q 014256          192 VF  193 (428)
Q Consensus       192 ~~  193 (428)
                      +.
T Consensus       543 ~~  544 (549)
T PF07079_consen  543 LP  544 (549)
T ss_pred             hh
Confidence            43

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=88.87  E-value=2.1  Score=45.28  Aligned_cols=106  Identities=8%  Similarity=-0.051  Sum_probs=58.2

Q ss_pred             CCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc---HHHHHHHHHHHHHhcCHHHHH
Q 014256           51 YSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT---AVAYANRAMAYLKLRRFQEAE  127 (428)
Q Consensus        51 ~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~---~~~~~nla~~~~~~~~~~eA~  127 (428)
                      .|++++|.+.|-.+=..+   .       .-..+.+.|+|-.....++..-.-+.+   ..++.++|..+..+..|++|.
T Consensus       747 ~g~feeaek~yld~drrD---L-------Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~  816 (1189)
T KOG2041|consen  747 YGEFEEAEKLYLDADRRD---L-------AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAA  816 (1189)
T ss_pred             hcchhHhhhhhhccchhh---h-------hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            466677766665431111   0       112234455555555555443332222   445556666666666666665


Q ss_pred             HHHHHHH----------------------hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 014256          128 DDCTEAL----------------------NLDDRYIKAYSRRATARKELGKLKESIEDSEF  166 (428)
Q Consensus       128 ~~~~~al----------------------~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~  166 (428)
                      ++|.++-                      ..-|++.+.+-.+|.++...|..++|++.|-+
T Consensus       817 ~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr  877 (1189)
T KOG2041|consen  817 KYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLR  877 (1189)
T ss_pred             HHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence            5555432                      23366666777777777788888887776644

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=88.82  E-value=4.6  Score=41.10  Aligned_cols=114  Identities=11%  Similarity=0.163  Sum_probs=90.3

Q ss_pred             HHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 014256           85 FKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIED  163 (428)
Q Consensus        85 ~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~  163 (428)
                      ...|+.-.|-.-...++...|. +.....++.++..+|.|+.|..+..-+-..-..-.++..-+-.....+|++++|...
T Consensus       300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~  379 (831)
T PRK15180        300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALST  379 (831)
T ss_pred             hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHH
Confidence            4468888888888888888887 777777899999999999999998877766666666666677778899999999998


Q ss_pred             HHHHHhhCCCcHH----------HHHHHHHHHHHHHHHHHhchhh
Q 014256          164 SEFALRLEPQNQE----------IKKQLAEVKSLYEKEVFQKASK  198 (428)
Q Consensus       164 ~~~al~l~P~~~~----------~~~~l~~a~~~~~~a~~~~~~~  198 (428)
                      ..-.+.-+-.+++          ..+.++++.-++++.+.++|..
T Consensus       380 a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~  424 (831)
T PRK15180        380 AEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET  424 (831)
T ss_pred             HHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence            8777755444444          4778888988999888887543

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=87.97  E-value=2.8  Score=40.07  Aligned_cols=64  Identities=19%  Similarity=0.093  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 014256          107 AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRL  170 (428)
Q Consensus       107 ~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l  170 (428)
                      ..++..++..+...++++.++..+++.+.++|-+-.+|.++-.+|...|+...|+..|++.-.+
T Consensus       153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            4567778889999999999999999999999999999999999999999999999999988764

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=87.93  E-value=2  Score=40.66  Aligned_cols=15  Identities=20%  Similarity=0.113  Sum_probs=4.9

Q ss_pred             hcCCCCHHHHHHHHH
Q 014256          135 NLDDRYIKAYSRRAT  149 (428)
Q Consensus       135 ~l~p~~~~a~~~lg~  149 (428)
                      .+.|++...|+.+|.
T Consensus        10 ~l~P~~G~p~nQLAv   24 (278)
T PF10373_consen   10 RLLPSNGNPYNQLAV   24 (278)
T ss_dssp             HH-TTBSHHHHHHHH
T ss_pred             HhCCCCCCcccchhh
Confidence            333333333333333

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=87.74  E-value=1.7  Score=27.75  Aligned_cols=16  Identities=25%  Similarity=0.513  Sum_probs=5.5

Q ss_pred             HHHHHHhcCHHHHHHH
Q 014256           81 GNECFKQKKFKEAIDC   96 (428)
Q Consensus        81 g~~~~~~g~~~~Ai~~   96 (428)
                      |..+..+|+|++|+..
T Consensus         8 a~~~y~~~ky~~A~~~   23 (36)
T PF07720_consen    8 AYNFYQKGKYDEAIHF   23 (36)
T ss_dssp             HHHHHHTT-HHHHHHH
T ss_pred             HHHHHHHhhHHHHHHH
Confidence            3333333333333333

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=87.72  E-value=27  Score=34.87  Aligned_cols=102  Identities=16%  Similarity=0.009  Sum_probs=69.8

Q ss_pred             hhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHcc--------------CC-------------c---HHHHHH
Q 014256           63 SSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIAL--------------SP-------------T---AVAYAN  112 (428)
Q Consensus        63 ~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~--------------~p-------------~---~~~~~n  112 (428)
                      ..+..+|-+.++  +..++.++..+|+++.|.+..++|+-.              ++             +   ..+.+.
T Consensus        31 ~ll~~~PyHidt--Llqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r  108 (360)
T PF04910_consen   31 NLLQKNPYHIDT--LLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFR  108 (360)
T ss_pred             HHHHHCCCcHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHH
Confidence            445667776666  779999999999999999988888532              10             0   133455


Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHhcCCC-CHHH-HHHHHHHHHHcCCHHHHHHHHHH
Q 014256          113 RAMAYLKLRRFQEAEDDCTEALNLDDR-YIKA-YSRRATARKELGKLKESIEDSEF  166 (428)
Q Consensus       113 la~~~~~~~~~~eA~~~~~~al~l~p~-~~~a-~~~lg~~~~~lg~~~eA~~~~~~  166 (428)
                      ......+.|-+.-|.+.|+-.+.+||. |+-+ .+.+-..-.+.++|+--+..++.
T Consensus       109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~  164 (360)
T PF04910_consen  109 YIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSES  164 (360)
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHh
Confidence            667778889999999999999999998 6644 33333333445666544444444

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=87.14  E-value=2.1  Score=40.47  Aligned_cols=61  Identities=16%  Similarity=0.082  Sum_probs=52.9

Q ss_pred             HHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 014256           93 AIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKE  153 (428)
Q Consensus        93 Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~  153 (428)
                      |..+|.+|+.+.|+ ...|+.+|..+...|+.-.|+-.|-+++-..--.+.|.-++...+..
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            78999999999999 89999999999999999999999999998877778889999888877

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=86.92  E-value=12  Score=36.74  Aligned_cols=117  Identities=9%  Similarity=-0.020  Sum_probs=84.5

Q ss_pred             CcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHH---HhcCHHHHHHH
Q 014256           54 NYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYL---KLRRFQEAEDD  129 (428)
Q Consensus        54 ~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~---~~~~~~eA~~~  129 (428)
                      .+..+..|++||+.+|+....  +..+=..+.+..+-+.....+++++..+|+ ..+|..+-....   ..-.+......
T Consensus        47 ~E~klsilerAL~~np~~~~L--~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~  124 (321)
T PF08424_consen   47 AERKLSILERALKHNPDSERL--LLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDV  124 (321)
T ss_pred             HHHHHHHHHHHHHhCCCCHHH--HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence            456688999999999977655  334444555666888888999999999998 666654433222   23356777777


Q ss_pred             HHHHHhcCC------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 014256          130 CTEALNLDD------------------RYIKAYSRRATARKELGKLKESIEDSEFALRLEP  172 (428)
Q Consensus       130 ~~~al~l~p------------------~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P  172 (428)
                      |.+++..-.                  .....+.+++......|..+.|+..++..++++=
T Consensus       125 y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~  185 (321)
T PF08424_consen  125 YEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF  185 (321)
T ss_pred             HHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence            777764311                  1245678888888999999999999999999873

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.66  E-value=16  Score=37.47  Aligned_cols=123  Identities=15%  Similarity=0.042  Sum_probs=88.8

Q ss_pred             cCCCCcchHHHHHhhhhcCCC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc--------HHHHHHHHHHHHHh
Q 014256           50 SYSRNYDPVSHISSSLMNEES-TPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT--------AVAYANRAMAYLKL  120 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~-~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~--------~~~~~nla~~~~~~  120 (428)
                      ..|-++.|...|..+.+.-.. +..+.+-.++|..|.+.|+-+.--+..+..-..+..        +.+++..|...+++
T Consensus       379 sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~q  458 (629)
T KOG2300|consen  379 SVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQ  458 (629)
T ss_pred             hcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHh
Confidence            678899999999999887532 233444568899999988755444333332222211        45688899999999


Q ss_pred             cCHHHHHHHHHHHHhcCCC-C-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 014256          121 RRFQEAEDDCTEALNLDDR-Y-----IKAYSRRATARKELGKLKESIEDSEFALRLEP  172 (428)
Q Consensus       121 ~~~~eA~~~~~~al~l~p~-~-----~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P  172 (428)
                      +++.||.....+.++.... +     .-.+..+|.+..-+|+..++.+..+-++.+..
T Consensus       459 n~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAk  516 (629)
T KOG2300|consen  459 NDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAK  516 (629)
T ss_pred             ccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHh
Confidence            9999999999999987621 1     22355567888889999999998888887763

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=86.42  E-value=2.6  Score=26.85  Aligned_cols=29  Identities=17%  Similarity=0.136  Sum_probs=13.6

Q ss_pred             HHHHHHHHHHhcCHHHHHHH--HHHHHhcCC
Q 014256          110 YANRAMAYLKLRRFQEAEDD--CTEALNLDD  138 (428)
Q Consensus       110 ~~nla~~~~~~~~~~eA~~~--~~~al~l~p  138 (428)
                      ++.+|..+..+|+|++|+..  |.-+..+++
T Consensus         4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~   34 (36)
T PF07720_consen    4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDK   34 (36)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence            44445555555555555555  224444444

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=86.39  E-value=0.9  Score=26.46  Aligned_cols=18  Identities=33%  Similarity=0.123  Sum_probs=7.4

Q ss_pred             HHHHHHHHHhcCHHHHHH
Q 014256          111 ANRAMAYLKLRRFQEAED  128 (428)
Q Consensus       111 ~nla~~~~~~~~~~eA~~  128 (428)
                      +++|.++..+|++++|..
T Consensus         5 ~~la~~~~~~G~~~eA~~   22 (26)
T PF07721_consen    5 LALARALLAQGDPDEAER   22 (26)
T ss_pred             HHHHHHHHHcCCHHHHHH
Confidence            334444444444444433

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=86.26  E-value=14  Score=38.78  Aligned_cols=111  Identities=8%  Similarity=-0.050  Sum_probs=88.6

Q ss_pred             cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccC-Cc-HHHHHHHHHHHHHhcCHHHHH
Q 014256           50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALS-PT-AVAYANRAMAYLKLRRFQEAE  127 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~-p~-~~~~~nla~~~~~~~~~~eA~  127 (428)
                      ..|+++.....|++++-......+.  |...+.-....|+..-|-..+.++.++. |. +.....-+..--..|++..|.
T Consensus       309 ~~g~~~~~~~l~ercli~cA~Y~ef--Wiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~  386 (577)
T KOG1258|consen  309 TLGDFSRVFILFERCLIPCALYDEF--WIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAK  386 (577)
T ss_pred             hcccHHHHHHHHHHHHhHHhhhHHH--HHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHH
Confidence            6788888888888887766555555  6677777777788888888888888876 44 666666677777788999999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 014256          128 DDCTEALNLDDRYIKAYSRRATARKELGKLKESIE  162 (428)
Q Consensus       128 ~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~  162 (428)
                      ..+++...--|....+-.+......++|+.+.+..
T Consensus       387 ~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~  421 (577)
T KOG1258|consen  387 VILQRIESEYPGLVEVVLRKINWERRKGNLEDANY  421 (577)
T ss_pred             HHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhH
Confidence            99999888778888888888888888888887774

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=86.16  E-value=4.6  Score=40.22  Aligned_cols=93  Identities=17%  Similarity=0.167  Sum_probs=70.2

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHccCCc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC--------CCHHH
Q 014256           76 SEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD--------RYIKA  143 (428)
Q Consensus        76 ~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p--------~~~~a  143 (428)
                      .+.++|.-|..-|+++.|+.+|.++-.....    ...|.|+-.+-.-+|+|..-...-.+|...-.        -.+++
T Consensus       152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl  231 (466)
T KOG0686|consen  152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL  231 (466)
T ss_pred             HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence            3778999999999999999999997766654    45678888888888988887777777665410        11345


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Q 014256          144 YSRRATARKELGKLKESIEDSEFAL  168 (428)
Q Consensus       144 ~~~lg~~~~~lg~~~eA~~~~~~al  168 (428)
                      ...-|.+...+++|..|..+|-.+.
T Consensus       232 ~C~agLa~L~lkkyk~aa~~fL~~~  256 (466)
T KOG0686|consen  232 KCAAGLANLLLKKYKSAAKYFLLAE  256 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            6667788888889999988876554

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=86.01  E-value=3.8  Score=35.19  Aligned_cols=71  Identities=10%  Similarity=0.013  Sum_probs=60.0

Q ss_pred             cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcC
Q 014256           50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRR  122 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~  122 (428)
                      ..++.+++...+.-.--+.|+......  --|..++..|+|.+|+..++...+-.+. +..-..++.|+.-+|+
T Consensus        22 ~~~d~~D~e~lLdALrvLrP~~~e~d~--~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D   93 (153)
T TIGR02561        22 RSADPYDAQAMLDALRVLRPNLKELDM--FDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD   93 (153)
T ss_pred             hcCCHHHHHHHHHHHHHhCCCccccch--hHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence            467888888888888888899888744  7899999999999999999999887777 6666778888888876

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=85.47  E-value=23  Score=35.49  Aligned_cols=149  Identities=15%  Similarity=0.086  Sum_probs=101.0

Q ss_pred             ccChhhhhcCCCccccCCCCc-chHHHHHhhhhcCCCCchHHHHHHHHH----------HHHHhcCHHHHHHHHHHHHcc
Q 014256           35 SSSLKSAKKPSPSGNSYSRNY-DPVSHISSSLMNEESTPDATSEKELGN----------ECFKQKKFKEAIDCYSRSIAL  103 (428)
Q Consensus        35 ~~~~~~a~~~~~~~y~~g~~~-~Ai~~~~~al~~~p~~~~a~~~~~lg~----------~~~~~g~~~~Ai~~y~~al~~  103 (428)
                      .+.+..+...+...-..|.|+ +++..=.+.+..+|....+..+.....          -..+..-+++-+.+...++..
T Consensus        25 ~~~~~~~~s~i~~~r~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~  104 (421)
T KOG0529|consen   25 AGQLRSLFSIIQKKREAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKV  104 (421)
T ss_pred             HHHHHHHHHHHHHHHhccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHh
Confidence            344444444444444445544 577777888888888765533221111          122223466778888999999


Q ss_pred             CCc-HHHHHHHHHHHHHhcC--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC----HHHHHHHHHHHHhhCCCcHH
Q 014256          104 SPT-AVAYANRAMAYLKLRR--FQEAEDDCTEALNLDDRYIKAYSRRATARKELGK----LKESIEDSEFALRLEPQNQE  176 (428)
Q Consensus       104 ~p~-~~~~~nla~~~~~~~~--~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~----~~eA~~~~~~al~l~P~~~~  176 (428)
                      +|+ ..+|+.|..++.+.+.  +..=++.|+++++.||.+..+|..+-.+......    ..+=+++..+++.-++.|-.
T Consensus       105 npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYs  184 (421)
T KOG0529|consen  105 NPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYS  184 (421)
T ss_pred             CchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhh
Confidence            999 8899999999998874  6888999999999999998887666555544332    45667777888877887777


Q ss_pred             HHHHHHH
Q 014256          177 IKKQLAE  183 (428)
Q Consensus       177 ~~~~l~~  183 (428)
                      ++.....
T Consensus       185 aWhyRs~  191 (421)
T KOG0529|consen  185 AWHYRSL  191 (421)
T ss_pred             HHHHHHH
Confidence            6544333

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=85.24  E-value=4  Score=41.16  Aligned_cols=95  Identities=21%  Similarity=0.222  Sum_probs=59.2

Q ss_pred             HHHHHHHHhcCHHHHHHHHHHH-------HccCCc--HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 014256           79 ELGNECFKQKKFKEAIDCYSRS-------IALSPT--AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRAT  149 (428)
Q Consensus        79 ~lg~~~~~~g~~~~Ai~~y~~a-------l~~~p~--~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~  149 (428)
                      .+..++.-.|||..|++.....       ....|.  ..+++..|.||+.+++|.+|++.|...+-.--.....++....
T Consensus       127 gLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~~~~~~~  206 (404)
T PF10255_consen  127 GLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQYHQRSY  206 (404)
T ss_pred             HHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccc
Confidence            4456677789999999987653       111222  4568889999999999999999999887322111111111111


Q ss_pred             HHHH-cCCHHHHHHHHHHHHhhCCC
Q 014256          150 ARKE-LGKLKESIEDSEFALRLEPQ  173 (428)
Q Consensus       150 ~~~~-lg~~~eA~~~~~~al~l~P~  173 (428)
                      -+-. .+..++....+.-++.+.|.
T Consensus       207 q~d~i~K~~eqMyaLlAic~~l~p~  231 (404)
T PF10255_consen  207 QYDQINKKNEQMYALLAICLSLCPQ  231 (404)
T ss_pred             hhhHHHhHHHHHHHHHHHHHHhCCC
Confidence            1111 23445666677777777775

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=84.32  E-value=7.5  Score=43.56  Aligned_cols=125  Identities=14%  Similarity=0.139  Sum_probs=90.5

Q ss_pred             cCCCCcchHHHHHhhhhcCCCCchH-HHHHHHHHHHHHh-------cCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHh
Q 014256           50 SYSRNYDPVSHISSSLMNEESTPDA-TSEKELGNECFKQ-------KKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKL  120 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~~~~a-~~~~~lg~~~~~~-------g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~  120 (428)
                      ..+.|+.|+..|++.-..-|.-.+. .+.+..|..+..+       ..+.+|+..|++.-. .|. +--|...|.+|..+
T Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  565 (932)
T PRK13184        487 AEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAPLEYLGKALVYQRL  565 (932)
T ss_pred             hhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCchHHHhHHHHHHHh
Confidence            6678899999999988777764432 2366778777663       258888888887543 344 66799999999999


Q ss_pred             cCHHHHHHHHHHHHhcCCCCHHHH-------HHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH
Q 014256          121 RRFQEAEDDCTEALNLDDRYIKAY-------SRRATARKELGKLKESIEDSEFALRLEPQNQEI  177 (428)
Q Consensus       121 ~~~~eA~~~~~~al~l~p~~~~a~-------~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~  177 (428)
                      |+|++-++++.-|++..|.++..-       +|+-.+...  +-..|....--++.+.|.....
T Consensus       566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  627 (932)
T PRK13184        566 GEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYK--HRREALVFMLLALWIAPEKISS  627 (932)
T ss_pred             hhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhCcccccc
Confidence            999999999999999999987643       333333322  2346667777778888876544

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=84.14  E-value=7.4  Score=29.59  Aligned_cols=61  Identities=16%  Similarity=0.138  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHH---HHHHHcCCHHHHHHHHHHHHhh
Q 014256          110 YANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRA---TARKELGKLKESIEDSEFALRL  170 (428)
Q Consensus       110 ~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg---~~~~~lg~~~eA~~~~~~al~l  170 (428)
                      ....|.=++..++.++|+..++++++..++....+..+|   .+|...|+|.+++.+...-+.+
T Consensus         9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~   72 (80)
T PF10579_consen    9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI   72 (80)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445666677889999999999999999888776555554   6788889999888776555443

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=83.86  E-value=5.7  Score=39.63  Aligned_cols=151  Identities=17%  Similarity=0.086  Sum_probs=95.9

Q ss_pred             hhhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCc-hHHHHHHHHHHHHHhcCHHHHHHHHHHHHcc----C---Cc--H
Q 014256           39 KSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTP-DATSEKELGNECFKQKKFKEAIDCYSRSIAL----S---PT--A  107 (428)
Q Consensus        39 ~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~-~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~----~---p~--~  107 (428)
                      ..++..++..| .-|+++.|+..|.++-....... .+..+.++-.+-.-.|+|..-..+-.++...    .   +.  +
T Consensus       150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~  229 (466)
T KOG0686|consen  150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPA  229 (466)
T ss_pred             HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCc
Confidence            34667777777 78999999999999655543222 2334666667777789999888888877664    1   11  4


Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHh--------cCCCCHHHHHHHHH-HHHHcCCHH---HHHHHHHHHHhhCCCcH
Q 014256          108 VAYANRAMAYLKLRRFQEAEDDCTEALN--------LDDRYIKAYSRRAT-ARKELGKLK---ESIEDSEFALRLEPQNQ  175 (428)
Q Consensus       108 ~~~~nla~~~~~~~~~~eA~~~~~~al~--------l~p~~~~a~~~lg~-~~~~lg~~~---eA~~~~~~al~l~P~~~  175 (428)
                      .+...-|.+.+.+++|..|...+-.+..        +.|.+..+|..+.. +-....++.   ..-..|+..++++|.--
T Consensus       230 kl~C~agLa~L~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel~Pqlr  309 (466)
T KOG0686|consen  230 KLKCAAGLANLLLKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLELEPQLR  309 (466)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhcChHHH
Confidence            5667778889999999999988776643        23556666555432 111111222   22345777788888655


Q ss_pred             HH-----HHHHHHHHHHHH
Q 014256          176 EI-----KKQLAEVKSLYE  189 (428)
Q Consensus       176 ~~-----~~~l~~a~~~~~  189 (428)
                      +.     .+.+..+..+++
T Consensus       310 ~il~~fy~sky~~cl~~L~  328 (466)
T KOG0686|consen  310 EILFKFYSSKYASCLELLR  328 (466)
T ss_pred             HHHHHHhhhhHHHHHHHHH
Confidence            54     234555555544

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.72  E-value=5.4  Score=41.99  Aligned_cols=69  Identities=14%  Similarity=0.027  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHH
Q 014256          110 YANRAMAYLKLRRFQEAEDDCTEALNLDDRY------IKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK  178 (428)
Q Consensus       110 ~~nla~~~~~~~~~~eA~~~~~~al~l~p~~------~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~  178 (428)
                      .-|-|.-+++.++|..+++.|...+.--|++      .+..-+++.||..+.+.+.|.+++.+|-+.+|.++--+
T Consensus       357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q  431 (872)
T KOG4814|consen  357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQ  431 (872)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHH
Confidence            3456778889999999999999999877754      67788899999999999999999999999999887553

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=83.08  E-value=7.9  Score=39.27  Aligned_cols=57  Identities=16%  Similarity=0.173  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHccCCcHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 014256           77 EKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEA  133 (428)
Q Consensus        77 ~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~~~~~~nla~~~~~~~~~~eA~~~~~~a  133 (428)
                      ...-|.-++.+|+|.++..+-.=..++.|.+.+|.-+|+|.+..++|++|..++...
T Consensus       465 ~LaDAEyLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L  521 (549)
T PF07079_consen  465 FLADAEYLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQKL  521 (549)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence            444566788899999999998888999999999999999999999999998877643

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=82.94  E-value=5  Score=30.25  Aligned_cols=39  Identities=10%  Similarity=0.000  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhc
Q 014256          157 LKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQK  195 (428)
Q Consensus       157 ~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~~a~~~~  195 (428)
                      |++|++.+.+++...|+++....-...+.++.+++-.++
T Consensus        29 Y~~aIe~L~q~~~~~pD~~~k~~yr~ki~eY~~Rae~Lk   67 (75)
T cd02682          29 YKKAIEVLSQIVKNYPDSPTRLIYEQMINEYKRRIEVLE   67 (75)
T ss_pred             HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHH
Confidence            344555666677778887776555566666666655444

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=82.74  E-value=8  Score=41.46  Aligned_cols=109  Identities=17%  Similarity=0.044  Sum_probs=69.0

Q ss_pred             cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCcHHHHHHHHHHHHHhcCHHHHHHH
Q 014256           50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDD  129 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~~~~~~nla~~~~~~~~~~eA~~~  129 (428)
                      ..|+|+-|.+.|.++=.          .+..-..|-+.|+|.+|...-.++..-......|...|.-+-..|+|.+|++.
T Consensus       777 n~~dfe~ae~lf~e~~~----------~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeql  846 (1636)
T KOG3616|consen  777 NKGDFEIAEELFTEADL----------FKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQL  846 (1636)
T ss_pred             cchhHHHHHHHHHhcch----------hHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhhe
Confidence            56777777777666422          22334456677888888777666543222256677777777788888777665


Q ss_pred             HH------HHHhc-----------------CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 014256          130 CT------EALNL-----------------DDRY-IKAYSRRATARKELGKLKESIEDSEFAL  168 (428)
Q Consensus       130 ~~------~al~l-----------------~p~~-~~a~~~lg~~~~~lg~~~eA~~~~~~al  168 (428)
                      |-      +|+..                 .|+. ...+.++|.-+...|+.++|...|-++-
T Consensus       847 yiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~  909 (1636)
T KOG3616|consen  847 YITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG  909 (1636)
T ss_pred             eEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhh
Confidence            42      22221                 1221 3467778888888999998888776553

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=82.20  E-value=21  Score=35.85  Aligned_cols=126  Identities=13%  Similarity=0.041  Sum_probs=85.8

Q ss_pred             cCCCCcchHHHHHhhhhc----CCCC---chHHHHHHHHHHHHHhcCHHHHHHHHHHHHc---c--CCc--HHHHHHHHH
Q 014256           50 SYSRNYDPVSHISSSLMN----EEST---PDATSEKELGNECFKQKKFKEAIDCYSRSIA---L--SPT--AVAYANRAM  115 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~----~p~~---~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~---~--~p~--~~~~~nla~  115 (428)
                      ..+++.+|.+.-+..+..    +.+.   ..+..|+-+...|...|+...-...+...+.   +  +..  +...+-+-.
T Consensus       138 d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr  217 (493)
T KOG2581|consen  138 DQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLR  217 (493)
T ss_pred             hhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHH
Confidence            456666666655554432    1111   1344577777778778875555544444433   2  222  556666778


Q ss_pred             HHHHhcCHHHHHHHHHHHHhcC--C--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH
Q 014256          116 AYLKLRRFQEAEDDCTEALNLD--D--RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQ  175 (428)
Q Consensus       116 ~~~~~~~~~eA~~~~~~al~l~--p--~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~  175 (428)
                      +|+..+.|+.|.....++.--+  .  ..+..+|.+|.+..-.++|..|..+|-+|++..|.+.
T Consensus       218 ~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~  281 (493)
T KOG2581|consen  218 NYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA  281 (493)
T ss_pred             HHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence            9999999999999888775322  2  2355677889999999999999999999999999843

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=82.09  E-value=1.9  Score=25.06  Aligned_cols=24  Identities=21%  Similarity=-0.010  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHH
Q 014256          142 KAYSRRATARKELGKLKESIEDSE  165 (428)
Q Consensus       142 ~a~~~lg~~~~~lg~~~eA~~~~~  165 (428)
                      .+.+.+|.++...|++++|...++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            467899999999999999998875

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=81.53  E-value=73  Score=34.15  Aligned_cols=121  Identities=12%  Similarity=0.053  Sum_probs=84.8

Q ss_pred             chHHHHHhhhhcC-C-CCchHHHHHHHHHHHH-HhcCHHHHHHHHHHHHccC--Cc-----HHHHHHHHHHHHHhcCHHH
Q 014256           56 DPVSHISSSLMNE-E-STPDATSEKELGNECF-KQKKFKEAIDCYSRSIALS--PT-----AVAYANRAMAYLKLRRFQE  125 (428)
Q Consensus        56 ~Ai~~~~~al~~~-p-~~~~a~~~~~lg~~~~-~~g~~~~Ai~~y~~al~~~--p~-----~~~~~nla~~~~~~~~~~e  125 (428)
                      -|+.+++-++... + ...++...+.+|.+++ ...+++.|..++++++.+.  ++     ..+.+-++.++.+.+... 
T Consensus        39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-  117 (608)
T PF10345_consen   39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-  117 (608)
T ss_pred             HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-
Confidence            4688888887422 1 2346777889999998 5689999999999998876  33     234455688888887766 


Q ss_pred             HHHHHHHHHhcCCC----CHHHHHHHHH--HHHHcCCHHHHHHHHHHHHhhC--CCcHHH
Q 014256          126 AEDDCTEALNLDDR----YIKAYSRRAT--ARKELGKLKESIEDSEFALRLE--PQNQEI  177 (428)
Q Consensus       126 A~~~~~~al~l~p~----~~~a~~~lg~--~~~~lg~~~eA~~~~~~al~l~--P~~~~~  177 (428)
                      |...+++++..-..    .....+++-.  .....+++..|++.++....+.  .+++.+
T Consensus       118 a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~  177 (608)
T PF10345_consen  118 ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAV  177 (608)
T ss_pred             HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHH
Confidence            99999999977554    2333333332  2222379999999999998876  355544

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=81.39  E-value=21  Score=37.17  Aligned_cols=71  Identities=15%  Similarity=0.166  Sum_probs=61.3

Q ss_pred             HhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 014256           62 SSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALN  135 (428)
Q Consensus        62 ~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~  135 (428)
                      ++-++.+|.+..+  |+.+-.-+-.+ .++++.+.|++.+...|. +.+|......-+..++|+..+..|.+|+.
T Consensus        10 ~~rie~nP~di~s--w~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLv   81 (656)
T KOG1914|consen   10 RERIEENPYDIDS--WSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLV   81 (656)
T ss_pred             HHHHhcCCccHHH--HHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            5667888887776  77777766555 999999999999999999 88999889999999999999999999985

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=81.22  E-value=9  Score=34.69  Aligned_cols=69  Identities=17%  Similarity=0.137  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHccCCc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHcCCHHHHH
Q 014256           91 KEAIDCYSRSIALSPT---AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDR----YIKAYSRRATARKELGKLKESI  161 (428)
Q Consensus        91 ~~Ai~~y~~al~~~p~---~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~----~~~a~~~lg~~~~~lg~~~eA~  161 (428)
                      +.|...|-++-. .|.   +...+.+|..|. ..+.+.|+..+-+++.+.+.    ++..+..++.++..+|+++.|.
T Consensus       123 ~~A~~~fL~~E~-~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY  198 (203)
T PF11207_consen  123 QEALRRFLQLEG-TPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY  198 (203)
T ss_pred             HHHHHHHHHHcC-CCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence            556666555432 232   667777776665 55778888888888877543    4778888888888888888775

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=80.94  E-value=6.1  Score=37.81  Aligned_cols=57  Identities=25%  Similarity=0.146  Sum_probs=48.4

Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 014256          111 ANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFA  167 (428)
Q Consensus       111 ~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a  167 (428)
                      .-.+..|+..|.+.+|++.+.+++.+||-+...+..+-..+..+|+--.|...|++.
T Consensus       283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery  339 (361)
T COG3947         283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY  339 (361)
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence            334678899999999999999999999999999999999999999877777666553

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=80.47  E-value=12  Score=28.16  Aligned_cols=27  Identities=19%  Similarity=0.174  Sum_probs=19.7

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHc
Q 014256           76 SEKELGNECFKQKKFKEAIDCYSRSIA  102 (428)
Q Consensus        76 ~~~~lg~~~~~~g~~~~Ai~~y~~al~  102 (428)
                      .+...+..+-+.|+|.+|+.+|+++++
T Consensus         8 ~~a~~AVe~D~~gr~~eAi~~Y~~aIe   34 (75)
T cd02682           8 KYAINAVKAEKEGNAEDAITNYKKAIE   34 (75)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            355677777788888888888766554

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=80.41  E-value=3  Score=40.14  Aligned_cols=84  Identities=11%  Similarity=0.176  Sum_probs=66.8

Q ss_pred             HHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHH-HHHHHHHhcCHHHHHHHHHHHHhcCC
Q 014256           61 ISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYAN-RAMAYLKLRRFQEAEDDCTEALNLDD  138 (428)
Q Consensus        61 ~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~n-la~~~~~~~~~~eA~~~~~~al~l~p  138 (428)
                      |.++-..-+++...  |...++-..+.|-|.+--..|.+++..+|. ...|.. .+.-+...++++.+...+.++++++|
T Consensus        96 ~~R~tnkff~D~k~--w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~  173 (435)
T COG5191          96 LYRSTNKFFNDPKI--WSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNS  173 (435)
T ss_pred             eehhhhcCCCCcHH--HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCC
Confidence            33444444555555  667777777888999999999999999998 777765 45667788999999999999999999


Q ss_pred             CCHHHHHH
Q 014256          139 RYIKAYSR  146 (428)
Q Consensus       139 ~~~~a~~~  146 (428)
                      +++..|+-
T Consensus       174 ~~p~iw~e  181 (435)
T COG5191         174 RSPRIWIE  181 (435)
T ss_pred             CCchHHHH
Confidence            99987653

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=80.18  E-value=7.8  Score=37.05  Aligned_cols=60  Identities=22%  Similarity=0.183  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 014256           77 EKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNL  136 (428)
Q Consensus        77 ~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l  136 (428)
                      +..++..+...|+++.+++.+++.+..+|. ...|..+-..|+..|+...|+..|.+.-.+
T Consensus       156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         156 LTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            667888999999999999999999999998 888999999999999999999988876543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	428
1wao_1	477	Pp5 Structure Length = 477		7e-17
1a17_A	166	Tetratricopeptide Repeats Of Protein Phosphatase 5		3e-16
2bug_A	140	Solution Structure Of The Tpr Domain From Protein P		3e-15
2vyi_A	131	Crystal Structure Of The Tpr Domain Of Human Sgt Le		1e-12
3kd7_A	125	Designed Tpr Module (Ctpr390) In Complex With Its P		2e-12
4gco_A	126	Central Domain Of Stress-Induced Protein-1 (Sti-1)		2e-11
2dba_A	148	The Solution Structure Of The Tetratrico Peptide Re		3e-11
2c2l_A	281	Crystal Structure Of The Chip U-Box E3 Ubiquitin Li		3e-11
3q47_B	137	Crystal Structure Of Tpr Domain Of Chip Complexed W		3e-11
2lni_A	133	Solution Nmr Structure Of Stress-Induced-Phosphopro		6e-10
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		1e-09
1elw_A	118	Crystal Structure Of The Tpr1 Domain Of Hop In Comp		3e-09
2wqh_A	125	Crystal Structure Of Ctpr3y3 Length = 125		5e-08
2fo7_A	136	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		6e-08
3sz7_A	164	Crystal Structure Of The Sgt2 Tpr Domain From Asper		3e-07
3uq3_A	258	Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1 Length =		7e-07
2if4_A	338	Crystal Structure Of A Multi-Domain Immunophilin Fr		1e-06
3rkv_A	162	C-Terminal Domain Of Protein C56c10.10, A Putative		1e-06
2gw1_A	514	Crystal Structure Of The Yeast Tom70 Length = 514		1e-06
3upv_A	126	Tpr2b-Domain:phsp70-Complex Of Yeast Sti1 Length =		2e-06
1p5q_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Lengt		3e-06
2l6j_A	111	Tah1 Complexed By Meevd Length = 111		7e-06
1qz2_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Compl		9e-06
1ihg_A	370	Bovine Cyclophilin 40, Monoclinic Form Length = 370		1e-05
1kt0_A	457	Structure Of The Large Fkbp-like Protein, Fkbp51, I		1e-05
1w3b_A	388	The Superhelical Tpr Domain Of O-Linked Glcnac Tran		1e-05
3fp2_A	537	Crystal Structure Of Tom71 Complexed With Hsp82 C-T		1e-05
1kt1_A	457	Structure Of The Large Fkbp-Like Protein, Fkbp51, I		2e-05
3lca_A	533	Structure Of Tom71 Complexed With Hsp70 Ssa1 C Term		2e-05
4gcn_A	127	N-Terminal Domain Of Stress-Induced Protein-1 (Sti-		5e-05
1na3_A	91	Design Of Stable Alpha-Helical Arrays From An Ideal		3e-04
2avp_A	70	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		6e-04

>pdb|1WAO|1 Chain 1, Pp5 Structure Length = 477

Iteration: 1
 Score = 85.1 bits (209), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 74/120 (61%), Gaps = 1/120 (0%)
Query: 78  KELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNL 136
           K   N+ FK K ++ AI  YS++I L+P+ A+ Y NR++AYL+   +  A  D T A+ L
Sbjct: 10  KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL 69
Query: 137 DDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKA 196
           D +YIK Y RRA +   LGK + ++ D E  ++++P +++ K +  E   + +++ F++A
Sbjct: 70  DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERA 129

>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5 Length = 166

Iteration: 1
 Score = 83.2 bits (204), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 74/120 (61%), Gaps = 1/120 (0%)
Query: 78  KELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNL 136
           K   N+ FK K ++ AI  YS++I L+P+ A+ Y NR++AYL+   +  A  D T A+ L
Sbjct: 17  KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL 76
Query: 137 DDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKA 196
           D +YIK Y RRA +   LGK + ++ D E  ++++P +++ K +  E   + +++ F++A
Sbjct: 77  DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERA 136

>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt Length = 131

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/124 (38%), Positives = 67/124 (54%), Gaps = 3/124 (2%)
Query: 65  LMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRF 123
           L +EE + +A   K  GNE  K + F+ A+  Y ++I L+P  AV + NRA AY KL  +
Sbjct: 3   LGSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNY 62
Query: 124 QEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQL-- 181
             A  DC  A+ +D  Y KAY R   A   L K  E++   + AL L+P N+  K  L  
Sbjct: 63  AGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKI 122
Query: 182 AEVK 185
           AE+K
Sbjct: 123 AELK 126

>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 64/113 (56%), Gaps = 1/113 (0%)
Query: 74  ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTE 132
           A + K LGN  +KQ  +++AI+ Y +++ L P  A A+ N   AY K   +Q+A +   +
Sbjct: 9   AEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQK 68
Query: 133 ALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVK 185
           AL LD    KA+ RR  A  + G  +++IED + AL L+P N + K+ L   K
Sbjct: 69  ALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLGNAK 121

>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From C.Elegans Length = 126

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/110 (37%), Positives = 62/110 (56%), Gaps = 7/110 (6%)
Query: 74  ATSEKELGNECFKQKKFKEAIDCYSRSIALSP-TAVAYANRAMAYLKLRRFQEAEDDCTE 132
           A  EK  GNE FK+  +  A+  Y+ ++   P  A+ Y+NRA    KL  FQ A DDC  
Sbjct: 13  AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDT 72
Query: 133 ALNLDDRYIKAYSRRA---TARKELGKLKESIEDSEFALRLEPQNQEIKK 179
            + LD ++IK Y R+A    A +E  K + + ED   AL+++P N+E ++
Sbjct: 73  CIRLDSKFIKGYIRKAACLVAMREWSKAQRAYED---ALQVDPSNEEARE 119

>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of Human Smooth Muscle Cell Associated Protein-1, Isoform 2 Length = 148

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 40/122 (32%), Positives = 73/122 (59%), Gaps = 7/122 (5%)
Query: 70  STPDATSEKEL---GNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRR 122
           +TP A+S ++L   GNE FK   +  A+  Y++++ L  T    AV + NRA  +LKL  
Sbjct: 21  ATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLED 80
Query: 123 FQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLA 182
           + +AE + ++A+  D   +KA  RR+ A ++LG+L +++ D +  + LEP+N+  ++ L 
Sbjct: 81  YDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALR 140
Query: 183 EV 184
            +
Sbjct: 141 NI 142

>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase Length = 281

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/101 (37%), Positives = 57/101 (56%), Gaps = 1/101 (0%)
Query: 71  TPDATSEKELGNECFKQKKFKEAIDCYSRSIALSP-TAVAYANRAMAYLKLRRFQEAEDD 129
           +P A   KE GN  F  +K+ EA  CY R+I  +P  AV Y NRA+ YLK+++ ++A  D
Sbjct: 1   SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALAD 60
Query: 130 CTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRL 170
           C  AL LD + +KA+      + E+    E+I + + A  L
Sbjct: 61  CRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSL 101

>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With Pseudophosphorylated Smad1 Peptide Length = 137

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/101 (37%), Positives = 57/101 (56%), Gaps = 1/101 (0%)
Query: 71  TPDATSEKELGNECFKQKKFKEAIDCYSRSIALSP-TAVAYANRAMAYLKLRRFQEAEDD 129
           +P A   KE GN  F  +K+ EA  CY R+I  +P  AV Y NRA+ YLK+++ ++A  D
Sbjct: 6   SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALAD 65
Query: 130 CTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRL 170
           C  AL LD + +KA+      + E+    E+I + + A  L
Sbjct: 66  CRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSL 106

>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1 Sti1 From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr4403e Length = 133

Iteration: 1
 Score = 62.0 bits (149), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 61/107 (57%), Gaps = 2/107 (1%)
Query: 72  PD-ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDD 129
           PD A   K  GNECF++  + +A+  Y+ +I  +P  A  Y+NRA  Y KL  FQ A  D
Sbjct: 13  PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKD 72
Query: 130 CTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 176
           C E + L+  +IK Y+R+A A + +    ++++  + AL L+   +E
Sbjct: 73  CEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKE 119

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 55/107 (51%), Gaps = 1/107 (0%)
Query: 80  LGNECFKQKKFKEAIDCYSRSIALSP-TAVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 138
           LGN  +KQ  + EAI+ Y +++ L P  A A+ N   AY K   + EA +   +AL LD 
Sbjct: 15  LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74
Query: 139 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVK 185
              +A+     A  + G   E+IE  + AL L+P N E K+ L   K
Sbjct: 75  NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 121

>pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex With A Hsc70 Peptide Length = 118

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 61/110 (55%), Gaps = 1/110 (0%)
Query: 78  KELGNECFKQKKFKEAIDCYSRSIALSP-TAVAYANRAMAYLKLRRFQEAEDDCTEALNL 136
           KE GN+        +A+ CYS +I L P   V Y+NR+ AY K   +Q+A +D  + ++L
Sbjct: 8   KEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL 67
Query: 137 DDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKS 186
              + K YSR+A A + L + +E+    E  L+ E  N ++K+ L  +++
Sbjct: 68  KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117

>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 53/107 (49%), Gaps = 1/107 (0%)
Query: 80  LGNECFKQKKFKEAIDCYSRSIALSP-TAVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 138
           LGN  +KQ  + EAI+ Y +++ L P  A A+ N   AY K   + EA +   +AL L  
Sbjct: 15  LGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYP 74
Query: 139 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVK 185
              +A+     A  + G   E+IE  + AL L P N E K+ L   K
Sbjct: 75  NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQNLGNAK 121

>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136

Iteration: 1
 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 55/104 (52%), Gaps = 1/104 (0%)
Query: 80  LGNECFKQKKFKEAIDCYSRSIALSP-TAVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 138
           LGN  +KQ  + EAI+ Y +++ L P +A A+ N   AY K   + EA +   +AL LD 
Sbjct: 7   LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 66
Query: 139 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLA 182
           R  +A+     A  + G   E+IE  + AL L+P++ E    L 
Sbjct: 67  RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLG 110

>pdb|3SZ7|A Chain A, Crystal Structure Of The Sgt2 Tpr Domain From Aspergillus Fumigatus Length = 164

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 57/102 (55%), Gaps = 1/102 (0%)
Query: 71  TPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAY-ANRAMAYLKLRRFQEAEDD 129
           TP++   K  GN    +K++ +AID Y+++++++P    Y +NRA AY    + ++A +D
Sbjct: 8   TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAED 67
Query: 130 CTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLE 171
              A  +D +Y KA+SR   AR ++   K + E  E  +  E
Sbjct: 68  AELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAE 109

>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1 Length = 258

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 72  PDATSEKEL-GNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDD 129
           P+   E  L G E F +  +  A+  Y+  I  +P  A  Y+NRA A  KL  F EA  D
Sbjct: 136 PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIAD 195
Query: 130 CTEALNLDDRYIKAYSRRATAR 151
           C +A+  D  +++AY R+ATA+
Sbjct: 196 CNKAIEKDPNFVRAYIRKATAQ 217

>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From Arabidopsis Thaliana Length = 338

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 71/151 (47%), Gaps = 22/151 (14%)
Query: 63  SSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIA------------------LS 104
           S +  EE    A   K  GN  FK++K +EA+  Y  +IA                  L+
Sbjct: 168 SDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALA 227
Query: 105 PTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDS 164
                + N A   +KL+R+ EA   C   L  +++  KA  RR  A+ ELG++  + +D 
Sbjct: 228 VKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDF 287
Query: 165 EFALRLEPQNQEIKKQL----AEVKSLYEKE 191
             A +  P ++ I+++L     + K+LY+K+
Sbjct: 288 RKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318

>pdb|3RKV|A Chain A, C-Terminal Domain Of Protein C56c10.10, A Putative Peptidylprolyl Isomerase, From Caenorhabditis Elegans Length = 162

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 50/111 (45%), Gaps = 19/111 (17%)
Query: 81  GNECFKQKKFKEAIDCYSRSIALSPTAVA-------------------YANRAMAYLKLR 121
           GNE F QK +KEAID Y  ++    T +                    YAN +  YL + 
Sbjct: 18  GNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIG 77
Query: 122 RFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEP 172
              EAE+  +E L  ++   KA  RRA AR    KL E+ ED +  LR  P
Sbjct: 78  DLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHP 128

>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70 Length = 514

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 70/132 (53%), Gaps = 7/132 (5%)
Query: 74  ATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEA 133
           A + K+ GN+ F+ KK+ +AI  Y+ ++ L    V Y+N +  Y+ +   ++  +  T+A
Sbjct: 6   ALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKA 65
Query: 134 LNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVF 193
           L L   Y K   RRA+A + LGK      D+ F L +   N +     A ++ + E+ + 
Sbjct: 66  LELKPDYSKVLLRRASANEGLGKFA----DAMFDLSVLSLNGDFND--ASIEPMLERNLN 119
Query: 194 QKA-SKTLEKYG 204
           ++A SK  EK+G
Sbjct: 120 KQAMSKLKEKFG 131

>pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1 Length = 126

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 81  GNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDR 139
           G E F +  +  A+  Y+  I  +P  A  Y+NRA A  KL  F EA  DC +A+  D  
Sbjct: 11  GKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN 70
Query: 140 YIKAYSRRATARKELGKLKESIE 162
           +++AY R+ATA+  + +   ++E
Sbjct: 71  FVRAYIRKATAQIAVKEYASALE 93

>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Length = 336

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 66/149 (44%), Gaps = 27/149 (18%)
Query: 67  NEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANR------------- 113
           +EE    +T  KE G   FK+ K+K+A+  Y + ++      +++N              
Sbjct: 140 SEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASH 199
Query: 114 ---AMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRL 170
              AM +LKL+ F  A + C +AL LD    K  SRR  A   +   + +  D +  L+L
Sbjct: 200 LNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 259
Query: 171 EPQN-----------QEIKKQLAEVKSLY 188
            P N           Q I++QLA  K LY
Sbjct: 260 YPNNKAAKTQLAVCQQRIRRQLAREKKLY 288

>pdb|2L6J|A Chain A, Tah1 Complexed By Meevd Length = 111

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 77  EKELGNECFKQKKFKEAIDCYSRSIALSP-TAVAYANRAMAYLKLRRFQEAEDDCTEAL 134
           +KE GN  FKQ  ++EA+ CY + I   P   V Y+N+AMA +KL  + +A   C + L
Sbjct: 7   QKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGL 65

>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With The C-Terminal Peptide Meevd Of Hsp90 Length = 336

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 67/154 (43%), Gaps = 27/154 (17%)
Query: 62  SSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANR-------- 113
           S  + +EE    +T  KE G   FK+ K+K+A+  Y + ++      +++N         
Sbjct: 135 SWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQAL 194
Query: 114 --------AMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSE 165
                   AM +LKL+ F  A + C +AL LD    K   RR  A   +   + +  D +
Sbjct: 195 RLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFELARADFQ 254
Query: 166 FALRLEPQN-----------QEIKKQLAEVKSLY 188
             L+L P N           Q I++QLA  K LY
Sbjct: 255 KVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLY 288

>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form Length = 370

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 60/125 (48%), Gaps = 17/125 (13%)
Query: 78  KELGNECFKQKKFKEAIDCYSRSI----------------ALSPTAVAYA-NRAMAYLKL 120
           K +GN  FK + ++ AI  Y++ +                 L P A++   N     LK+
Sbjct: 227 KNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKM 286
Query: 121 RRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQ 180
             +Q A D C EAL +D    KA  RRA   + L +  +++ D + A  + P+++ I+ +
Sbjct: 287 SDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAE 346
Query: 181 LAEVK 185
           L +VK
Sbjct: 347 LLKVK 351

>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 56/121 (46%), Gaps = 16/121 (13%)
Query: 78  KELGNECFKQKKFKEAIDCYSRSIAL----------------SPTAVAYANRAMAYLKLR 121
           KE G   FK  K+ +A+  Y + ++                 S    A+ N AM YLKLR
Sbjct: 272 KEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLR 331
Query: 122 RFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQL 181
            + +A + C +AL LD    K   RR  A+  + + + +  D E  L + PQN+  + Q+
Sbjct: 332 EYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQI 391
Query: 182 A 182
           +
Sbjct: 392 S 392

>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. Length = 388

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 1/107 (0%)
Query: 80  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 138
           LGN   + + F  A+  Y R+++LSP  AV + N A  Y +      A D    A+ L  
Sbjct: 209 LGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP 268
Query: 139 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVK 185
            +  AY   A A KE G + E+ +    ALRL P + +    LA +K
Sbjct: 269 HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIK 315

>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal Fragment Length = 537

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 74  ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTE 132
           A   K  GN  F  K F EAI  Y  +I L P   V Y+N +  Y+     ++  +  T+
Sbjct: 25  AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTK 84
Query: 133 ALNLDDRYIKAYSRRATARKELGKLKESIED 163
           AL +   + KA  RRA+A + LG   +++ D
Sbjct: 85  ALEIKPDHSKALLRRASANESLGNFTDAMFD 115

>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 55/120 (45%), Gaps = 16/120 (13%)
Query: 78  KELGNECFKQKKFKEAIDCYSRSIAL----------------SPTAVAYANRAMAYLKLR 121
           KE G   FK  K+ +A+  Y + ++                 S    A+ N AM YLKLR
Sbjct: 272 KEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLR 331
Query: 122 RFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQL 181
            + +A + C +AL LD    K   RR  A+  + + + +  D E  L + PQN+  + Q+
Sbjct: 332 EYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQI 391

>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal Tail Indicating Conformational Plasticity Length = 533

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 74  ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTE 132
           A   K  GN  F  K F EAI  Y  +I L P   V Y+N +  Y+     ++  +  T+
Sbjct: 21  AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTK 80
Query: 133 ALNLDDRYIKAYSRRATARKELGKLKESIED 163
           AL +   + KA  RRA+A + LG   +++ D
Sbjct: 81  ALEIKPDHSKALLRRASANESLGNFTDAMFD 111

>pdb|4GCN|A Chain A, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1) From C.Elegans Length = 127

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 71  TPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVA-YANRAMAYLKLRRFQEAEDD 129
           T  A +EK+LGN  +KQK F++A   Y ++I L P+ +  Y N+A  Y + ++F E    
Sbjct: 5   TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQF 64
Query: 130 CTEALNL 136
           C +A+ +
Sbjct: 65  CEKAVEV 71

>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 91

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 8/81 (9%)
Query: 80  LGNECFKQKKFKEAIDCYSRSIALSP-TAVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 138
           LGN  +KQ  + EAI+ Y +++ L P  A A+ N   AY K   + EA +   +AL LD 
Sbjct: 15  LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD- 73
Query: 139 RYIKAYSRRATARKELGKLKE 159
                    A A++ LG  K+
Sbjct: 74  ------PNNAEAKQNLGNAKQ 88

>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix Length = 70

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 80  LGNECFKQKKFKEAIDCYSRSIALSP-TAVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 138
           LGN  +KQ  + EAI+ Y +++ L P +A A+ N   AY K   + EA +   +AL LD 
Sbjct: 9   LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 68
Query: 139 R 139
           R
Sbjct: 69  R 69

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	428
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	2e-45
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	3e-44
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	4e-43
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	4e-43
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	1e-42
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	2e-42
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	5e-41
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	1e-40
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	2e-40
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	3e-37
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	3e-34
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	4e-34
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	1e-33
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	1e-32
2l6j_A	111	TPR repeat-containing protein associated with HSP;	4e-32
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	4e-32
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	2e-30
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	3e-29
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	5e-25
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	4e-18
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	8e-16
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	7e-14
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-28
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-24
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-19
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-19
2gw1_A	514	Mitochondrial precursor proteins import receptor;	5e-19
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-09
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-27
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	5e-26
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-19
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-15
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-14
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-27
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	4e-24
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	7e-19
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-15
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-15
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	6e-15
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	4e-14
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	1e-26
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-23
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-22
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-20
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-17
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-17
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-14
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-07
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-06
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	3e-23
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	6e-22
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-20
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	8e-20
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	9e-20
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	9e-20
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-19
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-19
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	7e-19
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	8e-19
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	5e-17
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-13
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	6e-10
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	4e-20
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	5e-11
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	8e-20
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-19
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-19
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	5e-19
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	5e-14
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-12
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	2e-19
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	5e-19
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	2e-10
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	3e-19
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	4e-14
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	1e-10
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	7e-19
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	2e-18
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	2e-18
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	1e-10
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	5e-10
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	7e-19
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	3e-17
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	6e-16
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	8e-16
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	6e-09
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	1e-18
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	3e-15
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	8e-15
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	1e-13
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	5e-10
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	4e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-18
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-18
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	8e-18
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-17
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-17
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-17
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-17
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-16
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-16
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-16
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-12
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-06
3u4t_A	272	TPR repeat-containing protein; structural genomics	9e-18
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-17
3u4t_A	272	TPR repeat-containing protein; structural genomics	3e-17
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-16
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-15
3u4t_A	272	TPR repeat-containing protein; structural genomics	4e-09
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-07
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-17
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	8e-17
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	4e-16
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-13
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-10
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	3e-17
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	4e-07
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	1e-06
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	4e-17
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-15
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	3e-15
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-13
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-08
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	3e-08
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	1e-16
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	2e-16
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	2e-13
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	7e-09
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-16
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-16
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-15
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	9e-12
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-11
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-11
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	7e-11
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-07
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	9e-07
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	9e-07
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	3e-16
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-14
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	6e-14
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-12
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	4e-11
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	6e-10
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	5e-07
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	3e-16
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-15
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	6e-15
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	5e-11
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	7e-11
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	8e-16
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	9e-16
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-15
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-14
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-13
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-13
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	6e-13
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-12
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-12
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-11
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-10
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-10
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	5e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-04
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	1e-15
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	2e-14
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	3e-09
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	3e-05
2kat_A	115	Uncharacterized protein; NESG, structure, structur	2e-15
2kat_A	115	Uncharacterized protein; NESG, structure, structur	7e-09
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	2e-15
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	1e-11
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	3e-08
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	6e-15
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	2e-14
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	5e-13
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	1e-12
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	3e-11
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	6e-04
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	7e-15
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	7e-15
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	1e-13
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	4e-06
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	2e-13
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	4e-11
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	8e-13
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	2e-07
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	8e-13
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	3e-09
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	9e-09
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	1e-12
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-11
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-09
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	9e-09
3k9i_A	117	BH0479 protein; putative protein binding protein,	7e-12
3k9i_A	117	BH0479 protein; putative protein binding protein,	1e-06
3k9i_A	117	BH0479 protein; putative protein binding protein,	7e-05
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	8e-12
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	8e-11
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	8e-12
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	1e-11
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	9e-11
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	4e-10
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	5e-09
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	2e-11
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	2e-07
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	3e-07
4g1t_A	472	Interferon-induced protein with tetratricopeptide	4e-11
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-09
4g1t_A	472	Interferon-induced protein with tetratricopeptide	6e-09
4g1t_A	472	Interferon-induced protein with tetratricopeptide	3e-08
4g1t_A	472	Interferon-induced protein with tetratricopeptide	7e-08
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-07
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-06
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-06
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	2e-10
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	3e-09
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	3e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-09
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	2e-08
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	1e-06
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	3e-04
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	2e-08
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	3e-06
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	1e-05
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	1e-07
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	1e-07
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	2e-07
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	3e-06
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	1e-05
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	8e-05
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	2e-07
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	3e-06
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	2e-05
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	8e-04
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	2e-07
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	8e-07
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	3e-05
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	2e-05
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	4e-05
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	2e-05
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	7e-05
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	7e-04
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	3e-05
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	4e-05
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	3e-04
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	4e-04
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	2e-04

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score =  154 bits (391), Expect = 2e-45
 Identities = 44/137 (32%), Positives = 78/137 (56%), Gaps = 1/137 (0%)

Query: 68  EESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEA 126
           + +   A   K   N+ FK K ++ AI  YS++I L+P+ A+ Y NR++AYL+   +  A
Sbjct: 7   DGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYA 66

Query: 127 EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKS 186
             D T A+ LD +YIK Y RRA +   LGK + ++ D E  ++++P +++ K +  E   
Sbjct: 67  LGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNK 126

Query: 187 LYEKEVFQKASKTLEKY 203
           + +++ F++A    E  
Sbjct: 127 IVKQKAFERAIAGDEHK 143

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score =  149 bits (379), Expect = 3e-44
 Identities = 44/125 (35%), Positives = 64/125 (51%), Gaps = 1/125 (0%)

Query: 67  NEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQE 125
           +EE + +A   K  GNE  K + F+ A+  Y ++I L+P  AV + NRA AY KL  +  
Sbjct: 5   SEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAG 64

Query: 126 AEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVK 185
           A  DC  A+ +D  Y KAY R   A   L K  E++   + AL L+P N+  K  L   +
Sbjct: 65  AVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAE 124

Query: 186 SLYEK 190
               +
Sbjct: 125 LKLRE 129

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score =  146 bits (370), Expect = 4e-43
 Identities = 36/114 (31%), Positives = 61/114 (53%), Gaps = 1/114 (0%)

Query: 74  ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTE 132
               KE GN+        +A+ CYS +I L P   V Y+NR+ AY K   +Q+A +D  +
Sbjct: 4   VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCK 63

Query: 133 ALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKS 186
            ++L   + K YSR+A A + L + +E+    E  L+ E  N ++K+ L  +++
Sbjct: 64  TVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score =  146 bits (371), Expect = 4e-43
 Identities = 37/113 (32%), Positives = 60/113 (53%), Gaps = 1/113 (0%)

Query: 74  ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTE 132
           A  EK  GNE FK+  +  A+  Y+ ++   P  A+ Y+NRA    KL  FQ A DDC  
Sbjct: 13  AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDT 72

Query: 133 ALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVK 185
            + LD ++IK Y R+A     + +  ++    E AL+++P N+E ++ +    
Sbjct: 73  CIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score =  145 bits (368), Expect = 1e-42
 Identities = 36/113 (31%), Positives = 59/113 (52%), Gaps = 1/113 (0%)

Query: 74  ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTE 132
           A   K  GNECF++  + +A+  Y+ +I  +P  A  Y+NRA  Y KL  FQ A  DC E
Sbjct: 16  ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEE 75

Query: 133 ALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVK 185
            + L+  +IK Y+R+A A + +    ++++  + AL L+   +E         
Sbjct: 76  CIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCM 128

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score =  145 bits (369), Expect = 2e-42
 Identities = 35/123 (28%), Positives = 66/123 (53%), Gaps = 4/123 (3%)

Query: 68  EESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRF 123
                     ++ GNE FK   +  A+  Y++++ L  T    AV + NRA  +LKL  +
Sbjct: 22  TPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDY 81

Query: 124 QEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAE 183
            +AE + ++A+  D   +KA  RR+ A ++LG+L +++ D +  + LEP+N+  ++ L  
Sbjct: 82  DKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRN 141

Query: 184 VKS 186
           +  
Sbjct: 142 ISG 144

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score =  142 bits (360), Expect = 5e-41
 Identities = 35/127 (27%), Positives = 64/127 (50%), Gaps = 3/127 (2%)

Query: 68  EESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEA 126
              TP++   K  GN    +K++ +AID Y+++++++P   +  +NRA AY    + ++A
Sbjct: 5   MAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKA 64

Query: 127 EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN--QEIKKQLAEV 184
            +D   A  +D +Y KA+SR   AR ++   K + E  E  +  E       +K+ L   
Sbjct: 65  AEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETT 124

Query: 185 KSLYEKE 191
           K   E+ 
Sbjct: 125 KRKIEEA 131

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score =  140 bits (354), Expect = 1e-40
 Identities = 36/123 (29%), Positives = 59/123 (47%), Gaps = 2/123 (1%)

Query: 74  ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTE 132
           A   +  G E F +  +  A+  Y+  I  +P  A  Y+NRA A  KL  F EA  DC +
Sbjct: 4   AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK 63

Query: 133 ALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEV 192
           A+  D  +++AY R+ATA+  + +   ++E  + A   + +         E+  LY K  
Sbjct: 64  AIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNN-GSSAREIDQLYYKAS 122

Query: 193 FQK 195
            Q+
Sbjct: 123 QQR 125

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score =  139 bits (353), Expect = 2e-40
 Identities = 41/134 (30%), Positives = 66/134 (49%), Gaps = 6/134 (4%)

Query: 68  EESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEA 126
              +P A   KE GN  F  +K+ EA  CY R+I  +P  AV Y NRA+ YLK+++ ++A
Sbjct: 3   HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQA 62

Query: 127 EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQ-----EIKKQL 181
             DC  AL LD + +KA+      + E+    E+I + + A  L  + +     +I   L
Sbjct: 63  LADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL 122

Query: 182 AEVKSLYEKEVFQK 195
              K      + ++
Sbjct: 123 RIAKKKRWNSIEER 136

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score =  136 bits (343), Expect = 3e-37
 Identities = 45/191 (23%), Positives = 77/191 (40%), Gaps = 6/191 (3%)

Query: 71  TPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDD 129
           +P A   KE GN  F  +K+ EA  CY R+I  +P  AV Y NRA+ YLK+++ ++A  D
Sbjct: 1   SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALAD 60

Query: 130 CTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE-----IKKQLAEV 184
           C  AL LD + +KA+      + E+    E+I + + A  L  + +      I   L   
Sbjct: 61  CRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA 120

Query: 185 KSLYEKEVFQKASKTLEKYGKSGMKVNGHEVRAVRNTIQKTGVAEIQDLTISKKTENKNL 244
           K      + ++      +      ++   E        Q+       D  I  +      
Sbjct: 121 KKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEA 180

Query: 245 RDESKTEGQRD 255
           + +       +
Sbjct: 181 KHDKYMADMDE 191

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score =  123 bits (311), Expect = 3e-34
 Identities = 34/127 (26%), Positives = 57/127 (44%), Gaps = 8/127 (6%)

Query: 73  DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCT 131
            A  EKELGN+ +K+K F  A+  Y ++  L PT      N+A  Y +   + +  + C 
Sbjct: 3   QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCE 62

Query: 132 EALNLD-------DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEV 184
           +A+ +         +  KAY+R   +  +  K K++I     +L        +KK     
Sbjct: 63  KAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAE 122

Query: 185 KSLYEKE 191
           K L E+E
Sbjct: 123 KILKEQE 129

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score =  122 bits (309), Expect = 4e-34
 Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 8/121 (6%)

Query: 67  NEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQE 125
           +   T  A +EK+LGN  +KQK F++A   Y ++I L P+    Y N+A  Y + ++F E
Sbjct: 1   SNAMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAE 60

Query: 126 AEDDCTEALNLD-------DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK 178
               C +A+ +            KA SR   A ++   L  +++    +L      + +K
Sbjct: 61  CVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVK 120

Query: 179 K 179
           K
Sbjct: 121 K 121

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score =  122 bits (308), Expect = 1e-33
 Identities = 42/158 (26%), Positives = 64/158 (40%), Gaps = 19/158 (12%)

Query: 64  SLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----------------- 106
           S   ++      + ++ GNE F QK +KEAID Y  ++    T                 
Sbjct: 1   SNAEDDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDR 60

Query: 107 --AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDS 164
                YAN +  YL +    EAE+  +E L  ++   KA  RRA AR    KL E+ ED 
Sbjct: 61  KNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDL 120

Query: 165 EFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKTLEK 202
           +  LR  P    +  +  ++ +    E    +  T  K
Sbjct: 121 KLLLRNHPAAASVVAREMKIVTERRAEKKADSRVTYSK 158

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score =  127 bits (321), Expect = 1e-32
 Identities = 44/129 (34%), Positives = 76/129 (58%), Gaps = 1/129 (0%)

Query: 74  ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTE 132
           A   K   N+ FK K ++ AI  YS++I L+P+ A+ Y NR++AYL+   +  A  D T 
Sbjct: 6   AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 65

Query: 133 ALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEV 192
           A+ LD +YIK Y RRA +   LGK + ++ D E  ++++P +++ K +  E   + +++ 
Sbjct: 66  AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA 125

Query: 193 FQKASKTLE 201
           F++A    E
Sbjct: 126 FERAIAGDE 134

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score =  117 bits (294), Expect = 4e-32
 Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 3/110 (2%)

Query: 72  PDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDC 130
                +KE GN  FKQ  ++EA+ CY + I   P   V Y+N+AMA +KL  + +A   C
Sbjct: 2   SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMC 61

Query: 131 TEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALR-LEPQNQEIKK 179
            + L           R     + L   + ++   +  +  ++   +   +
Sbjct: 62  QQGLRYTSTAEHVAIRSKLQYR-LELAQGAVGSVQIPVVEVDELPEGYDR 110

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score =  119 bits (301), Expect = 4e-32
 Identities = 36/152 (23%), Positives = 56/152 (36%), Gaps = 23/152 (15%)

Query: 67  NEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-----------------AVA 109
           +EE    A   KE GNE FK+ +  EAI  Y  ++                         
Sbjct: 31  DEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISC 90

Query: 110 YANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALR 169
             N A  Y K + + +A D  ++ L +D   +KA  +   A    G L+E+ E+   A  
Sbjct: 91  NLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150

Query: 170 LEPQNQEIKKQLAEVKSLY------EKEVFQK 195
           L P N +I+       +        +K  F  
Sbjct: 151 LNPNNLDIRNSYELCVNKLKEARKKDKLTFGG 182

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score =  119 bits (299), Expect = 2e-30
 Identities = 43/170 (25%), Positives = 71/170 (41%), Gaps = 22/170 (12%)

Query: 62  SSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT--------------- 106
           S  + +EE    +T  KE G   FK+ K+K+A+  Y + ++                   
Sbjct: 135 SWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQAL 194

Query: 107 -AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSE 165
              ++ N AM +LKL+ F  A + C +AL LD    K  SRR  A   +   + +  D +
Sbjct: 195 RLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQ 254

Query: 166 FALRLEPQNQEIKKQLAEVKSLY------EKEVFQKASKTLEKYGKSGMK 209
             L+L P N+  K QLA  +         EK+++    + L +       
Sbjct: 255 KVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLAEEENKAKA 304

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score =  113 bits (286), Expect = 3e-29
 Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 1/120 (0%)

Query: 73  DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCT 131
            A   +  G E F +  +  A+  Y+  I  +P  A  Y+NRA A  KL  F EA  DC 
Sbjct: 138 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCN 197

Query: 132 EALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKE 191
           +A+  D  +++AY R+ATA+  + +   ++E  + A   + +           +  Y+  
Sbjct: 198 KAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 257

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score =  102 bits (256), Expect = 5e-25
 Identities = 21/103 (20%), Positives = 42/103 (40%)

Query: 74  ATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEA 133
           A  EK  GN+ +K ++F EAI+ Y+++  L        NRA A  +   ++ A     +A
Sbjct: 5   ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDA 64

Query: 134 LNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 176
           +         Y   + +   +G     + D +  +    ++  
Sbjct: 65  VEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLT 107

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 82.6 bits (205), Expect = 4e-18
 Identities = 15/126 (11%), Positives = 45/126 (35%), Gaps = 4/126 (3%)

Query: 72  PDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDC 130
            D T         +++ +++ AI   + ++         Y   + ++ ++        D 
Sbjct: 36  KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDL 95

Query: 131 TEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEK 190
            + +    + +  + R A    +L   ++ ++ +E    + P+  E  +     K  + K
Sbjct: 96  KKTIEYYQKSLTEH-RTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEG--KEYFTK 152

Query: 191 EVFQKA 196
             +  A
Sbjct: 153 SDWPNA 158

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 76.1 bits (188), Expect = 8e-16
 Identities = 6/95 (6%), Positives = 25/95 (26%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDR 139
           +     +       +    ++I     ++     A    KLR  ++          ++  
Sbjct: 78  ISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPE 137

Query: 140 YIKAYSRRATARKELGKLKESIEDSEFALRLEPQN 174
             +                 +++     ++  P++
Sbjct: 138 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED 172

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 70.3 bits (173), Expect = 7e-14
 Identities = 16/80 (20%), Positives = 27/80 (33%), Gaps = 1/80 (1%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 138
                 K   F EAI   +++I   P    AY  +A A + ++ +  A +    A   D 
Sbjct: 179 RAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDA 238

Query: 139 RYIKAYSRRATARKELGKLK 158
                 S R   +      +
Sbjct: 239 EVNNGSSAREIDQLYYKASQ 258

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score =  116 bits (292), Expect = 1e-28
 Identities = 33/130 (25%), Positives = 64/130 (49%), Gaps = 1/130 (0%)

Query: 74  ATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEA 133
           A + K+ GN+ F+ KK+ +AI  Y+ ++ L    V Y+N +  Y+ +   ++  +  T+A
Sbjct: 6   ALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKA 65

Query: 134 LNLDDRYIKAYSRRATARKELGKLKESIED-SEFALRLEPQNQEIKKQLAEVKSLYEKEV 192
           L L   Y K   RRA+A + LGK  +++ D S  +L  +  +  I+  L    +      
Sbjct: 66  LELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSK 125

Query: 193 FQKASKTLEK 202
            ++    ++ 
Sbjct: 126 LKEKFGDIDT 135

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score =  104 bits (260), Expect = 3e-24
 Identities = 28/130 (21%), Positives = 46/130 (35%), Gaps = 2/130 (1%)

Query: 73  DATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTE 132
            A S +  G   F +     A +   ++I L P   +Y   A+         E  +   +
Sbjct: 236 LAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDK 295

Query: 133 ALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEV 192
           AL LD      Y  R      L    ++ +D + A  L+P+N     QLA +   Y +  
Sbjct: 296 ALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACL--AYRENK 353

Query: 193 FQKASKTLEK 202
           F        +
Sbjct: 354 FDDCETLFSE 363

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 90.2 bits (224), Expect = 1e-19
 Identities = 28/132 (21%), Positives = 48/132 (36%), Gaps = 3/132 (2%)

Query: 72  PDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDC 130
           P   S   +      +    E  + + +++ L    +  Y +R      L+ + +A  D 
Sbjct: 268 PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDF 327

Query: 131 TEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEK 190
            +A  LD   I  Y + A       K  +       A R  P+  E+    AE+  L +K
Sbjct: 328 DKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEI--LTDK 385

Query: 191 EVFQKASKTLEK 202
             F KA K  + 
Sbjct: 386 NDFDKALKQYDL 397

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 89.8 bits (223), Expect = 2e-19
 Identities = 24/127 (18%), Positives = 41/127 (32%), Gaps = 14/127 (11%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLK---------LRRFQEAEDD 129
                  +  F +A+  Y  +I L       Y   A    K         +  F EA + 
Sbjct: 378 FAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNL 437

Query: 130 CTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYE 189
             +A  LD R  +A    A  + +   + E+I   E +  L    +E  + +       E
Sbjct: 438 LEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAIT----FAE 493

Query: 190 KEVFQKA 196
               Q+ 
Sbjct: 494 AAKVQQR 500

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 88.3 bits (219), Expect = 5e-19
 Identities = 21/127 (16%), Positives = 46/127 (36%), Gaps = 4/127 (3%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 138
            G   F  + + +A   + ++  L P     Y   A    +  +F + E   +EA     
Sbjct: 310 RGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFP 369

Query: 139 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASK 198
              +  +  A    +     ++++  + A+ LE +   I   +A    L  K      + 
Sbjct: 370 EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIA---PLVGKATLLTRNP 426

Query: 199 TLEKYGK 205
           T+E + +
Sbjct: 427 TVENFIE 433

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 57.8 bits (140), Expect = 3e-09
 Identities = 17/91 (18%), Positives = 29/91 (31%), Gaps = 3/91 (3%)

Query: 74  ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTE 132
              +  L       + F EA +   ++  L P    A    A   L+     EA     E
Sbjct: 415 LVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEE 474

Query: 133 ALNLDDRYIKAYSRRATARKELGKLKESIED 163
           + +L     +     A    E  K+++ I  
Sbjct: 475 SADLARTMEEKLQ--AITFAEAAKVQQRIRS 503

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score =  111 bits (280), Expect = 1e-27
 Identities = 28/134 (20%), Positives = 56/134 (41%), Gaps = 1/134 (0%)

Query: 73  DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCT 131
           D     ELG +     +  +A+  +  ++   P   +AY  RA  +L + + + A  D T
Sbjct: 2   DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLT 61

Query: 132 EALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKE 191
           + + L   +  A  +R     + GKL E+ +D +  L+  P  QE K+  +++    E +
Sbjct: 62  KVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQ 121

Query: 192 VFQKASKTLEKYGK 205
             +  +        
Sbjct: 122 RLRSQALDAFDGAD 135

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score =  107 bits (269), Expect = 5e-26
 Identities = 24/120 (20%), Positives = 47/120 (39%), Gaps = 5/120 (4%)

Query: 76  SEKELGNECFKQKKFKEAIDCYSRSIALSPT-----AVAYANRAMAYLKLRRFQEAEDDC 130
              E   E  +  ++ +A   Y   +   P+       +       + K  +  EA   C
Sbjct: 236 KLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRIC 295

Query: 131 TEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEK 190
           +E L ++   + A   RA A        E+I+D E A      +Q+I++ L + + L ++
Sbjct: 296 SEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQ 355

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 88.9 bits (221), Expect = 1e-19
 Identities = 22/126 (17%), Positives = 47/126 (37%), Gaps = 1/126 (0%)

Query: 79  ELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLD 137
               + F    +  AI    + + +    A     RA  ++K    ++A  D   A  L 
Sbjct: 125 SQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK 184

Query: 138 DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKAS 197
               +A+ + +T   +LG  + S+ +    L+L+  ++       +VK L +     +  
Sbjct: 185 SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEEL 244

Query: 198 KTLEKY 203
               +Y
Sbjct: 245 IRDGRY 250

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 76.9 bits (190), Expect = 1e-15
 Identities = 21/139 (15%), Positives = 50/139 (35%), Gaps = 18/139 (12%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSP----------------TAVAYANRAMAYLKLRRF 123
            G+   KQ K  EA D + + +  +P                      ++A+       +
Sbjct: 77  RGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADY 136

Query: 124 QEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAE 183
             A     + L +     +    RA    + G+ +++I D + A +L+  N E   +++ 
Sbjct: 137 TAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKIST 196

Query: 184 VKSLYEKEVFQKASKTLEK 202
           +   Y+    + +   + +
Sbjct: 197 L--YYQLGDHELSLSEVRE 213

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 72.3 bits (178), Expect = 3e-14
 Identities = 17/115 (14%), Positives = 39/115 (33%), Gaps = 13/115 (11%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 138
                 K+ + ++AI     +  L      A+   +  Y +L   + +  +  E L LD 
Sbjct: 160 RAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ 219

Query: 139 RYIKAYSRRATARK------------ELGKLKESIEDSEFALRLEPQNQEIKKQL 181
            + + ++     +K              G+  ++    E  ++ EP   E   + 
Sbjct: 220 DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRS 274

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score =  112 bits (283), Expect = 2e-27
 Identities = 29/139 (20%), Positives = 58/139 (41%), Gaps = 1/139 (0%)

Query: 68  EESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEA 126
            +S  D     ELG +     +  +A+  +  ++   P   +AY  RA  +L + + + A
Sbjct: 20  FQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAA 79

Query: 127 EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKS 186
             D T+ + L   +  A  +R     + GKL E+ +D +  L+  P   E K+  +++  
Sbjct: 80  LPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIK 139

Query: 187 LYEKEVFQKASKTLEKYGK 205
             E +  +  +      G 
Sbjct: 140 SDEMQRLRSQALNAFGSGD 158

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score =  102 bits (257), Expect = 4e-24
 Identities = 26/129 (20%), Positives = 50/129 (38%), Gaps = 5/129 (3%)

Query: 78  KELGNECFKQKKFKEAIDCYSRSIALSPT-----AVAYANRAMAYLKLRRFQEAEDDCTE 132
            E   E  +  ++ +A   Y   +   P+       +       + K  +  EA   C+E
Sbjct: 261 IESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSE 320

Query: 133 ALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEV 192
            L ++   + A   RA A        E+I+D E A      +Q+I++ L + + L ++  
Sbjct: 321 VLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQ 380

Query: 193 FQKASKTLE 201
            +   K L 
Sbjct: 381 KRDYYKILG 389

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 87.4 bits (217), Expect = 7e-19
 Identities = 22/126 (17%), Positives = 47/126 (37%), Gaps = 1/126 (0%)

Query: 79  ELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLD 137
                 F    +  AI    + + +    A     RA  ++K    ++A  D   A  L 
Sbjct: 148 SQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK 207

Query: 138 DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKAS 197
           +   +A+ + +T   +LG  + S+ +    L+L+  ++       +VK L +     +  
Sbjct: 208 NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEEL 267

Query: 198 KTLEKY 203
               +Y
Sbjct: 268 IRDGRY 273

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 77.0 bits (190), Expect = 2e-15
 Identities = 21/139 (15%), Positives = 50/139 (35%), Gaps = 18/139 (12%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSP----------------TAVAYANRAMAYLKLRRF 123
            G+   KQ K  EA D + + +  +P                      ++A+       +
Sbjct: 100 RGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDY 159

Query: 124 QEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAE 183
             A     + L +     +    RA    + G+ +++I D + A +L+  N E   +++ 
Sbjct: 160 TAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKIST 219

Query: 184 VKSLYEKEVFQKASKTLEK 202
           +   Y+    + +   + +
Sbjct: 220 L--YYQLGDHELSLSEVRE 236

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 76.3 bits (188), Expect = 3e-15
 Identities = 22/127 (17%), Positives = 44/127 (34%), Gaps = 12/127 (9%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDR 139
            G +   +  + +++               +       L   +  +A      A++ D  
Sbjct: 9   SGVDLGTENLYFQSMADVE----------KHLELGKKLLAAGQLADALSQFHAAVDGDPD 58

Query: 140 YIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKT 199
              AY RRAT    +GK K ++ D    ++L+      + Q      L ++    +A   
Sbjct: 59  NYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRG--HLLLKQGKLDEAEDD 116

Query: 200 LEKYGKS 206
            +K  KS
Sbjct: 117 FKKVLKS 123

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 75.1 bits (185), Expect = 6e-15
 Identities = 23/101 (22%), Positives = 41/101 (40%), Gaps = 1/101 (0%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 138
           + +   K +K  EAI   S  + + P    A  +RA AYL    + EA  D   A   ++
Sbjct: 301 ICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNE 360

Query: 139 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKK 179
              +       A++ L + ++        ++   + QEI K
Sbjct: 361 NDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIK 401

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 72.8 bits (179), Expect = 4e-14
 Identities = 19/140 (13%), Positives = 47/140 (33%), Gaps = 19/140 (13%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANR------------AMAYLKLRRFQEA 126
           +    ++    + ++      + L       +A+             A   ++  R+ +A
Sbjct: 217 ISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDA 276

Query: 127 EDDCTEALNLD----DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLA 182
                  +  +    +  +++  R      +  K  E+I      L++EP N    K  A
Sbjct: 277 TSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRA 336

Query: 183 EVKSLYEKEVFQKASKTLEK 202
           E      +E++ +A +  E 
Sbjct: 337 EA--YLIEEMYDEAIQDYET 354

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score =  108 bits (271), Expect = 1e-26
 Identities = 41/164 (25%), Positives = 72/164 (43%), Gaps = 24/164 (14%)

Query: 67  NEESTPDATSEKELGNECFKQKKFKEAIDCYSRSI------------------ALSPTAV 108
            EE    A   K  GN  FK++K +EA+  Y  +I                  AL+    
Sbjct: 172 VEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNP 231

Query: 109 AYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFAL 168
            + N A   +KL+R+ EA   C   L  +++  KA  RR  A+ ELG++  + +D   A 
Sbjct: 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQ 291

Query: 169 RLEPQNQEIKKQLAEVKSLY------EKEVFQKASKTLEKYGKS 206
           +  P ++ I+++L  +          +KE+++   K  ++ G  
Sbjct: 292 KYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGAK 335

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score =  101 bits (254), Expect = 2e-23
 Identities = 38/150 (25%), Positives = 62/150 (41%), Gaps = 3/150 (2%)

Query: 66  MNEESTPD-ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRF 123
           ++       A   K  GN  F  K F EAI  Y  +I L P   V Y+N +  Y+     
Sbjct: 16  LSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDL 75

Query: 124 QEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIED-SEFALRLEPQNQEIKKQLA 182
           ++  +  T+AL +   + KA  RRA+A + LG   +++ D S  +L  +     I+  L 
Sbjct: 76  EKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLE 135

Query: 183 EVKSLYEKEVFQKASKTLEKYGKSGMKVNG 212
              +    +V  +     E  G   +  N 
Sbjct: 136 RNLNKQAMKVLNENLSKDEGRGSQVLPSNT 165

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 99.4 bits (248), Expect = 1e-22
 Identities = 32/130 (24%), Positives = 50/130 (38%), Gaps = 2/130 (1%)

Query: 73  DATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTE 132
            A +    G   F +    +A      SI L PT  +Y   A+        QE      +
Sbjct: 242 AALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQK 301

Query: 133 ALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEV 192
           A++L+  Y   Y  R      L   K + ED + A  L P+N     QLA +  LY++  
Sbjct: 302 AVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACL--LYKQGK 359

Query: 193 FQKASKTLEK 202
           F ++     +
Sbjct: 360 FTESEAFFNE 369

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 92.1 bits (229), Expect = 2e-20
 Identities = 28/132 (21%), Positives = 53/132 (40%), Gaps = 3/132 (2%)

Query: 72  PDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDC 130
           P   S   L      ++  +E    + +++ L+P     Y +R   Y  L+ ++ A++D 
Sbjct: 274 PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDF 333

