Citrus Sinensis ID: 014267

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------

MKAMQQDIKCDFLRLRMVRCHRELKLGKPISSFSHNSWQKVWHLYCEFGTKGLILELRHPGGTCFKGSTLQGTVEFRWNNLLRAPSLTMEREIEQFRVVISITPPVQAQYLLKCVPDRVTDDSGAMISDVILRLNGYRPQEGRWLSRTVLDHAGRECFVVRIRVGGGFWRRGGETPSAVKWEDRIIEIREGFWSYVAGSIGRAPEKVVGTATPKEPTAECQAAWDFSTGDELMISWESSSLTSGLKFALKNAASPDSLLVLLRGQKMQYQGREQSEVEKEAEEEDDEGFVTLVRFTDENPTGKATALLNWKLLVIELLPEEDAVLALLLCFSILRSVSEMRKEDVGSLLIRRRIKETKLGHRDWGSVNLHPSSLSSSSSITSPYIQPWYWNAKAVMAASTDNIRRPPAQNYSPAEGGDKLYKRGIIT

cccccccccccEEEEEEEccccccccccccccccccccEEEEEEEEEccccEEEEEEEccccccccccEEcEEEEEEcccccccccccHHccccEEEEEEEEcccccccEEEEEEcccccccccccHHHHHHHHcccccccccEEEEEEEEccccEEEEEEEEEccccccccccccccccccEEEEEEEEccEEEEcccccccccEEEEEcccccccHHccccEEEEccccEEEEEccccccccccEEEEcccccccEEEEEccEEEEEEccccccHHHccccccccccEEEEEEccccccccEEEEEEccEEEEEEcccccHHHHHHHHHHHHHHHHHHHcccccccEEEEEEccccccccccccEEEccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccc

ccccHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHEHHHcccEEEEEEEEccccccccccccccEEEEHHHHHccccccccccccEEEEEEEEcccccccHHHEccccccccccccHHHHHHHHHcccccccccEEEEEEEcccccEEEEEEEEEccccEEcccccccccccccEEEEEEcccccEEEccccccccEEEEEEccccccHHcEEEEEEccccEEEEEEEccccccccEEEEEEcccccccEEEEcccEEEEEEcccccccccccHHHcccEEEEEEEccccccccEEEEEEHEEEEEEEccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccccccEEEEcccccccccccccccccHHHHHHHHHHHcccccccccccEEEcccccccHHHHEEEEc

MKAMQQDIKCDFLRLRMVRCHRElklgkpissfshnsWQKVWHLYCEFGTKGLIlelrhpggtcfkgstlqgTVEFRWnnllrapsltmEREIEQFRVVISITPPVQAQYLlkcvpdrvtddsgaMISDVILRLngyrpqegrwLSRTVLDHAGRECFVVRIRVGggfwrrggetpsavkWEDRIIEIREGFWSYVAgsigrapekvvgtatpkeptaecqaawdfstgdELMISWESSSLTSGLKFAlknaaspdSLLVLLRGQKmqyqgreqsevekeaeeeddeGFVTLVRftdenptgkaTALLNWKLLVIELLPEEDAVLALLLCFSILRSVSEMRKEDVGSLLIRRRIKetklghrdwgsvnlhpsslsssssitspyiqpwywNAKAVMAAstdnirrppaqnyspaeggdklykrgiit

mkamqqdikcdflrLRMVRCHRELKlgkpissfshNSWQKVWHLYCEFGTKGLILELRHPGGTCFKGSTLQGTVEFRWNNLLRAPSLTMEREIEQFRVVISITPPVQAQYLLKCVPDRVTDDSGAMISDVILrlngyrpqegRWLSRTVLDHAGRECFVVRIrvgggfwrrggetpsavkwedrIIEIREGFWSYVAGSIGRAPEKVVGTATPKEPTAECQAAWDFSTGDELMISWESSSLTSGLKFALKNAASPDSLLVLLRGQKMQYQGREQsevekeaeeeddeGFVTLVRftdenptgkaTALLNWKLLVIELLPEEDAVLALLLCFSILrsvsemrkedvgsllirrriketklghrdwgsvnlhpsslsssssiTSPYIQPWYWNAKAVMAASTDNirrppaqnyspaeggdklykrgiit