Query: 131 TEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEK 190
            +A +L+   +  Y + A    + GK  ES           P   E+    AE+  L ++
Sbjct: 334 QKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEI--LTDR 391

Query: 191 EVFQKASKTLEK 202
             F  A K  + 
Sbjct: 392 GDFDTAIKQYDI 403

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 83.6 bits (207), Expect = 2e-17
 Identities = 28/138 (20%), Positives = 52/138 (37%), Gaps = 15/138 (10%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 138
            G   F  + +K A + + ++ +L+P     Y   A    K  +F E+E    E      
Sbjct: 316 RGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFP 375

Query: 139 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI--------------KKQLAEV 184
              +  +  A    + G    +I+  + A RLE   ++I               +Q ++ 
Sbjct: 376 TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQD 435

Query: 185 KSLYEKEVFQKASKTLEK 202
            +  ++E F  A K L K
Sbjct: 436 PTQLDEEKFNAAIKLLTK 453

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 83.2 bits (206), Expect = 2e-17
 Identities = 25/141 (17%), Positives = 39/141 (27%), Gaps = 21/141 (14%)

Query: 73  DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLK------------ 119
                         +  F  AI  Y  +  L       +        K            
Sbjct: 377 LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDP 436

Query: 120 ----LRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQ 175
                 +F  A    T+A  LD R  +A    A  + ++ K+ E+IE  E +  L     
Sbjct: 437 TQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMD 496

Query: 176 EIKKQLAEVKSLYEKEVFQKA 196
           E  +      +  E    QK 
Sbjct: 497 EKLQAT----TFAEAAKIQKR 513

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 74.4 bits (183), Expect = 2e-14
 Identities = 28/161 (17%), Positives = 51/161 (31%), Gaps = 7/161 (4%)

Query: 89  KFKEAIDCYSRSIALSPT-----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKA 143
                    ++   LSP+     AV   NR   +   + F EA      A+ LD      
Sbjct: 2   SHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVF 61

Query: 144 YSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKTLEKY 203
           YS  +      G L++ IE +  AL ++P + +   + A          F  A   L   
Sbjct: 62  YSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASA--NESLGNFTDAMFDLSVL 119

Query: 204 GKSGMKVNGHEVRAVRNTIQKTGVAEIQDLTISKKTENKNL 244
             +G          +   + K  +  + +     +     +
Sbjct: 120 SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQV 160

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 51.6 bits (124), Expect = 3e-07
 Identities = 16/120 (13%), Positives = 31/120 (25%), Gaps = 6/120 (5%)

Query: 86  KQKKFKEAIDCYSRSIALSPT---AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIK 142
               +  A    S ++    +           +       +       T    L +    
Sbjct: 185 TSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAAL 244

Query: 143 AYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKTLEK 202
           A             L ++    + ++ L P        LA    L +KE  Q+  K  +K
Sbjct: 245 ALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIF-LALT--LADKENSQEFFKFFQK 301

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 49.0 bits (117), Expect = 2e-06
 Identities = 15/111 (13%), Positives = 28/111 (25%), Gaps = 26/111 (23%)

Query: 73  DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCT 131
               +         ++KF  AI   +++  L P    A    A   L++ +  EA +   
Sbjct: 427 ILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFE 486

Query: 132 EALNL-------------------------DDRYIKAYSRRATARKELGKL 157
           ++  L                         D              +  G L
Sbjct: 487 DSAILARTMDEKLQATTFAEAAKIQKRLRADPIISAKMELTLARYRAKGML 537

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score =  100 bits (250), Expect = 3e-23
 Identities = 45/214 (21%), Positives = 81/214 (37%), Gaps = 35/214 (16%)

Query: 62  SSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSI----------------ALSP 105
           S  +  +E    A   KE G   FK  K+ +A+  Y + +                + S 
Sbjct: 256 SWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESF 315

Query: 106 TAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSE 165
              A+ N AM YLKLR + +A + C +AL LD    K   RR  A+  + + + +  D E
Sbjct: 316 LLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFE 375

Query: 166 FALRLEPQNQEIKKQLAEVKSLY------EKEVFQKASKTLEKYGKSGMKVNGHEVRAVR 219
             L + PQN+  + Q++  +         ++ ++    K   +                +
Sbjct: 376 KVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFKKFAEQDA-------------K 422

Query: 220 NTIQKTGVAEIQDLTISKKTENKNLRDESKTEGQ 253
               K    +  +   ++K  +    +E K EG 
Sbjct: 423 EEANKAMGKKTSEGVTNEKGTDSQAMEEEKPEGH 456

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score = 95.6 bits (238), Expect = 6e-22
 Identities = 38/145 (26%), Positives = 65/145 (44%), Gaps = 23/145 (15%)

Query: 74  ATSEKELGNECFKQKKFKEAIDCYSRSI----------------ALSPTAVA-YANRAMA 116
           +   K +GN  FK + ++ AI  Y++ +                 L P A++   N    
Sbjct: 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGAC 282

Query: 117 YLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 176
            LK+  +Q A D C EAL +D    KA  RRA   + L +  +++ D + A  + P+++ 
Sbjct: 283 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKA 342

Query: 177 IKKQLAEVKSLY------EKEVFQK 195
           I+ +L +VK         EK  + K
Sbjct: 343 IQAELLKVKQKIKAQKDKEKAAYAK 367

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 91.1 bits (227), Expect = 2e-20
 Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 1/106 (0%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 138
           L N   ++    EA DCY+ ++ L PT A +  N A    +    +EA     +AL +  
Sbjct: 277 LANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP 336

Query: 139 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEV 184
            +  A+S  A+  ++ GKL+E++   + A+R+ P   +    +   
Sbjct: 337 EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT 382

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 89.5 bits (223), Expect = 8e-20
 Identities = 35/124 (28%), Positives = 55/124 (44%), Gaps = 3/124 (2%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 138
           L    ++Q     AID Y R+I L P    AY N A A  +     EAED    AL L  
Sbjct: 243 LACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP 302

Query: 139 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASK 198
            +  + +  A  ++E G ++E++     AL + P+       LA V  L ++   Q+A  
Sbjct: 303 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASV--LQQQGKLQEALM 360

Query: 199 TLEK 202
             ++
Sbjct: 361 HYKE 364

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 89.5 bits (223), Expect = 9e-20
 Identities = 37/124 (29%), Positives = 57/124 (45%), Gaps = 3/124 (2%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 138
           LGN   + + F  A+  Y R+++LSP  AV + N A  Y +      A D    A+ L  
Sbjct: 209 LGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP 268

Query: 139 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASK 198
            +  AY   A A KE G + E+ +    ALRL P + +    LA +    E+   ++A +
Sbjct: 269 HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANI--KREQGNIEEAVR 326

Query: 199 TLEK 202
              K
Sbjct: 327 LYRK 330

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 89.5 bits (223), Expect = 9e-20
 Identities = 27/124 (21%), Positives = 51/124 (41%), Gaps = 3/124 (2%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 138
           L +  F+ ++   +    + +I  +P  A AY+N    Y +  + QEA +    AL L  
Sbjct: 39  LSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKP 98

Query: 139 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASK 198
            +I  Y   A A    G ++ +++    AL+  P    ++  L  +  L      ++A  
Sbjct: 99  DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNL--LKALGRLEEAKA 156

Query: 199 TLEK 202
              K
Sbjct: 157 CYLK 160

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 89.1 bits (222), Expect = 1e-19
 Identities = 32/124 (25%), Positives = 50/124 (40%), Gaps = 3/124 (2%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 138
           LGN      + +EA  CY ++I   P  AVA++N    +        A     +A+ LD 
Sbjct: 141 LGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP 200

Query: 139 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASK 198
            ++ AY       KE      ++     AL L P +  +   LA V   YE+ +   A  
Sbjct: 201 NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACV--YYEQGLIDLAID 258

Query: 199 TLEK 202
           T  +
Sbjct: 259 TYRR 262

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 87.2 bits (217), Expect = 4e-19
 Identities = 23/124 (18%), Positives = 45/124 (36%), Gaps = 3/124 (2%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 138
           L          + A+  Y  ++  +P      ++       L R +EA+    +A+    
Sbjct: 107 LAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQP 166

Query: 139 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASK 198
            +  A+S         G++  +I   E A+ L+P   +    L  V  L E  +F +A  
Sbjct: 167 NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNV--LKEARIFDRAVA 224

Query: 199 TLEK 202
              +
Sbjct: 225 AYLR 228

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 86.8 bits (216), Expect = 7e-19
 Identities = 29/118 (24%), Positives = 45/118 (38%), Gaps = 3/118 (2%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 138
           LG     Q +   AI  + +++ L P    AY N      + R F  A      AL+L  
Sbjct: 175 LGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 234

Query: 139 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKA 196
            +   +   A    E G +  +I+    A+ L+P   +    LA    L EK    +A
Sbjct: 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANA--LKEKGSVAEA 290

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 86.4 bits (215), Expect = 8e-19
 Identities = 29/124 (23%), Positives = 45/124 (36%), Gaps = 3/124 (2%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 138
           LGN   ++ + +EAI+ Y  ++ L P     Y N A A +     + A      AL  + 
Sbjct: 73  LGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP 132

Query: 139 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASK 198
                 S      K LG+L+E+      A+  +P        L  V     +     A  
Sbjct: 133 DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCV--FNAQGEIWLAIH 190

Query: 199 TLEK 202
             EK
Sbjct: 191 HFEK 194

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 81.0 bits (201), Expect = 5e-17
 Identities = 28/125 (22%), Positives = 47/125 (37%), Gaps = 3/125 (2%)

Query: 79  ELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLD 137
           EL +  ++   F+ A     +     P         +  + + RR   +    T A+  +
Sbjct: 4   ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63

Query: 138 DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKAS 197
               +AYS      KE G+L+E+IE    ALRL+P   +    LA    L      + A 
Sbjct: 64  PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAA--LVAAGDMEGAV 121

Query: 198 KTLEK 202
           +    
Sbjct: 122 QAYVS 126

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 70.3 bits (173), Expect = 2e-13
 Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 1/77 (1%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 138
           L N   +Q   +EA+  Y +++ + P  A A++N A    +  + QEA     EA+ +  
Sbjct: 311 LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 370

Query: 139 RYIKAYSRRATARKELG 155
            +  AYS      KE+ 
Sbjct: 371 TFADAYSNMGNTLKEMQ 387

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 59.5 bits (145), Expect = 6e-10
 Identities = 16/93 (17%), Positives = 29/93 (31%), Gaps = 2/93 (2%)

Query: 110 YANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALR 169
               A    +   F+ AE  C +    +          ++   +  +L  S   S  A++
Sbjct: 2   PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61

Query: 170 LEPQNQEIKKQLAEVKSLYEKEVFQKASKTLEK 202
             P   E    L  V    E+   Q+A +    
Sbjct: 62  QNPLLAEAYSNLGNV--YKERGQLQEAIEHYRH 92

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 84.0 bits (209), Expect = 4e-20
 Identities = 21/98 (21%), Positives = 44/98 (44%), Gaps = 3/98 (3%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNL-- 136
            G   +    + E+ID + ++I L P  +  +  +  A   L R++EA D     +N+  
Sbjct: 12  EGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIE 71

Query: 137 DDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN 174
           D+     ++ +A A + +   +   E +E   +LE  +
Sbjct: 72  DEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 58.6 bits (143), Expect = 5e-11
 Identities = 10/66 (15%), Positives = 25/66 (37%)

Query: 107 AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEF 166
              Y    +       + E+ D   +A+ LD    K +  +  A   L + +E+++   +
Sbjct: 6   PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNY 65

Query: 167 ALRLEP 172
            + +  
Sbjct: 66  VINVIE 71

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 87.2 bits (217), Expect = 8e-20
 Identities = 22/124 (17%), Positives = 46/124 (37%), Gaps = 3/124 (2%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 138
            GN    ++ +KEA D + +++         +       +KL + + A      A+ L++
Sbjct: 97  AGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE 156

Query: 139 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASK 198
              +A  +        G L E++         +P + +             KE  +KA +
Sbjct: 157 NDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVT--YAYKENREKALE 214

Query: 199 TLEK 202
            L+K
Sbjct: 215 MLDK 218

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 86.0 bits (214), Expect = 2e-19
 Identities = 22/124 (17%), Positives = 46/124 (37%), Gaps = 3/124 (2%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 138
             N      + + A+  Y +++ L  + A AY      Y+    ++EA+D   +AL    
Sbjct: 63  FANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGM 122

Query: 139 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASK 198
                +    T   +L + K ++   + A+ L   + E + Q      L  + +  +A  
Sbjct: 123 ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMC--LANEGMLDEALS 180

Query: 199 TLEK 202
               
Sbjct: 181 QFAA 184

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 85.6 bits (213), Expect = 2e-19
 Identities = 16/98 (16%), Positives = 33/98 (33%), Gaps = 1/98 (1%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 138
           LG    K ++ K A+    R++ L+     A     M         EA          D 
Sbjct: 131 LGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDP 190

Query: 139 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 176
            +  A+             ++++E  + A+ ++P +  
Sbjct: 191 GHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHML 228

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 84.9 bits (211), Expect = 5e-19
 Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 1/98 (1%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 138
                 +   +++A + ++++I  +   A+ Y N A     +   + A     +AL LD 
Sbjct: 29  QMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDS 88

Query: 139 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 176
               AY             KE+ +  E ALR   +N +
Sbjct: 89  SAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGD 126

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 70.6 bits (174), Expect = 5e-14
 Identities = 11/78 (14%), Positives = 27/78 (34%), Gaps = 1/78 (1%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 138
            G     +    EA+  ++      P  A A+ N  + Y      ++A +   +A+++  
Sbjct: 165 FGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQP 224

Query: 139 RYIKAYSRRATARKELGK 156
            ++ A   +         
Sbjct: 225 DHMLALHAKKLLGHHHHH 242

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 65.6 bits (161), Expect = 2e-12
 Identities = 16/116 (13%), Positives = 40/116 (34%), Gaps = 4/116 (3%)

Query: 87  QKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSR 146
                 +     R   ++   +    +     +   +++A +  T+A+  +      Y  
Sbjct: 5   HHHHHHSSGLVPRGSHMAS--MTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYIN 62

Query: 147 RATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKTLEK 202
            A     + +L+ ++   + AL L+            V     KE++++A    EK
Sbjct: 63  FANLLSSVNELERALAFYDKALELDSSAATAYYGAGNV--YVVKEMYKEAKDMFEK 116

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 82.8 bits (206), Expect = 2e-19
 Identities = 34/96 (35%), Positives = 53/96 (55%), Gaps = 1/96 (1%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSP-TAVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 138
           LGN  +KQ  + EAI+ Y +++ L P +A A+ N   AY K   + EA +   +AL LD 
Sbjct: 41  LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 100

Query: 139 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN 174
           R  +A+     A  + G   E+IE  + AL L+P++
Sbjct: 101 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 82.1 bits (204), Expect = 5e-19
 Identities = 35/98 (35%), Positives = 53/98 (54%), Gaps = 1/98 (1%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 138
           LGN  +KQ  + EAI+ Y +++ L P  A A+ N   AY K   + EA +   +AL LD 
Sbjct: 7   LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 66

Query: 139 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 176
           R  +A+     A  + G   E+IE  + AL L+P++ E
Sbjct: 67  RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE 104

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 57.4 bits (140), Expect = 2e-10
 Identities = 24/70 (34%), Positives = 36/70 (51%)

Query: 107 AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEF 166
           A A+ N   AY K   + EA +   +AL LD R  +A+     A  + G   E+IE  + 
Sbjct: 1   AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60

Query: 167 ALRLEPQNQE 176
           AL L+P++ E
Sbjct: 61  ALELDPRSAE 70

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 82.4 bits (205), Expect = 3e-19
 Identities = 35/98 (35%), Positives = 51/98 (52%), Gaps = 1/98 (1%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 138
           LGN  +KQ  + EAI+ Y +++ L P  A A+ N   AY K   + EA +   +AL LD 
Sbjct: 15  LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74

Query: 139 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 176
              +A+     A  + G   E+IE  + AL L+P N E
Sbjct: 75  NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE 112

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 67.8 bits (167), Expect = 4e-14
 Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 1/77 (1%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSP-TAVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 138
           LGN  +KQ  + EAI+ Y +++ L P  A A+ N   AY K   + EA +   +AL LD 
Sbjct: 49  LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 108

Query: 139 RYIKAYSRRATARKELG 155
              +A      A+++ G
Sbjct: 109 NNAEAKQNLGNAKQKQG 125

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 58.2 bits (142), Expect = 1e-10
 Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 2/77 (2%)

Query: 102 ALSPT--AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKE 159
           A+ P   A A+ N   AY K   + EA +   +AL LD    +A+     A  + G   E
Sbjct: 2   AMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDE 61

Query: 160 SIEDSEFALRLEPQNQE 176
           +IE  + AL L+P N E
Sbjct: 62  AIEYYQKALELDPNNAE 78

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 82.9 bits (206), Expect = 7e-19
 Identities = 22/124 (17%), Positives = 46/124 (37%), Gaps = 3/124 (2%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 138
           LG    K        +   RS+A +P          + Y++++++  A     +    + 
Sbjct: 48  LGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANP 107

Query: 139 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASK 198
                  R   A   LG+  E+I+  + AL L P   ++ + +A      +    ++A  
Sbjct: 108 INFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFS--YEQMGRHEEALP 165

Query: 199 TLEK 202
             +K
Sbjct: 166 HFKK 169

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 82.1 bits (204), Expect = 2e-18
 Identities = 21/98 (21%), Positives = 39/98 (39%), Gaps = 1/98 (1%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 138
           LG    + +K+  A+    +    +P          +A   L RF EA D    AL L  
Sbjct: 82  LGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP 141

Query: 139 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 176
              K +   A + +++G+ +E++   + A  L+     
Sbjct: 142 NEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASV 179

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 81.7 bits (203), Expect = 2e-18
 Identities = 11/98 (11%), Positives = 27/98 (27%), Gaps = 1/98 (1%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 138
            G    K  ++ +A+    +             +  +AY+K        +    +L    
Sbjct: 14  KGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP 73

Query: 139 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 176
             +K  +       ++ K   ++          P N  
Sbjct: 74  DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFN 111

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 59.4 bits (145), Expect = 1e-10
 Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 1/67 (1%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 138
           LG       +F EAID +  ++ L P     +   A +Y ++ R +EA     +A  LD+
Sbjct: 116 LGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDE 175

Query: 139 RYIKAYS 145
                 +
Sbjct: 176 GASVELA 182

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 57.5 bits (140), Expect = 5e-10
 Identities = 13/70 (18%), Positives = 27/70 (38%)

Query: 107 AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEF 166
            V Y ++ +++ K  R+ +A     +  + D   +        A  + G +    E  E 
Sbjct: 8   QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLER 67

Query: 167 ALRLEPQNQE 176
           +L   P N +
Sbjct: 68  SLADAPDNVK 77

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 83.7 bits (208), Expect = 7e-19
 Identities = 21/94 (22%), Positives = 34/94 (36%), Gaps = 2/94 (2%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDR 139
            G       +  +A     +++AL  T    +  A  YL + R  EA     +AL    +
Sbjct: 124 RGLVYALLGERDKAEASLKQALALEDTPEIRSALAELYLSMGRLDEALAQYAKALEQAPK 183

Query: 140 YIKAYSRRATARKELGKLKESIEDSEFALRLEPQ 173
            +    R A+A    GK +E+      AL     
Sbjct: 184 DLDLRVRYASALLLKGKAEEAAR--AAALEHHHH 215

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 79.1 bits (196), Expect = 3e-17
 Identities = 24/127 (18%), Positives = 54/127 (42%), Gaps = 4/127 (3%)

Query: 77  EKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALN 135
            ++  +    +   ++A+     +  ++P  A  +  R + Y  L    +AE    +AL 
Sbjct: 87  YRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALA 146

Query: 136 LDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQK 195
           L+D   +  S  A     +G+L E++     AL   P++ +++ + A    L  K   ++
Sbjct: 147 LED-TPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASA--LLLKGKAEE 203

Query: 196 ASKTLEK 202
           A++    
Sbjct: 204 AARAAAL 210

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 75.3 bits (186), Expect = 6e-16
 Identities = 20/105 (19%), Positives = 37/105 (35%), Gaps = 12/105 (11%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLR-----------RFQEAE 127
           L     K      A++     +A +P     Y   + AY+ L              ++A 
Sbjct: 45  LARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQAL 104

Query: 128 DDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEP 172
               +A  ++ RY   + +R      LG+  ++    + AL LE 
Sbjct: 105 SVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALED 149

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 74.9 bits (185), Expect = 8e-16
 Identities = 20/109 (18%), Positives = 42/109 (38%), Gaps = 12/109 (11%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 138
           LG + +   ++  A+  + R++  +P    A    A   LKL     A ++    +    
Sbjct: 11  LGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTP 70

Query: 139 RYIKAYSRRATA-----------RKELGKLKESIEDSEFALRLEPQNQE 176
           RY+  Y   + A            +  G L++++   + A R+ P+   
Sbjct: 71  RYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAP 119

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 55.2 bits (134), Expect = 6e-09
 Identities = 11/74 (14%), Positives = 26/74 (35%)

Query: 103 LSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIE 162
           +           +    L R+  A      AL  + +  +A    A  + +LG +  ++E
Sbjct: 1   MQTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALE 60

Query: 163 DSEFALRLEPQNQE 176
           + +  +   P+   
Sbjct: 61  NGKTLVARTPRYLG 74

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 84.3 bits (209), Expect = 1e-18
 Identities = 19/99 (19%), Positives = 36/99 (36%), Gaps = 1/99 (1%)

Query: 79  ELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLD 137
           E G           A + +S+++A+ P     +    +   +   F  A +     L LD
Sbjct: 48  ERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD 107

Query: 138 DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 176
             Y  A+  R  A    G+ K + +D     + +P +  
Sbjct: 108 PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPF 146

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 74.7 bits (184), Expect = 3e-15
 Identities = 20/138 (14%), Positives = 39/138 (28%), Gaps = 7/138 (5%)

Query: 70  STPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-----AVAYANRAMAYLKLRRFQ 124
           S       + L        + +  +    + +A         A     R + Y  L    
Sbjct: 1   SNTSWRKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRA 60

Query: 125 EAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEV 184
            A +D ++AL +     + ++       + G    + E  +  L L+P            
Sbjct: 61  LARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA 120

Query: 185 KSLYEKEVFQKASKTLEK 202
             LY     + A   L  
Sbjct: 121 --LYYGGRDKLAQDDLLA 136

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 73.5 bits (181), Expect = 8e-15
 Identities = 22/125 (17%), Positives = 44/125 (35%), Gaps = 3/125 (2%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 138
           LG    +   F  A + +   + L PT   A+ NR +A     R + A+DD       D 
Sbjct: 83  LGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP 142

Query: 139 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVK-SLYEKEVFQKAS 197
                      A ++L + K++ E  +       + Q     +     ++ E+ + ++  
Sbjct: 143 NDPFRSLWLYLAEQKLDE-KQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLK 201

Query: 198 KTLEK 202
                
Sbjct: 202 ADATD 206

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 69.6 bits (171), Expect = 1e-13
 Identities = 13/87 (14%), Positives = 29/87 (33%), Gaps = 2/87 (2%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 138
           LGN   +Q   +      + + +L+   +         YL L     A      A+  + 
Sbjct: 188 LGN-ISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 246

Query: 139 RYIKAYSRRATARKELGKLKESIEDSE 165
                +         LG+ ++ + +S+
Sbjct: 247 HNFVEHRYALLELSLLGQDQDDLAESD 273

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 58.9 bits (143), Expect = 5e-10
 Identities = 12/101 (11%), Positives = 28/101 (27%), Gaps = 5/101 (4%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLR---RFQEAEDDCTEALN 135
           L     ++   K+A +   +    S      +         +      +  + D T+  +
Sbjct: 151 LYL-AEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTS 209

Query: 136 LDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 176
           L +   +           LG L  +    + A+     N  
Sbjct: 210 LAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 47.3 bits (113), Expect = 4e-06
 Identities = 7/54 (12%), Positives = 17/54 (31%), Gaps = 1/54 (1%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTE 132
           LG           A   +  ++A +    V +    +    L + Q+   +  +
Sbjct: 221 LGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAESDQ 274

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 86.3 bits (214), Expect = 2e-18
 Identities = 19/125 (15%), Positives = 38/125 (30%), Gaps = 3/125 (2%)

Query: 79  ELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLD 137
             G      +  +  +    ++  L+P   VA A+       L   Q       +A  L 
Sbjct: 213 SNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 272

Query: 138 DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKAS 197
            + + A +  +  ++ L  ++  +     A  L PQ                 E  Q+  
Sbjct: 273 PQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGG--KQALETVQRLL 330

Query: 198 KTLEK 202
             L +
Sbjct: 331 PVLCQ 335

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 85.6 bits (212), Expect = 4e-18
 Identities = 16/124 (12%), Positives = 32/124 (25%), Gaps = 3/124 (2%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 138
                   +  +  +    ++  L+P   VA A+       L   Q       +A  L  
Sbjct: 350 HDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 409

Query: 139 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASK 198
             + A +     ++ L  ++  +     A  L PQ                 E       
Sbjct: 410 EQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGG--RPALESIVAQLS 467

Query: 199 TLEK 202
             + 
Sbjct: 468 RPDP 471

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 84.4 bits (209), Expect = 8e-18
 Identities = 18/124 (14%), Positives = 36/124 (29%), Gaps = 3/124 (2%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 138
            G      +  +  +    ++  L+P   VA A+       L   Q       +A  L  
Sbjct: 316 NGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTP 375

Query: 139 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASK 198
             + A +     ++ L  ++  +     A  L P+                 E  Q+   
Sbjct: 376 EQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGG--KQALETVQRLLP 433

Query: 199 TLEK 202
            L +
Sbjct: 434 VLCQ 437

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 84.0 bits (208), Expect = 1e-17
 Identities = 19/124 (15%), Positives = 38/124 (30%), Gaps = 3/124 (2%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 138
            G      +  +  +    ++  L+P   VA A+ +     L   Q       +A  L  
Sbjct: 248 NGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTP 307

Query: 139 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASK 198
           + + A +     ++ L  ++  +     A  L PQ                 E  Q+   
Sbjct: 308 QQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGG--KQALETVQRLLP 365

Query: 199 TLEK 202
            L +
Sbjct: 366 VLCQ 369

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 83.3 bits (206), Expect = 2e-17
 Identities = 19/124 (15%), Positives = 38/124 (30%), Gaps = 3/124 (2%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 138
            G      +  +  +    ++  L+P   VA A+       L   Q       +A  L  
Sbjct: 180 NGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 239

Query: 139 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASK 198
           + + A +     ++ L  ++  +     A  L PQ        +        E  Q+   
Sbjct: 240 QQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGG--KQALETVQRLLP 297

Query: 199 TLEK 202
            L +
Sbjct: 298 VLCQ 301

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 82.5 bits (204), Expect = 3e-17
 Identities = 17/124 (13%), Positives = 36/124 (29%), Gaps = 3/124 (2%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 138
                   +  +  +    ++  L+P   VA A+       L   Q       +A  L  
Sbjct: 282 NSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 341

Query: 139 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASK 198
           + + A +     ++ L  ++  +     A  L P+                 E  Q+   
Sbjct: 342 QQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGG--KQALETVQRLLP 399

Query: 199 TLEK 202
            L +
Sbjct: 400 VLCQ 403

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 82.1 bits (203), Expect = 4e-17
 Identities = 14/93 (15%), Positives = 30/93 (32%), Gaps = 1/93 (1%)

Query: 86  KQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAY 144
             +  +  +    ++  L+P   VA A+       L   Q       +A  L  + + A 
Sbjct: 390 ALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAI 449

Query: 145 SRRATARKELGKLKESIEDSEFALRLEPQNQEI 177
           +     R  L  +   +   + AL     +  +
Sbjct: 450 ASNGGGRPALESIVAQLSRPDPALAALTNDHLV 482

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 79.8 bits (197), Expect = 3e-16
 Identities = 15/99 (15%), Positives = 31/99 (31%), Gaps = 1/99 (1%)

Query: 79  ELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLD 137
                    +  +  +    ++  L+P   VA A+       L   Q       +A  L 
Sbjct: 145 SHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 204

Query: 138 DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 176
            + + A +     ++ L  ++  +     A  L PQ   
Sbjct: 205 PQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVV 243

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 79.4 bits (196), Expect = 4e-16
 Identities = 14/99 (14%), Positives = 30/99 (30%), Gaps = 1/99 (1%)

Query: 79  ELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLD 137
                    +  +  +    ++  L+P   VA A+       L   Q       +A  L 
Sbjct: 77  SHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLT 136

Query: 138 DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 176
              + A +     ++ L  ++  +     A  L P+   
Sbjct: 137 PEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVV 175

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 78.6 bits (194), Expect = 5e-16
 Identities = 18/124 (14%), Positives = 35/124 (28%), Gaps = 3/124 (2%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 138
                   +  +  +    ++  L+P   VA A+       L   Q       +A  L  
Sbjct: 112 HDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTP 171

Query: 139 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASK 198
             + A +     ++ L  ++  +     A  L PQ                 E  Q+   
Sbjct: 172 EQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGG--KQALETVQRLLP 229

Query: 199 TLEK 202
            L +
Sbjct: 230 VLCQ 233

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 66.7 bits (163), Expect = 4e-12
 Identities = 19/120 (15%), Positives = 35/120 (29%), Gaps = 8/120 (6%)

Query: 89  KFKEAIDCY-----SRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIK 142
              EA+  +        + L+P   VA A+       L   Q       +A  L  + + 
Sbjct: 48  TAVEAVHAWRNALTGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVV 107

Query: 143 AYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKTLEK 202
           A +     ++ L  ++  +     A  L P+                 E  Q     L +
Sbjct: 108 AIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGG--KQALETVQALLPVLCQ 165

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 49.0 bits (117), Expect = 2e-06
 Identities = 16/127 (12%), Positives = 30/127 (23%), Gaps = 3/127 (2%)

Query: 77  EKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALN 135
             +       +     A +     + L     +  A R                    LN
Sbjct: 7   HHQWSGARALEALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGAPLN 66

Query: 136 LDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQK 195
           L    + A +     ++ L  ++  +     A  L PQ                 E  Q+
Sbjct: 67  LTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGG--KQALETVQR 124

Query: 196 ASKTLEK 202
               L +
Sbjct: 125 LLPVLCQ 131

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 81.9 bits (203), Expect = 9e-18
 Identities = 18/125 (14%), Positives = 31/125 (24%), Gaps = 2/125 (1%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 138
            G    K+ +   AI  Y  ++    T    Y      +     F  A     + +    
Sbjct: 80  YGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT 139

Query: 139 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKS-LYEKEVFQKAS 197
              K +     A     +  ++       L L+P         A   +          A 
Sbjct: 140 TDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAK 199

Query: 198 KTLEK 202
              EK
Sbjct: 200 PYYEK 204

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 81.9 bits (203), Expect = 1e-17
 Identities = 24/128 (18%), Positives = 50/128 (39%), Gaps = 6/128 (4%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSP-TAVAYANRAMAYLKLRRFQEAEDDC---TEALN 135
             +  FK   + EAI+ +++  A    +   Y  RA+ Y +L ++  A+ D       +N
Sbjct: 9   YADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVN 68

Query: 136 LDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQK 195
                   +        + G+   +I+  + A+  +    ++  Q+      Y K  F  
Sbjct: 69  ATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSY--FYNKGNFPL 126

Query: 196 ASKTLEKY 203
           A + +EK 
Sbjct: 127 AIQYMEKQ 134

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 80.0 bits (198), Expect = 3e-17
 Identities = 17/127 (13%), Positives = 43/127 (33%), Gaps = 6/127 (4%)

Query: 80  LGNECFKQKKFKEAI---DCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALN 135
                ++  K+  A    + Y   +  +   +  +       +K  +   A      A++
Sbjct: 43  RAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVD 102

Query: 136 LDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQK 195
            D   +  Y +  +     G    +I+  E  +R    + ++  +L +    Y  + + K
Sbjct: 103 RDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQA--YYYNKEYVK 160

Query: 196 ASKTLEK 202
           A  +  K
Sbjct: 161 ADSSFVK 167

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 78.9 bits (195), Expect = 1e-16
 Identities = 21/135 (15%), Positives = 40/135 (29%), Gaps = 10/135 (7%)

Query: 78  KELGNECFKQKKFKEAIDCYSRSIALSP-TAVAYANRAMAYLKLRRFQEAEDDCTEALNL 136
            ++G+  + +  F  AI    + I  +      +     AY   + + +A+    + L L
Sbjct: 112 GQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL 171

Query: 137 DDRYIKAYSRRATARKELG---KLKESIEDSEFALRLEPQN-QEIKKQLAEV-----KSL 187
                  Y  RA A        K   +    E  + +      + K +L E         
Sbjct: 172 KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYY 231

Query: 188 YEKEVFQKASKTLEK 202
                  KA    + 
Sbjct: 232 TINRDKVKADAAWKN 246

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 75.8 bits (187), Expect = 1e-15
 Identities = 20/115 (17%), Positives = 40/115 (34%), Gaps = 12/115 (10%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLR---RFQEAEDDCTEALN 135
           LG   +  K++ +A   + + + L P   + Y  RA A        +   A+    + + 
Sbjct: 148 LGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIE 207

Query: 136 LD--------DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLA 182
           +         D  I+A    A          ++    +  L L+P N++    L 
Sbjct: 208 VCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLK 262

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 56.5 bits (137), Expect = 4e-09
 Identities = 16/100 (16%), Positives = 29/100 (29%), Gaps = 5/100 (5%)

Query: 106 TAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSE 165
                   A    K   + EA +   +           Y+RRA    EL K   + +D E
Sbjct: 2   NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIE 61

Query: 166 F---ALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKTLEK 202
                +          +   ++  L +K     A +  + 
Sbjct: 62  TYFSKVNATKAKSADFEYYGKI--LMKKGQDSLAIQQYQA 99

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 14/80 (17%), Positives = 19/80 (23%), Gaps = 9/80 (11%)

Query: 86  KQKKFKEAIDCYSRSIALSPT---------AVAYANRAMAYLKLRRFQEAEDDCTEALNL 136
              K   A   Y + I +              A    A  Y   R   +A+      L L
Sbjct: 191 PDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL 250

Query: 137 DDRYIKAYSRRATARKELGK 156
           D    KA        +    
Sbjct: 251 DPTNKKAIDGLKMKLEHHHH 270

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 82.0 bits (203), Expect = 2e-17
 Identities = 18/125 (14%), Positives = 42/125 (33%), Gaps = 1/125 (0%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 138
           LG        +  A     R++ L P  A  +           R QEA D    AL+++ 
Sbjct: 178 LGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINP 237

Query: 139 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASK 198
            Y++     A +   + +   + +    A+ ++        + +   +    + F+    
Sbjct: 238 GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLN 297

Query: 199 TLEKY 203
            + + 
Sbjct: 298 VMNRP 302

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 80.0 bits (198), Expect = 8e-17
 Identities = 14/118 (11%), Positives = 42/118 (35%), Gaps = 1/118 (0%)

Query: 60  HISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYL 118
            + S  +  +   D  + +          +++E       ++ ++P  A  +A+  + Y 
Sbjct: 124 QLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYN 183

Query: 119 KLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 176
               +  A  +   A+ L     + +++         + +E+++    AL + P    
Sbjct: 184 LSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVR 241

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 78.1 bits (193), Expect = 4e-16
 Identities = 17/128 (13%), Positives = 37/128 (28%), Gaps = 1/128 (0%)

Query: 79  ELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLD 137
           E G    K     EA   +      +P    A+ +  +   +  +   A      A  LD
Sbjct: 26  EEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD 85

Query: 138 DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKAS 197
            + I  ++  A +         ++      L  +PQ +++     +     +    Q   
Sbjct: 86  PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSED 145

Query: 198 KTLEKYGK 205
                  +
Sbjct: 146 FFFAAPNE 153

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 70.4 bits (173), Expect = 1e-13
 Identities = 20/133 (15%), Positives = 38/133 (28%), Gaps = 18/133 (13%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 138
           LG    + +K   AI   + +  L P     +A  A+++        A       L    
Sbjct: 61  LGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQP 120

Query: 139 RYIKAYSRRATAR---------------KELGKLKESIEDSEFALRLEPQNQEIKKQLAE 183
           +Y +  S    A                    + +E       AL + P + ++   L  
Sbjct: 121 QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGV 180

Query: 184 VKSLYEKEVFQKA 196
           +        +  A
Sbjct: 181 L--YNLSNNYDSA 191

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 61.2 bits (149), Expect = 2e-10
 Identities = 18/115 (15%), Positives = 31/115 (26%), Gaps = 3/115 (2%)

Query: 89  KFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRR 147
              +    Y                  ++ LKL    EA               +A+   
Sbjct: 2   HMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSL 61

Query: 148 ATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKTLEK 202
              + E  K   +I     A  L+P++  +   LA   S   +     A  +L  
Sbjct: 62  GLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAV--SHTNEHNANAALASLRA 114

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 79.0 bits (195), Expect = 3e-17
 Identities = 35/137 (25%), Positives = 52/137 (37%), Gaps = 16/137 (11%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDR 139
            G     +K +K A+D +S      P +    N    Y  L+   EAE   T ++N D  
Sbjct: 12  EGVLAADKKDWKGALDAFSA--VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH 69

Query: 140 YIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI---------KKQLAEVK----- 185
              AY +R     +  K   +I+D + AL     NQ I         K    EV      
Sbjct: 70  LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAF 129

Query: 186 SLYEKEVFQKASKTLEK 202
              +KE ++KA + L  
Sbjct: 130 MYAKKEEWKKAEEQLAL 146

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 49.7 bits (119), Expect = 4e-07
 Identities = 20/134 (14%), Positives = 41/134 (30%), Gaps = 25/134 (18%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSPT-----------------AVAYANRAMAYLKLRR 122
            G   ++ +K+  AI     ++                           N A  Y K   
Sbjct: 77  RGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE 136

Query: 123 FQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLA 182
           +++AE+    A ++      +   +A       KL        +   + P  +  +    
Sbjct: 137 WKKAEEQLALATSMKSEPRHSKIDKAMECVWKQKL--------YEPVVIPVGRLFRPNER 188

Query: 183 EVKSLYEKEVFQKA 196
           +V  L +K+   KA
Sbjct: 189 QVAQLAKKDYLGKA 202

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 48.2 bits (115), Expect = 1e-06
 Identities = 13/96 (13%), Positives = 34/96 (35%), Gaps = 5/96 (5%)

Query: 107 AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEF 166
           A++  N  +     + ++ A D  +    + D + +           L  + E+ +    
Sbjct: 6   AISLWNEGVLAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAEKAFTR 62

Query: 167 ALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKTLEK 202
           ++  +        Q   +   Y+ E +  A K L++
Sbjct: 63  SINRDKHLAVAYFQRGML--YYQTEKYDLAIKDLKE 96

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 80.8 bits (200), Expect = 4e-17
 Identities = 22/123 (17%), Positives = 42/123 (34%), Gaps = 10/123 (8%)

Query: 79  ELGNECFKQKKFKEAIDCYSRSIALSPT----------AVAYANRAMAYLKLRRFQEAED 128
           E+G   F+  ++K A   +  ++                    N      KL+++ EA D
Sbjct: 198 EVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALD 257

Query: 129 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLY 188
              +AL L  +    YS        +G  + +++    AL L   +      L     +Y
Sbjct: 258 YHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMY 317

Query: 189 EKE 191
             +
Sbjct: 318 IGD 320

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 75.8 bits (187), Expect = 2e-15
 Identities = 14/110 (12%), Positives = 31/110 (28%), Gaps = 1/110 (0%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSP-TAVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 138
            G+    + +  +A+  Y  +  L     +      + Y      + AE   ++AL++  
Sbjct: 131 YGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAP 190

Query: 139 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLY 188
                         + G+ K + +    AL                  L 
Sbjct: 191 EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLN 240

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 75.4 bits (186), Expect = 3e-15
 Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 1/87 (1%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 138
           LG+ C K KK+ EA+D + +++ L P  A  Y+     +  +  F+ A D    AL L  
Sbjct: 242 LGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR 301

Query: 139 RYIKAYSRRATARKELGKLKESIEDSE 165
               + +      +      E+   ++
Sbjct: 302 DDTFSVTMLGHCIEMYIGDSEAYIGAD 328

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 70.4 bits (173), Expect = 1e-13
 Identities = 16/118 (13%), Positives = 34/118 (28%), Gaps = 3/118 (2%)

Query: 86  KQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAY 144
              K + A    S++  L  T   A+     ++       +A      A  L        
Sbjct: 103 VGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPM 162

Query: 145 SRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKTLEK 202
                        K +      AL + P++  +  ++  V   ++   ++ A K    
Sbjct: 163 LYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVV--AFQNGEWKTAEKWFLD 218

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 14/92 (15%), Positives = 24/92 (26%), Gaps = 6/92 (6%)

Query: 83  ECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIK 142
               +    E++D       L        + A  +     F+      +  +  D  +  
Sbjct: 4   NKPSETVIPESVD------GLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHAS 57

Query: 143 AYSRRATARKELGKLKESIEDSEFALRLEPQN 174
                     EL K  E    S   + L P N
Sbjct: 58  CLPVHIGTLVELNKANELFYLSHKLVDLYPSN 89

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 53.8 bits (130), Expect = 3e-08
 Identities = 17/118 (14%), Positives = 30/118 (25%), Gaps = 4/118 (3%)

Query: 61  ISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLK 119
           I  S+   +   D      L    +    FK      S  +   P  A          ++
Sbjct: 11  IPESVDGLQENLDVVVS--LAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVE 68

Query: 120 LRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKES-IEDSEFALRLEPQNQE 176
           L +  E      + ++L      ++         +G   E        A  LE     
Sbjct: 69  LNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGP 126

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 81.4 bits (200), Expect = 1e-16
 Identities = 26/124 (20%), Positives = 54/124 (43%), Gaps = 3/124 (2%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 138
           L N   +Q   +EA+  Y +++ + P  A A++N A    +  + QEA     EA+ +  
Sbjct: 15  LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 74

Query: 139 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASK 198
            +  AYS      KE+  ++ +++    A+++ P   +    LA +    +     +A  
Sbjct: 75  TFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASI--HKDSGNIPEAIA 132

Query: 199 TLEK 202
           +   
Sbjct: 133 SYRT 136

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 80.2 bits (197), Expect = 2e-16
 Identities = 31/107 (28%), Positives = 53/107 (49%), Gaps = 1/107 (0%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 138
           L +   +Q K +EA+  Y  +I +SPT A AY+N      +++  Q A    T A+ ++ 
Sbjct: 49  LASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINP 108

Query: 139 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVK 185
            +  A+S  A+  K+ G + E+I     AL+L+P   +    LA   
Sbjct: 109 AFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCL 155

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 71.0 bits (173), Expect = 2e-13
 Identities = 23/106 (21%), Positives = 43/106 (40%), Gaps = 1/106 (0%)

Query: 73  DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCT 131
            A +   +GN   + +  + A+ CY+R+I ++P  A A++N A  +       EA     
Sbjct: 76  FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYR 135

Query: 132 EALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI 177
            AL L   +  AY   A   + +    +  E  +  + +     E 
Sbjct: 136 TALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEK 181

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 57.1 bits (137), Expect = 7e-09
 Identities = 23/102 (22%), Positives = 44/102 (43%), Gaps = 3/102 (2%)

Query: 102 ALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKES 160
              PT A +  N A    +    +EA     +AL +   +  A+S  A+  ++ GKL+E+
Sbjct: 3   GSCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEA 62

Query: 161 IEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKTLEK 202
           +   + A+R+ P   +    +     L E +  Q A +   +
Sbjct: 63  LMHYKEAIRISPTFADAYSNMGNT--LKEMQDVQGALQCYTR 102

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 81.0 bits (200), Expect = 1e-16
 Identities = 19/129 (14%), Positives = 44/129 (34%), Gaps = 6/129 (4%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSP-TAVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 138
             +    + +  +AI  Y+ +  L   T + Y    M +++L     A +    +  L  
Sbjct: 413 FAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQ 472

Query: 139 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEV-----KSLYEKEVF 193
                 +           ++ +I   + AL L  + Q  +K  A        +  + +++
Sbjct: 473 YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMY 532

Query: 194 QKASKTLEK 202
             A   L +
Sbjct: 533 DAAIDALNQ 541

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 79.9 bits (197), Expect = 3e-16
 Identities = 23/114 (20%), Positives = 38/114 (33%), Gaps = 8/114 (7%)

Query: 79  ELGNECFKQKKFKEAIDCYSRSIALSPT--------AVAYANRAMAYLKLRRFQEAEDDC 130
           ELG   F +   + AI+ +  ++ L           A  +AN   AY KL+ +  A D  
Sbjct: 480 ELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDAL 539

Query: 131 TEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEV 184
            + L L       ++  A           +I     +L + P        L   
Sbjct: 540 NQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRA 593

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 76.8 bits (189), Expect = 3e-15
 Identities = 23/124 (18%), Positives = 41/124 (33%), Gaps = 3/124 (2%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 138
           +G       K  EA   +S+S  + P    A+   A ++       +A    T A  L  
Sbjct: 379 VGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ 438

Query: 139 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASK 198
                Y        +LG +  + E  + +  L   +  +  +L  V   + K   Q A  
Sbjct: 439 GTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVV--AFNKSDMQTAIN 496

Query: 199 TLEK 202
             + 
Sbjct: 497 HFQN 500

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 66.0 bits (161), Expect = 9e-12
 Identities = 15/96 (15%), Positives = 35/96 (36%), Gaps = 1/96 (1%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 138
                 +  +  +     +  +   P  AV +    + YL + +  EA    +++  +D 
Sbjct: 345 HLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDP 404

Query: 139 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN 174
           ++  A+   A +    G+  ++I     A RL    
Sbjct: 405 QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGT 440

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 64.9 bits (158), Expect = 2e-11
 Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 1/75 (1%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 138
           LG+   K K +  AID  ++ + LS   A  +   A+ YL  +    A     E+L +  
Sbjct: 522 LGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISP 581

Query: 139 RYIKAYSRRATARKE 153
             I A      A +E
Sbjct: 582 NEIMASDLLKRALEE 596

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 63.7 bits (155), Expect = 4e-11
 Identities = 20/121 (16%), Positives = 39/121 (32%), Gaps = 1/121 (0%)

Query: 55  YDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSP-TAVAYANR 113
           +D V  ++ S  ++E      S   L       +      + Y  SI     ++     +
Sbjct: 252 WDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCK 311

Query: 114 AMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQ 173
           A       RF +     T+ L +D   +  Y     +  E G+  +    S   +   P+
Sbjct: 312 ADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPE 371

Query: 174 N 174
            
Sbjct: 372 K 372

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 62.9 bits (153), Expect = 7e-11
 Identities = 8/98 (8%), Positives = 30/98 (30%), Gaps = 1/98 (1%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 138
             +  F + +F + +   ++ + + P     Y     +  +     +      + ++   
Sbjct: 311 KADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHP 370

Query: 139 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 176
                +         + K+ E+      +  ++PQ   
Sbjct: 371 EKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGP 408

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 52.5 bits (126), Expect = 1e-07
 Identities = 20/194 (10%), Positives = 46/194 (23%), Gaps = 42/194 (21%)

Query: 48  GNSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT- 106
           G +     D  +     + +     +A+     G        F  A +CY  ++ +    
Sbjct: 174 GETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKC 233

Query: 107 --------------------------------------AVAYANRAMAYLKLRRFQEAED 128
                                                    Y  +          + AED
Sbjct: 234 YEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAED 293

Query: 129 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLY 188
               ++N  ++       +A       +  + +  +   L ++P N ++         L+
Sbjct: 294 -YLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLAS--LH 350

Query: 189 EKEVFQKASKTLEK 202
           E     K       
Sbjct: 351 ESGEKNKLYLISND 364

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 50.2 bits (120), Expect = 9e-07
 Identities = 19/173 (10%), Positives = 49/173 (28%), Gaps = 7/173 (4%)

Query: 21  KKMKHKASSKDNLVSSSLKSAKKPSPSGNSYSRNYDPVSHISSSLMNEESTPDATSE--- 77
                  +       ++  S  + S    S        +    S + E +  +  S    
Sbjct: 25  HANAAYMTPPSMGALNANNSNSQLSTLTISPMTYLANNTSTDGSFLKERNAQNTDSLSRE 84

Query: 78  ---KELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEAL 134
              +   ++   Q+++K A     + + ++         A  Y     +  A+   T+  
Sbjct: 85  DYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKE- 143

Query: 135 NLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSL 187
           +L +R        A    +L   + ++             +   K L +   +
Sbjct: 144 DLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGI 196

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 49.8 bits (119), Expect = 9e-07
 Identities = 28/130 (21%), Positives = 48/130 (36%), Gaps = 10/130 (7%)

Query: 81  GNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY 140
           G     +K  K A     +   +   A     R   Y  L  F  A++   EAL +D + 
Sbjct: 174 GETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKC 233

Query: 141 IKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYE----KEVFQKA 196
            +A+ +  +       L  + E+ +  L+L       K+  A ++SLY     K   +  
Sbjct: 234 YEAFDQLVS-----NHLLTADEEWDLVLKLNYSTY-SKEDAAFLRSLYMLKLNKTSHEDE 287

Query: 197 SKTLEKYGKS 206
            +  E Y  S
Sbjct: 288 LRRAEDYLSS 297

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 78.9 bits (195), Expect = 3e-16
 Identities = 22/125 (17%), Positives = 50/125 (40%), Gaps = 1/125 (0%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 138
           LG       +F  AID ++ ++ + P     +           R +EA +  T AL +  
Sbjct: 219 LGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQP 278

Query: 139 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASK 198
            +I++      +   LG  +E++ +   AL L+ +++  ++      S       + A  
Sbjct: 279 GFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALS 338

Query: 199 TLEKY 203
            +++ 
Sbjct: 339 LMDQP 343

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 74.3 bits (183), Expect = 1e-14
 Identities = 19/126 (15%), Positives = 37/126 (29%), Gaps = 3/126 (2%)

Query: 79  ELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLD 137
           E G +  K+      I     +I   P  A A+    +   +    Q A       L L 
Sbjct: 70  EEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ 129

Query: 138 DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKAS 197
              +KA    A +       +++ E  +  ++  P+ + + K               K+ 
Sbjct: 130 PNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGS--PGLTRRMSKSP 187

Query: 198 KTLEKY 203
                 
Sbjct: 188 VDSSVL 193

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 71.6 bits (176), Expect = 6e-14
 Identities = 16/94 (17%), Positives = 34/94 (36%), Gaps = 1/94 (1%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 138
           LG    + +  + AI    R + L P    A    A++Y      Q+A +     +  + 
Sbjct: 105 LGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNP 164

Query: 139 RYIKAYSRRATARKELGKLKESIEDSEFALRLEP 172
           +Y      +  +     ++ +S  DS     ++ 
Sbjct: 165 KYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKE 198

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 67.8 bits (166), Expect = 1e-12
 Identities = 12/102 (11%), Positives = 29/102 (28%), Gaps = 3/102 (2%)

Query: 78  KELGNECFKQKKFKEAIDCYSRSIALSPT---AVAYANRAMAYLKLRRFQEAEDDCTEAL 134
           + +          +   + Y  +   +             + +     F  A D    AL
Sbjct: 181 RRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAAL 240

Query: 135 NLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 176
            +       ++R         + +E++E    AL ++P    
Sbjct: 241 TVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIR 282

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 63.2 bits (154), Expect = 4e-11
 Identities = 21/150 (14%), Positives = 38/150 (25%), Gaps = 3/150 (2%)

Query: 54  NYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYAN 112
             +  +     +  E       +      E   Q     +   Y                
Sbjct: 11  AVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFKDWPGAFE 70

Query: 113 RAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEP 172
             +  LK             A+  D    +A+      + E    + +I   +  L L+P
Sbjct: 71  EGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQP 130

Query: 173 QNQEIKKQLAEVKSLYEKEVFQKASKTLEK 202
            N +    LA   S       Q A + L+ 
Sbjct: 131 NNLKALMALAV--SYTNTSHQQDACEALKN 158

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 59.3 bits (144), Expect = 6e-10
 Identities = 15/110 (13%), Positives = 35/110 (31%), Gaps = 13/110 (11%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 138
           L          ++A +     I  +P       N+  +    RR  ++  D +    + +
Sbjct: 139 LAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKE 198

Query: 139 RYIKA------------YSRRATARKELGKLKESIEDSEFALRLEPQNQE 176
            Y++A             +         G+   +I+    AL + P++  
Sbjct: 199 LYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYS 248

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 50.4 bits (121), Expect = 5e-07
 Identities = 17/125 (13%), Positives = 31/125 (24%), Gaps = 11/125 (8%)

Query: 87  QKKFKEAIDCYSRSIALSP---------TAVAYANRAMAYLKLRRFQEAEDDCTEALNLD 137
             +F+ A                         + +             +E          
Sbjct: 2   AMEFERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENP 61

Query: 138 DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKAS 197
            +           R + G L  +I   E A+  +P + E  + L       E E  Q A 
Sbjct: 62  FKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGIT--QAENENEQAAI 119

Query: 198 KTLEK 202
             L++
Sbjct: 120 VALQR 124

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 78.5 bits (194), Expect = 3e-16
 Identities = 19/108 (17%), Positives = 47/108 (43%), Gaps = 1/108 (0%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 138
           LG       ++ +A+DC++ ++++ P   + +           + +EA      AL L  
Sbjct: 223 LGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP 282

Query: 139 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKS 186
            YI++      +   LG  +E++E    AL ++ +++  + +   +  
Sbjct: 283 GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSE 330

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 76.6 bits (189), Expect = 2e-15
 Identities = 16/128 (12%), Positives = 33/128 (25%), Gaps = 1/128 (0%)

Query: 79  ELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLD 137
           E G    ++     A+  +  ++   P    A+        +  +   A       L L 
Sbjct: 69  EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK 128

Query: 138 DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKAS 197
                A    A +       +++ E     LR  P    +     E          ++  
Sbjct: 129 PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRIL 188

Query: 198 KTLEKYGK 205
            +L     
Sbjct: 189 GSLLSDSL 196

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 74.7 bits (184), Expect = 6e-15
 Identities = 17/120 (14%), Positives = 38/120 (31%), Gaps = 3/120 (2%)

Query: 60  HISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT---AVAYANRAMA 116
           H+ +              K +         F E  + +  ++ L PT           + 
Sbjct: 167 HLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVL 226

Query: 117 YLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 176
           +     + +A D  T AL++       +++         + +E++     AL L+P    
Sbjct: 227 FNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIR 286

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 63.1 bits (154), Expect = 5e-11
 Identities = 19/123 (15%), Positives = 38/123 (30%), Gaps = 7/123 (5%)

Query: 85  FKQKKFKEAIDCYSRSIALSPT-----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDR 139
           +           Y +                    +  L+      A      A+  D +
Sbjct: 37  WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK 96

Query: 140 YIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKT 199
           +++A+    T + E  +   +I      L L+P NQ     LA   S   + + ++A + 
Sbjct: 97  HMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAV--SFTNESLQRQACEI 154

Query: 200 LEK 202
           L  
Sbjct: 155 LRD 157

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 62.4 bits (152), Expect = 7e-11
 Identities = 20/101 (19%), Positives = 34/101 (33%), Gaps = 12/101 (11%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 138
           LG       + +EA+  Y R++ L P    +  N  ++ + L   +EA +   EALN+  
Sbjct: 257 LGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQR 316

Query: 139 RYIKAYSRRA-----------TARKELGKLKESIEDSEFAL 168
           +                     A   LG+           L
Sbjct: 317 KSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 8/69 (11%), Positives = 21/69 (30%), Gaps = 12/69 (17%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSP------------TAVAYANRAMAYLKLRRFQEAE 127
           LG  C      +EA++ +  ++ +              +   ++   +A   L +     
Sbjct: 291 LGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 350

Query: 128 DDCTEALNL 136
                 L+ 
Sbjct: 351 AADARDLST 359

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 78.9 bits (194), Expect = 8e-16
 Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 5/136 (3%)

Query: 69  ESTPD-ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEA 126
             TPD   +    G      +  +  +    ++  L+P   VA A+       L   Q  
Sbjct: 288 GLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRL 347

Query: 127 EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKS 186
                +A  L    + A +     ++ L  ++  +     A  L P            ++
Sbjct: 348 LPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGKQA 407

Query: 187 LYEKEVFQKASKTLEK 202
           L   E  Q+    L +
Sbjct: 408 L---ETVQRLLPVLCQ 420

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 78.9 bits (194), Expect = 9e-16
 Identities = 17/131 (12%), Positives = 34/131 (25%), Gaps = 3/131 (2%)

Query: 73  DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCT 131
              +           +  +  +    ++  L P   VA A+       L   Q       
Sbjct: 225 QVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLC 284

Query: 132 EALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKE 191
           +A  L    + A +     ++ L  ++  +     A  L P                  E
Sbjct: 285 QAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGG--KQALE 342

Query: 192 VFQKASKTLEK 202
             Q+    L +
Sbjct: 343 TVQRLLPVLCQ 353

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 77.0 bits (189), Expect = 4e-15
 Identities = 14/110 (12%), Positives = 31/110 (28%), Gaps = 1/110 (0%)

Query: 68  EESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEA 126
             +     +           +  +  +    ++  L+P   VA A+       L   Q  
Sbjct: 627 GLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRL 686

Query: 127 EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 176
                +A  L    + A +     ++ L  ++  +     A  L P    
Sbjct: 687 LPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVV 736

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 75.5 bits (185), Expect = 1e-14
 Identities = 17/124 (13%), Positives = 34/124 (27%), Gaps = 3/124 (2%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 138
                   +  +  +    ++  L+P   VA A+       L   Q       +A  L  
Sbjct: 198 NNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPP 257

Query: 139 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASK 198
             + A +     ++ L  ++  +     A  L P                  E  Q+   
Sbjct: 258 DQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGG--KQALETVQRLLP 315

Query: 199 TLEK 202
            L +
Sbjct: 316 VLCQ 319

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 71.2 bits (174), Expect = 3e-13
 Identities = 14/98 (14%), Positives = 29/98 (29%), Gaps = 1/98 (1%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 138
            G      +  +  +    ++  L+    VA A+       L   Q       +A  L  
Sbjct: 673 NGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTP 732

Query: 139 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 176
             + A +     ++ L  ++  +     A  L P    
Sbjct: 733 DQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVV 770

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 70.4 bits (172), Expect = 4e-13
 Identities = 17/124 (13%), Positives = 35/124 (28%), Gaps = 3/124 (2%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 138
                   +  +  +    ++  L+P   VA A+       L   Q+      +A  L  
Sbjct: 435 HDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTP 494

Query: 139 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASK 198
             + A +     ++ L  ++  +     A  L P                  E  Q+   
Sbjct: 495 DQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGG--KQALETVQRLLP 552

Query: 199 TLEK 202
            L +
Sbjct: 553 VLCQ 556

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 69.7 bits (170), Expect = 6e-13
 Identities = 14/99 (14%), Positives = 29/99 (29%), Gaps = 1/99 (1%)

Query: 79  ELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLD 137
             G      +  +  +    ++  L+    VA A+       L   Q       +A  L 
Sbjct: 570 SNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLT 629

Query: 138 DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 176
              + A +     ++ L  ++  +     A  L P    
Sbjct: 630 PAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVV 668

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 68.9 bits (168), Expect = 1e-12
 Identities = 13/108 (12%), Positives = 29/108 (26%), Gaps = 1/108 (0%)

Query: 70  STPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED 128
           +     +              +  +    ++  L+P   VA A+       L   Q    
Sbjct: 493 TPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLP 552

Query: 129 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 176
              +A  L    + A +     ++ L  ++  +     A  L      
Sbjct: 553 VLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVV 600

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 68.5 bits (167), Expect = 2e-12
 Identities = 15/103 (14%), Positives = 31/103 (30%), Gaps = 1/103 (0%)

Query: 73  DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCT 131
              +    G      +  +  +    ++  L+P   VA A+       L   Q       
Sbjct: 530 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLC 589

Query: 132 EALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN 174
           +A  L    + A +     ++ L  ++  +     A  L P  
Sbjct: 590 QAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQ 632

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 64.7 bits (157), Expect = 3e-11
 Identities = 15/117 (12%), Positives = 33/117 (28%), Gaps = 3/117 (2%)

Query: 87  QKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYS 145
            +  +  +    ++  L+P   VA A+       L   Q       +   L    + A +
Sbjct: 408 LETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIA 467

Query: 146 RRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKTLEK 202
                ++ L  +++ +     A  L P                     Q+    L +
Sbjct: 468 SHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGG--KQALATVQRLLPVLCQ 522

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 62.7 bits (152), Expect = 1e-10
 Identities = 14/99 (14%), Positives = 29/99 (29%), Gaps = 2/99 (2%)

Query: 79  ELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLD 137
             G      +  +  +    ++  L+P   VA A+       L   Q       +A  L 
Sbjct: 367 SNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGKQ-ALETVQRLLPVLCQAHGLT 425

Query: 138 DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 176
              + A +     ++ L  ++  +        L P    
Sbjct: 426 PDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVV 464

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 60.8 bits (147), Expect = 4e-10
 Identities = 17/125 (13%), Positives = 37/125 (29%), Gaps = 5/125 (4%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 138
                   +  +  +    ++  L+P   VA A+       L   Q       +A  L  
Sbjct: 707 NNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 766

Query: 139 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE-IKKQLAEVKSLYEKEVFQKAS 197
             + A +     ++ L  ++  +        L       I   +   ++L   E  Q+  
Sbjct: 767 AQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQAL---ETVQRLL 823

Query: 198 KTLEK 202
             L +
Sbjct: 824 PVLCQ 828

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 58.9 bits (142), Expect = 2e-09
 Identities = 16/91 (17%), Positives = 28/91 (30%), Gaps = 6/91 (6%)

Query: 92  EAIDCYSR-----SIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYS 145
           EA+           + L+P   VA A+       L   Q       +A  L    + A +
Sbjct: 171 EAVHASRNALTGAPLNLTPAQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIA 230

Query: 146 RRATARKELGKLKESIEDSEFALRLEPQNQE 176
                ++ L  ++  +     A  L P    
Sbjct: 231 SHDGGKQALETMQRLLPVLCQAHGLPPDQVV 261

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 48.1 bits (114), Expect = 4e-06
 Identities = 14/117 (11%), Positives = 33/117 (28%), Gaps = 4/117 (3%)

Query: 87  QKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYS 145
            +  +  +    ++  L+    VA A+       L   Q       +   L    + A +
Sbjct: 816 LETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTPDQVVAIA 875

Query: 146 RRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKTLEK 202
                ++ L  ++  +        L              ++L   E  Q+    L +
Sbjct: 876 SNIGGKQALETVQRLLPVLCQDHGLTLDQVVAIASNGGKQAL---ETVQRLLPVLCQ 929

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 48.1 bits (114), Expect = 5e-06
 Identities = 12/91 (13%), Positives = 27/91 (29%), Gaps = 1/91 (1%)

Query: 87  QKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYS 145
            +  +  +    ++  L+P   VA A+       L   Q       +   L    + A +
Sbjct: 748 LETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIA 807

Query: 146 RRATARKELGKLKESIEDSEFALRLEPQNQE 176
                ++ L  ++  +     A  L      
Sbjct: 808 SNIGGKQALETVQRLLPVLCQAHGLTQDQVV 838

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 45.8 bits (108), Expect = 2e-05
 Identities = 11/108 (10%), Positives = 28/108 (25%), Gaps = 2/108 (1%)

Query: 70  STPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED 128
           +     +           +  +  +    +   L+    VA A+       L   Q    
Sbjct: 867 TPDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLDQVVAIASNGG-KQALETVQRLLP 925

Query: 129 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 176
              +   L    + A +  +  ++ L  ++  +        L P    
Sbjct: 926 VLCQDHGLTPDQVVAIASNSGGKQALETVQRLLPVLCQDHGLTPNQVV 973

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 42.7 bits (100), Expect = 2e-04
 Identities = 16/112 (14%), Positives = 28/112 (25%), Gaps = 3/112 (2%)

Query: 92  EAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATA 150
           +A +     + L     V  A R                    LNL    + A +     
Sbjct: 142 DAGELRGPPLQLDTGQLVKIAKRGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGG 201

Query: 151 RKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKTLEK 202
           ++ L  ++  +     A  L P                  E  Q+    L +
Sbjct: 202 KQALETVQRLLPVLCQAHGLTPAQVVAIASHDGG--KQALETMQRLLPVLCQ 251

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 77.6 bits (191), Expect = 1e-15
 Identities = 19/107 (17%), Positives = 33/107 (30%), Gaps = 1/107 (0%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 138
           L +                R +AL P    A A         +R  EA     +A +   
Sbjct: 29  LADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAP 88

Query: 139 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVK 185
            +         A ++ G+ + +      A +L P+   I  QL   +
Sbjct: 89  EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWR 135

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 74.5 bits (183), Expect = 2e-14
 Identities = 19/114 (16%), Positives = 36/114 (31%), Gaps = 3/114 (2%)

Query: 90  FKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRA 148
               +     ++   P   VA+   A A L +      E      L L   + +A +R  
Sbjct: 5   GPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLG 64

Query: 149 TARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKTLEK 202
             R    +  E+    + A    P++  I   L     L +    + A+    +
Sbjct: 65  RVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHA--LEDAGQAEAAAAAYTR 116

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 57.9 bits (140), Expect = 3e-09
 Identities = 14/98 (14%), Positives = 29/98 (29%), Gaps = 2/98 (2%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 138
           LG   + Q++  EA     ++   +P           A     + + A    T A  L  
Sbjct: 63  LGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP 122

Query: 139 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 176
                 ++    R+ L     +++     +R       
Sbjct: 123 EEPYITAQLLNWRRRLCD-WRALDVLSAQVRAAVAQGV 159

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 45.2 bits (107), Expect = 3e-05
 Identities = 11/63 (17%), Positives = 18/63 (28%)

Query: 122 RFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQL 181
                      A+    +   A+   A A   +G         +  L L P + E   +L
Sbjct: 4   DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARL 63

Query: 182 AEV 184
             V
Sbjct: 64  GRV 66

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 71.6 bits (176), Expect = 2e-15
 Identities = 15/104 (14%), Positives = 29/104 (27%), Gaps = 3/104 (2%)

Query: 91  KEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRAT 149
           +   +     +A      +        Y +  +F  A      AL+ D  Y  A+     
Sbjct: 2   QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGK 61

Query: 150 ARKELGKLKESIEDSEFALRLEPQNQEI--KKQLAEVKSLYEKE 191
             +  G    + +  E  L       +    K+L        +E
Sbjct: 62  TLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLARE 105

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 52.3 bits (126), Expect = 7e-09
 Identities = 11/80 (13%), Positives = 22/80 (27%), Gaps = 3/80 (3%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 138
           LG    + ++F  A+     ++   PT +VA+               A       L    
Sbjct: 25  LGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQ 84

Query: 139 RY--IKAYSRRATARKELGK 156
                +         + L +
Sbjct: 85  SRGDQQVVKELQVFLRRLAR 104

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 71.7 bits (176), Expect = 2e-15
 Identities = 18/118 (15%), Positives = 36/118 (30%), Gaps = 1/118 (0%)

Query: 79  ELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLD 137
            LG   ++  K+ +A   +     L    A  +         L  +++A    +    +D
Sbjct: 23  ALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD 82

Query: 138 DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQK 195
               +     A    +LG L  +      A  L       +   A   ++ E    +K
Sbjct: 83  INEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAVTARK 140

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 61.3 bits (149), Expect = 1e-11
 Identities = 14/84 (16%), Positives = 27/84 (32%), Gaps = 4/84 (4%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNL-- 136
           LG        +++A+  YS    +         + A  +L+L     AE     A  L  
Sbjct: 58  LGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAA 117

Query: 137 -DDRYIKAYSRRATARKELGKLKE 159
               +    +R     + +   K+
Sbjct: 118 AQPAHEALAARAGAMLEAVTARKD 141

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 51.7 bits (124), Expect = 3e-08
 Identities = 12/107 (11%), Positives = 30/107 (28%), Gaps = 3/107 (2%)

Query: 97  YSRSIALSP-TAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG 155
            +    LS  T            +  ++ +A+        LD    + +      R+ LG
Sbjct: 7   LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66

Query: 156 KLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKTLEK 202
             +++++   +   ++          AE     +      A      
Sbjct: 67  LYEQALQSYSYGALMDINEPRFPFHAAE--CHLQLGDLDGAESGFYS 111

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 73.1 bits (180), Expect = 6e-15
 Identities = 23/127 (18%), Positives = 51/127 (40%), Gaps = 5/127 (3%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALN--L 136
           L      + + K A + Y +++A     A    N      + +R++EA     EA    L
Sbjct: 77  LAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTL 136

Query: 137 DDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKA 196
                + +        ++ K  ++ E  E +LRL      +  ++A++  LY++  +  A
Sbjct: 137 YPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADL--LYKEREYVPA 194

Query: 197 SKTLEKY 203
            +  + +
Sbjct: 195 RQYYDLF 201

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 71.9 bits (177), Expect = 2e-14
 Identities = 14/100 (14%), Positives = 40/100 (40%), Gaps = 3/100 (3%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALS--PT-AVAYANRAMAYLKLRRFQEAEDDCTEALNL 136
            G   ++QK+++EA      +   +  P  +  + N  +  L++++  +A++   ++L L
Sbjct: 111 YGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL 170

Query: 137 DDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 176
           +          A    +  +   + +  +   +   QN  
Sbjct: 171 NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNAR 210

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 67.7 bits (166), Expect = 5e-13
 Identities = 18/105 (17%), Positives = 33/105 (31%), Gaps = 1/105 (0%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 138
           LG    + KK  +A + + +S+ L+          A    K R +  A            
Sbjct: 147 LGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGG 206

Query: 139 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAE 183
           +  ++        K       +        RL P + E ++  AE
Sbjct: 207 QNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQAE 251

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 66.5 bits (163), Expect = 1e-12
 Identities = 16/92 (17%), Positives = 41/92 (44%), Gaps = 1/92 (1%)

Query: 79  ELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLD 137
           +LG    ++   ++A     +++ + P+ A A+A  A+ +      + A+++  +AL  D
Sbjct: 42  QLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD 101

Query: 138 DRYIKAYSRRATARKELGKLKESIEDSEFALR 169
            R  +  +       E  + +E+ +    A +
Sbjct: 102 SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQ 133

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 62.7 bits (153), Expect = 3e-11
 Identities = 21/124 (16%), Positives = 48/124 (38%), Gaps = 4/124 (3%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSPTAV-AYANRAMAYLKLRRFQEAEDDCTEALNLDD 138
             +    +           ++      A  AY    + YL+    ++A+    +AL +D 
Sbjct: 10  HSSGLVPRGSHMGD-QNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDP 68

Query: 139 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASK 198
               A++  A   +   + K + E+   AL  + +N  +         LYE++ +++A +
Sbjct: 69  SSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGF--LYEQKRYEEAYQ 126

Query: 199 TLEK 202
            L +
Sbjct: 127 RLLE 130

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 40.3 bits (95), Expect = 6e-04
 Identities = 7/60 (11%), Positives = 16/60 (26%), Gaps = 1/60 (1%)

Query: 79  ELGNECFKQKKFKEAIDCYSRSIALSP-TAVAYANRAMAYLKLRRFQEAEDDCTEALNLD 137
           E+ +  +K++++  A   Y          A +                A     +   L 
Sbjct: 180 EMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 72.1 bits (177), Expect = 7e-15
 Identities = 14/113 (12%), Positives = 42/113 (37%), Gaps = 3/113 (2%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAY-LKLRRFQEAEDDCTEALNLD 137
                  + + K+A+  Y + + L      A       Y L   + ++  +   + L+  
Sbjct: 94  CAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSP 153

Query: 138 DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEK 190
            +   A  R   ++    + +++    +  +   P + E +K L ++  + ++
Sbjct: 154 TKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFP-STEAQKTLDKILRIEKE 205

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 72.1 bits (177), Expect = 7e-15
 Identities = 21/139 (15%), Positives = 47/139 (33%), Gaps = 4/139 (2%)

Query: 66  MNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQ 124
           +++ S   +    EL     K + + +A   Y   +  +P         A   +   + +
Sbjct: 46  VDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEK 105

Query: 125 EAEDDCTEALNLDDRYIKAYSRRATARKELGKL-KESIEDSEFALRLEPQNQEIKKQLAE 183
           +A     + L L+   + A            +  K+ +E     L    + Q  + +   
Sbjct: 106 DALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDG- 164

Query: 184 VKSLYEKEVFQKASKTLEK 202
             S      ++KA  +L+K
Sbjct: 165 -LSKLFTTRYEKARNSLQK 182

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 69.0 bits (169), Expect = 1e-13
 Identities = 26/142 (18%), Positives = 50/142 (35%), Gaps = 20/142 (14%)

Query: 79  ELGNECFKQKKFKEAIDCYSRSIALSP-----------------TAVAYANRAMAYLKLR 121
           +  +   +  +  +A+  + ++IAL+                  ++      A+AY K R
Sbjct: 9   QKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNR 68

Query: 122 RFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQL 181
            + +A     E L      +      A  +   G+ K+++   E  L+LE  N      L
Sbjct: 69  NYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFL 128

Query: 182 AEVKSLYEK-EVFQKASKTLEK 202
                 Y   E  +K  +T  K
Sbjct: 129 GNY--YYLTAEQEKKKLETDYK 148

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 46.7 bits (111), Expect = 4e-06
 Identities = 15/113 (13%), Positives = 37/113 (32%), Gaps = 18/113 (15%)

Query: 106 TAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAY----------------SRRAT 149
           +      +  A ++  +  +A     + + L+    + Y                +  A 
Sbjct: 3   SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELAL 62

Query: 150 ARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKTLEK 202
           A K+     ++    +  L+  P N +  +  AE+     +   + A +  EK
Sbjct: 63  AYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEM--QVCRGQEKDALRMYEK 113

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 64.7 bits (159), Expect = 2e-13
 Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 1/77 (1%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 138
           LGN  +KQ  + EAI+ Y +++ L P  A A+ N   AY K   + EA +   +AL LD 
Sbjct: 15  LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74

Query: 139 RYIKAYSRRATARKELG 155
              +A      A+++ G
Sbjct: 75  NNAEAKQNLGNAKQKQG 91

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 58.2 bits (142), Expect = 4e-11
 Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 2/77 (2%)

Query: 102 ALSPT--AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKE 159
           A+ P   A A+ N   AY K   + EA +   +AL LD    +A+     A  + G   E
Sbjct: 2   AMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDE 61

Query: 160 SIEDSEFALRLEPQNQE 176
           +IE  + AL L+P N E
Sbjct: 62  AIEYYQKALELDPNNAE 78

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 64.8 bits (158), Expect = 8e-13
 Identities = 14/110 (12%), Positives = 32/110 (29%), Gaps = 1/110 (0%)

Query: 79  ELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLD 137
               + + + + +EA   +                 A  Y    +FQ+A D    A  L 
Sbjct: 41  SYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG 100

Query: 138 DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSL 187
                        +  L    ++ E  E  ++     +   K  + + ++
Sbjct: 101 KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIKAQSYLDAI 150

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 49.4 bits (118), Expect = 2e-07
 Identities = 14/128 (10%), Positives = 32/128 (25%), Gaps = 3/128 (2%)

Query: 76  SEKELGNECFKQKKFKEAIDCYSRSIALSP-TAVAYANRAMAYLKLRRFQEAEDDCTEAL 134
           +  E  +          +        A+         + A  +    R +EAE       
Sbjct: 4   NITENESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLC 63

Query: 135 NLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQ 194
             D   +      A   +   + +++ +    A  L   +        +       +   
Sbjct: 64  IYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQ--CQLRLKAPL 121

Query: 195 KASKTLEK 202
           KA +  E 
Sbjct: 122 KAKECFEL 129

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 64.9 bits (158), Expect = 8e-13
 Identities = 15/113 (13%), Positives = 34/113 (30%), Gaps = 1/113 (0%)

Query: 79  ELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLD 137
            L    ++   +++A   +     L    +  +         + ++  A    +    +D
Sbjct: 26  SLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85

Query: 138 DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEK 190
               +     A    + G+L E+      A  L     E  +    V S+ E 
Sbjct: 86  IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLEA 138

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 54.5 bits (131), Expect = 3e-09
 Identities = 14/115 (12%), Positives = 32/115 (27%), Gaps = 3/115 (2%)

Query: 89  KFKEAIDCYSRSIALSP-TAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRR 147
                    +    +S  T     + A    +   +++A         LD    + +   
Sbjct: 2   PLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGL 61

Query: 148 ATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKTLEK 202
              R+ +G+   +I    +   ++          AE   L +     +A   L  
Sbjct: 62  GACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAE--CLLQXGELAEAESGLFL 114

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 53.0 bits (127), Expect = 9e-09
 Identities = 16/84 (19%), Positives = 23/84 (27%), Gaps = 1/84 (1%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSP-TAVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 138
           LG       ++  AI  YS    +         + A   L+     EAE     A  L  
Sbjct: 61  LGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIA 120

Query: 139 RYIKAYSRRATARKELGKLKESIE 162
              +           L  +K   E
Sbjct: 121 NXPEFXELSTRVSSMLEAIKLKKE 144

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 66.1 bits (162), Expect = 1e-12
 Identities = 17/96 (17%), Positives = 38/96 (39%), Gaps = 3/96 (3%)

Query: 84  CFKQKKFKEAIDCYSRSIALS--PT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY 140
           C +  +  E++  + +++A    PT  +A  N+ +   K  +F  AE     +L    ++
Sbjct: 87  CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQF 146

Query: 141 IKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 176
             A+   A  +   G+L ++    +         Q 
Sbjct: 147 PPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQA 182

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 62.3 bits (152), Expect = 2e-11
 Identities = 18/104 (17%), Positives = 44/104 (42%), Gaps = 2/104 (1%)

Query: 68  EESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEA 126
           E++   +  + +L  E  + + +++A      ++   P   +A+  RA  Y  L+   +A
Sbjct: 2   EKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKA 61

Query: 127 EDDCTEALNLDDRYIKAYSRRATA-RKELGKLKESIEDSEFALR 169
           ++   +AL++     +  +         L +  ES+   + AL 
Sbjct: 62  QESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALA 105

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 56.9 bits (138), Expect = 2e-09
 Identities = 16/94 (17%), Positives = 30/94 (31%), Gaps = 3/94 (3%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 138
            G    KQ +F  A     RS+A  P    A+   A   +   +  +A+    +  +  +
Sbjct: 119 KGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVE 178

Query: 139 RYIKAYSRRATARKELGKLKESIEDSEFALRLEP 172
                        K    L  +    E+  +L+ 
Sbjct: 179 VLQADD--LLLGWKIAKALGNAQAAYEYEAQLQA 210

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 54.6 bits (132), Expect = 9e-09
 Identities = 17/71 (23%), Positives = 33/71 (46%)

Query: 107 AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEF 166
           +      AM Y++ + +++A     +AL  D +   A+  RA   + L    ++ E    
Sbjct: 8   SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQ 67

Query: 167 ALRLEPQNQEI 177
           AL ++P + EI
Sbjct: 68  ALSIKPDSAEI 78

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 61.3 bits (149), Expect = 7e-12
 Identities = 14/95 (14%), Positives = 32/95 (33%), Gaps = 4/95 (4%)

Query: 89  KFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAY 144
              +A+  Y ++IA        A  Y      +  L  +++AE      +     +    
Sbjct: 5   LEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALR 64

Query: 145 SRRATARKELGKLKESIEDSEFALRLEPQNQEIKK 179
              A     LG+ ++ +E     +     ++ I+ 
Sbjct: 65  VFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQS 99

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 45.9 bits (109), Expect = 1e-06
 Identities = 12/70 (17%), Positives = 28/70 (40%), Gaps = 3/70 (4%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNL-- 136
           LG+      ++++A    +  +   P         AM    L R+++  +   + +    
Sbjct: 33  LGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETS 92

Query: 137 DDRYIKAYSR 146
           DD  I++Y +
Sbjct: 93  DDETIQSYKQ 102

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 41.2 bits (97), Expect = 7e-05
 Identities = 13/84 (15%), Positives = 32/84 (38%), Gaps = 5/84 (5%)

Query: 122 RFQEAEDDCTEALNL---DDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK 178
              +A     +A+          + Y    +  + LG+ +++       ++  P +Q ++
Sbjct: 5   LEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALR 64

Query: 179 KQLAEVKSLYEKEVFQKASKTLEK 202
              A V  LY    +++  + L K
Sbjct: 65  VFYAMV--LYNLGRYEQGVELLLK 86

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 60.4 bits (147), Expect = 8e-12
 Identities = 16/89 (17%), Positives = 25/89 (28%), Gaps = 6/89 (6%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 138
           L  E  K      A+  +   +   P     Y +    Y +L R  +A D   + + +  
Sbjct: 13  LAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72

Query: 139 RYIKAYSRRATARKELGKLKESIEDSEFA 167
                         EL   K   E  E  
Sbjct: 73  EEGTQK-----DLSELQDAKLKAEGLEHH 96

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 57.7 bits (140), Expect = 8e-11
 Identities = 16/97 (16%), Positives = 33/97 (34%), Gaps = 7/97 (7%)

Query: 107 AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEF 166
                  A  +LK      A     E +  D  Y+  Y       + L +  ++I+    
Sbjct: 7   PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQ 66

Query: 167 ALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKTLEKY 203
            +       E+ ++    K L E +  +  ++ LE +
Sbjct: 67  GI-------EVAREEGTQKDLSELQDAKLKAEGLEHH 96

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 65.8 bits (160), Expect = 8e-12
 Identities = 15/124 (12%), Positives = 41/124 (33%), Gaps = 8/124 (6%)

Query: 87  QKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRF-QEAEDDCTEALNLDDRYIKAY 144
           Q++ ++ +      +  +   A A   +  A      +  EAE   ++A+ L+   ++A+
Sbjct: 81  QEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAW 140

Query: 145 SRRATARKELGKLKESIEDSEFALRLEPQNQE------IKKQLAEVKSLYEKEVFQKASK 198
           ++      + G +  +      AL              + +QL              + +
Sbjct: 141 NQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVR 200

Query: 199 TLEK 202
             + 
Sbjct: 201 QAKL 204

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 65.0 bits (158), Expect = 1e-11
 Identities = 15/112 (13%), Positives = 39/112 (34%), Gaps = 17/112 (15%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKL---------RRFQEAEDDC 130
           LG   +K+     A  C+S ++      V+  N +M   +L         R   ++    
Sbjct: 143 LGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQA 202

Query: 131 TEALNLDDRYIKAYSRRATA--------RKELGKLKESIEDSEFALRLEPQN 174
             A+ +D    +++     A         +     ++++     A +++ + 
Sbjct: 203 KLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKA 254

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 62.7 bits (152), Expect = 9e-11
 Identities = 22/145 (15%), Positives = 50/145 (34%), Gaps = 17/145 (11%)

Query: 77  EKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYL--------KLRRFQEAE 127
           + +  +     +   +++     ++ +      ++     AYL          +  Q+A 
Sbjct: 182 QLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQAL 241

Query: 128 DDCTEALNLDDR---YIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEV 184
               +A  +D +       +  RAT  K      E++E    A  L+P   E +++  ++
Sbjct: 242 SAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQL 301

Query: 185 KSLYEKEVFQKASKTLEKYGKSGMK 209
                +         LE  GK+  K
Sbjct: 302 LEFLSR--LTSL---LESKGKTKPK 321

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 60.4 bits (146), Expect = 4e-10
 Identities = 18/118 (15%), Positives = 44/118 (37%), Gaps = 8/118 (6%)

Query: 86  KQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYI 141
             K  ++A+  Y+++  +          + NRA  +     + EA +  ++A  LD  + 
Sbjct: 233 NPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWP 292

Query: 142 KAYSRRATARKELGKLKESIEDSEFALRLEPQN-QEIKKQLAEVKSLYEKEVFQKASK 198
           +   R     + L +L   +E      + +P+  Q +   L         +   +++ 
Sbjct: 293 EPQQREQQLLEFLSRLTSLLESKG---KTKPKKLQSMLGSLRPAHLGPCGDGRYQSAS 347

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 56.9 bits (137), Expect = 5e-09
 Identities = 15/106 (14%), Positives = 35/106 (33%), Gaps = 12/106 (11%)

Query: 80  LGNECFKQKKF-KEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLD 137
            G        +  EA    S+++ L P    A+      Y K      A    + AL   
Sbjct: 108 KGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC 167

Query: 138 DRYIKAYSRRATARKELGK---------LKESIEDSEFALRLEPQN 174
                +    +   ++L           + +S+  ++ A++++  +
Sbjct: 168 KNK-VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLD 212

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 60.2 bits (146), Expect = 2e-11
 Identities = 16/96 (16%), Positives = 29/96 (30%), Gaps = 1/96 (1%)

Query: 79  ELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLD 137
           E G    K     EA   +       P    A+ +  +   +  +   A      A  LD
Sbjct: 22  EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD 81

Query: 138 DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQ 173
            + I  ++  A +         ++      L  +PQ
Sbjct: 82  PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 117

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 48.2 bits (115), Expect = 2e-07
 Identities = 17/91 (18%), Positives = 30/91 (32%), Gaps = 2/91 (2%)

Query: 112 NRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLE 171
              ++ LKL    EA          +    +A+      + E  K   +I     A  L+
Sbjct: 22  EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD 81

Query: 172 PQNQEIKKQLAEVKSLYEKEVFQKASKTLEK 202
           P++  +   LA   S   +     A  +L  
Sbjct: 82  PKDIAVHAALAV--SHTNEHNANAALASLRA 110

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 48.2 bits (115), Expect = 3e-07
 Identities = 12/62 (19%), Positives = 21/62 (33%), Gaps = 1/62 (1%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 138
           LG    + +K   AI   + +  L P     +A  A+++        A       L    
Sbjct: 57  LGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQP 116

Query: 139 RY 140
           +Y
Sbjct: 117 QY 118

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 63.8 bits (155), Expect = 4e-11
 Identities = 26/124 (20%), Positives = 41/124 (33%), Gaps = 8/124 (6%)

Query: 86  KQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQ----EAEDDCTEALNLDDRY 140
                + AID   ++I L+P         A+   K+R       E E    EAL      
Sbjct: 187 NWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGV 246

Query: 141 IKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKASKTL 200
                  A   +   +  ++IE  + AL   P N  +  Q+      Y  +VFQ  +   
Sbjct: 247 TDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIG---CCYRAKVFQVMNLRE 303

Query: 201 EKYG 204
               
Sbjct: 304 NGMY 307

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 58.4 bits (141), Expect = 2e-09
 Identities = 27/139 (19%), Positives = 52/139 (37%), Gaps = 10/139 (7%)

Query: 72  PDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRF---QEAE 127
           P+   E+          + + A  C+ +++   P      +  A+A  +L  +   Q A 
Sbjct: 136 PELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAI 195

Query: 128 DDCTEALNLDDRYIKAYSRRATA----RKELGKLKESIEDSEFALRLEPQNQEIKKQLAE 183
           D   +A+ L+          A      R+E  +  E  +  E AL   P   ++ +  A+
Sbjct: 196 DPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAK 255

Query: 184 VKSLYEKEVFQKASKTLEK 202
                 K+   KA + L+K
Sbjct: 256 F--YRRKDEPDKAIELLKK 272

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 56.9 bits (137), Expect = 6e-09
 Identities = 9/130 (6%), Positives = 44/130 (33%), Gaps = 5/130 (3%)

Query: 73  DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCT 131
               E  +  +    +    A+    ++   +       +  A  +    +++EAE    
Sbjct: 299 MNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQ 358

Query: 132 EALNLDDRYIKA----YSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSL 187
           +  + +   +               ++    ++I      +++  +++E +K   +++ +
Sbjct: 359 KEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKI 418

Query: 188 YEKEVFQKAS 197
            +  + +  +
Sbjct: 419 AKMRLSKNGA 428

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 54.9 bits (132), Expect = 3e-08
 Identities = 13/117 (11%), Positives = 30/117 (25%), Gaps = 20/117 (17%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLK------------------- 119
                 ++ +  +AI+   +++   P  A  +      Y                     
Sbjct: 253 AAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKL 312

Query: 120 LRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 176
           L     A     +A   +D   +  S  A+      + +E+    +     E     
Sbjct: 313 LELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVA 369

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 53.4 bits (128), Expect = 7e-08
 Identities = 16/143 (11%), Positives = 40/143 (27%), Gaps = 22/143 (15%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 138
           L     + ++  E       ++  +P       + A  Y +     +A +   +AL    
Sbjct: 219 LHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIP 278

Query: 139 RYIKAYSRRATA-------------------RKELGKLKESIEDSEFALRLEPQNQEIKK 179
                + +                       RK L  +  ++   + A         +  
Sbjct: 279 NNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCS 338

Query: 180 QLAEVKSLYEKEVFQKASKTLEK 202
            LA +      + +++A    +K
Sbjct: 339 ILASL--HALADQYEEAEYYFQK 359

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 52.2 bits (125), Expect = 2e-07
 Identities = 23/139 (16%), Positives = 43/139 (30%), Gaps = 16/139 (11%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSP---------TAVAYANRAMAYLKL--RRFQEAED 128
                +   +  +      +   +           +           LK    + + A+ 
Sbjct: 100 YAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKV 159

Query: 129 DCTEALNLDDRYIKAYSRRATAR---KELGKLKESIEDSEFALRLEPQNQEIKKQLAEV- 184
              +AL    +  +  S  A A          + +I+    A+RL P NQ +K  LA   
Sbjct: 160 CFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKL 219

Query: 185 -KSLYEKEVFQKASKTLEK 202
            K   E E   +  K +E+
Sbjct: 220 HKMREEGEEEGEGEKLVEE 238

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 49.2 bits (117), Expect = 2e-06
 Identities = 13/90 (14%), Positives = 31/90 (34%), Gaps = 9/90 (10%)

Query: 85  FKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAY 144
           ++ K   +AI  +   + ++  +           K+             L+ +    +A 
Sbjct: 383 YQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKI---------AKMRLSKNGADSEAL 433

Query: 145 SRRATARKELGKLKESIEDSEFALRLEPQN 174
              A  ++   K++++ EDSE  L      
Sbjct: 434 HVLAFLQELNEKMQQADEDSERGLESGSLI 463

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 48.8 bits (116), Expect = 2e-06
 Identities = 19/146 (13%), Positives = 49/146 (33%), Gaps = 22/146 (15%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSP----------TAVAYANRAMAYLKLRRFQEAEDD 129
           L      + + + A++C  ++  L            + V + N A  Y  + R  + +  
Sbjct: 57  LAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIY 116

Query: 130 CTEALNLDDRYIKAYSRR----------ATARKELGKLKESIEDSEFALRLEPQNQEIKK 179
             +  ++ +++   Y                +    + + +    E AL  +P+N E   
Sbjct: 117 VDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTS 176

Query: 180 QLAEVKSLYEKEVFQKASKTLEKYGK 205
            LA     Y  + +  +   ++   +
Sbjct: 177 GLAIA--SYRLDNWPPSQNAIDPLRQ 200

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159

 Score = 58.0 bits (139), Expect = 2e-10
 Identities = 27/154 (17%), Positives = 51/154 (33%), Gaps = 24/154 (15%)

Query: 68  EESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-------------AVAYANRA 114
            +    A              ++ EA     R++ +S T             A  +A  A
Sbjct: 5   LKEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLA 64

Query: 115 MAYLKLRRFQEAEDDCTEALNLDDR-----------YIKAYSRRATARKELGKLKESIED 163
            A   LR F EA     +AL+  +R           +I A   RA A   LG+  E++ +
Sbjct: 65  EALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPE 124

Query: 164 SEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKAS 197
            +  + +  + +        +  +    + Q  +
Sbjct: 125 FKKVVEMIEERKGETPGKERMMEVAIDRIAQLGA 158

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 53.1 bits (128), Expect = 3e-09
 Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 2/71 (2%)

Query: 79  ELGNECFKQKKFKEAIDCYSRSIALSPT--AVAYANRAMAYLKLRRFQEAEDDCTEALNL 136
           +   E   Q   + A+      +   P     AY     AY KL  +Q+A ++   A+ L
Sbjct: 5   KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64

Query: 137 DDRYIKAYSRR 147
           +       +R+
Sbjct: 65  NPDSPALQARK 75

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 50.0 bits (120), Expect = 3e-08
 Identities = 14/85 (16%), Positives = 37/85 (43%), Gaps = 3/85 (3%)

Query: 112 NRAMAYLKLRRFQEAEDDCTEALNLD-DRYIKAYSRRATARKELGKLKESIEDSEFALRL 170
                 +     + A     E L  +     +AY     A ++LG  ++++ + + A+ L
Sbjct: 5   KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64

Query: 171 EPQNQEI--KKQLAEVKSLYEKEVF 193
            P +  +  +K + ++ + Y K+++
Sbjct: 65  NPDSPALQARKMVMDILNFYNKDMY 89

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.9 bits (139), Expect = 4e-09
 Identities = 65/433 (15%), Positives = 126/433 (29%), Gaps = 103/433 (23%)

Query: 75  TSEKELGN----ECFKQKKFKEAIDC-----YSRS---------IALSPTAVAYANRAMA 116
           T E +         F +  F +  DC       +S         I +S  AV+   R   
Sbjct: 11  TGEHQYQYKDILSVF-EDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW 69

Query: 117 YLKLRRFQEAEDDCTEALNLDDRYIKAYSR-RATARKELGKLKESIEDSEFALRLEPQNQ 175
            L  ++ +  +    E L ++ +++   S  +   R+     +  IE  +   RL   NQ
Sbjct: 70  TLLSKQEEMVQKFVEEVLRINYKFL--MSPIKTEQRQPSMMTRMYIEQRD---RLYNDNQ 124

Query: 176 EIKKQLAEVKSLYEKEVFQKASKTLEK------YGKSGMKVNGHEVRAVRNTIQKTGVAE 229
              K    V  L      ++A   L         G  G    G    A+ +      V  
Sbjct: 125 VFAKY--NVSRLQPYLKLRQALLELRPAKNVLIDGVLGS---GKTWVAL-DVCLSYKVQC 178

Query: 230 IQD-----LTISKKTENK-------NL--RDESKTEGQRDGSGANATHISGLDKR----- 270
             D     L +      +        L  + +     + D S      I  +        
Sbjct: 179 KMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL 238

Query: 271 -NHRTKKA--VLDASVQELAT-RA---------TSR--AVAEAAKNITPPKSAYEFEVSW 315
            +   +    VL  +VQ      A         T+R   V +     T    + +     
Sbjct: 239 KSKPYENCLLVLL-NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM- 296

Query: 316 RGFAGDHALQ--ARLLKAISPNALPQIFKNALSASILIDIVKVVATFFTGEVDLAIKYLE 373
                D       + L    P  LP   +  L+ +     + ++A      +       +
Sbjct: 297 -TLTPDEVKSLLLKYLD-CRPQDLP---REVLTTNPR--RLSIIAESIRDGLAT-WDNWK 348

Query: 374 YLTMVPRFDLVI-MCLSLADKADLRKVWDE--TFCNESTPI---------------EYAE 415
           ++    +   +I   L++ + A+ RK++D    F   S  I               +   
Sbjct: 349 HVN-CDKLTTIIESSLNVLEPAEYRKMFDRLSVF-PPSAHIPTILLSLIWFDVIKSDVMV 406

Query: 416 ILDNLRSKYCLSQ 428
           +++ L     + +
Sbjct: 407 VVNKLHKYSLVEK 419

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 54.7 bits (131), Expect = 2e-08
 Identities = 19/109 (17%), Positives = 42/109 (38%), Gaps = 1/109 (0%)

Query: 87  QKKFKEAIDCYSRSIALSP-TAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYS 145
            +K ++A   +         T +    +A  ++   R++ AE    EAL+ D  + +   
Sbjct: 179 GEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLI 238

Query: 146 RRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQ 194
                 + LGK  E        L+   ++    K+    ++ +++ V Q
Sbjct: 239 NLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYRAKENDFDRLVLQ 287

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 49.4 bits (117), Expect = 1e-06
 Identities = 15/114 (13%), Positives = 30/114 (26%), Gaps = 3/114 (2%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSPTAV-AYANRAMAYLKL--RRFQEAEDDCTEALNL 136
                 K  +   A     +       A       A   L     + Q+A     E  + 
Sbjct: 136 TVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK 195

Query: 137 DDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEK 190
               +   + +A      G+ + +    + AL  +  + E    L  +     K
Sbjct: 196 CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGK 249

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 41.3 bits (96), Expect = 3e-04
 Identities = 21/153 (13%), Positives = 44/153 (28%), Gaps = 8/153 (5%)

Query: 52  SRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYA 111
           SR    V+ +   +       + T      +  F  +    A+    +  +L       A
Sbjct: 79  SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSLE----CMA 134

Query: 112 NRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG--KLKESIEDSEFALR 169
                 LKL R   A  +  +  + D+         A      G  KL+++    +    
Sbjct: 135 MTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMAD 194

Query: 170 LEPQNQEIKKQLAEVKSLYEKEVFQKASKTLEK 202
                  +    A       +  ++ A   L++
Sbjct: 195 KCSPTLLLLNGQAAC--HMAQGRWEAAEGVLQE 225

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 55.1 bits (132), Expect = 2e-08
 Identities = 13/96 (13%), Positives = 33/96 (34%), Gaps = 4/96 (4%)

Query: 85  FKQKKFKEAIDCYSRSIALSP---TAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYI 141
             +K+           + L      ++ Y  +A++ L   +  E+       ++L+  ++
Sbjct: 252 LDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWL 311

Query: 142 KAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI 177
             Y       +  G  +E+ +    A  L P    +
Sbjct: 312 -NYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTL 346

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 48.2 bits (114), Expect = 3e-06
 Identities = 12/58 (20%), Positives = 18/58 (31%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLD 137
                  + K  E+    +  I L  + + Y      Y      +EA D    A NL 
Sbjct: 283 KAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 46.6 bits (110), Expect = 1e-05
 Identities = 16/99 (16%), Positives = 28/99 (28%), Gaps = 11/99 (11%)

Query: 85  FKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTE----------A 133
              K    A +     +  SP    A A +A+  +        ++               
Sbjct: 210 GDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269

Query: 134 LNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEP 172
           L   +     Y  +A +    GK  ES +     + LE 
Sbjct: 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM 308

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 52.4 bits (125), Expect = 1e-07
 Identities = 10/98 (10%), Positives = 32/98 (32%), Gaps = 7/98 (7%)

Query: 86  KQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAY 144
             +   + ++  +  +        A+ +R     + + +        + L  D R    +
Sbjct: 178 WLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVW 237

Query: 145 SRRATARKELGK------LKESIEDSEFALRLEPQNQE 176
           ++R               L+  ++ +   ++L P N+ 
Sbjct: 238 NQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNES 275

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 50.7 bits (122), Expect = 1e-07
 Identities = 20/128 (15%), Positives = 35/128 (27%), Gaps = 17/128 (13%)

Query: 74  ATSEKELGNECFKQKKFKEAIDCYSRSIAL-------SPTAVAYANRAMAYLKLRRFQEA 126
           + +   LG       +F EA   +             +    A     M       +  A
Sbjct: 26  SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAA 85

Query: 127 EDDCTEALNL-----DDRYIKA--YSRRATARKELGKLKESIEDSEFALRLEPQNQEIKK 179
                E   L     +D    +      AT     G L  + ++ E +L      Q+   
Sbjct: 86  RRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVY---AQQADD 142

Query: 180 QLAEVKSL 187
           Q+A   + 
Sbjct: 143 QVAIACAF 150

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 21/120 (17%), Positives = 44/120 (36%), Gaps = 14/120 (11%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSPT-----AVAYANRAMAYLKLRRFQEAEDDCTEAL 134
            G    K    +  +  +  ++ +        +  Y+    AY  L  + +A +     L
Sbjct: 15  EGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDL 74

Query: 135 NL----DDRYIKA--YSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLY 188
            L     D+  +A          K LG   E+I   +  L +   ++E+  ++ E ++LY
Sbjct: 75  TLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDI---SRELNDKVGEARALY 131

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 24/142 (16%), Positives = 43/142 (30%), Gaps = 24/142 (16%)

Query: 66  MNEESTPD-ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-------AVAYANRAMAY 117
           +  E     +    +LGN  F    + +A++ +   + L+ T       A A  N     
Sbjct: 38  VGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTL 97

Query: 118 LKLRRFQEAEDDCTEALNLDDRYIKAYSRRATAR---------KELGKLKESIEDSEFAL 168
             L  F EA   C   L++     +   +   AR            GK        +   
Sbjct: 98  KVLGNFDEAIVCCQRHLDI---SRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGE 154

Query: 169 RLEPQNQEIKKQLAEVKSLYEK 190
             E     ++  +      YE+
Sbjct: 155 FPEEVRDALQAAV----DFYEE 172

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 24/122 (19%), Positives = 51/122 (41%), Gaps = 16/122 (13%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALS-------PTAVAYANRAMAYLKLRRFQEAEDDCTE 132
           LGN  +    F++A+  + + + ++           AY+N   AY+ L  F+ A +   +
Sbjct: 193 LGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 252

Query: 133 ALN----LDDRYIKA--YSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKS 186
            L     L DR ++A            L   +++I+     L +    QE+  ++ E ++
Sbjct: 253 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI---AQELNDRIGEGRA 309

Query: 187 LY 188
            +
Sbjct: 310 CW 311

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 43.8 bits (104), Expect = 8e-05
 Identities = 22/122 (18%), Positives = 44/122 (36%), Gaps = 19/122 (15%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALS-------PTAVAYANRAMAYLKLRRFQEAEDDCTE 132
           LGN     + +++AID + + +A++           A  +   AY  L    +A     +
Sbjct: 273 LGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 332

Query: 133 ALN----LDDRYIKAYSRR--ATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKS 186
            L     + D+  +  +R   +  +  LG    +         +  +N EI   L  V+ 
Sbjct: 333 HLEISREVGDKSGELTARLNLSDLQMVLGLSYST------NNSIMSENTEIDSSLNGVRP 386

Query: 187 LY 188
             
Sbjct: 387 KL 388

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 20/120 (16%), Positives = 44/120 (36%), Gaps = 14/120 (11%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSPT-----AVAYANRAMAYLKLRRFQEAEDDCTEAL 134
            G    K    +  +  +  ++ +        +  Y+    AY  L  + +A +     L
Sbjct: 11  EGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDL 70

Query: 135 N----LDDRYIKA--YSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLY 188
                + D+  +A          K LG   E+I   +  L +   ++E+  ++ E ++LY
Sbjct: 71  TLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDI---SRELNDKVGEARALY 127

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 48.0 bits (115), Expect = 3e-06
 Identities = 25/142 (17%), Positives = 44/142 (30%), Gaps = 24/142 (16%)

Query: 66  MNEESTPD-ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-------AVAYANRAMAY 117
           +  E     +    +LGN  F    + +A++ +   + L+ T       A A  N     
Sbjct: 34  VGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTL 93

Query: 118 LKLRRFQEAEDDCTEALNLDDRYIKAYSRRATAR---------KELGKLKESIEDSEFAL 168
             L  F EA   C   L++     +   +   AR            GK        +   
Sbjct: 94  KVLGNFDEAIVCCQRHLDI---SRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGE 150

Query: 169 RLEPQNQEIKKQLAEVKSLYEK 190
             E     ++  +     LYE+
Sbjct: 151 FPEDVRNALQAAV----DLYEE 168

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 44.9 bits (107), Expect = 2e-05
 Identities = 25/122 (20%), Positives = 52/122 (42%), Gaps = 16/122 (13%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALS-------PTAVAYANRAMAYLKLRRFQEAEDDCTE 132
           LGN  +    F++A+  + + + ++           AY+N   AY+ L  F+ A +   +
Sbjct: 189 LGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 248

Query: 133 ALN----LDDRYIKA--YSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKS 186
            L     L DR ++A            L   +++I+     L +    QE+K ++ E ++
Sbjct: 249 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI---AQELKDRIGEGRA 305

Query: 187 LY 188
            +
Sbjct: 306 CW 307

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 40.3 bits (95), Expect = 8e-04
 Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 7/64 (10%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSP-------TAVAYANRAMAYLKLRRFQEAEDDCTE 132
           LGN     + +++AID + + +A++           A  +   AY  L    +A     +
Sbjct: 269 LGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 328

Query: 133 ALNL 136
            L +
Sbjct: 329 HLEI 332

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 49.9 bits (119), Expect = 2e-07
 Identities = 23/128 (17%), Positives = 44/128 (34%), Gaps = 8/128 (6%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSPTAV-AYANRAMAYLKL---RRFQEAEDDCTEALN 135
           LG     Q  +  ++  Y +++ L       YA  A             +      +AL 
Sbjct: 50  LGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALA 109

Query: 136 LDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQK 195
           LD   I A    A+         ++IE  +  + L        + +   +S+   ++ Q+
Sbjct: 110 LDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLV---ESINMAKLLQR 166

Query: 196 ASKTLEKY 203
            S  LE +
Sbjct: 167 RSD-LEHH 173

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 50.0 bits (120), Expect = 8e-07
 Identities = 23/133 (17%), Positives = 40/133 (30%), Gaps = 9/133 (6%)

Query: 66  MNEESTPD-ATSEKELGNECFKQKKFKEAIDCYSRSIAL-------SPTAVAYANRAMAY 117
              E     +    +LGN  F    + +A+  +   + L          A +  N     
Sbjct: 77  AGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTL 136

Query: 118 LKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI 177
             + RF EA   C   L L  R +        A   LG +  +               ++
Sbjct: 137 KVMGRFDEAAICCERHLTL-ARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDV 195

Query: 178 KKQLAEVKSLYEK 190
           K+ L      Y++
Sbjct: 196 KEALTRAVEFYQE 208

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 22/125 (17%), Positives = 49/125 (39%), Gaps = 22/125 (17%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIAL-------SPTAVAYANRAMAYLKLRRFQEAEDDCTE 132
           LGN  +    F+ AI+ +   + +       +    A +N   +++ L +F++A +    
Sbjct: 229 LGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288

Query: 133 ALNLDDRYIKAYSRRATAR---------KELGKLKESIEDSEFALRLEPQNQEIKKQLAE 183
            L L    ++   R   A+           L +   +IE     L +    QE+  ++ E
Sbjct: 289 TLAL---AVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAI---AQELGDRIGE 342

Query: 184 VKSLY 188
            ++ +
Sbjct: 343 ARACW 347

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 45.2 bits (108), Expect = 2e-05
 Identities = 28/109 (25%), Positives = 43/109 (39%), Gaps = 18/109 (16%)

Query: 72  PD-ATSEKELGNECFKQKKFKEAIDCYSRSIALS--------P-TAVAYANRAMAYLKLR 121
           PD AT    L      Q K+KEA    + ++A+         P  A    N A+ Y K  
Sbjct: 40  PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRG 99

Query: 122 RFQEAEDDCTEALNLDDR--------YIKAYSRRATARKELGKLKESIE 162
           +++EAE  C  AL + ++          K  +  A   +  GK +E   
Sbjct: 100 KYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEY 148

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 44.1 bits (105), Expect = 4e-05
 Identities = 26/119 (21%), Positives = 38/119 (31%), Gaps = 19/119 (15%)

Query: 72  PD-ATSEKELGNECFKQKKFKEAIDCYSRSIA-----LSP----TAVAYANRAMAYLKLR 121
           PD A     L   C  Q K +E    Y R++      L P     A    N A  YLK  
Sbjct: 124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQG 183

Query: 122 RFQEAEDDCTEALNLDDRYI---------KAYSRRATARKELGKLKESIEDSEFALRLE 171
           ++Q+AE    E L                  +       +   K ++S    E+    +
Sbjct: 184 KYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYK 242

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 45.2 bits (108), Expect = 2e-05
 Identities = 27/117 (23%), Positives = 38/117 (32%), Gaps = 19/117 (16%)

Query: 72  PD-ATSEKELGNECFKQKKFKEAIDCYSRSIA-----LSP----TAVAYANRAMAYLKLR 121
           PD A     L   C  Q K++E    Y R++      L P     A    N A  YLK  
Sbjct: 150 PDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQG 209

Query: 122 RFQEAEDDCTEALNLDDRYI---------KAYSRRATARKELGKLKESIEDSEFALR 169
           +F++AE    E L                  +       +  GK K+     E+   
Sbjct: 210 KFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGW 266

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 43.3 bits (103), Expect = 7e-05
 Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 18/109 (16%)

Query: 72  PD-ATSEKELGNECFKQKKFKEAIDCYSRSIALS--------P-TAVAYANRAMAYLKLR 121
           PD AT    L      Q K+K+A +  + ++A+         P  A    N A+ Y K  
Sbjct: 66  PDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRG 125

Query: 122 RFQEAEDDCTEALNLDDR--------YIKAYSRRATARKELGKLKESIE 162
           +++EAE  C  AL + ++          K  +  A   +  GK +E   
Sbjct: 126 KYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEY 174

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 40.6 bits (96), Expect = 7e-04
 Identities = 20/128 (15%), Positives = 46/128 (35%), Gaps = 25/128 (19%)

Query: 72  PD-ATSEKELGNECFKQKKFKEAIDCYSRSIALS--------P-TAVAYANRAMAYLKLR 121
           P    +   L  +   Q +++ A+    +++           P  A      A+ Y    
Sbjct: 24  PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQN 83

Query: 122 RFQEAEDDCTEALNLDDR--------YIKAYSRRATARKELGKLKESIEDSEFALRLEPQ 173
           ++++A +   +AL + ++             +  A    + GK KE       A  L  +
Sbjct: 84  KYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKE-------AEPLCKR 136

Query: 174 NQEIKKQL 181
             EI++++
Sbjct: 137 ALEIREKV 144

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 43.3 bits (103), Expect = 3e-05
 Identities = 24/124 (19%), Positives = 51/124 (41%), Gaps = 22/124 (17%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIAL-------SPTAVAYANRAMAYLKLRRFQEAEDDCTE 132
           LGN  +    F++A+  + + + +       +   +AY+N   AY+ L  F+ A +   +
Sbjct: 15  LGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKK 74

Query: 133 ALNLDDRYIKAYSRRATAR---------KELGKLKESIEDSEFALRLEPQNQEIKKQLAE 183
            L L     +   R   A+           L   +++I+     L +    QE+K ++ E
Sbjct: 75  TLLL---ARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI---AQELKDRIGE 128

Query: 184 VKSL 187
            ++ 
Sbjct: 129 GRAC 132

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 44.4 bits (105), Expect = 4e-05
 Identities = 18/168 (10%), Positives = 52/168 (30%), Gaps = 27/168 (16%)

Query: 51  YSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSP----- 105
           Y  +      +                          K++++AI  + ++ +++      
Sbjct: 173 YKEHEAYNIRLLQCHSL------------FATNFLDLKQYEDAISHFQKAYSMAEAEKQP 220

Query: 106 --TAVAYANRAMAYLKLRRFQEAEDDCTEALNLDD------RYIKAYSRRATARKELGKL 157
                   N  +      ++++A      A+ + +         +AY        +LGK+
Sbjct: 221 QLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKI 280

Query: 158 KESIEDSEFALRL--EPQNQEIKKQLAEVKSLYEKEVFQKASKTLEKY 203
            ++ E     +    +  +     +   +KSLY     ++A +    +
Sbjct: 281 DKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDF 328

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 41.7 bits (98), Expect = 3e-04
 Identities = 25/136 (18%), Positives = 51/136 (37%), Gaps = 12/136 (8%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSP-------TAVAYANRAMAYLKLRRFQEAEDDCTE 132
           +G     Q ++++AI  + R+IA+            AY      + KL +  +A +  ++
Sbjct: 230 IGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSK 289

Query: 133 ALN----LDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLY 188
            +       D    +      +    G  +E+I+     L  +    +++    +V   Y
Sbjct: 290 GMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYY 349

Query: 189 EKE-VFQKASKTLEKY 203
            +   FQKAS    K 
Sbjct: 350 HERKNFQKASAYFLKV 365

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 41.3 bits (97), Expect = 4e-04
 Identities = 20/115 (17%), Positives = 44/115 (38%), Gaps = 3/115 (2%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSPTA--VAYANRAMAYLKLRRFQEAEDDCTEALNLD 137
           +    +K  K  +A + +S+ +A S  A  V Y +       L      E+      +  
Sbjct: 270 ITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFL 329

Query: 138 DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEV 192
           +     Y+       ++ K     ++ + A     + +++++ +    SLYE EV
Sbjct: 330 ES-KMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQGGVSLYEIEV 383

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 12/112 (10%), Positives = 34/112 (30%), Gaps = 3/112 (2%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSPTA--VAYANRAMAYLKLRRFQEAEDDCTEALNLD 137
           L     K  + ++A       +          Y    +    + +    E    + L+  
Sbjct: 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYF 326

Query: 138 DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYE 189
           ++    ++      +    + ES    E A     +  + ++ + + + LY 
Sbjct: 327 EK-KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILKGECLYA 377

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	428
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.83
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.81
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.8
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.8
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.8
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.78
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.76
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.75
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.75
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.74
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.73
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.71
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.71
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.7
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.7
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.7
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.69
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.68
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.67
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.67
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.67
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.67
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.67
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.66
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.66
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.66
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.65
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.65
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.65
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.65
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.64
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.64
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.64
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.63
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.63
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.63
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.63
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.62
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.62
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.61
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.61
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.61
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.61
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.6
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.6
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.6
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.6
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.6
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.59
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.59
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.59
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.58
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.58
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.57
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.57
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.57
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.57
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.57
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.57
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.56
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.56
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.55
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.55
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.54
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.54
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.54
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.54
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.53
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.53
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.53
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.52
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.52
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.52
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.52
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.51
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.51
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.51
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.5
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.5
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.5
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.5
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.5
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.5
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.49
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.49
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.49
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.49
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.49
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.49
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.49
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.48
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.48
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.48
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.47
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.47
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.47
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.46
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.45
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.45
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.45
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.45
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.44
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.44
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.43
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.43
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.42
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.42
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.42
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.41
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.41
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.41
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.41
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.4
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.4
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.4
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.4
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.39
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.39
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.38
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.38
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.38
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.37
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.37
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.37
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.36
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.36
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.36
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.35
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.35
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.34
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.33
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.33
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.33
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.33
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.32
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.31
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.31
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.3
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.3
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.3
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.29
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.28
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.28
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.28
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.28
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.27
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.27
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.27
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.27
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.26
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.25
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.25
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.24
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.24
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.24
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.23
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.21
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.21
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.21
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.21
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.21
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.2
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.2
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.2
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.19
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.19
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.19
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.19
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.18
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.16
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.14
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.14
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.13
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.12
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.11
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.11
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.11
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.08
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.07
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.07
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.01
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.01
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.99
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.99
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.96
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.86
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.85
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.82
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.82
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.81
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.78
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.75
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.72
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.71
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.69
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.67
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.65
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.65
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.59
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.57
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.57
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.55
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.54
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.54
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.54
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	98.53
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	98.52
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.51
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.49
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.47
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.35
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.33
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.23
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.17
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.15
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.14
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	97.97
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.83
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	97.81
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.74
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.64
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.6
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.34
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	97.33
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.22
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.0
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	96.97
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	96.88
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	96.62
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	96.59
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	96.37
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	96.02
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	95.39
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	94.95
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	94.42
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	94.21
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	93.67
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	93.37
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	93.21
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	93.15
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	92.8
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	92.37
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	91.82
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	90.9
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	90.84
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	90.35
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	90.11
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	89.56
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	88.08
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	86.11
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	84.83
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	84.33
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	83.61
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	82.97
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	80.35

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.83  E-value=7.9e-20  Score=152.94  Aligned_cols=119  Identities=30%  Similarity=0.518  Sum_probs=110.5

Q ss_pred             hhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHH
Q 014256           64 SLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIK  142 (428)
Q Consensus        64 al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~  142 (428)
                      +..++|....+  ++++|+.|++.|+|++|+.+|+++++++|. +.+|+++|.+|..+|++++|+.+|++++.++|+++.
T Consensus         5 ~a~inP~~a~~--~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~   82 (126)
T 4gco_A            5 LAYINPELAQE--EKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIK   82 (126)
T ss_dssp             --CCCHHHHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHCHHHHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhH
Confidence            44567765555  889999999999999999999999999998 999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 014256          143 AYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEV  184 (428)
Q Consensus       143 a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a  184 (428)
                      +|+++|.++..+|++++|+..|+++++++|++.+++..+..+
T Consensus        83 a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~  124 (126)
T 4gco_A           83 GYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC  124 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence            999999999999999999999999999999999998777665

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.81  E-value=2.1e-19  Score=158.65  Aligned_cols=158  Identities=18%  Similarity=0.195  Sum_probs=148.1

Q ss_pred             hhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHH
Q 014256           40 SAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAY  117 (428)
Q Consensus        40 ~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~  117 (428)
                      .++..+|..| ..|++++|+..|++++..+|++..+  +..+|.+|...|++++|+..+.+++...|+ ..++.++|.++
T Consensus         6 ~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~--~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~   83 (184)
T 3vtx_A            6 TIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVET--LLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSAN   83 (184)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH--HHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence            4556677777 8899999999999999999998877  789999999999999999999999999998 99999999999


Q ss_pred             HHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH----------HHHHHHHHHH
Q 014256          118 LKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI----------KKQLAEVKSL  187 (428)
Q Consensus       118 ~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~----------~~~l~~a~~~  187 (428)
                      ...++++.|...+.+++.++|.+..++..+|.++..+|++++|+..|+++++++|++..+          .+++++|+..
T Consensus        84 ~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~  163 (184)
T 3vtx_A           84 FMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKY  163 (184)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999887          4678899999


Q ss_pred             HHHHHHhchhhh
Q 014256          188 YEKEVFQKASKT  199 (428)
Q Consensus       188 ~~~a~~~~~~~~  199 (428)
                      |+++++++|.++
T Consensus       164 ~~~al~~~p~~a  175 (184)
T 3vtx_A          164 FKKALEKEEKKA  175 (184)
T ss_dssp             HHHHHHTTHHHH
T ss_pred             HHHHHhCCccCH
Confidence            999999998765

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.80  E-value=3.5e-19  Score=162.78  Aligned_cols=162  Identities=19%  Similarity=0.160  Sum_probs=144.4

Q ss_pred             hhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHH
Q 014256           40 SAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAY  117 (428)
Q Consensus        40 ~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~  117 (428)
                      .++..+|..+ ..|++++|+..|++++..+|.+..+  +..+|.++...|++++|+.+|+++++++|+ +.+++++|.++
T Consensus         6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a--~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~   83 (217)
T 2pl2_A            6 QNPLRLGVQLYALGRYDAALTLFERALKENPQDPEA--LYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAY   83 (217)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            3444455566 8899999999999999999998877  779999999999999999999999999998 89999999999


Q ss_pred             HHh-----------cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH---------
Q 014256          118 LKL-----------RRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI---------  177 (428)
Q Consensus       118 ~~~-----------~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~---------  177 (428)
                      ..+           |++++|+..|.+++.++|+++.+++++|.++..+|++++|+..|+++++++ +++.+         
T Consensus        84 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~  162 (217)
T 2pl2_A           84 VALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYL  162 (217)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHH
T ss_pred             HHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHH
Confidence            999           999999999999999999999999999999999999999999999999999 77766         


Q ss_pred             -HHHHHHHHHHHHHHHHhchhhhHhhhc
Q 014256          178 -KKQLAEVKSLYEKEVFQKASKTLEKYG  204 (428)
Q Consensus       178 -~~~l~~a~~~~~~a~~~~~~~~~~~~~  204 (428)
                       .+++++|+..|++++..+|........
T Consensus       163 ~~g~~~~A~~~~~~al~~~P~~~~~~~~  190 (217)
T 2pl2_A          163 SMGRLDEALAQYAKALEQAPKDLDLRVR  190 (217)
T ss_dssp             HHTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence             456788899999999999887764433

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.80  E-value=1.7e-19  Score=193.24  Aligned_cols=162  Identities=22%  Similarity=0.219  Sum_probs=148.8

Q ss_pred             ccChhhhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHH
Q 014256           35 SSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYAN  112 (428)
Q Consensus        35 ~~~~~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~n  112 (428)
                      .+++..++..+|..| ..|++++|+.+|+++++++|++..+  +.++|.+|...|++++|+.+|+++++++|+ +.+|++
T Consensus         5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a--~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~n   82 (723)
T 4gyw_A            5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAA--HSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSN   82 (723)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            356778888899999 9999999999999999999998877  889999999999999999999999999999 999999


Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHH----------HH
Q 014256          113 RAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQ----------LA  182 (428)
Q Consensus       113 la~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~----------l~  182 (428)
                      +|.+|..+|++++|+..|++|++++|+++.+|+++|.++..+|++++|+..|+++++++|++..++.+          +.
T Consensus        83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~  162 (723)
T 4gyw_A           83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT  162 (723)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence            99999999999999999999999999999999999999999999999999999999999999988544          44


Q ss_pred             HHHHHHHHHHHhchhh
Q 014256          183 EVKSLYEKEVFQKASK  198 (428)
Q Consensus       183 ~a~~~~~~a~~~~~~~  198 (428)
                      +|.+.+++++.+.+..
T Consensus       163 ~A~~~~~kal~l~~~~  178 (723)
T 4gyw_A          163 DYDERMKKLVSIVADQ  178 (723)
T ss_dssp             THHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhChhH
Confidence            5677788887776543

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.80  E-value=2e-19  Score=155.01  Aligned_cols=138  Identities=12%  Similarity=0.018  Sum_probs=123.2

Q ss_pred             CCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhc
Q 014256           44 PSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLR  121 (428)
Q Consensus        44 ~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~  121 (428)
                      .+|..+ ..|++++|+..|.+++..+|....+  ++.+|.+|+..|+|++|+.+|+++++++|+ +.+|+++|.+|..+|
T Consensus         2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~--~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~   79 (150)
T 4ga2_A            2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIK--GFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE   79 (150)
T ss_dssp             -----CCCHHHHHHHHHHHHHHSCSHHHHHTT--HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HhHHHHHHcChHHHHHHHHHHhcccCcccHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            466777 7889999999999999999877666  779999999999999999999999999999 999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHhhCCCcHHHHHHHHH
Q 014256          122 RFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIED-SEFALRLEPQNQEIKKQLAE  183 (428)
Q Consensus       122 ~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~-~~~al~l~P~~~~~~~~l~~  183 (428)
                      ++++|+..|+++++++|+++.+++++|.++..+|++++|... ++++++++|+++.+......
T Consensus        80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~  142 (150)
T 4ga2_A           80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQ  142 (150)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence            999999999999999999999999999999999999877765 59999999999988654443

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.78  E-value=7.2e-19  Score=175.07  Aligned_cols=169  Identities=10%  Similarity=0.007  Sum_probs=149.6

Q ss_pred             cChhhhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcC-HHHHHHHHHHHHccCCc-HHHHHH
Q 014256           36 SSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKK-FKEAIDCYSRSIALSPT-AVAYAN  112 (428)
Q Consensus        36 ~~~~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~-~~~Ai~~y~~al~~~p~-~~~~~n  112 (428)
                      +++..++..++..+ ..|++++|+..|++++.++|.+..+  |..+|.++...|+ +++|+.+|++++.++|+ ..+|++
T Consensus        94 p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a--~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~  171 (382)
T 2h6f_A           94 DKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTV--WHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHH  171 (382)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHH--HHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence            44455556666666 7899999999999999999998877  8899999999997 99999999999999999 999999


Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHH-----------
Q 014256          113 RAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQL-----------  181 (428)
Q Consensus       113 la~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l-----------  181 (428)
                      +|.++..+|++++|+.+|++++.++|++..+|+++|.++..+|++++|+..|+++++++|++..++..+           
T Consensus       172 ~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~  251 (382)
T 2h6f_A          172 RRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYN  251 (382)
T ss_dssp             HHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSC
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcc
Confidence            999999999999999999999999999999999999999999999999999999999999999885443           


Q ss_pred             HHH-----HHHHHHHHHhchhhhHhhhccc
Q 014256          182 AEV-----KSLYEKEVFQKASKTLEKYGKS  206 (428)
Q Consensus       182 ~~a-----~~~~~~a~~~~~~~~~~~~~~~  206 (428)
                      .+|     +..|.+++.++|.+...+...+
T Consensus       252 ~eA~~~~el~~~~~Al~l~P~~~~a~~~l~  281 (382)
T 2h6f_A          252 DRAVLEREVQYTLEMIKLVPHNESAWNYLK  281 (382)
T ss_dssp             SHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence            333     4668888999988876554433

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.76  E-value=3.7e-18  Score=155.95  Aligned_cols=146  Identities=15%  Similarity=0.130  Sum_probs=135.5

Q ss_pred             ccChhhhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHh-----------cCHHHHHHHHHHHHc
Q 014256           35 SSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQ-----------KKFKEAIDCYSRSIA  102 (428)
Q Consensus        35 ~~~~~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~-----------g~~~~Ai~~y~~al~  102 (428)
                      .+++..++..+|.++ ..|++++|+..|++++..+|++..+  +..+|.++...           |++++|+.+|+++++
T Consensus        35 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a--~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~  112 (217)
T 2pl2_A           35 NPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGG--YMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAER  112 (217)
T ss_dssp             SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH--HHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH
Confidence            456667777777777 8999999999999999999998877  77999999999           999999999999999


Q ss_pred             cCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHH
Q 014256          103 LSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQL  181 (428)
Q Consensus       103 ~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l  181 (428)
                      ++|+ +.+|.++|.++..+|++++|+..|++++.++ +++.+++++|.++..+|++++|+..|+++++++|++..+...+
T Consensus       113 ~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~l  191 (217)
T 2pl2_A          113 VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRY  191 (217)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence            9999 9999999999999999999999999999999 9999999999999999999999999999999999999886554


Q ss_pred             HH
Q 014256          182 AE  183 (428)
Q Consensus       182 ~~  183 (428)
                      ..
T Consensus       192 a~  193 (217)
T 2pl2_A          192 AS  193 (217)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.75  E-value=8.4e-18  Score=145.38  Aligned_cols=115  Identities=12%  Similarity=0.057  Sum_probs=108.9

Q ss_pred             HHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 014256           59 SHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLD  137 (428)
Q Consensus        59 ~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~  137 (428)
                      ..|.+++.++|++..+  ++.+|.+++..|+|++|+.+|++++.++|+ +.+|+++|.+|..+|+|++|+..|++++.++
T Consensus        23 ~~l~~al~l~p~~~~~--~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~  100 (151)
T 3gyz_A           23 ATLKDINAIPDDMMDD--IYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG  100 (151)
T ss_dssp             CCTGGGCCSCHHHHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             CCHHHHhCCCHHHHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC
Confidence            3467778888887766  889999999999999999999999999999 9999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH
Q 014256          138 DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQ  175 (428)
Q Consensus       138 p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~  175 (428)
                      |+++.+|+++|.++..+|++++|+..|++++.+.|+.+
T Consensus       101 P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A          101 KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            99999999999999999999999999999999999865

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.75  E-value=1.3e-17  Score=152.41  Aligned_cols=136  Identities=18%  Similarity=0.166  Sum_probs=124.5

Q ss_pred             hhhcCCCccc-cCCCCcchHHHHHhhhhcCC-CCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHH
Q 014256           40 SAKKPSPSGN-SYSRNYDPVSHISSSLMNEE-STPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMA  116 (428)
Q Consensus        40 ~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p-~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~  116 (428)
                      .++...|..| ..|++++|+..|.+++..+| .+..+  ++.+|.+++..|+|++|+.+|.+++..+|+ ..+|.++|.+
T Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~   85 (228)
T 4i17_A            8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVT--AYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA   85 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHH--HHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence            3444556666 88999999999999999998 66655  678999999999999999999999999999 8899999999


Q ss_pred             HHHhcCHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--cHHH
Q 014256          117 YLKLRRFQEAEDDCTEALNLDDRYI-------KAYSRRATARKELGKLKESIEDSEFALRLEPQ--NQEI  177 (428)
Q Consensus       117 ~~~~~~~~eA~~~~~~al~l~p~~~-------~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~--~~~~  177 (428)
                      |..+|++++|+..|++++.++|+++       .+++++|.++..+|++++|+..|+++++++|+  +..+
T Consensus        86 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  155 (228)
T 4i17_A           86 YRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDA  155 (228)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHH
T ss_pred             HHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHH
Confidence            9999999999999999999999998       67999999999999999999999999999999  6665

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.74  E-value=1.5e-17  Score=142.95  Aligned_cols=131  Identities=13%  Similarity=0.061  Sum_probs=118.4

Q ss_pred             hHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 014256           57 PVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALN  135 (428)
Q Consensus        57 Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~  135 (428)
                      +...|.+++..+|.+..+  ++.+|.+++..|+|++|+.+|.+++.++|+ +.+|+++|.+|..+|+|++|+..|.+++.
T Consensus         6 ~~~~~~~al~~~p~~~~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   83 (148)
T 2vgx_A            6 GGGTIAMLNEISSDTLEQ--LYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV   83 (148)
T ss_dssp             CCCSHHHHTTCCHHHHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHcCCHhhHHH--HHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            345688999999887666  789999999999999999999999999998 99999999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHH
Q 014256          136 LDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYE  189 (428)
Q Consensus       136 l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~  189 (428)
                      ++|+++.+++++|.++..+|++++|+..|++++.+.|+++........+...+.
T Consensus        84 l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~  137 (148)
T 2vgx_A           84 MDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLE  137 (148)
T ss_dssp             HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred             cCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHHHH
Confidence            999999999999999999999999999999999999988776555555555443

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.73  E-value=1.3e-17  Score=144.15  Aligned_cols=117  Identities=21%  Similarity=0.175  Sum_probs=107.6

Q ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---
Q 014256           73 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-------------AVAYANRAMAYLKLRRFQEAEDDCTEALNL---  136 (428)
Q Consensus        73 ~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-------------~~~~~nla~~~~~~~~~~eA~~~~~~al~l---  136 (428)
                      .+..++++|+.+++.|+|++|+.+|+++|+++|+             +.+|.|+|.++.++|+|++|+.+|++||.+   
T Consensus        10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~   89 (159)
T 2hr2_A           10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   89 (159)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence            4556899999999999999999999999999986             238999999999999999999999999999   


Q ss_pred             ----CCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHH
Q 014256          137 ----DDRYIKAY----SRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYE  189 (428)
Q Consensus       137 ----~p~~~~a~----~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~  189 (428)
                          +|+++++|    +++|.++..+|++++|+.+|+++++++|++..+...+..+.+...
T Consensus        90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~  150 (159)
T 2hr2_A           90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAI  150 (159)
T ss_dssp             HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHH
T ss_pred             cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence                99999999    999999999999999999999999999999888777777666544

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.71  E-value=1.9e-16  Score=137.20  Aligned_cols=118  Identities=32%  Similarity=0.439  Sum_probs=107.7

Q ss_pred             chHHHHHHHHHHHHHhcCHHHHHHHHHHHHcc------------------CCc-HHHHHHHHHHHHHhcCHHHHHHHHHH
Q 014256           72 PDATSEKELGNECFKQKKFKEAIDCYSRSIAL------------------SPT-AVAYANRAMAYLKLRRFQEAEDDCTE  132 (428)
Q Consensus        72 ~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~------------------~p~-~~~~~nla~~~~~~~~~~eA~~~~~~  132 (428)
                      ..+..++.+|+.+++.|+|++|+.+|.+++.+                  +|. ..+|+++|.||+.+|+|++|+.+|++
T Consensus         9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~   88 (162)
T 3rkv_A            9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE   88 (162)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            34566899999999999999999999999999                  666 78999999999999999999999999


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH-HHHHHHHHHHHHHH
Q 014256          133 ALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQ-EIKKQLAEVKSLYE  189 (428)
Q Consensus       133 al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~-~~~~~l~~a~~~~~  189 (428)
                      ++.++|+++.+|+++|.++..+|++++|+.+|++++.++|++. .+...+..+.....
T Consensus        89 al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~  146 (162)
T 3rkv_A           89 VLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRA  146 (162)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH
T ss_pred             HHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999998 66666766665443

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.71  E-value=1.6e-16  Score=132.79  Aligned_cols=109  Identities=29%  Similarity=0.443  Sum_probs=98.7

Q ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC-------HHHH
Q 014256           73 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY-------IKAY  144 (428)
Q Consensus        73 ~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~-------~~a~  144 (428)
                      .+..++++|+.+++.|+|++|+.+|+++++++|+ +.+|+++|.+|+.+|+|++|+.+|.+++.++|++       ..++
T Consensus         7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~   86 (127)
T 4gcn_A            7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM   86 (127)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence            3556899999999999999999999999999999 9999999999999999999999999999999876       4689


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 014256          145 SRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLA  182 (428)
Q Consensus       145 ~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~  182 (428)
                      +++|.++..+|++++|+..|++++.+.|+ ++....+.
T Consensus        87 ~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~  123 (127)
T 4gcn_A           87 SRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVK  123 (127)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHH
Confidence            99999999999999999999999999985 44444433

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.70  E-value=1e-16  Score=136.09  Aligned_cols=129  Identities=15%  Similarity=0.081  Sum_probs=115.2

Q ss_pred             HHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 014256           59 SHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLD  137 (428)
Q Consensus        59 ~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~  137 (428)
                      ..|.+++..+|.+..+  ++.+|..++..|+|++|+.+|.+++..+|+ +.+|+++|.+|..+|+|++|+..|++++.++
T Consensus         5 ~~l~~al~~~p~~~~~--~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~   82 (142)
T 2xcb_A            5 GTLAMLRGLSEDTLEQ--LYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD   82 (142)
T ss_dssp             ----CCTTCCHHHHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             hhHHHHHcCCHHHHHH--HHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            5678888888876666  789999999999999999999999999998 9999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHH
Q 014256          138 DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYE  189 (428)
Q Consensus       138 p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~  189 (428)
                      |+++.+++++|.++..+|++++|+..|++++.++|+++........+...+.
T Consensus        83 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~  134 (142)
T 2xcb_A           83 INEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLE  134 (142)
T ss_dssp             TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999988877666666655554

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.70  E-value=9.5e-17  Score=141.43  Aligned_cols=140  Identities=19%  Similarity=0.231  Sum_probs=131.3

Q ss_pred             ccChhhhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHH
Q 014256           35 SSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYAN  112 (428)
Q Consensus        35 ~~~~~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~n  112 (428)
                      .+++..++..+|.+| ..|++++|+..+.+++...|....+  +..+|.++...++++.|+..+.+++.++|. ..++..
T Consensus        35 ~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~  112 (184)
T 3vtx_A           35 DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEA--YYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYK  112 (184)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHH
Confidence            456667777888888 9999999999999999999998777  779999999999999999999999999999 999999


Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q 014256          113 RAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE  176 (428)
Q Consensus       113 la~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~  176 (428)
                      +|.+|..+|+|++|+..|+++++++|.++.+++++|.++..+|++++|+..|+++++++|+++.
T Consensus       113 lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a~  176 (184)
T 3vtx_A          113 LGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAK  176 (184)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHHH
T ss_pred             HHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCHH
Confidence            9999999999999999999999999999999999999999999999999999999999997653

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.70  E-value=4.3e-16  Score=128.82  Aligned_cols=113  Identities=29%  Similarity=0.476  Sum_probs=107.0

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 014256           74 ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARK  152 (428)
Q Consensus        74 a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~  152 (428)
                      +..++.+|..++..|+|++|+.+|.+++.++|+ +.+|+++|.+|..+|+|++|+.+|++++.++|+++.+++++|.++.
T Consensus         4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~   83 (126)
T 3upv_A            4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI   83 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            445889999999999999999999999999998 9999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhC------CCcHHHHHHHHHHHH
Q 014256          153 ELGKLKESIEDSEFALRLE------PQNQEIKKQLAEVKS  186 (428)
Q Consensus       153 ~lg~~~eA~~~~~~al~l~------P~~~~~~~~l~~a~~  186 (428)
                      .+|++++|+..|++++.++      |++..+...+..+..
T Consensus        84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~  123 (126)
T 3upv_A           84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ  123 (126)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred             HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence            9999999999999999999      998888877776654

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.69  E-value=7.8e-17  Score=164.83  Aligned_cols=162  Identities=14%  Similarity=0.126  Sum_probs=133.1

Q ss_pred             ChhhhhcCCCccc-cCCCC-cchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCcHHHHHHHH
Q 014256           37 SLKSAKKPSPSGN-SYSRN-YDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRA  114 (428)
Q Consensus        37 ~~~~a~~~~~~~y-~~g~~-~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~~~~~~nla  114 (428)
                      ....++..+|.+| ..|++ ++|+.+|++++..+|.+..+  +..+|.+|+..|+|++|+.+|+++++++|+..++.++|
T Consensus       100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a--~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~lg  177 (474)
T 4abn_A          100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEA--WNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLS  177 (474)
T ss_dssp             CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHHHHHHH
Confidence            3344555566666 78888 88889999988888887766  77888888888888888888888888888877888888


Q ss_pred             HHHHHh---------cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHhhCC---Cc
Q 014256          115 MAYLKL---------RRFQEAEDDCTEALNLDDRYIKAYSRRATARKEL--------GKLKESIEDSEFALRLEP---QN  174 (428)
Q Consensus       115 ~~~~~~---------~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~l--------g~~~eA~~~~~~al~l~P---~~  174 (428)
                      .+|..+         |++++|+..|.+++.++|+++.+|+++|.++..+        |++++|+..|+++++++|   ++
T Consensus       178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~  257 (474)
T 4abn_A          178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSN  257 (474)
T ss_dssp             HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGC
T ss_pred             HHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccC
Confidence            888888         8888888888888888888888888888888888        888888888888888888   77


Q ss_pred             HHH----------HHHHHHHHHHHHHHHHhchhhhH
Q 014256          175 QEI----------KKQLAEVKSLYEKEVFQKASKTL  200 (428)
Q Consensus       175 ~~~----------~~~l~~a~~~~~~a~~~~~~~~~  200 (428)
                      ..+          .+++++|...|++++.++|....
T Consensus       258 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~  293 (474)
T 4abn_A          258 PDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPE  293 (474)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence            765          35577888888888888877654

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.68  E-value=5.4e-16  Score=144.85  Aligned_cols=161  Identities=13%  Similarity=0.072  Sum_probs=139.0

Q ss_pred             hhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCch-HHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc----HHHHHHH
Q 014256           40 SAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPD-ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANR  113 (428)
Q Consensus        40 ~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~-a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~nl  113 (428)
                      .++-..|..+ ..|++++|+..|++++...|.+.. ...++.+|.+++..|+|++|+..|++++..+|+    +.+++++
T Consensus        16 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l   95 (261)
T 3qky_A           16 QEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYER   95 (261)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHH
Confidence            3444445555 889999999999999999998722 334889999999999999999999999999884    6789999


Q ss_pred             HHHHHH--------hcCHHHHHHHHHHHHhcCCCCHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHH
Q 014256          114 AMAYLK--------LRRFQEAEDDCTEALNLDDRYIKAY-----------------SRRATARKELGKLKESIEDSEFAL  168 (428)
Q Consensus       114 a~~~~~--------~~~~~eA~~~~~~al~l~p~~~~a~-----------------~~lg~~~~~lg~~~eA~~~~~~al  168 (428)
                      |.+++.        +|++++|+..|++++..+|++..+.                 +.+|.++..+|++++|+..|++++
T Consensus        96 g~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l  175 (261)
T 3qky_A           96 AMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVF  175 (261)
T ss_dssp             HHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            999999        9999999999999999999986655                 889999999999999999999999


Q ss_pred             hhCCCcH---HH----------H----------HHHHHHHHHHHHHHHhchhhhH
Q 014256          169 RLEPQNQ---EI----------K----------KQLAEVKSLYEKEVFQKASKTL  200 (428)
Q Consensus       169 ~l~P~~~---~~----------~----------~~l~~a~~~~~~a~~~~~~~~~  200 (428)
                      ...|++.   .+          .          +++++|+..|++++...|.+..
T Consensus       176 ~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~  230 (261)
T 3qky_A          176 DAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPL  230 (261)
T ss_dssp             HHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTH
T ss_pred             HHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChH
Confidence            9999843   22          1          6678899999999998887754

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.67  E-value=9e-17  Score=145.70  Aligned_cols=148  Identities=11%  Similarity=0.027  Sum_probs=126.3

Q ss_pred             cCCCCcchHHHHHhhhhcCCCCchHHHHHH----------------HHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHH
Q 014256           50 SYSRNYDPVSHISSSLMNEESTPDATSEKE----------------LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYAN  112 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~----------------lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~n  112 (428)
                      ..|++++|+..|.+++..+|.+..+  ++.                +|.+|...|+|++|+.+|+++++++|+ ..++++
T Consensus        16 ~~g~~~~A~~~~~~al~~~p~~~~~--~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~   93 (208)
T 3urz_A           16 EAGQNGQAVSYFRQTIALNIDRTEM--YYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEA   93 (208)
T ss_dssp             HTTCHHHHHHHHHHHHHHCHHHHHH--HHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHhCCCChHH--HHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence            7899999999999999999987776  667                999999999999999999999999999 999999


Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhCCCcHH---------HHHHH
Q 014256          113 RAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGK--LKESIEDSEFALRLEPQNQE---------IKKQL  181 (428)
Q Consensus       113 la~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~--~~eA~~~~~~al~l~P~~~~---------~~~~l  181 (428)
                      +|.+|..+|++++|+..|++++.++|+++.+++++|.++...|.  ...+...+.+++...|....         ..+++
T Consensus        94 lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~  173 (208)
T 3urz_A           94 CAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRY  173 (208)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCH
Confidence            99999999999999999999999999999999999999987765  45667777777654432211         13568


Q ss_pred             HHHHHHHHHHHHhchhhh
Q 014256          182 AEVKSLYEKEVFQKASKT  199 (428)
Q Consensus       182 ~~a~~~~~~a~~~~~~~~  199 (428)
                      .+|+..|++++.++|...
T Consensus       174 ~~A~~~~~~al~l~P~~~  191 (208)
T 3urz_A          174 EKARNSLQKVILRFPSTE  191 (208)
T ss_dssp             HHHHHHHHHHTTTSCCHH
T ss_pred             HHHHHHHHHHHHhCCCHH
Confidence            899999999999998654

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.67  E-value=1.6e-16  Score=145.03  Aligned_cols=142  Identities=14%  Similarity=0.142  Sum_probs=122.1

Q ss_pred             hhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-H-------HHH
Q 014256           40 SAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-A-------VAY  110 (428)
Q Consensus        40 ~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~-------~~~  110 (428)
                      .+...+|.+| ..|++++|+.+|++++..+|.+..+  +..+|.++...|+|++|+.+|++++.++|+ .       .+|
T Consensus        43 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~--~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~  120 (228)
T 4i17_A           43 VTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANA--YIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYY  120 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHH--HHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence            3444467777 8999999999999999999997766  889999999999999999999999999998 5       669


Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCH---------------------------HHHH
Q 014256          111 ANRAMAYLKLRRFQEAEDDCTEALNLDDR--YIKAYSRRATARKELGKL---------------------------KESI  161 (428)
Q Consensus       111 ~nla~~~~~~~~~~eA~~~~~~al~l~p~--~~~a~~~lg~~~~~lg~~---------------------------~eA~  161 (428)
                      .++|.++..+|++++|+..|++++.++|+  ++.+++++|.++..+|+.                           ++|+
T Consensus       121 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~  200 (228)
T 4i17_A          121 LKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAV  200 (228)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999  999999999999988877                           6666


Q ss_pred             HHHHHHHhhCCCcHHHHHHHHH
Q 014256          162 EDSEFALRLEPQNQEIKKQLAE  183 (428)
Q Consensus       162 ~~~~~al~l~P~~~~~~~~l~~  183 (428)
                      ..|+++++++|++..+...+..
T Consensus       201 ~~~~~a~~l~p~~~~~~~~l~~  222 (228)
T 4i17_A          201 DYLGEAVTLSPNRTEIKQMQDQ  222 (228)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHhhcCCCCHHHHHHHHH
Confidence            6666666666666655544443

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.67  E-value=1.2e-16  Score=133.39  Aligned_cols=116  Identities=15%  Similarity=0.179  Sum_probs=106.9

Q ss_pred             hccChhhhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHH
Q 014256           34 VSSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYA  111 (428)
Q Consensus        34 ~~~~~~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~  111 (428)
                      ..++..+++...|..| ..|+|++|+..|++++..+|.+..+  +..+|.+|+..|++++|+.+|+++++++|+ ..+|+
T Consensus         8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~--~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~   85 (126)
T 4gco_A            8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAIL--YSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI   85 (126)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH--HHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence            3456666777777777 9999999999999999999998777  889999999999999999999999999999 99999


Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 014256          112 NRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATAR  151 (428)
Q Consensus       112 nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~  151 (428)
                      ++|.+|..+|+|++|+.+|+++++++|++..++..++.++
T Consensus        86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A           86 RKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL  125 (126)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence            9999999999999999999999999999999999998764

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.67  E-value=3.6e-16  Score=167.49  Aligned_cols=132  Identities=20%  Similarity=0.266  Sum_probs=123.0

Q ss_pred             CCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHH
Q 014256           68 EESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSR  146 (428)
Q Consensus        68 ~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~  146 (428)
                      .|++..+  +.++|++|..+|+|++|+.+|+++++++|+ +.+|+++|.+|..+|++++|+..|++|++++|+++.+|++
T Consensus         5 ~P~~a~a--l~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~n   82 (723)
T 4gyw_A            5 CPTHADS--LNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSN   82 (723)
T ss_dssp             -CHHHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCCcHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            4555555  889999999999999999999999999999 9999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH----------HHHHHHHHHHHHHHHHhchhhhHh
Q 014256          147 RATARKELGKLKESIEDSEFALRLEPQNQEI----------KKQLAEVKSLYEKEVFQKASKTLE  201 (428)
Q Consensus       147 lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~----------~~~l~~a~~~~~~a~~~~~~~~~~  201 (428)
                      +|.++..+|++++|+..|+++++++|++..+          .+++++|+..|+++++++|.....
T Consensus        83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a  147 (723)
T 4gyw_A           83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDA  147 (723)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Confidence            9999999999999999999999999999887          356889999999999999987653

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.67  E-value=1.4e-16  Score=158.51  Aligned_cols=149  Identities=9%  Similarity=0.047  Sum_probs=133.5

Q ss_pred             hccChhhhhcCCCccc-cCCC-CcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHH
Q 014256           34 VSSSLKSAKKPSPSGN-SYSR-NYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAY  110 (428)
Q Consensus        34 ~~~~~~~a~~~~~~~y-~~g~-~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~  110 (428)
                      ..+++..++..+|.+| ..|+ +++|+.+|++++.++|++..+  |..+|.++...|+|++|+.+|++++.++|+ ..+|
T Consensus       126 l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a--~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~  203 (382)
T 2h6f_A          126 LNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQV--WHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAW  203 (382)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHH
T ss_pred             hCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHH--HHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHH
Confidence            3455556666666677 7886 999999999999999998877  889999999999999999999999999999 9999


Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-cCCHHHH-----HHHHHHHHhhCCCcHHHHHHHHHH
Q 014256          111 ANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKE-LGKLKES-----IEDSEFALRLEPQNQEIKKQLAEV  184 (428)
Q Consensus       111 ~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~-lg~~~eA-----~~~~~~al~l~P~~~~~~~~l~~a  184 (428)
                      +++|.++..+|++++|+.+|++++.++|++..+|+++|.++.. .|.+++|     +..|++++.++|++..++..+..+
T Consensus       204 ~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~l  283 (382)
T 2h6f_A          204 QHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGI  283 (382)
T ss_dssp             HHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999 5554888     599999999999999887655543

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.66  E-value=7.3e-16  Score=140.72  Aligned_cols=161  Identities=14%  Similarity=0.096  Sum_probs=113.6

Q ss_pred             hhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHH
Q 014256           40 SAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAY  117 (428)
Q Consensus        40 ~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~  117 (428)
                      .++..++.+| ..|++++|+..|.+++..+|....+  +..+|.++...|++++|+.+|.+++..+|. ..++.++|.++
T Consensus        58 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~  135 (243)
T 2q7f_A           58 IPYINFANLLSSVNELERALAFYDKALELDSSAATA--YYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVL  135 (243)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHH--HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            3444445555 6777777777777777777765544  667777777777777777777777777776 66777777777


Q ss_pred             HHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHH----------HHHHHHHHH
Q 014256          118 LKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK----------KQLAEVKSL  187 (428)
Q Consensus       118 ~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~----------~~l~~a~~~  187 (428)
                      ...|++++|+..+.+++.++|.++.+++.+|.++...|++++|+..|++++.+.|++..+.          +++.+|...
T Consensus       136 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~  215 (243)
T 2q7f_A          136 VKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEM  215 (243)
T ss_dssp             HHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHH
T ss_pred             HHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHH
Confidence            7777777777777777777777777777777777777777777777777777777766552          334566667


Q ss_pred             HHHHHHhchhhhHhh
Q 014256          188 YEKEVFQKASKTLEK  202 (428)
Q Consensus       188 ~~~a~~~~~~~~~~~  202 (428)
                      +++++..+|......
T Consensus       216 ~~~~~~~~p~~~~~~  230 (243)
T 2q7f_A          216 LDKAIDIQPDHMLAL  230 (243)
T ss_dssp             HHHHHHHCTTCHHHH
T ss_pred             HHHHHccCcchHHHH
Confidence            777777766655543

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.66  E-value=6.4e-16  Score=152.30  Aligned_cols=164  Identities=24%  Similarity=0.270  Sum_probs=110.3

Q ss_pred             ccChhhhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHH
Q 014256           35 SSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYAN  112 (428)
Q Consensus        35 ~~~~~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~n  112 (428)
                      .++...++..+|..| ..|++++|+..|++++..+|.+..+  +..+|.++...|++++|+..|.+++.++|+ ..++.+
T Consensus       165 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~--~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  242 (388)
T 1w3b_A          165 QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDA--YINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGN  242 (388)
T ss_dssp             CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH--HHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHH
Confidence            344445555566666 6677777777777777777766555  556777777777777777777777777766 666677


Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHH----------HHHH
Q 014256          113 RAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK----------KQLA  182 (428)
Q Consensus       113 la~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~----------~~l~  182 (428)
                      +|.+|..+|++++|+..|.+++.++|+++.++.++|.++...|++++|+..|++++.+.|.+..+.          ++++
T Consensus       243 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~  322 (388)
T 1w3b_A          243 LACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIE  322 (388)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHH
Confidence            777777777777777777777777777777777777777777777777777777777777665542          3456


Q ss_pred             HHHHHHHHHHHhchhhhH
Q 014256          183 EVKSLYEKEVFQKASKTL  200 (428)
Q Consensus       183 ~a~~~~~~a~~~~~~~~~  200 (428)
                      +|...+++++...|....
T Consensus       323 ~A~~~~~~al~~~p~~~~  340 (388)
T 1w3b_A          323 EAVRLYRKALEVFPEFAA  340 (388)
T ss_dssp             HHHHHHHHHTTSCTTCHH
T ss_pred             HHHHHHHHHHhcCCCcHH
Confidence            666666666666665443

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.66  E-value=1.2e-15  Score=132.62  Aligned_cols=155  Identities=15%  Similarity=0.195  Sum_probs=138.6

Q ss_pred             cCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHh
Q 014256           43 KPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKL  120 (428)
Q Consensus        43 ~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~  120 (428)
                      ..++..+ ..|++++|+..|.+++...|....+  +..+|.++...|++++|+.+|.+++..+|. ..++.++|.++...
T Consensus        12 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~   89 (186)
T 3as5_A           12 RDKGISHAKAGRYSQAVMLLEQVYDADAFDVDV--ALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQV   89 (186)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhCccChHH--HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Confidence            3445555 7799999999999999999887655  789999999999999999999999999998 88999999999999


Q ss_pred             cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH----------HHHHHHHHHHHHH
Q 014256          121 RRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI----------KKQLAEVKSLYEK  190 (428)
Q Consensus       121 ~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~----------~~~l~~a~~~~~~  190 (428)
                      |++++|+..+.+++..+|.++.+++.+|.++...|++++|+..+++++.+.|.+..+          .+++.+|...+++
T Consensus        90 ~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  169 (186)
T 3as5_A           90 QKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKK  169 (186)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999998766          3456778888888


Q ss_pred             HHHhchhhh
Q 014256          191 EVFQKASKT  199 (428)
Q Consensus       191 a~~~~~~~~  199 (428)
                      ++...|...
T Consensus       170 ~~~~~~~~~  178 (186)
T 3as5_A          170 ANELDEGAS  178 (186)
T ss_dssp             HHHHHHCCC
T ss_pred             HHHcCCCch
Confidence            887776544

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.65  E-value=2.5e-15  Score=131.65  Aligned_cols=127  Identities=17%  Similarity=0.173  Sum_probs=116.2

Q ss_pred             ccCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHH-HHHhcCH--H
Q 014256           49 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMA-YLKLRRF--Q  124 (428)
Q Consensus        49 y~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~-~~~~~~~--~  124 (428)
                      +..|++++|+..|.+++..+|.+..+  +..+|.+|+..|+|++|+.+|.+++.++|+ +.++.++|.+ +...|++  +
T Consensus        21 ~~~~~~~~A~~~~~~al~~~p~~~~~--~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~   98 (177)
T 2e2e_A           21 ASQQNPEAQLQALQDKIRANPQNSEQ--WALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA   98 (177)
T ss_dssp             C-----CCCCHHHHHHHHHCCSCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred             hhccCHHHHHHHHHHHHHhCCCcHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence            47899999999999999999988766  889999999999999999999999999998 8999999999 8899999  9


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH
Q 014256          125 EAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI  177 (428)
Q Consensus       125 eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~  177 (428)
                      +|+..|.+++.++|+++.+++.+|.++..+|++++|+..|++++.++|++...
T Consensus        99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  151 (177)
T 2e2e_A           99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINR  151 (177)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccH
Confidence            99999999999999999999999999999999999999999999999988544

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.65  E-value=6.3e-16  Score=152.33  Aligned_cols=165  Identities=18%  Similarity=0.162  Sum_probs=150.2

Q ss_pred             ccChhhhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHH
Q 014256           35 SSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYAN  112 (428)
Q Consensus        35 ~~~~~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~n  112 (428)
                      .++...+...++..+ ..|++++|+..|.+++..+|.+..+  +..+|.++...|++++|+.+|++++.++|+ ..+|.+
T Consensus       131 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~--~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  208 (388)
T 1w3b_A          131 NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVA--WSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYIN  208 (388)
T ss_dssp             CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence            456666677788888 8899999999999999999987766  779999999999999999999999999999 889999


Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH----------HHHHH
Q 014256          113 RAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI----------KKQLA  182 (428)
Q Consensus       113 la~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~----------~~~l~  182 (428)
                      +|.++...|++++|+..|.+++.++|+++.++.++|.++...|++++|+..|++++.++|+++.+          .+++.
T Consensus       209 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~  288 (388)
T 1w3b_A          209 LGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVA  288 (388)
T ss_dssp             HHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Confidence            99999999999999999999999999999999999999999999999999999999999998876          35678


Q ss_pred             HHHHHHHHHHHhchhhhHh
Q 014256          183 EVKSLYEKEVFQKASKTLE  201 (428)
Q Consensus       183 ~a~~~~~~a~~~~~~~~~~  201 (428)
                      +|...|++++...|.+...
T Consensus       289 ~A~~~~~~al~~~p~~~~~  307 (388)
T 1w3b_A          289 EAEDCYNTALRLCPTHADS  307 (388)
T ss_dssp             HHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHhhCcccHHH
Confidence            8999999999998877653

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.65  E-value=2.6e-15  Score=137.08  Aligned_cols=158  Identities=15%  Similarity=0.152  Sum_probs=130.3

Q ss_pred             hhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHH
Q 014256           41 AKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYL  118 (428)
Q Consensus        41 a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~  118 (428)
                      ++..+|..+ ..|++++|+..|.+++..+|....+  +..+|.++...|++++|+.+|.+++..+|. ..++.++|.++.
T Consensus        25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~--~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~  102 (243)
T 2q7f_A           25 TGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIP--YINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYV  102 (243)
T ss_dssp             -----------------CCTTHHHHHTTCTTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence            445566666 8899999999999999999987766  779999999999999999999999999998 899999999999


Q ss_pred             HhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH----------HHHHHHHHHHH
Q 014256          119 KLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI----------KKQLAEVKSLY  188 (428)
Q Consensus       119 ~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~----------~~~l~~a~~~~  188 (428)
                      .+|++++|+..+.+++..+|.+..+++.+|.++...|++++|+..+++++.+.|++..+          .+++.+|...+
T Consensus       103 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  182 (243)
T 2q7f_A          103 VKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQF  182 (243)
T ss_dssp             HTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999998876          34566778888


Q ss_pred             HHHHHhchhhhH
Q 014256          189 EKEVFQKASKTL  200 (428)
Q Consensus       189 ~~a~~~~~~~~~  200 (428)
                      .+++...|....
T Consensus       183 ~~~~~~~~~~~~  194 (243)
T 2q7f_A          183 AAVTEQDPGHAD  194 (243)
T ss_dssp             HHHHHHCTTCHH
T ss_pred             HHHHHhCcccHH
Confidence            888877765543

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.65  E-value=4e-15  Score=129.06  Aligned_cols=106  Identities=28%  Similarity=0.446  Sum_probs=101.5

Q ss_pred             chHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 014256           72 PDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATA  150 (428)
Q Consensus        72 ~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~  150 (428)
                      ..+..++.+|.+++..|+|++|+.+|++++.++|+ +.+|+++|.+|+.+|+|++|+.+|.+++.++|+++.+|+++|.+
T Consensus         9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~   88 (164)
T 3sz7_A            9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA   88 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            34556899999999999999999999999999998 99999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCcHHH
Q 014256          151 RKELGKLKESIEDSEFALRLEPQNQEI  177 (428)
Q Consensus       151 ~~~lg~~~eA~~~~~~al~l~P~~~~~  177 (428)
                      +..+|++++|+..|++++.++|++..+
T Consensus        89 ~~~~g~~~~A~~~~~~al~~~p~~~~~  115 (164)
T 3sz7_A           89 RFDMADYKGAKEAYEKGIEAEGNGGSD  115 (164)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHSSSCCH
T ss_pred             HHHccCHHHHHHHHHHHHHhCCCchHH
Confidence            999999999999999999999999774

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.64  E-value=9.5e-16  Score=140.89  Aligned_cols=158  Identities=18%  Similarity=0.233  Sum_probs=139.1

Q ss_pred             hhhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCc-----hHHHHHHHHHHHHHhcCHHHHHHHHHHHHc----------
Q 014256           39 KSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTP-----DATSEKELGNECFKQKKFKEAIDCYSRSIA----------  102 (428)
Q Consensus        39 ~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~-----~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~----------  102 (428)
                      ..++..+|.+| ..|++++|+..|.+++..+|...     .+..+..+|.++...|++++|+.+|.+++.          
T Consensus        38 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~  117 (258)
T 3uq3_A           38 ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTK  117 (258)
T ss_dssp             THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHH
Confidence            34556666677 89999999999999999887651     134588999999999999999999999999          


Q ss_pred             ----------------cCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 014256          103 ----------------LSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSE  165 (428)
Q Consensus       103 ----------------~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~  165 (428)
                                      .+|. ..++.++|.++...|++++|+..|++++.++|.++.+++.+|.++..+|++++|+..|+
T Consensus       118 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  197 (258)
T 3uq3_A          118 LRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCN  197 (258)
T ss_dssp             HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence                            5666 77899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhCCCcHHH----------HHHHHHHHHHHHHHHHhch
Q 014256          166 FALRLEPQNQEI----------KKQLAEVKSLYEKEVFQKA  196 (428)
Q Consensus       166 ~al~l~P~~~~~----------~~~l~~a~~~~~~a~~~~~  196 (428)
                      +++.++|++..+          .+++.+|...|++++...|
T Consensus       198 ~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~  238 (258)
T 3uq3_A          198 KAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDA  238 (258)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCh
Confidence            999999998876          3557788888999888883

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.64  E-value=2.3e-15  Score=135.32  Aligned_cols=154  Identities=14%  Similarity=0.037  Sum_probs=111.2

Q ss_pred             hhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHH
Q 014256           41 AKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYL  118 (428)
Q Consensus        41 a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~  118 (428)
                      ++..++..+ ..|++++|+..|.+++..+|....+  +..+|.++...|++++|+.+|.+++..+|. ..++.++|.++.
T Consensus        10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~   87 (225)
T 2vq2_A           10 IKTQLAMEYMRGQDYRQATASIEDALKSDPKNELA--WLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLC   87 (225)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHH--HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence            334445555 6777777777777777777766555  667777777777777777777777777776 777777777777


Q ss_pred             Hh-cCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH----------HHHHHHHH
Q 014256          119 KL-RRFQEAEDDCTEALN--LDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI----------KKQLAEVK  185 (428)
Q Consensus       119 ~~-~~~~eA~~~~~~al~--l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~----------~~~l~~a~  185 (428)
                      .. |++++|+..+++++.  .+|.+..+++.+|.++...|++++|+..|++++...|.+..+          .+++.+|.
T Consensus        88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~  167 (225)
T 2vq2_A           88 GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDAD  167 (225)
T ss_dssp             TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHH
Confidence            77 777777777777777  556667777777777777777777777777777777776654          34455666


Q ss_pred             HHHHHHHHhch
Q 014256          186 SLYEKEVFQKA  196 (428)
Q Consensus       186 ~~~~~a~~~~~  196 (428)
                      ..+++++...|
T Consensus       168 ~~~~~~~~~~~  178 (225)
T 2vq2_A          168 YYFKKYQSRVE  178 (225)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHhCC
Confidence            66666666655

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.64  E-value=5.4e-16  Score=151.47  Aligned_cols=135  Identities=27%  Similarity=0.318  Sum_probs=122.8

Q ss_pred             cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-H---------------HHHHHH
Q 014256           50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-A---------------VAYANR  113 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~---------------~~~~nl  113 (428)
                      .++++++|+..|.+++..+|....+  ++.+|++++..|+|++|+.+|.+++.++|. .               .+|+++
T Consensus       125 ~L~~~~~A~~~~~~a~~~~p~~a~~--~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nl  202 (336)
T 1p5q_A          125 HLKSFEKAKESWEMNSEEKLEQSTI--VKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNL  202 (336)
T ss_dssp             EEEEEECCCCGGGCCHHHHHHHHHH--HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHH
T ss_pred             EEeecccccchhcCCHHHHHHHHHH--HHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHH
Confidence            5678888999999988887765555  889999999999999999999999999987 2               789999


Q ss_pred             HHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 014256          114 AMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKS  186 (428)
Q Consensus       114 a~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~  186 (428)
                      |.||+.+|+|++|+.+|++++.++|+++.+++++|.++..+|++++|+.+|+++++++|++..++..+..+..
T Consensus       203 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~  275 (336)
T 1p5q_A          203 AMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ  275 (336)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999988655555443

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.63  E-value=2.4e-15  Score=140.02  Aligned_cols=155  Identities=10%  Similarity=0.045  Sum_probs=137.4

Q ss_pred             CCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc----HHHHHHHHHHHHH
Q 014256           45 SPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLK  119 (428)
Q Consensus        45 ~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~nla~~~~~  119 (428)
                      +|..+ ..|++++|+..|++++..+|.+..+  +..+|.+++..|+|++|+.+|.+++...++    ..+|.++|.++..
T Consensus         9 ~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~--~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~   86 (272)
T 3u4t_A            9 YADFLFKNNNYAEAIEVFNKLEAKKYNSPYI--YNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMK   86 (272)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHTTCCCSTT--HHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHhCCCcHHH--HHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence            44455 8899999999999999999998877  779999999999999999999999994322    5679999999999


Q ss_pred             hcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHH----------HHHHHHHHHH
Q 014256          120 LRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKK----------QLAEVKSLYE  189 (428)
Q Consensus       120 ~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~----------~l~~a~~~~~  189 (428)
                      +|++++|+..|.+++.++|.++.++..+|.++..+|++++|+..|++++.++|.+..++.          ++.+|...|.
T Consensus        87 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  166 (272)
T 3u4t_A           87 KGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFV  166 (272)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999987743          3457888888


Q ss_pred             HHHHhchhhhHh
Q 014256          190 KEVFQKASKTLE  201 (428)
Q Consensus       190 ~a~~~~~~~~~~  201 (428)
                      +++..+|.....
T Consensus       167 ~a~~~~p~~~~~  178 (272)
T 3u4t_A          167 KVLELKPNIYIG  178 (272)
T ss_dssp             HHHHHSTTCHHH
T ss_pred             HHHHhCccchHH
Confidence            888888776543

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.63  E-value=2.4e-16  Score=135.54  Aligned_cols=125  Identities=12%  Similarity=0.050  Sum_probs=108.1

Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 014256           79 ELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKL  157 (428)
Q Consensus        79 ~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~  157 (428)
                      .+|.++...|++++|+..|.+++..+|. +..++++|.+|+.+|+|++|+..|++++.++|+++.+|+++|.++..+|++
T Consensus         2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~   81 (150)
T 4ga2_A            2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT   81 (150)
T ss_dssp             -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence            4788999999999999999999999998 888999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhCCCcHHHHHH----------HHHHHH-HHHHHHHhchhhhHhhh
Q 014256          158 KESIEDSEFALRLEPQNQEIKKQ----------LAEVKS-LYEKEVFQKASKTLEKY  203 (428)
Q Consensus       158 ~eA~~~~~~al~l~P~~~~~~~~----------l~~a~~-~~~~a~~~~~~~~~~~~  203 (428)
                      ++|+..|+++++++|+++.++..          +.++.. ++++++.++|.++....
T Consensus        82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~  138 (150)
T 4ga2_A           82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYK  138 (150)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHH
Confidence            99999999999999999887332          334444 45889999988876544

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.63  E-value=3.6e-15  Score=137.43  Aligned_cols=156  Identities=12%  Similarity=0.044  Sum_probs=89.0

Q ss_pred             hhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHc--cCCc-HHHHHHHHHH
Q 014256           41 AKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIA--LSPT-AVAYANRAMA  116 (428)
Q Consensus        41 a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~--~~p~-~~~~~nla~~  116 (428)
                      ++..++.+| ..|++++|+..|.+++..+|....+  +..+|.+++..|++++|+.+|.+++.  ..|. ..++.++|.+
T Consensus        73 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~  150 (252)
T 2ho1_A           73 AHAALAVVFQTEMEPKLADEEYRKALASDSRNARV--LNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLV  150 (252)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHH--HHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHH
Confidence            333344444 5566666666666666665554433  45566666666666666666666665  4444 5555666666


Q ss_pred             HHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH----------HHHHHHHHH
Q 014256          117 YLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI----------KKQLAEVKS  186 (428)
Q Consensus       117 ~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~----------~~~l~~a~~  186 (428)
                      +...|++++|+..+.+++..+|.++.+++.+|.++..+|++++|+..|++++.+.|.+...          .+++.+|..
T Consensus       151 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~  230 (252)
T 2ho1_A          151 SLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAAS  230 (252)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHH
Confidence            6666666666666666666666666666666666666666666666666666666655443          233444555


Q ss_pred             HHHHHHHhchhh
Q 014256          187 LYEKEVFQKASK  198 (428)
Q Consensus       187 ~~~~a~~~~~~~  198 (428)
                      .+++++...|.+
T Consensus       231 ~~~~~~~~~p~~  242 (252)
T 2ho1_A          231 YGLQLKRLYPGS  242 (252)
T ss_dssp             HHHHHHHHCTTS
T ss_pred             HHHHHHHHCCCC
Confidence            555555554443

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.63  E-value=2e-15  Score=147.35  Aligned_cols=149  Identities=13%  Similarity=0.143  Sum_probs=90.2

Q ss_pred             cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHH
Q 014256           50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  128 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~  128 (428)
                      ..|++++|+..|++++..+|.+..+  +..+|.++...|+|++|+.+|.+++.++|+ ..+|.++|.+|..+|++++|+.
T Consensus        77 ~~g~~~~A~~~~~~al~~~p~~~~~--~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~  154 (365)
T 4eqf_A           77 KEGDLPVTILFMEAAILQDPGDAEA--WQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACE  154 (365)
T ss_dssp             HHTCHHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHhCcCCHHH--HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHH
Confidence            4555555555555555555554433  445555555555555555555555555554 5555555555555555555554


Q ss_pred             HHHHHHhc--------------------------------------------CCC--CHHHHHHHHHHHHHcCCHHHHHH
Q 014256          129 DCTEALNL--------------------------------------------DDR--YIKAYSRRATARKELGKLKESIE  162 (428)
Q Consensus       129 ~~~~al~l--------------------------------------------~p~--~~~a~~~lg~~~~~lg~~~eA~~  162 (428)
                      .|.+++.+                                            +|.  ++.+++.+|.++..+|++++|+.
T Consensus       155 ~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~  234 (365)
T 4eqf_A          155 ALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAID  234 (365)
T ss_dssp             HHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHH
Confidence            44444443                                            344  67777777777777777777777


Q ss_pred             HHHHHHhhCCCcHHH----------HHHHHHHHHHHHHHHHhchhhhH
Q 014256          163 DSEFALRLEPQNQEI----------KKQLAEVKSLYEKEVFQKASKTL  200 (428)
Q Consensus       163 ~~~~al~l~P~~~~~----------~~~l~~a~~~~~~a~~~~~~~~~  200 (428)
                      .|++++.+.|++..+          .+++.+|+..|++++..+|....
T Consensus       235 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~  282 (365)
T 4eqf_A          235 AFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIR  282 (365)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchH
Confidence            777777777777655          24566777777777777766544

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.62  E-value=1.6e-15  Score=155.05  Aligned_cols=147  Identities=16%  Similarity=0.084  Sum_probs=132.7

Q ss_pred             hhhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHh---------cCHHHHHHHHHHHHccCCc-H
Q 014256           39 KSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQ---------KKFKEAIDCYSRSIALSPT-A  107 (428)
Q Consensus        39 ~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~---------g~~~~Ai~~y~~al~~~p~-~  107 (428)
                      ..++..+|.+| ..|++++|+.+|++++..+|+ .  ..+..+|.++...         |+|++|+.+|+++++++|+ .
T Consensus       137 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~--~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~  213 (474)
T 4abn_A          137 VEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-K--VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDG  213 (474)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-H--HHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-H--HHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCH
Confidence            34445555566 889999999999999999988 3  4588999999999         9999999999999999999 9


Q ss_pred             HHHHHHHHHHHHh--------cCHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q 014256          108 VAYANRAMAYLKL--------RRFQEAEDDCTEALNLDD---RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE  176 (428)
Q Consensus       108 ~~~~nla~~~~~~--------~~~~eA~~~~~~al~l~p---~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~  176 (428)
                      .+|+++|.+|..+        |+|++|+..|++++.++|   .++.+|+++|.++..+|++++|+..|+++++++|++..
T Consensus       214 ~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~  293 (474)
T 4abn_A          214 RSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPE  293 (474)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence            9999999999999        999999999999999999   99999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHH
Q 014256          177 IKKQLAEVKSLY  188 (428)
Q Consensus       177 ~~~~l~~a~~~~  188 (428)
                      ++..+..+...+
T Consensus       294 a~~~l~~~~~~l  305 (474)
T 4abn_A          294 PQQREQQLLEFL  305 (474)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            866666554433

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.62  E-value=5.6e-15  Score=136.11  Aligned_cols=158  Identities=16%  Similarity=0.137  Sum_probs=140.3

Q ss_pred             hhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHH
Q 014256           40 SAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAY  117 (428)
Q Consensus        40 ~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~  117 (428)
                      .++..++..| ..|++++|+..|++++..+|....+  +..+|.++...|++++|+.+|.+++..+|. ..++.++|.+|
T Consensus        38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~--~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~  115 (252)
T 2ho1_A           38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADA--HAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFL  115 (252)
T ss_dssp             HHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHH
Confidence            4455666666 8899999999999999999987666  789999999999999999999999999998 88999999999


Q ss_pred             HHhcCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHH----------HHHHHHH
Q 014256          118 LKLRRFQEAEDDCTEALN--LDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK----------KQLAEVK  185 (428)
Q Consensus       118 ~~~~~~~eA~~~~~~al~--l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~----------~~l~~a~  185 (428)
                      ...|++++|+..+.+++.  .+|.+..+++.+|.++...|++++|+..|++++.+.|.+..+.          +++.+|.
T Consensus       116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  195 (252)
T 2ho1_A          116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPAR  195 (252)
T ss_dssp             HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHH
Confidence            999999999999999999  8899999999999999999999999999999999999987763          4466777


Q ss_pred             HHHHHHHHhchhhh
Q 014256          186 SLYEKEVFQKASKT  199 (428)
Q Consensus       186 ~~~~~a~~~~~~~~  199 (428)
                      ..+.+++...|...
T Consensus       196 ~~~~~~~~~~~~~~  209 (252)
T 2ho1_A          196 QYYDLFAQGGGQNA  209 (252)
T ss_dssp             HHHHHHHTTSCCCH
T ss_pred             HHHHHHHHhCcCcH
Confidence            77777776665443

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.61  E-value=1.4e-14  Score=134.62  Aligned_cols=147  Identities=16%  Similarity=0.086  Sum_probs=129.8

Q ss_pred             cCCCCcchHHHHHhhhhcCCCC--chHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHH
Q 014256           50 SYSRNYDPVSHISSSLMNEEST--PDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEA  126 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~~--~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA  126 (428)
                      ..|++++|+..|.+++...+..  ..+..+..+|.+++..|++++|+.+|.+++..+|. ..+|.++|.+|...|++++|
T Consensus        17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A   96 (275)
T 1xnf_A           17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAA   96 (275)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHH
Confidence            6789999999999999985422  23555889999999999999999999999999998 99999999999999999999


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH---------HHHHHHHHHHHHHHHHhch
Q 014256          127 EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI---------KKQLAEVKSLYEKEVFQKA  196 (428)
Q Consensus       127 ~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~---------~~~l~~a~~~~~~a~~~~~  196 (428)
                      +..|.+++.++|.++.+++.+|.++..+|++++|+..|++++.+.|++...         .+++.+|...+.+++...|
T Consensus        97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~  175 (275)
T 1xnf_A           97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD  175 (275)
T ss_dssp             HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence            999999999999999999999999999999999999999999999998754         3455666666666665543

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.61  E-value=5.9e-15  Score=153.81  Aligned_cols=144  Identities=15%  Similarity=0.049  Sum_probs=88.9

Q ss_pred             CCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHH
Q 014256           52 SRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDC  130 (428)
Q Consensus        52 g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~  130 (428)
                      |++++|+..|++++..+|.+..+  +..+|.++...|+|++|+.+|+++++++|+ ..++.++|.+|..+|++++|+..|
T Consensus         3 g~~~~A~~~~~~al~~~p~~~~~--~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~   80 (568)
T 2vsy_A            3 ADGPRELLQLRAAVRHRPQDFVA--WLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL   80 (568)
T ss_dssp             ------------------CCHHH--HHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            56677777777777777766555  667777777777777777777777777776 667777777777777777777777


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH----------H---HHHHHHHHHHHHHHHhchh
Q 014256          131 TEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI----------K---KQLAEVKSLYEKEVFQKAS  197 (428)
Q Consensus       131 ~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~----------~---~~l~~a~~~~~~a~~~~~~  197 (428)
                      ++++.++|++..+++++|.++..+|++++|+..|+++++++|++..+          .   +++++|...|++++..+|.
T Consensus        81 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~  160 (568)
T 2vsy_A           81 QQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVG  160 (568)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCC
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCc
Confidence            77777777777777777777777777777777777777777776554          2   4555666666666666654

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.61  E-value=4.9e-15  Score=144.55  Aligned_cols=158  Identities=13%  Similarity=0.086  Sum_probs=136.7

Q ss_pred             hhhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-----------
Q 014256           39 KSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-----------  106 (428)
Q Consensus        39 ~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-----------  106 (428)
                      ..++..+|.+| ..|++++|+..|++++..+|.+..+  +..+|.+|...|++++|+.+|.+++.++|+           
T Consensus        99 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~--~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~  176 (365)
T 4eqf_A           99 AEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKA--LMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGS  176 (365)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHH--HHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccc
Confidence            33444455556 8899999999999999999987766  789999999999999999999999987653           


Q ss_pred             ------------------------------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 014256          107 ------------------------------------AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATA  150 (428)
Q Consensus       107 ------------------------------------~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~  150 (428)
                                                          +.+++++|.+|..+|++++|+..|.+++.++|+++.+++++|.+
T Consensus       177 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  256 (365)
T 4eqf_A          177 PGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGAT  256 (365)
T ss_dssp             ------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence                                                45688999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCcHHHH----------HHHHHHHHHHHHHHHhchhh
Q 014256          151 RKELGKLKESIEDSEFALRLEPQNQEIK----------KQLAEVKSLYEKEVFQKASK  198 (428)
Q Consensus       151 ~~~lg~~~eA~~~~~~al~l~P~~~~~~----------~~l~~a~~~~~~a~~~~~~~  198 (428)
                      +..+|++++|+..|++++.++|++..++          +++.+|...|++++.+.|..
T Consensus       257 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  314 (365)
T 4eqf_A          257 LANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKS  314 (365)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC
T ss_pred             HHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            9999999999999999999999998873          44567777777777776543

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.61  E-value=7.4e-15  Score=131.99  Aligned_cols=161  Identities=12%  Similarity=0.035  Sum_probs=138.2

Q ss_pred             ChhhhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHh-cCHHHHHHHHHHHHc--cCCc-HHHHH
Q 014256           37 SLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQ-KKFKEAIDCYSRSIA--LSPT-AVAYA  111 (428)
Q Consensus        37 ~~~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~-g~~~~Ai~~y~~al~--~~p~-~~~~~  111 (428)
                      +...++..++.+| ..|++++|+..|.+++..+|....+  +..+|.++... |++++|+.+|.+++.  .+|. ..++.
T Consensus        40 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~--~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~  117 (225)
T 2vq2_A           40 KNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEI--NNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANL  117 (225)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHH
T ss_pred             cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHH--HHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHH
Confidence            3345566667777 8999999999999999999987766  77999999999 999999999999999  5566 78899


Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CcHHHH----------HH
Q 014256          112 NRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEP-QNQEIK----------KQ  180 (428)
Q Consensus       112 nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P-~~~~~~----------~~  180 (428)
                      ++|.++...|++++|+..+.+++..+|.++.+++.+|.++...|++++|+..+++++.+.| .+....          +.
T Consensus       118 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (225)
T 2vq2_A          118 NKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGN  197 (225)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCc
Confidence            9999999999999999999999999999999999999999999999999999999999999 887763          23


Q ss_pred             HHHHHHHHHHHHHhchhhh
Q 014256          181 LAEVKSLYEKEVFQKASKT  199 (428)
Q Consensus       181 l~~a~~~~~~a~~~~~~~~  199 (428)
                      ...+..+++......|.+.
T Consensus       198 ~~~a~~~~~~~~~~~p~~~  216 (225)
T 2vq2_A          198 AQAAYEYEAQLQANFPYSE  216 (225)
T ss_dssp             HHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHhCCCCH
Confidence            4455555555555555544

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.60  E-value=4e-15  Score=133.21  Aligned_cols=140  Identities=24%  Similarity=0.245  Sum_probs=118.5

Q ss_pred             cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-H----------------HHHHH
Q 014256           50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-A----------------VAYAN  112 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~----------------~~~~n  112 (428)
                      ..|+++.|.+.+.......+.  .+..+..+|..++..|+|++|+.+|.+++.+.|. +                .+|.+
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (198)
T 2fbn_A           16 NLYFQGAKKSIYDYTDEEKVQ--SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLN   93 (198)
T ss_dssp             ------CCCSGGGCCHHHHHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred             hhhhccccCchhhCCHHHHHH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHH
Confidence            566777777776655544333  3445889999999999999999999999998876 5                78999


Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHH
Q 014256          113 RAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKE  191 (428)
Q Consensus       113 la~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~~a  191 (428)
                      +|.+|+.+|+|++|+.+|.+++.++|.++.+++++|.++..+|++++|+..|++++.++|++..+...+..+.....+.
T Consensus        94 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~  172 (198)
T 2fbn_A           94 LATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEA  172 (198)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999988888777665543

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.60  E-value=8.5e-16  Score=156.45  Aligned_cols=138  Identities=25%  Similarity=0.325  Sum_probs=121.3

Q ss_pred             cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc----------------HHHHHHH
Q 014256           50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----------------AVAYANR  113 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~----------------~~~~~nl  113 (428)
                      ..+++++|+..|..++...|....+  ++.+|+.+++.|+|++|+.+|.+++.++|.                ..+|+|+
T Consensus       246 ~l~~~~~A~~~~~~~~~~~~~~a~~--~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nl  323 (457)
T 1kt0_A          246 TLKSFEKAKESWEMDTKEKLEQAAI--VKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNL  323 (457)
T ss_dssp             EEEEEECCCCGGGSCHHHHHHHHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhcccCcchhhcCHHHHHHHHHH--HHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHH
Confidence            5677888998888888887765544  889999999999999999999999999886                3789999


Q ss_pred             HHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHH
Q 014256          114 AMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYE  189 (428)
Q Consensus       114 a~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~  189 (428)
                      |.||+++|+|++|+.+|++++.++|+++.+|+++|.+|..+|+|++|+.+|+++++++|++..++..+..+...+.
T Consensus       324 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~  399 (457)
T 1kt0_A          324 AMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAK  399 (457)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999988877777665544

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.60  E-value=1.3e-15  Score=162.69  Aligned_cols=155  Identities=9%  Similarity=-0.059  Sum_probs=140.6

Q ss_pred             ccCCCCcchHHHHHhhh--------hcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHH
Q 014256           49 NSYSRNYDPVSHISSSL--------MNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLK  119 (428)
Q Consensus        49 y~~g~~~~Ai~~~~~al--------~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~  119 (428)
                      +..|++++|+..|++++        ..+|.+..+  +..+|.+++..|+|++|+..|+++++.+|+ ..+|+++|.+|+.
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~--~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~  479 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVEL--PLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELL  479 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHH--HHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhH--HHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHH
Confidence            47899999999999999        888988777  779999999999999999999999999998 9999999999999


Q ss_pred             hcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHH----------HHHHHHHHHHH
Q 014256          120 LRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK----------KQLAEVKSLYE  189 (428)
Q Consensus       120 ~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~----------~~l~~a~~~~~  189 (428)
                      +|+|++|+..|+++++++|+++.+++++|.++..+|++++ +..|+++++++|++..++          +++++|+..|+
T Consensus       480 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~  558 (681)
T 2pzi_A          480 TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLD  558 (681)
T ss_dssp             HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            9999999999999999999999999999999999999999 999999999999998873          45778888888


Q ss_pred             HHHHhchhhhHhhhccc
Q 014256          190 KEVFQKASKTLEKYGKS  206 (428)
Q Consensus       190 ~a~~~~~~~~~~~~~~~  206 (428)
                      +++.++|.....+.+.+
T Consensus       559 ~al~l~P~~~~a~~~~~  575 (681)
T 2pzi_A          559 EVPPTSRHFTTARLTSA  575 (681)
T ss_dssp             TSCTTSTTHHHHHHHHH
T ss_pred             hhcccCcccHHHHHHHH
Confidence            88888887766554443

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.60  E-value=7.8e-16  Score=164.42  Aligned_cols=147  Identities=9%  Similarity=-0.088  Sum_probs=134.4

Q ss_pred             cChhhhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHH
Q 014256           36 SSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANR  113 (428)
Q Consensus        36 ~~~~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nl  113 (428)
                      ++...++..++.+| ..|++++|+..|++++..+|++..+  ++.+|.+++..|+|++|+.+|+++++++|+ +.+|+++
T Consensus       430 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a--~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~l  507 (681)
T 2pzi_A          430 SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRL--VWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLAL  507 (681)
T ss_dssp             TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHH--HHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHH
T ss_pred             ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence            34445555556666 8899999999999999999998777  889999999999999999999999999998 8999999


Q ss_pred             HHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 014256          114 AMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVK  185 (428)
Q Consensus       114 a~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~  185 (428)
                      |.+|..+|+|++ +..|+++++++|+++.+++++|.++..+|++++|+..|+++++++|++..++..+..+.
T Consensus       508 g~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~  578 (681)
T 2pzi_A          508 AATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTL  578 (681)
T ss_dssp             HHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHT
T ss_pred             HHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHH
Confidence            999999999999 99999999999999999999999999999999999999999999999998876666553

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.60  E-value=3.2e-15  Score=142.50  Aligned_cols=164  Identities=13%  Similarity=-0.006  Sum_probs=137.8

Q ss_pred             ccChhhhhcCCCccc-cCC-CCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHH
Q 014256           35 SSSLKSAKKPSPSGN-SYS-RNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYA  111 (428)
Q Consensus        35 ~~~~~~a~~~~~~~y-~~g-~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~  111 (428)
                      .++...++..++..+ ..| ++++|+.+|.+++..+|.+..+  +..+|.++...|++++|+.+|.+++...|. ...+.
T Consensus        86 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~  163 (330)
T 3hym_B           86 YPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPA--WIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPML  163 (330)
T ss_dssp             CTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHH--HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHH
T ss_pred             CcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHH--HHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHH
Confidence            345556667777777 778 8899999999999999887766  779999999999999999999999999888 77788


Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---------CCcHHH-----
Q 014256          112 NRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLE---------PQNQEI-----  177 (428)
Q Consensus       112 nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~---------P~~~~~-----  177 (428)
                      ++|.+|...|++++|+..+.+++..+|.++.+++.+|.++...|++++|+..|++++.+.         |....+     
T Consensus       164 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la  243 (330)
T 3hym_B          164 YIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLG  243 (330)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHH
Confidence            899999999999999999999999999999999999999999999999999999999886         443333     


Q ss_pred             -----HHHHHHHHHHHHHHHHhchhhhH
Q 014256          178 -----KKQLAEVKSLYEKEVFQKASKTL  200 (428)
Q Consensus       178 -----~~~l~~a~~~~~~a~~~~~~~~~  200 (428)
                           .+++++|...+++++...|....
T Consensus       244 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~  271 (330)
T 3hym_B          244 HVCRKLKKYAEALDYHRQALVLIPQNAS  271 (330)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCSH
T ss_pred             HHHHHhcCHHHHHHHHHHHHhhCccchH
Confidence                 35678888889988888877654

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.59  E-value=1.3e-14  Score=141.11  Aligned_cols=156  Identities=13%  Similarity=0.078  Sum_probs=108.0

Q ss_pred             cCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHh
Q 014256           43 KPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKL  120 (428)
Q Consensus        43 ~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~  120 (428)
                      ..+|..| ..|++++|+..|.+++..+|.+..+  +..+|.++...|++++|+.+|.+++.++|+ ..++.++|.+|..+
T Consensus        68 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~--~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~  145 (368)
T 1fch_A           68 FEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEA--WQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNE  145 (368)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH--HHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Confidence            3444444 6677777777777777777766555  567777777777777777777777777776 66777777777777


Q ss_pred             cCHHHHHHHHHHHHhcC-------------------------------------------------CC--CHHHHHHHHH
Q 014256          121 RRFQEAEDDCTEALNLD-------------------------------------------------DR--YIKAYSRRAT  149 (428)
Q Consensus       121 ~~~~eA~~~~~~al~l~-------------------------------------------------p~--~~~a~~~lg~  149 (428)
                      |++++|+..+.+++.++                                                 |.  ++.+++.+|.
T Consensus       146 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~  225 (368)
T 1fch_A          146 SLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGV  225 (368)
T ss_dssp             TCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHH
Confidence            76666666665555443                                                 33  5667777788


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCcHHH----------HHHHHHHHHHHHHHHHhchhhhH
Q 014256          150 ARKELGKLKESIEDSEFALRLEPQNQEI----------KKQLAEVKSLYEKEVFQKASKTL  200 (428)
Q Consensus       150 ~~~~lg~~~eA~~~~~~al~l~P~~~~~----------~~~l~~a~~~~~~a~~~~~~~~~  200 (428)
                      ++...|++++|+..|++++.++|++..+          .+++.+|...|++++..+|....
T Consensus       226 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  286 (368)
T 1fch_A          226 LFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIR  286 (368)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Confidence            8888888888888888888777777655          24566777777777777766544

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.59  E-value=5.2e-15  Score=135.92  Aligned_cols=143  Identities=24%  Similarity=0.357  Sum_probs=126.7

Q ss_pred             hhhcCCCccc-cCCCCcchHHHHHhhhh--------------------------cCCCCchHHHHHHHHHHHHHhcCHHH
Q 014256           40 SAKKPSPSGN-SYSRNYDPVSHISSSLM--------------------------NEESTPDATSEKELGNECFKQKKFKE   92 (428)
Q Consensus        40 ~a~~~~~~~y-~~g~~~~Ai~~~~~al~--------------------------~~p~~~~a~~~~~lg~~~~~~g~~~~   92 (428)
                      .++..++.+| ..|++++|+..|.+++.                          .+|...  ..+..+|.+++..|+|++
T Consensus        80 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  157 (258)
T 3uq3_A           80 KSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKA--EEARLEGKEYFTKSDWPN  157 (258)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHH--HHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchH--HHHHHHHHHHHHhcCHHH
Confidence            4445566666 78888888888888888                          444433  348899999999999999


Q ss_pred             HHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 014256           93 AIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLE  171 (428)
Q Consensus        93 Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~  171 (428)
                      |+.+|.+++..+|. ..++.++|.++..+|++++|+..|.+++.++|+++.+++.+|.++..+|++++|+..|+++++++
T Consensus       158 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  237 (258)
T 3uq3_A          158 AVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD  237 (258)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence            99999999999998 99999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ------CCcHHHHHHHHHH
Q 014256          172 ------PQNQEIKKQLAEV  184 (428)
Q Consensus       172 ------P~~~~~~~~l~~a  184 (428)
                            |++..+...+..+
T Consensus       238 ~~~~~~p~~~~~~~~l~~~  256 (258)
T 3uq3_A          238 AEVNNGSSAREIDQLYYKA  256 (258)
T ss_dssp             HHHHTTTTHHHHHHHHHHT
T ss_pred             hhhcCCCchHHHHHHHHHh
Confidence                  8888877666544

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.59  E-value=3.5e-14  Score=118.32  Aligned_cols=113  Identities=35%  Similarity=0.526  Sum_probs=104.1

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 014256           74 ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARK  152 (428)
Q Consensus        74 a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~  152 (428)
                      +..++.+|..++..|+|++|+.+|.+++..+|+ +.+|+++|.++..+|+|++|+..|.+++.++|+++.+++++|.++.
T Consensus         9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~   88 (137)
T 3q49_B            9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL   88 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence            444889999999999999999999999999999 9999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhCCC-----cHHHHHHHHHHHH
Q 014256          153 ELGKLKESIEDSEFALRLEPQ-----NQEIKKQLAEVKS  186 (428)
Q Consensus       153 ~lg~~~eA~~~~~~al~l~P~-----~~~~~~~l~~a~~  186 (428)
                      .+|++++|+..|++++.++|+     +..+...+..+..
T Consensus        89 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~  127 (137)
T 3q49_B           89 EMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK  127 (137)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999998     5666555555543

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.58  E-value=2.1e-14  Score=137.29  Aligned_cols=129  Identities=14%  Similarity=0.056  Sum_probs=74.1

Q ss_pred             cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHH
Q 014256           50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  128 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~  128 (428)
                      ..|++++|+..|++++..+|+.........+.+.+...|++++|+.+|++++..+|+ +.+|+++|.++.++|++++|+.
T Consensus       142 ~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~  221 (291)
T 3mkr_A          142 KLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEG  221 (291)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence            556666666666666666655432211111112223335666666666666666665 5566666666666666666666


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHhhCCCcHHHH
Q 014256          129 DCTEALNLDDRYIKAYSRRATARKELGKLKE-SIEDSEFALRLEPQNQEIK  178 (428)
Q Consensus       129 ~~~~al~l~p~~~~a~~~lg~~~~~lg~~~e-A~~~~~~al~l~P~~~~~~  178 (428)
                      .+.+++.++|+++.+++++|.++..+|++.+ +..+++++++++|+++.+.
T Consensus       222 ~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~  272 (291)
T 3mkr_A          222 VLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK  272 (291)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH
Confidence            6666666666666666666666666666654 3455566666666665553

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.58  E-value=1.1e-14  Score=138.87  Aligned_cols=158  Identities=11%  Similarity=-0.031  Sum_probs=141.5

Q ss_pred             cChhhhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhc-CHHHHHHHHHHHHccCCc-HHHHHH
Q 014256           36 SSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQK-KFKEAIDCYSRSIALSPT-AVAYAN  112 (428)
Q Consensus        36 ~~~~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g-~~~~Ai~~y~~al~~~p~-~~~~~n  112 (428)
                      +....++..++.++ ..|++++|+..|.+++..+|.+..+  +..+|.++...| ++++|+.+|.+++..+|. ..+|.+
T Consensus        53 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~  130 (330)
T 3hym_B           53 PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVS--WFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIA  130 (330)
T ss_dssp             TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHH--HHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHH
T ss_pred             CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHH--HHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHH
Confidence            33334444455555 8899999999999999999998777  779999999999 999999999999999998 889999


Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH----------HHHHH
Q 014256          113 RAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI----------KKQLA  182 (428)
Q Consensus       113 la~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~----------~~~l~  182 (428)
                      +|.++...|++++|+..|.+++.++|.+..+++.+|.++...|++++|+..|++++.+.|.+..+          .+++.
T Consensus       131 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~  210 (330)
T 3hym_B          131 YGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWK  210 (330)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHH
Confidence            99999999999999999999999999999999999999999999999999999999999998776          35678


Q ss_pred             HHHHHHHHHHHhc
Q 014256          183 EVKSLYEKEVFQK  195 (428)
Q Consensus       183 ~a~~~~~~a~~~~  195 (428)
                      +|...+++++...
T Consensus       211 ~A~~~~~~a~~~~  223 (330)
T 3hym_B          211 TAEKWFLDALEKI  223 (330)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            8899999998875

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.57  E-value=1.4e-14  Score=119.87  Aligned_cols=100  Identities=16%  Similarity=0.090  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 014256           77 EKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG  155 (428)
Q Consensus        77 ~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg  155 (428)
                      ++.+|..++..|++++|+.+|++++..+|+ +.+|+++|.++..+|++++|+..|++++.++|+++.+++.+|.++..+|
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g   99 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH   99 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            678999999999999999999999999998 9999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhhCCCcHH
Q 014256          156 KLKESIEDSEFALRLEPQNQE  176 (428)
Q Consensus       156 ~~~eA~~~~~~al~l~P~~~~  176 (428)
                      ++++|+..|+++++++|++..
T Consensus       100 ~~~~A~~~~~~al~~~P~~~~  120 (121)
T 1hxi_A          100 NANAALASLRAWLLSQPQYEQ  120 (121)
T ss_dssp             HHHHHHHHHHHHHC-------
T ss_pred             CHHHHHHHHHHHHHhCcCCCC
Confidence            999999999999999998754

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.57  E-value=2.2e-14  Score=128.97  Aligned_cols=126  Identities=19%  Similarity=0.146  Sum_probs=114.3

Q ss_pred             Cccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCH
Q 014256           46 PSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRF  123 (428)
Q Consensus        46 ~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~  123 (428)
                      |..+ ..|++++|+..|.+++  +| .  +..+..+|.+++..|+|++|+.+|.+++.++|+ ..+|+++|.+|..+|+|
T Consensus        13 g~~~~~~~~~~~A~~~~~~a~--~~-~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~   87 (213)
T 1hh8_A           13 GVLAADKKDWKGALDAFSAVQ--DP-H--SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKY   87 (213)
T ss_dssp             HHHHHHTTCHHHHHHHHHTSS--SC-C--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHhCCHHHHHHHHHHHc--CC-C--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccH
Confidence            3344 7899999999999996  33 3  345889999999999999999999999999998 99999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q 014256          124 QEAEDDCTEALNLDDRYI----------------KAYSRRATARKELGKLKESIEDSEFALRLEPQNQE  176 (428)
Q Consensus       124 ~eA~~~~~~al~l~p~~~----------------~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~  176 (428)
                      ++|+..|.+++.+.|.+.                .+++++|.++..+|++++|+..|++++.+.|++..
T Consensus        88 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~  156 (213)
T 1hh8_A           88 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRH  156 (213)
T ss_dssp             HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGG
T ss_pred             HHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccccc
Confidence            999999999999888766                99999999999999999999999999999998743

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.57  E-value=1.9e-14  Score=139.91  Aligned_cols=160  Identities=18%  Similarity=0.129  Sum_probs=127.1

Q ss_pred             hhhhhcCCCccc-cCCCCcchHH-HHHhhhhcCCCCc--hHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHH
Q 014256           38 LKSAKKPSPSGN-SYSRNYDPVS-HISSSLMNEESTP--DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYAN  112 (428)
Q Consensus        38 ~~~a~~~~~~~y-~~g~~~~Ai~-~~~~al~~~p~~~--~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~n  112 (428)
                      +.......+.++ ..|+|++|+. .|.+++...|.++  .+..++.+|.+++..|+|++|+.+|.+++..+|. ..++.+
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  103 (368)
T 1fch_A           24 LEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQY  103 (368)
T ss_dssp             ----------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred             HHHHHcCCchhhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            333334444455 7899999999 9999999988764  2334789999999999999999999999999998 899999


Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH---------------
Q 014256          113 RAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI---------------  177 (428)
Q Consensus       113 la~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~---------------  177 (428)
                      +|.++..+|++++|+..|.+++.++|+++.+++.+|.++..+|++++|+..|++++.+.|.+...               
T Consensus       104 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (368)
T 1fch_A          104 LGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGP  183 (368)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC-------------
T ss_pred             HHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccH
Confidence            99999999999999999999999999999999999999999999999999999999999976543               


Q ss_pred             ----------HHHHHHHHHHHHHHHHhchh
Q 014256          178 ----------KKQLAEVKSLYEKEVFQKAS  197 (428)
Q Consensus       178 ----------~~~l~~a~~~~~~a~~~~~~  197 (428)
                                .+++.+|...|.+++...|.
T Consensus       184 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~  213 (368)
T 1fch_A          184 SKRILGSLLSDSLFLEVKELFLAAVRLDPT  213 (368)
T ss_dssp             --CTTHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHHhCcC
Confidence                      36788899999998888776

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.57  E-value=2.4e-14  Score=137.63  Aligned_cols=162  Identities=15%  Similarity=0.067  Sum_probs=124.3

Q ss_pred             ChhhhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCC---c-HHHHH
Q 014256           37 SLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSP---T-AVAYA  111 (428)
Q Consensus        37 ~~~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p---~-~~~~~  111 (428)
                      +...++..+|.+| ..|++++|+..|.+++..+|.+..+  +..+|.++...|++++|+.+|.+++..+|   + ..++.
T Consensus        35 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~  112 (359)
T 3ieg_A           35 DNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAA--RLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAES  112 (359)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchH--HHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHH
Confidence            3344555566666 7788888888888888888877655  66888888888888888888888888888   6 55555


Q ss_pred             HH------------HHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH--
Q 014256          112 NR------------AMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI--  177 (428)
Q Consensus       112 nl------------a~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~--  177 (428)
                      .+            |.++...|++++|+..+.+++..+|.++.++..+|.++..+|++++|+..+++++.+.|.+..+  
T Consensus       113 ~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  192 (359)
T 3ieg_A          113 QLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFY  192 (359)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            55            6788888888888888888888888888888888888888888888888888888888887766  


Q ss_pred             --------HHHHHHHHHHHHHHHHhchhhhH
Q 014256          178 --------KKQLAEVKSLYEKEVFQKASKTL  200 (428)
Q Consensus       178 --------~~~l~~a~~~~~~a~~~~~~~~~  200 (428)
                              .+++.+|...+++++...|....
T Consensus       193 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~  223 (359)
T 3ieg_A          193 KISTLYYQLGDHELSLSEVRECLKLDQDHKR  223 (359)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCccchH
Confidence                    34566677777777766655443

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.57  E-value=1.6e-14  Score=138.91  Aligned_cols=156  Identities=18%  Similarity=0.084  Sum_probs=140.1

Q ss_pred             CCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhc
Q 014256           44 PSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLR  121 (428)
Q Consensus        44 ~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~  121 (428)
                      .+|..+ ..|++++|+..|.+++..+|.+..+  +..+|.+++..|++++|+.+|.+++..+|+ ..++..+|.++...|
T Consensus         8 ~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~--~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   85 (359)
T 3ieg_A            8 ELGKKLLAAGQLADALSQFHAAVDGDPDNYIA--YYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQG   85 (359)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCcccHHH--HHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcC
Confidence            344555 8899999999999999999988766  789999999999999999999999999998 899999999999999


Q ss_pred             CHHHHHHHHHHHHhcCC---CCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHhhCCCcHHH---------
Q 014256          122 RFQEAEDDCTEALNLDD---RYIKAYSRR------------ATARKELGKLKESIEDSEFALRLEPQNQEI---------  177 (428)
Q Consensus       122 ~~~eA~~~~~~al~l~p---~~~~a~~~l------------g~~~~~lg~~~eA~~~~~~al~l~P~~~~~---------  177 (428)
                      ++++|+..|.+++.++|   ++..++..+            |.++...|++++|+..|++++...|.+..+         
T Consensus        86 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (359)
T 3ieg_A           86 KLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFI  165 (359)
T ss_dssp             CHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence            99999999999999999   898888877            799999999999999999999999998876         


Q ss_pred             -HHHHHHHHHHHHHHHHhchhhhHh
Q 014256          178 -KKQLAEVKSLYEKEVFQKASKTLE  201 (428)
Q Consensus       178 -~~~l~~a~~~~~~a~~~~~~~~~~  201 (428)
                       .+++.+|...+.+++...|.....
T Consensus       166 ~~~~~~~A~~~~~~~~~~~~~~~~~  190 (359)
T 3ieg_A          166 KEGEPRKAISDLKAASKLKSDNTEA  190 (359)
T ss_dssp             HTTCHHHHHHHHHHHHTTCSCCHHH
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCHHH
Confidence             345677888888888877766543

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.57  E-value=1.1e-14  Score=133.37  Aligned_cols=127  Identities=16%  Similarity=0.077  Sum_probs=113.8

Q ss_pred             cCCCCcchHHHHHhhhhcCCCCch-HHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc----HHHHHHHHHHHHH-----
Q 014256           50 SYSRNYDPVSHISSSLMNEESTPD-ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLK-----  119 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~~~~-a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~nla~~~~~-----  119 (428)
                      ..|++++|+..|++++...|.... ...++.+|.+++..|+|++|+..|++++..+|+    +.+++.+|.++..     
T Consensus        16 ~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~   95 (225)
T 2yhc_A           16 QDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSA   95 (225)
T ss_dssp             HHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--
T ss_pred             HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhh
Confidence            789999999999999999887643 345889999999999999999999999999997    3589999999987     


Q ss_pred             -------------hcCHHHHHHHHHHHHhcCCCCHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHh
Q 014256          120 -------------LRRFQEAEDDCTEALNLDDRYIKAY-----------------SRRATARKELGKLKESIEDSEFALR  169 (428)
Q Consensus       120 -------------~~~~~eA~~~~~~al~l~p~~~~a~-----------------~~lg~~~~~lg~~~eA~~~~~~al~  169 (428)
                                   +|++++|+..|.+++..+|++..++                 +.+|.++...|++.+|+..|+++++
T Consensus        96 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~  175 (225)
T 2yhc_A           96 LQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLR  175 (225)
T ss_dssp             ------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence                         5789999999999999999987554                 6789999999999999999999999


Q ss_pred             hCCCcHH
Q 014256          170 LEPQNQE  176 (428)
Q Consensus       170 l~P~~~~  176 (428)
                      ..|+++.
T Consensus       176 ~~p~~~~  182 (225)
T 2yhc_A          176 DYPDTQA  182 (225)
T ss_dssp             HSTTSHH
T ss_pred             HCcCCCc
Confidence            9999864

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.56  E-value=2.3e-14  Score=117.39  Aligned_cols=128  Identities=28%  Similarity=0.389  Sum_probs=115.0

Q ss_pred             CCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcC
Q 014256           45 SPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRR  122 (428)
Q Consensus        45 ~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~  122 (428)
                      ++..| ..|++++|+..|.+++..+|....+  +..+|.++...|++++|+.+|.+++...|. ..++.++|.++...|+
T Consensus         7 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   84 (136)
T 2fo7_A            7 LGNAYYKQGDYDEAIEYYQKALELDPRSAEA--WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD   84 (136)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHcCcHHHHHHHHHHHHHcCCcchhH--HHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcC
Confidence            34444 6789999999999999998876655  778999999999999999999999999988 8889999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 014256          123 FQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN  174 (428)
Q Consensus       123 ~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~  174 (428)
                      +++|+..+.+++..+|.+..+++.+|.++...|++++|...+++++.++|++
T Consensus        85 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~  136 (136)
T 2fo7_A           85 YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS  136 (136)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence            9999999999999999999999999999999999999999999999998863

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.56  E-value=1.8e-13  Score=109.78  Aligned_cols=112  Identities=32%  Similarity=0.524  Sum_probs=105.2

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 014256           74 ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARK  152 (428)
Q Consensus        74 a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~  152 (428)
                      +..++.+|..++..|+|++|+.+|.+++..+|. ..++.++|.++..+|++++|+..+.+++.++|+++.+++++|.++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~   83 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE   83 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            445889999999999999999999999999998 8999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 014256          153 ELGKLKESIEDSEFALRLEPQNQEIKKQLAEVK  185 (428)
Q Consensus       153 ~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~  185 (428)
                      .+|++++|...|++++.++|++..+...+..+.
T Consensus        84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  116 (118)
T 1elw_A           84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME  116 (118)
T ss_dssp             HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence            999999999999999999999998877666553

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.55  E-value=8.1e-15  Score=136.43  Aligned_cols=140  Identities=11%  Similarity=0.005  Sum_probs=91.9

Q ss_pred             hhhhhcCCCccc-cCCCCcchHHHHHhhhhcCCCC-chHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHH
Q 014256           38 LKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEEST-PDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRA  114 (428)
Q Consensus        38 ~~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~-~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla  114 (428)
                      ...++..++.+| ..|++++|+..|.+++...++. ..+..+..+|.++...|++++|+.+|.+++..+|. ..+|.++|
T Consensus        36 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~  115 (272)
T 3u4t_A           36 SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIG  115 (272)
T ss_dssp             CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHH
Confidence            334555555555 6677777777777777632111 11333567777777777777777777777777776 66677777


Q ss_pred             HHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH
Q 014256          115 MAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI  177 (428)
Q Consensus       115 ~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~  177 (428)
                      .+|..+|++++|+..|++++.++|.++.+++.+|......+++++|+..|++++.++|++..+
T Consensus       116 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~  178 (272)
T 3u4t_A          116 SYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIG  178 (272)
T ss_dssp             HHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred             HHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHH
Confidence            777777777777777777777777777777777733444457777777777777777776554

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.55  E-value=3.2e-14  Score=123.42  Aligned_cols=135  Identities=17%  Similarity=0.110  Sum_probs=125.2

Q ss_pred             hhhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHH
Q 014256           39 KSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMA  116 (428)
Q Consensus        39 ~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~  116 (428)
                      ..++..++..| ..|++++|+..|.+++...|....+  +..+|.++...|++++|+.+|.+++..+|. ..++.++|.+
T Consensus        42 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~  119 (186)
T 3as5_A           42 VDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKV--ATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVA  119 (186)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH--HHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHH
Confidence            44555566666 8999999999999999999987766  779999999999999999999999999998 8899999999


Q ss_pred             HHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH
Q 014256          117 YLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQ  175 (428)
Q Consensus       117 ~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~  175 (428)
                      +...|++++|+..+.+++..+|.++.+++.+|.++...|++++|...+++++.+.|++.
T Consensus       120 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~  178 (186)
T 3as5_A          120 LDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGAS  178 (186)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCch
Confidence            99999999999999999999999999999999999999999999999999999988764

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.54  E-value=3e-14  Score=132.93  Aligned_cols=141  Identities=15%  Similarity=0.090  Sum_probs=124.4

Q ss_pred             hhhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCc-hHHHHHHHHHHHHH--------hcCHHHHHHHHHHHHccCCc-H
Q 014256           39 KSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTP-DATSEKELGNECFK--------QKKFKEAIDCYSRSIALSPT-A  107 (428)
Q Consensus        39 ~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~-~a~~~~~lg~~~~~--------~g~~~~Ai~~y~~al~~~p~-~  107 (428)
                      ..++..+|.+| ..|++++|+..|++++...|.+. ....++.+|.+++.        .|++++|+..|++++..+|+ .
T Consensus        52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~  131 (261)
T 3qky_A           52 ADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHE  131 (261)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCT
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCch
Confidence            45666677777 89999999999999999988653 34558899999999        99999999999999999997 3


Q ss_pred             ---HHH--------------HHHHHHHHHhcCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHc----------CCH
Q 014256          108 ---VAY--------------ANRAMAYLKLRRFQEAEDDCTEALNLDDR---YIKAYSRRATARKEL----------GKL  157 (428)
Q Consensus       108 ---~~~--------------~nla~~~~~~~~~~eA~~~~~~al~l~p~---~~~a~~~lg~~~~~l----------g~~  157 (428)
                         .+.              +++|.+|..+|+|++|+..|++++..+|+   .+.+++.+|.++..+          |++
T Consensus       132 ~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~  211 (261)
T 3qky_A          132 LVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERY  211 (261)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchH
Confidence               233              88999999999999999999999999998   567999999999988          999


Q ss_pred             HHHHHHHHHHHhhCCCcHHHHH
Q 014256          158 KESIEDSEFALRLEPQNQEIKK  179 (428)
Q Consensus       158 ~eA~~~~~~al~l~P~~~~~~~  179 (428)
                      ++|+..|++++...|+++.+..
T Consensus       212 ~~A~~~~~~~~~~~p~~~~~~~  233 (261)
T 3qky_A          212 RRAVELYERLLQIFPDSPLLRT  233 (261)
T ss_dssp             HHHHHHHHHHHHHCTTCTHHHH
T ss_pred             HHHHHHHHHHHHHCCCChHHHH
Confidence            9999999999999999976543

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.54  E-value=3.7e-13  Score=115.26  Aligned_cols=112  Identities=37%  Similarity=0.654  Sum_probs=104.3

Q ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 014256           73 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATAR  151 (428)
Q Consensus        73 ~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~  151 (428)
                      .+..+..+|..++..|+|++|+.+|.+++..+|. ..++.++|.++..+|+|++|+..+.+++.++|.++.+++++|.++
T Consensus        12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~   91 (166)
T 1a17_A           12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN   91 (166)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            3455889999999999999999999999999998 999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 014256          152 KELGKLKESIEDSEFALRLEPQNQEIKKQLAEV  184 (428)
Q Consensus       152 ~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a  184 (428)
                      ..+|++++|+..|++++.++|++..+...+..+
T Consensus        92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~  124 (166)
T 1a17_A           92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQEC  124 (166)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            999999999999999999999998876544444

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.54  E-value=2.2e-13  Score=114.39  Aligned_cols=111  Identities=32%  Similarity=0.511  Sum_probs=103.9

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 014256           74 ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRAT  149 (428)
Q Consensus        74 a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~  149 (428)
                      +..++.+|..++..|+|++|+.+|++++..+|+    ..+|.++|.+|..+|+|++|+..|.+++.++|+++.+++++|.
T Consensus        28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~  107 (148)
T 2dba_A           28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ  107 (148)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence            444889999999999999999999999999997    6789999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 014256          150 ARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEV  184 (428)
Q Consensus       150 ~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a  184 (428)
                      ++..+|++++|+..|++++.++|++..++..+..+
T Consensus       108 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  142 (148)
T 2dba_A          108 ALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI  142 (148)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence            99999999999999999999999999887665544

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.54  E-value=5.2e-14  Score=130.78  Aligned_cols=161  Identities=17%  Similarity=0.067  Sum_probs=134.9

Q ss_pred             ChhhhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHH
Q 014256           37 SLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRA  114 (428)
Q Consensus        37 ~~~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla  114 (428)
                      ....++..+|.+| ..|++++|+..|.+++..+|.+..+  +..+|.++...|+|++|+.+|.+++.++|. ..++.++|
T Consensus        41 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~--~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la  118 (275)
T 1xnf_A           41 ERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEV--FNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG  118 (275)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHH--HHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHH
Confidence            3445666777777 8999999999999999999987776  789999999999999999999999999998 89999999


Q ss_pred             HHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc--------------------
Q 014256          115 MAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN--------------------  174 (428)
Q Consensus       115 ~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~--------------------  174 (428)
                      .+|..+|++++|+..+.+++.++|++...+...+.+ ...|++++|+..+.+++...|.+                    
T Consensus       119 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  197 (275)
T 1xnf_A          119 IALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLM  197 (275)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHH
Confidence            999999999999999999999999998766655544 55688888888887777766543                    


Q ss_pred             -----------------HHH----------HHHHHHHHHHHHHHHHhchhhhH
Q 014256          175 -----------------QEI----------KKQLAEVKSLYEKEVFQKASKTL  200 (428)
Q Consensus       175 -----------------~~~----------~~~l~~a~~~~~~a~~~~~~~~~  200 (428)
                                       ..+          .+++.+|...|++++..+|....
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  250 (275)
T 1xnf_A          198 ERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV  250 (275)
T ss_dssp             HHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred             HHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence                             111          35678888899999888876543

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.53  E-value=6.2e-14  Score=140.18  Aligned_cols=160  Identities=11%  Similarity=0.130  Sum_probs=132.2

Q ss_pred             hhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHH----
Q 014256           40 SAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANR----  113 (428)
Q Consensus        40 ~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nl----  113 (428)
                      .++..++.+| ..|++++|+..|.+++..+|.+..+  +..+|.+|...|++++|+.+|.+++..+|+ ...+..+    
T Consensus       178 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~  255 (450)
T 2y4t_A          178 ELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEA--FYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVK  255 (450)
T ss_dssp             HHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence            3444455556 7899999999999999988887666  779999999999999999999999999887 5555444    


Q ss_pred             --------HHHHHHhcCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH----
Q 014256          114 --------AMAYLKLRRFQEAEDDCTEALNLDDRYI----KAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI----  177 (428)
Q Consensus       114 --------a~~~~~~~~~~eA~~~~~~al~l~p~~~----~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~----  177 (428)
                              |.++...|++++|+..|.+++.++|+++    .++..+|.++..+|++++|+..+++++.++|++..+    
T Consensus       256 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l  335 (450)
T 2y4t_A          256 KLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDR  335 (450)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence                    8899999999999999999999999884    478888999999999999999999999999988766    


Q ss_pred             ------HHHHHHHHHHHHHHHHhchhhhHh
Q 014256          178 ------KKQLAEVKSLYEKEVFQKASKTLE  201 (428)
Q Consensus       178 ------~~~l~~a~~~~~~a~~~~~~~~~~  201 (428)
                            .+++.+|...|++++.++|.+...
T Consensus       336 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~  365 (450)
T 2y4t_A          336 AEAYLIEEMYDEAIQDYETAQEHNENDQQI  365 (450)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTSSSCHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHhCcchHHH
Confidence                  355778888888888888776553

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.53  E-value=1.2e-13  Score=124.86  Aligned_cols=111  Identities=20%  Similarity=0.167  Sum_probs=104.4

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHH----------------HHHHHHHhcCHHHHHHHHHHHHhcC
Q 014256           75 TSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYAN----------------RAMAYLKLRRFQEAEDDCTEALNLD  137 (428)
Q Consensus        75 ~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~n----------------la~~~~~~~~~~eA~~~~~~al~l~  137 (428)
                      ..+...|..++..|+|++|+.+|++++.++|+ +.+|++                +|.+|..+|++++|+..|++++.++
T Consensus         5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~   84 (208)
T 3urz_A            5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA   84 (208)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence            34778999999999999999999999999998 888888                9999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 014256          138 DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVK  185 (428)
Q Consensus       138 p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~  185 (428)
                      |+++.+++++|.++..+|++++|+..|+++++++|++..++..+..+.
T Consensus        85 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~  132 (208)
T 3urz_A           85 PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYY  132 (208)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999877766543

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.53  E-value=1.1e-13  Score=132.40  Aligned_cols=154  Identities=10%  Similarity=-0.037  Sum_probs=99.0

Q ss_pred             hhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHH--H
Q 014256           40 SAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRA--M  115 (428)
Q Consensus        40 ~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla--~  115 (428)
                      .+...+|..| ..|++++|+..|++     |.+..+  +..+|.++.+.|++++|+..|++++..+|+ .......|  .
T Consensus       102 ~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~--~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~  174 (291)
T 3mkr_A          102 TFLLMAASIYFYDQNPDAALRTLHQ-----GDSLEC--MAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVS  174 (291)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHH--HHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHH
Confidence            3344444444 56666666666665     444444  556777777777777777777777777776 32222222  2


Q ss_pred             HHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHH----------H-H
Q 014256          116 AYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLA----------E-V  184 (428)
Q Consensus       116 ~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~----------~-a  184 (428)
                      .+...|++++|+..|++++..+|+++.+++++|.++..+|++++|...|++++.++|+++.++.++.          + +
T Consensus       175 l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa  254 (291)
T 3mkr_A          175 LAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVT  254 (291)
T ss_dssp             HHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHH
T ss_pred             HHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHH
Confidence            2223367777777777777777777777777777777777777777777777777777777643332          2 4


Q ss_pred             HHHHHHHHHhchhhhH
Q 014256          185 KSLYEKEVFQKASKTL  200 (428)
Q Consensus       185 ~~~~~~a~~~~~~~~~  200 (428)
                      ..++++++..+|.++.
T Consensus       255 ~~~~~~~~~~~P~~~~  270 (291)
T 3mkr_A          255 NRYLSQLKDAHRSHPF  270 (291)
T ss_dssp             HHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHhCCCChH
Confidence            4566677777766654

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.52  E-value=2.3e-14  Score=136.54  Aligned_cols=143  Identities=8%  Similarity=-0.004  Sum_probs=126.5

Q ss_pred             hhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHH
Q 014256           40 SAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAY  117 (428)
Q Consensus        40 ~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~  117 (428)
                      .++...+..+ ..|++++|+..|++++..+|++..+  +..+|.++...|++++|+..|++++..+|+ ...+.+.+..+
T Consensus       118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a--~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l  195 (287)
T 3qou_A          118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEI--GLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIEL  195 (287)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHH--HHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhH--HHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHH
Confidence            3343444445 8899999999999999999998877  779999999999999999999999999998 66677788889


Q ss_pred             HHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc--HHHHHHHHHH
Q 014256          118 LKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN--QEIKKQLAEV  184 (428)
Q Consensus       118 ~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~--~~~~~~l~~a  184 (428)
                      ...+++++|+..+.+++.++|+++.+++++|.++...|++++|+..|.++++++|++  ..++..+..+
T Consensus       196 ~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~  264 (287)
T 3qou_A          196 LXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEI  264 (287)
T ss_dssp             HHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHH
T ss_pred             HhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999998  6665554443

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.52  E-value=2.5e-13  Score=111.67  Aligned_cols=113  Identities=32%  Similarity=0.533  Sum_probs=105.1

Q ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 014256           73 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATAR  151 (428)
Q Consensus        73 ~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~  151 (428)
                      ....++.+|..++..|+|++|+.+|.+++..+|. ..+++++|.++..+|++++|+..|++++.++|.++.+++++|.++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~   94 (133)
T 2lni_A           15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL   94 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            3455889999999999999999999999999998 899999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 014256          152 KELGKLKESIEDSEFALRLEPQNQEIKKQLAEVK  185 (428)
Q Consensus       152 ~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~  185 (428)
                      ..+|++++|+..|++++.++|.+..+...+..+.
T Consensus        95 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~  128 (133)
T 2lni_A           95 EAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCM  128 (133)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            9999999999999999999999888776665543

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.52  E-value=4.4e-14  Score=141.30  Aligned_cols=158  Identities=18%  Similarity=0.090  Sum_probs=96.1

Q ss_pred             hhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHH
Q 014256           40 SAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAY  117 (428)
Q Consensus        40 ~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~  117 (428)
                      .++..++..| ..|++++|+..|++++..+|.+..+  +..+|.+++..|++++|+.+|.+++..+|+ ..++.++|.+|
T Consensus        27 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~--~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  104 (450)
T 2y4t_A           27 EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIA--YYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLL  104 (450)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHH--HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence            3444444444 5666666666666666666655444  556666666666666666666666666666 66666666666


Q ss_pred             HHhcCHHHHHHHHHHHHhcCCCCH---HHHHHH------------HHHHHHcCCHHHHHHHHHHHHhhCCCcHHHH----
Q 014256          118 LKLRRFQEAEDDCTEALNLDDRYI---KAYSRR------------ATARKELGKLKESIEDSEFALRLEPQNQEIK----  178 (428)
Q Consensus       118 ~~~~~~~eA~~~~~~al~l~p~~~---~a~~~l------------g~~~~~lg~~~eA~~~~~~al~l~P~~~~~~----  178 (428)
                      ..+|++++|+..|.+++.++|.+.   .++..+            |.++...|++++|+..|++++.+.|.+..+.    
T Consensus       105 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~  184 (450)
T 2y4t_A          105 LKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRA  184 (450)
T ss_dssp             HHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence            666666666666666666666665   444333            4456666666666666666666666665542    


Q ss_pred             ------HHHHHHHHHHHHHHHhchhhh
Q 014256          179 ------KQLAEVKSLYEKEVFQKASKT  199 (428)
Q Consensus       179 ------~~l~~a~~~~~~a~~~~~~~~  199 (428)
                            +++.+|...|.+++..+|...
T Consensus       185 ~~~~~~g~~~~A~~~~~~~~~~~~~~~  211 (450)
T 2y4t_A          185 ECFIKEGEPRKAISDLKAASKLKNDNT  211 (450)
T ss_dssp             HHHHHTTCGGGGHHHHHHHHHHHCSCH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence                  234445555555555554443

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.52  E-value=3.9e-14  Score=144.78  Aligned_cols=156  Identities=15%  Similarity=0.136  Sum_probs=113.7

Q ss_pred             cCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHh
Q 014256           43 KPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKL  120 (428)
Q Consensus        43 ~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~  120 (428)
                      ..++..| ..|++++|+..|.+++..+|.+..+  +..+|.++...|+|++|+.+|.+++..+|+ ..++.++|.++..+
T Consensus       280 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~  357 (537)
T 3fp2_A          280 IFLALTLADKENSQEFFKFFQKAVDLNPEYPPT--YYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQ  357 (537)
T ss_dssp             HHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            3444445 6777777777777777777776555  667777777777777777777777777777 67777777777777


Q ss_pred             cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH----------------H------
Q 014256          121 RRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI----------------K------  178 (428)
Q Consensus       121 ~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~----------------~------  178 (428)
                      |++++|+..|.+++..+|+++.+++.+|.++...|++++|+..|++++.+.|++...                .      
T Consensus       358 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  437 (537)
T 3fp2_A          358 GKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPT  437 (537)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC---
T ss_pred             CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccch
Confidence            777777777777777777777777777777777777777777777777776643211                2      


Q ss_pred             ----HHHHHHHHHHHHHHHhchhhhH
Q 014256          179 ----KQLAEVKSLYEKEVFQKASKTL  200 (428)
Q Consensus       179 ----~~l~~a~~~~~~a~~~~~~~~~  200 (428)
                          +++.+|...|++++..+|....
T Consensus       438 ~~~~~~~~~A~~~~~~a~~~~p~~~~  463 (537)
T 3fp2_A          438 QLDEEKFNAAIKLLTKACELDPRSEQ  463 (537)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred             hhhHhHHHHHHHHHHHHHHhCCCCHH
Confidence                6677777777777777766554

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.51  E-value=1e-13  Score=144.00  Aligned_cols=129  Identities=12%  Similarity=0.016  Sum_probs=74.5

Q ss_pred             hhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHH
Q 014256           40 SAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAY  117 (428)
Q Consensus        40 ~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~  117 (428)
                      .++..++..| ..|++++|+..|++++..+|.+..+  |..+|.+|.+.|++++|+.+|++++...|. ..+|.++|.+|
T Consensus       374 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  451 (597)
T 2xpi_A          374 VTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPA--WIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQH  451 (597)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence            3344444444 5566666666666666555554444  445566666666666666666666555554 55555556666


Q ss_pred             HHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 014256          118 LKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRL  170 (428)
Q Consensus       118 ~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l  170 (428)
                      .+.|++++|+..|.+++.++|.++.+|..+|.++...|++++|+..|++++.+
T Consensus       452 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  504 (597)
T 2xpi_A          452 MQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLL  504 (597)
T ss_dssp             HHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence            66666666666666666555555555555666666666666666666555555

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.51  E-value=5.6e-14  Score=133.66  Aligned_cols=122  Identities=15%  Similarity=0.176  Sum_probs=117.9

Q ss_pred             cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHH
Q 014256           50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  128 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~  128 (428)
                      ..|++++|+..|.+++..+|.+..+  +..+|.++...|++++|+.+|.+++..+|+ ..++.++|.++...|++++|+.
T Consensus       150 ~~~~~~~A~~~~~~~~~~~~~~~~~--~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  227 (327)
T 3cv0_A          150 APNEYRECRTLLHAALEMNPNDAQL--HASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALD  227 (327)
T ss_dssp             SHHHHHHHHHHHHHHHHHSTTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HcccHHHHHHHHHHHHhhCCCCHHH--HHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence            7889999999999999999987666  789999999999999999999999999998 8999999999999999999999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 014256          129 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQ  173 (428)
Q Consensus       129 ~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~  173 (428)
                      .|.+++.++|++..+++.+|.++..+|++++|+..|++++.+.|.
T Consensus       228 ~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~  272 (327)
T 3cv0_A          228 AYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVG  272 (327)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence            999999999999999999999999999999999999999999998

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.51  E-value=8.9e-15  Score=139.58  Aligned_cols=153  Identities=8%  Similarity=-0.081  Sum_probs=83.1

Q ss_pred             Cccc-cCCCCcchHHHHHhhhhcCCC----CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-------HHHHHHH
Q 014256           46 PSGN-SYSRNYDPVSHISSSLMNEES----TPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-------AVAYANR  113 (428)
Q Consensus        46 ~~~y-~~g~~~~Ai~~~~~al~~~p~----~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-------~~~~~nl  113 (428)
                      +..| ..|++++|+.+|.+++.+.+.    ...+..+.++|.+|...|+|++|+.+|++++.+.+.       +.++.++
T Consensus        44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l  123 (292)
T 1qqe_A           44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL  123 (292)
T ss_dssp             HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3344 556666666666666555321    112444556666666666666666666666665432       2355666


Q ss_pred             HHHHHHh-cCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH-------H--
Q 014256          114 AMAYLKL-RRFQEAEDDCTEALNLDDRY------IKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE-------I--  177 (428)
Q Consensus       114 a~~~~~~-~~~~eA~~~~~~al~l~p~~------~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~-------~--  177 (428)
                      |.+|... |++++|+..|.+|+.+.|.+      ..++.++|.++..+|+|++|+..|++++.+.|++..       .  
T Consensus       124 g~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  203 (292)
T 1qqe_A          124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL  203 (292)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred             HHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence            6666664 66666666666666665533      345566666666666666666666666666554321       0  


Q ss_pred             --------HHHHHHHHHHHHHHHHhchhh
Q 014256          178 --------KKQLAEVKSLYEKEVFQKASK  198 (428)
Q Consensus       178 --------~~~l~~a~~~~~~a~~~~~~~  198 (428)
                              .+++.+|+..|++++.++|..
T Consensus       204 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~  232 (292)
T 1qqe_A          204 KKGLCQLAATDAVAAARTLQEGQSEDPNF  232 (292)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHGGGCC----
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence                    123455556666665555543

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.50  E-value=3e-13  Score=133.85  Aligned_cols=116  Identities=29%  Similarity=0.462  Sum_probs=107.9

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHc----------------cCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 014256           74 ATSEKELGNECFKQKKFKEAIDCYSRSIA----------------LSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNL  136 (428)
Q Consensus        74 a~~~~~lg~~~~~~g~~~~Ai~~y~~al~----------------~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l  136 (428)
                      +..++.+|+.+++.|+|++|+.+|++++.                .+|. ..+|.++|.||+++|+|++|+.+|++++.+
T Consensus       223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  302 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI  302 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence            44588999999999999999999999998                6676 789999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHH
Q 014256          137 DDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYE  189 (428)
Q Consensus       137 ~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~  189 (428)
                      +|+++.+++++|.++..+|++++|+.+|+++++++|++..++..+..+.....
T Consensus       303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~  355 (370)
T 1ihg_A          303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIK  355 (370)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999998888777766544

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.50  E-value=5.4e-14  Score=133.73  Aligned_cols=158  Identities=10%  Similarity=0.124  Sum_probs=98.1

Q ss_pred             hhhhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHc--------------
Q 014256           38 LKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIA--------------  102 (428)
Q Consensus        38 ~~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~--------------  102 (428)
                      ...++..++.++ ..|++++|+..|.+++..+|....+  +..+|.++...|++++|+.+|.+++.              
T Consensus        54 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~--~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~  131 (327)
T 3cv0_A           54 REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAV--HAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQ  131 (327)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC------
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhH
Confidence            334444455555 5666666666666666666655444  45666666666665555555555544              


Q ss_pred             -----------------------------------cCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHH
Q 014256          103 -----------------------------------LSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSR  146 (428)
Q Consensus       103 -----------------------------------~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~  146 (428)
                                                         .+|. ..++..+|.++...|++++|+..+.+++..+|+++.++..
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  211 (327)
T 3cv0_A          132 ADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNK  211 (327)
T ss_dssp             --------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHH
Confidence                                               4444 5556666777777777777777777777777777777777


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH----------HHHHHHHHHHHHHHHHhchh
Q 014256          147 RATARKELGKLKESIEDSEFALRLEPQNQEI----------KKQLAEVKSLYEKEVFQKAS  197 (428)
Q Consensus       147 lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~----------~~~l~~a~~~~~~a~~~~~~  197 (428)
                      +|.++...|++++|+..|++++.+.|++..+          .+++.+|...+++++...|.
T Consensus       212 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~  272 (327)
T 3cv0_A          212 LGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVG  272 (327)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence            7777777777777777777777777766554          23455566666666655544

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.50  E-value=8.1e-13  Score=107.76  Aligned_cols=113  Identities=37%  Similarity=0.540  Sum_probs=104.9

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 014256           74 ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARK  152 (428)
Q Consensus        74 a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~  152 (428)
                      +..+..+|..++..|+|++|+.+|.+++..+|+ ..++.++|.++...|++++|+..+.+++.++|+++.+++.+|.++.
T Consensus        12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (131)
T 2vyi_A           12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS   91 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence            445889999999999999999999999999998 8899999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 014256          153 ELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKS  186 (428)
Q Consensus       153 ~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~  186 (428)
                      .+|++++|+..|++++.+.|++..+...+..+..
T Consensus        92 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~  125 (131)
T 2vyi_A           92 SLNKHVEAVAYYKKALELDPDNETYKSNLKIAEL  125 (131)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence            9999999999999999999999887766665543

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.50  E-value=2.3e-14  Score=136.68  Aligned_cols=139  Identities=12%  Similarity=0.069  Sum_probs=114.4

Q ss_pred             hhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCc----hHHHHHHHHHHHHHh-cCHHHHHHHHHHHHccCCc-------
Q 014256           40 SAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTP----DATSEKELGNECFKQ-KKFKEAIDCYSRSIALSPT-------  106 (428)
Q Consensus        40 ~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~----~a~~~~~lg~~~~~~-g~~~~Ai~~y~~al~~~p~-------  106 (428)
                      .++..+|.+| ..|++++|+.+|++++.+.+...    .+..+.++|.+|... |++++|+.+|++++.+.|.       
T Consensus        78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~  157 (292)
T 1qqe_A           78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALS  157 (292)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHH
Confidence            3445666667 88999999999999999876432    245688999999996 9999999999999998763       


Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHH
Q 014256          107 AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIK-------AYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK  178 (428)
Q Consensus       107 ~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~-------a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~  178 (428)
                      ..++.++|.+|..+|+|++|+..|++++.+.|.+..       +++++|.++..+|++++|+..|++++.++|+.....
T Consensus       158 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~  236 (292)
T 1qqe_A          158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSR  236 (292)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--------
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcH
Confidence            457899999999999999999999999999987643       689999999999999999999999999999988753

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.50  E-value=7.7e-13  Score=108.84  Aligned_cols=103  Identities=16%  Similarity=0.153  Sum_probs=97.8

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHccCCc-H---HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---HHHHHHHHH
Q 014256           77 EKELGNECFKQKKFKEAIDCYSRSIALSPT-A---VAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY---IKAYSRRAT  149 (428)
Q Consensus        77 ~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~---~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~---~~a~~~lg~  149 (428)
                      ++.+|.+++..|+|++|+..|.+++..+|+ .   .+++++|.++..+|+|++|+..|.+++..+|++   +.+++.+|.
T Consensus         5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~   84 (129)
T 2xev_A            5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL   84 (129)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence            678999999999999999999999999987 4   799999999999999999999999999999999   899999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCcHHHHH
Q 014256          150 ARKELGKLKESIEDSEFALRLEPQNQEIKK  179 (428)
Q Consensus       150 ~~~~lg~~~eA~~~~~~al~l~P~~~~~~~  179 (428)
                      ++..+|++++|+..|++++...|++..+..
T Consensus        85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~  114 (129)
T 2xev_A           85 SQYGEGKNTEAQQTLQQVATQYPGSDAARV  114 (129)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTSHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHCCCChHHHH
Confidence            999999999999999999999999887644

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.50  E-value=2.9e-14  Score=122.99  Aligned_cols=113  Identities=12%  Similarity=-0.020  Sum_probs=101.6

Q ss_pred             hcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 014256           87 QKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSE  165 (428)
Q Consensus        87 ~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~  165 (428)
                      .+++-.+-..|.+++.++|+ ..+++++|.+++.+|+|++|+..|++++.++|.++.+|+++|.++..+|+|++|+..|+
T Consensus        15 l~~~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~   94 (151)
T 3gyz_A           15 VIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYA   94 (151)
T ss_dssp             HHHHHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHH
Confidence            33444455678888999998 88999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhCCCcHHH----------HHHHHHHHHHHHHHHHhchhhh
Q 014256          166 FALRLEPQNQEI----------KKQLAEVKSLYEKEVFQKASKT  199 (428)
Q Consensus       166 ~al~l~P~~~~~----------~~~l~~a~~~~~~a~~~~~~~~  199 (428)
                      +++.++|+++.+          .+++++|+..|++++.+.|...
T Consensus        95 ~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A           95 VAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             HHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             HHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            999999999877          4567899999999999887654

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.49  E-value=4.9e-14  Score=137.52  Aligned_cols=131  Identities=15%  Similarity=0.115  Sum_probs=115.9

Q ss_pred             hhhhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCch-------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHcc
Q 014256           38 LKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPD-------------ATSEKELGNECFKQKKFKEAIDCYSRSIAL  103 (428)
Q Consensus        38 ~~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~-------------a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~  103 (428)
                      ...++..+|..| ..|++++|+..|.+++..+|.+..             +..+.++|.+|++.|+|++|+.+|++++.+
T Consensus       146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  225 (336)
T 1p5q_A          146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL  225 (336)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            344555666666 889999999999999999998731             344889999999999999999999999999


Q ss_pred             CCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHH
Q 014256          104 SPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKES-IEDSEFAL  168 (428)
Q Consensus       104 ~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA-~~~~~~al  168 (428)
                      +|+ ..+|+++|.+|..+|+|++|+.+|++++.++|++..++..+|.++..+|++++| ...|.+++
T Consensus       226 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~  292 (336)
T 1p5q_A          226 DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF  292 (336)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            998 999999999999999999999999999999999999999999999999999888 44555544

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.49  E-value=7.8e-13  Score=108.03  Aligned_cols=115  Identities=25%  Similarity=0.431  Sum_probs=104.6

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC-------HHHHH
Q 014256           74 ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY-------IKAYS  145 (428)
Q Consensus        74 a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~-------~~a~~  145 (428)
                      +..++.+|..++..|+|++|+.+|.+++..+|. ..++.++|.+|..+|++++|+..|.+++.++|.+       +.+++
T Consensus         4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (131)
T 1elr_A            4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence            345889999999999999999999999999998 8999999999999999999999999999999887       99999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHH
Q 014256          146 RRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYE  189 (428)
Q Consensus       146 ~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~  189 (428)
                      ++|.++..+|++++|+..|++++.+.| +......+..+...+.
T Consensus        84 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~  126 (131)
T 1elr_A           84 RIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILK  126 (131)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999 5777666666655443

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.49  E-value=2.1e-13  Score=108.49  Aligned_cols=105  Identities=20%  Similarity=0.270  Sum_probs=99.4

Q ss_pred             CCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC--CHHHH
Q 014256           68 EESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDR--YIKAY  144 (428)
Q Consensus        68 ~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~--~~~a~  144 (428)
                      +|.+..+  +..+|.+++..|+|++|+.+|.+++..+|. ..+++++|.++..+|++++|+..+++++.++|.  +..++
T Consensus         2 ~p~~~~~--~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~   79 (112)
T 2kck_A            2 VDQNPEE--YYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVW   79 (112)
T ss_dssp             CCSSTTG--GGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHH
T ss_pred             CCCcHHH--HHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHH
Confidence            4565556  779999999999999999999999999998 889999999999999999999999999999999  99999


Q ss_pred             HHHHHHHHHc-CCHHHHHHHHHHHHhhCCCc
Q 014256          145 SRRATARKEL-GKLKESIEDSEFALRLEPQN  174 (428)
Q Consensus       145 ~~lg~~~~~l-g~~~eA~~~~~~al~l~P~~  174 (428)
                      +.+|.++..+ |++++|+..+++++...|++
T Consensus        80 ~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           80 AAKADALRYIEGKEVEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             HHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence            9999999999 99999999999999999975

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.49  E-value=6.4e-14  Score=143.21  Aligned_cols=155  Identities=16%  Similarity=0.167  Sum_probs=139.4

Q ss_pred             hhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHH
Q 014256           41 AKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYL  118 (428)
Q Consensus        41 a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~  118 (428)
                      ++..+|..+ ..|++++|+..|.+++..+|. ..+  +..+|.++...|++++|+.+|.+++..+|+ +.++.++|.++.
T Consensus       245 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  321 (537)
T 3fp2_A          245 ALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNS--YIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYF  321 (537)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHH--HHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chH--HHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence            345555666 889999999999999999997 444  889999999999999999999999999998 899999999999


Q ss_pred             HhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH----------HHHHHHHHHHH
Q 014256          119 KLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI----------KKQLAEVKSLY  188 (428)
Q Consensus       119 ~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~----------~~~l~~a~~~~  188 (428)
                      ..|++++|+..|.+++.++|.++.+++.+|.++...|++++|+..|++++.+.|++..+          .+++.+|...|
T Consensus       322 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  401 (537)
T 3fp2_A          322 ILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQY  401 (537)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999998766          34567788888


Q ss_pred             HHHHHhchhh
Q 014256          189 EKEVFQKASK  198 (428)
Q Consensus       189 ~~a~~~~~~~  198 (428)
                      ++++...|..
T Consensus       402 ~~a~~~~~~~  411 (537)
T 3fp2_A          402 DIAKRLEEVQ  411 (537)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHcCCcc
Confidence            8887776543

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.49  E-value=4.2e-14  Score=134.42  Aligned_cols=100  Identities=36%  Similarity=0.550  Sum_probs=96.5

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 014256           75 TSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKE  153 (428)
Q Consensus        75 ~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~  153 (428)
                      ..++.+|+.++..|+|++|+.+|.+++..+|+ +.+|+++|.+|..+|+|++|+.+|++++.++|+++.+++++|.++..
T Consensus         5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~   84 (281)
T 2c2l_A            5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE   84 (281)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            34889999999999999999999999999998 99999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhhCCCc
Q 014256          154 LGKLKESIEDSEFALRLEPQN  174 (428)
Q Consensus       154 lg~~~eA~~~~~~al~l~P~~  174 (428)
                      +|++++|+..|++++.++|++
T Consensus        85 ~g~~~~A~~~~~~al~l~p~~  105 (281)
T 2c2l_A           85 MESYDEAIANLQRAYSLAKEQ  105 (281)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHT
T ss_pred             cCCHHHHHHHHHHHHHhCccc
Confidence            999999999999999999865

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.49  E-value=1.4e-13  Score=143.39  Aligned_cols=139  Identities=14%  Similarity=0.011  Sum_probs=129.0

Q ss_pred             cChhhhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHH
Q 014256           36 SSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANR  113 (428)
Q Consensus        36 ~~~~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nl  113 (428)
                      ++...++..+|..| ..|++++|+..|++++..+|.+..+  +..+|.+|...|++++|+.+|+++++++|+ ..+++++
T Consensus        20 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~--~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l   97 (568)
T 2vsy_A           20 PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEA--VARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWL   97 (568)
T ss_dssp             -CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH--HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            44556667777777 8899999999999999999998776  789999999999999999999999999998 8999999


Q ss_pred             HHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhhCCCcHH
Q 014256          114 AMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKEL---GKLKESIEDSEFALRLEPQNQE  176 (428)
Q Consensus       114 a~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~l---g~~~eA~~~~~~al~l~P~~~~  176 (428)
                      |.+|..+|++++|+..|++++.++|++..+++++|.++..+   |++++|...|+++++.+|.+..
T Consensus        98 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~  163 (568)
T 2vsy_A           98 GHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVE  163 (568)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccC
Confidence            99999999999999999999999999999999999999999   9999999999999999998643

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.49  E-value=1.5e-13  Score=117.77  Aligned_cols=127  Identities=13%  Similarity=0.123  Sum_probs=110.8

Q ss_pred             hcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHH
Q 014256           42 KKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLK  119 (428)
Q Consensus        42 ~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~  119 (428)
                      +..+|..+ ..|++++|+..|.+++..+|.+..+  +..+|.++...|+|++|+.+|.+++..+|. ..+++++|.++..
T Consensus        16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~--~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~   93 (166)
T 1a17_A           16 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIY--YGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA   93 (166)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHH--HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            34455555 7899999999999999999987766  789999999999999999999999999998 8999999999999


Q ss_pred             hcCHHHHHHHHHHHHhcCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHhh
Q 014256          120 LRRFQEAEDDCTEALNLDDRYIKAYSRRATA--RKELGKLKESIEDSEFALRL  170 (428)
Q Consensus       120 ~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~--~~~lg~~~eA~~~~~~al~l  170 (428)
                      +|++++|+..|.+++.++|.+..++..++.+  +...|++++|+..+.++..+
T Consensus        94 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  146 (166)
T 1a17_A           94 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV  146 (166)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence            9999999999999999999999888555544  77778888888777765443

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.48  E-value=7.4e-14  Score=141.58  Aligned_cols=134  Identities=12%  Similarity=0.095  Sum_probs=76.6

Q ss_pred             hhhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHH
Q 014256           39 KSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMA  116 (428)
Q Consensus        39 ~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~  116 (428)
                      ..++..++.+| ..|++++|+..|.+++..+|.+..+  +..+|.++...|++++|+.+|.+++..+|. ..++.++|.+
T Consensus       270 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  347 (514)
T 2gw1_A          270 VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSV--YYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACL  347 (514)
T ss_dssp             HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHH--HHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHH--HHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHH
Confidence            34444444544 5555666666666666555555444  445555555556666666666655555555 5555555555


Q ss_pred             HHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 014256          117 YLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN  174 (428)
Q Consensus       117 ~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~  174 (428)
                      +...|++++|+..+.+++..+|.++.+++.+|.++...|++++|+..|++++.+.|++
T Consensus       348 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~  405 (514)
T 2gw1_A          348 AYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKL  405 (514)
T ss_dssp             TTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS
T ss_pred             HHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence            5555555555555555555555555555555555555555555555555555555544

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.48  E-value=4.1e-14  Score=138.23  Aligned_cols=112  Identities=30%  Similarity=0.459  Sum_probs=92.4

Q ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-H-----------------HHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 014256           73 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-A-----------------VAYANRAMAYLKLRRFQEAEDDCTEAL  134 (428)
Q Consensus        73 ~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~-----------------~~~~nla~~~~~~~~~~eA~~~~~~al  134 (428)
                      .+..++.+|+.++..|+|++|+.+|.+++.+.|+ .                 .+|+|+|.||+++|+|++|+.+|.+++
T Consensus       178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al  257 (338)
T 2if4_A          178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL  257 (338)
T ss_dssp             HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3455889999999999999999999999999998 4                 389999999999999999999999999


Q ss_pred             hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 014256          135 NLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEV  184 (428)
Q Consensus       135 ~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a  184 (428)
                      .++|+++.+|+++|.++..+|++++|+.+|+++++++|++..++..+..+
T Consensus       258 ~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l  307 (338)
T 2if4_A          258 TEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRAL  307 (338)
T ss_dssp             HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------
T ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999998886555443

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.48  E-value=8.7e-14  Score=122.18  Aligned_cols=123  Identities=11%  Similarity=-0.011  Sum_probs=108.4

Q ss_pred             cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCcHHHHHHHHHHH-HHhcCHHHHHH
Q 014256           50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAY-LKLRRFQEAED  128 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~~~~~~nla~~~-~~~~~~~eA~~  128 (428)
                      ..|++++|+..|++++..+|++..+  +..+|.++...|++++|+.+|++++..+|++..+..++.+. ...+...+|+.
T Consensus        18 ~~g~~~~A~~~~~~al~~~P~~~~a--~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~a~~   95 (176)
T 2r5s_A           18 QQGEHAQALNVIQTLSDELQSRGDV--KLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAESPELK   95 (176)
T ss_dssp             HTTCHHHHHHHHHTSCHHHHTSHHH--HHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHCCCcHHH--HHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhcccchHHH
Confidence            7899999999999999999998877  77999999999999999999999999988644444455443 23345556899


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 014256          129 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN  174 (428)
Q Consensus       129 ~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~  174 (428)
                      .+++++.++|+++.+++.+|.++...|++++|+..|+++++++|+.
T Consensus        96 ~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~  141 (176)
T 2r5s_A           96 RLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGA  141 (176)
T ss_dssp             HHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTT
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc
Confidence            9999999999999999999999999999999999999999999975

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.47  E-value=2.7e-13  Score=140.70  Aligned_cols=158  Identities=12%  Similarity=0.033  Sum_probs=138.7

Q ss_pred             cChhhhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHH
Q 014256           36 SSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANR  113 (428)
Q Consensus        36 ~~~~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nl  113 (428)
                      ++...++..++.+| ..|++++|+..|.+++...|.+..+  +..+|..|.+.|++++|+.+|.+++.++|. ..+|+.+
T Consensus       336 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l  413 (597)
T 2xpi_A          336 PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVT--WLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGF  413 (597)
T ss_dssp             TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHH--HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            34445556666666 8899999999999999988887666  778999999999999999999999999988 8899999


Q ss_pred             HHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH----------HHHHHH
Q 014256          114 AMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI----------KKQLAE  183 (428)
Q Consensus       114 a~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~----------~~~l~~  183 (428)
                      |.+|...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|++++.+.|.++.+          .+++++
T Consensus       414 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  493 (597)
T 2xpi_A          414 AHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQT  493 (597)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHH
Confidence            9999999999999999999999999999999999999999999999999999999999998766          356788