MKAMQQDIKCDFLRLRMVRCHRELKLGKPISSFSHNSWQKVWHLYCEFGTKGLILELRHPGGTCFKGSTLQGTVEFRWNNLLRAPSLTMEREIEQFRVVISITPPVQAQYLLKCVPDRVTDDSGAMISDVILRLNGYRPQEGRWLSRTVLDHAGRECFVVRIRVGGGFWRRGGETPSAVKWEDRIIEIREGFWSYVAGSIGRAPEKVVGTATPKEPTAECQAAWDFSTGDELMISWESSSLTSGLKFALKNAASPDSLLVLLRGQKMQYQGReqsevekeaeeeddeGFVTLVRFTDENPTGKATALLNWKLLVIELLPEEDAVLALLLCFSILRSVSEMRKEDVGSLLIRRRIKETKLGHRDWGSVNLHPsslsssssitsPYIQPWYWNAKAVMAASTDNIRRPPAQNYSPAEGGDKLYKRGIIT

*******IKCDFLRLRMVRCHRELKLGKPISSFSHNSWQKVWHLYCEFGTKGLILELRHPGGTCFKGSTLQGTVEFRWNNLLRAPSLTMEREIEQFRVVISITPPVQAQYLLKCVPDRVTDDSGAMISDVILRLNGYRPQEGRWLSRTVLDHAGRECFVVRIRVGGGFWRRGGETPSAVKWEDRIIEIREGFWSYVAGSIGRAPEKVVGTA*****TAECQAAWDFSTGDELMISWESSSLTSGLKFALKNAA**DSLLVLL**************************FVTLVRFTDENPTGKATALLNWKLLVIELLPEEDAVLALLLCFSILRSVSEMRKEDVGSLLIRRRIKETKLGHRDWGSV*************TSPYIQPWYWNAKAVMA******************************

***********FLRLRMVRCHRELKLGKPISSFSHNSWQKVWHLYCEFGTKGLILEL****************VEFRWNNLLRAPSLTMEREIEQFRVVISITPPVQAQYLLKCVPDRVTDDSGAMISDVIL*********GRWLSRTVLDHAGRECFVVRIRVGGGF**********VKWEDRIIEIREGFWSYVAGSIGRAPEKVVGTATPKEPTAECQAAWDFSTGDELMISWESSSLTSGLKFALKNAASPDSLLVLLRGQKMQYQG***************EGFVTLVRFTDENPTGKATALLNWKLLVIELLPEEDAVLALLLCFSILRSVSEM**************************VNLHPSSLSSSSSITSPYIQPWYWNAKAVMA*********************KLYKRGII*

MKAMQQDIKCDFLRLRMVRCHRELKLGKPISSFSHNSWQKVWHLYCEFGTKGLILELRHPGGTCFKGSTLQGTVEFRWNNLLRAPSLTMEREIEQFRVVISITPPVQAQYLLKCVPDRVTDDSGAMISDVILRLNGYRPQEGRWLSRTVLDHAGRECFVVRIRVGGGFWRRGGETPSAVKWEDRIIEIREGFWSYVAGSIGRAPEKVVGTATPKEPTAECQAAWDFSTGDELMISWESSSLTSGLKFALKNAASPDSLLVLLRGQKM*******************EGFVTLVRFTDENPTGKATALLNWKLLVIELLPEEDAVLALLLCFSILRSVSEMRKEDVGSLLIRRRIKETKLGHRDWGSVNLH**********TSPYIQPWYWNAKAVMAASTDNIRRPPAQNYSPAEGGDKLYKRGIIT

****QQDIKCDFLRLRMVRCHRELKLGKPISSFSHNSWQKVWHLYCEFGTKGLILELRHPGGTCFKGSTLQGTVEFRWNNLLRAPSLTMEREIEQFRVVISITPPVQAQYLLKCVPDRVTDDSGAMISDVILRLNGYRPQEGRWLSRTVLDHAGRECFVVRIRVGGGFWRRGGETPSAVKWEDRIIEIREGFWSYVAGSIGRAPEKVVGTATPKEPTAECQAAWDFSTGDELMISWESSSLTSGLKFALKNAASPDSLLVLLRGQKMQYQGREQSE*EKEAEEEDDEGFVTLVRFTDENPTGKATALLNWKLLVIELLPEEDAVLALLLCFSILRSVSEMRKEDVGSLLIRRRIKETKLGHRDWGSVNLHPSSLSSSSSITSPYIQPWYWNAKAVMAASTDNIRRPPAQNYSPAEGGDKLYKRGIIT