Q ss_pred             HHHHHHHHHHhc
Q 014256          184 VKSLYEKEVFQK  195 (428)
Q Consensus       184 a~~~~~~a~~~~  195 (428)
                      |...|++++...
T Consensus       494 A~~~~~~~~~~~  505 (597)
T 2xpi_A          494 AINHFQNALLLV  505 (597)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhh
Confidence            899999888873

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.47  E-value=1.3e-13  Score=113.76  Aligned_cols=111  Identities=15%  Similarity=0.117  Sum_probs=100.8

Q ss_pred             hcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHH
Q 014256           42 KKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLK  119 (428)
Q Consensus        42 ~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~  119 (428)
                      +...|..+ ..|++++|+..|.+++..+|.+..+  +..+|.+++..|+|++|+.+|.+++.++|+ ..+|+++|.++..
T Consensus         7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~--~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~   84 (126)
T 3upv_A            7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARG--YSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA   84 (126)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHH--HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            33445555 8899999999999999999998766  889999999999999999999999999999 9999999999999


Q ss_pred             hcCHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHc
Q 014256          120 LRRFQEAEDDCTEALNLD------DRYIKAYSRRATARKEL  154 (428)
Q Consensus       120 ~~~~~eA~~~~~~al~l~------p~~~~a~~~lg~~~~~l  154 (428)
                      +|++++|+..|.+++.++      |.+..++..++.+...+
T Consensus        85 ~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l  125 (126)
T 3upv_A           85 VKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR  125 (126)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred             HhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence            999999999999999999      99999998888877653

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.47  E-value=5.7e-13  Score=119.59  Aligned_cols=124  Identities=25%  Similarity=0.248  Sum_probs=111.7

Q ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 014256           73 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARK  152 (428)
Q Consensus        73 ~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~  152 (428)
                      .+..++.+|..++..|+|++|+.+|.+++  +|++.+|+++|.+|..+|++++|+..|.+++.++|.++.+++++|.++.
T Consensus         5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~   82 (213)
T 1hh8_A            5 EAISLWNEGVLAADKKDWKGALDAFSAVQ--DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY   82 (213)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTSS--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHc--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence            34457899999999999999999999995  5568899999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCcH----------------HH----------HHHHHHHHHHHHHHHHhchhh
Q 014256          153 ELGKLKESIEDSEFALRLEPQNQ----------------EI----------KKQLAEVKSLYEKEVFQKASK  198 (428)
Q Consensus       153 ~lg~~~eA~~~~~~al~l~P~~~----------------~~----------~~~l~~a~~~~~~a~~~~~~~  198 (428)
                      .+|++++|+..|++++.+.|.+.                .+          .+++.+|...|++++..+|..
T Consensus        83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  154 (213)
T 1hh8_A           83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  154 (213)
T ss_dssp             HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence            99999999999999999988765                43          356778889999999888755

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.46  E-value=3.7e-13  Score=115.97  Aligned_cols=95  Identities=20%  Similarity=0.139  Sum_probs=85.4

Q ss_pred             HHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCH----------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 014256           85 FKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRF----------QEAEDDCTEALNLDDRYIKAYSRRATARKE  153 (428)
Q Consensus        85 ~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~----------~eA~~~~~~al~l~p~~~~a~~~lg~~~~~  153 (428)
                      -+.+.|++|+.+|.++++++|+ +.+|+++|.++..++++          ++|+..|++||+++|++..+|+++|.+|..
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~   92 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS   92 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence            3567799999999999999998 99999999999999875          599999999999999999999999999998


Q ss_pred             cC-----------CHHHHHHHHHHHHhhCCCcHHHHH
Q 014256          154 LG-----------KLKESIEDSEFALRLEPQNQEIKK  179 (428)
Q Consensus       154 lg-----------~~~eA~~~~~~al~l~P~~~~~~~  179 (428)
                      +|           ++++|+..|++++.++|++...+.
T Consensus        93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~  129 (158)
T 1zu2_A           93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLK  129 (158)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             hcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHH
Confidence            85           899999999999999999875543

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.45  E-value=4.8e-12  Score=102.21  Aligned_cols=112  Identities=35%  Similarity=0.491  Sum_probs=104.6

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 014256           74 ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARK  152 (428)
Q Consensus        74 a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~  152 (428)
                      +..+..+|.++...|++++|+.+|.+++..+|. ..++.++|.++...|++++|+..+.+++..+|.++.+++.+|.++.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~   88 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY   88 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence            445889999999999999999999999999998 8899999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 014256          153 ELGKLKESIEDSEFALRLEPQNQEIKKQLAEVK  185 (428)
Q Consensus       153 ~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~  185 (428)
                      ..|++++|+..|++++.++|++..+...+..+.
T Consensus        89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  121 (125)
T 1na0_A           89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK  121 (125)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            999999999999999999999998876665543

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.45  E-value=2e-12  Score=105.57  Aligned_cols=121  Identities=31%  Similarity=0.433  Sum_probs=109.5

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 014256           76 SEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKEL  154 (428)
Q Consensus        76 ~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~l  154 (428)
                      .+..+|.++...|++++|+..|.+++..+|. ...+.++|.++...|++++|+..+.+++..+|.+..+++.+|.++...
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~   82 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ   82 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence            3778999999999999999999999999988 889999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhhCCCcHHHH----------HHHHHHHHHHHHHHHhch
Q 014256          155 GKLKESIEDSEFALRLEPQNQEIK----------KQLAEVKSLYEKEVFQKA  196 (428)
Q Consensus       155 g~~~eA~~~~~~al~l~P~~~~~~----------~~l~~a~~~~~~a~~~~~  196 (428)
                      |++++|+..+++++.+.|.+..+.          +++.+|...+.+++..+|
T Consensus        83 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~  134 (136)
T 2fo7_A           83 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP  134 (136)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred             cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence            999999999999999999887653          345667777777766654

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.45  E-value=2e-13  Score=137.58  Aligned_cols=163  Identities=13%  Similarity=0.025  Sum_probs=132.4

Q ss_pred             hhhcCCCccc-cCCCCcchHHHHHhhhhcCC-------CCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccC-------
Q 014256           40 SAKKPSPSGN-SYSRNYDPVSHISSSLMNEE-------STPDATSEKELGNECFKQKKFKEAIDCYSRSIALS-------  104 (428)
Q Consensus        40 ~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p-------~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~-------  104 (428)
                      ..+..+|..| ..|++++|+++|++++.+.+       +...+..+.++|.+|+..|+|++|+.+|++++.+.       
T Consensus        52 ~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~  131 (472)
T 4g1t_A           52 TMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPY  131 (472)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccccc
Confidence            4456667777 89999999999999988621       11234458899999999999999999999999863       


Q ss_pred             -Cc-HHHHHHHHHHHHHhc--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhhCCCcHHH
Q 014256          105 -PT-AVAYANRAMAYLKLR--RFQEAEDDCTEALNLDDRYIKAYSRRATARKE---LGKLKESIEDSEFALRLEPQNQEI  177 (428)
Q Consensus       105 -p~-~~~~~nla~~~~~~~--~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~---lg~~~eA~~~~~~al~l~P~~~~~  177 (428)
                       +. +.++.++|.+++..|  +|++|+.+|++++.++|+++.++..+|.++..   .|++++|+..|++++.++|++..+
T Consensus       132 ~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~  211 (472)
T 4g1t_A          132 RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYL  211 (472)
T ss_dssp             CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHH
T ss_pred             chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHH
Confidence             23 788999998888765  69999999999999999999999999988654   577789999999999999998876


Q ss_pred             H--------------HHHHHHHHHHHHHHHhchhhhHhh
Q 014256          178 K--------------KQLAEVKSLYEKEVFQKASKTLEK  202 (428)
Q Consensus       178 ~--------------~~l~~a~~~~~~a~~~~~~~~~~~  202 (428)
                      .              +.+.+|...+++++..+|......
T Consensus       212 ~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~  250 (472)
T 4g1t_A          212 KVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVL  250 (472)
T ss_dssp             HHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHH
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHH
Confidence            3              345578888999998888776533

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.45  E-value=7.4e-14  Score=142.90  Aligned_cols=133  Identities=14%  Similarity=0.135  Sum_probs=118.5

Q ss_pred             hhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHH
Q 014256           40 SAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAY  117 (428)
Q Consensus        40 ~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~  117 (428)
                      .++..+|..+ ..|++++|+..|++++..+|.+..+  +.++|.+|...|+|++|+.+|+++++++|+ +.+|+++|.+|
T Consensus         7 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~--~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~   84 (477)
T 1wao_1            7 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIY--YGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN   84 (477)
T ss_dssp             TTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHH--HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            4566777777 8999999999999999999987766  889999999999999999999999999998 99999999999


Q ss_pred             HHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHH--HHHcCCHHHHHHHHH-----------HHHhhCCCc
Q 014256          118 LKLRRFQEAEDDCTEALNLDDRYIKAYSRRATA--RKELGKLKESIEDSE-----------FALRLEPQN  174 (428)
Q Consensus       118 ~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~--~~~lg~~~eA~~~~~-----------~al~l~P~~  174 (428)
                      ..+|++++|+..|+++++++|++..++..++.+  +...|++++|+..++           +++.++|++
T Consensus        85 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~  154 (477)
T 1wao_1           85 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY  154 (477)
T ss_dssp             HHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence            999999999999999999999999999999998  888999999999999           888888765

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.44  E-value=3.3e-13  Score=110.94  Aligned_cols=118  Identities=17%  Similarity=0.155  Sum_probs=107.7

Q ss_pred             ChhhhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHH
Q 014256           37 SLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRA  114 (428)
Q Consensus        37 ~~~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla  114 (428)
                      ....++..+|..+ ..|++++|+..|++++..+|.+..+  +..+|.++...|++++|+.+|.+++..+|. ..+++++|
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~--~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la   91 (133)
T 2lni_A           14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKL--YSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA   91 (133)
T ss_dssp             CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHH--HHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH--HHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence            3445556666666 8999999999999999999987666  889999999999999999999999999998 89999999


Q ss_pred             HHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 014256          115 MAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGK  156 (428)
Q Consensus       115 ~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~  156 (428)
                      .++..+|++++|+..+.+++.++|.+..++..++.++..+|+
T Consensus        92 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           92 AALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred             HHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999988774

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.44  E-value=1.7e-13  Score=118.73  Aligned_cols=110  Identities=8%  Similarity=0.105  Sum_probs=100.1

Q ss_pred             hhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHH
Q 014256           40 SAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAY  117 (428)
Q Consensus        40 ~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~  117 (428)
                      .++..+|..| ..|++++|+.+|.+++..+|.+..+  +..+|.+|+..|+|++|+.+|.+++.++|+ ..+|+++|.+|
T Consensus        12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~--~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   89 (164)
T 3sz7_A           12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIY--LSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR   89 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHH--HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            3445566666 8899999999999999999998766  889999999999999999999999999999 99999999999


Q ss_pred             HHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 014256          118 LKLRRFQEAEDDCTEALNLDDRYIKAYSRRATAR  151 (428)
Q Consensus       118 ~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~  151 (428)
                      ..+|++++|+..|.+++.++|++..++++++.+.
T Consensus        90 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~  123 (164)
T 3sz7_A           90 FDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLET  123 (164)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred             HHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            9999999999999999999999999888877643

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.43  E-value=1.9e-13  Score=126.85  Aligned_cols=135  Identities=17%  Similarity=0.129  Sum_probs=118.7

Q ss_pred             ChhhhhcCCCccc-cCCCCcchHHHHHhhhhcC------CCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHcc------
Q 014256           37 SLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNE------ESTPDATSEKELGNECFKQKKFKEAIDCYSRSIAL------  103 (428)
Q Consensus        37 ~~~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~------p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~------  103 (428)
                      ....++..+|..| ..|++++|+.+|.+++...      .....+..+..+|.++...|++++|+.+|.+++.+      
T Consensus        41 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  120 (283)
T 3edt_B           41 DVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG  120 (283)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcC
Confidence            3445667788887 8999999999999999873      22234556889999999999999999999999998      


Q ss_pred             --CCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 014256          104 --SPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNL--------DDRYIKAYSRRATARKELGKLKESIEDSEFALRLE  171 (428)
Q Consensus       104 --~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l--------~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~  171 (428)
                        +|. ..++.++|.+|..+|++++|+..|.+++.+        +|....++..+|.++..+|++++|+..|++++.+.
T Consensus       121 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~  199 (283)
T 3edt_B          121 KFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRA  199 (283)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence              355 788999999999999999999999999999        77888999999999999999999999999999873

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.43  E-value=9.9e-13  Score=126.11  Aligned_cols=123  Identities=9%  Similarity=-0.029  Sum_probs=58.3

Q ss_pred             CCcchHHHHHhhhh-cCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HH-HHHHHHHHHHHhcCHHHHHHH
Q 014256           53 RNYDPVSHISSSLM-NEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AV-AYANRAMAYLKLRRFQEAEDD  129 (428)
Q Consensus        53 ~~~~Ai~~~~~al~-~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~-~~~nla~~~~~~~~~~eA~~~  129 (428)
                      .+++|+..|++++. .+|++..+  |..+|..+...|++++|+.+|++++.+.|. +. +|.++|.++...|++++|...
T Consensus        79 ~~~~A~~~~~rAl~~~~p~~~~~--~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~  156 (308)
T 2ond_A           79 FSDEAANIYERAISTLLKKNMLL--YFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMI  156 (308)
T ss_dssp             HHHHHHHHHHHHHTTTTTTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhCcccHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHH
Confidence            33444555555554 34444333  444555555555555555555555554444 32 455555555555555555555


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCcHHH
Q 014256          130 CTEALNLDDRYIKAYSRRATARKE-LGKLKESIEDSEFALRLEPQNQEI  177 (428)
Q Consensus       130 ~~~al~l~p~~~~a~~~lg~~~~~-lg~~~eA~~~~~~al~l~P~~~~~  177 (428)
                      |.+++..+|.+..+|...+..... .|++++|+..|+++++++|++..+
T Consensus       157 ~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~  205 (308)
T 2ond_A          157 FKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEY  205 (308)
T ss_dssp             HHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Confidence            555555555444444433333222 355555555555555555544433

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.42  E-value=3.8e-13  Score=109.75  Aligned_cols=116  Identities=17%  Similarity=0.123  Sum_probs=106.3

Q ss_pred             hhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHH
Q 014256           40 SAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAY  117 (428)
Q Consensus        40 ~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~  117 (428)
                      .++..++..+ ..|++++|+..|.+++..+|.+..+  +..+|.++...|++++|+.+|.+++..+|+ ..+++++|.++
T Consensus        13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~   90 (131)
T 2vyi_A           13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVY--FCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL   90 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHH--HHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence            3444455555 7899999999999999999987666  789999999999999999999999999998 89999999999


Q ss_pred             HHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q 014256          118 LKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKL  157 (428)
Q Consensus       118 ~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~  157 (428)
                      ..+|++++|+..+.+++.++|.+..++..+|.++..+|++
T Consensus        91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred             HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999875

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.42  E-value=2.6e-12  Score=123.12  Aligned_cols=161  Identities=12%  Similarity=-0.051  Sum_probs=133.5

Q ss_pred             cChhhhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCch-HHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHH
Q 014256           36 SSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPD-ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYAN  112 (428)
Q Consensus        36 ~~~~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~-a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~n  112 (428)
                      +++..+...++..+ ..|++++|+..|++++..+|.+.. +  |..+|..+...|++++|+..|.++++..|. ..+|..
T Consensus        96 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~--~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~  173 (308)
T 2ond_A           96 KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLV--YIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVT  173 (308)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHH--HHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHH
T ss_pred             cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHH--HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            34444455555556 789999999999999999998765 5  889999999999999999999999999988 777777


Q ss_pred             HHHHHHH-hcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCC-cHHHH---------
Q 014256          113 RAMAYLK-LRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRL---EPQ-NQEIK---------  178 (428)
Q Consensus       113 la~~~~~-~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l---~P~-~~~~~---------  178 (428)
                      .|..... .|++++|...|++++.++|+++.+|..+|..+..+|++++|+..|++++..   .|+ ...++         
T Consensus       174 ~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~  253 (308)
T 2ond_A          174 AALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESN  253 (308)
T ss_dssp             HHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence            7666544 799999999999999999999999999999999999999999999999996   554 55663         


Q ss_pred             -HHHHHHHHHHHHHHHhchhh
Q 014256          179 -KQLAEVKSLYEKEVFQKASK  198 (428)
Q Consensus       179 -~~l~~a~~~~~~a~~~~~~~  198 (428)
                       +++..|...+.+++...|..
T Consensus       254 ~g~~~~a~~~~~~a~~~~p~~  274 (308)
T 2ond_A          254 IGDLASILKVEKRRFTAFREE  274 (308)
T ss_dssp             HSCHHHHHHHHHHHHHHTTTT
T ss_pred             cCCHHHHHHHHHHHHHHcccc
Confidence             33456666777777666643

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.42  E-value=8.6e-13  Score=122.29  Aligned_cols=147  Identities=22%  Similarity=0.256  Sum_probs=124.4

Q ss_pred             cCCCCcchHHHHHhhhhcC------CCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccC--------Cc-HHHHHHHH
Q 014256           50 SYSRNYDPVSHISSSLMNE------ESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALS--------PT-AVAYANRA  114 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~------p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~--------p~-~~~~~nla  114 (428)
                      ..|++++|+.+|++++...      .....+..+..+|.+++..|+|++|+.+|.+++.+.        |. ..++.++|
T Consensus        13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~   92 (283)
T 3edt_B           13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA   92 (283)
T ss_dssp             CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence            6789999999999999852      112245558899999999999999999999999873        44 77899999


Q ss_pred             HHHHHhcCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCcHHH-
Q 014256          115 MAYLKLRRFQEAEDDCTEALNL--------DDRYIKAYSRRATARKELGKLKESIEDSEFALRL--------EPQNQEI-  177 (428)
Q Consensus       115 ~~~~~~~~~~eA~~~~~~al~l--------~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l--------~P~~~~~-  177 (428)
                      .+|..+|++++|+..|.+++.+        +|....++.++|.++..+|++++|+..|++++.+        .|....+ 
T Consensus        93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  172 (283)
T 3edt_B           93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK  172 (283)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            9999999999999999999998        5777899999999999999999999999999998        5544433 


Q ss_pred             ---------HHHHHHHHHHHHHHHHhch
Q 014256          178 ---------KKQLAEVKSLYEKEVFQKA  196 (428)
Q Consensus       178 ---------~~~l~~a~~~~~~a~~~~~  196 (428)
                               .+++++|...+.+++...+
T Consensus       173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~  200 (283)
T 3edt_B          173 NNLASCYLKQGKYQDAETLYKEILTRAH  200 (283)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence                     4567788888888877653

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.41  E-value=5.7e-13  Score=108.82  Aligned_cols=93  Identities=15%  Similarity=0.129  Sum_probs=77.3

Q ss_pred             HhcCHHHHHHHHHHHHcc---CCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 014256           86 KQKKFKEAIDCYSRSIAL---SPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESI  161 (428)
Q Consensus        86 ~~g~~~~Ai~~y~~al~~---~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~  161 (428)
                      ..|++++|+.+|++++.+   +|+ ..+++++|.+|..+|+|++|+..|.+++.++|+++.+++++|.++..+|++++|+
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence            357888888899998888   466 7788899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhCCCcHHHH
Q 014256          162 EDSEFALRLEPQNQEIK  178 (428)
Q Consensus       162 ~~~~~al~l~P~~~~~~  178 (428)
                      ..|++++.+.|+++.+.
T Consensus        82 ~~~~~al~~~p~~~~~~   98 (117)
T 3k9i_A           82 ELLLKIIAETSDDETIQ   98 (117)
T ss_dssp             HHHHHHHHHHCCCHHHH
T ss_pred             HHHHHHHHhCCCcHHHH
Confidence            99999999988887654

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.41  E-value=1.9e-12  Score=124.53  Aligned_cols=165  Identities=7%  Similarity=-0.120  Sum_probs=144.0

Q ss_pred             hhhcCCCccccCCCC-cchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhc--CHHHHHHHHHHHHccCCc-HHHHHHHHH
Q 014256           40 SAKKPSPSGNSYSRN-YDPVSHISSSLMNEESTPDATSEKELGNECFKQK--KFKEAIDCYSRSIALSPT-AVAYANRAM  115 (428)
Q Consensus        40 ~a~~~~~~~y~~g~~-~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g--~~~~Ai~~y~~al~~~p~-~~~~~nla~  115 (428)
                      .+...+...+..|.+ ++|+..+.++|.++|.+..+  |+.+|.++...|  ++++++.++..++..+|. ..+|+.|+.
T Consensus        34 ~~~~~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~ta--Wn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~  111 (306)
T 3dra_A           34 QIMGLLLALMKAEEYSERALHITELGINELASHYTI--WIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQL  111 (306)
T ss_dssp             HHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCcHHHHH--HHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHH
Confidence            333333333445555 58999999999999999888  889999999999  999999999999999999 999999999


Q ss_pred             HH----HHh---cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhhCCCcHHHHH-------
Q 014256          116 AY----LKL---RRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLK--ESIEDSEFALRLEPQNQEIKK-------  179 (428)
Q Consensus       116 ~~----~~~---~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~--eA~~~~~~al~l~P~~~~~~~-------  179 (428)
                      ++    ...   +++++++..|++++..+|.+..+|+.++.+...+|.++  +++..+.+++.++|.|..++.       
T Consensus       112 iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~  191 (306)
T 3dra_A          112 IIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLF  191 (306)
T ss_dssp             HHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            99    777   78999999999999999999999999999999999999  999999999999999988842       


Q ss_pred             ---------HHHHHHHHHHHHHHhchhhhHhhhccc
Q 014256          180 ---------QLAEVKSLYEKEVFQKASKTLEKYGKS  206 (428)
Q Consensus       180 ---------~l~~a~~~~~~a~~~~~~~~~~~~~~~  206 (428)
                               .+.++..++.+++..+|.+...+..+.
T Consensus       192 ~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~  227 (306)
T 3dra_A          192 SKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLL  227 (306)
T ss_dssp             SSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred             hccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHH
Confidence                     277788888999999999888665544

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.41  E-value=1.2e-12  Score=119.69  Aligned_cols=136  Identities=8%  Similarity=-0.032  Sum_probs=119.2

Q ss_pred             hhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchH-HHHHHHHHHHHH------------------hcCHHHHHHHHHH
Q 014256           40 SAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDA-TSEKELGNECFK------------------QKKFKEAIDCYSR   99 (428)
Q Consensus        40 ~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a-~~~~~lg~~~~~------------------~g~~~~Ai~~y~~   99 (428)
                      .++..+|.+| ..|++++|+..|++++..+|++..+ .+++.+|.+++.                  .|++++|+..|++
T Consensus        42 ~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  121 (225)
T 2yhc_A           42 QVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSK  121 (225)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHH
Confidence            4566677777 8999999999999999999987653 347889999886                  5799999999999


Q ss_pred             HHccCCc-HHHH-----------------HHHHHHHHHhcCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCCHH
Q 014256          100 SIALSPT-AVAY-----------------ANRAMAYLKLRRFQEAEDDCTEALNLDDRYI---KAYSRRATARKELGKLK  158 (428)
Q Consensus       100 al~~~p~-~~~~-----------------~nla~~~~~~~~~~eA~~~~~~al~l~p~~~---~a~~~lg~~~~~lg~~~  158 (428)
                      ++..+|+ ..++                 ..+|.+|+..|+|++|+..|++++...|+++   .+++++|.++..+|+++
T Consensus       122 ~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~  201 (225)
T 2yhc_A          122 LVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNA  201 (225)
T ss_dssp             HHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcH
Confidence            9999998 3222                 5789999999999999999999999999986   78999999999999999


Q ss_pred             HHHHHHHHHHhhCCCcH
Q 014256          159 ESIEDSEFALRLEPQNQ  175 (428)
Q Consensus       159 eA~~~~~~al~l~P~~~  175 (428)
                      +|+..++.+....|++.
T Consensus       202 ~A~~~~~~l~~~~~~~~  218 (225)
T 2yhc_A          202 QAEKVAKIIAANSSNTL  218 (225)
T ss_dssp             HHHHHHHHHHHCCSCCC
T ss_pred             HHHHHHHHHHhhCCCch
Confidence            99999999999888754

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.41  E-value=1.8e-13  Score=115.82  Aligned_cols=114  Identities=15%  Similarity=0.003  Sum_probs=99.1

Q ss_pred             hhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHH
Q 014256           40 SAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAY  117 (428)
Q Consensus        40 ~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~  117 (428)
                      .++..+|..+ ..|++++|+..|.+++..+|.+..+  |..+|.++...|+|++|+.+|.+++.++|+ +.+++++|.+|
T Consensus        19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~--~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   96 (142)
T 2xcb_A           19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARY--FLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH   96 (142)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHH--HHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence            3444455555 8899999999999999999998777  789999999999999999999999999999 89999999999


Q ss_pred             HHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 014256          118 LKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG  155 (428)
Q Consensus       118 ~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg  155 (428)
                      ..+|++++|+..|++++.++|+++.....+..+...++
T Consensus        97 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~  134 (142)
T 2xcb_A           97 LQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLE  134 (142)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH
Confidence            99999999999999999999988766555555544443

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.40  E-value=4.1e-13  Score=111.81  Aligned_cols=102  Identities=15%  Similarity=0.094  Sum_probs=90.1

Q ss_pred             hhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc--------HHHH
Q 014256           40 SAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT--------AVAY  110 (428)
Q Consensus        40 ~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~--------~~~~  110 (428)
                      .+...+|..+ ..|+|++|+.+|.+++.++|.+..+  +.++|.+|+..|+|++|+.+|.++++++|+        +.+|
T Consensus         9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~--~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~   86 (127)
T 4gcn_A            9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITF--YNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM   86 (127)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH--HHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence            4456677776 8999999999999999999998776  889999999999999999999999998764        3579


Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHH
Q 014256          111 ANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAY  144 (428)
Q Consensus       111 ~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~  144 (428)
                      .++|.++..+|+|++|+..|.+++..+|+ +...
T Consensus        87 ~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~  119 (127)
T 4gcn_A           87 SRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELV  119 (127)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHH
Confidence            99999999999999999999999999885 4433

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.40  E-value=2.2e-13  Score=117.67  Aligned_cols=114  Identities=12%  Similarity=0.057  Sum_probs=97.7

Q ss_pred             hcCCCccc-cCCCCcchHHHHHhhhhc------------------CCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHc
Q 014256           42 KKPSPSGN-SYSRNYDPVSHISSSLMN------------------EESTPDATSEKELGNECFKQKKFKEAIDCYSRSIA  102 (428)
Q Consensus        42 ~~~~~~~y-~~g~~~~Ai~~~~~al~~------------------~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~  102 (428)
                      +...|..+ ..|+|++|+..|.+++..                  +|....  .+.++|.+|++.|+|++|+.+|.+++.
T Consensus        14 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~nla~~~~~~~~~~~A~~~~~~al~   91 (162)
T 3rkv_A           14 LRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIP--LYANMSQCYLNIGDLHEAEETSSEVLK   91 (162)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHH--HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHH--HHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence            34444555 788899999999999998                  444333  488999999999999999999999999


Q ss_pred             cCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHcCCH
Q 014256          103 LSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYI-KAYSRRATARKELGKL  157 (428)
Q Consensus       103 ~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~-~a~~~lg~~~~~lg~~  157 (428)
                      ++|+ +.+|+++|.+|..+|+|++|+.+|.+++.++|++. .+...++.+...++.+
T Consensus        92 ~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~  148 (162)
T 3rkv_A           92 REETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEK  148 (162)
T ss_dssp             HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHH
T ss_pred             cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence            9999 99999999999999999999999999999999998 6677777777665544

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.40  E-value=5.9e-13  Score=113.98  Aligned_cols=108  Identities=12%  Similarity=0.055  Sum_probs=98.5

Q ss_pred             HHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 014256           93 AIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLE  171 (428)
Q Consensus        93 Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~  171 (428)
                      +-..|.+++.++|+ ...++++|.+++..|+|++|+..|.+++.++|.++.+|+.+|.++..+|++++|+..|++++.++
T Consensus         6 ~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~   85 (148)
T 2vgx_A            6 GGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD   85 (148)
T ss_dssp             CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             hhhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            34568899999998 88999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcHHH----------HHHHHHHHHHHHHHHHhchhhhH
Q 014256          172 PQNQEI----------KKQLAEVKSLYEKEVFQKASKTL  200 (428)
Q Consensus       172 P~~~~~----------~~~l~~a~~~~~~a~~~~~~~~~  200 (428)
                      |+++.+          .+++.+|...|++++...|.++.
T Consensus        86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  124 (148)
T 2vgx_A           86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPE  124 (148)
T ss_dssp             TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGG
T ss_pred             CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCc
Confidence            999876          35678899999999998876543

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.40  E-value=6.3e-13  Score=118.74  Aligned_cols=127  Identities=13%  Similarity=0.094  Sum_probs=106.1

Q ss_pred             cCCCccc-cCCCCcchHHHHHhhhhcCCCCch--------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-
Q 014256           43 KPSPSGN-SYSRNYDPVSHISSSLMNEESTPD--------------ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-  106 (428)
Q Consensus        43 ~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~--------------a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-  106 (428)
                      ...|..+ ..|++++|+..|.+++...|....              ...+.++|.+++..|+|++|+.+|.+++.++|. 
T Consensus        42 ~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~  121 (198)
T 2fbn_A           42 KEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNN  121 (198)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccc
Confidence            3344455 788999999999999999887651              245889999999999999999999999999998 


Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHh
Q 014256          107 AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESI-EDSEFALR  169 (428)
Q Consensus       107 ~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~-~~~~~al~  169 (428)
                      ..+++++|.+|..+|+|++|+..|.+++.++|++..++..++.++..+|++.++. ..|...+.
T Consensus       122 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~  185 (198)
T 2fbn_A          122 VKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD  185 (198)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999999999888776 44444443

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.39  E-value=1.2e-12  Score=132.75  Aligned_cols=163  Identities=14%  Similarity=0.107  Sum_probs=136.6

Q ss_pred             cChhhhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHH
Q 014256           36 SSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANR  113 (428)
Q Consensus        36 ~~~~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nl  113 (428)
                      ++...++..++..| ..|++++|+..|.+++..+|.+..+  +..+|.++...|++++|+.+|.+++..+|. ..++.++
T Consensus       301 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  378 (514)
T 2gw1_A          301 SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFP--YIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFF  378 (514)
T ss_dssp             TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHH--HHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHH
Confidence            44455666677777 8889999999999999988887666  778899999999999999999999988887 7888889


Q ss_pred             HHHHHHhcCHHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHH---cCCHHHHHHHHHHHHhhCCCcHHH-------
Q 014256          114 AMAYLKLRRFQEAEDDCTEALNLDDRYIK------AYSRRATARKE---LGKLKESIEDSEFALRLEPQNQEI-------  177 (428)
Q Consensus       114 a~~~~~~~~~~eA~~~~~~al~l~p~~~~------a~~~lg~~~~~---lg~~~eA~~~~~~al~l~P~~~~~-------  177 (428)
                      |.++...|++++|+..+.+++.++|.+..      +++.+|.++..   .|++++|+..|++++.++|++..+       
T Consensus       379 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~  458 (514)
T 2gw1_A          379 AEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQM  458 (514)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence            99999999999999999999988888754      88899999998   899999999999999999888765       


Q ss_pred             ---HHHHHHHHHHHHHHHHhchhhhH
Q 014256          178 ---KKQLAEVKSLYEKEVFQKASKTL  200 (428)
Q Consensus       178 ---~~~l~~a~~~~~~a~~~~~~~~~  200 (428)
                         .+++.+|...|++++..+|.+..
T Consensus       459 ~~~~g~~~~A~~~~~~a~~~~~~~~~  484 (514)
T 2gw1_A          459 KLQQEDIDEAITLFEESADLARTMEE  484 (514)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCSSHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHhccccHH
Confidence               35677888888888888887655

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.39  E-value=4.2e-13  Score=136.51  Aligned_cols=125  Identities=14%  Similarity=0.165  Sum_probs=108.5

Q ss_pred             hhhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCch-------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHccC
Q 014256           39 KSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPD-------------ATSEKELGNECFKQKKFKEAIDCYSRSIALS  104 (428)
Q Consensus        39 ~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~-------------a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~  104 (428)
                      ..++...|..| ..|+|++|+..|.+++..+|.+..             +..+.++|.+|++.|+|++|+.+|++++.++
T Consensus       268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~  347 (457)
T 1kt0_A          268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD  347 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence            34455566666 899999999999999999988731             4458899999999999999999999999999


Q ss_pred             Cc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 014256          105 PT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIED  163 (428)
Q Consensus       105 p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~  163 (428)
                      |+ ..+|+++|.+|+.+|+|++|+.+|.+++.++|++..++..++.++..+|++++|...
T Consensus       348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~  407 (457)
T 1kt0_A          348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRR  407 (457)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            98 999999999999999999999999999999999999999999999999998877643

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.38  E-value=4.9e-13  Score=126.99  Aligned_cols=140  Identities=14%  Similarity=0.063  Sum_probs=114.8

Q ss_pred             hhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHH
Q 014256           41 AKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYL  118 (428)
Q Consensus        41 a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~  118 (428)
                      ++...|..+ ..|++++|+..|.+++..+|.+..+  +.++|.+|...|+|++|+..|++++.++|+ ..+++++|.+|.
T Consensus         6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~--~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~   83 (281)
T 2c2l_A            6 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVY--YTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL   83 (281)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHH--HHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHH--HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            344455555 8899999999999999999987766  789999999999999999999999999998 999999999999


Q ss_pred             HhcCHHHHHHHHHHHHhcCCCCH-----HHHH--HHH----------------------HHHHHcCCHHHHHHHHHHHHh
Q 014256          119 KLRRFQEAEDDCTEALNLDDRYI-----KAYS--RRA----------------------TARKELGKLKESIEDSEFALR  169 (428)
Q Consensus       119 ~~~~~~eA~~~~~~al~l~p~~~-----~a~~--~lg----------------------~~~~~lg~~~eA~~~~~~al~  169 (428)
                      .+|++++|+..|.+++.++|++.     .++.  +++                      ......|++++|+..++++++
T Consensus        84 ~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~A~~~~~~al~  163 (281)
T 2c2l_A           84 EMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHE  163 (281)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHHHHTTTSGGGT
T ss_pred             HcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            99999999999999999998652     1111  111                      011135788999999999999


Q ss_pred             hCCCcHHHHHHHH
Q 014256          170 LEPQNQEIKKQLA  182 (428)
Q Consensus       170 l~P~~~~~~~~l~  182 (428)
                      ++|++......+.
T Consensus       164 ~~p~~~~~~~~l~  176 (281)
T 2c2l_A          164 GHEDDGHIRAQQA  176 (281)
T ss_dssp             TTSCHHHHTHHHH
T ss_pred             cccchhhhhhHHH
Confidence            9998876654443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.38  E-value=4.6e-12  Score=132.26  Aligned_cols=153  Identities=10%  Similarity=0.078  Sum_probs=138.8

Q ss_pred             cCCCC-cchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcC----------HHHHHHHHHHHHccCCc-HHHHHHHHHHH
Q 014256           50 SYSRN-YDPVSHISSSLMNEESTPDATSEKELGNECFKQKK----------FKEAIDCYSRSIALSPT-AVAYANRAMAY  117 (428)
Q Consensus        50 ~~g~~-~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~----------~~~Ai~~y~~al~~~p~-~~~~~nla~~~  117 (428)
                      ..|++ ++|+..+.+++..+|.+..+  |+.+|.++...|+          +++|+.+|.+++..+|. ..+|++|+.++
T Consensus        40 ~~~~~~eeal~~~~~~l~~nP~~~ta--W~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l  117 (567)
T 1dce_A           40 QAGELDESVLELTSQILGANPDFATL--WNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL  117 (567)
T ss_dssp             HTTCCSHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HcCCCCHHHHHHHHHHHHHCchhHHH--HHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            33444 56799999999999999888  8899999999998          99999999999999999 99999999999


Q ss_pred             HHhc--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCcHHHH----------------
Q 014256          118 LKLR--RFQEAEDDCTEALNLDDRYIKAYSRRATARKELG-KLKESIEDSEFALRLEPQNQEIK----------------  178 (428)
Q Consensus       118 ~~~~--~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg-~~~eA~~~~~~al~l~P~~~~~~----------------  178 (428)
                      .+++  +|++|+..|++++++||.+..||..++.+...+| .++++++++.++++++|.+..++                
T Consensus       118 ~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~  197 (567)
T 1dce_A          118 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS  197 (567)
T ss_dssp             HTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred             HHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence            9999  7799999999999999999999999999999999 99999999999999999998772                


Q ss_pred             --------HHHHHHHHHHHHHHHhchhhhHhhhc
Q 014256          179 --------KQLAEVKSLYEKEVFQKASKTLEKYG  204 (428)
Q Consensus       179 --------~~l~~a~~~~~~a~~~~~~~~~~~~~  204 (428)
                              +.++++.+++.+++..+|.+...+..
T Consensus       198 ~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y  231 (567)
T 1dce_A          198 GPQGRLPENVLLKELELVQNAFFTDPNDQSAWFY  231 (567)
T ss_dssp             SSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHH
T ss_pred             cccccccHHHHHHHHHHHHHHHhhCCCCccHHHH
Confidence                    34677888889999999998775543

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.38  E-value=6.2e-13  Score=125.42  Aligned_cols=134  Identities=19%  Similarity=0.162  Sum_probs=116.3

Q ss_pred             hhhhhcCCCccc-cCCCCcchHHHHHhhhhcC------CCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccC------
Q 014256           38 LKSAKKPSPSGN-SYSRNYDPVSHISSSLMNE------ESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALS------  104 (428)
Q Consensus        38 ~~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~------p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~------  104 (428)
                      ...++..++..| ..|++++|+.+|.+++...      .....+..+..+|.++...|++++|+.+|.+++.+.      
T Consensus        68 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  147 (311)
T 3nf1_A           68 VATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK  147 (311)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCC
Confidence            334556677777 8999999999999999873      222345568899999999999999999999999873      


Q ss_pred             --Cc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 014256          105 --PT-AVAYANRAMAYLKLRRFQEAEDDCTEALNL--------DDRYIKAYSRRATARKELGKLKESIEDSEFALRLE  171 (428)
Q Consensus       105 --p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l--------~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~  171 (428)
                        |. ..++.++|.++...|++++|+..+.+++.+        +|....++..+|.++..+|++++|+..|++++.+.
T Consensus       148 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  225 (311)
T 3nf1_A          148 DHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRA  225 (311)
T ss_dssp             TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence              33 778999999999999999999999999998        77788899999999999999999999999999863

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.37  E-value=2.6e-12  Score=129.42  Aligned_cols=148  Identities=11%  Similarity=0.027  Sum_probs=96.0

Q ss_pred             cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHh--------
Q 014256           50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKL--------  120 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~--------  120 (428)
                      ..+++++|+.+|++++..+|....+  +..+|.+|...|++++|+.+|.++++.+|+ +.++.++|.+|...        
T Consensus       225 ~~~~~~~a~~~~~~al~~~~~~~~~--~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~  302 (472)
T 4g1t_A          225 EGEEEGEGEKLVEEALEKAPGVTDV--LRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLR  302 (472)
T ss_dssp             -----CHHHHHHHHHHHHCSSCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             hhhHHHHHHHHHHHHHHhCccHHHH--HHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHH
Confidence            3455666666666666666665555  556777777777777777777777777776 66677777666543        


Q ss_pred             -----------cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH------------
Q 014256          121 -----------RRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI------------  177 (428)
Q Consensus       121 -----------~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~------------  177 (428)
                                 +.+++|+..+.+++.++|.+..+++.+|.++..+|++++|+..|++++.++|++...            
T Consensus       303 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~  382 (472)
T 4g1t_A          303 ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQL  382 (472)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence                       235666777777777777777777777777777777777777777777777765432            


Q ss_pred             --HHHHHHHHHHHHHHHHhchhhh
Q 014256          178 --KKQLAEVKSLYEKEVFQKASKT  199 (428)
Q Consensus       178 --~~~l~~a~~~~~~a~~~~~~~~  199 (428)
                        .+.+++|+..|.+++.++|...
T Consensus       383 ~~~~~~~~Ai~~y~kal~i~~~~~  406 (472)
T 4g1t_A          383 YQMKCEDKAIHHFIEGVKINQKSR  406 (472)
T ss_dssp             HTSSCHHHHHHHHHHHHHSCCCCH
T ss_pred             HHCCCHHHHHHHHHHHHhcCcccH
Confidence              1224567777777777665543

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.37  E-value=1.8e-13  Score=133.64  Aligned_cols=136  Identities=12%  Similarity=0.048  Sum_probs=84.3

Q ss_pred             hhcCCCccc-cCCCCcchHHHHHhhhhcCCCCch---------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHccC
Q 014256           41 AKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPD---------------ATSEKELGNECFKQKKFKEAIDCYSRSIALS  104 (428)
Q Consensus        41 a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~---------------a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~  104 (428)
                      ++...|..+ ..|+|++|+..|.+++...|.+..               ..++.++|.+|++.|+|++|+.+|++++.++
T Consensus       181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~  260 (338)
T 2if4_A          181 RRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEE  260 (338)
T ss_dssp             HHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            344455555 889999999999999999887541               0248899999999999999999999999999


Q ss_pred             Cc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhhCCCcHH
Q 014256          105 PT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATAR-KELGKLKESIEDSEFALRLEPQNQE  176 (428)
Q Consensus       105 p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~-~~lg~~~eA~~~~~~al~l~P~~~~  176 (428)
                      |+ ..+|+++|.+|..+|+|++|+.+|.+++.++|++..++..++.+. ...+..+++...|.+++...|+++.
T Consensus       261 p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~~  334 (338)
T 2if4_A          261 EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGA  334 (338)
T ss_dssp             TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------------
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence            98 999999999999999999999999999999999999999999884 4566778899999999999998764

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.37  E-value=1.2e-12  Score=106.86  Aligned_cols=100  Identities=10%  Similarity=0.081  Sum_probs=85.8

Q ss_pred             CCCCcchHHHHHhhhhc---CCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHH
Q 014256           51 YSRNYDPVSHISSSLMN---EESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEA  126 (428)
Q Consensus        51 ~g~~~~Ai~~~~~al~~---~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA  126 (428)
                      .|++++|+.+|++++..   +|.+..+  +..+|.+|+..|+|++|+.+|+++++++|+ +.+++++|.++..+|++++|
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~--~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A   80 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAEC--YLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQG   80 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHH
Confidence            58999999999999999   4665555  889999999999999999999999999999 99999999999999999999


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHH
Q 014256          127 EDDCTEALNLDDRYIKAYSRRATARK  152 (428)
Q Consensus       127 ~~~~~~al~l~p~~~~a~~~lg~~~~  152 (428)
                      +..|.+++..+|+++.+......+..
T Consensus        81 ~~~~~~al~~~p~~~~~~~~~~ai~~  106 (117)
T 3k9i_A           81 VELLLKIIAETSDDETIQSYKQAILF  106 (117)
T ss_dssp             HHHHHHHHHHHCCCHHHHHTHHHHHH
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            99999999999999876544443333

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.36  E-value=1.7e-11  Score=118.84  Aligned_cols=152  Identities=11%  Similarity=0.085  Sum_probs=135.3

Q ss_pred             cCCCCc-chHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcC----------HHHHHHHHHHHHccCCc-HHHHHHHHHHH
Q 014256           50 SYSRNY-DPVSHISSSLMNEESTPDATSEKELGNECFKQKK----------FKEAIDCYSRSIALSPT-AVAYANRAMAY  117 (428)
Q Consensus        50 ~~g~~~-~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~----------~~~Ai~~y~~al~~~p~-~~~~~nla~~~  117 (428)
                      ..|++. +|+..+..++..+|.+..+  |+.++.++...|.          +.+++.++..++..+|. ..+|+.++.++
T Consensus        41 ~~~e~s~eaL~~t~~~L~~nP~~yta--Wn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL  118 (331)
T 3dss_A           41 QAGELDESVLELTSQILGANPDFATL--WNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL  118 (331)
T ss_dssp             HTTCCSHHHHHHHHHHHTTCTTCHHH--HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HcCCCCHHHHHHHHHHHHHCchhHHH--HHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            446665 7999999999999999888  8889999888776          79999999999999998 99999999999


Q ss_pred             HHhcC--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCcHHHH----------------
Q 014256          118 LKLRR--FQEAEDDCTEALNLDDRYIKAYSRRATARKELGK-LKESIEDSEFALRLEPQNQEIK----------------  178 (428)
Q Consensus       118 ~~~~~--~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~-~~eA~~~~~~al~l~P~~~~~~----------------  178 (428)
                      ..+++  +++++..|.+++.+||.|..+|..++.+...+|. ++++++++.+++..+|.|..++                
T Consensus       119 ~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~  198 (331)
T 3dss_A          119 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS  198 (331)
T ss_dssp             HHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC--
T ss_pred             hccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcccc
Confidence            99994  9999999999999999999999999999999999 6999999999999999998873                


Q ss_pred             --------HHHHHHHHHHHHHHHhchhhhHhhh
Q 014256          179 --------KQLAEVKSLYEKEVFQKASKTLEKY  203 (428)
Q Consensus       179 --------~~l~~a~~~~~~a~~~~~~~~~~~~  203 (428)
                              +.+.++..++.+++..+|.+...+.
T Consensus       199 ~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~  231 (331)
T 3dss_A          199 GPQGRLPENVLLKELELVQNAFFTDPNDQSAWF  231 (331)
T ss_dssp             ----CCCHHHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred             ccccccchHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence                    3456677777788888888777654

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.36  E-value=2.1e-13  Score=130.99  Aligned_cols=163  Identities=7%  Similarity=-0.002  Sum_probs=128.0

Q ss_pred             ccChhhhhcCC---Cccc-cCCCCcchHHHHHhhhhcCCCC----chHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCC-
Q 014256           35 SSSLKSAKKPS---PSGN-SYSRNYDPVSHISSSLMNEEST----PDATSEKELGNECFKQKKFKEAIDCYSRSIALSP-  105 (428)
Q Consensus        35 ~~~~~~a~~~~---~~~y-~~g~~~~Ai~~~~~al~~~p~~----~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p-  105 (428)
                      .+++..|...+   +..| ..|++++|+.+|.+++.+.+..    ..+..+.++|.+|...|+|++|+.+|++++.+.+ 
T Consensus        29 ~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~  108 (307)
T 2ifu_A           29 KPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVE  108 (307)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence            46777666433   4445 7899999999999998876432    2345688999999999999999999999998742 


Q ss_pred             ----c--HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 014256          106 ----T--AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY------IKAYSRRATARKELGKLKESIEDSEFALRLEPQ  173 (428)
Q Consensus       106 ----~--~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~------~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~  173 (428)
                          .  ..++.++|.+|.. |++++|+..|.+++.+.+..      ..++.++|.++..+|+|++|+..|++++.+.|.
T Consensus       109 ~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~  187 (307)
T 2ifu_A          109 NGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKE  187 (307)
T ss_dssp             TTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence                1  5678899999988 99999999999999887653      578899999999999999999999999988654


Q ss_pred             cHH------H----------HHHHHHHHHHHHHHHHhchhhh
Q 014256          174 NQE------I----------KKQLAEVKSLYEKEVFQKASKT  199 (428)
Q Consensus       174 ~~~------~----------~~~l~~a~~~~~~a~~~~~~~~  199 (428)
                      +..      .          .+++.+|...|++++ ..|...
T Consensus       188 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~  228 (307)
T 2ifu_A          188 MENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFS  228 (307)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTST
T ss_pred             cCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCC
Confidence            321      1          256778888888888 777543

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.36  E-value=6e-13  Score=114.88  Aligned_cols=101  Identities=12%  Similarity=0.117  Sum_probs=88.8

Q ss_pred             CCccc-cCCCCcchHHHHHhhhhcCCCC-------ch---HHHHHHHHHHHHHhcCHHHHHHHHHHHHcc-------CCc
Q 014256           45 SPSGN-SYSRNYDPVSHISSSLMNEEST-------PD---ATSEKELGNECFKQKKFKEAIDCYSRSIAL-------SPT  106 (428)
Q Consensus        45 ~~~~y-~~g~~~~Ai~~~~~al~~~p~~-------~~---a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~-------~p~  106 (428)
                      .|..+ ..|+|++|+..|++++.++|.+       ..   +.+|.++|.++.+.|+|++|+.+|+++|++       +|+
T Consensus        17 ~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd   96 (159)
T 2hr2_A           17 DAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQD   96 (159)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTST
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCc
Confidence            34444 7799999999999999999983       22   336899999999999999999999999999       999


Q ss_pred             -HHHH----HHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHH
Q 014256          107 -AVAY----ANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYS  145 (428)
Q Consensus       107 -~~~~----~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~  145 (428)
                       ..+|    +++|.++..+|+|++|+.+|+++++++|.+..++-
T Consensus        97 ~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~  140 (159)
T 2hr2_A           97 EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETP  140 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCT
T ss_pred             hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence             8889    99999999999999999999999999998754433

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.35  E-value=9.4e-13  Score=124.16  Aligned_cols=160  Identities=21%  Similarity=0.226  Sum_probs=132.9

Q ss_pred             cChhhhhcCCCccc-cCCCCcchHHHHHhhhhc--------CCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccC--
Q 014256           36 SSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMN--------EESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALS--  104 (428)
Q Consensus        36 ~~~~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~--------~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~--  104 (428)
                      +....++..++..| ..|++++|+.+|.+++..        .|.  .+..+..+|.++...|++++|+.+|.+++.+.  
T Consensus        24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  101 (311)
T 3nf1_A           24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPD--VATMLNILALVYRDQNKYKDAANLLNDALAIREK  101 (311)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHH--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            34445666777777 899999999999999985        333  34558899999999999999999999999872  


Q ss_pred             ------Cc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 014256          105 ------PT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLD--------DRYIKAYSRRATARKELGKLKESIEDSEFALR  169 (428)
Q Consensus       105 ------p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~--------p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~  169 (428)
                            |. ..++.++|.+|..+|++++|+..+.+++.+.        |....++.++|.++...|++++|+..|++++.
T Consensus       102 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~  181 (311)
T 3nf1_A          102 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALE  181 (311)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                  33 7789999999999999999999999999884        66678899999999999999999999999999


Q ss_pred             h--------CCCcHHH----------HHHHHHHHHHHHHHHHhchh
Q 014256          170 L--------EPQNQEI----------KKQLAEVKSLYEKEVFQKAS  197 (428)
Q Consensus       170 l--------~P~~~~~----------~~~l~~a~~~~~~a~~~~~~  197 (428)
                      +        .|....+          .+++.+|...+++++...+.
T Consensus       182 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  227 (311)
T 3nf1_A          182 IYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHE  227 (311)
T ss_dssp             HHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            8        4444333          45677888888888776543

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.35  E-value=1.4e-12  Score=133.37  Aligned_cols=114  Identities=35%  Similarity=0.647  Sum_probs=106.7

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 014256           76 SEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKEL  154 (428)
Q Consensus        76 ~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~l  154 (428)
                      .++.+|..++..|+|++|+.+|+++++++|+ +.+|+++|.+|..+|+|++|+.+|+++++++|+++.+++++|.++..+
T Consensus         8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~   87 (477)
T 1wao_1            8 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL   87 (477)
T ss_dssp             TSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            3668899999999999999999999999998 999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHH
Q 014256          155 GKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYE  189 (428)
Q Consensus       155 g~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~  189 (428)
                      |++++|+..|+++++++|++..+...+..+..++.
T Consensus        88 g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~  122 (477)
T 1wao_1           88 GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVK  122 (477)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999988877777655544

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.34  E-value=2.4e-12  Score=126.82  Aligned_cols=151  Identities=8%  Similarity=0.070  Sum_probs=124.9

Q ss_pred             CCccc-cCCCCcchHHHHHhhhhcC---CC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCC-------c-HHHHH
Q 014256           45 SPSGN-SYSRNYDPVSHISSSLMNE---ES-TPDATSEKELGNECFKQKKFKEAIDCYSRSIALSP-------T-AVAYA  111 (428)
Q Consensus        45 ~~~~y-~~g~~~~Ai~~~~~al~~~---p~-~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p-------~-~~~~~  111 (428)
                      .|..+ ..|++++|+.+|.+++...   ++ ...+..+..+|.+|+..|++++|+.+|.+++.+.+       . ..++.
T Consensus       109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  188 (383)
T 3ulq_A          109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS  188 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence            34444 8899999999999999872   22 22456689999999999999999999999999732       2 56899


Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----C-CCcHHH--
Q 014256          112 NRAMAYLKLRRFQEAEDDCTEALNLDDRY------IKAYSRRATARKELGKLKESIEDSEFALRL-----E-PQNQEI--  177 (428)
Q Consensus       112 nla~~~~~~~~~~eA~~~~~~al~l~p~~------~~a~~~lg~~~~~lg~~~eA~~~~~~al~l-----~-P~~~~~--  177 (428)
                      ++|.+|..+|+|++|+..|.+++.+.+..      ..+++++|.++..+|++++|+..|++++.+     + |....+  
T Consensus       189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  268 (383)
T 3ulq_A          189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF  268 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence            99999999999999999999999886543      358999999999999999999999999994     4 554443  


Q ss_pred             --------HHHHHHHHHHHHHHHHhc
Q 014256          178 --------KKQLAEVKSLYEKEVFQK  195 (428)
Q Consensus       178 --------~~~l~~a~~~~~~a~~~~  195 (428)
                              .+++.+|...+++++...
T Consensus       269 ~l~~~~~~~g~~~~A~~~~~~al~~~  294 (383)
T 3ulq_A          269 LITQIHYKLGKIDKAHEYHSKGMAYS  294 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence                    355778888888887765

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.33  E-value=2e-12  Score=106.68  Aligned_cols=91  Identities=15%  Similarity=0.060  Sum_probs=81.5

Q ss_pred             cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHH
Q 014256           50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  128 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~  128 (428)
                      ..|++++|+..|++++..+|.+..+  |+.+|.++...|++++|+.+|+++++++|+ ..+++++|.+|..+|++++|+.
T Consensus        29 ~~g~~~~A~~~~~~al~~~P~~~~a--~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~  106 (121)
T 1hxi_A           29 KLANLAEAALAFEAVCQKEPEREEA--WRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALA  106 (121)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            7899999999999999999998877  889999999999999999999999999998 8999999999999999999999


Q ss_pred             HHHHHHhcCCCCHH
Q 014256          129 DCTEALNLDDRYIK  142 (428)
Q Consensus       129 ~~~~al~l~p~~~~  142 (428)
                      .|.+++.++|.+..
T Consensus       107 ~~~~al~~~P~~~~  120 (121)
T 1hxi_A          107 SLRAWLLSQPQYEQ  120 (121)
T ss_dssp             HHHHHHC-------
T ss_pred             HHHHHHHhCcCCCC
Confidence            99999999998754

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.33  E-value=1.1e-11  Score=116.05  Aligned_cols=150  Identities=14%  Similarity=0.097  Sum_probs=109.9

Q ss_pred             hhhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHH----hcCHHHHHHHHHHHHccCCcHHHHHHH
Q 014256           39 KSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFK----QKKFKEAIDCYSRSIALSPTAVAYANR  113 (428)
Q Consensus        39 ~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~----~g~~~~Ai~~y~~al~~~p~~~~~~nl  113 (428)
                      ..+...+|..| ..|++++|+.+|++++.  +.+..+  +..+|.+|..    .|++++|+.+|.++++.+ ++.+++++
T Consensus         6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a--~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~l   80 (273)
T 1ouv_A            6 PKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSG--CFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-YSNGCHLL   80 (273)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHH--HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHH--HHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-CHHHHHHH
Confidence            34445555555 67788888888888887  444444  6788888888    888888888888888775 47778888


Q ss_pred             HHHHHH----hcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCcHHH--------
Q 014256          114 AMAYLK----LRRFQEAEDDCTEALNLDDRYIKAYSRRATARKE----LGKLKESIEDSEFALRLEPQNQEI--------  177 (428)
Q Consensus       114 a~~~~~----~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~----lg~~~eA~~~~~~al~l~P~~~~~--------  177 (428)
                      |.+|..    .+++++|+..|++++..+  ++.+++++|.++..    .|++++|+..|++++.+.+.....        
T Consensus        81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~  158 (273)
T 1ouv_A           81 GNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDA  158 (273)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHc
Confidence            888888    888888888888888774  77888888888888    888888888888888876422111        


Q ss_pred             ----HHHHHHHHHHHHHHHHhc
Q 014256          178 ----KKQLAEVKSLYEKEVFQK  195 (428)
Q Consensus       178 ----~~~l~~a~~~~~~a~~~~  195 (428)
                          .+++.+|...|++++...
T Consensus       159 ~~~~~~~~~~A~~~~~~a~~~~  180 (273)
T 1ouv_A          159 GRGTPKDLKKALASYDKACDLK  180 (273)
T ss_dssp             TSSSCCCHHHHHHHHHHHHHTT
T ss_pred             CCCCCCCHHHHHHHHHHHHHCC
Confidence                123556666666666543

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.33  E-value=6.1e-12  Score=100.64  Aligned_cols=107  Identities=16%  Similarity=0.167  Sum_probs=98.1

Q ss_pred             CCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhc
Q 014256           44 PSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLR  121 (428)
Q Consensus        44 ~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~  121 (428)
                      .+|..+ ..|++++|+..|++++..+|.+..+  +..+|.++...|+|++|+.+|.+++..+|+ ..++.++|.++..+|
T Consensus         9 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~   86 (118)
T 1elw_A            9 EKGNKALSVGNIDDALQCYSEAIKLDPHNHVL--YSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN   86 (118)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHHHCCCcHHH--HHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHh
Confidence            344445 7899999999999999999987766  789999999999999999999999999998 899999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 014256          122 RFQEAEDDCTEALNLDDRYIKAYSRRATARK  152 (428)
Q Consensus       122 ~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~  152 (428)
                      ++++|+..+.+++.++|+++.++..++.+..
T Consensus        87 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  117 (118)
T 1elw_A           87 RFEEAKRTYEEGLKHEANNPQLKEGLQNMEA  117 (118)
T ss_dssp             CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence            9999999999999999999999999887753

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.33  E-value=6.7e-12  Score=101.34  Aligned_cols=114  Identities=25%  Similarity=0.339  Sum_probs=103.4

Q ss_pred             hhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHH
Q 014256           40 SAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAY  117 (428)
Q Consensus        40 ~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~  117 (428)
                      .++..++..+ ..|++++|+..|.+++...|....+  +..+|.++...|++++|+.+|.+++..+|. ..++.++|.++
T Consensus        10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~   87 (125)
T 1na0_A           10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA--WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY   87 (125)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHH--HHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence            3444555566 8899999999999999999887665  789999999999999999999999999998 88999999999


Q ss_pred             HHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 014256          118 LKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG  155 (428)
Q Consensus       118 ~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg  155 (428)
                      ...|++++|+..+.+++.++|+++.++..+|.++...|
T Consensus        88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999988765

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.32  E-value=1.6e-12  Score=103.77  Aligned_cols=93  Identities=30%  Similarity=0.508  Sum_probs=86.1

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC------HHHHHH
Q 014256           74 ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY------IKAYSR  146 (428)
Q Consensus        74 a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~------~~a~~~  146 (428)
                      +..++.+|.+++..|+|++|+.+|++++.++|+ +.+|+++|.++..+|+|++|+..|.+++.++|++      ..++++
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~   83 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR   83 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence            445889999999999999999999999999998 9999999999999999999999999999999999      999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHH
Q 014256          147 RATARKELGKLKESIEDSEF  166 (428)
Q Consensus       147 lg~~~~~lg~~~eA~~~~~~  166 (428)
                      +|.++..+|++++|+..+++
T Consensus        84 ~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           84 LELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             HHHHHHHHHCCCCCSSSSSS
T ss_pred             HHHHHHHHHhHhhhHhHHHH
Confidence            99999999988887766543

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.31  E-value=1.9e-11  Score=119.15  Aligned_cols=166  Identities=7%  Similarity=-0.059  Sum_probs=144.2

Q ss_pred             ChhhhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhc-CHHHHHHHHHHHHccCCc-HHHHHHH
Q 014256           37 SLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQK-KFKEAIDCYSRSIALSPT-AVAYANR  113 (428)
Q Consensus        37 ~~~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g-~~~~Ai~~y~~al~~~p~-~~~~~nl  113 (428)
                      +|..+...+...+ ..+..++|+..+.++|..+|.+..+  |+.+|.++...| .+++++.++..++..+|. ..+|+.|
T Consensus        52 ~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~yta--Wn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR  129 (349)
T 3q7a_A           52 EYKDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTV--WQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHR  129 (349)
T ss_dssp             HHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHH--HHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            3444444433334 3445568999999999999999888  889999999999 599999999999999999 9999999


Q ss_pred             HHHHHHh-c-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHhhCCCcHHHHH----
Q 014256          114 AMAYLKL-R-RFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLK--------ESIEDSEFALRLEPQNQEIKK----  179 (428)
Q Consensus       114 a~~~~~~-~-~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~--------eA~~~~~~al~l~P~~~~~~~----  179 (428)
                      +.++..+ + ++++++..|.+++.++|.|..+|+.++.+...+|.++        ++++.+.+++.++|.|..++.    
T Consensus       130 ~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~  209 (349)
T 3q7a_A          130 LLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWY  209 (349)
T ss_dssp             HHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            9999998 8 9999999999999999999999999999999999988        999999999999999988732    


Q ss_pred             -------------HHHHHHHHHHHHHHhchhhhHhhhc
Q 014256          180 -------------QLAEVKSLYEKEVFQKASKTLEKYG  204 (428)
Q Consensus       180 -------------~l~~a~~~~~~a~~~~~~~~~~~~~  204 (428)
                                   .+.++..++.+++..+|.+...+..
T Consensus       210 lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Y  247 (349)
T 3q7a_A          210 LRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNY  247 (349)
T ss_dssp             HHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence                         2577888889999999998876654

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.31  E-value=2.6e-12  Score=106.78  Aligned_cols=114  Identities=12%  Similarity=0.013  Sum_probs=99.7

Q ss_pred             hhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHH
Q 014256           40 SAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAY  117 (428)
Q Consensus        40 ~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~  117 (428)
                      .++..+|..+ ..|++++|+..|.+++..+|.+..+  +..+|.+++..|+|++|+.+|.+++.++|+ ..+|+++|.++
T Consensus        10 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~   87 (137)
T 3q49_B           10 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVY--YTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   87 (137)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHH--HHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence            3445556666 8899999999999999999997766  889999999999999999999999999999 99999999999


Q ss_pred             HHhcCHHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHHcC
Q 014256          118 LKLRRFQEAEDDCTEALNLDDR-----YIKAYSRRATARKELG  155 (428)
Q Consensus       118 ~~~~~~~eA~~~~~~al~l~p~-----~~~a~~~lg~~~~~lg  155 (428)
                      ..+|++++|+..|.+++.++|+     +..+...+..+.....
T Consensus        88 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~  130 (137)
T 3q49_B           88 LEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRW  130 (137)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998     6666666666555443

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.30  E-value=7.7e-12  Score=118.88  Aligned_cols=151  Identities=15%  Similarity=0.091  Sum_probs=109.3

Q ss_pred             CCccccCCCCcchHHHHHhhhhcCCCCch----HHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-------HHHHHHH
Q 014256           45 SPSGNSYSRNYDPVSHISSSLMNEESTPD----ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-------AVAYANR  113 (428)
Q Consensus        45 ~~~~y~~g~~~~Ai~~~~~al~~~p~~~~----a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-------~~~~~nl  113 (428)
                      +...+..|++++|+..|.+++...+....    ...+..+|..+...|+|++|+.+|.+++.+.+.       ..++.++
T Consensus        82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l  161 (293)
T 3u3w_A           82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI  161 (293)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence            44445778888888888888887766544    666778888888888888888888888875432       3467888


Q ss_pred             HHHHHHhcCHHHHHHHHHHHHhc-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc------HHH---
Q 014256          114 AMAYLKLRRFQEAEDDCTEALNL-------DDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN------QEI---  177 (428)
Q Consensus       114 a~~~~~~~~~~eA~~~~~~al~l-------~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~------~~~---  177 (428)
                      |.+|..+|+|++|+..|.+++..       .+....+++++|.+|..+|+|++|+..+++++.+.+..      ..+   
T Consensus       162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~  241 (293)
T 3u3w_A          162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ  241 (293)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence            88888888888888888888842       22335678888888888888888888888888776432      222   


Q ss_pred             -------HH-HHHHHHHHHHHHHHhc
Q 014256          178 -------KK-QLAEVKSLYEKEVFQK  195 (428)
Q Consensus       178 -------~~-~l~~a~~~~~~a~~~~  195 (428)
                             .+ .+++|...|++++.+.
T Consensus       242 lg~~~~~~g~~~~~A~~~~~~Al~i~  267 (293)
T 3u3w_A          242 RGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence                   23 2467777777777654

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.30  E-value=4e-12  Score=111.48  Aligned_cols=132  Identities=11%  Similarity=-0.024  Sum_probs=112.7

Q ss_pred             ccChhhhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHH-HHhcCHHHHHHHHHHHHccCCc-HHHHH
Q 014256           35 SSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNEC-FKQKKFKEAIDCYSRSIALSPT-AVAYA  111 (428)
Q Consensus        35 ~~~~~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~-~~~g~~~~Ai~~y~~al~~~p~-~~~~~  111 (428)
                      .++...++..++.+| ..|++++|+..|++++..+| +...  +...|.+. ...++..+|+.+|++++..+|+ +.+++
T Consensus        36 ~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~--~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~  112 (176)
T 2r5s_A           36 LQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSY--KSLIAKLELHQQAAESPELKRLEQELAANPDNFELAC  112 (176)
T ss_dssp             HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHH--HHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHH--HHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHH
Confidence            355666777777777 89999999999999999998 6544  33445443 3334555689999999999998 99999


Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 014256          112 NRAMAYLKLRRFQEAEDDCTEALNLDDRY--IKAYSRRATARKELGKLKESIEDSEFALR  169 (428)
Q Consensus       112 nla~~~~~~~~~~eA~~~~~~al~l~p~~--~~a~~~lg~~~~~lg~~~eA~~~~~~al~  169 (428)
                      ++|.++...|++++|+..|.+++.++|++  ..++.++|.++..+|++++|+..|++++.
T Consensus       113 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~  172 (176)
T 2r5s_A          113 ELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY  172 (176)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence            99999999999999999999999999976  66999999999999999999999999874

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.30  E-value=4.1e-12  Score=110.96  Aligned_cols=118  Identities=15%  Similarity=0.172  Sum_probs=102.7

Q ss_pred             HHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHHcCCH--
Q 014256           82 NECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATA-RKELGKL--  157 (428)
Q Consensus        82 ~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~-~~~lg~~--  157 (428)
                      ..+...|+|++|+..|.+++..+|. +.+|+.+|.+|...|++++|+..|.+++.++|.++.+++.+|.+ +...|++  
T Consensus        18 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~   97 (177)
T 2e2e_A           18 HQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT   97 (177)
T ss_dssp             CCCC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred             hhhhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence            3456789999999999999999998 99999999999999999999999999999999999999999999 8899999  


Q ss_pred             HHHHHHHHHHHhhCCCcHHH----------HHHHHHHHHHHHHHHHhchhhh
Q 014256          158 KESIEDSEFALRLEPQNQEI----------KKQLAEVKSLYEKEVFQKASKT  199 (428)
Q Consensus       158 ~eA~~~~~~al~l~P~~~~~----------~~~l~~a~~~~~~a~~~~~~~~  199 (428)
                      ++|+..|++++.++|++..+          .+++.+|...|.+++..+|...
T Consensus        98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  149 (177)
T 2e2e_A           98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRI  149 (177)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTS
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCc
Confidence            99999999999999999876          3456778888888888887653

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.29  E-value=4e-12  Score=109.52  Aligned_cols=90  Identities=14%  Similarity=0.134  Sum_probs=83.5

Q ss_pred             cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCH----------HHHHHHHHHHHccCCc-HHHHHHHHHHHH
Q 014256           50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKF----------KEAIDCYSRSIALSPT-AVAYANRAMAYL  118 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~----------~~Ai~~y~~al~~~p~-~~~~~nla~~~~  118 (428)
                      +.+.+++|+..|++++..+|.+..+  |.++|.++...+++          ++|+.+|+++|+++|+ ..+|+++|.+|.
T Consensus        14 r~~~feeA~~~~~~Ai~l~P~~aea--~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~   91 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSNPLDADN--LTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT   91 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHCCCCHHH--HHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence            5577899999999999999998877  88999999999875          5999999999999999 999999999999


Q ss_pred             Hhc-----------CHHHHHHHHHHHHhcCCCCH
Q 014256          119 KLR-----------RFQEAEDDCTEALNLDDRYI  141 (428)
Q Consensus       119 ~~~-----------~~~eA~~~~~~al~l~p~~~  141 (428)
                      .+|           +|++|+.+|++|+.++|++.
T Consensus        92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~  125 (158)
T 1zu2_A           92 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT  125 (158)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             HhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence            985           89999999999999999985

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.28  E-value=1.1e-11  Score=103.84  Aligned_cols=115  Identities=13%  Similarity=0.066  Sum_probs=100.7

Q ss_pred             hhhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCc-hHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHH
Q 014256           39 KSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTP-DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAM  115 (428)
Q Consensus        39 ~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~-~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~  115 (428)
                      ...+...+..+ ..|++++|+..|++++..+|... ....+..+|.+++..|+|++|+.+|.+++.++|+ ..+++++|.
T Consensus        28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~  107 (148)
T 2dba_A           28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ  107 (148)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence            34445556666 89999999999999999998751 1344889999999999999999999999999998 899999999


Q ss_pred             HHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 014256          116 AYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKE  153 (428)
Q Consensus       116 ~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~  153 (428)
                      ++..+|++++|+..|.+++.++|++..++..++.+...
T Consensus       108 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  145 (148)
T 2dba_A          108 ALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP  145 (148)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred             HHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence            99999999999999999999999999999888876543

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.28  E-value=8.9e-12  Score=122.68  Aligned_cols=131  Identities=10%  Similarity=0.092  Sum_probs=114.5

Q ss_pred             hcCCCccc-cCCCCcchHHHHHhhhhcCCCCc-----hHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-------HH
Q 014256           42 KKPSPSGN-SYSRNYDPVSHISSSLMNEESTP-----DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-------AV  108 (428)
Q Consensus        42 ~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~-----~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-------~~  108 (428)
                      +..+|.+| ..|++++|+.+|.+++.+.+...     .+.++..+|.+|...|+|++|+.+|.+++.+.+.       ..
T Consensus       146 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  225 (383)
T 3ulq_A          146 FFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGR  225 (383)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHH
Confidence            34445556 88999999999999999855432     3456889999999999999999999999987532       46


Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHh-----cC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 014256          109 AYANRAMAYLKLRRFQEAEDDCTEALN-----LD-DRYIKAYSRRATARKELGKLKESIEDSEFALRLEP  172 (428)
Q Consensus       109 ~~~nla~~~~~~~~~~eA~~~~~~al~-----l~-p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P  172 (428)
                      ++.++|.+|..+|++++|+..+.+++.     .+ |..+.+++++|.++..+|++++|...+++++.+.+
T Consensus       226 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  295 (383)
T 3ulq_A          226 TLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ  295 (383)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            899999999999999999999999999     56 88899999999999999999999999999999854

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.28  E-value=4.6e-12  Score=125.29  Aligned_cols=120  Identities=13%  Similarity=0.140  Sum_probs=107.5

Q ss_pred             hcCCCccc-cCCCCcchHHHHHhhhh----------------cCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccC
Q 014256           42 KKPSPSGN-SYSRNYDPVSHISSSLM----------------NEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALS  104 (428)
Q Consensus        42 ~~~~~~~y-~~g~~~~Ai~~~~~al~----------------~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~  104 (428)
                      +..+|..+ ..|++++|+..|++++.                .+|...  ..+.++|.+|++.|+|++|+.+|+++++++
T Consensus       226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~--~~~~nla~~~~~~g~~~~A~~~~~~al~~~  303 (370)
T 1ihg_A          226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVAL--SCVLNIGACKLKMSDWQGAVDSCLEALEID  303 (370)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHH--HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHH--HHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence            44455556 88999999999999998                444433  448899999999999999999999999999


Q ss_pred             Cc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 014256          105 PT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIED  163 (428)
Q Consensus       105 p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~  163 (428)
                      |+ +.+|+++|.+|..+|+|++|+.+|+++++++|++..++..++.++..+++++++...
T Consensus       304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~  363 (370)
T 1ihg_A          304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA  363 (370)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            98 999999999999999999999999999999999999999999999999998887653

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.28  E-value=2.6e-11  Score=113.39  Aligned_cols=115  Identities=14%  Similarity=0.153  Sum_probs=55.2

Q ss_pred             CCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHH----hcCHHHHHHHHHHHHccCCcHHHHHHHHHHHHH----hcC
Q 014256           51 YSRNYDPVSHISSSLMNEESTPDATSEKELGNECFK----QKKFKEAIDCYSRSIALSPTAVAYANRAMAYLK----LRR  122 (428)
Q Consensus        51 ~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~----~g~~~~Ai~~y~~al~~~p~~~~~~nla~~~~~----~~~  122 (428)
                      .+++++|+.+|++++..+  +..+  +..+|.+|..    .+++++|+.+|+++++.+ ...+++++|.+|..    .++
T Consensus        91 ~~~~~~A~~~~~~a~~~~--~~~a--~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~~~~~~~~  165 (273)
T 1ouv_A           91 SQNTNKALQYYSKACDLK--YAEG--CASLGGIYHDGKVVTRDFKKAVEYFTKACDLN-DGDGCTILGSLYDAGRGTPKD  165 (273)
T ss_dssp             CCCHHHHHHHHHHHHHTT--CHHH--HHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCC
T ss_pred             ccCHHHHHHHHHHHHHcC--CccH--HHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC-cHHHHHHHHHHHHcCCCCCCC
Confidence            444555555555554442  2222  4445555554    455555555555555443 23444445555554    455


Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCC
Q 014256          123 FQEAEDDCTEALNLDDRYIKAYSRRATARKE----LGKLKESIEDSEFALRLEP  172 (428)
Q Consensus       123 ~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~----lg~~~eA~~~~~~al~l~P  172 (428)
                      +++|+..|++++..  .++.+++++|.++..    .+++++|+..|++++.+.|
T Consensus       166 ~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~  217 (273)
T 1ouv_A          166 LKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN  217 (273)
T ss_dssp             HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC
Confidence            55555555555444  234445555555555    5555555555555555443

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.27  E-value=8.9e-11  Score=113.78  Aligned_cols=143  Identities=9%  Similarity=-0.002  Sum_probs=131.2

Q ss_pred             CcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcC--HHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcC-HHHHHHH
Q 014256           54 NYDPVSHISSSLMNEESTPDATSEKELGNECFKQKK--FKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRR-FQEAEDD  129 (428)
Q Consensus        54 ~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~--~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~-~~eA~~~  129 (428)
                      +.+++.++..++..+|.+..+  |..++.++...|+  +++++.++.++++.+|. ..+|.+++.+....|. ++++++.
T Consensus        90 l~~EL~~~~~~L~~~PKny~a--W~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~  167 (331)
T 3dss_A           90 VKAELGFLESCLRVNPKSYGT--WHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAF  167 (331)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHH--HHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence            678999999999999999888  8899999999984  99999999999999998 9999999999999998 6999999


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHhhCCCcHHHH-----------------
Q 014256          130 CTEALNLDDRYIKAYSRRATARKEL--------------GKLKESIEDSEFALRLEPQNQEIK-----------------  178 (428)
Q Consensus       130 ~~~al~l~p~~~~a~~~lg~~~~~l--------------g~~~eA~~~~~~al~l~P~~~~~~-----------------  178 (428)
                      +++++..+|.|..+|+.++.++..+              +.++++++.+.+++.++|+|..++                 
T Consensus       168 ~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~  247 (331)
T 3dss_A          168 TDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELS  247 (331)
T ss_dssp             HHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCC
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccc
Confidence            9999999999999999999999988              568999999999999999999885                 


Q ss_pred             ----HHHHHHHHHHHHHHHhchhh
Q 014256          179 ----KQLAEVKSLYEKEVFQKASK  198 (428)
Q Consensus       179 ----~~l~~a~~~~~~a~~~~~~~  198 (428)
                          +.++++++.+.+.++..|.+
T Consensus       248 ~~~~~~l~~el~~~~elle~~pd~  271 (331)
T 3dss_A          248 VEKSTVLQSELESCKELQELEPEN  271 (331)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             hHHHHHHHHHHHHHHHHHhhCccc
Confidence                35677788888888888765

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.27  E-value=2.5e-11  Score=115.32  Aligned_cols=126  Identities=14%  Similarity=0.073  Sum_probs=106.4

Q ss_pred             CCccc-cCCCCcchHHHHHhhhhcCCCCc----hHHHHHHHHHHHHHhcCHHHHHHHHHHHHcc------C-Cc-HHHHH
Q 014256           45 SPSGN-SYSRNYDPVSHISSSLMNEESTP----DATSEKELGNECFKQKKFKEAIDCYSRSIAL------S-PT-AVAYA  111 (428)
Q Consensus        45 ~~~~y-~~g~~~~Ai~~~~~al~~~p~~~----~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~------~-p~-~~~~~  111 (428)
                      ++..+ ..+++++|+.+|.+++...+...    .+..+..+|.+|...|+|++|+.+|.+++..      + +. ..+++
T Consensus       121 l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  200 (293)
T 3u3w_A          121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY  200 (293)
T ss_dssp             HHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHH
T ss_pred             HHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHH
Confidence            44444 67899999999999999654332    2445889999999999999999999999952      2 12 66899


Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCC-HHHHHHHHHHHHhh
Q 014256          112 NRAMAYLKLRRFQEAEDDCTEALNLDDRY------IKAYSRRATARKELGK-LKESIEDSEFALRL  170 (428)
Q Consensus       112 nla~~~~~~~~~~eA~~~~~~al~l~p~~------~~a~~~lg~~~~~lg~-~~eA~~~~~~al~l  170 (428)
                      |+|.+|..+|+|++|+..+.+++.+.+..      +.+++++|.++..+|+ +++|+..|++++.+
T Consensus       201 nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i  266 (293)
T 3u3w_A          201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence            99999999999999999999999887544      7899999999999995 79999999998864

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.27  E-value=5.7e-12  Score=120.90  Aligned_cols=134  Identities=11%  Similarity=0.046  Sum_probs=114.8

Q ss_pred             hhcCCCccc-cCCCCcchHHHHHhhhhcCCCC----chHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-------HH
Q 014256           41 AKKPSPSGN-SYSRNYDPVSHISSSLMNEEST----PDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-------AV  108 (428)
Q Consensus        41 a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~----~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-------~~  108 (428)
                      ++..+|..| ..|++++|+.+|++++.+.+..    ..+..+.++|.+|.. |+|++|+.+|++++.+.+.       ..
T Consensus        78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~  156 (307)
T 2ifu_A           78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAE  156 (307)
T ss_dssp             HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHH
Confidence            445566667 7899999999999999885432    235568899999999 9999999999999998652       56


Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q 014256          109 AYANRAMAYLKLRRFQEAEDDCTEALNLDDRY------IKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE  176 (428)
Q Consensus       109 ~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~------~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~  176 (428)
                      ++.++|.+|..+|+|++|+..|++++.+.|.+      ..+++.+|.++..+|++++|+..|++++ ++|....
T Consensus       157 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~  229 (307)
T 2ifu_A          157 LIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSG  229 (307)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCC
Confidence            79999999999999999999999999987644      3578899999999999999999999999 9997654

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.27  E-value=6.9e-12  Score=119.30  Aligned_cols=133  Identities=14%  Similarity=0.016  Sum_probs=120.1

Q ss_pred             ccChhhhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHH
Q 014256           35 SSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYAN  112 (428)
Q Consensus        35 ~~~~~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~n  112 (428)
                      .++...++..++..| ..|++++|+..|++++..+|+....  ....+..+...+++.+|+..|++++..+|+ ..++++
T Consensus       147 ~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~--~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~  224 (287)
T 3qou_A          147 SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQ--GLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQ  224 (287)
T ss_dssp             TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHH--HHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHH--HHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHH
Confidence            455556666677777 8999999999999999999965433  667888899999999999999999999999 999999


Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 014256          113 RAMAYLKLRRFQEAEDDCTEALNLDDRY--IKAYSRRATARKELGKLKESIEDSEFALR  169 (428)
Q Consensus       113 la~~~~~~~~~~eA~~~~~~al~l~p~~--~~a~~~lg~~~~~lg~~~eA~~~~~~al~  169 (428)
                      +|.++...|++++|+..|.+++..+|++  ..++.++|.++..+|+.++|...|++++.
T Consensus       225 la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~  283 (287)
T 3qou_A          225 LALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY  283 (287)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence            9999999999999999999999999998  89999999999999999999999999875

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.26  E-value=8e-11  Score=95.26  Aligned_cols=98  Identities=15%  Similarity=0.140  Sum_probs=82.2

Q ss_pred             HHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 014256           92 EAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRL  170 (428)
Q Consensus        92 ~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l  170 (428)
                      .|+.+|.+++..+|+ +.+++++|.+|...|++++|+..|.+++.++|.++.+++.+|.++..+|++++|+..|++++.+
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~   82 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA   82 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            578889999999998 8889999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCc--HHHHHHHHHHHHHHH
Q 014256          171 EPQN--QEIKKQLAEVKSLYE  189 (428)
Q Consensus       171 ~P~~--~~~~~~l~~a~~~~~  189 (428)
                      .|.+  ......+..+...+.
T Consensus        83 ~~~~~~~~~~~~l~~~l~~l~  103 (115)
T 2kat_A           83 AQSRGDQQVVKELQVFLRRLA  103 (115)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHH
T ss_pred             ccccccHHHHHHHHHHHHHhc
Confidence            8743  344444444444333

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.25  E-value=2.3e-11  Score=119.69  Aligned_cols=120  Identities=10%  Similarity=0.043  Sum_probs=65.3

Q ss_pred             cCCCCcchHHHHHhhhhcCCC----CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCC-------c-HHHHHHHHHHH
Q 014256           50 SYSRNYDPVSHISSSLMNEES----TPDATSEKELGNECFKQKKFKEAIDCYSRSIALSP-------T-AVAYANRAMAY  117 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~----~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p-------~-~~~~~nla~~~  117 (428)
                      ..|++++|+.+|.+++...+.    ...+..+..+|.+|+..|+++.|+.+|.+++.+.+       . +.++.++|.+|
T Consensus       113 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y  192 (378)
T 3q15_A          113 DQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNY  192 (378)
T ss_dssp             HTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHH
T ss_pred             HHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHH
Confidence            455556666666665554221    12344455666666666666666666666655421       1 33455566666