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		427
296089715		797	unnamed protein product [Vitis vinifera]	0.990	0.530	0.705	1e-176
225450741		748	PREDICTED: uncharacterized protein LOC10	0.967	0.552	0.720	1e-175
224123024		777	predicted protein [Populus trichocarpa]	0.995	0.546	0.693	1e-171
357441787		772	hypothetical protein MTR_1g083540 [Medic	0.988	0.546	0.673	1e-169
449435984		747	PREDICTED: uncharacterized protein LOC10	0.960	0.548	0.672	1e-169
449485854		763	PREDICTED: uncharacterized protein LOC10	0.981	0.549	0.661	1e-169
255542804		439	conserved hypothetical protein [Ricinus	0.995	0.968	0.689	1e-164
356574969		762	PREDICTED: uncharacterized protein LOC10	0.964	0.540	0.682	1e-162
147839227		799	hypothetical protein VITISV_022465 [Viti	0.957	0.511	0.668	1e-161
297853488		753	hypothetical protein ARALYDRAFT_474787 [	0.939	0.532	0.579	1e-125

>gi\|296089715\|emb\|CBI39534.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score =  624 bits (1610), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 312/442 (70%), Positives = 359/442 (81%), Gaps = 19/442 (4%)

Query: 1   MKAMQQDIKCDFLRLRMVRCHRELKLGKPISSFSHNSWQKVWHLYCEFGTKGLILELRHP 60
           MK MQ+D+K  FLRLR+VRCHRELK+ KP SSFS +SW+K WHLYCEFGTKG++L+LR  
Sbjct: 358 MKVMQEDMKKKFLRLRVVRCHRELKMDKPFSSFSSDSWEKTWHLYCEFGTKGVVLDLRLC 417

Query: 61  GGTCFKGSTLQGTVEFRWNNLLRAPSLTMEREI-EQFRVVISITPPVQAQYLLKCVPDRV 119
           GG C KGS+ +  V   WN+LLR+PSLT+E ++ EQ RVV+SITPP QA YL KCVPDRV
Sbjct: 418 GGRCLKGSSSKDMVAVLWNDLLRSPSLTLESKVDEQVRVVVSITPPAQAPYLFKCVPDRV 477

Query: 120 TDDSGAMISDVILRLNGYRPQEGRWLSRTVLDHAGRECFVVRIRVGGGFWRRGGETPSAV 179
           TDDSGAMISDV+LR+N YRPQEGRWLSRTVLDHAGRECFVVR+RV GGFWRRGGETPSAV
Sbjct: 478 TDDSGAMISDVVLRMNSYRPQEGRWLSRTVLDHAGRECFVVRMRVAGGFWRRGGETPSAV 537

Query: 180 KWEDRIIEIREGFWSYVAGSIGRAPEKVVGTATPKEPTAECQAAWDFSTGDELMISWESS 239
           K EDRIIEIREG WSY+AG+IGR PEKVVGTATPKEP    ++AW FSTGDEL I W+ S
Sbjct: 538 KREDRIIEIREGSWSYLAGTIGRLPEKVVGTATPKEPPDHQKSAWCFSTGDELTIHWDLS 597

Query: 240 SLTSGLKFALKNAASPDSLLVLLRGQKMQYQGRE-QSEVEKEAEEEDD------------ 286
           S T+GL F+L+N   PDSL+ LL+G+KMQYQ ++  S+ EK  +  ++            
Sbjct: 598 SSTAGLNFSLQNQTCPDSLVKLLKGRKMQYQAKKFNSQKEKAKQNMNNGQEVDEEDDDDD 657

Query: 287 EGFVTLVRFTDENPTGKATALLNWKLLVIELLPEEDAVLALLLCFSILRSVSEMRKEDVG 346
           EGFVTLVRFT+ENPTG+ATALLNWKLLV+ELLPEEDAVLALLLC SIL+SVSEMRKEDVG
Sbjct: 658 EGFVTLVRFTEENPTGRATALLNWKLLVVELLPEEDAVLALLLCISILKSVSEMRKEDVG 717

Query: 347 SLLIRRRIKETKLGHRDWGSVNLHPSSLSSSSSITSPYIQPWYWNAKAVMAAS--TDNIR 404
           SLLIRRR+KE K G RDWGSV LHP   S SS I+ P++QPW+WNA AV AAS  TDN  
Sbjct: 718 SLLIRRRLKEAKQGTRDWGSVVLHP---SCSSDISLPHLQPWHWNAMAVTAASNGTDNFT 774

Query: 405 RPPAQNYSPAEGGDKLYKRGII 426
           + PA  YSP EGGDKLYKRGII
Sbjct: 775 KQPAFTYSPVEGGDKLYKRGII 796

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|225450741\|ref\|XP_002279203.1\| PREDICTED: uncharacterized protein LOC100266572 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224123024\|ref\|XP_002318975.1\| predicted protein [Populus trichocarpa] gi\|222857351\|gb\|EEE94898.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|357441787\|ref\|XP_003591171.1\| hypothetical protein MTR_1g083540 [Medicago truncatula] gi\|355480219\|gb\|AES61422.1\| hypothetical protein MTR_1g083540 [Medicago truncatula]	Back alignment and taxonomy information

>gi\|449435984\|ref\|XP_004135774.1\| PREDICTED: uncharacterized protein LOC101207151 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449485854\|ref\|XP_004157291.1\| PREDICTED: uncharacterized protein LOC101228905 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|255542804\|ref\|XP_002512465.1\| conserved hypothetical protein [Ricinus communis] gi\|223548426\|gb\|EEF49917.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|356574969\|ref\|XP_003555615.1\| PREDICTED: uncharacterized protein LOC100795865 [Glycine max]	Back alignment and taxonomy information

>gi\|147839227\|emb\|CAN65689.1\| hypothetical protein VITISV_022465 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|297853488\|ref\|XP_002894625.1\| hypothetical protein ARALYDRAFT_474787 [Arabidopsis lyrata subsp. lyrata] gi\|297340467\|gb\|EFH70884.1\| hypothetical protein ARALYDRAFT_474787 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		427
TAIR\|locus:2011821		752	AT1G56230 "AT1G56230" [Arabido	0.960	0.545	0.553	2.4e-115

TAIR\|locus:2011821 AT1G56230 "AT1G56230" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1137 (405.3 bits), Expect = 2.4e-115, P = 2.4e-115
 Identities = 239/432 (55%), Positives = 287/432 (66%)

Query:     2 KAMQQD-IKCDFLRLRMVRCHRELKLGKPISSFSHN-SWQKVWHLYCEFGTKGLILELR- 58
             KA Q + I   FLRLR+ RCHR+L+L K ++  S   SWQK WHLYCEFGT G ILE   
Sbjct:   333 KAEQNESIDRSFLRLRVARCHRKLQLDKKMTDLSSEASWQKAWHLYCEFGTLGFILESHC 392

Query:    59 -HPGGTCFKGSTLQGTVEFRWNNLLRAPSLTMEREI-EQFRVVISITPPVQAQYLLKCVP 116
                 G CFK    +G +EF WN+LLRA SL   R + +Q  V  S+TPPVQA YLL+ VP
Sbjct:   393 DRSRGICFKSGKPEGMIEFPWNDLLRAHSLASGRFLGKQVSVFASVTPPVQAPYLLRFVP 452

Query:   117 DRVTDDSGAMISDVILRLNGYRPQEGRWLSRTVLDHAGRECFVVRIRVGGGFWRRGGETP 176
             DRVTDDSGAMISD + R N +RPQEGRWL+RTVLDHAGRECFV+RIRVG G ++RGGE P
Sbjct:   453 DRVTDDSGAMISDSVQRTNNFRPQEGRWLTRTVLDHAGRECFVIRIRVGKGVFKRGGEVP 512

Query:   177 SAVKWEDRIIEIREGFWSYVAGSIGRAPEKVVGTATPKEPTAECQAAWDFSTGDELMISW 236
             S VK E+RI E+R G WSYV GSIG+AP KVVGT TPKEP  + +AAW+FSTGDEL I W
Sbjct:   513 SPVKSEERITEVRVGSWSYVEGSIGKAPAKVVGTVTPKEPMEDWEAAWEFSTGDELCIRW 572

Query:   237 ESSSLTSGLKFALKNAASPDSLLVLLRGQKMQYQGRXXXXXXXXXXXXXXXGFVTLVRFT 296
             +S    S L+   +N   P SL+ LL G++MQY+G                GFVT+VR T
Sbjct:   573 DSLGTISELRLYSRN---PGSLVRLLTGRRMQYKGEDEEDDE---------GFVTVVRST 620