Q ss_pred             HHhcCHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 014256          118 LKLRRFQEAEDDCTEALNLDD------RYIKAYSRRATARKELGKLKESIEDSEFALR  169 (428)
Q Consensus       118 ~~~~~~~eA~~~~~~al~l~p------~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~  169 (428)
                      ..+|+|++|+..|.+++.+.+      ....+++++|.++..+|++++|+..|++++.
T Consensus       193 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~  250 (378)
T 3q15_A          193 DDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAK  250 (378)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            666666666666666655422      1134555566666666666666666666665

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.25  E-value=2.9e-11  Score=99.23  Aligned_cols=107  Identities=12%  Similarity=-0.005  Sum_probs=92.9

Q ss_pred             cCCCCcchHHHHHhhhhcCCCCch-HHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc----HHHHHHHHHHHHHhcCHH
Q 014256           50 SYSRNYDPVSHISSSLMNEESTPD-ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQ  124 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~~~~-a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~nla~~~~~~~~~~  124 (428)
                      ..|++++|+..|.+++..+|.+.. ...++.+|.+++..|+|++|+.+|.+++..+|+    +.+++++|.+|..+|+++
T Consensus        14 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~   93 (129)
T 2xev_A           14 KNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNT   93 (129)
T ss_dssp             HTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHH
T ss_pred             HhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHH
Confidence            789999999999999999998762 133789999999999999999999999999987    677999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 014256          125 EAEDDCTEALNLDDRYIKAYSRRATARKELGK  156 (428)
Q Consensus       125 eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~  156 (428)
                      +|+..|++++..+|++..+...+..+....++
T Consensus        94 ~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~~  125 (129)
T 2xev_A           94 EAQQTLQQVATQYPGSDAARVAQERLQSIRLG  125 (129)
T ss_dssp             HHHHHHHHHHHHSTTSHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHCCCChHHHHHHHHHHHHHhh
Confidence            99999999999999998877666655544443

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.24  E-value=4.8e-11  Score=114.71  Aligned_cols=152  Identities=11%  Similarity=-0.032  Sum_probs=134.5

Q ss_pred             hccChhhhhcCCCccc-cCC--CCcchHHHHHhhhhcCCCCchHHHHHHHHHHH----HHh---cCHHHHHHHHHHHHcc
Q 014256           34 VSSSLKSAKKPSPSGN-SYS--RNYDPVSHISSSLMNEESTPDATSEKELGNEC----FKQ---KKFKEAIDCYSRSIAL  103 (428)
Q Consensus        34 ~~~~~~~a~~~~~~~y-~~g--~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~----~~~---g~~~~Ai~~y~~al~~  103 (428)
                      ..+++..+...-+.++ ..+  ++++++..+..++..+|.+..+  |..++.++    ...   +++++++.++.++++.
T Consensus        62 ~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~a--W~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~  139 (306)
T 3dra_A           62 ELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQI--WNYRQLIIGQIMELNNNDFDPYREFDILEAMLSS  139 (306)
T ss_dssp             HCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHH--HHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHH
T ss_pred             HCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHH--HHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHh
Confidence            4455555554444444 566  9999999999999999999988  88999998    666   7999999999999999


Q ss_pred             CCc-HHHHHHHHHHHHHhcCHH--HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHhhCCCc
Q 014256          104 SPT-AVAYANRAMAYLKLRRFQ--EAEDDCTEALNLDDRYIKAYSRRATARKELGK------LKESIEDSEFALRLEPQN  174 (428)
Q Consensus       104 ~p~-~~~~~nla~~~~~~~~~~--eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~------~~eA~~~~~~al~l~P~~  174 (428)
                      +|. ..+|++++.+...+|.++  +++..+++++..||.|..+|+.++.+...+|.      ++++++.+.+++.++|+|
T Consensus       140 ~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n  219 (306)
T 3dra_A          140 DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQN  219 (306)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSC
T ss_pred             CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCC
Confidence            998 999999999999999999  99999999999999999999999999999998      999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 014256          175 QEIKKQLAEVKSL  187 (428)
Q Consensus       175 ~~~~~~l~~a~~~  187 (428)
                      ..++..+.-+...
T Consensus       220 ~SaW~y~~~ll~~  232 (306)
T 3dra_A          220 PSTWNYLLGIHER  232 (306)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHh
Confidence            9998777766543

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.24  E-value=1.8e-11  Score=120.40  Aligned_cols=128  Identities=15%  Similarity=0.065  Sum_probs=98.5

Q ss_pred             Cccc-cCCCCcchHHHHHhhhhcCCCC-----chHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCC-----c--HHHHHH
Q 014256           46 PSGN-SYSRNYDPVSHISSSLMNEEST-----PDATSEKELGNECFKQKKFKEAIDCYSRSIALSP-----T--AVAYAN  112 (428)
Q Consensus        46 ~~~y-~~g~~~~Ai~~~~~al~~~p~~-----~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p-----~--~~~~~n  112 (428)
                      |..| ..|+++.|+.+|.+++...+..     ..+.++..+|.+|...|+|++|+.+|.+++.+.+     .  ..++.+
T Consensus       148 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  227 (378)
T 3q15_A          148 AEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLN  227 (378)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            3344 6788888888888888765432     2345577888888888888888888888887632     1  557888


Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 014256          113 RAMAYLKLRRFQEAEDDCTEALN-----LDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQ  173 (428)
Q Consensus       113 la~~~~~~~~~~eA~~~~~~al~-----l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~  173 (428)
                      +|.+|..+|++++|+..+.+++.     .+|..+.+++++|.++..+|++++|+..+++++.+.+.
T Consensus       228 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  293 (378)
T 3q15_A          228 IANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA  293 (378)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            88888888888888888888888     67777888888888888888888888888888887654

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.24  E-value=4.4e-12  Score=125.20  Aligned_cols=155  Identities=15%  Similarity=0.109  Sum_probs=129.8

Q ss_pred             cCCCccc-cCCCCcchHHHHHhhhhcCCCCch--HHHHHHHHHHHHHhcCHHHHHHHHHHHHcc------CCc-HHHHHH
Q 014256           43 KPSPSGN-SYSRNYDPVSHISSSLMNEESTPD--ATSEKELGNECFKQKKFKEAIDCYSRSIAL------SPT-AVAYAN  112 (428)
Q Consensus        43 ~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~--a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~------~p~-~~~~~n  112 (428)
                      ...|..+ ..|++++|+..|++++...|.+..  +..+..+|.+|+..|+|++|+.+|.+++.+      .|. ..++.+
T Consensus        52 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  131 (411)
T 4a1s_A           52 ALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN  131 (411)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence            3455555 889999999999999999988763  345889999999999999999999999987      344 788999


Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHcCC-----------------HHHHHHHHHHHHh
Q 014256          113 RAMAYLKLRRFQEAEDDCTEALNL------DDRYIKAYSRRATARKELGK-----------------LKESIEDSEFALR  169 (428)
Q Consensus       113 la~~~~~~~~~~eA~~~~~~al~l------~p~~~~a~~~lg~~~~~lg~-----------------~~eA~~~~~~al~  169 (428)
                      +|.+|..+|++++|+..|.+++.+      .+....++.++|.++..+|+                 +++|+..+.+++.
T Consensus       132 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~  211 (411)
T 4a1s_A          132 LGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK  211 (411)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence            999999999999999999999998      56778899999999999999                 9999999999988


Q ss_pred             hCCCc---H---HH----------HHHHHHHHHHHHHHHHhchh
Q 014256          170 LEPQN---Q---EI----------KKQLAEVKSLYEKEVFQKAS  197 (428)
Q Consensus       170 l~P~~---~---~~----------~~~l~~a~~~~~~a~~~~~~  197 (428)
                      +.+..   .   .+          .+++.+|...+.+++...+.
T Consensus       212 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  255 (411)
T 4a1s_A          212 LMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIARE  255 (411)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence            75311   1   11          35577788888888776643

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.23  E-value=3.7e-11  Score=114.09  Aligned_cols=122  Identities=14%  Similarity=0.085  Sum_probs=94.9

Q ss_pred             cCCCCcchHHHHHhhhhcCCCC----chHHHHHHHHHHHHHhcCHHHHHHHHHHHHc---cCCc-----HHHHHHHHHHH
Q 014256           50 SYSRNYDPVSHISSSLMNEEST----PDATSEKELGNECFKQKKFKEAIDCYSRSIA---LSPT-----AVAYANRAMAY  117 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~~----~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~---~~p~-----~~~~~nla~~~  117 (428)
                      ..|++++|+.+|.+++...+..    ..+..+..+|.+|...|+|++|+.+|.+++.   ..|+     ..+++|+|.+|
T Consensus       127 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y  206 (293)
T 2qfc_A          127 KKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKAL  206 (293)
T ss_dssp             TSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHH
Confidence            6678888888888888764332    2244578888888888999999999888884   3343     25788888889


Q ss_pred             HHhcCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCCHHHH-HHHHHHHHhhC
Q 014256          118 LKLRRFQEAEDDCTEALNLDDR------YIKAYSRRATARKELGKLKES-IEDSEFALRLE  171 (428)
Q Consensus       118 ~~~~~~~eA~~~~~~al~l~p~------~~~a~~~lg~~~~~lg~~~eA-~~~~~~al~l~  171 (428)
                      ..+|+|++|+..+.+++.+.+.      ...+++++|.++..+|++++| ..+|++++.+.
T Consensus       207 ~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~  267 (293)
T 2qfc_A          207 YLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence            8899999999888888877543      267888888888889988888 77788888664

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.21  E-value=1.2e-11  Score=121.09  Aligned_cols=155  Identities=16%  Similarity=0.157  Sum_probs=125.5

Q ss_pred             cCCCccc-cCCCCcchHHHHHhhhhcCCCCch--HHHHHHHHHHHHHhcCHHHHHHHHHHHHccC------Cc-HHHHHH
Q 014256           43 KPSPSGN-SYSRNYDPVSHISSSLMNEESTPD--ATSEKELGNECFKQKKFKEAIDCYSRSIALS------PT-AVAYAN  112 (428)
Q Consensus        43 ~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~--a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~------p~-~~~~~n  112 (428)
                      ...|..+ ..|++++|+.+|++++...|.+..  +..+..+|.+++..|+|++|+.+|.+++.+.      |. ..++.+
T Consensus        13 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~   92 (406)
T 3sf4_A           13 ALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN   92 (406)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence            3445555 889999999999999999887753  4558899999999999999999999998873      23 678999


Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCC--------------------HHHHHHHHHH
Q 014256          113 RAMAYLKLRRFQEAEDDCTEALNLDDRY------IKAYSRRATARKELGK--------------------LKESIEDSEF  166 (428)
Q Consensus       113 la~~~~~~~~~~eA~~~~~~al~l~p~~------~~a~~~lg~~~~~lg~--------------------~~eA~~~~~~  166 (428)
                      +|.+|..+|++++|+..+.+++.+.+..      ..++..+|.++...|+                    +++|+..+.+
T Consensus        93 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~  172 (406)
T 3sf4_A           93 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEE  172 (406)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence            9999999999999999999999887643      5589999999999999                    9999999999


Q ss_pred             HHhhCC------CcHHH----------HHHHHHHHHHHHHHHHhchh
Q 014256          167 ALRLEP------QNQEI----------KKQLAEVKSLYEKEVFQKAS  197 (428)
Q Consensus       167 al~l~P------~~~~~----------~~~l~~a~~~~~~a~~~~~~  197 (428)
                      ++.+.+      ....+          .+++.+|...+.+++...+.
T Consensus       173 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  219 (406)
T 3sf4_A          173 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE  219 (406)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh
Confidence            988732      11111          45677788888887776543

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.21  E-value=3.5e-11  Score=106.45  Aligned_cols=144  Identities=15%  Similarity=0.035  Sum_probs=103.4

Q ss_pred             cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHcc------CCc-HHHHHHHHHHHHHhcC
Q 014256           50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIAL------SPT-AVAYANRAMAYLKLRR  122 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~------~p~-~~~~~nla~~~~~~~~  122 (428)
                      ..|++++|...++.+.. +|. ..+..+..+|.++...|+|++|+.+|.+++.+      .+. ..++.++|.+|..+|+
T Consensus         4 ~~g~~~~A~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~   81 (203)
T 3gw4_A            4 EAHDYALAERQAQALLA-HPA-TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN   81 (203)
T ss_dssp             ---CHHHHHHHHHHHHT-STT-THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             ccccHHHHHHHHHHhcC-ChH-HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence            56788888884444433 332 23555788999999999999999999998884      222 6678889999999999


Q ss_pred             HHHHHHHHHHHHhc---CC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CcHHH--------------HH
Q 014256          123 FQEAEDDCTEALNL---DD----RYIKAYSRRATARKELGKLKESIEDSEFALRLEP--QNQEI--------------KK  179 (428)
Q Consensus       123 ~~eA~~~~~~al~l---~p----~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P--~~~~~--------------~~  179 (428)
                      +++|+..+.+++.+   .+    ....+++++|.++..+|++++|+..+++++.+.+  .+...              .+
T Consensus        82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g  161 (203)
T 3gw4_A           82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK  161 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence            99999999998887   33    2356788899999999999999999999887642  22211              24


Q ss_pred             HHHHHHHHHHHHHHhc
Q 014256          180 QLAEVKSLYEKEVFQK  195 (428)
Q Consensus       180 ~l~~a~~~~~~a~~~~  195 (428)
                      ++.+|...+.+++.+.
T Consensus       162 ~~~~A~~~~~~al~~~  177 (203)
T 3gw4_A          162 NLLEAQQHWLRARDIF  177 (203)
T ss_dssp             CHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHH
Confidence            5666777777666544

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.21  E-value=1.4e-10  Score=110.12  Aligned_cols=147  Identities=14%  Similarity=0.059  Sum_probs=117.6

Q ss_pred             ccCCCCcchHHHHHhhhhcCCCCch----HHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-------HHHHHHHHHHH
Q 014256           49 NSYSRNYDPVSHISSSLMNEESTPD----ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-------AVAYANRAMAY  117 (428)
Q Consensus        49 y~~g~~~~Ai~~~~~al~~~p~~~~----a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-------~~~~~nla~~~  117 (428)
                      +..|++++|+..|.+++...+....    ...++.+|..+...|+|++|+.+|.+++...+.       ..+++++|.+|
T Consensus        86 ~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y  165 (293)
T 2qfc_A           86 CKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIY  165 (293)
T ss_dssp             HHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHH
T ss_pred             HHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence            3889999999999999998776432    233567899999999999999999999976432       55899999999


Q ss_pred             HHhcCHHHHHHHHHHHH---hcCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc------HHH-------
Q 014256          118 LKLRRFQEAEDDCTEAL---NLDDRYI----KAYSRRATARKELGKLKESIEDSEFALRLEPQN------QEI-------  177 (428)
Q Consensus       118 ~~~~~~~eA~~~~~~al---~l~p~~~----~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~------~~~-------  177 (428)
                      ..+|+|++|+..|.+++   ...|++.    .+++++|.+|..+|+|++|+..+++++.+.+..      ..+       
T Consensus       166 ~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~  245 (293)
T 2qfc_A          166 AENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGEC  245 (293)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence            99999999999999999   4455542    689999999999999999999999999886431      222       


Q ss_pred             ---HHHHHHH-HHHHHHHHHhc
Q 014256          178 ---KKQLAEV-KSLYEKEVFQK  195 (428)
Q Consensus       178 ---~~~l~~a-~~~~~~a~~~~  195 (428)
                         .+++++| ..+|++++.+.
T Consensus       246 y~~~g~~~~Ai~~~~~~Al~~~  267 (293)
T 2qfc_A          246 LRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHcCCcHHHHHHHHHHHHHHH
Confidence               2335566 55677766544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.21  E-value=3.1e-11  Score=126.00  Aligned_cols=129  Identities=9%  Similarity=-0.003  Sum_probs=121.1

Q ss_pred             CcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhc--CHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhc-CHHHHHHH
Q 014256           54 NYDPVSHISSSLMNEESTPDATSEKELGNECFKQK--KFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLR-RFQEAEDD  129 (428)
Q Consensus        54 ~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g--~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~-~~~eA~~~  129 (428)
                      +++++..+++++..+|++..+  |..+|.++.+.|  +|++|++++.++++.+|. ..+|.+++.+...+| .+++++++
T Consensus        89 ~~~eL~~~~~~l~~~pK~y~a--W~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~  166 (567)
T 1dce_A           89 VKAELGFLESCLRVNPKSYGT--WHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAF  166 (567)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHH--HHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHH
Confidence            899999999999999999888  889999999999  779999999999999998 999999999999999 99999999


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 014256          130 CTEALNLDDRYIKAYSRRATARKEL--------------GKLKESIEDSEFALRLEPQNQEIKKQLAEV  184 (428)
Q Consensus       130 ~~~al~l~p~~~~a~~~lg~~~~~l--------------g~~~eA~~~~~~al~l~P~~~~~~~~l~~a  184 (428)
                      ++++++.+|.+..+|+.+|.++..+              +.+++|++++.+++.++|++..++..+.-+
T Consensus       167 ~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~l  235 (567)
T 1dce_A          167 TDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWL  235 (567)
T ss_dssp             HHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHH
T ss_pred             HHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHH
Confidence            9999999999999999999999986              668999999999999999999888665544

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.21  E-value=4.1e-11  Score=113.25  Aligned_cols=128  Identities=15%  Similarity=0.088  Sum_probs=112.9

Q ss_pred             ccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccC-Cc--HHHHHHHHHHHHHhcC
Q 014256           47 SGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALS-PT--AVAYANRAMAYLKLRR  122 (428)
Q Consensus        47 ~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~-p~--~~~~~nla~~~~~~~~  122 (428)
                      ..+ ..|+|++|.+.|..++...|... +  .+.+|.++++.|+|++|+.+|++++... |.  ..+++++|.++..+|+
T Consensus       110 ~~L~~~g~y~eA~~~l~~~~~~~p~~~-~--~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~  186 (282)
T 4f3v_A          110 ACEAAQGNYADAMEALEAAPVAGSEHL-V--AWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLAL  186 (282)
T ss_dssp             HHHHHHTCHHHHHHHHTSSCCTTCHHH-H--HHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHCCCHHHHHHHHHHHHhcCCchH-H--HHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCC
Confidence            335 78999999999999999888665 4  7899999999999999999999887764 32  4589999999999999


Q ss_pred             HHHHHHHHHHHHhcC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHH
Q 014256          123 FQEAEDDCTEALNLD--DR-YIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK  178 (428)
Q Consensus       123 ~~eA~~~~~~al~l~--p~-~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~  178 (428)
                      +++|+..|.+++.-.  |. .+.+++++|.++..+|+.++|...|++++..+|+ ..+.
T Consensus       187 ~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~  244 (282)
T 4f3v_A          187 FTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVA  244 (282)
T ss_dssp             HHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHH
T ss_pred             HHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHH
Confidence            999999999998654  65 6779999999999999999999999999999998 6543

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.20  E-value=2.9e-11  Score=101.93  Aligned_cols=133  Identities=17%  Similarity=0.169  Sum_probs=106.1

Q ss_pred             hhcCCCccc-cCCCCcchHHHHHhhhhcCCCCc----hHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-------HH
Q 014256           41 AKKPSPSGN-SYSRNYDPVSHISSSLMNEESTP----DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-------AV  108 (428)
Q Consensus        41 a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~----~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-------~~  108 (428)
                      ++..+|..| ..|++++|+.+|.+++...+...    .+..+..+|.++...|++++|+.+|.+++.+.+.       ..
T Consensus        11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~   90 (164)
T 3ro3_A           11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ   90 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence            344555566 78899999999999988754321    2345788999999999999999999999886432       55


Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 014256          109 AYANRAMAYLKLRRFQEAEDDCTEALNLDD------RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQ  173 (428)
Q Consensus       109 ~~~nla~~~~~~~~~~eA~~~~~~al~l~p------~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~  173 (428)
                      ++.++|.++..+|++++|+..+.+++.+.+      ....++..+|.++..+|++++|+..+++++.+...
T Consensus        91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  161 (164)
T 3ro3_A           91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  161 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            788999999999999999999999987743      22567888999999999999999999999887543

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.20  E-value=1.3e-10  Score=94.04  Aligned_cols=100  Identities=12%  Similarity=0.110  Sum_probs=87.4

Q ss_pred             cchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 014256           55 YDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEA  133 (428)
Q Consensus        55 ~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~a  133 (428)
                      .+|+..|.+++..+|.+..+  +..+|.+++..|+|++|+.+|.+++.++|. ..+|+++|.+|..+|++++|+..|.++
T Consensus         2 ~~a~~~~~~al~~~p~~~~~--~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a   79 (115)
T 2kat_A            2 QAITERLEAMLAQGTDNMLL--RFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESG   79 (115)
T ss_dssp             CCHHHHHHHHHTTTCCCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCcHHH--HHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            57899999999999988766  889999999999999999999999999998 889999999999999999999999999


Q ss_pred             HhcCCC--CHHHHHHHHHHHHHcCC
Q 014256          134 LNLDDR--YIKAYSRRATARKELGK  156 (428)
Q Consensus       134 l~l~p~--~~~a~~~lg~~~~~lg~  156 (428)
                      +.++|.  +..+...+...+..+|+
T Consensus        80 l~~~~~~~~~~~~~~l~~~l~~l~~  104 (115)
T 2kat_A           80 LAAAQSRGDQQVVKELQVFLRRLAR  104 (115)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHhccccccHHHHHHHHHHHHHhcc
Confidence            999884  44555555555554443

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.20  E-value=1.1e-10  Score=120.31  Aligned_cols=158  Identities=8%  Similarity=-0.028  Sum_probs=133.5

Q ss_pred             ChhhhhcCCCccc-c-------CCCCc-------chHHHHHhhhh-cCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 014256           37 SLKSAKKPSPSGN-S-------YSRNY-------DPVSHISSSLM-NEESTPDATSEKELGNECFKQKKFKEAIDCYSRS  100 (428)
Q Consensus        37 ~~~~a~~~~~~~y-~-------~g~~~-------~Ai~~~~~al~-~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~a  100 (428)
                      +...+...++..+ .       .|+++       +|+..|++++. ..|++...  |..+|..+...|++++|..+|+++
T Consensus       270 ~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l--~~~~~~~~~~~g~~~~A~~~~~~a  347 (530)
T 2ooe_A          270 HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLL--YFAYADYEESRMKYEKVHSIYNRL  347 (530)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHH--HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHH--HHHHHHHHHhcCCHHHHHHHHHHH
Confidence            3344444455555 2       68887       89999999997 78887666  889999999999999999999999


Q ss_pred             HccCCc-H-HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhhCCCcHHH
Q 014256          101 IALSPT-A-VAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATA-RKELGKLKESIEDSEFALRLEPQNQEI  177 (428)
Q Consensus       101 l~~~p~-~-~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~-~~~lg~~~eA~~~~~~al~l~P~~~~~  177 (428)
                      +++.|. + .+|.++|.++...|++++|...|.+|+...|.....+...+.+ +...|++++|...|+++++..|+++.+
T Consensus       348 l~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~  427 (530)
T 2ooe_A          348 LAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEY  427 (530)
T ss_dssp             HHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             hCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHH
Confidence            999997 4 5899999999999999999999999999999888887777665 446999999999999999999999877


Q ss_pred             H----------HHHHHHHHHHHHHHHhch
Q 014256          178 K----------KQLAEVKSLYEKEVFQKA  196 (428)
Q Consensus       178 ~----------~~l~~a~~~~~~a~~~~~  196 (428)
                      +          ++..+|...|++++...|
T Consensus       428 ~~~~~~~~~~~g~~~~Ar~~~~~al~~~~  456 (530)
T 2ooe_A          428 VLAYIDYLSHLNEDNNTRVLFERVLTSGS  456 (530)
T ss_dssp             HHHHHHHHTTTTCHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHhCCCHhhHHHHHHHHHhccC
Confidence            4          456678888888887654

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.19  E-value=3.4e-11  Score=109.13  Aligned_cols=152  Identities=9%  Similarity=-0.059  Sum_probs=121.1

Q ss_pred             ChhhhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhc----CHHHHHHHHHHHHccCCcHHHHH
Q 014256           37 SLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQK----KFKEAIDCYSRSIALSPTAVAYA  111 (428)
Q Consensus        37 ~~~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g----~~~~Ai~~y~~al~~~p~~~~~~  111 (428)
                      +...+...+|..| ..+++++|+.+|+++....  +..+  ++.+|.+|.. +    ++++|+.+|+++++.. ++.+++
T Consensus        16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g--~~~a--~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g-~~~a~~   89 (212)
T 3rjv_A           16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG--DGDA--LALLAQLKIR-NPQQADYPQARQLAEKAVEAG-SKSGEI   89 (212)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--CHHH--HHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT-CHHHHH
T ss_pred             CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC--CHHH--HHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC-CHHHHH
Confidence            3445566666666 7789999999999998764  4445  7799999988 7    8999999999996542 288899


Q ss_pred             HHHHHHHH----hcCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCcHHHH---
Q 014256          112 NRAMAYLK----LRRFQEAEDDCTEALNLDD--RYIKAYSRRATARKE----LGKLKESIEDSEFALRLEPQNQEIK---  178 (428)
Q Consensus       112 nla~~~~~----~~~~~eA~~~~~~al~l~p--~~~~a~~~lg~~~~~----lg~~~eA~~~~~~al~l~P~~~~~~---  178 (428)
                      ++|.+|..    .+++++|+.+|.+++...+  .++.+++++|.+|..    .+++++|+.+|++++.+ |.++.+.   
T Consensus        90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~L  168 (212)
T 3rjv_A           90 VLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWA  168 (212)
T ss_dssp             HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHH
T ss_pred             HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHH
Confidence            99999988    8899999999999999988  458999999999998    88999999999999988 4444441   


Q ss_pred             --------H-----HHHHHHHHHHHHHHhc
Q 014256          179 --------K-----QLAEVKSLYEKEVFQK  195 (428)
Q Consensus       179 --------~-----~l~~a~~~~~~a~~~~  195 (428)
                              +     ++.+|..+|+++....
T Consensus       169 g~~y~~g~gg~~~~d~~~A~~~~~~A~~~g  198 (212)
T 3rjv_A          169 GMMFQQGEKGFIEPNKQKALHWLNVSCLEG  198 (212)
T ss_dssp             HHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence                    1     4567777777777654

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.19  E-value=3.5e-12  Score=125.91  Aligned_cols=158  Identities=13%  Similarity=0.098  Sum_probs=128.7

Q ss_pred             hhcCCCccc-cCCC-----------------CcchHHHHHhhhhcCCC----CchHHHHHHHHHHHHHhcCHHHHHHHHH
Q 014256           41 AKKPSPSGN-SYSR-----------------NYDPVSHISSSLMNEES----TPDATSEKELGNECFKQKKFKEAIDCYS   98 (428)
Q Consensus        41 a~~~~~~~y-~~g~-----------------~~~Ai~~~~~al~~~p~----~~~a~~~~~lg~~~~~~g~~~~Ai~~y~   98 (428)
                      ++..++..| ..|+                 +++|+.+|.+++...+.    ...+..+..+|.+++..|+|++|+.+|.
T Consensus       168 ~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  247 (411)
T 4a1s_A          168 ALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQ  247 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            444555566 7788                 99999999998876421    2234458899999999999999999999


Q ss_pred             HHHccCCc-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHH
Q 014256           99 RSIALSPT-------AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY------IKAYSRRATARKELGKLKESIEDSE  165 (428)
Q Consensus        99 ~al~~~p~-------~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~------~~a~~~lg~~~~~lg~~~eA~~~~~  165 (428)
                      +++.+.+.       ..++.++|.+|..+|++++|+..+++++.+.+..      ..++..+|.++..+|++++|+..|+
T Consensus       248 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  327 (411)
T 4a1s_A          248 ERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHN  327 (411)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            99998653       3489999999999999999999999999988754      7789999999999999999999999


Q ss_pred             HHHhhCCCcH------HH----------HHHHHHHHHHHHHHHHhchhh
Q 014256          166 FALRLEPQNQ------EI----------KKQLAEVKSLYEKEVFQKASK  198 (428)
Q Consensus       166 ~al~l~P~~~------~~----------~~~l~~a~~~~~~a~~~~~~~  198 (428)
                      +++.+.+...      .+          .+++.+|..+|++++.+....
T Consensus       328 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  376 (411)
T 4a1s_A          328 RHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXX  376 (411)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHH
T ss_pred             HHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhc
Confidence            9998865431      11          356778888888888776443

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.19  E-value=8e-12  Score=122.35  Aligned_cols=153  Identities=18%  Similarity=0.155  Sum_probs=104.0

Q ss_pred             cCCCccc-cCCCCcchHHHHHhhhhcCCCCc----hHHHHHHHHHHHHHhcC--------------------HHHHHHHH
Q 014256           43 KPSPSGN-SYSRNYDPVSHISSSLMNEESTP----DATSEKELGNECFKQKK--------------------FKEAIDCY   97 (428)
Q Consensus        43 ~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~----~a~~~~~lg~~~~~~g~--------------------~~~Ai~~y   97 (428)
                      ..+|..| ..|++++|+.+|.+++...+...    .+..+..+|.++...|+                    |++|+.+|
T Consensus        91 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~  170 (406)
T 3sf4_A           91 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFY  170 (406)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence            3444445 67788888888887777654322    23346777888888888                    88888888


Q ss_pred             HHHHccC------Cc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHcCCHHHHHHHH
Q 014256           98 SRSIALS------PT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYI------KAYSRRATARKELGKLKESIEDS  164 (428)
Q Consensus        98 ~~al~~~------p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~------~a~~~lg~~~~~lg~~~eA~~~~  164 (428)
                      .+++.+.      +. ..++.++|.+|..+|++++|+..+.+++.+.+...      .++.++|.++..+|++++|+..|
T Consensus       171 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  250 (406)
T 3sf4_A          171 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY  250 (406)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence            7777652      22 55677788888888888888888888877755432      37777888888888888888888


Q ss_pred             HHHHhhCCCc------HHH----------HHHHHHHHHHHHHHHHhc
Q 014256          165 EFALRLEPQN------QEI----------KKQLAEVKSLYEKEVFQK  195 (428)
Q Consensus       165 ~~al~l~P~~------~~~----------~~~l~~a~~~~~~a~~~~  195 (428)
                      ++++.+.|..      ..+          .+++.+|...+.+++...
T Consensus       251 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  297 (406)
T 3sf4_A          251 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA  297 (406)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence            8887766543      111          245566666776666554

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.19  E-value=2.5e-11  Score=114.81  Aligned_cols=151  Identities=17%  Similarity=0.166  Sum_probs=123.2

Q ss_pred             Cccc-cCCCCcchHHHHHhhhhcCCCCch--HHHHHHHHHHHHHhcCHHHHHHHHHHHHccC------Cc-HHHHHHHHH
Q 014256           46 PSGN-SYSRNYDPVSHISSSLMNEESTPD--ATSEKELGNECFKQKKFKEAIDCYSRSIALS------PT-AVAYANRAM  115 (428)
Q Consensus        46 ~~~y-~~g~~~~Ai~~~~~al~~~p~~~~--a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~------p~-~~~~~nla~  115 (428)
                      |..+ ..|++++|+..|++++...|.+..  +..+..+|.+++..|++++|+.+|.+++.+.      +. ..++.++|.
T Consensus        12 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~   91 (338)
T 3ro2_A           12 GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGN   91 (338)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence            4444 789999999999999999988753  4558899999999999999999999998872      23 678999999


Q ss_pred             HHHHhcCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHh
Q 014256          116 AYLKLRRFQEAEDDCTEALNLDDRY------IKAYSRRATARKELGK--------------------LKESIEDSEFALR  169 (428)
Q Consensus       116 ~~~~~~~~~eA~~~~~~al~l~p~~------~~a~~~lg~~~~~lg~--------------------~~eA~~~~~~al~  169 (428)
                      +|..+|++++|+..+.+++.+.+..      ..++..+|.++..+|+                    +++|+..+++++.
T Consensus        92 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~  171 (338)
T 3ro2_A           92 TLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLS  171 (338)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999886643      4589999999999999                    9999999999987


Q ss_pred             hCCC---c---HHH----------HHHHHHHHHHHHHHHHhch
Q 014256          170 LEPQ---N---QEI----------KKQLAEVKSLYEKEVFQKA  196 (428)
Q Consensus       170 l~P~---~---~~~----------~~~l~~a~~~~~~a~~~~~  196 (428)
                      +.+.   .   ..+          .+++.+|...+.+++...+
T Consensus       172 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~  214 (338)
T 3ro2_A          172 LVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK  214 (338)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            6321   1   111          3556777777777776553

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.18  E-value=2.7e-11  Score=98.72  Aligned_cols=111  Identities=14%  Similarity=0.146  Sum_probs=97.3

Q ss_pred             cCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc--------HHHHHHH
Q 014256           43 KPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT--------AVAYANR  113 (428)
Q Consensus        43 ~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~--------~~~~~nl  113 (428)
                      ..+|..+ ..|++++|+.+|.+++..+|.+..+  +..+|.++...|+|++|+.+|.+++...|.        ..+++++
T Consensus         8 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~--~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l   85 (131)
T 1elr_A            8 KELGNDAYKKKDFDTALKHYDKAKELDPTNMTY--ITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI   85 (131)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHH--HHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence            3445555 7899999999999999999987666  789999999999999999999999998764        5689999


Q ss_pred             HHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 014256          114 AMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGK  156 (428)
Q Consensus       114 a~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~  156 (428)
                      |.+|..+|++++|+..|.+++.++| +...+..++.+...+++
T Consensus        86 a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~  127 (131)
T 1elr_A           86 GNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKE  127 (131)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999 68888888887766543

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.16  E-value=3.5e-10  Score=86.59  Aligned_cols=82  Identities=33%  Similarity=0.486  Sum_probs=69.1

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 014256           74 ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARK  152 (428)
Q Consensus        74 a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~  152 (428)
                      +..+..+|.+++..|+|++|+.+|.+++..+|. ..+++++|.++..+|++++|+..|.+++.++|.++.++.++|.++.
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~   88 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ   88 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            344778888888888888888888888888887 7788888888888888888888888888888888888888888887


Q ss_pred             HcC
Q 014256          153 ELG  155 (428)
Q Consensus       153 ~lg  155 (428)
                      .+|
T Consensus        89 ~~g   91 (91)
T 1na3_A           89 KQG   91 (91)
T ss_dssp             HHC
T ss_pred             hcC
Confidence            654

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.14  E-value=1.6e-10  Score=90.57  Aligned_cols=87  Identities=16%  Similarity=0.318  Sum_probs=59.3

Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHH--HHHHHHHHH
Q 014256          111 ANRAMAYLKLRRFQEAEDDCTEALNLDDRYIK-AYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK--KQLAEVKSL  187 (428)
Q Consensus       111 ~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~-a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~--~~l~~a~~~  187 (428)
                      +++|.+++..|+|++|+..|++++..+|+++. +++++|.++..+|++++|+..|++++.++|++..+.  ..+.++...
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~   83 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQARKMVMDILNF   83 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence            45666677777777777777777777777766 777777777777777777777777777777766665  666666666


Q ss_pred             HHHHHHhchh
Q 014256          188 YEKEVFQKAS  197 (428)
Q Consensus       188 ~~~a~~~~~~  197 (428)
                      |++.+..+|.
T Consensus        84 ~~~~~~~~p~   93 (99)
T 2kc7_A           84 YNKDMYNQLE   93 (99)
T ss_dssp             HCCTTHHHHC
T ss_pred             HHHHhccCcc
Confidence            6665555543

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.14  E-value=7.8e-11  Score=104.20  Aligned_cols=134  Identities=12%  Similarity=0.064  Sum_probs=111.5

Q ss_pred             hhhhcCCCccc-cCCCCcchHHHHHhhhhcCCC----CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHcc------CC-c
Q 014256           39 KSAKKPSPSGN-SYSRNYDPVSHISSSLMNEES----TPDATSEKELGNECFKQKKFKEAIDCYSRSIAL------SP-T  106 (428)
Q Consensus        39 ~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~----~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~------~p-~  106 (428)
                      ..++..+|..| ..|++++|+.+|.+++.....    ...+..+..+|.++...|++++|+.+|.+++.+      ++ .
T Consensus        26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  105 (203)
T 3gw4_A           26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLA  105 (203)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHH
Confidence            34556677777 899999999999999984221    123455889999999999999999999999998      33 2


Q ss_pred             -HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC--C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 014256          107 -AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDR--Y----IKAYSRRATARKELGKLKESIEDSEFALRLEP  172 (428)
Q Consensus       107 -~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~--~----~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P  172 (428)
                       ..++.++|.++..+|++++|+..+.+++.+.+.  +    ..++.++|.++..+|++++|...+++++.+..
T Consensus       106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  178 (203)
T 3gw4_A          106 ASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA  178 (203)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence             567999999999999999999999999976432  2    34578999999999999999999999998754

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.13  E-value=1.2e-10  Score=92.19  Aligned_cols=102  Identities=14%  Similarity=0.103  Sum_probs=91.5

Q ss_pred             ChhhhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc---HHHHHH
Q 014256           37 SLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT---AVAYAN  112 (428)
Q Consensus        37 ~~~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~---~~~~~n  112 (428)
                      +...++..+|..+ ..|++++|+..|.+++..+|....+  +..+|.+++..|+|++|+.+|++++..+|.   ..++.+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~--~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~   81 (112)
T 2kck_A            4 QNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKY--WLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA   81 (112)
T ss_dssp             SSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred             CcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHH--HHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence            3344555666666 8899999999999999999987766  789999999999999999999999999986   788999


Q ss_pred             HHHHHHHh-cCHHHHHHHHHHHHhcCCCC
Q 014256          113 RAMAYLKL-RRFQEAEDDCTEALNLDDRY  140 (428)
Q Consensus       113 la~~~~~~-~~~~eA~~~~~~al~l~p~~  140 (428)
                      +|.++..+ |++++|+..+.+++..+|..
T Consensus        82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           82 KADALRYIEGKEVEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             HHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence            99999999 99999999999999999875

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.12  E-value=8.7e-11  Score=92.16  Aligned_cols=89  Identities=17%  Similarity=0.163  Sum_probs=81.3

Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHccCCc-HH-HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 014256           78 KELGNECFKQKKFKEAIDCYSRSIALSPT-AV-AYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG  155 (428)
Q Consensus        78 ~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~-~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg  155 (428)
                      +.+|..++..|+|++|+.+|++++..+|+ .. +|+++|.+|..+|++++|+..|.+++.++|++..++++        +
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~   75 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K   75 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence            47899999999999999999999999998 88 99999999999999999999999999999999988755        6


Q ss_pred             CHHHHHHHHHHHHhhCCCc
Q 014256          156 KLKESIEDSEFALRLEPQN  174 (428)
Q Consensus       156 ~~~eA~~~~~~al~l~P~~  174 (428)
                      .+.+++..|++++.++|++
T Consensus        76 ~~~~a~~~~~~~~~~~p~~   94 (99)
T 2kc7_A           76 MVMDILNFYNKDMYNQLEH   94 (99)
T ss_dssp             HHHHHHHHHCCTTHHHHCC
T ss_pred             HHHHHHHHHHHHhccCccc
Confidence            6778888888888887765

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.11  E-value=2.9e-11  Score=114.35  Aligned_cols=128  Identities=20%  Similarity=0.206  Sum_probs=74.6

Q ss_pred             CCccc-cCCCCcchHHHHHhhhhcCCCCc----hHHHHHHHHHHHHHhcC--------------------HHHHHHHHHH
Q 014256           45 SPSGN-SYSRNYDPVSHISSSLMNEESTP----DATSEKELGNECFKQKK--------------------FKEAIDCYSR   99 (428)
Q Consensus        45 ~~~~y-~~g~~~~Ai~~~~~al~~~p~~~----~a~~~~~lg~~~~~~g~--------------------~~~Ai~~y~~   99 (428)
                      ++..| ..|++++|+..|.+++...+...    .+..+..+|.++...|+                    +++|+.+|.+
T Consensus        89 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~  168 (338)
T 3ro2_A           89 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEE  168 (338)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence            33444 56666666666666665543221    12335566666666666                    6666666666


Q ss_pred             HHccC------Cc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 014256          100 SIALS------PT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY------IKAYSRRATARKELGKLKESIEDSEF  166 (428)
Q Consensus       100 al~~~------p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~------~~a~~~lg~~~~~lg~~~eA~~~~~~  166 (428)
                      ++.+.      +. ..++.++|.++..+|++++|+..+.+++.+.+..      ..++..+|.++...|++++|+..+++
T Consensus       169 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  248 (338)
T 3ro2_A          169 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK  248 (338)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            65542      11 4456666666666666666666666666554332      22566666666666666666666666


Q ss_pred             HHhhCC
Q 014256          167 ALRLEP  172 (428)
Q Consensus       167 al~l~P  172 (428)
                      ++.+.+
T Consensus       249 al~~~~  254 (338)
T 3ro2_A          249 TLLLAR  254 (338)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            665544

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.11  E-value=4.1e-10  Score=115.97  Aligned_cols=143  Identities=13%  Similarity=0.067  Sum_probs=127.0

Q ss_pred             chHHHHHhhhhcCCCCchHHHHHHHHHHHHH-------hcCHH-------HHHHHHHHHHc-cCCc-HHHHHHHHHHHHH
Q 014256           56 DPVSHISSSLMNEESTPDATSEKELGNECFK-------QKKFK-------EAIDCYSRSIA-LSPT-AVAYANRAMAYLK  119 (428)
Q Consensus        56 ~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~-------~g~~~-------~Ai~~y~~al~-~~p~-~~~~~nla~~~~~  119 (428)
                      .++..|++++..+|.+..+  |..+|..+..       .|+++       +|+.+|++++. +.|+ ..+|.++|..+..
T Consensus       256 ~a~~~y~~al~~~p~~~~~--w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~  333 (530)
T 2ooe_A          256 RVMFAYEQCLLVLGHHPDI--WYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES  333 (530)
T ss_dssp             HHHHHHHHHHHHHTTCHHH--HHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCHHH--HHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence            6778999999999998777  8899999986       79987       99999999997 7898 9999999999999


Q ss_pred             hcCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH-----------HHHHHHHHHH
Q 014256          120 LRRFQEAEDDCTEALNLDDRYI-KAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI-----------KKQLAEVKSL  187 (428)
Q Consensus       120 ~~~~~eA~~~~~~al~l~p~~~-~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~-----------~~~l~~a~~~  187 (428)
                      .|++++|...|++++.++|.++ .+|..+|.++...|++++|...|.++++..|.....           .++..+|...
T Consensus       334 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~  413 (530)
T 2ooe_A          334 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKI  413 (530)
T ss_dssp             TTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHH
Confidence            9999999999999999999986 699999999999999999999999999998875432           2345788999


Q ss_pred             HHHHHHhchhhhH
Q 014256          188 YEKEVFQKASKTL  200 (428)
Q Consensus       188 ~~~a~~~~~~~~~  200 (428)
                      |++++...|.++.
T Consensus       414 ~e~al~~~p~~~~  426 (530)
T 2ooe_A          414 FELGLKKYGDIPE  426 (530)
T ss_dssp             HHHHHHHHTTCHH
T ss_pred             HHHHHHHCCCCHH
Confidence            9999998876654

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.11  E-value=4.1e-10  Score=109.65  Aligned_cols=149  Identities=15%  Similarity=0.035  Sum_probs=130.5

Q ss_pred             ccChhhhhcCCCccc-cCC-CCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHh-c-CHHHHHHHHHHHHccCCc-HHH
Q 014256           35 SSSLKSAKKPSPSGN-SYS-RNYDPVSHISSSLMNEESTPDATSEKELGNECFKQ-K-KFKEAIDCYSRSIALSPT-AVA  109 (428)
Q Consensus        35 ~~~~~~a~~~~~~~y-~~g-~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~-g-~~~~Ai~~y~~al~~~p~-~~~  109 (428)
                      .+++-.+...-+.++ ..| .+++++..+..++..+|.+..+  |..++.++... + ++++++.++.++++.+|. ..+
T Consensus        84 nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~a--W~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~A  161 (349)
T 3q7a_A           84 NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQV--WHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHT  161 (349)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHH--HHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHH
T ss_pred             CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHH
Confidence            344444443334444 556 5899999999999999999888  88999999998 8 999999999999999998 999


Q ss_pred             HHHHHHHHHHhcCHH--------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHhhCCCc
Q 014256          110 YANRAMAYLKLRRFQ--------EAEDDCTEALNLDDRYIKAYSRRATARKELGK-------LKESIEDSEFALRLEPQN  174 (428)
Q Consensus       110 ~~nla~~~~~~~~~~--------eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~-------~~eA~~~~~~al~l~P~~  174 (428)
                      |..|+.+...++.++        ++++.+++++..+|.|..||+.++.++..+|.       ++++++.+.+++.++|+|
T Consensus       162 W~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n  241 (349)
T 3q7a_A          162 WAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHN  241 (349)
T ss_dssp             HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCC
Confidence            999999999999888        99999999999999999999999999999997       799999999999999999


Q ss_pred             HHHHHHHHHHH
Q 014256          175 QEIKKQLAEVK  185 (428)
Q Consensus       175 ~~~~~~l~~a~  185 (428)
                      ..++..+.-..
T Consensus       242 ~SaW~Ylr~Ll  252 (349)
T 3q7a_A          242 VSAWNYLRGFL  252 (349)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99987665543

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.08  E-value=6e-10  Score=105.27  Aligned_cols=119  Identities=13%  Similarity=0.041  Sum_probs=101.3

Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHccCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCC-HHHHHHHHHHHHHcCC
Q 014256           79 ELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLD-DRY-IKAYSRRATARKELGK  156 (428)
Q Consensus        79 ~lg~~~~~~g~~~~Ai~~y~~al~~~p~~~~~~nla~~~~~~~~~~eA~~~~~~al~l~-p~~-~~a~~~lg~~~~~lg~  156 (428)
                      .++..+...|+|++|.+.|..++...|....++.+|.++++.++|++|+..|+.++... |.. ..+++.+|.++..+|+
T Consensus       107 ayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~  186 (282)
T 4f3v_A          107 GFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLAL  186 (282)
T ss_dssp             HHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCC
Confidence            46788999999999999999999988983399999999999999999999999887764 222 3589999999999999


Q ss_pred             HHHHHHHHHHHHhhC--CC-cHHH----------HHHHHHHHHHHHHHHHhchh
Q 014256          157 LKESIEDSEFALRLE--PQ-NQEI----------KKQLAEVKSLYEKEVFQKAS  197 (428)
Q Consensus       157 ~~eA~~~~~~al~l~--P~-~~~~----------~~~l~~a~~~~~~a~~~~~~  197 (428)
                      +++|+..|++++.-.  |. ..++          .++.++|...|++++..+|.
T Consensus       187 ~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~  240 (282)
T 4f3v_A          187 FTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE  240 (282)
T ss_dssp             HHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence            999999999998544  54 3333          56789999999999999987

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.07  E-value=1.5e-09  Score=98.26  Aligned_cols=139  Identities=9%  Similarity=-0.093  Sum_probs=116.5

Q ss_pred             ChhhhhcCCCccccCC----CCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHH----hcCHHHHHHHHHHHHccCCc--
Q 014256           37 SLKSAKKPSPSGNSYS----RNYDPVSHISSSLMNEESTPDATSEKELGNECFK----QKKFKEAIDCYSRSIALSPT--  106 (428)
Q Consensus        37 ~~~~a~~~~~~~y~~g----~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~----~g~~~~Ai~~y~~al~~~p~--  106 (428)
                      +...+...+|..|..+    ++++|+.+|+++...  .+..+  ++.+|.+|..    .+++.+|+.+|.++++..+.  
T Consensus        48 g~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~A~~~--g~~~a--~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~  123 (212)
T 3rjv_A           48 GDGDALALLAQLKIRNPQQADYPQARQLAEKAVEA--GSKSG--EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDA  123 (212)
T ss_dssp             TCHHHHHHHHHHTTSSTTSCCHHHHHHHHHHHHHT--TCHHH--HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHH
T ss_pred             CCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHC--CCHHH--HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcc
Confidence            4445666667777336    899999999999765  45555  7799999998    88999999999999999984  


Q ss_pred             -HHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHhhCCCcH
Q 014256          107 -AVAYANRAMAYLK----LRRFQEAEDDCTEALNLDDRYIKAYSRRATARKEL-G-----KLKESIEDSEFALRLEPQNQ  175 (428)
Q Consensus       107 -~~~~~nla~~~~~----~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~l-g-----~~~eA~~~~~~al~l~P~~~  175 (428)
                       +.+++++|.+|..    .+++++|+.+|++++.+ +.++.+++++|.+|... |     ++++|+.+|+++....  +.
T Consensus       124 ~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g--~~  200 (212)
T 3rjv_A          124 AVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG--FD  200 (212)
T ss_dssp             HHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT--CH
T ss_pred             hHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC--CH
Confidence             8899999999999    88999999999999999 77788999999999865 3     8999999999999884  44


Q ss_pred             HHHHHHH
Q 014256          176 EIKKQLA  182 (428)
Q Consensus       176 ~~~~~l~  182 (428)
                      .+...+.
T Consensus       201 ~A~~~l~  207 (212)
T 3rjv_A          201 TGCEEFD  207 (212)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            4444433

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.07  E-value=4.8e-10  Score=94.25  Aligned_cols=123  Identities=16%  Similarity=0.206  Sum_probs=100.0

Q ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC-----
Q 014256           73 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-------AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY-----  140 (428)
Q Consensus        73 ~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-------~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~-----  140 (428)
                      .+..+..+|.+++..|+|++|+.+|.+++.+.+.       ..++.++|.++..+|++++|+..+.+++.+.+..     
T Consensus         8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~   87 (164)
T 3ro3_A            8 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV   87 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHH
Confidence            3456889999999999999999999999987543       3589999999999999999999999999886543     


Q ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc--HH----H----------HHHHHHHHHHHHHHHHhc
Q 014256          141 -IKAYSRRATARKELGKLKESIEDSEFALRLEPQN--QE----I----------KKQLAEVKSLYEKEVFQK  195 (428)
Q Consensus       141 -~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~--~~----~----------~~~l~~a~~~~~~a~~~~  195 (428)
                       ..+++++|.++..+|++++|+..+++++.+.+..  ..    +          .+++.+|...+.+++...
T Consensus        88 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  159 (164)
T 3ro3_A           88 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS  159 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence             6789999999999999999999999999874321  11    1          345566666666665543

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.01  E-value=1.8e-09  Score=85.45  Aligned_cols=71  Identities=15%  Similarity=0.191  Sum_probs=61.3

Q ss_pred             CCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 014256          104 SPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN  174 (428)
Q Consensus       104 ~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~  174 (428)
                      +|+ +.+++++|.+|+.+|+|++|+..|++++.++|+++.+|+++|.++..+|++++|+..|++++.+.|.+
T Consensus         3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~   74 (100)
T 3ma5_A            3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE   74 (100)
T ss_dssp             --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence            566 78889999999999999999999999999999999999999999999999999999999999887643

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.01  E-value=5.6e-09  Score=79.71  Aligned_cols=79  Identities=34%  Similarity=0.412  Sum_probs=74.2

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 014256          107 AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVK  185 (428)
Q Consensus       107 ~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~  185 (428)
                      +.+++++|.++...|++++|+..|.+++.++|.++.+++++|.++...|++++|+..|++++.++|++..+...+..+.
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~   87 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK   87 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            6789999999999999999999999999999999999999999999999999999999999999999998877666553

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.99  E-value=2.9e-09  Score=103.88  Aligned_cols=145  Identities=10%  Similarity=0.012  Sum_probs=118.6

Q ss_pred             cCCCCcchHHHHHhhhhcCCCCc---hHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-------HHHHHHHHHHHHH
Q 014256           50 SYSRNYDPVSHISSSLMNEESTP---DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-------AVAYANRAMAYLK  119 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~~~---~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-------~~~~~nla~~~~~  119 (428)
                      ..|++++|+..+++++...|...   .+..+..+|.++...|++++|+..|.+++.+.+.       ..++.++|.++..
T Consensus        26 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~  105 (373)
T 1hz4_A           26 NDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFA  105 (373)
T ss_dssp             HTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence            67999999999999999877543   2335778999999999999999999999987543       3457899999999


Q ss_pred             hcCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH-----HH---------
Q 014256          120 LRRFQEAEDDCTEALNLD--------DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQ-----EI---------  177 (428)
Q Consensus       120 ~~~~~eA~~~~~~al~l~--------p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~-----~~---------  177 (428)
                      +|++++|+..|.+++.+.        |....++.++|.++...|++++|...+++++.+.+...     ..         
T Consensus       106 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~  185 (373)
T 1hz4_A          106 QGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSL  185 (373)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHH
Confidence            999999999999999875        34567788999999999999999999999999987531     11         


Q ss_pred             -HHHHHHHHHHHHHHHHh
Q 014256          178 -KKQLAEVKSLYEKEVFQ  194 (428)
Q Consensus       178 -~~~l~~a~~~~~~a~~~  194 (428)
                       .+++.+|...+++++..
T Consensus       186 ~~g~~~~A~~~l~~a~~~  203 (373)
T 1hz4_A          186 ARGDLDNARSQLNRLENL  203 (373)
T ss_dssp             HHTCHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHH
Confidence             34566677777766654

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.99  E-value=4.8e-09  Score=83.18  Aligned_cols=68  Identities=18%  Similarity=0.207  Sum_probs=66.2

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 014256          107 AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN  174 (428)
Q Consensus       107 ~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~  174 (428)
                      +..++++|.+++..|+|++|+..|++++.++|.++.+++++|.++..+|++++|+..|++++.++|++
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~   71 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA   71 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence            56789999999999999999999999999999999999999999999999999999999999999998

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.96  E-value=2.4e-09  Score=84.67  Aligned_cols=87  Identities=17%  Similarity=0.249  Sum_probs=72.1

Q ss_pred             CCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC--CHHHH
Q 014256           68 EESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDR--YIKAY  144 (428)
Q Consensus        68 ~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~--~~~a~  144 (428)
                      +|++..+  ++.+|.+|+..|+|++|+.+|+++++++|+ +.+|+++|.+|..+|++++|+..|++++.+.|.  +..+.
T Consensus         3 ~p~~~~~--~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~   80 (100)
T 3ma5_A            3 DPEDPFT--RYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDL   80 (100)
T ss_dssp             --CCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred             CccCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHH
Confidence            5666666  889999999999999999999999999999 889999999999999999999999999998764  44445


Q ss_pred             HHHHHHHHHcCC
Q 014256          145 SRRATARKELGK  156 (428)
Q Consensus       145 ~~lg~~~~~lg~  156 (428)
                      ..+..++...+.
T Consensus        81 ~~l~~~l~~~~~   92 (100)
T 3ma5_A           81 SELQDAKLKAEG   92 (100)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHccc
Confidence            555555544443

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.86  E-value=3.4e-08  Score=100.53  Aligned_cols=136  Identities=15%  Similarity=0.063  Sum_probs=78.9

Q ss_pred             CCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHh-----cCHHHHHHHHHHHHccCCcHHHHHHHHHHHHHhc---C
Q 014256           51 YSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQ-----KKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLR---R  122 (428)
Q Consensus        51 ~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~-----g~~~~Ai~~y~~al~~~p~~~~~~nla~~~~~~~---~  122 (428)
                      .+++++|+.+|+++....  +..+  ++.+|.+|...     +++++|+.+|.++++..+ +.+++++|.+|...|   +
T Consensus       272 ~~d~~~A~~~~~~a~~~~--~~~a--~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~-~~a~~~lg~~y~~~g~~~~  346 (490)
T 2xm6_A          272 AKEPLKALEWYRKSAEQG--NSDG--QYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGD-ATAQANLGAIYFRLGSEEE  346 (490)
T ss_dssp             SCCHHHHHHHHHHHHTTT--CHHH--HHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHSCCHHH
T ss_pred             CCCHHHHHHHHHHHHHcC--CHHH--HHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCccc
Confidence            566666666666665542  2333  55666666665     666666666666665432 455666666666544   5


Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCcHHH--------------HHHHHHH
Q 014256          123 FQEAEDDCTEALNLDDRYIKAYSRRATARKE----LGKLKESIEDSEFALRLEPQNQEI--------------KKQLAEV  184 (428)
Q Consensus       123 ~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~----lg~~~eA~~~~~~al~l~P~~~~~--------------~~~l~~a  184 (428)
                      +++|+.+|++++..  .++.+++++|.+|..    .+++++|+..|++++...  ++.+              .+++.+|
T Consensus       347 ~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A  422 (490)
T 2xm6_A          347 HKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQA  422 (490)
T ss_dssp             HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred             HHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence            66666666666655  456666666666666    566666666666666543  2222              1234556


Q ss_pred             HHHHHHHHHhc
Q 014256          185 KSLYEKEVFQK  195 (428)
Q Consensus       185 ~~~~~~a~~~~  195 (428)
                      ...|++++...
T Consensus       423 ~~~~~~A~~~~  433 (490)
T 2xm6_A          423 WAWFDTASTND  433 (490)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHCC
Confidence            66666666655

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.85  E-value=7.3e-09  Score=105.88  Aligned_cols=119  Identities=9%  Similarity=-0.032  Sum_probs=86.3

Q ss_pred             cCCCCcchHHHHHhhhhcC-----CCCc-hHHHHHHHHHHHHHhcCHHHHHHHHHHHHcc-----C---Cc-HHHHHHHH
Q 014256           50 SYSRNYDPVSHISSSLMNE-----ESTP-DATSEKELGNECFKQKKFKEAIDCYSRSIAL-----S---PT-AVAYANRA  114 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~-----p~~~-~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~-----~---p~-~~~~~nla  114 (428)
                      .+|+|++|+..|+++|.+.     ++++ .+..+.++|.+|..+|+|++|+.+|++++.+     .   |+ +..++|+|
T Consensus       321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  400 (490)
T 3n71_A          321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAG  400 (490)
T ss_dssp             TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred             hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            6788888888888887752     2222 3455778888888888888888888888765     2   22 56688888


Q ss_pred             HHHHHhcCHHHHHHHHHHHHhc-----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 014256          115 MAYLKLRRFQEAEDDCTEALNL-----DDRYI---KAYSRRATARKELGKLKESIEDSEFAL  168 (428)
Q Consensus       115 ~~~~~~~~~~eA~~~~~~al~l-----~p~~~---~a~~~lg~~~~~lg~~~eA~~~~~~al  168 (428)
                      .+|..+|+|++|+..|.+|+.+     .|+++   .....++.++..+|+|++|...|.++.
T Consensus       401 ~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~  462 (490)
T 3n71_A          401 LTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMR  462 (490)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888888888888888754     45553   456677778878888877777776653

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.82  E-value=3.8e-08  Score=82.81  Aligned_cols=111  Identities=12%  Similarity=-0.002  Sum_probs=100.0

Q ss_pred             CCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCcHHHHHHHHHHHHH----hcCHHHHH
Q 014256           52 SRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLK----LRRFQEAE  127 (428)
Q Consensus        52 g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~~~~~~nla~~~~~----~~~~~eA~  127 (428)
                      +++++|+.+|.++....  +..+  .  +|.+|...+.+++|+.+|+++.+.. ++.+++++|.+|..    .+++++|+
T Consensus         9 ~d~~~A~~~~~~aa~~g--~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g-~~~a~~~Lg~~y~~G~g~~~d~~~A~   81 (138)
T 1klx_A            9 KDLKKAIQYYVKACELN--EMFG--C--LSLVSNSQINKQKLFQYLSKACELN-SGNGCRFLGDFYENGKYVKKDLRKAA   81 (138)
T ss_dssp             HHHHHHHHHHHHHHHTT--CTTH--H--HHHHTCTTSCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             cCHHHHHHHHHHHHcCC--CHhh--h--HHHHHHcCCCHHHHHHHHHHHHcCC-CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence            57789999999999886  3345  3  9999999999999999999999873 38899999999999    89999999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhC
Q 014256          128 DDCTEALNLDDRYIKAYSRRATARKE----LGKLKESIEDSEFALRLE  171 (428)
Q Consensus       128 ~~~~~al~l~p~~~~a~~~lg~~~~~----lg~~~eA~~~~~~al~l~  171 (428)
                      .+|+++...  .++.+++++|.+|..    .+++++|+.+|+++.+..
T Consensus        82 ~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A           82 QYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             HHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence            999999987  789999999999999    899999999999999884

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.82  E-value=2.5e-08  Score=101.46  Aligned_cols=150  Identities=16%  Similarity=-0.004  Sum_probs=105.5

Q ss_pred             ChhhhhcCCCccc-c----CCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHH----hcCHHHHHHHHHHHHccCCcH
Q 014256           37 SLKSAKKPSPSGN-S----YSRNYDPVSHISSSLMNEESTPDATSEKELGNECFK----QKKFKEAIDCYSRSIALSPTA  107 (428)
Q Consensus        37 ~~~~a~~~~~~~y-~----~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~----~g~~~~Ai~~y~~al~~~p~~  107 (428)
                      +...+...++..| .    .+++++|+.+|++++...  +..+  ++.+|.+|..    .+++++|+.+|+++++.. ++
T Consensus       217 ~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a--~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~-~~  291 (490)
T 2xm6_A          217 GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG--NSIA--QFRLGYILEQGLAGAKEPLKALEWYRKSAEQG-NS  291 (490)
T ss_dssp             TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT--CHHH--HHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT-CH
T ss_pred             CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHH--HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC-CH
Confidence            3344555555555 2    677888888888887654  3333  6678888877    788888888888887653 26


Q ss_pred             HHHHHHHHHHHHh-----cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCcHHH--
Q 014256          108 VAYANRAMAYLKL-----RRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG---KLKESIEDSEFALRLEPQNQEI--  177 (428)
Q Consensus       108 ~~~~nla~~~~~~-----~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg---~~~eA~~~~~~al~l~P~~~~~--  177 (428)
                      .+++++|.+|...     +++++|+.+|.++++.  .++.+++++|.++...|   ++++|+..|++++..  +++.+  
T Consensus       292 ~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~  367 (490)
T 2xm6_A          292 DGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQF  367 (490)
T ss_dssp             HHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHH
T ss_pred             HHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHH
Confidence            6777888888877     7888888888888775  45677888888887766   677888888888876  33433  


Q ss_pred             ------------HHHHHHHHHHHHHHHHhc
Q 014256          178 ------------KKQLAEVKSLYEKEVFQK  195 (428)
Q Consensus       178 ------------~~~l~~a~~~~~~a~~~~  195 (428)
                                  ..++.+|...|++++...
T Consensus       368 ~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~  397 (490)
T 2xm6_A          368 NLGNALLQGKGVKKDEQQAAIWMRKAAEQG  397 (490)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCCCCCCCHHHHHHHHHHHHhCC
Confidence                        134566777777777654

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.81  E-value=7.5e-09  Score=100.92  Aligned_cols=132  Identities=12%  Similarity=0.036  Sum_probs=111.7

Q ss_pred             hhcCCCccc-cCCCCcchHHHHHhhhhcCCCCc----hHHHHHHHHHHHHHhcCHHHHHHHHHHHHccC--------Cc-
Q 014256           41 AKKPSPSGN-SYSRNYDPVSHISSSLMNEESTP----DATSEKELGNECFKQKKFKEAIDCYSRSIALS--------PT-  106 (428)
Q Consensus        41 a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~----~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~--------p~-  106 (428)
                      ++..++..| ..|++++|+..|.+++...+...    .+..+..+|.++...|+|++|+.+|.+++.+.        |. 
T Consensus        55 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~  134 (373)
T 1hz4_A           55 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMH  134 (373)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHH
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHH
Confidence            344555556 78999999999999998765432    23447789999999999999999999999874        33 


Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 014256          107 AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDR-----YIKAYSRRATARKELGKLKESIEDSEFALRLEP  172 (428)
Q Consensus       107 ~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~-----~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P  172 (428)
                      ..++.++|.++...|++++|+..+.+++.+.+.     ...++..+|.++...|++++|...+++++.+.+
T Consensus       135 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~  205 (373)
T 1hz4_A          135 EFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLG  205 (373)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence            567889999999999999999999999998764     356889999999999999999999999998743

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.78  E-value=5.8e-08  Score=99.23  Aligned_cols=101  Identities=10%  Similarity=0.024  Sum_probs=85.5

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHcc-----CC---c-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----CCCC--
Q 014256           77 EKELGNECFKQKKFKEAIDCYSRSIAL-----SP---T-AVAYANRAMAYLKLRRFQEAEDDCTEALNL-----DDRY--  140 (428)
Q Consensus        77 ~~~lg~~~~~~g~~~~Ai~~y~~al~~-----~p---~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l-----~p~~--  140 (428)
                      ..+.+..+..+|+|++|+..|++++++     .|   + ...+.|+|.+|..+|+|++|+..+.+++.+     .|++  
T Consensus       312 ~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~  391 (490)
T 3n71_A          312 TLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQ  391 (490)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence            344556677899999999999999986     23   2 678999999999999999999999999965     3444  


Q ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCcHHH
Q 014256          141 -IKAYSRRATARKELGKLKESIEDSEFALRL-----EPQNQEI  177 (428)
Q Consensus       141 -~~a~~~lg~~~~~lg~~~eA~~~~~~al~l-----~P~~~~~  177 (428)
                       ...++++|.+|..+|+|++|+..|++++.+     -|+++..
T Consensus       392 ~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~  434 (490)
T 3n71_A          392 LGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPIT  434 (490)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHH
Confidence             567999999999999999999999999975     4777665

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.75  E-value=1.7e-08  Score=102.24  Aligned_cols=126  Identities=10%  Similarity=0.009  Sum_probs=84.4

Q ss_pred             hhcCCCccc-cCC---CCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHh----cCHHHHHHHHHHHHccCCc-HHHHH
Q 014256           41 AKKPSPSGN-SYS---RNYDPVSHISSSLMNEESTPDATSEKELGNECFKQ----KKFKEAIDCYSRSIALSPT-AVAYA  111 (428)
Q Consensus        41 a~~~~~~~y-~~g---~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~----g~~~~Ai~~y~~al~~~p~-~~~~~  111 (428)
                      +...+|..| ..|   ++++|+.+|.++....+.....  ++.+|.+|...    +++++|+.+|+++.   |. +.+++
T Consensus       178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~--~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~  252 (452)
T 3e4b_A          178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQR--VDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWV  252 (452)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHH--HHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHH
T ss_pred             HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHH--HHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHH
Confidence            444445455 556   7777777777777776554433  45777777554    57777777777776   54 66777


Q ss_pred             HHHHH-H--HHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhhCCCcHHH
Q 014256          112 NRAMA-Y--LKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG-----KLKESIEDSEFALRLEPQNQEI  177 (428)
Q Consensus       112 nla~~-~--~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg-----~~~eA~~~~~~al~l~P~~~~~  177 (428)
                      ++|.+ |  ...+++++|+.+|++++..+  ++.+++++|.+|. .|     ++++|+.+|+++.   |+++.+
T Consensus       253 ~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A  320 (452)
T 3e4b_A          253 SLAQLLYDFPELGDVEQMMKYLDNGRAAD--QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAA  320 (452)
T ss_dssp             HHHHHHHHSGGGCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHH
T ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHH
Confidence            77777 3  35667777777777777543  6777777777776 45     7777777777777   666655

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.72  E-value=6.7e-08  Score=92.41  Aligned_cols=136  Identities=10%  Similarity=-0.013  Sum_probs=85.0

Q ss_pred             hHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCC--c-HHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 014256           57 PVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSP--T-AVAYANRAMAYLKLRRFQEAEDDCTEA  133 (428)
Q Consensus        57 Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p--~-~~~~~nla~~~~~~~~~~eA~~~~~~a  133 (428)
                      |+..|++.+...+....+  +..+|.++...|++++|+.++.+++..+|  + ..++..++.+++++|+.+.|...+++.
T Consensus        85 a~~~l~~l~~~~~~~~~~--~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~  162 (310)
T 3mv2_B           85 NIEELENLLKDKQNSPYE--LYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY  162 (310)
T ss_dssp             CCHHHHHTTTTSCCCHHH--HHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCcHH--HHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            677777776654333333  45677777777777777777777777765  3 666777777777777777777777777


Q ss_pred             HhcCCC----CHHHHHHH--HHHHHHcC--CHHHHHHHHHHHHhhCCC--cHHH-------HHHHHHHHHHHHHHHHh
Q 014256          134 LNLDDR----YIKAYSRR--ATARKELG--KLKESIEDSEFALRLEPQ--NQEI-------KKQLAEVKSLYEKEVFQ  194 (428)
Q Consensus       134 l~l~p~----~~~a~~~l--g~~~~~lg--~~~eA~~~~~~al~l~P~--~~~~-------~~~l~~a~~~~~~a~~~  194 (428)
                      ...+|+    +-.....+  |.+....|  ++++|...|+++....|+  ....       .+++.+|...++..+..
T Consensus       163 ~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~  240 (310)
T 3mv2_B          163 TNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD  240 (310)
T ss_dssp             HHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred             HhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            777762    12223333  33344445  677777777777666665  2111       45566666666655544

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.71  E-value=1.2e-07  Score=80.62  Aligned_cols=94  Identities=13%  Similarity=0.039  Sum_probs=81.0

Q ss_pred             CHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhc---CHHHHHHHHHHHHhcC-C-CCHHHHHHHHHHHHHcCCHHHHHH
Q 014256           89 KFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLR---RFQEAEDDCTEALNLD-D-RYIKAYSRRATARKELGKLKESIE  162 (428)
Q Consensus        89 ~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~---~~~eA~~~~~~al~l~-p-~~~~a~~~lg~~~~~lg~~~eA~~  162 (428)
                      ....+...|.+.+..++. ..+.+++|.|+.+.+   ++++++..++..++.+ | .+..++|++|.+++++|+|++|+.
T Consensus        13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~   92 (152)
T 1pc2_A           13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK   92 (152)
T ss_dssp             HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence            345667777877776665 889999999999988   7779999999999998 7 678999999999999999999999


Q ss_pred             HHHHHHhhCCCcHHHHHHHH
Q 014256          163 DSEFALRLEPQNQEIKKQLA  182 (428)
Q Consensus       163 ~~~~al~l~P~~~~~~~~l~  182 (428)
                      +++++|+++|+|.++..-..
T Consensus        93 y~~~lL~ieP~n~QA~~Lk~  112 (152)
T 1pc2_A           93 YVRGLLQTEPQNNQAKELER  112 (152)
T ss_dssp             HHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHhcCCCCHHHHHHHH
Confidence            99999999999998864433

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.69  E-value=9.7e-08  Score=91.28  Aligned_cols=155  Identities=8%  Similarity=-0.082  Sum_probs=116.3

Q ss_pred             hhcCCCccc-cCCCCcchHHHHHhhhhcCC--CCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCC-----cHHHHHH
Q 014256           41 AKKPSPSGN-SYSRNYDPVSHISSSLMNEE--STPDATSEKELGNECFKQKKFKEAIDCYSRSIALSP-----TAVAYAN  112 (428)
Q Consensus        41 a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p--~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p-----~~~~~~n  112 (428)
                      ++..+|.++ ..|++++|+..+.+.+..+|  ...++  ....+.++.+.|+.+.|...+++..+.+|     +..+..+
T Consensus       102 ~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea--~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~  179 (310)
T 3mv2_B          102 ELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTEL--LLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILN  179 (310)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHH--HHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHH
Confidence            334666776 77899999999999988886  55555  55888999999999999999999888888     2333444


Q ss_pred             HH--HHHHHhc--CHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----------CCCcHH
Q 014256          113 RA--MAYLKLR--RFQEAEDDCTEALNLDDR--YIKAYSRRATARKELGKLKESIEDSEFALRL----------EPQNQE  176 (428)
Q Consensus       113 la--~~~~~~~--~~~eA~~~~~~al~l~p~--~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l----------~P~~~~  176 (428)
                      ++  .+.+..|  ++.+|...|+++....|+  .+..+++   ++..+|++++|...++.++++          +|+++.
T Consensus       180 Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~  256 (310)
T 3mv2_B          180 LAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPT  256 (310)
T ss_dssp             HHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHH
T ss_pred             HHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHH
Confidence            44  4466666  899999999998888876  3334444   888999999999999887776          477877


Q ss_pred             HHHHH--------HHHHHHHHHHHHhchhhhH
Q 014256          177 IKKQL--------AEVKSLYEKEVFQKASKTL  200 (428)
Q Consensus       177 ~~~~l--------~~a~~~~~~a~~~~~~~~~  200 (428)
                      +..++        .++.+++.+.....|.++.
T Consensus       257 ~LaN~i~l~~~lgk~a~~l~~qL~~~~P~hp~  288 (310)
T 3mv2_B          257 FLANQITLALMQGLDTEDLTNQLVKLDHEHAF  288 (310)
T ss_dssp             HHHHHHHHHHHTTCTTHHHHHHHHHTTCCCHH
T ss_pred             HHHHHHHHHHHhChHHHHHHHHHHHhCCCChH
Confidence            75332        2567788888888888776

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.67  E-value=8.7e-09  Score=102.27  Aligned_cols=137  Identities=8%  Similarity=-0.030  Sum_probs=114.3

Q ss_pred             cChhhhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchH----HHHHHHHHHHHHhcCHHHHHHHHHHHHccCC-----
Q 014256           36 SSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDA----TSEKELGNECFKQKKFKEAIDCYSRSIALSP-----  105 (428)
Q Consensus        36 ~~~~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a----~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p-----  105 (428)
                      +....++..+|..| ..|++++|+++|.+++...+....+    .....+|.++...|+++.|+.+|.+++...+     
T Consensus        52 ~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  131 (434)
T 4b4t_Q           52 NEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRV  131 (434)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCC
T ss_pred             hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCcc
Confidence            34455677788888 8999999999999999876654433    3356788888889999999999999987632     


Q ss_pred             -c-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 014256          106 -T-AVAYANRAMAYLKLRRFQEAEDDCTEALNL------DDRYIKAYSRRATARKELGKLKESIEDSEFALRLEP  172 (428)
Q Consensus       106 -~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l------~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P  172 (428)
                       . +.++.++|.+|..+|+|.+|...+.+++..      .+....++..+|.+|..+|+|.+|...+++++.+.+
T Consensus       132 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~  206 (434)
T 4b4t_Q          132 FLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAAN  206 (434)
T ss_dssp             SSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhh
Confidence             2 778999999999999999999999998865      234477899999999999999999999999998753

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.65  E-value=4e-08  Score=97.43  Aligned_cols=147  Identities=14%  Similarity=0.010  Sum_probs=118.0

Q ss_pred             cCCCCcchHHHHHhhhhcCCCCch---------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-------H
Q 014256           50 SYSRNYDPVSHISSSLMNEESTPD---------------ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-------A  107 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~~~~---------------a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-------~  107 (428)
                      ..|+|++|++.|.+++...+....               ..++..+|.+|...|+|++|+++|.+++...+.       .
T Consensus        16 ~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~   95 (434)
T 4b4t_Q           16 NEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVK   95 (434)
T ss_dssp             HHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHH
Confidence            568999999999999998876432               123779999999999999999999999886543       3


Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------cH
Q 014256          108 VAYANRAMAYLKLRRFQEAEDDCTEALNLDD------RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQ------NQ  175 (428)
Q Consensus       108 ~~~~nla~~~~~~~~~~eA~~~~~~al~l~p------~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~------~~  175 (428)
                      .+..++|.++...|++++|+..|..++.+.+      ....++.++|.++...|+|.+|...+.+++.....      ..
T Consensus        96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~  175 (434)
T 4b4t_Q           96 VLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLV  175 (434)
T ss_dssp             HHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHH
Confidence            4567789999999999999999999987643      34778999999999999999999999999876321      11


Q ss_pred             HH----------HHHHHHHHHHHHHHHHhch
Q 014256          176 EI----------KKQLAEVKSLYEKEVFQKA  196 (428)
Q Consensus       176 ~~----------~~~l~~a~~~~~~a~~~~~  196 (428)
                      ++          .+++.+|...+++++...+
T Consensus       176 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~  206 (434)
T 4b4t_Q          176 DVHLLESKVYHKLRNLAKSKASLTAARTAAN  206 (434)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHHHhh
Confidence            11          4567788888888876653

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.65  E-value=2.1e-07  Score=94.13  Aligned_cols=135  Identities=10%  Similarity=0.002  Sum_probs=111.1

Q ss_pred             CCCcchHHHHHhhhhcCCCCchHHHHHHHHHH-H--HHhcCHHHHHHHHHHHHccCCcHHHHHHHHHHHHHhc-----CH
Q 014256           52 SRNYDPVSHISSSLMNEESTPDATSEKELGNE-C--FKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLR-----RF  123 (428)
Q Consensus        52 g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~-~--~~~g~~~~Ai~~y~~al~~~p~~~~~~nla~~~~~~~-----~~  123 (428)
                      +++++|+.+|+++.   |.+..+  ++.+|.+ +  ...+++++|+.+|+++++.. ++.+++++|.+|. .|     ++
T Consensus       231 ~d~~~A~~~~~~aa---~g~~~a--~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g-~~~A~~~Lg~~y~-~G~g~~~d~  303 (452)
T 3e4b_A          231 PDEKTAQALLEKIA---PGYPAS--WVSLAQLLYDFPELGDVEQMMKYLDNGRAAD-QPRAELLLGKLYY-EGKWVPADA  303 (452)
T ss_dssp             CCHHHHHHHHHHHG---GGSTHH--HHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHH-HCSSSCCCH
T ss_pred             CCHHHHHHHHHHHc---CCCHHH--HHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHH-cCCCCCCCH
Confidence            68999999999998   667777  7799998 4  46899999999999999764 4889999999998 66     99


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCcHHH------------HHHHHHHHHH
Q 014256          124 QEAEDDCTEALNLDDRYIKAYSRRATARKE----LGKLKESIEDSEFALRLEPQNQEI------------KKQLAEVKSL  187 (428)
Q Consensus       124 ~eA~~~~~~al~l~p~~~~a~~~lg~~~~~----lg~~~eA~~~~~~al~l~P~~~~~------------~~~l~~a~~~  187 (428)
                      ++|+.+|.+++   +.++.+++++|.+|..    ..++++|+.+|+++..........            ..++.+|..+
T Consensus       304 ~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~  380 (452)
T 3e4b_A          304 KAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVF  380 (452)
T ss_dssp             HHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHH
T ss_pred             HHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHH
Confidence            99999999999   9999999999999887    349999999999998764333222            1245677778


Q ss_pred             HHHHHHhch
Q 014256          188 YEKEVFQKA  196 (428)
Q Consensus       188 ~~~a~~~~~  196 (428)
                      |.++.....
T Consensus       381 ~~~A~~~g~  389 (452)
T 3e4b_A          381 SQLAKAQDT  389 (452)
T ss_dssp             HHHHHTTCC
T ss_pred             HHHHHHCCC
Confidence            887776553

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.59  E-value=3.5e-07  Score=89.07  Aligned_cols=121  Identities=12%  Similarity=0.082  Sum_probs=80.2

Q ss_pred             CCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcC-------HHHHHH-HHHH--HHccCCc-HHHHHHHHHHHHHh
Q 014256           52 SRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKK-------FKEAID-CYSR--SIALSPT-AVAYANRAMAYLKL  120 (428)
Q Consensus        52 g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~-------~~~Ai~-~y~~--al~~~p~-~~~~~nla~~~~~~  120 (428)
                      ..+.+|+.+|+++++.+|++..+.+  .++.+|+....       ...++. .+..  ++..+|. +.+|..+|..++..
T Consensus       213 ~~~~~A~~l~e~Al~lDP~~a~A~A--~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~  290 (372)
T 3ly7_A          213 KSLNRASELLGEIVQSSPEFTYARA--EKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVK  290 (372)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHH--HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCCHHHHH--HHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhC
Confidence            3456788888888888888777644  44544432111       111111 1221  2233455 77777777777777


Q ss_pred             cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH
Q 014256          121 RRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQ  175 (428)
Q Consensus       121 ~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~  175 (428)
                      |++++|+..+++|+.++|+ ..+|..+|.++...|++++|+..|.++++++|...
T Consensus       291 gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~  344 (372)
T 3ly7_A          291 GKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN  344 (372)
T ss_dssp             TCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred             CCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence            8888888888888888764 56777788888888888888888888888888764

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.57  E-value=3.6e-07  Score=101.64  Aligned_cols=95  Identities=20%  Similarity=0.265  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHccCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC------------------
Q 014256           77 EKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDD------------------  138 (428)
Q Consensus        77 ~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p------------------  138 (428)
                      +..+|..++..|+|++|+.+|.++       ..|..+|.+|.++|+|++|++.+.+|...++                  
T Consensus      1198 ~~~iGd~le~eg~YeeA~~~Y~kA-------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~ 1270 (1630)
T 1xi4_A         1198 IQQVGDRCYDEKMYDAAKLLYNNV-------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQ 1270 (1630)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHhh-------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHH
Confidence            445666666666666666666664       3566667777777777777777766633322                  


Q ss_pred             -------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHH
Q 014256          139 -------RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK  178 (428)
Q Consensus       139 -------~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~  178 (428)
                             .++..+..++..|...|.|++|+..+++++.++|.+....
T Consensus      1271 ~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmf 1317 (1630)
T 1xi4_A         1271 MCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMF 1317 (1630)
T ss_pred             HHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHH
Confidence                   1223334445555666666666666666666666555443

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.57  E-value=6e-07  Score=71.50  Aligned_cols=72  Identities=13%  Similarity=0.056  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHccC-------Cc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 014256           77 EKELGNECFKQKKFKEAIDCYSRSIALS-------PT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRA  148 (428)
Q Consensus        77 ~~~lg~~~~~~g~~~~Ai~~y~~al~~~-------p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg  148 (428)
                      .+.+|..++..|+|..|+.+|+.++...       +. ..++.++|.||.++|+++.|+..+++++.++|++..+..+++
T Consensus         8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~   87 (104)
T 2v5f_A            8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK   87 (104)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence            5667777777777777777777776642       11 445555566666666666666666666666665555555554

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.55  E-value=4.9e-07  Score=70.72  Aligned_cols=71  Identities=21%  Similarity=0.123  Sum_probs=63.7

Q ss_pred             CCc-HHHHHHHHHHHHHhcC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 014256          104 SPT-AVAYANRAMAYLKLRR---FQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN  174 (428)
Q Consensus       104 ~p~-~~~~~nla~~~~~~~~---~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~  174 (428)
                      +|+ +..+..+|.+++..++   .++|...+.+++.+||+++.+++.+|..++..|+|++|+..|++++..+|.+
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~   76 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN   76 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            455 8888999999876665   7999999999999999999999999999999999999999999999999884

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.54  E-value=1.1e-06  Score=69.99  Aligned_cols=78  Identities=15%  Similarity=0.065  Sum_probs=69.3

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHH
Q 014256          107 AVAYANRAMAYLKLRRFQEAEDDCTEALNLD-------DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKK  179 (428)
Q Consensus       107 ~~~~~nla~~~~~~~~~~eA~~~~~~al~l~-------p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~  179 (428)
                      +.-.+.+|..++..++|..|+.++..|+...       +..+.++..+|.++..+|+++.|+..++++++++|++..+..
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~   84 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence            4456889999999999999999999999863       346789999999999999999999999999999999999877


Q ss_pred             HHHHH
Q 014256          180 QLAEV  184 (428)
Q Consensus       180 ~l~~a  184 (428)
                      ++.-.
T Consensus        85 n~~~~   89 (104)
T 2v5f_A           85 NLKYF   89 (104)
T ss_dssp             HHHHH
T ss_pred             hHHHH
Confidence            76533

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.54  E-value=4.3e-07  Score=91.34  Aligned_cols=97  Identities=8%  Similarity=-0.034  Sum_probs=81.2

Q ss_pred             HHHHHhcCHHHHHHHHHHHHcc-----CCc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----CCCC---HHHH
Q 014256           82 NECFKQKKFKEAIDCYSRSIAL-----SPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNL-----DDRY---IKAY  144 (428)
Q Consensus        82 ~~~~~~g~~~~Ai~~y~~al~~-----~p~----~~~~~nla~~~~~~~~~~eA~~~~~~al~l-----~p~~---~~a~  144 (428)
                      ......|+|++|+..|++++++     .|+    ...+.|+|.+|..+|+|++|+..|.+++.+     .|++   ...+
T Consensus       306 ~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l  385 (433)
T 3qww_A          306 RRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMW  385 (433)
T ss_dssp             HHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred             HHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHH
Confidence            3334468999999999999985     333    678999999999999999999999999965     3444   5679


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCcHHHH
Q 014256          145 SRRATARKELGKLKESIEDSEFALRLE-----PQNQEIK  178 (428)
Q Consensus       145 ~~lg~~~~~lg~~~eA~~~~~~al~l~-----P~~~~~~  178 (428)
                      +++|.+|..+|+|++|+..|++++.+.     |+++...
T Consensus       386 ~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~  424 (433)
T 3qww_A          386 LKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS  424 (433)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence            999999999999999999999999764     6776654

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.54  E-value=7.9e-07  Score=89.34  Aligned_cols=101  Identities=11%  Similarity=0.046  Sum_probs=84.6

Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHccC-----Cc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----CCCC---
Q 014256           78 KELGNECFKQKKFKEAIDCYSRSIALS-----PT----AVAYANRAMAYLKLRRFQEAEDDCTEALNL-----DDRY---  140 (428)
Q Consensus        78 ~~lg~~~~~~g~~~~Ai~~y~~al~~~-----p~----~~~~~nla~~~~~~~~~~eA~~~~~~al~l-----~p~~---  140 (428)
                      ......+..+|+|++|+..|++++++.     |+    ...+.|+|.+|..+|+|++|+..|.+++.+     .|++   
T Consensus       291 l~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~  370 (429)
T 3qwp_A          291 LKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVR  370 (429)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHH
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHH
Confidence            344455778899999999999999762     33    678999999999999999999999999965     3444   


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCcHHHH
Q 014256          141 IKAYSRRATARKELGKLKESIEDSEFALRL-----EPQNQEIK  178 (428)
Q Consensus       141 ~~a~~~lg~~~~~lg~~~eA~~~~~~al~l-----~P~~~~~~  178 (428)
                      ...++++|.+|..+|+|++|+..|++++.+     -|+++...
T Consensus       371 a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~  413 (429)
T 3qwp_A          371 GVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIE  413 (429)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHH
Confidence            567999999999999999999999999975     47776654

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=98.53  E-value=6.2e-07  Score=89.57  Aligned_cols=131  Identities=13%  Similarity=0.077  Sum_probs=98.6

Q ss_pred             hhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCcHHHHHHHHHHHH
Q 014256           40 SAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYL  118 (428)
Q Consensus        40 ~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~~~~~~nla~~~~  118 (428)
                      .++..+|..| ..|.|++|+.+|.++    +    .  |..+|.++++.|+|++|+++|.++    .++.+|...+.++.
T Consensus       123 ~a~~~IGd~~~~~g~yeeA~~~Y~~a----~----n--~~~LA~~L~~Lg~yq~AVea~~KA----~~~~~Wk~v~~aCv  188 (449)
T 1b89_A          123 AHIQQVGDRCYDEKMYDAAKLLYNNV----S----N--FGRLASTLVHLGEYQAAVDGARKA----NSTRTWKEVCFACV  188 (449)
T ss_dssp             --------------CTTTHHHHHHHT----T----C--HHHHHHHHHTTTCHHHHHHHHHHH----TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHh----h----h--HHHHHHHHHHhccHHHHHHHHHHc----CCchhHHHHHHHHH
Confidence            3778888888 999999999999987    1    2  779999999999999999999999    24788999999999


Q ss_pred             HhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Q 014256          119 KLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLY  188 (428)
Q Consensus       119 ~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~  188 (428)
                      ..|+|+.|..+... +..+|++   ...+...|...|++++|+..+++++.+++.+..+...+..+...|
T Consensus       189 ~~~ef~lA~~~~l~-L~~~ad~---l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky  254 (449)
T 1b89_A          189 DGKEFRLAQMCGLH-IVVHADE---LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF  254 (449)
T ss_dssp             HTTCHHHHHHTTTT-TTTCHHH---HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT
T ss_pred             HcCcHHHHHHHHHH-HHhCHhh---HHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhc
Confidence            99999999776554 4455554   446888999999999999999999999999988877776554443

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=98.52  E-value=3.3e-08  Score=98.74  Aligned_cols=144  Identities=11%  Similarity=0.148  Sum_probs=62.4

Q ss_pred             hhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchH--------------------------HHHHHHHHHHHHhcCHHHH
Q 014256           41 AKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDA--------------------------TSEKELGNECFKQKKFKEA   93 (428)
Q Consensus        41 a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a--------------------------~~~~~lg~~~~~~g~~~~A   93 (428)
                      .+..++.++ ..|++++|+.++..+.+..++ +..                          ..|..+|..|+..|+|++|
T Consensus        63 ~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~~pn~~a~~~IGd~~~~~g~yeeA  141 (449)
T 1b89_A           63 SYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAA  141 (449)
T ss_dssp             -----------------------------------------------CHHHHTTTTTCC----------------CTTTH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHhCCHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHH
Confidence            444444444 667777777777776654211 111                          1256666666667777777


Q ss_pred             HHHHHHHHccCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 014256           94 IDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQ  173 (428)
Q Consensus        94 i~~y~~al~~~p~~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~  173 (428)
                      +.+|.++       ..|..+|.|+.++|+|++|++.+.++     .++.+|...+.++...|+++.|...... +.++|+
T Consensus       142 ~~~Y~~a-------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad  208 (449)
T 1b89_A          142 KLLYNNV-------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHAD  208 (449)
T ss_dssp             HHHHHHT-------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHH
T ss_pred             HHHHHHh-------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHh
Confidence            7776654       24666677777777777777777776     3566677777777777777777555543 224444


Q ss_pred             cHHH-------HHHHHHHHHHHHHHHHhchhh
Q 014256          174 NQEI-------KKQLAEVKSLYEKEVFQKASK  198 (428)
Q Consensus       174 ~~~~-------~~~l~~a~~~~~~a~~~~~~~  198 (428)
                      +...       .+.+.+|+.++++++.+++.+
T Consensus       209 ~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah  240 (449)
T 1b89_A          209 ELEELINYYQDRGYFEELITMLEAALGLERAH  240 (449)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCC
T ss_pred             hHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHH
Confidence            3222       356777888888887777554

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.51  E-value=1.2e-06  Score=85.34  Aligned_cols=138  Identities=14%  Similarity=0.066  Sum_probs=108.3

Q ss_pred             hhhhcCCCCchHHHHHHHHHHHHHhc---CHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHH-------HHH-HHH
Q 014256           63 SSLMNEESTPDATSEKELGNECFKQK---KFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQ-------EAE-DDC  130 (428)
Q Consensus        63 ~al~~~p~~~~a~~~~~lg~~~~~~g---~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~-------eA~-~~~  130 (428)
                      ++....|.+..++.++.+|..++..+   ++.+|+.+|+++++++|+ +.+|..++.||.....+.       .++ ..+
T Consensus       185 r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~  264 (372)
T 3ly7_A          185 TLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEI  264 (372)
T ss_dssp             HHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred             HHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHH
Confidence            34445677788888899999888764   468999999999999999 888888888886432211       111 112


Q ss_pred             H--HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH---------HHHHHHHHHHHHHHHHHhchhhh
Q 014256          131 T--EALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE---------IKKQLAEVKSLYEKEVFQKASKT  199 (428)
Q Consensus       131 ~--~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~---------~~~~l~~a~~~~~~a~~~~~~~~  199 (428)
                      .  .++..+|.++.++..+|.++...|++++|+..+++++.++|+...         ..++.++|...|.+++.++|...
T Consensus       265 ~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~  344 (372)
T 3ly7_A          265 DNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN  344 (372)
T ss_dssp             HHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred             HHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence            2  234678999999999999999999999999999999999987432         14678899999999999999875


Q ss_pred             H
Q 014256          200 L  200 (428)
Q Consensus       200 ~  200 (428)
                      .
T Consensus       345 t  345 (372)
T 3ly7_A          345 T  345 (372)
T ss_dssp             H
T ss_pred             h
Confidence            4

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.49  E-value=8.9e-07  Score=75.32  Aligned_cols=98  Identities=9%  Similarity=0.009  Sum_probs=84.0

Q ss_pred             CCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhc---CHHHHHHHHHHHHccC-C-c-HHHHHHHHHHHHHhcCHHH
Q 014256           52 SRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQK---KFKEAIDCYSRSIALS-P-T-AVAYANRAMAYLKLRRFQE  125 (428)
Q Consensus        52 g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g---~~~~Ai~~y~~al~~~-p-~-~~~~~nla~~~~~~~~~~e  125 (428)
                      .....+...|.+.+..++...++  .+++|+++.+.+   ++.+++..++.++..+ | . ..+++++|..|+++|+|++
T Consensus        12 ~~l~~~~~~y~~e~~~~~~~~~~--~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~   89 (152)
T 1pc2_A           12 EDLLKFEKKFQSEKAAGSVSKST--QFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK   89 (152)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCHHH--HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred             HHHHHHHHHHHHHHccCCCcHHH--HHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHH
Confidence            34456788888888877765555  789999999987   7889999999999999 7 3 7899999999999999999


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHH
Q 014256          126 AEDDCTEALNLDDRYIKAYSRRATAR  151 (428)
Q Consensus       126 A~~~~~~al~l~p~~~~a~~~lg~~~  151 (428)
                      |..+|+++++++|+|..+...+..+.
T Consensus        90 A~~y~~~lL~ieP~n~QA~~Lk~~ie  115 (152)
T 1pc2_A           90 ALKYVRGLLQTEPQNNQAKELERLID  115 (152)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            99999999999999988876655444

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.47  E-value=4.5e-07  Score=100.87  Aligned_cols=119  Identities=6%  Similarity=-0.019  Sum_probs=67.1

Q ss_pred             cChhhhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCcHHHHHHHH
Q 014256           36 SSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRA  114 (428)
Q Consensus        36 ~~~~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~~~~~~nla  114 (428)
                      -+...+...+|.++ ..|++.+|+..|.++     ++..+  +.+.|.++.+.|+|++|+++|..+++..+.+.+...+|
T Consensus      1102 vn~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~sa--y~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~La 1174 (1630)
T 1xi4_A         1102 CNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSS--YMEVVQAANTSGNWEELVKYLQMARKKARESYVETELI 1174 (1630)
T ss_pred             cCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHH--HHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHH
Confidence            34445556666666 777777777777665     33334  66777777777777777777777766554322222344


Q ss_pred             HHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 014256          115 MAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFA  167 (428)
Q Consensus       115 ~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a  167 (428)
                      .+|.+++++++ ++.|-     ...+...+.++|..+...|+|++|...|.++
T Consensus      1175 faYAKl~rlee-le~fI-----~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA 1221 (1630)
T 1xi4_A         1175 FALAKTNRLAE-LEEFI-----NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 1221 (1630)
T ss_pred             HHHHhhcCHHH-HHHHH-----hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh
Confidence            44444444442 22221     1223334455566666666666666655554

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.35  E-value=8.1e-07  Score=89.28  Aligned_cols=94  Identities=14%  Similarity=0.106  Sum_probs=79.1

Q ss_pred             cCCCCcchHHHHHhhhhc-----CCCCc-hHHHHHHHHHHHHHhcCHHHHHHHHHHHHcc--------CCc-HHHHHHHH
Q 014256           50 SYSRNYDPVSHISSSLMN-----EESTP-DATSEKELGNECFKQKKFKEAIDCYSRSIAL--------SPT-AVAYANRA  114 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~-----~p~~~-~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~--------~p~-~~~~~nla  114 (428)
                      ..|+|++|+..|+++|.+     .|+++ .+..+.++|.+|..+|+|++|+.+|++++.+        +|+ +..++|+|
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            468899999999999886     34443 3556889999999999999999999999986        233 67899999


Q ss_pred             HHHHHhcCHHHHHHHHHHHHhc-----CCCCHHH
Q 014256          115 MAYLKLRRFQEAEDDCTEALNL-----DDRYIKA  143 (428)
Q Consensus       115 ~~~~~~~~~~eA~~~~~~al~l-----~p~~~~a  143 (428)
                      .+|..+|+|++|+..|.+|+.+     .|+++..
T Consensus       390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~  423 (433)
T 3qww_A          390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI  423 (433)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred             HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence            9999999999999999999975     4666644

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.33  E-value=1.1e-06  Score=88.27  Aligned_cols=112  Identities=10%  Similarity=0.032  Sum_probs=87.9

Q ss_pred             cCCCccccCCCCcchHHHHHhhhhcC-----CCC-chHHHHHHHHHHHHHhcCHHHHHHHHHHHHcc--------CCc-H
Q 014256           43 KPSPSGNSYSRNYDPVSHISSSLMNE-----EST-PDATSEKELGNECFKQKKFKEAIDCYSRSIAL--------SPT-A  107 (428)
Q Consensus        43 ~~~~~~y~~g~~~~Ai~~~~~al~~~-----p~~-~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~--------~p~-~  107 (428)
                      ..+...+..|+|++|+..|++++.+.     |++ ..+..+.++|.+|..+|+|++|+.+|.+++.+        +|. +
T Consensus       292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a  371 (429)
T 3qwp_A          292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG  371 (429)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence            33444457899999999999999863     333 24556889999999999999999999999976        233 6


Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----CCCCHH---HHHHHHHHHHHc
Q 014256          108 VAYANRAMAYLKLRRFQEAEDDCTEALNL-----DDRYIK---AYSRRATARKEL  154 (428)
Q Consensus       108 ~~~~nla~~~~~~~~~~eA~~~~~~al~l-----~p~~~~---a~~~lg~~~~~l  154 (428)
                      ..++|+|.+|..+|+|++|+..+.+|+.+     .|+++.   ++.+++.++..+
T Consensus       372 ~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~  426 (429)
T 3qwp_A          372 VQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI  426 (429)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence            77999999999999999999999999975     466654   455566665443

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.23  E-value=5.6e-06  Score=64.60  Aligned_cols=71  Identities=21%  Similarity=0.135  Sum_probs=62.6

Q ss_pred             CCCCchHHHHHHHHHHHHHhcC---HHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 014256           68 EESTPDATSEKELGNECFKQKK---FKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY  140 (428)
Q Consensus        68 ~p~~~~a~~~~~lg~~~~~~g~---~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~  140 (428)
                      +|.++..  +..+|.+++..++   ..+|...+.+++.++|+ ..+++.+|..++..|+|++|+..+++++..+|..
T Consensus         2 ~p~~~~~--~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~   76 (93)
T 3bee_A            2 NAVTATQ--LAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN   76 (93)
T ss_dssp             CCCCHHH--HHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred             CCCCHHH--HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            4566555  7799999986666   79999999999999999 8999999999999999999999999999999984

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.17  E-value=2.1e-05  Score=73.81  Aligned_cols=108  Identities=13%  Similarity=0.018  Sum_probs=90.4

Q ss_pred             cCCCCchHHHHHHHHHHHH-H--hc------CHHHHHHHHHHHHccCCc---HHHHHHHHHHHHHh-----cCHHHHHHH
Q 014256           67 NEESTPDATSEKELGNECF-K--QK------KFKEAIDCYSRSIALSPT---AVAYANRAMAYLKL-----RRFQEAEDD  129 (428)
Q Consensus        67 ~~p~~~~a~~~~~lg~~~~-~--~g------~~~~Ai~~y~~al~~~p~---~~~~~nla~~~~~~-----~~~~eA~~~  129 (428)
                      .+|.+.++..|...+..-. .  .|      ....|...++++++++|+   ..+|..+|..|.+.     |+.+.|...
T Consensus       147 ~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~  226 (301)
T 3u64_A          147 CTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTA  226 (301)
T ss_dssp             CCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHH
T ss_pred             cCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHH
Confidence            3556666666666665443 2  13      367899999999999999   56899999999996     999999999


Q ss_pred             HHHHHhcCCCC-HHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCc
Q 014256          130 CTEALNLDDRY-IKAYSRRATARKE-LGKLKESIEDSEFALRLEPQN  174 (428)
Q Consensus       130 ~~~al~l~p~~-~~a~~~lg~~~~~-lg~~~eA~~~~~~al~l~P~~  174 (428)
                      |++|+.++|+. ..+++..|..+.. .|++++|...+++++...|..
T Consensus       227 ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~  273 (301)
T 3u64_A          227 FEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES  273 (301)
T ss_dssp             HHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred             HHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence            99999999975 9999999999988 499999999999999988763

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.15  E-value=3.8e-05  Score=62.93  Aligned_cols=98  Identities=13%  Similarity=0.031  Sum_probs=79.9

Q ss_pred             hcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHH---HHHHHHHHHhcC-C-CCHHHHHHHHHHHHHcCCHHHH
Q 014256           87 QKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQE---AEDDCTEALNLD-D-RYIKAYSRRATARKELGKLKES  160 (428)
Q Consensus        87 ~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~e---A~~~~~~al~l~-p-~~~~a~~~lg~~~~~lg~~~eA  160 (428)
                      ......+...|.+.+..++. ..+.+++|.++.+......   ++..++..+..+ | ..-..+|.+|..++++|+|.+|
T Consensus        14 ~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A   93 (126)
T 1nzn_A           14 VEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA   93 (126)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence            34455667777777775544 8899999999999887666   999999998887 5 5678999999999999999999


Q ss_pred             HHHHHHHHhhCCCcHHHHHHHHHH
Q 014256          161 IEDSEFALRLEPQNQEIKKQLAEV  184 (428)
Q Consensus       161 ~~~~~~al~l~P~~~~~~~~l~~a  184 (428)
                      +.+++.+|+++|+|.++......+
T Consensus        94 ~~~~~~lL~~eP~n~QA~~Lk~~i  117 (126)
T 1nzn_A           94 LKYVRGLLQTEPQNNQAKELERLI  117 (126)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHH
Confidence            999999999999999886544333

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.14  E-value=1.1e-05  Score=67.57  Aligned_cols=97  Identities=13%  Similarity=0.058  Sum_probs=80.8

Q ss_pred             CCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHH----hcCHHHHHHHHHHHHccCCcHHHHHHHHHHHHH
Q 014256           45 SPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFK----QKKFKEAIDCYSRSIALSPTAVAYANRAMAYLK  119 (428)
Q Consensus        45 ~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~----~g~~~~Ai~~y~~al~~~p~~~~~~nla~~~~~  119 (428)
                      ++..| ..+..++|+.+|+++....  +..+  ++++|.+|..    .+++++|+.+|+++.+.. ++.+++++|.+|..
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~g--~~~a--~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g-~~~a~~~Lg~~y~~  105 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACELN--SGNG--CRFLGDFYENGKYVKKDLRKAAQYYSKACGLN-DQDGCLILGYKQYA  105 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHTT--CHHH--HHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcCC--CHHH--HHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC-CHHHHHHHHHHHHC
Confidence            66777 5566778999999999874  4455  7899999999    899999999999999873 38899999999999


Q ss_pred             ----hcCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 014256          120 ----LRRFQEAEDDCTEALNLDDRYIKAYSRRA  148 (428)
Q Consensus       120 ----~~~~~eA~~~~~~al~l~p~~~~a~~~lg  148 (428)
                          .+++++|+.+|++|.+..  ++.+..+++
T Consensus       106 G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~l~  136 (138)
T 1klx_A          106 GKGVVKNEKQAVKTFEKACRLG--SEDACGILN  136 (138)
T ss_dssp             TSSSCCCHHHHHHHHHHHHHTT--CHHHHHHC-
T ss_pred             CCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHh
Confidence                899999999999999874  455655554

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=97.97  E-value=7.2e-05  Score=79.29  Aligned_cols=145  Identities=13%  Similarity=0.088  Sum_probs=94.4

Q ss_pred             cCCCCcchH-HHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccC-----------C-----------c
Q 014256           50 SYSRNYDPV-SHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALS-----------P-----------T  106 (428)
Q Consensus        50 ~~g~~~~Ai-~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~-----------p-----------~  106 (428)
                      ..|+.++|. ..|.+++...|.....  |..++......|+++.|...|++++..-           |           .
T Consensus       355 ~~~~~~~a~r~il~rAi~~~P~s~~L--wl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~  432 (679)
T 4e6h_A          355 EKNTDSTVITKYLKLGQQCIPNSAVL--AFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSK  432 (679)
T ss_dssp             HHSCCTTHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             hcCcHHHHHHHHHHHHHHhCCCCHHH--HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccc
Confidence            456666775 7777777777765433  5566777777777777777777777641           3           1


Q ss_pred             -HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCcHHHH-----
Q 014256          107 -AVAYANRAMAYLKLRRFQEAEDDCTEALNL-DDRYIKAYSRRATARKELGK-LKESIEDSEFALRLEPQNQEIK-----  178 (428)
Q Consensus       107 -~~~~~nla~~~~~~~~~~eA~~~~~~al~l-~p~~~~a~~~lg~~~~~lg~-~~eA~~~~~~al~l~P~~~~~~-----  178 (428)
                       ..+|...+......|..+.|...|.+|+.. .+.....|...|......|+ ++.|...|+.+++..|+++..+     
T Consensus       433 ~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~  512 (679)
T 4e6h_A          433 LTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLD  512 (679)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHH
Confidence             235666666666677777777777777766 43445566666666555544 7777777777777777766552     


Q ss_pred             -----HHHHHHHHHHHHHHHhch
Q 014256          179 -----KQLAEVKSLYEKEVFQKA  196 (428)
Q Consensus       179 -----~~l~~a~~~~~~a~~~~~  196 (428)
                           +....|..+|++++...+
T Consensus       513 fe~~~~~~~~AR~lferal~~~~  535 (679)
T 4e6h_A          513 FLIYVNEESQVKSLFESSIDKIS  535 (679)
T ss_dssp             HHHHHTCHHHHHHHHHHHTTTSS
T ss_pred             HHHhCCCHHHHHHHHHHHHHhcC
Confidence                 234566667777766554

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.83  E-value=0.00015  Score=59.47  Aligned_cols=95  Identities=8%  Similarity=-0.009  Sum_probs=78.6

Q ss_pred             cchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHH---HHHHHHHHHccC-Cc--HHHHHHHHHHHHHhcCHHHHHH
Q 014256           55 YDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKE---AIDCYSRSIALS-PT--AVAYANRAMAYLKLRRFQEAED  128 (428)
Q Consensus        55 ~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~---Ai~~y~~al~~~-p~--~~~~~nla~~~~~~~~~~eA~~  128 (428)
                      ..+...|.+.+..++....+  .+++|+++.+..+..+   +|.++...+..+ |.  -...+.+|..++++|+|..|..
T Consensus        18 ~~~~~~y~~e~~~~~~s~~~--~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~   95 (126)
T 1nzn_A           18 LKFEKKFQSEKAAGSVSKST--QFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK   95 (126)
T ss_dssp             HHHHHHHHHHHHHSCCCHHH--HHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHhccCCCcHHH--HHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence            34667788877766554445  7799999999877666   999999999987 63  6788999999999999999999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHH
Q 014256          129 DCTEALNLDDRYIKAYSRRATAR  151 (428)
Q Consensus       129 ~~~~al~l~p~~~~a~~~lg~~~  151 (428)
                      .++.+++.+|+|..|......+.
T Consensus        96 ~~~~lL~~eP~n~QA~~Lk~~i~  118 (126)
T 1nzn_A           96 YVRGLLQTEPQNNQAKELERLID  118 (126)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHH
Confidence            99999999999988876665544

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=97.81  E-value=8.2e-05  Score=78.82  Aligned_cols=142  Identities=13%  Similarity=-0.006  Sum_probs=117.4

Q ss_pred             hHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHH-HHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 014256           57 PVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAI-DCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEAL  134 (428)
Q Consensus        57 Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai-~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al  134 (428)
                      ....|++++...|.++..  |...+..+...|+.++|+ ..|.+|+...|. ..+|...+......|+++.|...|++++
T Consensus       328 v~~~Ye~aL~~~p~~~~l--W~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l  405 (679)
T 4e6h_A          328 MTYVYMQAAQHVCFAPEI--WFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCI  405 (679)
T ss_dssp             HHHHHHHHHHHTTTCHHH--HHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHH--HHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            457899999999998777  889999999999999997 999999999998 8889999999999999999999999999


Q ss_pred             hcC-----------CC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCcHHHH-----------HH
Q 014256          135 NLD-----------DR-----------YIKAYSRRATARKELGKLKESIEDSEFALRL-EPQNQEIK-----------KQ  180 (428)
Q Consensus       135 ~l~-----------p~-----------~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l-~P~~~~~~-----------~~  180 (428)
                      ..-           |.           ...+|...+....+.|..+.|...|.+|++. .+....+.           ++
T Consensus       406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d  485 (679)
T 4e6h_A          406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKD  485 (679)
T ss_dssp             HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSC
T ss_pred             HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCC
Confidence            752           43           4567888898888999999999999999987 32222221           12


Q ss_pred             HHHHHHHHHHHHHhchhhhH
Q 014256          181 LAEVKSLYEKEVFQKASKTL  200 (428)
Q Consensus       181 l~~a~~~~~~a~~~~~~~~~  200 (428)
                      .+.|...|+.++..-|..+.
T Consensus       486 ~e~Ar~ife~~Lk~~p~~~~  505 (679)
T 4e6h_A          486 TKTACKVLELGLKYFATDGE  505 (679)
T ss_dssp             CHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHCCCchH
Confidence            56888888988887765543

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.74  E-value=5.9e-05  Score=70.76  Aligned_cols=90  Identities=11%  Similarity=-0.037  Sum_probs=79.5

Q ss_pred             CCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHh-----cCHHHHHHHHHHHHccCCc--HHHHHHHHHHHHH-hcC
Q 014256           51 YSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQ-----KKFKEAIDCYSRSIALSPT--AVAYANRAMAYLK-LRR  122 (428)
Q Consensus        51 ~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~-----g~~~~Ai~~y~~al~~~p~--~~~~~nla~~~~~-~~~  122 (428)
                      .+....|...++++++++|+.....++.-+|..|.+.     |+.++|..+|+++++++|+  ...++..|..+.. +|+
T Consensus       176 l~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd  255 (301)
T 3u64_A          176 PDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN  255 (301)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred             HHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence            3445678999999999999976655688999999994     9999999999999999995  7888899999988 499


Q ss_pred             HHHHHHHHHHHHhcCCCC
Q 014256          123 FQEAEDDCTEALNLDDRY  140 (428)
Q Consensus       123 ~~eA~~~~~~al~l~p~~  140 (428)
                      +++|...+++++..+|..
T Consensus       256 ~~~a~~~L~kAL~a~p~~  273 (301)
T 3u64_A          256 RAGFDEALDRALAIDPES  273 (301)
T ss_dssp             HHHHHHHHHHHHHCCGGG
T ss_pred             HHHHHHHHHHHHcCCCCC
Confidence            999999999999998873

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.64  E-value=0.00067  Score=55.77  Aligned_cols=78  Identities=12%  Similarity=0.010  Sum_probs=62.1

Q ss_pred             CcHHHHHHHHHHHHHhcC---HHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHH
Q 014256          105 PTAVAYANRAMAYLKLRR---FQEAEDDCTEALNLDDR-YIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQ  180 (428)
Q Consensus       105 p~~~~~~nla~~~~~~~~---~~eA~~~~~~al~l~p~-~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~  180 (428)
                      |.+.+-+++|.++.+...   ..+++..++..++.+|. ....+|.+|..++++|+|++|..+.+.+|+++|+|.++...
T Consensus        38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~L  117 (134)
T 3o48_A           38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL  117 (134)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred             CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence            447788888888888764   45788888888888874 46788889999999999999999999999999998887644


Q ss_pred             HH
Q 014256          181 LA  182 (428)
Q Consensus       181 l~  182 (428)
                      ..
T Consensus       118 k~  119 (134)
T 3o48_A          118 KS  119 (134)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.60  E-value=0.0012  Score=54.93  Aligned_cols=78  Identities=12%  Similarity=0.011  Sum_probs=65.9

Q ss_pred             CCcHHHHHHHHHHHHHhcC---HHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHH
Q 014256          104 SPTAVAYANRAMAYLKLRR---FQEAEDDCTEALNLDDR-YIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKK  179 (428)
Q Consensus       104 ~p~~~~~~nla~~~~~~~~---~~eA~~~~~~al~l~p~-~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~  179 (428)
                      .|...+.+++|.++.+...   -.+++..++..+..+|. .-..+|.+|..++++|+|.+|..+.+.+|+++|+|.++..
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~  115 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA  115 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence            3558888899999888764   45788899999988884 5678999999999999999999999999999999988764


Q ss_pred             HH
Q 014256          180 QL  181 (428)
Q Consensus       180 ~l  181 (428)
                      ..
T Consensus       116 Lk  117 (144)
T 1y8m_A          116 LK  117 (144)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.34  E-value=0.0023  Score=52.62  Aligned_cols=82  Identities=7%  Similarity=0.018  Sum_probs=69.1

Q ss_pred             CchHHHHHHHHHHHHHhcC---HHHHHHHHHHHHccCCc--HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHH
Q 014256           71 TPDATSEKELGNECFKQKK---FKEAIDCYSRSIALSPT--AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYS  145 (428)
Q Consensus        71 ~~~a~~~~~lg~~~~~~g~---~~~Ai~~y~~al~~~p~--~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~  145 (428)
                      .+.....+++|+++.+..+   ...+|..+...+..+|.  -..++.+|..++++|+|+.|..+++.+++..|+|..|..
T Consensus        37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~  116 (134)
T 3o48_A           37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA  116 (134)
T ss_dssp             GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred             CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence            3345558899999998764   56799999999998885  778999999999999999999999999999999988876


Q ss_pred             HHHHHHH
Q 014256          146 RRATARK  152 (428)
Q Consensus       146 ~lg~~~~  152 (428)
                      ....+..
T Consensus       117 Lk~~Ie~  123 (134)
T 3o48_A          117 LKSMVED  123 (134)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6655443

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=97.33  E-value=0.0032  Score=52.85  Aligned_cols=108  Identities=18%  Similarity=0.043  Sum_probs=91.6

Q ss_pred             cCCCCchHHHHHHHHHHHHHhcCH------HHHHHHHHHHHccCCc---------HHHHHHHHHHHHHhcCHHHHHHHHH
Q 014256           67 NEESTPDATSEKELGNECFKQKKF------KEAIDCYSRSIALSPT---------AVAYANRAMAYLKLRRFQEAEDDCT  131 (428)
Q Consensus        67 ~~p~~~~a~~~~~lg~~~~~~g~~------~~Ai~~y~~al~~~p~---------~~~~~nla~~~~~~~~~~eA~~~~~  131 (428)
                      ..|++++.  |......+.+.|+.      ++-++.|++|+..-|-         ...|.+.|.. ...++.++|.+.|.
T Consensus         8 ~~p~~yd~--W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~   84 (161)
T 4h7y_A            8 MMANNPED--WLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQ   84 (161)
T ss_dssp             --CCSHHH--HHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHH
T ss_pred             eCCCCHHH--HHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHH
Confidence            46777777  77888888888998      8899999999987653         4567777755 67799999999999


Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH
Q 014256          132 EALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI  177 (428)
Q Consensus       132 ~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~  177 (428)
                      .|+.+....+++|...|.-..+.|+...|...+.+++.+.|...+.
T Consensus        85 ~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~  130 (161)
T 4h7y_A           85 MARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM  130 (161)
T ss_dssp             HHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence            9999988899999999999999999999999999999999987654

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.22  E-value=0.0059  Score=50.79  Aligned_cols=80  Identities=6%  Similarity=0.005  Sum_probs=67.8

Q ss_pred             chHHHHHHHHHHHHHhcC---HHHHHHHHHHHHccCCc--HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHH
Q 014256           72 PDATSEKELGNECFKQKK---FKEAIDCYSRSIALSPT--AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSR  146 (428)
Q Consensus        72 ~~a~~~~~lg~~~~~~g~---~~~Ai~~y~~al~~~p~--~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~  146 (428)
                      ......+++|+++.+..+   ..+++.+++..+...|.  -...+.+|..++++|+|.+|..+++.+++.+|+|..+...
T Consensus        37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~L  116 (144)
T 1y8m_A           37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL  116 (144)
T ss_dssp             SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHH
Confidence            345558899999999764   55899999999998885  7788999999999999999999999999999999887665


Q ss_pred             HHHHH
Q 014256          147 RATAR  151 (428)
Q Consensus       147 lg~~~  151 (428)
                      ...+.
T Consensus       117 k~~Ie  121 (144)
T 1y8m_A          117 KSMVE  121 (144)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55443

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.00  E-value=0.0044  Score=52.95  Aligned_cols=90  Identities=16%  Similarity=0.031  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHccC---Cc-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC---------
Q 014256           77 EKELGNECFKQKKFKEAIDCYSRSIALS---PT-------AVAYANRAMAYLKLRRFQEAEDDCTEALNLD---------  137 (428)
Q Consensus        77 ~~~lg~~~~~~g~~~~Ai~~y~~al~~~---p~-------~~~~~nla~~~~~~~~~~eA~~~~~~al~l~---------  137 (428)
                      +.+-...++..|.|+.|+-.+..++.+.   |+       ..++..+|.+++..++|..|...|.+|+.+.         
T Consensus        23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~  102 (167)
T 3ffl_A           23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV  102 (167)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            4445555556666666666655544432   21       2345556666666666666666666654321         


Q ss_pred             ----------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 014256          138 ----------------DRYIKAYSRRATARKELGKLKESIEDSEF  166 (428)
Q Consensus       138 ----------------p~~~~a~~~lg~~~~~lg~~~eA~~~~~~  166 (428)
                                      +.+....|+.+.|+..+|++++|+..++.
T Consensus       103 ~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~  147 (167)
T 3ffl_A          103 RPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDG  147 (167)
T ss_dssp             --------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             cccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence                            22347889999999999999999998765

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=96.97  E-value=0.01  Score=60.38  Aligned_cols=118  Identities=9%  Similarity=-0.113  Sum_probs=83.3

Q ss_pred             chHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHH-------------------
Q 014256           56 DPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAM-------------------  115 (428)
Q Consensus        56 ~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~-------------------  115 (428)
                      .....|++++...|.....  |...+..+...|+.+.|...|.+|+.. |. ...|...+.                   
T Consensus       197 Rv~~~ye~al~~~p~~~~l--W~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~  273 (493)
T 2uy1_A          197 RMHFIHNYILDSFYYAEEV--YFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGE  273 (493)
T ss_dssp             HHHHHHHHHHHHTTTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC---
T ss_pred             HHHHHHHHHHHcCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhc
Confidence            3567999999999887665  889999999999999999999999999 87 333332222                   


Q ss_pred             ---------------------HHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCC
Q 014256          116 ---------------------AYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG-KLKESIEDSEFALRLEPQ  173 (428)
Q Consensus       116 ---------------------~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg-~~~eA~~~~~~al~l~P~  173 (428)
                                           .....+..+.|...|.+| ...+.....|...|......| +.+.|...|+.+++..|+
T Consensus       274 ~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~  352 (493)
T 2uy1_A          274 AESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD  352 (493)
T ss_dssp             -------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT
T ss_pred             cchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC
Confidence                                 222355677777777777 333334556666666555555 477788888888877777


Q ss_pred             cHHH
Q 014256          174 NQEI  177 (428)
Q Consensus       174 ~~~~  177 (428)
                      .+..
T Consensus       353 ~~~~  356 (493)
T 2uy1_A          353 STLL  356 (493)
T ss_dssp             CHHH
T ss_pred             CHHH
Confidence            6654

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=96.88  E-value=0.019  Score=58.40  Aligned_cols=141  Identities=12%  Similarity=0.110  Sum_probs=99.0

Q ss_pred             cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHh---------cCHHHHHHHHHHHHcc--CCcHHHHHHHHHHHH
Q 014256           50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQ---------KKFKEAIDCYSRSIAL--SPTAVAYANRAMAYL  118 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~---------g~~~~Ai~~y~~al~~--~p~~~~~~nla~~~~  118 (428)
                      +.|++++|+..|++.....- .+....|..+-.+|...         +..+.|...|.+....  .|+..+|+.+-.+|.
T Consensus        38 k~G~~~~A~~lf~~M~~~Gv-~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~  116 (501)
T 4g26_A           38 KKGDVLEALRLYDEARRNGV-QLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAV  116 (501)
T ss_dssp             TSCCHHHHHHHHHHHHHHTC-CCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred             hCCCHHHHHHHHHHHHHcCC-CCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence            77999999999988876531 12233355555555443         3478888888887664  467888888888888


Q ss_pred             HhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCcHHH---------HHHHHHHHH
Q 014256          119 KLRRFQEAEDDCTEALNLD-DRYIKAYSRRATARKELGKLKESIEDSEFALR--LEPQNQEI---------KKQLAEVKS  186 (428)
Q Consensus       119 ~~~~~~eA~~~~~~al~l~-p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~--l~P~~~~~---------~~~l~~a~~  186 (428)
                      +.|++++|...+.+..... .-+...|..+-.++...|++++|...|.....  +.|+....         .+++++|.+
T Consensus       117 ~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~  196 (501)
T 4g26_A          117 AKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYK  196 (501)
T ss_dssp             HHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHH
Confidence            9999999999888877653 22566777777888888999999988888775  34554332         345666777


Q ss_pred             HHHHH
Q 014256          187 LYEKE  191 (428)
Q Consensus       187 ~~~~a  191 (428)
                      ++++-
T Consensus       197 ll~~M  201 (501)
T 4g26_A          197 TLQRL  201 (501)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66653

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=96.62  E-value=0.03  Score=57.01  Aligned_cols=123  Identities=6%  Similarity=-0.000  Sum_probs=99.6

Q ss_pred             CCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHcc--CCcHHHHHHHHHHHHHhcCHHHHHH
Q 014256           51 YSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIAL--SPTAVAYANRAMAYLKLRRFQEAED  128 (428)
Q Consensus        51 ~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~--~p~~~~~~nla~~~~~~~~~~eA~~  128 (428)
                      .+..+.|...|.+.....- .+....+..+-..|.+.|++++|...|.+....  .|+...|..+-.+|.+.|++++|.+
T Consensus        83 ~~~l~~A~~lf~~M~~~G~-~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~  161 (501)
T 4g26_A           83 NPGLSRGFDIFKQMIVDKV-VPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYE  161 (501)
T ss_dssp             CHHHHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             cchHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHH
Confidence            3456778889988766531 224455788999999999999999999998765  4778889999999999999999999


Q ss_pred             HHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCc
Q 014256          129 DCTEALNLDD-RYIKAYSRRATARKELGKLKESIEDSEFALR--LEPQN  174 (428)
Q Consensus       129 ~~~~al~l~p-~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~--l~P~~  174 (428)
                      .+.+.....- -+...|..+-.++.+.|++++|...|++.-.  ..|+.
T Consensus       162 l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~  210 (501)
T 4g26_A          162 VDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSK  210 (501)
T ss_dssp             HHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCH
T ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCH
Confidence            9999886542 3567788888999999999999999998765  34543

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=96.59  E-value=0.0013  Score=56.36  Aligned_cols=108  Identities=13%  Similarity=0.018  Sum_probs=77.8

Q ss_pred             cCCCccccCCCCcchHHHHHhhhhcCCCCc-------hHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCC---c------
Q 014256           43 KPSPSGNSYSRNYDPVSHISSSLMNEESTP-------DATSEKELGNECFKQKKFKEAIDCYSRSIALSP---T------  106 (428)
Q Consensus        43 ~~~~~~y~~g~~~~Ai~~~~~al~~~p~~~-------~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p---~------  106 (428)
                      ..+...+..+.|+.|+.....++....++.       .+..+..+|+.+|..|+|..|...|.+++....   .      
T Consensus        25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~  104 (167)
T 3ffl_A           25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRP  104 (167)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence            444455678899999988888666532222       234577899999999999999999999876421   1      


Q ss_pred             -----------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 014256          107 -----------------AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATAR  151 (428)
Q Consensus       107 -----------------~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~  151 (428)
                                       ..+.+.+|.||.+++++++|+..++.. -..-..++....+|..|
T Consensus       105 ~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I-p~k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A          105 STGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI-PSRQRTPKINMLLANLY  165 (167)
T ss_dssp             ------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS-CGGGCCHHHHHHHHHHC
T ss_pred             cccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC-CchhcCHHHHHHHHHHh
Confidence                             257788999999999999999986642 12224566666666554

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=96.37  E-value=0.011  Score=62.80  Aligned_cols=114  Identities=6%  Similarity=-0.054  Sum_probs=81.4

Q ss_pred             CCC-CcchHHHHHhhhhcCCCCchHHHHHHHHHHH--HH-hcCHHHHHHHHHHHHcc--------CCc-----------H
Q 014256           51 YSR-NYDPVSHISSSLMNEESTPDATSEKELGNEC--FK-QKKFKEAIDCYSRSIAL--------SPT-----------A  107 (428)
Q Consensus        51 ~g~-~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~--~~-~g~~~~Ai~~y~~al~~--------~p~-----------~  107 (428)
                      .++ ++.|+..+++....+|....   ++..+.+.  .. ..+--+|+....++++.        .+.           .
T Consensus       261 t~~~~~~a~~~le~L~~~~p~~~~---~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~  337 (754)
T 4gns_B          261 TPSLVDFTIDYLKGLTKKDPIHDI---YYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMS  337 (754)
T ss_dssp             CGGGHHHHHHHHHHHHHHCGGGHH---HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhhCCchhH---HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcch
Confidence            344 46689999998888875432   22222221  11 23445677777776631        111           2


Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 014256          108 VAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFA  167 (428)
Q Consensus       108 ~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a  167 (428)
                      ....-.+..++..|+|+-|+...++|+.+.|.....|+.|+.+|..+|+|+.|+-.++.+
T Consensus       338 ~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          338 DLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            234445777788999999999999999999999999999999999999999999776664

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=96.02  E-value=0.11  Score=52.61  Aligned_cols=115  Identities=4%  Similarity=-0.130  Sum_probs=91.2

Q ss_pred             cCCCCcchHHHHHhhhhcCCCCchHHH--------------------------------------HHHHHHHHHHhcCHH
Q 014256           50 SYSRNYDPVSHISSSLMNEESTPDATS--------------------------------------EKELGNECFKQKKFK   91 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~--------------------------------------~~~lg~~~~~~g~~~   91 (428)
                      ..|+.+.|...|++++.. |.......                                      |...+..+.+.|+.+
T Consensus       225 ~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~  303 (493)
T 2uy1_A          225 GIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLE  303 (493)
T ss_dssp             HTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHH
T ss_pred             HcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHH
Confidence            678999999999999999 87643211                                      222333344577899


Q ss_pred             HHHHHHHHHHccCCc--HHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 014256           92 EAIDCYSRSIALSPT--AVAYANRAMAYLKLR-RFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFA  167 (428)
Q Consensus        92 ~Ai~~y~~al~~~p~--~~~~~nla~~~~~~~-~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a  167 (428)
                      .|...|.++ . .|.  ...|...|..-...+ +++.|...|+.++...|+.+..+...+.....+|+.+.|...|+++
T Consensus       304 ~AR~i~~~A-~-~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~  380 (493)
T 2uy1_A          304 LFRKLFIEL-G-NEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL  380 (493)
T ss_dssp             HHHHHHHHH-T-TSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred             HHHHHHHHh-h-CCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            999999999 4 343  667777787777666 6999999999999999999988888888888999999999999987

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=95.39  E-value=0.29  Score=41.81  Aligned_cols=122  Identities=11%  Similarity=0.024  Sum_probs=86.9

Q ss_pred             ccccCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCcHHHHHHHHHHHHHhcCHHHH
Q 014256           47 SGNSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEA  126 (428)
Q Consensus        47 ~~y~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~~~~~~nla~~~~~~~~~~eA  126 (428)
                      .+++-.+|+-++-.-.-.+...|   +-  ...++..++-.|+|..|+-++..    .......+.-+.||.++++|..|
T Consensus        11 Ks~kY~dYdt~~fLsa~L~~~~~---eY--~lL~~I~LyyngEY~R~Lf~L~~----lNT~Ts~YYk~LCy~klKdYkkA   81 (242)
T 3kae_A           11 KSIRYRDYETAIFLAACLLPCKP---EY--RMLMSIVLYLNGEYTRALFHLHK----LNTCTSKYYESLCYKKKKDYKKA   81 (242)
T ss_dssp             HHHHTTCHHHHHHHHHHHC-------CT--HHHHHHHHHHTTCHHHHHHHHHT----CCBHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHhhcccccHHHHHHHHHccCCh---HH--HhhhhhhhhhcchHhHHHHHHHh----cchHHHHHHHHHHHHHHHHHHHH
Confidence            34455666666544333333333   22  33678899999999999877532    22266667789999999999999


Q ss_pred             HHHHHHHH--hc---------------CCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH
Q 014256          127 EDDCTEAL--NL---------------DDRYIK-AYSRRATARKELGKLKESIEDSEFALRLEPQNQEI  177 (428)
Q Consensus       127 ~~~~~~al--~l---------------~p~~~~-a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~  177 (428)
                      +...+..+  .+               ||.+-. .+..+|..+...|..++|+.+|.......|-.+.+
T Consensus        82 ~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~v  150 (242)
T 3kae_A           82 IKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPV  150 (242)
T ss_dssp             HHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHH
T ss_pred             HHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchH
Confidence            99999998  22               234444 45567999999999999999999999999876554

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=94.95  E-value=0.28  Score=47.94  Aligned_cols=91  Identities=11%  Similarity=-0.008  Sum_probs=73.6

Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHccCCc---H--------------------HHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 014256           79 ELGNECFKQKKFKEAIDCYSRSIALSPT---A--------------------VAYANRAMAYLKLRRFQEAEDDCTEALN  135 (428)
Q Consensus        79 ~lg~~~~~~g~~~~Ai~~y~~al~~~p~---~--------------------~~~~nla~~~~~~~~~~eA~~~~~~al~  135 (428)
                      ..|......|+.+.|+..+.+++.+...   +                    .+...++.+++..|++.+|+..+..++.
T Consensus       120 ~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~  199 (388)
T 2ff4_A          120 TAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTF  199 (388)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            3444445568888888888888887421   0                    1223467788899999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 014256          136 LDDRYIKAYSRRATARKELGKLKESIEDSEFALR  169 (428)
Q Consensus       136 l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~  169 (428)
                      .+|-+-.+|..+..++...|+..+|+..|+++-+
T Consensus       200 ~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          200 EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999888754

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=94.42  E-value=0.36  Score=40.44  Aligned_cols=100  Identities=12%  Similarity=0.001  Sum_probs=76.2

Q ss_pred             cchHHHHHhhhhcCCCCc------hHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHH
Q 014256           55 YDPVSHISSSLMNEESTP------DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE  127 (428)
Q Consensus        55 ~~Ai~~~~~al~~~p~~~------~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~  127 (428)
                      +.-++.|++++..-|...      .+..|...+.. ...++.++|.+.|+.++.++.. +.+|...|..-..+|+...|.
T Consensus        36 ~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kAR  114 (161)
T 4h7y_A           36 NKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSK  114 (161)
T ss_dssp             HHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHH
Confidence            677789999988776532      13335555543 5669999999999999998555 999999999999999999999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 014256          128 DDCTEALNLDDRYIKAYSRRATARKELGK  156 (428)
Q Consensus       128 ~~~~~al~l~p~~~~a~~~lg~~~~~lg~  156 (428)
                      ..+.+|+.+.|..... ...|..-...|+
T Consensus       115 kILg~AiG~~~k~~~~-le~a~~nl~~~~  142 (161)
T 4h7y_A          115 QLLQKAVERGAVPLEM-LEIALRNLNLQK  142 (161)
T ss_dssp             HHHHHHHHTTCBCHHH-HHHHHHHHHTTC
T ss_pred             HHHHHHhccCCCcHHH-HHHHHHhhhcCC
Confidence            9999999999886543 334444444443

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=94.21  E-value=0.17  Score=53.79  Aligned_cols=57  Identities=14%  Similarity=0.075  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 014256           77 EKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEA  133 (428)
Q Consensus        77 ~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~a  133 (428)
                      +...+..+...|+|+-|+.+..+|+...|. ...|+.++.||..+|+|+.|+-.+..+
T Consensus       340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          340 LNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            556678888899999999999999999999 999999999999999999999877766

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.67  E-value=0.16  Score=50.38  Aligned_cols=96  Identities=8%  Similarity=-0.095  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHccCCc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC--CCH----HHHHH
Q 014256           77 EKELGNECFKQKKFKEAIDCYSRSIALSPT----AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD--RYI----KAYSR  146 (428)
Q Consensus        77 ~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~----~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p--~~~----~a~~~  146 (428)
                      +..+|..|+..|+++.|+++|.++......    ...+.....+++..++|..+...+.++..+-.  .++    .....
T Consensus       134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~  213 (429)
T 4b4t_R          134 WINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTY  213 (429)
T ss_dssp             CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHH
Confidence            679999999999999999999998876432    67888888999999999999999999865522  222    33445


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCC
Q 014256          147 RATARKELGKLKESIEDSEFALRLEP  172 (428)
Q Consensus       147 lg~~~~~lg~~~eA~~~~~~al~l~P  172 (428)
                      .|.++...++|..|...|..++.-..
T Consensus       214 ~gl~~l~~r~f~~Aa~~f~e~~~t~~  239 (429)
T 4b4t_R          214 YGIHCLAVRNFKEAAKLLVDSLATFT  239 (429)
T ss_dssp             HHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHhChHHHHHHHHHHHhccCC
Confidence            57777888999999999988876543

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=93.37  E-value=0.41  Score=48.41  Aligned_cols=77  Identities=12%  Similarity=-0.030  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 014256          109 AYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVK  185 (428)
Q Consensus       109 ~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~  185 (428)
                      ....+|........+..|..+|.+|+.+.|++..+|+.+|.+....|+.-+|+-+|.+++......+.+..++....
T Consensus       154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f  230 (497)
T 1ya0_A          154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL  230 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHH
Confidence            45567888888888999999999999999999999999999999999999999999999987776787777766543

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=93.21  E-value=0.49  Score=47.86  Aligned_cols=78  Identities=13%  Similarity=0.081  Sum_probs=71.8

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 014256           76 SEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKE  153 (428)
Q Consensus        76 ~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~  153 (428)
                      ++..+|....-...+..|..+|.+|+.+.|+ ...|+.+|.++...|+.-+|+-.|.+++.....++.+.-++...+..
T Consensus       154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~  232 (497)
T 1ya0_A          154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence            3567888888889999999999999999999 88999999999999999999999999999998899999999988765

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=93.15  E-value=0.45  Score=43.82  Aligned_cols=61  Identities=16%  Similarity=0.032  Sum_probs=33.7

Q ss_pred             HHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH
Q 014256          117 YLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI  177 (428)
Q Consensus       117 ~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~  177 (428)
                      +++.|.+++|+..+...++.+|.|......+-..+.-.|+|+.|..-++.+.+++|.....
T Consensus         7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~   67 (273)
T 1zbp_A            7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG   67 (273)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHH
Confidence            3444555555555555555555555555555555555555555555555555555554444

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=92.80  E-value=0.8  Score=44.81  Aligned_cols=91  Identities=12%  Similarity=-0.005  Sum_probs=73.8

Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHcc----CCc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC---CCC----HHHH
Q 014256           79 ELGNECFKQKKFKEAIDCYSRSIAL----SPT---AVAYANRAMAYLKLRRFQEAEDDCTEALNLD---DRY----IKAY  144 (428)
Q Consensus        79 ~lg~~~~~~g~~~~Ai~~y~~al~~----~p~---~~~~~nla~~~~~~~~~~eA~~~~~~al~l~---p~~----~~a~  144 (428)
                      .+|..|+..|+|.+|+.++.+.+.-    +..   ...+..-...|..++++..+...+++|....   +.+    +...
T Consensus       104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~  183 (394)
T 3txn_A          104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD  183 (394)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence            6899999999999999999988773    222   5678888999999999999999999987553   122    2345


Q ss_pred             HHHHHHHH-HcCCHHHHHHHHHHHHh
Q 014256          145 SRRATARK-ELGKLKESIEDSEFALR  169 (428)
Q Consensus       145 ~~lg~~~~-~lg~~~eA~~~~~~al~  169 (428)
                      ..-|..+. ..++|..|..+|-.++.
T Consensus       184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~  209 (394)
T 3txn_A          184 LQSGILHAADERDFKTAFSYFYEAFE  209 (394)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHhccCHHHHHHHHHHHHh
Confidence            55688888 89999999999998874

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=92.37  E-value=0.6  Score=40.27  Aligned_cols=101  Identities=12%  Similarity=-0.021  Sum_probs=63.7

Q ss_pred             cccCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCcHHHHHHHHHHHHHhcCHHHHH
Q 014256           48 GNSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAE  127 (428)
Q Consensus        48 ~y~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~~~~~~nla~~~~~~~~~~eA~  127 (428)
                      ++..|+++.|.+.....     +..  ..|+.+|......|+++-|..||.++-..       ..+...|...|+-+.-.
T Consensus        15 AL~lg~l~~A~e~a~~l-----~~~--~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~-------~~L~~Ly~~tg~~e~L~   80 (177)
T 3mkq_B           15 ALEYGNLDAALDEAKKL-----NDS--ITWERLIQEALAQGNASLAEMIYQTQHSF-------DKLSFLYLVTGDVNKLS   80 (177)
T ss_dssp             HHHTTCHHHHHHHHHHH-----CCH--HHHHHHHHHHHHTTCHHHHHHHHHHTTCH-------HHHHHHHHHHTCHHHHH
T ss_pred             HHhcCCHHHHHHHHHHh-----CCH--HHHHHHHHHHHHcCChHHHHHHHHHhCCH-------HHHHHHHHHhCCHHHHH
Confidence            34568888888776654     122  23889999999999999999999886432       23444556666655544


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 014256          128 DDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFA  167 (428)
Q Consensus       128 ~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a  167 (428)
                      ...+.|......     .....++..+|+++++++.|.+.
T Consensus        81 kla~iA~~~g~~-----n~af~~~l~lGdv~~~i~lL~~~  115 (177)
T 3mkq_B           81 KMQNIAQTREDF-----GSMLLNTFYNNSTKERSSIFAEG  115 (177)
T ss_dssp             HHHHHHHHTTCH-----HHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HHHHHHHHCccH-----HHHHHHHHHcCCHHHHHHHHHHC
Confidence            444444333221     12335566778888888777553

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=91.82  E-value=0.3  Score=49.33  Aligned_cols=136  Identities=10%  Similarity=-0.052  Sum_probs=65.5

Q ss_pred             cCCCCcchHHHHHhhhh------cCCCC---chHHHHHHHHHHHHHhcCHHHHHH----------HHHHH-----HccCC
Q 014256           50 SYSRNYDPVSHISSSLM------NEEST---PDATSEKELGNECFKQKKFKEAID----------CYSRS-----IALSP  105 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~------~~p~~---~~a~~~~~lg~~~~~~g~~~~Ai~----------~y~~a-----l~~~p  105 (428)
                      ..+++++|..+-..++.      .+...   ..+..|+..+.++...|+......          .+-.+     +..|+
T Consensus       148 d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~  227 (523)
T 4b4t_S          148 DSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDN  227 (523)
T ss_dssp             -------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSCSSS
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCc
Confidence            77888888877665541      11111   123345555666666666544221          11112     23344


Q ss_pred             c--HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC--CC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHH
Q 014256          106 T--AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD--RY---IKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK  178 (428)
Q Consensus       106 ~--~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p--~~---~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~  178 (428)
                      .  +.+++-+-..|+..+.|++|.....++.-...  .+   ...+|.+|.++...++|.+|..++..|++..|.+..+.
T Consensus       228 ~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a~  307 (523)
T 4b4t_S          228 ETKAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKSL  307 (523)
T ss_dssp             CHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSCS
T ss_pred             chhHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhhh
Confidence            4  77788889999999999999999999963221  11   45677889999999999999999999999988765443


Q ss_pred             HHHHHHH
Q 014256          179 KQLAEVK  185 (428)
Q Consensus       179 ~~l~~a~  185 (428)
                      +....+.
T Consensus       308 gfr~~a~  314 (523)
T 4b4t_S          308 GFLQQSN  314 (523)
T ss_dssp             HHHHHHH
T ss_pred             hHHHHHH
Confidence            3333433

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=90.90  E-value=0.76  Score=44.84  Aligned_cols=84  Identities=12%  Similarity=0.043  Sum_probs=66.1

Q ss_pred             CCCCcchHHHHHhhhhcCCCCc----------hH----------HHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHH
Q 014256           51 YSRNYDPVSHISSSLMNEESTP----------DA----------TSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVA  109 (428)
Q Consensus        51 ~g~~~~Ai~~~~~al~~~p~~~----------~a----------~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~  109 (428)
                      .|+.+.|...+.+++.+-....          ..          .+...++..+...|++.+|+..+..++..+|. ..+
T Consensus       128 ~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~  207 (388)
T 2ff4_A          128 AGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPL  207 (388)
T ss_dssp             TTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence            4566777778888877642210          00          11445677888899999999999999999998 889


Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHH
Q 014256          110 YANRAMAYLKLRRFQEAEDDCTEAL  134 (428)
Q Consensus       110 ~~nla~~~~~~~~~~eA~~~~~~al  134 (428)
                      |..+-.++...|+..+|+..|.++.
T Consensus       208 ~~~lm~al~~~Gr~~~Al~~y~~~r  232 (388)
T 2ff4_A          208 WTQLITAYYLSDRQSDALGAYRRVK  232 (388)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            9999999999999999999988774

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=90.84  E-value=0.33  Score=44.75  Aligned_cols=56  Identities=14%  Similarity=0.083  Sum_probs=38.7

Q ss_pred             ccCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc
Q 014256           49 NSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT  106 (428)
Q Consensus        49 y~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~  106 (428)
                      ++.|++++|+......++.+|.+.....  .+...++-.|+|+.|..-++-+.+++|.
T Consensus         8 l~~g~L~~al~~~~~~VR~~P~da~~R~--~LfqLLcv~G~w~RA~~QL~~~a~l~p~   63 (273)
T 1zbp_A            8 LSEGQLQQALELLIEAIKASPKDASLRS--SFIELLCIDGDFERADEQLMQSIKLFPE   63 (273)
T ss_dssp             TTTTCHHHHHHHHHHHHHTCTTCHHHHH--HHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred             HhCCCHHHHHHHHHHHHHhCCcCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence            3556677777777777777777666543  5666666677777777777777777776

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=90.35  E-value=3.7  Score=44.97  Aligned_cols=95  Identities=8%  Similarity=-0.075  Sum_probs=77.2

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHH-----ccCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Q 014256           76 SEKELGNECFKQKKFKEAIDCYSRSI-----ALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLD-DRYIKAYSRRAT  149 (428)
Q Consensus        76 ~~~~lg~~~~~~g~~~~Ai~~y~~al-----~~~p~~~~~~nla~~~~~~~~~~eA~~~~~~al~l~-p~~~~a~~~lg~  149 (428)
                      .+..+-+.|.+.|+.++|...|.+..     ...|+...|+.+-..|.+.|++++|.+.|.+..... .-|...|.-+-.
T Consensus       129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~  208 (1134)
T 3spa_A          129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQ  208 (1134)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence            37788899999999999999997643     346889999999999999999999999999987653 224566666767


Q ss_pred             HHHHcCCH-HHHHHHHHHHHhh
Q 014256          150 ARKELGKL-KESIEDSEFALRL  170 (428)
Q Consensus       150 ~~~~lg~~-~eA~~~~~~al~l  170 (428)
                      ++.+.|+. ++|...|++....
T Consensus       209 glcK~G~~~e~A~~Ll~EM~~k  230 (1134)
T 3spa_A          209 CMGRQDQDAGTIERCLEQMSQE  230 (1134)
T ss_dssp             HHHHHTCCHHHHHHHHHHHHHH
T ss_pred             HHHhCCCcHHHHHHHHHHHHHc
Confidence            78888884 7888888887764

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=90.11  E-value=8.3  Score=32.98  Aligned_cols=83  Identities=12%  Similarity=-0.003  Sum_probs=50.2

Q ss_pred             cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHc--c---------------CCc--HHHH
Q 014256           50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIA--L---------------SPT--AVAY  110 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~--~---------------~p~--~~~~  110 (428)
                      ..|+|..|+-.+.+.   +    .+.+.+-...||.+.++|..|+.+.+..+.  +               +|.  .-.+
T Consensus        45 yngEY~R~Lf~L~~l---N----T~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy  117 (242)
T 3kae_A           45 LNGEYTRALFHLHKL---N----TCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFE  117 (242)
T ss_dssp             HTTCHHHHHHHHHTC---C----BHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHH
T ss_pred             hcchHhHHHHHHHhc---c----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHH
Confidence            456666555554431   1    233355666777777777777777777772  2               122  2345


Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 014256          111 ANRAMAYLKLRRFQEAEDDCTEALNLDDR  139 (428)
Q Consensus       111 ~nla~~~~~~~~~~eA~~~~~~al~l~p~  139 (428)
                      ..+|....+.|+-++|+..+......+|-
T Consensus       118 ~l~a~lltq~g~r~EaI~y~~~Sf~~~~l  146 (242)
T 3kae_A          118 SLLGDLCTLSGYREEGIGHYVRSFGKSFL  146 (242)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHhcCHHHhhhHhhhhcCCccc
Confidence            55677777777777777777777665553

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=89.56  E-value=1.6  Score=46.05  Aligned_cols=77  Identities=17%  Similarity=0.133  Sum_probs=44.3

Q ss_pred             HHHhcCHHHHHHHHHHHHccCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcC
Q 014256           84 CFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNL--------DDRYIKAYSRRATARKELG  155 (428)
Q Consensus        84 ~~~~g~~~~Ai~~y~~al~~~p~~~~~~nla~~~~~~~~~~eA~~~~~~al~l--------~p~~~~a~~~lg~~~~~lg  155 (428)
                      ....|+++.|.++...    -.+...|.++|..+++.++++.|+.+|.++-..        ...+.+.+..++......|
T Consensus       662 ~l~~~~~~~A~~~~~~----~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~  737 (814)
T 3mkq_A          662 ALKVGQLTLARDLLTD----ESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTG  737 (814)
T ss_dssp             HHHHTCHHHHHHHHTT----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             hhhcCCHHHHHHHHHh----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcC
Confidence            3445666666555321    123677888888888888888888888775221        1334444445555555555


Q ss_pred             CHHHHHHHH
Q 014256          156 KLKESIEDS  164 (428)
Q Consensus       156 ~~~eA~~~~  164 (428)
                      ++..|...|
T Consensus       738 ~~~~A~~~~  746 (814)
T 3mkq_A          738 KFNLAFNAY  746 (814)
T ss_dssp             CHHHHHHHH
T ss_pred             chHHHHHHH
Confidence            555554443

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=88.08  E-value=7.5  Score=38.44  Aligned_cols=97  Identities=12%  Similarity=0.009  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHc----cCCc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHh---cCCCCH--
Q 014256           74 ATSEKELGNECFKQKKFKEAIDCYSRSIA----LSPT---AVAYANRAMAYLKLRRFQEAEDDCTEALN---LDDRYI--  141 (428)
Q Consensus        74 a~~~~~lg~~~~~~g~~~~Ai~~y~~al~----~~p~---~~~~~nla~~~~~~~~~~eA~~~~~~al~---l~p~~~--  141 (428)
                      +.....++..|...|+|.+|...+.....    ..+.   ..++......|+..++|..|...++++..   -.+..+  
T Consensus       137 arl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~l  216 (445)
T 4b4t_P          137 ARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESL  216 (445)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHH
Confidence            44456789999999999999999888653    2222   56788889999999999999999998742   223332  


Q ss_pred             --HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 014256          142 --KAYSRRATARKELGKLKESIEDSEFALRL  170 (428)
Q Consensus       142 --~a~~~lg~~~~~lg~~~eA~~~~~~al~l  170 (428)
                        ..+...|..+...++|.+|..+|..++.-
T Consensus       217 k~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          217 KLEYYNLLVKISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence              34666788899999999999999999864

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=86.11  E-value=3.6  Score=43.26  Aligned_cols=46  Identities=15%  Similarity=0.237  Sum_probs=32.9

Q ss_pred             cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHc
Q 014256           50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIA  102 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~  102 (428)
                      ..|+++.|.+.....     ..  ...|..+|..+.+.|+++.|+.||.++-.
T Consensus       664 ~~~~~~~A~~~~~~~-----~~--~~~W~~la~~al~~~~~~~A~~~y~~~~d  709 (814)
T 3mkq_A          664 KVGQLTLARDLLTDE-----SA--EMKWRALGDASLQRFNFKLAIEAFTNAHD  709 (814)
T ss_dssp             HHTCHHHHHHHHTTC-----CC--HHHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred             hcCCHHHHHHHHHhh-----Cc--HhHHHHHHHHHHHcCCHHHHHHHHHHccC
Confidence            455666665553321     12  23488999999999999999999998743

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=84.83  E-value=2.8  Score=46.88  Aligned_cols=26  Identities=23%  Similarity=0.247  Sum_probs=20.1

Q ss_pred             CHHHHHHHHHhccCC----HHHHHHHHhhc
Q 014256          307 SAYEFEVSWRGFAGD----HALQARLLKAI  332 (428)
Q Consensus       307 ~~~ef~~~w~~~~~~----~~~~~~yL~~i  332 (428)
                      +-|++.=.||-.++|    -...|+|+.++
T Consensus      1021 ~Yy~iLYs~ri~r~dyR~AA~vmYe~~~RL 1050 (1139)
T 4fhn_B         1021 CWYNILFSWRYKHQNYRDAAAIIYEKLSRY 1050 (1139)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred             CHHHHhHhhhhccCChHHHHHHHHHHHHHh
Confidence            578999999997765    45668888765

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=84.33  E-value=2.5  Score=41.23  Aligned_cols=93  Identities=8%  Similarity=-0.085  Sum_probs=69.9

Q ss_pred             CCCccc-cCCCCcchHHHHHhhhhcC----CCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccC----Cc----HHHH
Q 014256           44 PSPSGN-SYSRNYDPVSHISSSLMNE----ESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALS----PT----AVAY  110 (428)
Q Consensus        44 ~~~~~y-~~g~~~~Ai~~~~~al~~~----p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~----p~----~~~~  110 (428)
                      +++..| ..|+|.+|...+.+++..-    ........+......|...|++.++...|.++....    ++    +...
T Consensus       104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~  183 (394)
T 3txn_A          104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD  183 (394)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence            445555 8899999988888876642    222333446678889999999999999999986542    33    5556


Q ss_pred             HHHHHHHH-HhcCHHHHHHHHHHHHhc
Q 014256          111 ANRAMAYL-KLRRFQEAEDDCTEALNL  136 (428)
Q Consensus       111 ~nla~~~~-~~~~~~eA~~~~~~al~l  136 (428)
                      ..-|..++ ..++|..|..+|-.++.-
T Consensus       184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~  210 (394)
T 3txn_A          184 LQSGILHAADERDFKTAFSYFYEAFEG  210 (394)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence            66789999 899999999999998743

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=83.61  E-value=2.4  Score=46.39  Aligned_cols=90  Identities=9%  Similarity=-0.123  Sum_probs=71.7

Q ss_pred             CCCccc-cCCCCcchHHHHHhhhh-----cCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHcc--CCcHHHHHHHHH
Q 014256           44 PSPSGN-SYSRNYDPVSHISSSLM-----NEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIAL--SPTAVAYANRAM  115 (428)
Q Consensus        44 ~~~~~y-~~g~~~~Ai~~~~~al~-----~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~--~p~~~~~~nla~  115 (428)
                      .+-.+| +.|+.++|...|.....     ..|   ....|.-+-..|.+.|++++|.+.|.+..+.  .|+...|+.+-.
T Consensus       132 aLIdglcK~G~leeA~~Lf~eM~~m~~kG~~P---dvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~  208 (1134)
T 3spa_A          132 AFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL---TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQ  208 (1134)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTC---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCC---CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence            333345 88999999999976432     233   3455889999999999999999999998875  488889999989


Q ss_pred             HHHHhcC-HHHHHHHHHHHHhc
Q 014256          116 AYLKLRR-FQEAEDDCTEALNL  136 (428)
Q Consensus       116 ~~~~~~~-~~eA~~~~~~al~l  136 (428)
                      ++.+.|+ .++|...+++....
T Consensus       209 glcK~G~~~e~A~~Ll~EM~~k  230 (1134)
T 3spa_A          209 CMGRQDQDAGTIERCLEQMSQE  230 (1134)
T ss_dssp             HHHHHTCCHHHHHHHHHHHHHH
T ss_pred             HHHhCCCcHHHHHHHHHHHHHc
Confidence            9999998 47888888887654

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=82.97  E-value=2.5  Score=41.75  Aligned_cols=98  Identities=12%  Similarity=-0.011  Sum_probs=73.8

Q ss_pred             hhcCCCccc-cCCCCcchHHHHHhhhhcCCCC-chHHHHHHHHHHHHHhcCHHHHHHHHHHHHcc---CCc----HHHHH
Q 014256           41 AKKPSPSGN-SYSRNYDPVSHISSSLMNEEST-PDATSEKELGNECFKQKKFKEAIDCYSRSIAL---SPT----AVAYA  111 (428)
Q Consensus        41 a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~-~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~---~p~----~~~~~  111 (428)
                      +...+|..| ..|+++.|.+.|.++....... .....+.....+++..++|..+...+.++-.+   .++    ..+..
T Consensus       133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~  212 (429)
T 4b4t_R          133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT  212 (429)
T ss_dssp             CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence            334455556 8999999999999988764332 23444677778888899999999999998654   222    44566


Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 014256          112 NRAMAYLKLRRFQEAEDDCTEALNLDD  138 (428)
Q Consensus       112 nla~~~~~~~~~~eA~~~~~~al~l~p  138 (428)
                      ..|..++..++|..|...|-.++.-..
T Consensus       213 ~~gl~~l~~r~f~~Aa~~f~e~~~t~~  239 (429)
T 4b4t_R          213 YYGIHCLAVRNFKEAAKLLVDSLATFT  239 (429)
T ss_dssp             HHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHhChHHHHHHHHHHHhccCC
Confidence            678888999999999999988775543

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=80.35  E-value=11  Score=32.14  Aligned_cols=48  Identities=10%  Similarity=0.015  Sum_probs=40.5

Q ss_pred             HHHHhcCHHHHHHHHHHHHccCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 014256           83 ECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEAL  134 (428)
Q Consensus        83 ~~~~~g~~~~Ai~~y~~al~~~p~~~~~~nla~~~~~~~~~~eA~~~~~~al  134 (428)
                      .....|+++.|.+.....    .+...|..+|...+..|+++-|+.+|.++-
T Consensus        14 LAL~lg~l~~A~e~a~~l----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~   61 (177)
T 3mkq_B           14 LALEYGNLDAALDEAKKL----NDSITWERLIQEALAQGNASLAEMIYQTQH   61 (177)
T ss_dssp             HHHHTTCHHHHHHHHHHH----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred             HHHhcCCHHHHHHHHHHh----CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence            445789999999987654    237889999999999999999999999874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	428
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-14
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	5e-13
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-12
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	4e-12
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	7e-12
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	8e-08
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	9e-08
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	2e-14
d1a17a_	159	a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo	5e-14
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	2e-12
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	3e-12
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	1e-11
d2fbna1	153	a.118.8.1 (A:22-174) Putative 70 kda peptidylproly	6e-11
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	3e-10
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	1e-09
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	4e-09
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	9e-09
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	4e-04
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	7e-04
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	2e-08
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	5e-05
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	7e-05
d2hr2a1	156	a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C	3e-07
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	2e-06
d1tjca_	95	a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni	1e-04
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	2e-04
d1qqea_	290	a.118.8.1 (A:) Vesicular transport protein sec17 {	3e-04
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	3e-04
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	0.003
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	7e-04

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.4 bits (176), Expect = 2e-14
 Identities = 37/138 (26%), Positives = 57/138 (41%), Gaps = 3/138 (2%)

Query: 66  MNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQ 124
               S   A     L    ++Q     AID Y R+I L P    AY N A A  +     
Sbjct: 229 ALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVA 288

Query: 125 EAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEV 184
           EAED    AL L   +  + +  A  ++E G ++E++     AL + P+       LA V
Sbjct: 289 EAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASV 348

Query: 185 KSLYEKEVFQKASKTLEK 202
             L ++   Q+A    ++
Sbjct: 349 --LQQQGKLQEALMHYKE 364

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.8 bits (164), Expect = 5e-13
 Identities = 36/131 (27%), Positives = 57/131 (43%), Gaps = 3/131 (2%)

Query: 73  DATSEKELGNECFKQKKFKEAIDCYSRSIALS-PTAVAYANRAMAYLKLRRFQEAEDDCT 131
              +   LGN   + + F  A+  Y R+++LS   AV + N A  Y +      A D   
Sbjct: 202 FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYR 261

Query: 132 EALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKE 191
            A+ L   +  AY   A A KE G + E+ +    ALRL P + +    LA +    E+ 
Sbjct: 262 RAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANI--KREQG 319

Query: 192 VFQKASKTLEK 202
             ++A +   K
Sbjct: 320 NIEEAVRLYRK 330

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.5 bits (158), Expect = 3e-12
 Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 1/77 (1%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 138
           L N   +Q   +EA+  Y +++ + P  A A++N A    +  + QEA     EA+ +  
Sbjct: 311 LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 370

Query: 139 RYIKAYSRRATARKELG 155
            +  AYS      KE+ 
Sbjct: 371 TFADAYSNMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.1 bits (157), Expect = 4e-12
 Identities = 26/113 (23%), Positives = 49/113 (43%), Gaps = 1/113 (0%)

Query: 73  DATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYAN-RAMAYLKLRRFQEAEDDCT 131
              +   L N   ++    EA DCY+ ++ L PT     N  A    +    +EA     
Sbjct: 270 FPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYR 329

Query: 132 EALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEV 184
           +AL +   +  A+S  A+  ++ GKL+E++   + A+R+ P   +    +   
Sbjct: 330 KALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT 382

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.3 bits (155), Expect = 7e-12
 Identities = 12/73 (16%), Positives = 24/73 (32%), Gaps = 1/73 (1%)

Query: 79  ELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLD 137
           EL +  ++   F+ A     +     P         +  + + RR   +    T A+  +
Sbjct: 4   ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63

Query: 138 DRYIKAYSRRATA 150
               +AYS     
Sbjct: 64  PLLAEAYSNLGNV 76

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (122), Expect = 8e-08
 Identities = 28/139 (20%), Positives = 44/139 (31%), Gaps = 17/139 (12%)

Query: 73  DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCT 131
            A +   LG     Q +   AI  + +++ L P    AY N      + R F  A     
Sbjct: 168 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAY- 226

Query: 132 EALNLDDRYIK-------AYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEV 184
                  R +         +   A    E G +  +I+    A+ L+P   +    LA  
Sbjct: 227 ------LRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANA 280

Query: 185 KSLYEKEVFQKASKTLEKY 203
             L EK    +A       
Sbjct: 281 --LKEKGSVAEAEDCYNTA 297

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (122), Expect = 9e-08
 Identities = 13/73 (17%), Positives = 23/73 (31%)

Query: 112 NRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLE 171
             A    +   F+ AE  C +    +          ++   +  +L  S   S  A++  
Sbjct: 4   ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63

Query: 172 PQNQEIKKQLAEV 184
           P   E    L  V
Sbjct: 64  PLLAEAYSNLGNV 76

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 69.6 bits (169), Expect = 2e-14
 Identities = 45/187 (24%), Positives = 77/187 (41%), Gaps = 6/187 (3%)

Query: 71  TPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDD 129
           +P A   KE GN  F  +K+ EA  CY R+I  +P  AV Y NRA+ YLK+++ ++A  D
Sbjct: 1   SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALAD 60

Query: 130 CTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQ-----EIKKQLAEV 184
           C  AL LD + +KA+      + E+    E+I + + A  L  + +     +I   L   
Sbjct: 61  CRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA 120

Query: 185 KSLYEKEVFQKASKTLEKYGKSGMKVNGHEVRAVRNTIQKTGVAEIQDLTISKKTENKNL 244
           K      + ++      +      ++   E        Q+       D  I  +      
Sbjct: 121 KKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEA 180

Query: 245 RDESKTE 251
           + +    
Sbjct: 181 KHDKYMA 187

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.4 bits (163), Expect = 5e-14
 Identities = 38/137 (27%), Positives = 69/137 (50%), Gaps = 1/137 (0%)

Query: 68  EESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYL-KLRRFQEA 126
           + +   A   K   N+ FK K ++ AI  YS++I L+P+   Y         +   +  A
Sbjct: 4   DGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYA 63

Query: 127 EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKS 186
             D T A+ LD +YIK Y RRA +   LGK + ++ D E  ++++P +++ K +  E   
Sbjct: 64  LGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNK 123

Query: 187 LYEKEVFQKASKTLEKY 203
           + +++ F++A    E  
Sbjct: 124 IVKQKAFERAIAGDEHK 140

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 62.7 bits (151), Expect = 2e-12
 Identities = 37/161 (22%), Positives = 67/161 (41%), Gaps = 19/161 (11%)

Query: 65  LMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----------------AV 108
           +  +E    A   KE G   FK  K+ +A+  Y + ++                      
Sbjct: 6   MDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLA 65

Query: 109 AYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFAL 168
           A+ N AM YLKLR + +A + C +AL LD    K   RR  A+  + + + +  D E  L
Sbjct: 66  AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVL 125

Query: 169 RLEPQNQEIKKQLAEVKSL---YEKEVFQKASKTLEKYGKS 206
            + PQN+  + Q+   +     + +   +  +   +K+ + 
Sbjct: 126 EVNPQNKAARLQIFMCQKKAKEHNERDRRTYANMFKKFAEQ 166

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.9 bits (152), Expect = 3e-12
 Identities = 36/137 (26%), Positives = 53/137 (38%), Gaps = 3/137 (2%)

Query: 70  STPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDD 129
           S  +A S    G     +K +K A+D +S      P +    N    Y  L+   EAE  
Sbjct: 1   SLVEAISLWNEGVLAADKKDWKGALDAFSA--VQDPHSRICFNIGCMYTILKNMTEAEKA 58

Query: 130 CTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIK-KQLAEVKSLY 188
            T ++N D     AY +R     +  K   +I+D + AL     NQ I  K L     L+
Sbjct: 59  FTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLF 118

Query: 189 EKEVFQKASKTLEKYGK 205
             EV    +    K  +
Sbjct: 119 ACEVLYNIAFMYAKKEE 135

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.9 bits (144), Expect = 1e-11
 Identities = 29/126 (23%), Positives = 59/126 (46%), Gaps = 9/126 (7%)

Query: 74  ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTE 132
           A  EKELGN+ +K+K F  A+  Y ++  L PT      N+A  Y +   + +  + C +
Sbjct: 4   ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63

Query: 133 ALNLD-------DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVK 185
           A+ +         +  KAY+R   +  +  K K++I     +L       ++ K+  + +
Sbjct: 64  AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAE 122

Query: 186 SLYEKE 191
            + +++
Sbjct: 123 KILKEQ 128

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

 Score = 58.5 bits (140), Expect = 6e-11
 Identities = 34/138 (24%), Positives = 52/138 (37%), Gaps = 17/138 (12%)

Query: 65  LMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-----------------A 107
             +EE    A   KE GNE FK+ +  EAI  Y  ++                       
Sbjct: 8   YTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEI 67

Query: 108 VAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFA 167
               N A  Y K + + +A D  ++ L +D   +KA  +   A    G L+E+ E+   A
Sbjct: 68  SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKA 127

Query: 168 LRLEPQNQEIKKQLAEVK 185
             L P N +I+       
Sbjct: 128 ASLNPNNLDIRNSYELCV 145

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.4 bits (132), Expect = 3e-10
 Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 1/110 (0%)

Query: 78  KELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALN-L 136
           KE GN+        +A+ CYS +I L P      +   A    +   +   +       L
Sbjct: 7   KEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL 66

Query: 137 DDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKS 186
              + K YSR+A A + L + +E+    E  L+ E  N ++K+ L  +++
Sbjct: 67  KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 116

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.1 bits (131), Expect = 1e-09
 Identities = 34/135 (25%), Positives = 59/135 (43%), Gaps = 17/135 (12%)

Query: 74  ATSEKELGNECFKQKKFKEAIDCYSRS----------------IALSPT-AVAYANRAMA 116
           +   K +GN  FK + ++ AI  Y++                   L P       N    
Sbjct: 27  SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGAC 86

Query: 117 YLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE 176
            LK+  +Q A D C EAL +D    KA  RRA   + L +  +++ D + A  + P+++ 
Sbjct: 87  KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKA 146

Query: 177 IKKQLAEVKSLYEKE 191
           I+ +L +VK   + +
Sbjct: 147 IQAELLKVKQKIKAQ 161

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (126), Expect = 4e-09
 Identities = 42/164 (25%), Positives = 68/164 (41%), Gaps = 19/164 (11%)

Query: 65  LMNEESTPDATSEKELGNECFKQKKFKEAIDCYSR----------------SIALSPTAV 108
           + +EE    +T  KE G   FK+ K+K+A+  Y +                  A +    
Sbjct: 4   MNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLA 63

Query: 109 AYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFAL 168
           ++ N AM +LKL+ F  A + C +AL LD    K  SRR  A   +   + +  D +  L
Sbjct: 64  SHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVL 123

Query: 169 RLEPQNQEIKKQLAEVKSL---YEKEVFQKASKTLEKYGKSGMK 209
           +L P N+  K QLA  +           +  +   E+  +   K
Sbjct: 124 QLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLAEEENK 167

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.4 bits (129), Expect = 9e-09
 Identities = 16/128 (12%), Positives = 33/128 (25%), Gaps = 1/128 (0%)

Query: 79  ELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLD 137
           E G    ++     A+  +  ++   P    A+        +  +   A       L L 
Sbjct: 24  EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK 83

Query: 138 DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKEVFQKAS 197
                A    A +       +++ E     LR  P    +     E          ++  
Sbjct: 84  PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRIL 143

Query: 198 KTLEKYGK 205
            +L     
Sbjct: 144 GSLLSDSL 151

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (91), Expect = 4e-04
 Identities = 16/101 (15%), Positives = 35/101 (34%), Gaps = 5/101 (4%)

Query: 82  NECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY 140
                  + +EA+  Y R++ L P    +  N  ++ + L   +EA +   EALN+  + 
Sbjct: 214 ATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS 273

Query: 141 IKAYSRRATARKE----LGKLKESIEDSEFALRLEPQNQEI 177
                      +     L      +  S+     + ++   
Sbjct: 274 RGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLST 314

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 7e-04
 Identities = 21/108 (19%), Positives = 48/108 (44%), Gaps = 1/108 (0%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMA-YLKLRRFQEAEDDCTEALNLDD 138
           LG       ++ +A+DC++ ++++ P      N+  A      + +EA      AL L  
Sbjct: 178 LGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP 237

Query: 139 RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKS 186
            YI++      +   LG  +E++E    AL ++ +++  + +   +  
Sbjct: 238 GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSE 285

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 52.3 bits (125), Expect = 2e-08
 Identities = 15/103 (14%), Positives = 38/103 (36%), Gaps = 1/103 (0%)

Query: 81  GNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDR 139
                 + + ++A++    +I  SP  A   ++          F+ A++   +++ L   
Sbjct: 3   WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 62

Query: 140 YIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLA 182
           Y+   S+     K     K+  + +  A  L    +  K  ++
Sbjct: 63  YLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVS 105

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 42.3 bits (99), Expect = 5e-05
 Identities = 10/105 (9%), Positives = 25/105 (23%), Gaps = 2/105 (1%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSPTA-VAYANRAMAYLKLRRFQEAEDDCTEALNLD- 137
                     F+ A +   +SI L P      +         +  ++       A  L  
Sbjct: 36  FIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGE 95

Query: 138 DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLA 182
           +  +                ++  E +     L  +   +    +
Sbjct: 96  NEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLANDTS 140

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 41.9 bits (98), Expect = 7e-05
 Identities = 12/72 (16%), Positives = 25/72 (34%)

Query: 113 RAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEP 172
           +    L   + Q+A +   EA+    +     S         G  + + E    +++L P
Sbjct: 2   QWKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFP 61

Query: 173 QNQEIKKQLAEV 184
           +      QL  +
Sbjct: 62  EYLPGASQLRHL 73

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

 Score = 47.8 bits (112), Expect = 3e-07
 Identities = 23/146 (15%), Positives = 43/146 (29%), Gaps = 24/146 (16%)

Query: 69  ESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-------------AVAYANRAM 115
           +    A              ++ EA     R++ +S T             A  +A  A 
Sbjct: 4   KEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAE 63

Query: 116 AYLKLRRFQEA-----------EDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDS 164
           A   LR F EA                   +    +I A   RA A   LG+  E++ + 
Sbjct: 64  ALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEF 123

Query: 165 EFALRLEPQNQEIKKQLAEVKSLYEK 190
           +  + +  + +        +  +   
Sbjct: 124 KKVVEMIEERKGETPGKERMMEVAID 149

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (104), Expect = 2e-06
 Identities = 16/119 (13%), Positives = 36/119 (30%), Gaps = 6/119 (5%)

Query: 79  ELGNECFKQKKFKEAIDCYSRSIALSP----TAVAYANRAMAYLKLRRFQEAEDDCTEA- 133
            + NE    +   +    +    A       T   YA   +        ++      E  
Sbjct: 4   AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELL 63

Query: 134 -LNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKE 191
                +         A     L + +++++     L+ EPQN + K+    +    +K+
Sbjct: 64  PKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKKD 122

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (89), Expect = 1e-04
 Identities = 10/86 (11%), Positives = 23/86 (26%), Gaps = 8/86 (9%)

Query: 79  ELGNECFKQKKFKEAIDCYSRSIALSPTAVA--------YANRAMAYLKLRRFQEAEDDC 130
           ELG   + +  +        +++                    + A  +     +A    
Sbjct: 10  ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLT 69

Query: 131 TEALNLDDRYIKAYSRRATARKELGK 156
            + L LD  + +A          + K
Sbjct: 70  KKLLELDPEHQRANGNLKYFEYIMAK 95

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 41.1 bits (94), Expect = 2e-04
 Identities = 17/86 (19%), Positives = 25/86 (29%), Gaps = 5/86 (5%)

Query: 107 AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDR-----YIKAYSRRATARKELGKLKESI 161
           A   A RA   +      EAE     AL           I A S         G+L  S+
Sbjct: 12  AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSL 71

Query: 162 EDSEFALRLEPQNQEIKKQLAEVKSL 187
              +   ++  Q+      L  +   
Sbjct: 72  ALMQQTEQMARQHDVWHYALWSLIQQ 97

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.0 bits (92), Expect = 3e-04
 Identities = 21/123 (17%), Positives = 41/123 (33%), Gaps = 19/123 (15%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 138
             +      ++ EA D YS+ I  S    ++  +    +LK    Q A  D   A     
Sbjct: 164 CADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQ 223

Query: 139 RYIKAYSRRATAR--------------KELGKLKESIEDSEFALRLEPQN----QEIKKQ 180
                    A +R               +  +L E  ++ +  +RL+        +IK+ 
Sbjct: 224 EGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIKES 283

Query: 181 LAE 183
           + +
Sbjct: 284 IQQ 286

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (94), Expect = 3e-04
 Identities = 10/87 (11%), Positives = 27/87 (31%), Gaps = 1/87 (1%)

Query: 80  LGNECFKQKKFKEAIDCYSRSIALSP-TAVAYANRAMAYLKLRRFQEAEDDCTEALNLDD 138
           LG+    + +  +A   Y  +  L P     Y   A+                 ++ +  
Sbjct: 158 LGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKF 217

Query: 139 RYIKAYSRRATARKELGKLKESIEDSE 165
            +  A +    A  +  + ++ ++   
Sbjct: 218 PFPAASTNLQKALSKALESRDEVKTKW 244

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (86), Expect = 0.003
 Identities = 19/124 (15%), Positives = 30/124 (24%), Gaps = 2/124 (1%)

Query: 5   NRDQALDWDLSLNEKDKKMKHKASSKDNLVSSSLKSAKKPSPSGNSYSRNYDPVSHISSS 64
           +    +         +K+    A  K    S S          G+            S  
Sbjct: 116 DLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYY 175

Query: 65  LMNEESTPD-ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRR 122
               +  P       +L      +      I  Y RSIA+      A  N   A  K   
Sbjct: 176 RHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALE 235

Query: 123 FQEA 126
            ++ 
Sbjct: 236 SRDE 239

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 7e-04
 Identities = 15/85 (17%), Positives = 27/85 (31%), Gaps = 2/85 (2%)

Query: 100 SIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGK-L 157
            I  S      Y        +  R + A     +A+ L+      +  R    K L K L
Sbjct: 35  QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDL 94

Query: 158 KESIEDSEFALRLEPQNQEIKKQLA 182
            E +      +  +P+N ++     
Sbjct: 95  HEEMNYITAIIEEQPKNYQVWHHRR 119

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	428
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.77
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.77
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.74
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.72
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.71
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.69
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.67
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.66
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.65
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.65
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.65
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.64
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.64
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.64
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.62
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.62
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.6
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.58
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.57
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.56
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.56
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.54
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.53
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.52
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.5
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.49
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.43
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.41
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.39
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.37
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.37
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.27
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.25
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.24
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.19
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.18
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.16
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.14
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.13
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.11
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.98
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.93
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.87
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.83
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.77
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.76
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.75
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.56
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.49
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.41
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.35
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.24
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.98
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.77
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.38
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	96.87
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	84.83

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=4.9e-18  Score=138.25  Aligned_cols=111  Identities=32%  Similarity=0.529  Sum_probs=106.3

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 014256           75 TSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKE  153 (428)
Q Consensus        75 ~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~  153 (428)
                      ..++..|+.++..|+|++|+.+|+++|.++|+ +.+|.++|.+|+.+|+|++|+..|.+++.++|+++.+|+++|.++..
T Consensus         4 ~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~   83 (117)
T d1elwa_           4 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF   83 (117)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHH
Confidence            34789999999999999999999999999999 99999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 014256          154 LGKLKESIEDSEFALRLEPQNQEIKKQLAEVK  185 (428)
Q Consensus       154 lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~  185 (428)
                      +|++++|+..|+++++++|+++.+...+..+.
T Consensus        84 ~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~  115 (117)
T d1elwa_          84 LNRFEEAKRTYEEGLKHEANNPQLKEGLQNME  115 (117)
T ss_dssp             TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence            99999999999999999999999988777654

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.1e-18  Score=166.78  Aligned_cols=167  Identities=10%  Similarity=0.019  Sum_probs=152.9

Q ss_pred             ccChhhhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhc-CHHHHHHHHHHHHccCCc-HHHHH
Q 014256           35 SSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQK-KFKEAIDCYSRSIALSPT-AVAYA  111 (428)
Q Consensus        35 ~~~~~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g-~~~~Ai~~y~~al~~~p~-~~~~~  111 (428)
                      .+++.+++..+|..+ ..+.+++|+..|.+++.++|.+..+  |+.+|.++...| ++++|+.+|.+++.++|+ ..+|.
T Consensus        39 ~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a--~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~  116 (315)
T d2h6fa1          39 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTV--WHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWH  116 (315)
T ss_dssp             CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHH--HHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHH
Confidence            567888888888888 8889999999999999999999888  889999999987 599999999999999999 99999


Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHH------------
Q 014256          112 NRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKK------------  179 (428)
Q Consensus       112 nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~------------  179 (428)
                      ++|.++..+|++++|+..+.+++.++|++..+|+++|.++..+|++++|+..|+++++++|.+..++.            
T Consensus       117 ~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~  196 (315)
T d2h6fa1         117 HRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGY  196 (315)
T ss_dssp             HHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCS
T ss_pred             HHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999987643            


Q ss_pred             ----HHHHHHHHHHHHHHhchhhhHhhh
Q 014256          180 ----QLAEVKSLYEKEVFQKASKTLEKY  203 (428)
Q Consensus       180 ----~l~~a~~~~~~a~~~~~~~~~~~~  203 (428)
                          .+.+|+..+.+++..+|.+...+.
T Consensus       197 ~~~~~~~~ai~~~~~al~~~P~~~~~~~  224 (315)
T d2h6fa1         197 NDRAVLEREVQYTLEMIKLVPHNESAWN  224 (315)
T ss_dssp             CSHHHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred             chhhhhHHhHHHHHHHHHhCCCchHHHH
Confidence                346788888899999988776544

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=4.5e-17  Score=139.50  Aligned_cols=117  Identities=35%  Similarity=0.637  Sum_probs=109.6

Q ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 014256           73 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATAR  151 (428)
Q Consensus        73 ~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~  151 (428)
                      .+..++..|+.|++.|+|++|+.+|+++++++|+ ..+|+++|.||+.+|++++|+.+|.++++++|.++.+|+++|.++
T Consensus         9 ~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~   88 (159)
T d1a17a_           9 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN   88 (159)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHH
Confidence            3556889999999999999999999999999999 999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHH
Q 014256          152 KELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYE  189 (428)
Q Consensus       152 ~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~  189 (428)
                      ..+|++++|+..|++++.++|++..+...+..+...+.
T Consensus        89 ~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~  126 (159)
T d1a17a_          89 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVK  126 (159)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999877777655443

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.72  E-value=1.1e-16  Score=136.44  Aligned_cols=118  Identities=27%  Similarity=0.334  Sum_probs=107.4

Q ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-----------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 014256           73 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-----------------AVAYANRAMAYLKLRRFQEAEDDCTEALN  135 (428)
Q Consensus        73 ~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-----------------~~~~~nla~~~~~~~~~~eA~~~~~~al~  135 (428)
                      .+..++..|+.+++.|+|.+|+.+|++++...+.                 ..+|.|+|.||+++|+|++|+.+|.+++.
T Consensus        16 ~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~   95 (153)
T d2fbna1          16 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK   95 (153)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcccc
Confidence            4556889999999999999999999999986542                 14688999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHH
Q 014256          136 LDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEK  190 (428)
Q Consensus       136 l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~~  190 (428)
                      ++|.++++|+++|.++..+|++++|+.+|++++.++|++..+...+..+...+++
T Consensus        96 ~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~~  150 (153)
T d2fbna1          96 IDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKE  150 (153)
T ss_dssp             HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999998888887765543

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.71  E-value=2.9e-17  Score=144.91  Aligned_cols=103  Identities=36%  Similarity=0.548  Sum_probs=98.5

Q ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 014256           73 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATAR  151 (428)
Q Consensus        73 ~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~  151 (428)
                      .+..+++.|+.|++.|+|++|+.+|++++.++|. +.+|+++|.||+.+|+|++|+.+|++|+.++|+++.+|+++|.++
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~   82 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   82 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            4556889999999999999999999999999999 999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCcH
Q 014256          152 KELGKLKESIEDSEFALRLEPQNQ  175 (428)
Q Consensus       152 ~~lg~~~eA~~~~~~al~l~P~~~  175 (428)
                      ..+|+|++|+..|++++.++|++.
T Consensus        83 ~~l~~~~~A~~~~~~al~l~p~~~  106 (201)
T d2c2la1          83 LEMESYDEAIANLQRAYSLAKEQR  106 (201)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHCCCHHHHHHHHHHHHHhCcccH
Confidence            999999999999999999988544

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=3.7e-16  Score=135.52  Aligned_cols=119  Identities=31%  Similarity=0.406  Sum_probs=107.7

Q ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc----------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 014256           73 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----------------AVAYANRAMAYLKLRRFQEAEDDCTEALNL  136 (428)
Q Consensus        73 ~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~----------------~~~~~nla~~~~~~~~~~eA~~~~~~al~l  136 (428)
                      .+..+++.|+.+++.|+|++|+.+|+++|.+.|.                ..+|.|+|.||+++|+|++|+.+|+++|.+
T Consensus        12 ~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~   91 (170)
T d1p5qa1          12 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL   91 (170)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhc
Confidence            3555889999999999999999999999998663                256889999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHH
Q 014256          137 DDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYEKE  191 (428)
Q Consensus       137 ~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~~a  191 (428)
                      +|+++.+++++|.++..+|+|++|+.+|++++.++|+++.+...+..+...+.+-
T Consensus        92 ~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~  146 (170)
T d1p5qa1          92 DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQ  146 (170)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHH
T ss_pred             cccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999988877776655433

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.8e-16  Score=151.40  Aligned_cols=167  Identities=21%  Similarity=0.162  Sum_probs=138.0

Q ss_pred             cChhhhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHH
Q 014256           36 SSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANR  113 (428)
Q Consensus        36 ~~~~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nl  113 (428)
                      ++...++..++..+ ..|++++|+..|.+++..++.....  +..+|.++...|++++|+.+|+++++++|+ +.++.++
T Consensus       200 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  277 (388)
T d1w3ba_         200 PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVV--HGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNL  277 (388)
T ss_dssp             TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHH
T ss_pred             cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHH--HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            44445555666666 7888888888888888888776655  678899999999999999999999998888 8888889


Q ss_pred             HHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH----------HHHHHH
Q 014256          114 AMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI----------KKQLAE  183 (428)
Q Consensus       114 a~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~----------~~~l~~  183 (428)
                      |.++..+|++++|+..+..++...|.+..++..+|.++..+|++++|+..|+++++++|++..+          .+++++
T Consensus       278 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  357 (388)
T d1w3ba_         278 ANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQE  357 (388)
T ss_dssp             HHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHH
T ss_pred             HHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence            9999999999999999999999999998899999999999999999999999999999988776          345678


Q ss_pred             HHHHHHHHHHhchhhhHhhhc
Q 014256          184 VKSLYEKEVFQKASKTLEKYG  204 (428)
Q Consensus       184 a~~~~~~a~~~~~~~~~~~~~  204 (428)
                      |+..|++++.++|.++....+
T Consensus       358 A~~~~~~al~l~P~~~~a~~~  378 (388)
T d1w3ba_         358 ALMHYKEAIRISPTFADAYSN  378 (388)
T ss_dssp             HHHHHHHHHTTCTTCHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHH
Confidence            888888888888877664443

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.66  E-value=7.7e-16  Score=133.13  Aligned_cols=116  Identities=30%  Similarity=0.413  Sum_probs=104.6

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc----------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 014256           74 ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT----------------AVAYANRAMAYLKLRRFQEAEDDCTEALNLD  137 (428)
Q Consensus        74 a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~----------------~~~~~nla~~~~~~~~~~eA~~~~~~al~l~  137 (428)
                      +..++..|+.+++.|+|.+|+.+|.+++...+.                ..+|.|+|.||+++|+|++|+.+|++++.++
T Consensus        15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~   94 (168)
T d1kt1a1          15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD   94 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc
Confidence            455889999999999999999999999975321                3568899999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHH
Q 014256          138 DRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYE  189 (428)
Q Consensus       138 p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~  189 (428)
                      |.++.+++++|.++..+|+|++|+.+|.+++.++|++..+...+..+...+.
T Consensus        95 p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~  146 (168)
T d1kt1a1          95 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAK  146 (168)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999877776665544

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=6e-16  Score=146.26  Aligned_cols=164  Identities=12%  Similarity=0.056  Sum_probs=132.1

Q ss_pred             ccChhhhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHcc----------
Q 014256           35 SSSLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIAL----------  103 (428)
Q Consensus        35 ~~~~~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~----------  103 (428)
                      .++...++..+|.+| ..|++++|+..|.+++.++|.+..+  +..+|.+|...|++++|+.+|.+++..          
T Consensus        49 ~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~--~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  126 (323)
T d1fcha_          49 DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTA--LMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTP  126 (323)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC-
T ss_pred             CCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccc--cccccccccccccccccccchhhHHHhccchHHHHHh
Confidence            344555666666666 7888999999999999988887666  778888888888888877777665543          


Q ss_pred             ---------------------------------------CCc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCH
Q 014256          104 ---------------------------------------SPT---AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYI  141 (428)
Q Consensus       104 ---------------------------------------~p~---~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~  141 (428)
                                                             +|+   +.++.++|.++..+|++++|+..|++++..+|+++
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~  206 (323)
T d1fcha_         127 AEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDY  206 (323)
T ss_dssp             --------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             hhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccc
Confidence                                                   333   45677888999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH----------HHHHHHHHHHHHHHHHhchhhhH
Q 014256          142 KAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI----------KKQLAEVKSLYEKEVFQKASKTL  200 (428)
Q Consensus       142 ~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~----------~~~l~~a~~~~~~a~~~~~~~~~  200 (428)
                      .+|+++|.++..+|++++|+..|+++++++|+++.+          .+++++|+..|.+++.++|.+..
T Consensus       207 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~  275 (323)
T d1fcha_         207 LLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRG  275 (323)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC--
T ss_pred             cchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChh
Confidence            999999999999999999999999999999998876          45677888889999988876543

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=4.1e-16  Score=148.78  Aligned_cols=142  Identities=21%  Similarity=0.207  Sum_probs=132.1

Q ss_pred             hcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHH
Q 014256           42 KKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLK  119 (428)
Q Consensus        42 ~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~  119 (428)
                      ...+|..| ..|++++|+..|++++..+|++..+  +..+|.++...|++.+|+.+|..++...|. ...+..+|.++..
T Consensus       240 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  317 (388)
T d1w3ba_         240 HGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDA--YCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE  317 (388)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHH--HHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHH
Confidence            33445556 8899999999999999999998777  779999999999999999999999999998 8899999999999


Q ss_pred             hcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 014256          120 LRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVK  185 (428)
Q Consensus       120 ~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~  185 (428)
                      +|++++|+..|+++++++|+++.+++++|.++..+|++++|+..|+++++++|+++.++.++..+.
T Consensus       318 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~  383 (388)
T d1w3ba_         318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL  383 (388)
T ss_dssp             TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999887777654

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.65  E-value=1.6e-15  Score=131.03  Aligned_cols=113  Identities=29%  Similarity=0.458  Sum_probs=103.3

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHcc----------------CCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 014256           77 EKELGNECFKQKKFKEAIDCYSRSIAL----------------SPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDR  139 (428)
Q Consensus        77 ~~~lg~~~~~~g~~~~Ai~~y~~al~~----------------~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~  139 (428)
                      ++..|+.++..|+|.+|+..|++++..                +|. ..+|.|+|.||.++|+|++|+..|+++++++|+
T Consensus        30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~  109 (169)
T d1ihga1          30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS  109 (169)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhh
Confidence            678999999999999999999999864                233 567899999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHH
Q 014256          140 YIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLYE  189 (428)
Q Consensus       140 ~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~~  189 (428)
                      ++.+|+++|.++..+|++++|+.+|+++++++|++..+...+..+...+.
T Consensus       110 ~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~  159 (169)
T d1ihga1         110 NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIK  159 (169)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             hhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999888777765444

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=2e-15  Score=124.49  Aligned_cols=115  Identities=25%  Similarity=0.424  Sum_probs=102.0

Q ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCH-------HHH
Q 014256           73 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYI-------KAY  144 (428)
Q Consensus        73 ~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~-------~a~  144 (428)
                      .|..++++|+.++..|+|++|+.+|++++.++|+ +.++.++|.||..+|+|++|+.+|++++.++|.+.       .+|
T Consensus         3 ~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~   82 (128)
T d1elra_           3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY   82 (128)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            3556889999999999999999999999999999 99999999999999999999999999999998774       578


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Q 014256          145 SRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLY  188 (428)
Q Consensus       145 ~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~  188 (428)
                      +++|.++..++++++|+..|++++..+|+ ++....+.++.+.+
T Consensus        83 ~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~~~k~l  125 (128)
T d1elra_          83 ARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQAEKIL  125 (128)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHH
Confidence            88888999999999999999999999875 55666666655543

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=9.6e-16  Score=135.58  Aligned_cols=120  Identities=20%  Similarity=0.179  Sum_probs=107.0

Q ss_pred             cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHH
Q 014256           50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  128 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~  128 (428)
                      ..|+++.|+..|.++   .+.+..  .|+++|.+|+..|+|++|+.+|+++++++|+ +.+|+++|.+|.++|+|++|+.
T Consensus        17 ~~~d~~~Al~~~~~i---~~~~~~--~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~   91 (192)
T d1hh8a_          17 DKKDWKGALDAFSAV---QDPHSR--ICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIK   91 (192)
T ss_dssp             HTTCHHHHHHHHHTS---SSCCHH--HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HCCCHHHHHHHHHhc---CCCCHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHHH
Confidence            778999999999875   333334  4889999999999999999999999999999 9999999999999999999999


Q ss_pred             HHHHHHhcCCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 014256          129 DCTEALNLDDRY----------------IKAYSRRATARKELGKLKESIEDSEFALRLEPQN  174 (428)
Q Consensus       129 ~~~~al~l~p~~----------------~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~  174 (428)
                      +|++|+...+.+                ..+++++|.++..+|++++|.+.|.+++.+.|..
T Consensus        92 ~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~  153 (192)
T d1hh8a_          92 DLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  153 (192)
T ss_dssp             HHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             HHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            999999875543                4788999999999999999999999999999874

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.64  E-value=1.9e-15  Score=138.06  Aligned_cols=130  Identities=17%  Similarity=0.068  Sum_probs=117.2

Q ss_pred             CCCCcchHHHHHhhhhcCCCC--chHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHH
Q 014256           51 YSRNYDPVSHISSSLMNEEST--PDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAE  127 (428)
Q Consensus        51 ~g~~~~Ai~~~~~al~~~p~~--~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~  127 (428)
                      ..+.+.|+..+.+++...+..  ..+..++.+|.+|+..|+|++|+.+|++++.++|+ +.+|+++|.+|..+|++++|+
T Consensus        12 ~~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~   91 (259)
T d1xnfa_          12 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAY   91 (259)
T ss_dssp             CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhh
Confidence            345667888888888765422  34666999999999999999999999999999999 999999999999999999999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHH
Q 014256          128 DDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQ  180 (428)
Q Consensus       128 ~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~  180 (428)
                      ..|++++.++|+++.+++++|.++..+|++++|+..|+++++++|++......
T Consensus        92 ~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  144 (259)
T d1xnfa_          92 EAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLW  144 (259)
T ss_dssp             HHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             hhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHH
Confidence            99999999999999999999999999999999999999999999998776433

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=8.6e-16  Score=145.19  Aligned_cols=128  Identities=17%  Similarity=0.232  Sum_probs=119.5

Q ss_pred             cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHH
Q 014256           50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  128 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~  128 (428)
                      ..+.+.+|+..|.+++..+|....+..+..+|.++...|++++|+.+|++++..+|+ +.+|.++|.+|..+|++++|+.
T Consensus       148 ~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~  227 (323)
T d1fcha_         148 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVA  227 (323)
T ss_dssp             HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHH
Confidence            456778899999999999998877777899999999999999999999999999999 9999999999999999999999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH
Q 014256          129 DCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI  177 (428)
Q Consensus       129 ~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~  177 (428)
                      .|+++++++|+++.+++++|.++..+|++++|+..|++++.++|++..+
T Consensus       228 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~  276 (323)
T d1fcha_         228 AYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGP  276 (323)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC---
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhh
Confidence            9999999999999999999999999999999999999999999998775

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1.1e-15  Score=145.70  Aligned_cols=148  Identities=9%  Similarity=0.034  Sum_probs=133.6

Q ss_pred             hccChhhhhcCCCccc-cCC-CCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHH
Q 014256           34 VSSSLKSAKKPSPSGN-SYS-RNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAY  110 (428)
Q Consensus        34 ~~~~~~~a~~~~~~~y-~~g-~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~  110 (428)
                      ..+++..+....|.++ ..| ++++|+.+|++++..+|++..+  |..+|.++...|++++|+.+|.++++++|+ ..+|
T Consensus        72 lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a--~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~  149 (315)
T d2h6fa1          72 LNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQV--WHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAW  149 (315)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHH
T ss_pred             HCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhH--HHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHH
Confidence            4566666666666666 555 5899999999999999998887  889999999999999999999999999999 9999


Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 014256          111 ANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGK------LKESIEDSEFALRLEPQNQEIKKQLAE  183 (428)
Q Consensus       111 ~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~------~~eA~~~~~~al~l~P~~~~~~~~l~~  183 (428)
                      +++|.++..+|+|++|+.+|+++++++|.+..+|+++|.++..+|.      +++|+..+.+++.++|++..++..+..
T Consensus       150 ~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~  228 (315)
T d2h6fa1         150 QHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKG  228 (315)
T ss_dssp             HHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHH
Confidence            9999999999999999999999999999999999999999999887      579999999999999999988665543

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.60  E-value=2.2e-15  Score=137.72  Aligned_cols=135  Identities=16%  Similarity=0.046  Sum_probs=118.8

Q ss_pred             ChhhhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHH
Q 014256           37 SLKSAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRA  114 (428)
Q Consensus        37 ~~~~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla  114 (428)
                      ....++-.+|.+| ..|++++|+..|.+++.++|++..+  ++.+|.++...|++++|+.+|++++.++|+ +.+++++|
T Consensus        35 ~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a--~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg  112 (259)
T d1xnfa_          35 ERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEV--FNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG  112 (259)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHH--HhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHH
Confidence            3445666778888 9999999999999999999998877  889999999999999999999999999999 88999999


Q ss_pred             HHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 014256          115 MAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQ  173 (428)
Q Consensus       115 ~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~  173 (428)
                      .+|..+|++++|+..|+++++++|.+......++.++...+....+...........+.
T Consensus       113 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (259)
T d1xnfa_         113 IALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKE  171 (259)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCC
T ss_pred             HHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchh
Confidence            99999999999999999999999999999888888888888766665555555555544

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=3.7e-15  Score=120.86  Aligned_cols=100  Identities=17%  Similarity=0.188  Sum_probs=95.7

Q ss_pred             cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHH
Q 014256           50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  128 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~  128 (428)
                      ..|++++|+..|.+++..+|.+..+  |..+|.+|...|+|++|+..|.+++.++|+ +.+|+++|.++..+|+|++|+.
T Consensus        15 ~~g~~~eAi~~~~~al~~~p~~~~~--~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~   92 (117)
T d1elwa_          15 SVGNIDDALQCYSEAIKLDPHNHVL--YSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKR   92 (117)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHhcCCcchhh--hhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHHHHH
Confidence            7789999999999999999998877  889999999999999999999999999999 9999999999999999999999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHH
Q 014256          129 DCTEALNLDDRYIKAYSRRATAR  151 (428)
Q Consensus       129 ~~~~al~l~p~~~~a~~~lg~~~  151 (428)
                      .|.+++.++|+++.++..++.+.
T Consensus        93 ~~~~a~~~~p~~~~~~~~l~~l~  115 (117)
T d1elwa_          93 TYEEGLKHEANNPQLKEGLQNME  115 (117)
T ss_dssp             HHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHh
Confidence            99999999999999999988765

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=7e-15  Score=129.90  Aligned_cols=100  Identities=27%  Similarity=0.263  Sum_probs=91.0

Q ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 014256           73 DATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARK  152 (428)
Q Consensus        73 ~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~  152 (428)
                      ++..+++.|..++..|+|+.|+.+|.++  .+|++.+|+|+|.+|+.+|+|++|+.+|++|++++|+++.+|+++|.++.
T Consensus         4 ~~~~l~~~g~~~~~~~d~~~Al~~~~~i--~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~   81 (192)
T d1hh8a_           4 EAISLWNEGVLAADKKDWKGALDAFSAV--QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY   81 (192)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTS--SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence            3455778999999999999999999874  23458899999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCc
Q 014256          153 ELGKLKESIEDSEFALRLEPQN  174 (428)
Q Consensus       153 ~lg~~~eA~~~~~~al~l~P~~  174 (428)
                      .+|+|++|+.+|++++...+.+
T Consensus        82 ~~g~~~~A~~~~~kAl~~~~~n  103 (192)
T d1hh8a_          82 QTEKYDLAIKDLKEALIQLRGN  103 (192)
T ss_dssp             HTTCHHHHHHHHHHHHHTTTTC
T ss_pred             hhccHHHHHHHHHHHHHhCccC
Confidence            9999999999999999876654

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.7e-14  Score=117.79  Aligned_cols=111  Identities=13%  Similarity=0.038  Sum_probs=98.6

Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHH---hcCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHH
Q 014256           78 KELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLK---LRRFQEAEDDCTEALNLDDRY--IKAYSRRATAR  151 (428)
Q Consensus        78 ~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~---~~~~~eA~~~~~~al~l~p~~--~~a~~~lg~~~  151 (428)
                      -++++.++..+++++|.+.|++++.++|. +.+++|+|.|+++   .+++++|+..|++++..+|.+  ..+++++|.+|
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y   82 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   82 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            36888999999999999999999999998 9999999999987   456678999999999999765  45899999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Q 014256          152 KELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKSLY  188 (428)
Q Consensus       152 ~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~~~  188 (428)
                      ..+|+|++|+.+|+++++++|++..+......+....
T Consensus        83 ~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~  119 (122)
T d1nzna_          83 YRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAM  119 (122)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999876666555433

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=2.3e-14  Score=123.98  Aligned_cols=134  Identities=16%  Similarity=0.198  Sum_probs=111.9

Q ss_pred             hhhhcchhhhhh-hhhcccchhhhhccChhhhhcCCCccccCCCCcchHHHHHhhhhcCCCCc-------------hHHH
Q 014256           11 DWDLSLNEKDKK-MKHKASSKDNLVSSSLKSAKKPSPSGNSYSRNYDPVSHISSSLMNEESTP-------------DATS   76 (428)
Q Consensus        11 ~~e~~~~e~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~y~~g~~~~Ai~~~~~al~~~p~~~-------------~a~~   76 (428)
                      .|+|+.++++.. ...+..|+.+|..++|                ++|+..|.+++...|...             ....
T Consensus         1 ~~~~~~~ek~~~a~~l~~~G~~~~~~~~~----------------~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~   64 (170)
T d1p5qa1           1 SWEMNSEEKLEQSTIVKERGTVYFKEGKY----------------KQALLQYKKIVSWLEYESSFSNEEAQKAQALRLAS   64 (170)
T ss_dssp             GGGCCHHHHHHHHHHHHHHHHHHHHHTCH----------------HHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHcCCH----------------HHHHHHHHHHHHHhhhccccchHHHhhhchhHHHH
Confidence            599999999887 5556677777665555                567777777776655432             1233


Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 014256           77 EKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG  155 (428)
Q Consensus        77 ~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg  155 (428)
                      +.++|.+|++.|+|++|+.+++++|.++|+ +.+|+++|.||..+|+|++|+.+|.+++.++|+++.+...++.++..++
T Consensus        65 ~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~  144 (170)
T d1p5qa1          65 HLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIR  144 (170)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            678999999999999999999999999998 9999999999999999999999999999999999999999999988877


Q ss_pred             CHHHH
Q 014256          156 KLKES  160 (428)
Q Consensus       156 ~~~eA  160 (428)
                      .+.+.
T Consensus       145 ~~~~~  149 (170)
T d1p5qa1         145 RQLAR  149 (170)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66544

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.4e-14  Score=123.72  Aligned_cols=102  Identities=15%  Similarity=0.132  Sum_probs=95.8

Q ss_pred             cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHH
Q 014256           50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAED  128 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~  128 (428)
                      ..|+|++|+.+|.+++..+|.+..+  |..+|.+|+..|++++|+.+|.++++++|+ ..+|.++|.++..+|+|++|+.
T Consensus        22 ~~~~y~~A~~~~~~al~~~p~~~~~--~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~eA~~   99 (159)
T d1a17a_          22 KAKDYENAIKFYSQAIELNPSNAIY--YGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALR   99 (159)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HcCCHHHHHHHhhhccccchhhhhh--hhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHHHHHH
Confidence            7889999999999999999998777  889999999999999999999999999999 8999999999999999999999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHH
Q 014256          129 DCTEALNLDDRYIKAYSRRATARKE  153 (428)
Q Consensus       129 ~~~~al~l~p~~~~a~~~lg~~~~~  153 (428)
                      +|.+++.++|+++.++..++.+...
T Consensus       100 ~~~~a~~~~p~~~~~~~~l~~~~~~  124 (159)
T d1a17a_         100 DYETVVKVKPHDKDAKMKYQECNKI  124 (159)
T ss_dssp             HHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            9999999999999998887766543

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.53  E-value=2.7e-14  Score=114.69  Aligned_cols=92  Identities=15%  Similarity=0.062  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 014256           77 EKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG  155 (428)
Q Consensus        77 ~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg  155 (428)
                      ++.+|.++++.|++.+|+.+|++++..+|+ +.+|.++|.++..+|++++|+.++++++.++|+++.+++.+|.+|..+|
T Consensus        19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g   98 (112)
T d1hxia_          19 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH   98 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCC
Confidence            568999999999999999999999999999 9999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHH
Q 014256          156 KLKESIEDSEFAL  168 (428)
Q Consensus       156 ~~~eA~~~~~~al  168 (428)
                      ++++|++.+++.|
T Consensus        99 ~~~~A~~~l~~~l  111 (112)
T d1hxia_          99 NANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHh
Confidence            9999999999876

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.52  E-value=7e-14  Score=120.52  Aligned_cols=133  Identities=16%  Similarity=0.209  Sum_probs=108.8

Q ss_pred             hhhhcchhhhhh-hhhcccchhhhhccChhhhhcCCCccccCCCCcchHHHHHhhhhcCCCCc-------------hHHH
Q 014256           11 DWDLSLNEKDKK-MKHKASSKDNLVSSSLKSAKKPSPSGNSYSRNYDPVSHISSSLMNEESTP-------------DATS   76 (428)
Q Consensus        11 ~~e~~~~e~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~y~~g~~~~Ai~~~~~al~~~p~~~-------------~a~~   76 (428)
                      .|+|+.+|++.. ......|+.+|..++|..                |+..|.+++...+...             .+..
T Consensus         3 ~~~m~~~E~~~~a~~~~e~G~~~~~~~~~~~----------------A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~   66 (168)
T d1kt1a1           3 SWEMDTKEKLEQAAIVKEKGTVYFKGGKYVQ----------------AVIQYGKIVSWLEMEYGLSEKESKASESFLLAA   66 (168)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHHHHHHTTCHHH----------------HHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHH
T ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHcCCHHH----------------HHHHHHHHHHHHHHhhccchhhhhhcchhHHHH
Confidence            599999998877 566677888877666655                5555555554322211             2234


Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 014256           77 EKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG  155 (428)
Q Consensus        77 ~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg  155 (428)
                      +.++|.+|++.|+|.+|+.+|++++.++|+ ..+|+++|.+|..+|+|++|+.+|.+++.++|++..++..++.+...++
T Consensus        67 ~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~  146 (168)
T d1kt1a1          67 FLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAK  146 (168)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            678999999999999999999999999999 9999999999999999999999999999999999999999999888777


Q ss_pred             CHHH
Q 014256          156 KLKE  159 (428)
Q Consensus       156 ~~~e  159 (428)
                      .+.+
T Consensus       147 ~~~e  150 (168)
T d1kt1a1         147 EHNE  150 (168)
T ss_dssp             HHHH
T ss_pred             hHHH
Confidence            6654

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.50  E-value=6.1e-14  Score=119.07  Aligned_cols=130  Identities=16%  Similarity=0.171  Sum_probs=106.7

Q ss_pred             hhhhcchhhhhh-hhhcccchhhhhccChhhhhcCCCccccCCCCcchHHHHHhhhhcCCCCc--------------hHH
Q 014256           11 DWDLSLNEKDKK-MKHKASSKDNLVSSSLKSAKKPSPSGNSYSRNYDPVSHISSSLMNEESTP--------------DAT   75 (428)
Q Consensus        11 ~~e~~~~e~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~y~~g~~~~Ai~~~~~al~~~p~~~--------------~a~   75 (428)
                      -|+++.+++... ...+..|+.+|..++|..|+                ..|.+++...+...              .+.
T Consensus         5 ~~~~~~~e~~~~a~~~~~~G~~~f~~~~y~~A~----------------~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~   68 (153)
T d2fbna1           5 IYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAI----------------VKYKEALDFFIHTEEWDDQILLDKKKNIEIS   68 (153)
T ss_dssp             GGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHH----------------HHHHHHHHTTTTCTTCCCHHHHHHHHHHHHH
T ss_pred             hhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHH----------------HHHHHHHhhCcchhhhhhHHHHHhhhhHHHH
Confidence            589998888877 67778888887766665554                44444444332211              123


Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 014256           76 SEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKEL  154 (428)
Q Consensus        76 ~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~l  154 (428)
                      .+.++|.+|++.|+|++|+.+|+++++++|. ..+|+++|.+|..+|+|++|+.+|.+++.++|++..+...++.+...+
T Consensus        69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl  148 (153)
T d2fbna1          69 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKL  148 (153)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            4778999999999999999999999999998 999999999999999999999999999999999999999999887766


Q ss_pred             CC
Q 014256          155 GK  156 (428)
Q Consensus       155 g~  156 (428)
                      ++
T Consensus       149 ~~  150 (153)
T d2fbna1         149 KE  150 (153)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.49  E-value=4.3e-15  Score=130.64  Aligned_cols=113  Identities=11%  Similarity=0.050  Sum_probs=96.8

Q ss_pred             hcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHH
Q 014256           42 KKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLK  119 (428)
Q Consensus        42 ~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~  119 (428)
                      +...|+.| ..|+|++|+..|.+++..+|.+..+  |.++|.+|.+.|+|++|+.+|.+++.++|+ ..+|+++|.+|..
T Consensus         7 l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~--~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~   84 (201)
T d2c2la1           7 LKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVY--YTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE   84 (201)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHH--HHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH--HHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            33445665 8899999999999999999998877  889999999999999999999999999999 9999999999999


Q ss_pred             hcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 014256          120 LRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGK  156 (428)
Q Consensus       120 ~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~  156 (428)
                      +|+|++|+.+|++|+.++|++...+...+..+...++
T Consensus        85 l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~~~~  121 (201)
T d2c2la1          85 MESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK  121 (201)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence            9999999999999999998765444444444444333

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.43  E-value=5.4e-13  Score=112.12  Aligned_cols=104  Identities=19%  Similarity=0.106  Sum_probs=87.6

Q ss_pred             HHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHh----------cCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 014256           82 NECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKL----------RRFQEAEDDCTEALNLDDRYIKAYSRRATA  150 (428)
Q Consensus        82 ~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~----------~~~~eA~~~~~~al~l~p~~~~a~~~lg~~  150 (428)
                      ..|.+.+.|++|+.+|+++++++|+ +.+++++|.++..+          +.+++|+..|++|++++|+++.+|+++|.+
T Consensus         5 ~~~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~   84 (145)
T d1zu2a1           5 TEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNA   84 (145)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHH
Confidence            3456677899999999999999998 88899999888854          456889999999999999999999999999


Q ss_pred             HHHcCC-----------HHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 014256          151 RKELGK-----------LKESIEDSEFALRLEPQNQEIKKQLAEVK  185 (428)
Q Consensus       151 ~~~lg~-----------~~eA~~~~~~al~l~P~~~~~~~~l~~a~  185 (428)
                      |..+|+           |++|...|++++.++|++..++..+..+.
T Consensus        85 y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~  130 (145)
T d1zu2a1          85 YTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA  130 (145)
T ss_dssp             HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHH
Confidence            988764           68899999999999999988876665443

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1.8e-13  Score=111.57  Aligned_cols=103  Identities=10%  Similarity=0.028  Sum_probs=93.0

Q ss_pred             cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHH---hcCHHHHHHHHHHHHccCCc---HHHHHHHHHHHHHhcCH
Q 014256           50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFK---QKKFKEAIDCYSRSIALSPT---AVAYANRAMAYLKLRRF  123 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~---~g~~~~Ai~~y~~al~~~p~---~~~~~nla~~~~~~~~~  123 (428)
                      ..+++++|++.|++++..+|.+..+  ++++|.++++   .+++.+|+..|++++..+|.   ..+|+++|.+|..+|+|
T Consensus        11 ~~~~l~~Ae~~Y~~aL~~~p~~~~~--~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~~   88 (122)
T d1nzna_          11 SVEDLLKFEKKFQSEKAAGSVSKST--QFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEY   88 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCCCHHH--HHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             CHHHHHHHHHHHHHHHhhCCCCHHH--HHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhh
Confidence            5678899999999999999998887  7799999987   45677899999999999886   45899999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 014256          124 QEAEDDCTEALNLDDRYIKAYSRRATARKEL  154 (428)
Q Consensus       124 ~eA~~~~~~al~l~p~~~~a~~~lg~~~~~l  154 (428)
                      ++|+.+|++++.++|++..+...++.+...+
T Consensus        89 ~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~  119 (122)
T d1nzna_          89 EKALKYVRGLLQTEPQNNQAKELERLIDKAM  119 (122)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999988877654

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.39  E-value=3e-13  Score=113.72  Aligned_cols=113  Identities=12%  Similarity=0.053  Sum_probs=98.8

Q ss_pred             ccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHh----------cCHHHHHHHHHHHHccCCc-HHHHHHHH
Q 014256           47 SGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQ----------KKFKEAIDCYSRSIALSPT-AVAYANRA  114 (428)
Q Consensus        47 ~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~----------g~~~~Ai~~y~~al~~~p~-~~~~~nla  114 (428)
                      ..| +.+.+++|+..|++++..+|++..+  +..+|.++...          +.+++|+.+|+++++++|+ +.+|+++|
T Consensus         5 ~~~~r~~~fe~A~~~~e~al~~~P~~~~~--~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG   82 (145)
T d1zu2a1           5 TEFDRILLFEQIRQDAENTYKSNPLDADN--LTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIG   82 (145)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHccHHHHHHHHHHHHhhCCcchHH--HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHH
Confidence            344 6678899999999999999999888  77999999854          5568999999999999999 99999999


Q ss_pred             HHHHHhcC-----------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 014256          115 MAYLKLRR-----------FQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESI  161 (428)
Q Consensus       115 ~~~~~~~~-----------~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~  161 (428)
                      .+|..+|+           |++|+.+|++++.++|++..++..++.+....+.+.++.
T Consensus        83 ~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e~~  140 (145)
T d1zu2a1          83 NAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEAY  140 (145)
T ss_dssp             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHHHH
T ss_pred             HHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            99988764           799999999999999999999999998887766666553

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.37  E-value=5.2e-13  Score=113.42  Aligned_cols=102  Identities=25%  Similarity=0.264  Sum_probs=88.4

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-
Q 014256           74 ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-------------AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDR-  139 (428)
Q Consensus        74 a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-------------~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~-  139 (428)
                      +......|+.++..|+|++|+..|++++++.|+             +.+|.|+|.+|..+|+|++|+.+|.+++.+.|. 
T Consensus         9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~   88 (156)
T d2hr2a1           9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   88 (156)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence            434556699999999999999999999998754             357999999999999999999999999987542 


Q ss_pred             ----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH
Q 014256          140 ----------YIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQ  175 (428)
Q Consensus       140 ----------~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~  175 (428)
                                ...+++++|.+|..+|++++|+..|++++.+.|...
T Consensus        89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~  134 (156)
T d2hr2a1          89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK  134 (156)
T ss_dssp             CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred             ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence                      355799999999999999999999999999976543

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.37  E-value=1.8e-13  Score=117.89  Aligned_cols=112  Identities=13%  Similarity=0.173  Sum_probs=93.8

Q ss_pred             cCCCCcchHHHHHhhhhcCCC--------------CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHH
Q 014256           50 SYSRNYDPVSHISSSLMNEES--------------TPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRA  114 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~--------------~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla  114 (428)
                      ..|+|.+|+..|.+++...+.              ...+..+.++|.++++.|+|++|+..|+++|+++|+ +.+|+++|
T Consensus        39 ~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g  118 (169)
T d1ihga1          39 KSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRA  118 (169)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHH
Confidence            556666677777666653211              012334789999999999999999999999999999 99999999


Q ss_pred             HHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 014256          115 MAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESI  161 (428)
Q Consensus       115 ~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~  161 (428)
                      .+|..+|+|++|+.+|.++++++|++..++..++.+...+..+.++.
T Consensus       119 ~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~~~  165 (169)
T d1ihga1         119 QGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE  165 (169)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999988877666543

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=3.8e-12  Score=104.31  Aligned_cols=105  Identities=11%  Similarity=0.140  Sum_probs=89.4

Q ss_pred             hcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc--------HHHHHH
Q 014256           42 KKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT--------AVAYAN  112 (428)
Q Consensus        42 ~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~--------~~~~~n  112 (428)
                      ...+|..| ..|+|++|+.+|.+++..+|.+..+  +.++|.+|++.|+|++|+.+|.++++++|.        ..+|.+
T Consensus         7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~--~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~   84 (128)
T d1elra_           7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTY--ITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR   84 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHH--HHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            34456665 7899999999999999999998776  889999999999999999999999998865        357888


Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 014256          113 RAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRAT  149 (428)
Q Consensus       113 la~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~  149 (428)
                      +|.++..+++|++|+.+|.+++..+++ +.....+..
T Consensus        85 lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~  120 (128)
T d1elra_          85 IGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQ  120 (128)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHhcCCC-HHHHHHHHH
Confidence            999999999999999999999998875 444444433

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=1.2e-11  Score=95.77  Aligned_cols=82  Identities=12%  Similarity=0.059  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc--------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHH
Q 014256           74 ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT--------AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYS  145 (428)
Q Consensus        74 a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~--------~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~  145 (428)
                      +..++++|.++++.|+|.+|+.+|++++++.|.        +.++.++|.++.++|+|++|+..|+++++++|+++.++.
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~   84 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence            344788999999999999999999999887432        577889999999999999999999999999999999988


Q ss_pred             HHHHHHHHcC
Q 014256          146 RRATARKELG  155 (428)
Q Consensus       146 ~lg~~~~~lg  155 (428)
                      +++.....++
T Consensus        85 Nl~~~~~~l~   94 (95)
T d1tjca_          85 NLKYFEYIMA   94 (95)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhC
Confidence            8887666543

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.24  E-value=6.8e-12  Score=100.31  Aligned_cols=87  Identities=15%  Similarity=0.029  Sum_probs=81.7

Q ss_pred             Cccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCH
Q 014256           46 PSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRF  123 (428)
Q Consensus        46 ~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~  123 (428)
                      |..+ ..|++.+|+..|++++..+|.+..+  |..+|.++...|++++|+.+|+++++++|+ ..+|.++|.+|..+|++
T Consensus        23 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a--~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~  100 (112)
T d1hxia_          23 GLSMLKLANLAEAALAFEAVCQKEPEREEA--WRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA  100 (112)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHhhhcccccccchh--hhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCH
Confidence            4444 8899999999999999999998777  889999999999999999999999999999 99999999999999999


Q ss_pred             HHHHHHHHHHH
Q 014256          124 QEAEDDCTEAL  134 (428)
Q Consensus       124 ~eA~~~~~~al  134 (428)
                      ++|++.+++.|
T Consensus       101 ~~A~~~l~~~l  111 (112)
T d1hxia_         101 NAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999999876

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.19  E-value=2e-11  Score=115.84  Aligned_cols=115  Identities=9%  Similarity=-0.045  Sum_probs=98.8

Q ss_pred             cCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhc--CHHHHHHHHHHHHccCCc-HHH-HHHHHHHH
Q 014256           43 KPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQK--KFKEAIDCYSRSIALSPT-AVA-YANRAMAY  117 (428)
Q Consensus        43 ~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g--~~~~Ai~~y~~al~~~p~-~~~-~~nla~~~  117 (428)
                      ...+..+ ..|.+.+|+.+|++++..+|++..+  |..+|.++...+  ++++|+.++.++++.+|. ..+ +..+|.++
T Consensus        77 ~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~--~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~  154 (334)
T d1dcea1          77 ETEKSPEESAALVKAELGFLESCLRVNPKSYGT--WHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAA  154 (334)
T ss_dssp             HTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHH--HHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHH
Confidence            4444444 6677899999999999999998887  678888877765  489999999999999998 554 56788999


Q ss_pred             HHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q 014256          118 LKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKE  159 (428)
Q Consensus       118 ~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~e  159 (428)
                      ...+.+++|+..+++++.++|++..+|+++|.++..+|++++
T Consensus       155 ~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~  196 (334)
T d1dcea1         155 QAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPD  196 (334)
T ss_dssp             HTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCC
T ss_pred             HhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHH
Confidence            999999999999999999999999999999999999887653

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.18  E-value=1.2e-11  Score=115.46  Aligned_cols=135  Identities=10%  Similarity=-0.067  Sum_probs=113.2

Q ss_pred             hcCCCccc-cCCCCcchHHHHHhhhhcCCC----CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-------HHH
Q 014256           42 KKPSPSGN-SYSRNYDPVSHISSSLMNEES----TPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-------AVA  109 (428)
Q Consensus        42 ~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~----~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-------~~~  109 (428)
                      +...|..| ..+++++|+.+|.+++.+...    ...+..+.++|.+|.+.|++++|+.+|++++.+.+.       ..+
T Consensus        40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~  119 (290)
T d1qqea_          40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF  119 (290)
T ss_dssp             HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHH
Confidence            35666777 899999999999999987321    223556889999999999999999999999987532       567


Q ss_pred             HHHHHHHHHH-hcCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHH
Q 014256          110 YANRAMAYLK-LRRFQEAEDDCTEALNLDDR------YIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQE  176 (428)
Q Consensus       110 ~~nla~~~~~-~~~~~eA~~~~~~al~l~p~------~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~  176 (428)
                      +.++|.+|.. .|+|++|+..|.+++.+.+.      ...++.++|.++..+|+|++|+..|++++.+.|.+..
T Consensus       120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~  193 (290)
T d1qqea_         120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL  193 (290)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTT
T ss_pred             HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchh
Confidence            8889988866 69999999999999987542      2567999999999999999999999999999887653

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=1.4e-11  Score=124.16  Aligned_cols=134  Identities=12%  Similarity=-0.025  Sum_probs=93.1

Q ss_pred             cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCcHHHHHHHHHHHHHhcCHHHHHHH
Q 014256           50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLKLRRFQEAEDD  129 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~~~~~~nla~~~~~~~~~~eA~~~  129 (428)
                      ..+.|..|+..|.+++..+|.+..+  +.++|..+.+.|++..|+..|.+++..+| ..++.++|.++...|+|++|+.+
T Consensus        98 a~~~Y~~ai~~l~~~~~l~~~~~~~--~~~lg~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~LG~l~~~~~~~~~A~~~  174 (497)
T d1ya0a1          98 ASGFYTQLLQELCTVFNVDLPCRVK--SSQLGIISNKQTHTSAIVKPQSSSCSYIC-QHCLVHLGDIARYRNQTSQAESY  174 (497)
T ss_dssp             HHHHHHHHHHHHTC---------------------------------CCHHHHHHH-HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCChhhHHH--HHHhHHHHHhCCCHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHcccHHHHHHH
Confidence            4566777888888888888877666  77999999999999999999999998766 46788999999999999999999


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 014256          130 CTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKS  186 (428)
Q Consensus       130 ~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~  186 (428)
                      |.+|+.++|++..+|+++|.++...|++.+|+.+|.+++.+.|..+.+..++..+..
T Consensus       175 y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~  231 (497)
T d1ya0a1         175 YRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS  231 (497)
T ss_dssp             HHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999888876544

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=1.6e-10  Score=89.27  Aligned_cols=82  Identities=16%  Similarity=0.094  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHH
Q 014256          107 AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY-------IKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKK  179 (428)
Q Consensus       107 ~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~-------~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~  179 (428)
                      +.-++++|.++++.|+|.+|+.+|++|+++.|.+       ..++.++|.++..+|++++|+..|+++++++|+++.+..
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~   84 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence            4557899999999999999999999999986643       678999999999999999999999999999999999998


Q ss_pred             HHHHHHHHH
Q 014256          180 QLAEVKSLY  188 (428)
Q Consensus       180 ~l~~a~~~~  188 (428)
                      ++......+
T Consensus        85 Nl~~~~~~l   93 (95)
T d1tjca_          85 NLKYFEYIM   93 (95)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            887665544

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.13  E-value=3.9e-10  Score=106.65  Aligned_cols=133  Identities=11%  Similarity=0.065  Sum_probs=114.7

Q ss_pred             CCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHH----------HhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHh
Q 014256           52 SRNYDPVSHISSSLMNEESTPDATSEKELGNECF----------KQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKL  120 (428)
Q Consensus        52 g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~----------~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~  120 (428)
                      +..++|+..+.+++..+|++..+  |..++.++.          ..|.+.+|+.+|++++..+|+ ..+|+++|.++...
T Consensus        43 ~~~~~al~~~~~~l~~~P~~~~a--~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~  120 (334)
T d1dcea1          43 ELDESVLELTSQILGANPDFATL--WNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL  120 (334)
T ss_dssp             CCSHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC
T ss_pred             cccHHHHHHHHHHHHHCCCcHHH--HHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHh
Confidence            33479999999999999998877  555555544          445689999999999999998 99999999998887


Q ss_pred             cC--HHHHHHHHHHHHhcCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 014256          121 RR--FQEAEDDCTEALNLDDRYIKAY-SRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEVKS  186 (428)
Q Consensus       121 ~~--~~eA~~~~~~al~l~p~~~~a~-~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a~~  186 (428)
                      ++  +++|+..|.+++.++|.+..++ +.+|.++...|.+++|+..+++++.++|++..++..+..+..
T Consensus       121 ~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~  189 (334)
T d1dcea1         121 PEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLP  189 (334)
T ss_dssp             SSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            75  8999999999999999998886 577899999999999999999999999999998877665543

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.11  E-value=2.2e-11  Score=113.57  Aligned_cols=138  Identities=12%  Similarity=0.067  Sum_probs=111.8

Q ss_pred             hhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCc----hHHHHHHHHHHHHH-hcCHHHHHHHHHHHHccCC---c----
Q 014256           40 SAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTP----DATSEKELGNECFK-QKKFKEAIDCYSRSIALSP---T----  106 (428)
Q Consensus        40 ~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~----~a~~~~~lg~~~~~-~g~~~~Ai~~y~~al~~~p---~----  106 (428)
                      .++..+|.+| ..|++++|+.+|++++.+.+...    .+..+..+|.+|.. .|+|++|+.+|.+++.+.+   .    
T Consensus        78 ~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~  157 (290)
T d1qqea_          78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALS  157 (290)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhh
Confidence            4556677888 89999999999999998755432    24557889998876 5999999999999998742   1    


Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH
Q 014256          107 AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYI-------KAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI  177 (428)
Q Consensus       107 ~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~-------~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~  177 (428)
                      ..++.++|.+|..+|+|++|+..|.+++...+.+.       ..+++.|.++...|++..|...+.+++.++|.....
T Consensus       158 ~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~s  235 (290)
T d1qqea_         158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS  235 (290)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred             hhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccch
Confidence            56789999999999999999999999999987653       457889999999999999999999999999976553

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.98  E-value=4.3e-10  Score=94.90  Aligned_cols=91  Identities=16%  Similarity=0.170  Sum_probs=79.3

Q ss_pred             cCCCCcchHHHHHhhhhcCCCCc----------hHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCC-------c-----H
Q 014256           50 SYSRNYDPVSHISSSLMNEESTP----------DATSEKELGNECFKQKKFKEAIDCYSRSIALSP-------T-----A  107 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~~~----------~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p-------~-----~  107 (428)
                      ..|+|++|+..|.+++.+.|...          .+.++.++|.+|...|+|++|+.+|++++.+.|       .     .
T Consensus        21 ~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  100 (156)
T d2hr2a1          21 VAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWI  100 (156)
T ss_dssp             HHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhH
Confidence            67999999999999999887654          256688999999999999999999999997643       2     3


Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 014256          108 VAYANRAMAYLKLRRFQEAEDDCTEALNLDDRY  140 (428)
Q Consensus       108 ~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~  140 (428)
                      .+++++|.+|..+|++++|+..|.+++.+.|..
T Consensus       101 ~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~  133 (156)
T d2hr2a1         101 SAVYSRALALDGLGRGAEAMPEFKKVVEMIEER  133 (156)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence            468999999999999999999999999987643

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.93  E-value=5.9e-09  Score=90.06  Aligned_cols=93  Identities=13%  Similarity=0.023  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-----------------------HHHHHHHHHHHHHhcCHHHHHHHHHH
Q 014256           76 SEKELGNECFKQKKFKEAIDCYSRSIALSPT-----------------------AVAYANRAMAYLKLRRFQEAEDDCTE  132 (428)
Q Consensus        76 ~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-----------------------~~~~~nla~~~~~~~~~~eA~~~~~~  132 (428)
                      .+...|..+...|++++|+.+|.+++.+.+.                       ..++.++|.+++.+|++++|+.+|++
T Consensus        13 ~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~   92 (179)
T d2ff4a2          13 AEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEA   92 (179)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHH
Confidence            3778899999999999999999999998653                       14678899999999999999999999


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 014256          133 ALNLDDRYIKAYSRRATARKELGKLKESIEDSEFAL  168 (428)
Q Consensus       133 al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al  168 (428)
                      ++.++|.+..+|.+++.++..+|++.+|+..|+++.
T Consensus        93 al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~  128 (179)
T d2ff4a2          93 LTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK  128 (179)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            999999999999999999999999999999999983

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.87  E-value=1.3e-09  Score=100.28  Aligned_cols=128  Identities=8%  Similarity=-0.045  Sum_probs=108.1

Q ss_pred             cccCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHH
Q 014256           48 GNSYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEA  126 (428)
Q Consensus        48 ~y~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA  126 (428)
                      ++..|++++|+..|+++++.+|.+..+  +..+|.+|+..|+|++|+..|+++++++|+ ...+.+++.++...+..+++
T Consensus         6 aL~~G~l~eAl~~l~~al~~~P~d~~a--r~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a   83 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAIKASPKDASL--RSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF   83 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTCTTCHHH--HHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHCCCCHHH--HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHH
Confidence            346799999999999999999998888  669999999999999999999999999998 78888888888887777777


Q ss_pred             HHHHHHHHh-cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHH
Q 014256          127 EDDCTEALN-LDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEI  177 (428)
Q Consensus       127 ~~~~~~al~-l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~  177 (428)
                      ...+..... .+|.....+...+.++...|++++|...+.++..+.|..+..
T Consensus        84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~  135 (264)
T d1zbpa1          84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFL  135 (264)
T ss_dssp             TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEE
T ss_pred             HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcc
Confidence            665544333 356667778888999999999999999999999999987653

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.83  E-value=3.4e-08  Score=92.10  Aligned_cols=143  Identities=9%  Similarity=0.012  Sum_probs=112.2

Q ss_pred             CCCcchHHHHHhhhhc-CCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc--HHHHHHHHHHHHHhcCHHHHHH
Q 014256           52 SRNYDPVSHISSSLMN-EESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT--AVAYANRAMAYLKLRRFQEAED  128 (428)
Q Consensus        52 g~~~~Ai~~~~~al~~-~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~--~~~~~nla~~~~~~~~~~eA~~  128 (428)
                      +..++|...|++++.. .|.....  |...+..+...|+++.|...|.+++...|.  ..+|..++......|+++.|..
T Consensus        78 ~~~~~a~~i~~ral~~~~p~~~~l--~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~  155 (308)
T d2onda1          78 LFSDEAANIYERAISTLLKKNMLL--YFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRM  155 (308)
T ss_dssp             HHHHHHHHHHHHHHTTTTTTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             cchHHHHHHHHHHHHHcCCCCHHH--HHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHH
Confidence            4456788888888875 5554433  678888888888999999999998888876  5578888888888888999999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCcHHH----------HHHHHHHHHHHHHHHHhch
Q 014256          129 DCTEALNLDDRYIKAYSRRATARKE-LGKLKESIEDSEFALRLEPQNQEI----------KKQLAEVKSLYEKEVFQKA  196 (428)
Q Consensus       129 ~~~~al~l~p~~~~a~~~lg~~~~~-lg~~~eA~~~~~~al~l~P~~~~~----------~~~l~~a~~~~~~a~~~~~  196 (428)
                      .|.+++...|.....+...|..... .|+.+.|...|++++...|.+...          .++...|...|++++...|
T Consensus       156 i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~  234 (308)
T d2onda1         156 IFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS  234 (308)
T ss_dssp             HHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence            9999998888888888888876544 578888888999999888888765          2446677778888777554

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.77  E-value=4.6e-08  Score=91.20  Aligned_cols=125  Identities=11%  Similarity=-0.087  Sum_probs=112.0

Q ss_pred             cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHH-hcCHHHHH
Q 014256           50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLK-LRRFQEAE  127 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~-~~~~~eA~  127 (428)
                      ..|+++.|...|.+++...|.+.. ..|..++....+.|+++.|..+|.+++...|. ...|...|..... .|+.+.|.
T Consensus       111 ~~~~~~~a~~i~~~~l~~~~~~~~-~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~  189 (308)
T d2onda1         111 SRMKYEKVHSIYNRLLAIEDIDPT-LVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAF  189 (308)
T ss_dssp             HTTCHHHHHHHHHHHHTSSSSCTH-HHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred             hcccHHHHHHHHHHHHHHhcCChH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHH
Confidence            789999999999999999887643 23778999999999999999999999999998 7778888876544 58999999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcH
Q 014256          128 DDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQ  175 (428)
Q Consensus       128 ~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~  175 (428)
                      ..|++++...|+++..|...+..+...|+++.|...|++++...|.++
T Consensus       190 ~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~  237 (308)
T d2onda1         190 KIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP  237 (308)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence            999999999999999999999999999999999999999999887553

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.76  E-value=2.9e-08  Score=91.85  Aligned_cols=125  Identities=9%  Similarity=-0.012  Sum_probs=107.7

Q ss_pred             cCCCCcchHHHHHhhhhcCCCCch---HHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-------HHHHHHHHHHHHH
Q 014256           50 SYSRNYDPVSHISSSLMNEESTPD---ATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-------AVAYANRAMAYLK  119 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~~~~---a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-------~~~~~nla~~~~~  119 (428)
                      ..|++++|+..|++++...|.+..   +..+..+|.+++..|++++|+..|.+++.+.+.       ...+.+++.++..
T Consensus        24 ~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (366)
T d1hz4a_          24 NDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFA  103 (366)
T ss_dssp             HTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence            789999999999999999987643   345778999999999999999999999986432       4578899999999


Q ss_pred             hcCHHHHHHHHHHHHhcCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc
Q 014256          120 LRRFQEAEDDCTEALNLDD--------RYIKAYSRRATARKELGKLKESIEDSEFALRLEPQN  174 (428)
Q Consensus       120 ~~~~~eA~~~~~~al~l~p--------~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~  174 (428)
                      .|++..|...+.+++.+.+        ....++..+|.++...|+++.|...+.+++...+..
T Consensus       104 ~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~  166 (366)
T d1hz4a_         104 QGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY  166 (366)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS
T ss_pred             HHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhh
Confidence            9999999999999987643        224567889999999999999999999999987754

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=8.7e-09  Score=103.23  Aligned_cols=112  Identities=13%  Similarity=-0.011  Sum_probs=84.5

Q ss_pred             hhhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHH
Q 014256           40 SAKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAY  117 (428)
Q Consensus        40 ~a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~  117 (428)
                      .+...+|..+ ..|+++.|+..+.+++..++.    .++..+|.++...|+|++|+.+|.+|+.++|+ ..+|+++|.++
T Consensus       121 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~----~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~  196 (497)
T d1ya0a1         121 VKSSQLGIISNKQTHTSAIVKPQSSSCSYICQ----HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILA  196 (497)
T ss_dssp             ----------------------CCHHHHHHHH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHH
T ss_pred             HHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHH----HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHH
Confidence            3445556666 789999999999999887753    34779999999999999999999999999999 99999999999


Q ss_pred             HHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 014256          118 LKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELG  155 (428)
Q Consensus       118 ~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg  155 (428)
                      ...|++.+|+..|.+|+.++|.++.++.+++.++....
T Consensus       197 ~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~  234 (497)
T d1ya0a1         197 SSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKAL  234 (497)
T ss_dssp             HHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHT
T ss_pred             HHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999887654

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.56  E-value=2.3e-08  Score=91.66  Aligned_cols=119  Identities=14%  Similarity=0.134  Sum_probs=97.2

Q ss_pred             HHHHHhcCHHHHHHHHHHHHccCCc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Q 014256           82 NECFKQKKFKEAIDCYSRSIALSPT-AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKES  160 (428)
Q Consensus        82 ~~~~~~g~~~~Ai~~y~~al~~~p~-~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA  160 (428)
                      ...+..|++++|+..|+++++.+|+ ..++.++|.+|...|++++|+..|+++++++|++..++..++.++...+...++
T Consensus         4 ~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a   83 (264)
T d1zbpa1           4 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF   83 (264)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHH
Confidence            4567789999999999999999999 999999999999999999999999999999999999999999998888777776


Q ss_pred             HHHHHHHHhhC-CCcHHH----------HHHHHHHHHHHHHHHHhchhhhH
Q 014256          161 IEDSEFALRLE-PQNQEI----------KKQLAEVKSLYEKEVFQKASKTL  200 (428)
Q Consensus       161 ~~~~~~al~l~-P~~~~~----------~~~l~~a~~~~~~a~~~~~~~~~  200 (428)
                      ...+.....+. |.....          .++.++|...+.++....|....
T Consensus        84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~  134 (264)
T d1zbpa1          84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF  134 (264)
T ss_dssp             TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred             HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCc
Confidence            65554433332 322221          35677888888888888776654

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.49  E-value=2.7e-07  Score=85.01  Aligned_cols=123  Identities=13%  Similarity=-0.063  Sum_probs=99.5

Q ss_pred             cCCCCcchHHHHHhhhhcCCCCc-----hHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-----HHHHHHHHHHHHH
Q 014256           50 SYSRNYDPVSHISSSLMNEESTP-----DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-----AVAYANRAMAYLK  119 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~~~-----~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-----~~~~~nla~~~~~  119 (428)
                      ..+++..+...+.++........     ....+..+|..+...|++++|...+.+++...+.     ...+.++|.+++.
T Consensus       184 ~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~  263 (366)
T d1hz4a_         184 ARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQIL  263 (366)
T ss_dssp             HHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence            45666666666666655433211     2334677899999999999999999999988754     5678899999999


Q ss_pred             hcCHHHHHHHHHHHHh------cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 014256          120 LRRFQEAEDDCTEALN------LDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEP  172 (428)
Q Consensus       120 ~~~~~eA~~~~~~al~------l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P  172 (428)
                      +|++++|+..+++++.      ..|....++..+|.+|..+|++++|+..|++++.+.+
T Consensus       264 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~  322 (366)
T d1hz4a_         264 LGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN  322 (366)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence            9999999999999984      4466788999999999999999999999999998864

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.41  E-value=2.4e-06  Score=67.84  Aligned_cols=79  Identities=11%  Similarity=0.001  Sum_probs=64.2

Q ss_pred             CcHHHHHHHHHHHHHhc---CHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHH
Q 014256          105 PTAVAYANRAMAYLKLR---RFQEAEDDCTEALNLDDRYI-KAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQ  180 (428)
Q Consensus       105 p~~~~~~nla~~~~~~~---~~~eA~~~~~~al~l~p~~~-~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~  180 (428)
                      +...+.++.|.|+.+..   +.++|+..++.+++.+|.+. .++|.+|.+|.++|+|++|..+++++|+++|++..+...
T Consensus        33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L  112 (124)
T d2pqrb1          33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL  112 (124)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHH
Confidence            34778888888888754   56788999999998888764 788999999999999999999999999999999887544


Q ss_pred             HHH
Q 014256          181 LAE  183 (428)
Q Consensus       181 l~~  183 (428)
                      ...
T Consensus       113 ~~~  115 (124)
T d2pqrb1         113 KSM  115 (124)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            333

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.35  E-value=9.8e-07  Score=75.63  Aligned_cols=84  Identities=12%  Similarity=0.046  Sum_probs=73.2

Q ss_pred             cCCCCcchHHHHHhhhhcCCCCc--------------------hHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCc-HH
Q 014256           50 SYSRNYDPVSHISSSLMNEESTP--------------------DATSEKELGNECFKQKKFKEAIDCYSRSIALSPT-AV  108 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~~~--------------------~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~-~~  108 (428)
                      ..|++++|+..|.+++.+.+...                    ....+..+|.++...|+|++|+.++++++.++|. ..
T Consensus        23 ~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~  102 (179)
T d2ff4a2          23 AAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREP  102 (179)
T ss_dssp             HTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH
T ss_pred             HCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHH
Confidence            67888888888888888765432                    1123778999999999999999999999999999 99


Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHH
Q 014256          109 AYANRAMAYLKLRRFQEAEDDCTEA  133 (428)
Q Consensus       109 ~~~nla~~~~~~~~~~eA~~~~~~a  133 (428)
                      +|.+++.+|..+|++.+|+..|.++
T Consensus       103 ~~~~l~~al~~~Gr~~eAl~~y~~~  127 (179)
T d2ff4a2         103 LWTQLITAYYLSDRQSDALGAYRRV  127 (179)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            9999999999999999999999987

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.24  E-value=3.7e-06  Score=66.76  Aligned_cols=82  Identities=6%  Similarity=0.015  Sum_probs=70.5

Q ss_pred             chHHHHHHHHHHHHHh---cCHHHHHHHHHHHHccCCc--HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHH
Q 014256           72 PDATSEKELGNECFKQ---KKFKEAIDCYSRSIALSPT--AVAYANRAMAYLKLRRFQEAEDDCTEALNLDDRYIKAYSR  146 (428)
Q Consensus        72 ~~a~~~~~lg~~~~~~---g~~~~Ai~~y~~al~~~p~--~~~~~nla~~~~~~~~~~eA~~~~~~al~l~p~~~~a~~~  146 (428)
                      ......++.|+++.+.   .+..+|+.+++.++..+|.  ..+++++|.+|+++|+|++|...++++++++|+|..+...
T Consensus        33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L  112 (124)
T d2pqrb1          33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL  112 (124)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHH
Confidence            3455688999999975   5667999999999999986  5799999999999999999999999999999999988776


Q ss_pred             HHHHHHH
Q 014256          147 RATARKE  153 (428)
Q Consensus       147 lg~~~~~  153 (428)
                      .-.+...
T Consensus       113 ~~~Ie~~  119 (124)
T d2pqrb1         113 KSMVEDK  119 (124)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6655543

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.98  E-value=4.6e-05  Score=61.20  Aligned_cols=112  Identities=12%  Similarity=-0.000  Sum_probs=90.8

Q ss_pred             CCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCcHHHHHHHHHHHHH----hcCHHHHH
Q 014256           52 SRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLK----LRRFQEAE  127 (428)
Q Consensus        52 g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~~~~~~nla~~~~~----~~~~~eA~  127 (428)
                      .|+++|+.+|.++.+..  +..+  ...+|.  ....++++|+.+|.++.+.. ++.+++++|.+|+.    ..++++|+
T Consensus         7 kd~~~A~~~~~kaa~~g--~~~a--~~~l~~--~~~~~~~~a~~~~~~aa~~g-~~~a~~~Lg~~y~~g~~~~~d~~~A~   79 (133)
T d1klxa_           7 KDLKKAIQYYVKACELN--EMFG--CLSLVS--NSQINKQKLFQYLSKACELN-SGNGCRFLGDFYENGKYVKKDLRKAA   79 (133)
T ss_dssp             HHHHHHHHHHHHHHHTT--CTTH--HHHHHT--CTTSCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             cCHHHHHHHHHHHHHCC--Chhh--hhhhcc--ccccCHHHHHHHHhhhhccc-chhhhhhHHHhhhhccccchhhHHHH
Confidence            46788999999998775  3344  456664  34578999999999998754 37788999999987    56899999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCC
Q 014256          128 DDCTEALNLDDRYIKAYSRRATARKE----LGKLKESIEDSEFALRLEP  172 (428)
Q Consensus       128 ~~~~~al~l~p~~~~a~~~lg~~~~~----lg~~~eA~~~~~~al~l~P  172 (428)
                      .+|+++...  .++.+.+++|.+|..    ..++.+|+.+|+++.++..
T Consensus        80 ~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~  126 (133)
T d1klxa_          80 QYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  126 (133)
T ss_dssp             HHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence            999999875  578899999999987    4589999999999987753

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.77  E-value=0.00018  Score=64.01  Aligned_cols=94  Identities=16%  Similarity=0.214  Sum_probs=80.3

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHccCCcHHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 014256           77 EKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLK----LRRFQEAEDDCTEALNLDDRYIKAYSRRATARK  152 (428)
Q Consensus        77 ~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~~~~~~nla~~~~~----~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~  152 (428)
                      ++++|..++..|+|.+|+.+|+++.+.. +..+++++|.+|..    ..++..|...+..+...+  ++.+...+|.++.
T Consensus         5 ~~~lG~~~~~~~d~~~A~~~~~kAa~~g-~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--~~~a~~~l~~~~~   81 (265)
T d1ouva_           5 LVGLGAKSYKEKDFTQAKKYFEKACDLK-ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYY   81 (265)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc--ccchhhccccccc
Confidence            7899999999999999999999998764 37889999999998    679999999999987654  7788889998887


Q ss_pred             H----cCCHHHHHHHHHHHHhhCCC
Q 014256          153 E----LGKLKESIEDSEFALRLEPQ  173 (428)
Q Consensus       153 ~----lg~~~eA~~~~~~al~l~P~  173 (428)
                      .    .++...|...++.+....+.
T Consensus        82 ~~~~~~~~~~~a~~~~~~a~~~g~~  106 (265)
T d1ouva_          82 SGQGVSQNTNKALQYYSKACDLKYA  106 (265)
T ss_dssp             HTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred             cccccchhhHHHHHHHhhhhhhhhh
Confidence            5    46788899999998876553

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.38  E-value=0.00096  Score=59.06  Aligned_cols=113  Identities=12%  Similarity=0.122  Sum_probs=55.7

Q ss_pred             CCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHH----hcCHHHHHHHHHHHHccCCcHHHHHHHHHHHHH----hcC
Q 014256           51 YSRNYDPVSHISSSLMNEESTPDATSEKELGNECFK----QKKFKEAIDCYSRSIALSPTAVAYANRAMAYLK----LRR  122 (428)
Q Consensus        51 ~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~----~g~~~~Ai~~y~~al~~~p~~~~~~nla~~~~~----~~~  122 (428)
                      ..+.+.|...|..+....+.  .+  ...+|..+..    ......|+..+.+...... ...++++|.+|..    ..+
T Consensus        87 ~~~~~~a~~~~~~a~~~g~~--~a--~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~L~~~~~~~~~~~~~  161 (265)
T d1ouva_          87 SQNTNKALQYYSKACDLKYA--EG--CASLGGIYHDGKVVTRDFKKAVEYFTKACDLND-GDGCTILGSLYDAGRGTPKD  161 (265)
T ss_dssp             CCCHHHHHHHHHHHHHTTCH--HH--HHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHTSSSCCC
T ss_pred             chhhHHHHHHHhhhhhhhhh--hH--HHhhcccccCCCcccchhHHHHHHhhhhhcccc-cchhhhhhhhhccCCCcccc
Confidence            44555566666666554422  22  3344444443    3345555555555443221 4445555555554    234


Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhh
Q 014256          123 FQEAEDDCTEALNLDDRYIKAYSRRATARKE----LGKLKESIEDSEFALRL  170 (428)
Q Consensus       123 ~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~----lg~~~eA~~~~~~al~l  170 (428)
                      ...+...+..+.+  ..++.+++++|.++..    ..++++|+.+|+++.+.
T Consensus       162 ~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~  211 (265)
T d1ouva_         162 LKKALASYDKACD--LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL  211 (265)
T ss_dssp             HHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT
T ss_pred             cccchhhhhcccc--ccccccccchhhhcccCcccccchhhhhhhHhhhhcc
Confidence            4455555555443  3345555555555554    34555555555555554

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=96.87  E-value=0.0034  Score=49.63  Aligned_cols=85  Identities=14%  Similarity=0.117  Sum_probs=70.2

Q ss_pred             cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHH----hcCHHHHHHHHHHHHccCCcHHHHHHHHHHHHH----hc
Q 014256           50 SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFK----QKKFKEAIDCYSRSIALSPTAVAYANRAMAYLK----LR  121 (428)
Q Consensus        50 ~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~----~g~~~~Ai~~y~~al~~~p~~~~~~nla~~~~~----~~  121 (428)
                      ...++++|+.+|.++...+  +..+  .+.+|..|..    ..++.+|+.+|+++.+... +.+.+++|.+|..    ..
T Consensus        35 ~~~~~~~a~~~~~~aa~~g--~~~a--~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~-~~a~~~Lg~~y~~G~gv~~  109 (133)
T d1klxa_          35 SQINKQKLFQYLSKACELN--SGNG--CRFLGDFYENGKYVKKDLRKAAQYYSKACGLND-QDGCLILGYKQYAGKGVVK  109 (133)
T ss_dssp             TTSCHHHHHHHHHHHHHTT--CHHH--HHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHTSSSCC
T ss_pred             cccCHHHHHHHHhhhhccc--chhh--hhhHHHhhhhccccchhhHHHHHHHhhhhccCc-chHHHHHHHHHHcCCccCC
Confidence            3467889999999998764  4455  7799999987    5689999999999988643 7788899999988    56


Q ss_pred             CHHHHHHHHHHHHhcCCC
Q 014256          122 RFQEAEDDCTEALNLDDR  139 (428)
Q Consensus       122 ~~~eA~~~~~~al~l~p~  139 (428)
                      ++.+|+.+|++|.++...
T Consensus       110 d~~~A~~~~~~Aa~~G~~  127 (133)
T d1klxa_         110 NEKQAVKTFEKACRLGSE  127 (133)
T ss_dssp             CHHHHHHHHHHHHHTTCH
T ss_pred             CHHHHHHHHHHHHHCCCH
Confidence            899999999999887644

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=84.83  E-value=3.8  Score=36.76  Aligned_cols=126  Identities=13%  Similarity=0.100  Sum_probs=81.4

Q ss_pred             hhcCCCccc-cCCCCcchHHHHHhhhhcCCCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCcHHHHHHHHHHHHH
Q 014256           41 AKKPSPSGN-SYSRNYDPVSHISSSLMNEESTPDATSEKELGNECFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYLK  119 (428)
Q Consensus        41 a~~~~~~~y-~~g~~~~Ai~~~~~al~~~p~~~~a~~~~~lg~~~~~~g~~~~Ai~~y~~al~~~p~~~~~~nla~~~~~  119 (428)
                      -+..+|..+ +.|.|+.|...|...-.          +..+..++.+.++|..|.+...++    .....|.....+...
T Consensus        16 d~~~i~~~c~~~~lye~A~~lY~~~~d----------~~rl~~~~v~l~~~~~avd~~~k~----~~~~~~k~~~~~l~~   81 (336)
T d1b89a_          16 HIQQVGDRCYDEKMYDAAKLLYNNVSN----------FGRLASTLVHLGEYQAAVDGARKA----NSTRTWKEVCFACVD   81 (336)
T ss_dssp             -------------CTTTHHHHHHHTTC----------HHHHHHHHHTTTCHHHHHHHHHHH----TCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHCCCHHHHHHHHHhCCC----------HHHHHHHHHhhccHHHHHHHHHHc----CCHHHHHHHHHHHHh
Confidence            345566665 89999999999986421          445667889999999999987765    236677777777777


Q ss_pred             hcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 014256          120 LRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALRLEPQNQEIKKQLAEV  184 (428)
Q Consensus       120 ~~~~~eA~~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~a  184 (428)
                      .....-|.. +...+.++   +.-....-..+...|.+++.+..++.++.+++.+......+..+
T Consensus        82 ~~e~~la~i-~~~~~~~~---~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~l  142 (336)
T d1b89a_          82 GKEFRLAQM-CGLHIVVH---ADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAIL  142 (336)
T ss_dssp             TTCHHHHHH-TTTTTTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred             CcHHHHHHH-HHHHhhcC---HHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHH
Confidence            777655422 22223333   33444566778889999999999999999888887765554443