Query:   297 DENPTGKATALLNWKLLVIELLPEEDAVLALLLCFSILRSVSEMRKEDVGSLLIRRRIKE 356
             +E+PT KATAL++WK   +E LPEEDAV  LLL  SILRSV+  R+EDVG LL+R+RI E
Sbjct:   621 EEDPTEKATALIDWKHQAVEFLPEEDAVFVLLLSVSILRSVTHKRREDVGKLLVRKRITE 680

Query:   357 TKLGHRDWGSVNLHPXXXXXXXXXXXPYIQPWYWNAKAVMAAS--TDNIRRP-PAQNYSP 413
                G RDWGSV +             PY++PWY N+  VMA        R P P  +YS 
Sbjct:   681 AT-GERDWGSV-IVDASSTNVSSSSSPYVEPWYRNSGKVMAMEEKAQVARYPYPVMSYSN 738

Query:   414 AEGGDKLYKRGI 425
              +GGD LYK  I
Sbjct:   739 VDGGDNLYKHVI 750


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.137   0.431    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      427       401   0.00098  117 3  11 22  0.37    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  629 (67 KB)
  Total size of DFA:  293 KB (2149 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  28.25u 0.11s 28.36t   Elapsed:  00:00:01
  Total cpu time:  28.25u 0.11s 28.36t   Elapsed:  00:00:01
  Start:  Fri May 10 11:12:57 2013   End:  Fri May 10 11:12:58 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00022690001	SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (771 aa)
		(Vitis vinifera)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		427
cd04042		121	C2A_MCTP_PRT C2 domain first repeat found in Multi	95.1
cd08678		126	C2_C21orf25-like C2 domain found in the Human chro	94.74
cd04044		124	C2A_Tricalbin-like C2 domain first repeat present	94.51
cd04013		146	C2_SynGAP_like C2 domain present in Ras GTPase act	93.32
cd04052		111	C2B_Tricalbin-like C2 domain second repeat present	92.35
cd04015		158	C2_plant_PLD C2 domain present in plant phospholip	92.27
cd04022		127	C2A_MCTP_PRT_plant C2 domain first repeat found in	92.07
cd04043		126	C2_Munc13_fungal C2 domain in Munc13 (mammalian un	91.65
cd04016		121	C2_Tollip C2 domain present in Toll-interacting pr	91.38
cd08400		126	C2_Ras_p21A1 C2 domain present in RAS p21 protein	90.89
cd08373		127	C2A_Ferlin C2 domain first repeat in Ferlin. Ferli	90.74
cd04033		133	C2_NEDD4_NEDD4L C2 domain present in the Human neu	90.68
cd08688		110	C2_KIAA0528-like C2 domain found in the Human KIAA	90.53
cd08391		121	C2A_C2C_Synaptotagmin_like C2 domain first and thi	90.38
cd08387		124	C2A_Synaptotagmin-8 C2A domain first repeat presen	90.17
cd08681		118	C2_fungal_Inn1p-like C2 domain found in fungal Ing	89.72
cd04050		105	C2B_Synaptotagmin-like C2 domain second repeat pre	89.39
cd04014		132	C2_PKC_epsilon C2 domain in Protein Kinase C (PKC)	89.17
cd08376		116	C2B_MCTP_PRT C2 domain second repeat found in Mult	89.06
cd04045		120	C2C_Tricalbin-like C2 domain third repeat present	88.61
cd08394		127	C2A_Munc13 C2 domain first repeat in Munc13 (mamma	87.48
cd08385		124	C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe	87.24
cd08682		126	C2_Rab11-FIP_classI C2 domain found in Rab11-famil	87.15
cd04051		125	C2_SRC2_like C2 domain present in Soybean genes Re	86.82
cd08409		137	C2B_Synaptotagmin-15 C2 domain second repeat prese	86.45
cd04019		150	C2C_MCTP_PRT_plant C2 domain third repeat found in	86.4
cd08375		136	C2_Intersectin C2 domain present in Intersectin. A	86.05
smart00239		101	C2 Protein kinase C conserved region 2 (CalB). Ca2	85.79
cd04041		111	C2A_fungal C2 domain first repeat; fungal group. C	85.68
cd00276		134	C2B_Synaptotagmin C2 domain second repeat present	85.54
PLN03008		868	Phospholipase D delta	84.59
cd04025		123	C2B_RasA1_RasA4 C2 domain second repeat present in	84.3
cd04031		125	C2A_RIM1alpha C2 domain first repeat contained in	83.86
cd00030		102	C2 C2 domain. The C2 domain was first identified i	83.75
cd04021		125	C2_E3_ubiquitin_ligase C2 domain present in E3 ubi	83.71
cd04049		124	C2_putative_Elicitor-responsive_gene C2 domain pre	82.94
cd08377		119	C2C_MCTP_PRT C2 domain third repeat found in Multi	82.92
PLN02270		808	phospholipase D alpha	81.86
cd08378		121	C2B_MCTP_PRT_plant C2 domain second repeat found i	81.5
cd08402		136	C2B_Synaptotagmin-1 C2 domain second repeat presen	80.78

>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)	Back alignment and domain information

Probab=95.10  E-value=0.093  Score=43.79  Aligned_cols=69  Identities=17%  Similarity=0.239  Sum_probs=51.8

Q ss_pred             cccccceEEEEEEeccCCcEEEEEeccCCCCccCceeeeeEEeechhhcCCCc----cchh--h---cccceeEEEeecC
Q 014267           34 SHNSWQKVWHLYCEFGTKGLILELRHPGGTCFKGSTLQGTVEFRWNNLLRAPS----LTME--R---EIEQFRVVISITP  104 (427)
Q Consensus        34 S~~~Wkk~~~fqCE~~TggLvlElr~~~~~~~k~sK~lG~~s~sw~dll~~~s----Ls~E--k---w~e~LRVaaSiTp  104 (427)
                      .+|.|.+...|.+......|.||+..+..  +.+...||.+.|+++++.....    |.+.  +   -.-.|.+.+++||
T Consensus        44 ~nP~Wne~f~f~v~~~~~~l~~~v~D~d~--~~~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~~~~~~~G~l~l~~~~~~  121 (121)
T cd04042          44 LNPVWDEKFTLPIEDVTQPLYIKVFDYDR--GLTDDFMGSAFVDLSTLELNKPTEVKLKLEDPNSDEDLGYISLVVTLTP  121 (121)
T ss_pred             CCCccceeEEEEecCCCCeEEEEEEeCCC--CCCCcceEEEEEEHHHcCCCCCeEEEEECCCCCCccCceEEEEEEEECC
Confidence            47899998888887557889999987755  4577899999999999984332    3332  1   1128999999987

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein

>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein	Back alignment and domain information

>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins	Back alignment and domain information

>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family	Back alignment and domain information

>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins	Back alignment and domain information

>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD)	Back alignment and domain information

>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset	Back alignment and domain information

>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group	Back alignment and domain information

>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip)	Back alignment and domain information

>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1)	Back alignment and domain information

>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin	Back alignment and domain information

>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)	Back alignment and domain information

>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone	Back alignment and domain information

>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins	Back alignment and domain information

>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8	Back alignment and domain information

>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins	Back alignment and domain information

>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins	Back alignment and domain information

>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon	Back alignment and domain information

>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)	Back alignment and domain information

>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins	Back alignment and domain information

>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins	Back alignment and domain information

>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10	Back alignment and domain information

>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I	Back alignment and domain information

>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins	Back alignment and domain information

>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15	Back alignment and domain information

>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset	Back alignment and domain information

>cd08375 C2_Intersectin C2 domain present in Intersectin	Back alignment and domain information

>smart00239 C2 Protein kinase C conserved region 2 (CalB)	Back alignment and domain information

>cd04041 C2A_fungal C2 domain first repeat; fungal group	Back alignment and domain information

>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin	Back alignment and domain information

>PLN03008 Phospholipase D delta	Back alignment and domain information

>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4	Back alignment and domain information

>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins	Back alignment and domain information

>cd00030 C2 C2 domain	Back alignment and domain information

>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase	Back alignment and domain information

>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene	Back alignment and domain information

>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)	Back alignment and domain information

>PLN02270 phospholipase D alpha	Back alignment and domain information

>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset	Back alignment and domain information

>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		427
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-07

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 50.6 bits (120), Expect = 7e-07
 Identities = 67/479 (13%), Positives = 128/479 (26%), Gaps = 140/479 (29%)

Query: 1   MKAMQQDIKC----DFLRLRMVRCHRELK--LGKPISSFSHNSWQKVWHLYCEFGTKGLI 54
             A   +  C    D  +   +    E+   +         ++      L+        +
Sbjct: 26  EDAFVDNFDCKDVQDMPK--SILSKEEIDHIIMSK------DAVSGTLRLF------WTL 71

Query: 55  LELRHPGGTCFKGSTLQGTVEF---RWNNLLRAPSLTMEREIEQFRVVISITPPVQAQYL 111
           L  +      F    L+   +F         R PS+     IEQ R  +     V A+Y 
Sbjct: 72  LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ-RDRLYNDNQVFAKYN 130

Query: 112 LKCVPDRVTDDSGAMISDVILRLNGYRPQEG-----------RWLSRTVLDHAGRECFVV 160
           +              +   +L L   RP +             W++  V      +C   
Sbjct: 131 V-SRLQPYLK-----LRQALLEL---RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCK-- 179

Query: 161 RIRVGGGFWRRGGETPSAVKWEDRIIEIREGFWSYVAGSIGRAPEKVVGTATPKEPTAEC 220
                  FW       S     + ++E+ +     +  +                     
Sbjct: 180 --MDFKIFWLNLKNCNS----PETVLEMLQKLLYQIDPNWTSRS---------------- 217

Query: 221 QAAWDFSTGDELMISWESSSLTSGLKFALKNAASPDSLLVLLRGQKMQYQGREQSEVEKE 280
               D S+  +L I      + + L+  LK+    + LLVL                   
Sbjct: 218 ----DHSSNIKLRIHS----IQAELRRLLKSKPYENCLLVL------------------- 250

Query: 281 AEEEDD-------EGF----VTLVRFTDENPTGKATALLNWKLLVIELLP--EEDAVLAL 327
                +         F      L+    +  T   +A     + +         D V +L
Sbjct: 251 ----LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306

Query: 328 LL-CFSILRSVSEMRKEDVGSL-----LIRRRIKETKLGHRD-WGSVNLHPSSLSSSSSI 380
           LL          ++ +E + +      +I   I++  L   D W  VN    +    SS+
Sbjct: 307 LLKYLDC--RPQDLPREVLTTNPRRLSIIAESIRD-GLATWDNWKHVNCDKLTTIIESSL 363

Query: 381 ---TSPYIQPWYWNAKAVMAASTDNIRRPPAQ----------NYSPAEGGDKLYKRGII 426
                   +  +    +V   S  +I   P                    +KL+K  ++
Sbjct: 364 NVLEPAEYRKMFDRL-SVFPPSA-HI---PTILLSLIWFDVIKSDVMVVVNKLHKYSLV 417

PyMOL of 1vt4

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		427
3b7y_A		153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	94.15
2dmh_A		140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	94.11
3kwu_A		148	MUNC13-1; calcium binding protein, phospholipid bi	93.19
1gmi_A		136	Protein kinase C, epsilon type; PKC, C2 domain, X-	92.96
1wfj_A		136	Putative elicitor-responsive gene; C2 domain, rike	92.58
3m7f_B		176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	92.26
1rlw_A		126	Phospholipase A2, CALB domain; hydrolase, C2 domai	91.88
2ep6_A		133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	89.79
3rdl_A		137	Protein kinase C alpha type; protein kinase PKC, t	87.1
2fk9_A		157	Protein kinase C, ETA type; ATP-binding, metal-bin	86.25
1rsy_A		152	Synaptotagmin I; calcium/phospholipid binding prot	85.38
1a25_A		149	CALB, protein kinase C (beta); calcium++/phospholi	85.23
2dmg_A		142	KIAA1228 protein; beta-sandwich, structural genomi	85.23
2d8k_A		141	Synaptotagmin VII; exocytosis, calcium binding, ly	85.03
1v27_A		141	Regulating synaptic membrane exocytosis protein 2;	83.71
2bwq_A		129	Regulating synaptic membrane exocytosis protein 2;	83.49
1tjx_A		159	Similar to synaptotagmini/P65; C2B domain, calcium	82.5
3f04_A		143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	82.45
2q3x_A		171	Regulating synaptic membrane exocytosis protein 1;	80.45

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A	Back alignment and structure

Probab=94.15  E-value=0.35  Score=39.93  Aligned_cols=50  Identities=12%  Similarity=0.175  Sum_probs=42.2

Q ss_pred             cccccceEEEEEEeccCCcEEEEEeccCCCCccCceeeeeEEeechhhcCCC
Q 014267           34 SHNSWQKVWHLYCEFGTKGLILELRHPGGTCFKGSTLQGTVEFRWNNLLRAP   85 (427)
Q Consensus        34 S~~~Wkk~~~fqCE~~TggLvlElr~~~~~~~k~sK~lG~~s~sw~dll~~~   85 (427)
                      .+|.|.....|........|.|+|..+..  +.+...||.+.|++++|....
T Consensus        69 ~nP~wne~f~f~v~~~~~~l~~~V~d~d~--~~~d~~iG~~~i~l~~l~~~~  118 (153)
T 3b7y_A           69 LNPKWNEEILFRVHPQQHRLLFEVFDENR--LTRDDFLGQVDVPLYPLPTEN  118 (153)
T ss_dssp             SSCCCCEEEEEEECTTTCEEEEEEEECCS--SSCCEEEEEEEEECCSCCBCC
T ss_pred             CCCCCCCEEEEEecCCCCEEEEEEEECCC--CcCCCeeEEEEEEHHHcccCC
Confidence            57899999899888777789999987754  567889999999999998765

PyMOL of 3b7y

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*	Back alignment and structure

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1	Back alignment and structure

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2	Back alignment and structure

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}	Back alignment and structure

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1	Back alignment and structure

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1	Back alignment and structure

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}	Back alignment and structure

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2	Back alignment and structure

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2	Back alignment and structure

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2	Back alignment and structure

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2	Back alignment and structure

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*	Back alignment and structure

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*	Back alignment and structure

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		427
d1gmia_		136	Domain from protein kinase C epsilon {Rat (Rattus	96.65
d1wfja_		136	C2 domain protein At1g63220 {Thale cress (Arabidop	94.37
d2cjta1		128	Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId:	93.7
d1rlwa_		126	Domain from cytosolic phospholipase A2 {Human (Hom	93.02
d1rsya_		143	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	91.22
d2ep6a1		126	Multiple C2 and transmembrane domain-containing pr	88.19
d1dqva1		130	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	87.4
d1uowa_		157	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	87.23
d1wfma_		138	Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9	86.74

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]}	Back information, alignment and structure

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=96.65  E-value=0.0036  Score=50.51  Aligned_cols=90  Identities=12%  Similarity=0.162  Sum_probs=66.3

Q ss_pred             cceeeeeehhhhhccccCCccccccccccceEEEEEEeccCCcEEEEEeccCCCCccCceeeeeEEeechhhcCCCccch
Q 014267           10 CDFLRLRMVRCHRELKLGKPISSFSHNSWQKVWHLYCEFGTKGLILELRHPGGTCFKGSTLQGTVEFRWNNLLRAPSLTM   89 (427)
Q Consensus        10 ~~f~rlr~~~~~~~lkld~~~~~~S~~~Wkk~~~fqCE~~TggLvlElr~~~~~~~k~sK~lG~~s~sw~dll~~~sLs~   89 (427)
                      +-|+++++=..+ ..+ -+-+..-.+|.|.+...|.++. ...|.|+|..+..  +.+.+++|.++|++.+++.......
T Consensus        39 DPYv~v~l~~~~-~~~-T~~~~~t~~P~Wne~f~f~v~~-~~~l~i~V~d~~~--~~~d~~iG~~~i~l~~l~~~~~~~~  113 (136)
T d1gmia_          39 DPYIALNVDDSR-IGQ-TATKQKTNSPAWHDEFVTDVCN-GRKIELAVFHDAP--IGYDDFVANCTIQFEELLQNGSRHF  113 (136)
T ss_dssp             CEEEEEEETTEE-EEE-CCCCSSCSSCEEEEEEEEEEEE-ECEEEEEEEECCS--SSSCEEEEEEEEEHHHHTSTTCSEE
T ss_pred             CcEEEEEeCCCc-CcE-eeEEcCCCCccCccEEEEEEec-CCceEEEEEEecC--CCCceeEEEEEEEHHHhhhcCCcce
Confidence            457777772211 011 1223334678999999999986 6788899987654  5677899999999999999888778


Q ss_pred             hhccc-----ceeEEEeecC
Q 014267           90 EREIE-----QFRVVISITP  104 (427)
Q Consensus        90 Ekw~e-----~LRVaaSiTp  104 (427)
                      +.|++     .++|.+.+||
T Consensus       114 ~~w~~L~p~G~v~l~v~~~~  133 (136)
T d1gmia_         114 EDWIDLEPEGKVYVIIDLSG  133 (136)
T ss_dssp             EEEEECBSSCEEEEEEEEEE
T ss_pred             eEEEeCCCCcEEEEEEEEEe
Confidence            88998     7888888875

PyMOL of d1gmia_

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure