Citrus Sinensis ID: 014286

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------
Protein Sequence
MWGRQREASMMYKRTSSRDRSSTFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQEIEIALLPQE
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHccccEEEcccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHcccHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccHHHHHcccccHHHHHHHHHHHHHHHccccHHHHccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccHEEEEEEEEHHHHHHHHccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEHEEEccEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccHHHHHcccHHHHHHHHHHHHHHHHHHcccEEEEEcHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccEEEEHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHcccc
Coil and Loop (DISEMBL)
mwgrqreasmmykrtssrdrsstfdveeTTALVQNgteventnpswklsFPHVLVATLSSFLFGYhlgvvneplesisldlgfngntLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVvgtgmglgPTVAALYVtesphwlykkgrTAEAEAEFEKLLGGSHVKSSLAelskldrgddgdivKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAAsssyipgsasLYLSVGGMLMFVLTFAlgagpvpslllpeifpSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQEIEIALLPQE
Flexible Loop (DISEMBL)
mwgrqreasmmykrtssrdrsstfdvEETTALvqngteventnpsWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTESPHWLYKKGRTAEAEAEFEKllggshvksslaelskldrgddgDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVEtkgkslqeieiallpqe
Low Complexity Region (SEG)
MWGRQREASMMYKrtssrdrsstFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGllflrlleqlgpqllYSIFGTFCLMAVAFVKRNVVETKGKSLQEIEIALLPQE
Disordered region (IsUnstruct)
******************************************NPSWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTESPHWLYKKGRTAEAEAEFEKLL*****************GDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQEIEI******
Disordered Region (DISOPRED)
************************************************SFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSL*******************LLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQEIEIAL****
Disordered Region (DISEMBL)
**************************EETTALVQNGTEVENTNPSWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQEIEIALLPQE
Disordered Region (DISPRO)
******************************************NPSWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQEIEIAL****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MWGRQREASMMYKRTSSRDRSSTFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQEIEIALLPQE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	427	2.2.26 [Sep-21-2011]
Q9FYG3	493	Probable plastidic glucos	yes	no	0.990	0.858	0.630	1e-162
Q2V4B9	495	Probable plastidic glucos	no	no	0.962	0.830	0.574	1e-134
Q0WVE9	524	Probable plastidic glucos	no	no	0.885	0.721	0.389	2e-79
Q56ZZ7	546	Plastidic glucose transpo	no	no	0.955	0.747	0.372	9e-69
P46333	461	Probable metabolite trans	yes	no	0.843	0.780	0.289	8e-35
B3MG58	866	Facilitated trehalose tra	N/A	no	0.763	0.376	0.284	5e-32
A9ZSY3	505	Facilitated trehalose tra	N/A	no	0.695	0.588	0.291	1e-31
Q291H8	868	Facilitated trehalose tra	yes	no	0.763	0.375	0.286	2e-31
B4GAP7	869	Facilitated trehalose tra	N/A	no	0.763	0.375	0.286	2e-31
B4HNS1	488	Facilitated trehalose tra	N/A	no	0.751	0.657	0.269	2e-31

>sp|Q9FYG3|PLST2_ARATH Probable plastidic glucose transporter 2 OS=Arabidopsis thaliana GN=At1g67300 PE=2 SV=1

 Score =  570 bits (1470), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 312/495 (63%), Positives = 367/495 (74%), Gaps = 72/495 (14%)

Query: 1   MWGRQREASMMYKRTSSRDRSSTFDVEETTALVQNG--TEVENTNPSWKLSFPHVLVATL 58
           M G QRE S MYKRTSSRD S   DVE+++ L++N    E+E TNPSWK S PHVLVAT+
Sbjct: 1   MLGLQRETSSMYKRTSSRDYSPMIDVEDSSGLLENDVDNEMETTNPSWKCSLPHVLVATI 60

Query: 59  SSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRR 118
           SSFLFGYHLGVVNEPLESIS DLGF+G+TLAEGLVVS+CLGGAF+GS  SG +ADG GRR
Sbjct: 61  SSFLFGYHLGVVNEPLESISSDLGFSGDTLAEGLVVSVCLGGAFLGSLFSGGVADGFGRR 120

Query: 119 RAFQLCALPMIIGASISATTRNLIGMLL-------------------------------- 146
           RAFQ+CALPMI+GA +S  + +L  MLL                                
Sbjct: 121 RAFQICALPMILGAFVSGVSNSLAVMLLGRFLVGTGMGLGPPVAALYVTEVSPAFVRGTY 180

Query: 147 GRFV-VGTGMGLGPTVAALYV--------------------------------TESPHWL 173
           G F+ + T +GL   +AAL++                                 ESP WL
Sbjct: 181 GSFIQIATCLGL---MAALFIGIPVHNITGWWRVCFWLSTIPAALLALGMFLCAESPQWL 237

Query: 174 YKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLD--RGDDGDIVKFEELLYGRHFRVVFIG 231
           +K+G+ AEAEAEFE+LLGGSHVK+++AEL KLD  + D+ D+V   ELLYGRH RVVFIG
Sbjct: 238 FKQGKIAEAEAEFERLLGGSHVKTAMAELYKLDLDKTDEPDVVSLSELLYGRHSRVVFIG 297

Query: 232 STLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKAL 291
           STLFALQQLSGINA+FYFSS+VFKSAG+ S L N+FVG++NLLGSV+AMVLMDK+GRK L
Sbjct: 298 STLFALQQLSGINAVFYFSSTVFKSAGVPSDLGNIFVGVSNLLGSVIAMVLMDKVGRKLL 357

Query: 292 LQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFP 351
           L WSF  MA +MA+QV A+SSY+P  ++L LSVGG L+FVLTFALGAGPVP LLLPEIFP
Sbjct: 358 LLWSFIGMAAAMALQVGATSSYLPHFSALCLSVGGTLVFVLTFALGAGPVPGLLLPEIFP 417

Query: 352 SRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVET 411
           SRIRAKAMA CMSVHWVINFFVGLLFLRLLE+LGP+LLYS+F TFCLMAV FVKRNV+ET
Sbjct: 418 SRIRAKAMAFCMSVHWVINFFVGLLFLRLLEKLGPRLLYSMFSTFCLMAVMFVKRNVIET 477

Query: 412 KGKSLQEIEIALLPQ 426
           KGK+LQEIEI+LL +
Sbjct: 478 KGKTLQEIEISLLAK 492

May be involved in the efflux of glucose towards the cytosol.
Arabidopsis thaliana (taxid: 3702)

>sp|Q2V4B9|PLST3_ARATH Probable plastidic glucose transporter 3 OS=Arabidopsis thaliana GN=At1g79820 PE=2 SV=2

 Score =  478 bits (1231), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 273/475 (57%), Positives = 324/475 (68%), Gaps = 64/475 (13%)

Query: 13  KRTSSRDRSSTFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSSFLFGYHLGVVNE 72
           KR  S++  S  D  ET   +  GT  +  NPSWK S PHVLVA+L+S LFGYHLGVVNE
Sbjct: 18  KRVPSKEFLSALDKAETAVRLPTGTGKDCGNPSWKRSLPHVLVASLTSLLFGYHLGVVNE 77

Query: 73  PLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGA 132
            LESIS+DLGF+GNT+AEGLVVS CLGGAFIGS  SG +ADGVGRRRAFQL ALPMI+GA
Sbjct: 78  TLESISIDLGFSGNTIAEGLVVSTCLGGAFIGSLFSGLVADGVGRRRAFQLSALPMIVGA 137

Query: 133 SISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTE-SPHWLYKKGRTAEAEAEFEKLLG 191
           S+SA+T +L+GMLLGRF+VG GMG+GP+V ALYVTE SP ++     ++   A    LLG
Sbjct: 138 SVSASTESLMGMLLGRFLVGIGMGIGPSVTALYVTEVSPAYVRGTYGSSTQIATCIGLLG 197

Query: 192 ----GSHVKSSLA--------------------ELS--------KLDRGDDGDIVKFEEL 219
               G   K +L                     EL         K  R  + + V FE+L
Sbjct: 198 SLFAGIPAKDNLGWWRICFWISTVPAAMLAVFMELCVESPQWLFKRGRAAEAEAV-FEKL 256

Query: 220 L------------------------------YGRHFRVVFIGSTLFALQQLSGINAIFYF 249
           L                              +GR FRVVFIGSTLFALQQLSGINA+FYF
Sbjct: 257 LGGSYVKAAMAELVKSDRGDDADSAKLSELLFGRSFRVVFIGSTLFALQQLSGINAVFYF 316

Query: 250 SSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAA 309
           SS+VFK AG+ S  AN+ VG+ NLLGS VA+VLMDKLGRK LL  SF  MAVS+ +Q  A
Sbjct: 317 SSTVFKKAGVPSASANICVGVCNLLGSTVAVVLMDKLGRKVLLIGSFAGMAVSLGLQAIA 376

Query: 310 SSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVI 369
            +S      +L+LSVGGML+FVL+FA GAGPVPSLLL EI P R+RA A+AVC++VHWVI
Sbjct: 377 YTSLPSPFGTLFLSVGGMLLFVLSFATGAGPVPSLLLSEICPGRLRATALAVCLAVHWVI 436

Query: 370 NFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQEIEIALL 424
           NFFVGLLFLR+LEQLG  LL +IFG FC++AV FV++NVVETKGKSLQEIEI+LL
Sbjct: 437 NFFVGLLFLRMLEQLGSVLLNAIFGFFCVVAVIFVQKNVVETKGKSLQEIEISLL 491

May be involved in the efflux of glucose towards the cytosol.

Arabidopsis thaliana (taxid: 3702)

>sp|Q0WVE9|PLST1_ARATH Probable plastidic glucose transporter 1 OS=Arabidopsis thaliana GN=At1g05030 PE=2 SV=2

 Score =  296 bits (758), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 172/442 (38%), Positives = 252/442 (57%), Gaps = 64/442 (14%)

Query: 46  WKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGS 105
           W  +FPHV VA++++FLFGYH+GV+N P+ SI+ +LGF GN++ EGLVVS+ + GAFIGS
Sbjct: 76  WLSAFPHVSVASMANFLFGYHIGVMNGPIVSIARELGFEGNSILEGLVVSIFIAGAFIGS 135

Query: 106 TLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALY 165
            ++G + D  G RR FQ+  +P+I+GA +SA   +L  +L GRF+VG G+G+   +  +Y
Sbjct: 136 IVAGPLVDKFGYRRTFQIFTIPLILGALVSAQAHSLDEILCGRFLVGLGIGVNTVLVPIY 195

Query: 166 VTE----------------------------------SPHW------------------- 172
           ++E                                   PHW                   
Sbjct: 196 ISEVAPTKYRGSLGTLCQIGTCLGIIFSLLLGIPAEDDPHWWRTMLYVASMPGFLLALGM 255

Query: 173 ---------LYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDI-VKFEELLYG 222
                    L K GR  +A+     + GGS V+ ++ +   + +    ++  ++ ELL  
Sbjct: 256 QFAVESPRWLCKVGRLDDAKVVIRNIWGGSEVEKAVEDFQSVMKNSGSNLNSRWLELLDK 315

Query: 223 RHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGL-ANVFVGIANLLGSVVAMV 281
            H RV FIG +LF LQQ +GIN + YFSS  F++ G++SG  A+++VG+ N  G++ A  
Sbjct: 316 PHSRVAFIGGSLFVLQQFAGINGVLYFSSLTFQNVGITSGAQASLYVGVTNFAGALCASY 375

Query: 282 LMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPV 341
           L+DK GRK LL  S+  MAVSM + V A    +    S  LS+ G LM++ +FA+GAGPV
Sbjct: 376 LIDKQGRKKLLIGSYLGMAVSMFLIVYAVGFPLDEDLSQSLSILGTLMYIFSFAIGAGPV 435

Query: 342 PSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAV 401
             L++PE+  +R R K M    SVHWV NF VGL FL L+E+ G   +Y+ FG+  L+A 
Sbjct: 436 TGLIIPELSSNRTRGKIMGFSFSVHWVSNFLVGLFFLDLVEKYGVGTVYASFGSVSLLAA 495

Query: 402 AFVKRNVVETKGKSLQEIEIAL 423
           AF     VETKG+SL+EIE++L
Sbjct: 496 AFSHLFTVETKGRSLEEIELSL 517

May be involved in the efflux of glucose towards the cytosol.

Arabidopsis thaliana (taxid: 3702)

>sp|Q56ZZ7|PLST4_ARATH Plastidic glucose transporter 4 OS=Arabidopsis thaliana GN=At5g16150 PE=1 SV=2

 Score =  261 bits (666), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 178/478 (37%), Positives = 253/478 (52%), Gaps = 70/478 (14%)

Query: 9   SMMYKRTSSRDRSSTFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSSFLFGYHLG 68
           S +  R+     SS  D EE   L   G              P V VA L + LFGYHLG
Sbjct: 72  SSVKARSVRAQASSDGDEEEAIPLRSEGKSSGTV-------LPFVGVACLGAILFGYHLG 124

Query: 69  VVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQL----- 123
           VVN  LE ++ DLG   NT+ +G +VS  L GA +GS   G +AD  GR R FQL     
Sbjct: 125 VVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGALADKFGRTRTFQLDAIPL 184

Query: 124 ------CALP-----MIIG-------------------ASISATT-RNLIGM-------- 144
                 CA       MI+G                   + IS T  R  +G         
Sbjct: 185 AIGAFLCATAQSVQTMIVGRLLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICI 244

Query: 145 -LLGRFVVGTGMGLGP-----------------TVAALYVTESPHWLYKKGRTAEAEAEF 186
            +L   + G  +   P                  +   +  ESP WL ++G+ +EAE   
Sbjct: 245 GILAALIAGLPLAANPLWWRTMFGVAVIPSVLLAIGMAFSPESPRWLVQQGKVSEAEKAI 304

Query: 187 EKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAI 246
           + L G   V   + +LS   +G       + +L   R+++VV +G+ LF  QQL+GINA+
Sbjct: 305 KTLYGKERVVELVRDLSASGQGSSEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAV 364

Query: 247 FYFSSSVFKSAGLSSGLA-NVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAI 305
            Y+S+SVF+SAG+ S +A +  VG +N+ G+ VA  LMDK+GRK+LL  SF  MA+SM +
Sbjct: 365 VYYSTSVFRSAGIQSDVAASALVGASNVFGTAVASSLMDKMGRKSLLLTSFGGMALSMLL 424

Query: 306 QVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSV 365
              + +     + S  L+V G +++VL+F+LGAGPVP+LLLPEIF SRIRAKA+A+ + +
Sbjct: 425 LSLSFTWKALAAYSGTLAVVGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGM 484

Query: 366 HWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQEIEIAL 423
           HW+ NF +GL FL ++ + G   +Y  F   C++AV ++  NVVETKG+SL+EIE+AL
Sbjct: 485 HWISNFVIGLYFLSVVTKFGISSVYLGFAGVCVLAVLYIAGNVVETKGRSLEEIELAL 542

May be involved in the efflux of glucose towards the cytosol.

Arabidopsis thaliana (taxid: 3702)

>sp|P46333|CSBC_BACSU Probable metabolite transport protein CsbC OS=Bacillus subtilis (strain 168) GN=csbC PE=1 SV=3

 Score =  148 bits (374), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 125/432 (28%), Positives = 205/432 (47%), Gaps = 72/432 (16%)

Query: 58  LSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGR 117
           L   L+GY  GV++  L  I+ D+     TL EGLVVSM L GA  GS LSG  +D  GR
Sbjct: 16  LGGLLYGYDTGVISGALLFINNDIPLT--TLTEGLVVSMLLLGAIFGSALSGTCSDRWGR 73

Query: 118 RRAFQLCALPMIIGASISA---------TTRNLIGMLLG------------------RFV 150
           R+   + ++  IIGA   A          +R ++G+ +G                  R  
Sbjct: 74  RKVVFVLSIIFIIGALACAFSQTIGMLIASRVILGLAVGGSTALVPVYLSEMAPTKIRGT 133

Query: 151 VGT------------------------------GMGLGPTVAAL----YVTESPHWLYKK 176
           +GT                              G+   P V  L    ++ ESP WL K+
Sbjct: 134 LGTMNNLMIVTGILLAYIVNYLFTPFEAWRWMVGLAAVPAVLLLIGIAFMPESPRWLVKR 193

Query: 177 GRTAEAEAEFEKLLGGSHVKSSLA-ELSKLDRGDDGDIVKFEELLYGRHFR-VVFIGSTL 234
           G    +E E  +++  +H    +  EL+++ +G+         +L  +  R ++ IG  L
Sbjct: 194 G----SEEEARRIMNITHDPKDIEMELAEMKQGEAEKKETTLGVLKAKWIRPMLLIGVGL 249

Query: 235 FALQQLSGINAIFYFSSSVFKSAGL---SSGLANVFVGIANLLGSVVAMVLMDKLGRKAL 291
              QQ  GIN + Y++ ++F  AGL   +S L  + +GI N++  + AM+L+D++GRK L
Sbjct: 250 AIFQQAVGINTVIYYAPTIFTKAGLGTSASALGTMGIGILNVIMCITAMILIDRVGRKKL 309

Query: 292 LQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFP 351
           L W    + +S+A       +    +++ +++V  + ++++ +    GPV  +L+PE+FP
Sbjct: 310 LIWGSVGITLSLAALSGVLLTLGLSASTAWMTVVFLGVYIVFYQATWGPVVWVLMPELFP 369

Query: 352 SRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVET 411
           S+ R  A      V    N  V L+F  +L  +G   ++ +F   CL++  F    V ET
Sbjct: 370 SKARGAATGFTTLVLSAANLIVSLVFPLMLSAMGIAWVFMVFSVICLLSFFFAFYMVPET 429

Query: 412 KGKSLQEIEIAL 423
           KGKSL+EIE +L
Sbjct: 430 KGKSLEEIEASL 441

Could serve either a nutritional or an osmotic protection function.

Bacillus subtilis (strain 168) (taxid: 224308)

>sp|B3MG58|TRET1_DROAN Facilitated trehalose transporter Tret1 OS=Drosophila ananassae GN=Tret1 PE=3 SV=2

 Score =  139 bits (349), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 104/366 (28%), Positives = 178/366 (48%), Gaps = 40/366 (10%)

Query: 88  LAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGML-- 145
           +A  + V+M L G F+     G  +            +LP+ +G ++    R  +G+L  
Sbjct: 493 IACAVNVAMVLAGRFLAGFCVGIAS-----------LSLPVYLGETVQPEVRGTLGLLPT 541

Query: 146 -------LGRFVVGTGMG------LGPTVAALY------VTESPHWLYKKGRTAEAEAEF 186
                  L  FV GT M       LG  +   +      + E+P W   +GR   A    
Sbjct: 542 AFGNIGILLCFVAGTYMDWSMLAFLGAALPVPFLVLMFLIPETPRWFVSRGREERARKAL 601

Query: 187 EKLLGG-SHVKSSLAEL--SKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGI 243
             L G  + V+  L  L  S+ D    G      ELL   +F+ + I   L   QQLSGI
Sbjct: 602 SWLRGKEADVEPELKGLMRSQADADRQGTQNTMLELLKRSNFKPLSISLGLMFFQQLSGI 661

Query: 244 NAIFYFSSSVFKSAG--LSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAV 301
           NA+ +++ S+FK AG  +   +  + VG+ N L + +A +L+D+ GRK LL  S  +M +
Sbjct: 662 NAVIFYTVSIFKDAGSTIDGNVCTIIVGVVNFLATFIATLLIDRAGRKILLYVSNIAMII 721

Query: 302 SMAI--QVAASSSYIPGSASL-YLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKA 358
           ++ +        ++ P  + L +L +   ++++L F+LG GP+P L++ EI P++IR  A
Sbjct: 722 TLFVLGGFFYCKAHGPDVSHLGWLPLSCFVIYILGFSLGFGPIPWLMMGEILPAKIRGSA 781

Query: 359 MAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQE 418
            +V  + +W   F V   F  +++ +G    + +FG  C + + FV   V ET+GK+L++
Sbjct: 782 ASVATAFNWTCTFVVTKTFQDMIDVMGAHGAFWLFGAICFIGLFFVILYVPETQGKTLED 841

Query: 419 IEIALL 424
           IE  ++
Sbjct: 842 IERKMM 847

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila ananassae (taxid: 7217)

>sp|A9ZSY3|TRET1_BOMMO Facilitated trehalose transporter Tret1 OS=Bombyx mori GN=Tret1 PE=1 SV=1

 Score =  137 bits (345), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 96/329 (29%), Positives = 166/329 (50%), Gaps = 32/329 (9%)

Query: 125 ALPMIIGASISATTRNLIGML---------LGRFVVGTGMG------LGPTVAA------ 163
           A P+ IG +I    R  +G+L         L  F+VG+ +        G  +        
Sbjct: 161 AFPVYIGETIQPEVRGALGLLPTAFGNTGILLAFLVGSYLDWSNLAFFGAAIPVPFFLLM 220

Query: 164 LYVTESPHWLYKKGRTAEAEAEFEKLLGGS-HVKSSLAELSKLDRGDD---GDIVKFEEL 219
           +   E+P W   K R  EA      L G + +++  + +L+      D   G+   F++L
Sbjct: 221 ILTPETPRWYVSKARVQEARKSLRWLRGKNVNIEKEMRDLTISQTESDRTGGN--AFKQL 278

Query: 220 LYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAG--LSSGLANVFVGIANLLGSV 277
              R+   V I   L   QQL+GINA+ ++++S+F+ +G  +   LA++ +G+ N + + 
Sbjct: 279 FSKRYLPAVMISLGLMLFQQLTGINAVIFYAASIFQMSGSSVDENLASIIIGVVNFISTF 338

Query: 278 VAMVLMDKLGRKALLQWSFFSMAVSMAIQVAA---SSSYIPGSASLYLSVGGMLMFVLTF 334
           +A +L+D+LGRK LL  S  +M  ++    A      ++I  +A  +L +  ++++VL F
Sbjct: 339 IATMLIDRLGRKVLLYISSVAMITTLLALGAYFYLKQNHIDVTAYGWLPLACLVIYVLGF 398

Query: 335 ALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFG 394
           ++G GP+P L+L EI PS+IR  A ++    +W   F V   F  +++ +       +F 
Sbjct: 399 SIGFGPIPWLMLGEILPSKIRGTAASLATGFNWTCTFIVTKTFQNIIDAIYMHGTLWLFA 458

Query: 395 TFCLMAVAFVKRNVVETKGKSLQEIEIAL 423
             C+  + FV   V ETKGKSL+EIE+ L
Sbjct: 459 VICIGGLLFVIFFVPETKGKSLEEIEMKL 487

High-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Bombyx mori (taxid: 7091)

>sp|Q291H8|TRET1_DROPS Facilitated trehalose transporter Tret1 OS=Drosophila pseudoobscura pseudoobscura GN=Tret1 PE=3 SV=3

 Score =  137 bits (344), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 105/366 (28%), Positives = 178/366 (48%), Gaps = 40/366 (10%)

Query: 88  LAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGML-- 145
           +A  + V+M L G F+     G  +            +LP+ +G ++    R  +G+L  
Sbjct: 495 IACAVNVAMVLAGRFLAGFCVGIAS-----------LSLPVYLGETVQPEVRGTLGLLPT 543

Query: 146 -------LGRFVVGTGMG------LGPTVAALY------VTESPHWLYKKGRTAEAEAEF 186
                  L  FV GT M       LG  +   +      + E+P W   +GR  +A    
Sbjct: 544 AFGNIGILLCFVAGTYMDWSMLAFLGAALPVPFLILMFLIPETPRWFVSRGREEKARKAL 603

Query: 187 EKLLGG-SHVKSSLAEL--SKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGI 243
             L G  + V+  L  L  S+ D        K  ELL   + + + I   L   QQLSGI
Sbjct: 604 SWLRGKEADVEPELKGLMRSQADADRQATQNKMMELLKRNNLKPLSISLGLMFFQQLSGI 663

Query: 244 NAIFYFSSSVFKSAG--LSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAV 301
           NA+ +++ S+FK AG  +   L  + VGI N + + +A +L+D+ GRK LL  S  +M +
Sbjct: 664 NAVIFYTVSIFKDAGSTIDGNLCTIIVGIVNFMATFIATLLIDRAGRKILLYVSNIAMII 723

Query: 302 SMAI--QVAASSSYIPGSASL-YLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKA 358
           ++ +        S+    + L +L +   ++++L F+LG GP+P L++ EI PS+IR  A
Sbjct: 724 TLFVLGGFFYCKSHGQDVSQLGWLPLSCFVIYILGFSLGFGPIPWLMMGEILPSKIRGSA 783

Query: 359 MAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQE 418
            +V  + +W   F V   F  +++ +G    + +FG+ C + + FV   V ET+GK+L++
Sbjct: 784 ASVATAFNWSCTFVVTKTFQDMIDFMGAHGAFWLFGSICFIGLFFVILYVPETQGKTLED 843

Query: 419 IEIALL 424
           IE  ++
Sbjct: 844 IERKMM 849

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|B4GAP7|TRET1_DROPE Facilitated trehalose transporter Tret1 OS=Drosophila persimilis GN=Tret1 PE=3 SV=2

 Score =  137 bits (344), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 105/366 (28%), Positives = 178/366 (48%), Gaps = 40/366 (10%)

Query: 88  LAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGML-- 145
           +A  + V+M L G F+     G  +            +LP+ +G ++    R  +G+L  
Sbjct: 496 IACAVNVAMVLAGRFLAGFCVGIAS-----------LSLPVYLGETVQPEVRGTLGLLPT 544

Query: 146 -------LGRFVVGTGMG------LGPTVAALY------VTESPHWLYKKGRTAEAEAEF 186
                  L  FV GT M       LG  +   +      + E+P W   +GR  +A    
Sbjct: 545 AFGNIGILLCFVAGTYMDWSMLAFLGAALPVPFLILMFLIPETPRWFVSRGREEKARKAL 604

Query: 187 EKLLGG-SHVKSSLAEL--SKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGI 243
             L G  + V+  L  L  S+ D        K  ELL   + + + I   L   QQLSGI
Sbjct: 605 SWLRGKEADVEPELKGLMRSQADADRQATQNKMMELLKRNNLKPLSISLGLMFFQQLSGI 664

Query: 244 NAIFYFSSSVFKSAG--LSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAV 301
           NA+ +++ S+FK AG  +   L  + VGI N + + +A +L+D+ GRK LL  S  +M +
Sbjct: 665 NAVIFYTVSIFKDAGSTIDGNLCTIIVGIVNFMATFIATLLIDRAGRKILLYVSNIAMII 724

Query: 302 SMAI--QVAASSSYIPGSASL-YLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKA 358
           ++ +        S+    + L +L +   ++++L F+LG GP+P L++ EI PS+IR  A
Sbjct: 725 TLFVLGGFFYCKSHGQDVSQLGWLPLSCFVIYILGFSLGFGPIPWLMMGEILPSKIRGSA 784

Query: 359 MAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQE 418
            +V  + +W   F V   F  +++ +G    + +FG+ C + + FV   V ET+GK+L++
Sbjct: 785 ASVATAFNWSCTFVVTKTFQDMIDFMGAHGAFWLFGSICFIGLFFVILYVPETQGKTLED 844

Query: 419 IEIALL 424
           IE  ++
Sbjct: 845 IERKMM 850

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila persimilis (taxid: 7234)

>sp|B4HNS1|TRE12_DROSE Facilitated trehalose transporter Tret1-2 homolog OS=Drosophila sechellia GN=Tret1-2 PE=3 SV=1

 Score =  137 bits (344), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 104/386 (26%), Positives = 174/386 (45%), Gaps = 65/386 (16%)

Query: 100 GAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVG------- 152
            A  G    G + + +GRR      A+P I+ + + A   N+I +L GRF+ G       
Sbjct: 81  AALAGGITGGPLIEYLGRRNTILATAVPFIVSSLLIACAVNVIMILCGRFLTGFCVGIAS 140

Query: 153 ----------------TGMGLGPT----------------------------------VA 162
                             +GL PT                                  + 
Sbjct: 141 LSLPVYLGETLQPEVRGTLGLLPTALGNIGILVCYVAGSFMNWSILAFLGAALPVPFLIL 200

Query: 163 ALYVTESPHWLYKKGRTAEAEAEFEKLLGG-SHVKSSLAELSKLDRGDDGDIVKFE--EL 219
            + + E+P W   +G+   A    + L G  + V+  L +L +     D    +    EL
Sbjct: 201 MIIIPETPRWFVNRGQEERARKALKWLRGKEADVEPELKDLMQSQAEADSQATRNTCLEL 260

Query: 220 LYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAG--LSSGLANVFVGIANLLGSV 277
               + + + I   L   QQ SGINA+ +++  +FK AG  + S L  + VGI N   + 
Sbjct: 261 FKRINLKPLSISLGLMFFQQFSGINAVIFYTVQIFKDAGSTIDSNLCTIIVGIVNFFATF 320

Query: 278 VAMVLMDKLGRKALLQWSFFSMAVSMAI--QVAASSSYIPGSASL-YLSVGGMLMFVLTF 334
           + ++L+D+LGRK LL  S  +M ++++I        ++ P  + L +L +   ++++L F
Sbjct: 321 MGIILIDRLGRKILLYVSDIAMILTLSILGGFFYCKAHGPDVSHLGWLPLSCFVIYILGF 380

Query: 335 ALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFG 394
           +LG GP+P L++ EI P++IR  A +V  + +W   F V   F  L   +GP   + +FG
Sbjct: 381 SLGFGPIPWLMMGEILPAKIRGPAASVVTAFNWFCTFVVTKTFQDLTVAMGPHGAFWLFG 440

Query: 395 TFCLMAVAFVKRNVVETKGKSLQEIE 420
             C++ + FV   V ET+GKSL+EIE
Sbjct: 441 VVCIVGLFFVIIYVPETRGKSLEEIE 466

Fails to transport trehalose.

Drosophila sechellia (taxid: 7238)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	427
27261731	489	sugar transporter [Citrus unshiu]	1.0	0.873	0.746	0.0
224054374	489	predicted protein [Populus trichocarpa]	1.0	0.873	0.619	1e-162
15220399	493	putative plastidic glucose transporter 2	0.990	0.858	0.630	1e-160
255546433	508	sugar transporter, putative [Ricinus com	0.997	0.838	0.641	1e-159
225445194	488	PREDICTED: probable plastidic glucose tr	0.995	0.870	0.653	1e-159
42570243	494	putative plastidic glucose transporter 2	0.990	0.856	0.627	1e-157
297841413	484	hypothetical protein ARALYDRAFT_475826 [	0.967	0.853	0.637	1e-157
449449521	490	PREDICTED: probable plastidic glucose tr	0.992	0.865	0.623	1e-150
224142161	489	predicted protein [Populus trichocarpa]	0.978	0.854	0.606	1e-144
449465276	459	PREDICTED: probable plastidic glucose tr	0.899	0.836	0.623	1e-140

>gi|27261731|gb|AAN86062.1| sugar transporter [Citrus unshiu]

 Score =  649 bits (1674), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/489 (74%), Positives = 387/489 (79%), Gaps = 62/489 (12%)

Query: 1   MWGRQREASMMYKRTSSRDRSSTFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSS 60
           MWGRQREASMMYKRTSSRDRSSTFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSS
Sbjct: 1   MWGRQREASMMYKRTSSRDRSSTFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSS 60

Query: 61  FLFGYHLGVVNEPLESISLDLGFN-------------------GNTL----AEGL----V 93
           FLFGYHLGVVNEPLESISLDLGFN                   G+TL    A+G+     
Sbjct: 61  FLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRA 120

Query: 94  VSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISA----------------- 136
             +C     IG+++S    + +G      +    M +G +++A                 
Sbjct: 121 FQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGA 180

Query: 137 -----TTRNLIGMLL---------GRFVVGTGMGLGP----TVAALYVTESPHWLYKKGR 178
                T   L+G LL         G + +   + + P     +A ++  ESPHWLYKKGR
Sbjct: 181 FIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGR 240

Query: 179 TAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQ 238
           TAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQ
Sbjct: 241 TAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQ 300

Query: 239 QLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFS 298
           QLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFS
Sbjct: 301 QLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFS 360

Query: 299 MAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKA 358
           MAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKA
Sbjct: 361 MAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKA 420

Query: 359 MAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQE 418
           MAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQE
Sbjct: 421 MAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQE 480

Query: 419 IEIALLPQE 427
           IEIALLPQE
Sbjct: 481 IEIALLPQE 489

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054374|ref|XP_002298228.1| predicted protein [Populus trichocarpa] gi|222845486|gb|EEE83033.1| predicted protein [Populus trichocarpa]

 Score =  578 bits (1490), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 303/489 (61%), Positives = 359/489 (73%), Gaps = 62/489 (12%)

Query: 1   MWGRQREASMMYKRTSSRDRSSTFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSS 60
           M GR  E  +  KR SSRD  + +D EE++  +  GT  +  NP W+ S  HVLVATLSS
Sbjct: 1   MRGRYVETVVTKKRASSRDFINAYDREESSGHLAIGTAKDAGNPHWRHSLVHVLVATLSS 60

Query: 61  FLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRA 120
           FLFGYHLGVVNE LE+IS DLGF+GNT+AEGLVVS CLGGAF+GS  SGWIADGVGRRRA
Sbjct: 61  FLFGYHLGVVNETLETISFDLGFSGNTMAEGLVVSTCLGGAFVGSIFSGWIADGVGRRRA 120

Query: 121 FQLCALPMIIGASISATTRNLIGM------------------------------------ 144
           FQLCALPMIIGAS+SATT++L GM                                    
Sbjct: 121 FQLCALPMIIGASMSATTKDLWGMLLGRFFVGTGMGIGPPVAALYVTEVSPAYVRGTYGS 180

Query: 145 ---------LLGRFVVGT----GMG-------LGPTVAAL------YVTESPHWLYKKGR 178
                    LLG FV+G      MG       +    AA+      +  ESPHWL K+GR
Sbjct: 181 LTQISTCLGLLGSFVIGIPAKETMGWWRICFWVSAIPAAMLALFMEFCAESPHWLLKRGR 240

Query: 179 TAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQ 238
           + EAEA+FEKLLGGSHVKS++ ELSK DRGD+ D VK  E LYGR+F+VVFIGS LFALQ
Sbjct: 241 STEAEAQFEKLLGGSHVKSAIIELSKSDRGDEVDKVKLSEFLYGRYFKVVFIGSALFALQ 300

Query: 239 QLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFS 298
           QLSGINA+FYFSS+VFKSAG+ S  AN+ VG++NLLGS++AMV+MDKLGRK LL  SFF 
Sbjct: 301 QLSGINAVFYFSSAVFKSAGVPSDSANICVGVSNLLGSIIAMVMMDKLGRKVLLTGSFFG 360

Query: 299 MAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKA 358
           MAVSM +Q  A++S++   A+LYLSVGGML+FVL F+LGAGPVPSLLL EIFPSRIRAKA
Sbjct: 361 MAVSMGLQATAATSFVSSFAALYLSVGGMLLFVLMFSLGAGPVPSLLLSEIFPSRIRAKA 420

Query: 359 MAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQE 418
           +A+CM+VHWVINFFVGLLFLRLLEQ+GP +LY++FG+FCL+AV FVK+NV+ETKGKSLQE
Sbjct: 421 LAICMAVHWVINFFVGLLFLRLLEQIGPLVLYTVFGSFCLVAVFFVKKNVLETKGKSLQE 480

Query: 419 IEIALLPQE 427
           IEIAL+P E
Sbjct: 481 IEIALMPPE 489

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15220399|ref|NP_176898.1| putative plastidic glucose transporter 2 [Arabidopsis thaliana] gi|75334518|sp|Q9FYG3.1|PLST2_ARATH RecName: Full=Probable plastidic glucose transporter 2 gi|9828628|gb|AAG00251.1|AC002130_16 F1N21.12 [Arabidopsis thaliana] gi|110742090|dbj|BAE98976.1| transport protein like protein [Arabidopsis thaliana] gi|332196504|gb|AEE34625.1| putative plastidic glucose transporter 2 [Arabidopsis thaliana]

 Score =  570 bits (1470), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 312/495 (63%), Positives = 367/495 (74%), Gaps = 72/495 (14%)

Query: 1   MWGRQREASMMYKRTSSRDRSSTFDVEETTALVQNG--TEVENTNPSWKLSFPHVLVATL 58
           M G QRE S MYKRTSSRD S   DVE+++ L++N    E+E TNPSWK S PHVLVAT+
Sbjct: 1   MLGLQRETSSMYKRTSSRDYSPMIDVEDSSGLLENDVDNEMETTNPSWKCSLPHVLVATI 60

Query: 59  SSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRR 118
           SSFLFGYHLGVVNEPLESIS DLGF+G+TLAEGLVVS+CLGGAF+GS  SG +ADG GRR
Sbjct: 61  SSFLFGYHLGVVNEPLESISSDLGFSGDTLAEGLVVSVCLGGAFLGSLFSGGVADGFGRR 120

Query: 119 RAFQLCALPMIIGASISATTRNLIGMLL-------------------------------- 146
           RAFQ+CALPMI+GA +S  + +L  MLL                                
Sbjct: 121 RAFQICALPMILGAFVSGVSNSLAVMLLGRFLVGTGMGLGPPVAALYVTEVSPAFVRGTY 180

Query: 147 GRFV-VGTGMGLGPTVAALYV--------------------------------TESPHWL 173
           G F+ + T +GL   +AAL++                                 ESP WL
Sbjct: 181 GSFIQIATCLGL---MAALFIGIPVHNITGWWRVCFWLSTIPAALLALGMFLCAESPQWL 237

Query: 174 YKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLD--RGDDGDIVKFEELLYGRHFRVVFIG 231
           +K+G+ AEAEAEFE+LLGGSHVK+++AEL KLD  + D+ D+V   ELLYGRH RVVFIG
Sbjct: 238 FKQGKIAEAEAEFERLLGGSHVKTAMAELYKLDLDKTDEPDVVSLSELLYGRHSRVVFIG 297

Query: 232 STLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKAL 291
           STLFALQQLSGINA+FYFSS+VFKSAG+ S L N+FVG++NLLGSV+AMVLMDK+GRK L
Sbjct: 298 STLFALQQLSGINAVFYFSSTVFKSAGVPSDLGNIFVGVSNLLGSVIAMVLMDKVGRKLL 357

Query: 292 LQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFP 351
           L WSF  MA +MA+QV A+SSY+P  ++L LSVGG L+FVLTFALGAGPVP LLLPEIFP
Sbjct: 358 LLWSFIGMAAAMALQVGATSSYLPHFSALCLSVGGTLVFVLTFALGAGPVPGLLLPEIFP 417

Query: 352 SRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVET 411
           SRIRAKAMA CMSVHWVINFFVGLLFLRLLE+LGP+LLYS+F TFCLMAV FVKRNV+ET
Sbjct: 418 SRIRAKAMAFCMSVHWVINFFVGLLFLRLLEKLGPRLLYSMFSTFCLMAVMFVKRNVIET 477

Query: 412 KGKSLQEIEIALLPQ 426
           KGK+LQEIEI+LL +
Sbjct: 478 KGKTLQEIEISLLAK 492

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255546433|ref|XP_002514276.1| sugar transporter, putative [Ricinus communis] gi|223546732|gb|EEF48230.1| sugar transporter, putative [Ricinus communis]

 Score =  568 bits (1465), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 318/496 (64%), Positives = 358/496 (72%), Gaps = 70/496 (14%)

Query: 1   MWGRQREASMMYKRTSSRDRSSTFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSS 60
           MWGRQRE+  MYKR  SRD +   D+E+ +AL+QN  + E TNPSW LSFPHV+ AT+SS
Sbjct: 14  MWGRQRESKSMYKRMPSRDYTKNSDIEDDSALIQNNMDAEVTNPSWSLSFPHVVAATISS 73

Query: 61  FLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRA 120
           FLFGYHLGVVNEPLESIS+DLGFNGNTLAEGLVVS CLGGAFIGS  SGWIADGVGRRRA
Sbjct: 74  FLFGYHLGVVNEPLESISIDLGFNGNTLAEGLVVSTCLGGAFIGSLFSGWIADGVGRRRA 133

Query: 121 FQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTE-SPHWLYKKGRT 179
           FQLCALPMIIGAS+SATT  L GML+GRF+VGTGMGLGP VAALYVTE SP ++     +
Sbjct: 134 FQLCALPMIIGASVSATTTTLAGMLVGRFLVGTGMGLGPPVAALYVTEVSPAFVRGTYGS 193

Query: 180 AEAEAEFEKLLGGSHVKSSLAELS--------------------------------KLDR 207
               A    L+G   +   + E++                                K  R
Sbjct: 194 FIQIATCLGLMGALFIGIPVREINGWWRICFWVSAIPAGLLALAMVFCVESPHWLYKQGR 253

Query: 208 GDDGDIVKFEELLYGRH------------------------------FRVVFIGSTLFAL 237
             + +I +FE LL G H                              FRVVFIGSTLFAL
Sbjct: 254 SAEAEI-EFERLLGGAHVRYAIQELSKVDRGDNIDNITLSELLYGRHFRVVFIGSTLFAL 312

Query: 238 QQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFF 297
           QQLSGINA+FYFSS+VFKSAG+ S LANVFVGIANL GS+ AMVLMD+LGRK LL WSFF
Sbjct: 313 QQLSGINAVFYFSSTVFKSAGVPSDLANVFVGIANLTGSLAAMVLMDRLGRKVLLLWSFF 372

Query: 298 SMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAK 357
            MAVSM +QVA +SSY+ GS +L+LSVGGML FV TFALGAGPVP LLLPEIFPSRIRAK
Sbjct: 373 GMAVSMGLQVAGASSYMAGSGALFLSVGGMLTFVFTFALGAGPVPGLLLPEIFPSRIRAK 432

Query: 358 AMAVCMSVHW------VINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVET 411
           AMA+CMSVHW      VINFFVGLLFLRLLEQLGPQLLY+IF + C++AV FVKRNV+ET
Sbjct: 433 AMAICMSVHWPISPSQVINFFVGLLFLRLLEQLGPQLLYAIFASSCMLAVVFVKRNVMET 492

Query: 412 KGKSLQEIEIALLPQE 427
           KGKSLQEIEIALLPQE
Sbjct: 493 KGKSLQEIEIALLPQE 508

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445194|ref|XP_002284229.1| PREDICTED: probable plastidic glucose transporter 2 [Vitis vinifera] gi|297738801|emb|CBI28046.3| unnamed protein product [Vitis vinifera] gi|310877904|gb|ADP37183.1| putative monosaccharide transporter [Vitis vinifera]

 Score =  567 bits (1461), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 320/490 (65%), Positives = 367/490 (74%), Gaps = 65/490 (13%)

Query: 1   MWGRQREASMMYKRTSSRDRSSTFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSS 60
           MWGRQ EAS+ YKR SSRD +   D+EE++AL QNG   E TNPSWKLS PH++VAT+SS
Sbjct: 1   MWGRQGEASVTYKRVSSRDNTKV-DMEESSALFQNGMGQEITNPSWKLSLPHIIVATISS 59

Query: 61  FLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRA 120
           FLFGYHLGVVNEPLE+I+LDLGF+GNTLAEGLVVS CLGGAFIGS  SGWIADG+GRRRA
Sbjct: 60  FLFGYHLGVVNEPLETIALDLGFSGNTLAEGLVVSTCLGGAFIGSLFSGWIADGIGRRRA 119

Query: 121 FQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTE-SPHWLYKKGRT 179
           FQLCALPMIIGAS+SATT++L GML+GRF+VGTGMG+GP VA+LYVTE SP ++     +
Sbjct: 120 FQLCALPMIIGASVSATTKSLEGMLIGRFLVGTGMGVGPPVASLYVTEVSPAFVRGTYGS 179

Query: 180 AEAEAEFEKLLG----GSHVKSSL------------------------AE----LSKLDR 207
               A    L+G    G  VK+ +                        AE    L K  R
Sbjct: 180 FIQLATCLGLMGALFIGIPVKAIIGWWRICFWIATVPAGILAFAMMFCAESPHWLYKKGR 239

Query: 208 GDDGDIVKFEELLYGRHFR------------------------------VVFIGSTLFAL 237
             + +  +FE+LL G H +                              VVFIGSTLFAL
Sbjct: 240 IAEAE-AEFEKLLGGSHVKFAMADLHKSDRGDETDAVKLSELLYGRHFRVVFIGSTLFAL 298

Query: 238 QQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFF 297
           QQLSGINA+FYFSS+VFKSAG+ S LANVFVGIANL GS+ AM+LMDKLGRKALL WSFF
Sbjct: 299 QQLSGINAVFYFSSTVFKSAGVPSDLANVFVGIANLSGSITAMILMDKLGRKALLVWSFF 358

Query: 298 SMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAK 357
            MAV+M++QVA +SS+I GS +++LSV GML+FVLTFALGAGPVP LLLPEIFP+RIRAK
Sbjct: 359 GMAVAMSVQVAGASSFISGSGAVFLSVSGMLLFVLTFALGAGPVPGLLLPEIFPNRIRAK 418

Query: 358 AMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQ 417
           AMAVCMSVHWVINFFVGLLFL LLEQLGPQLLYS+F TFCLMAV FVKRNVVETKG+SLQ
Sbjct: 419 AMAVCMSVHWVINFFVGLLFLPLLEQLGPQLLYSMFCTFCLMAVVFVKRNVVETKGRSLQ 478

Query: 418 EIEIALLPQE 427
           EIEIALLPQE
Sbjct: 479 EIEIALLPQE 488

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42570243|ref|NP_849855.2| putative plastidic glucose transporter 2 [Arabidopsis thaliana] gi|332196503|gb|AEE34624.1| putative plastidic glucose transporter 2 [Arabidopsis thaliana]

 Score =  561 bits (1446), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 311/496 (62%), Positives = 366/496 (73%), Gaps = 73/496 (14%)

Query: 1   MWGRQREASMMYKRTSSRDRSSTFDVEETTALVQNG--TEVENTNPSWKLSFPHVLVATL 58
           M G QRE S MYKRTSSRD S   DVE+++ L++N    E+E TNPSWK S PHVLVAT+
Sbjct: 1   MLGLQRETSSMYKRTSSRDYSPMIDVEDSSGLLENDVDNEMETTNPSWKCSLPHVLVATI 60

Query: 59  SSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRR 118
           SSFLFGYHLGVVNEPLESIS DLGF+G+TLAEGLVVS+CLGGAF+GS  SG +ADG GRR
Sbjct: 61  SSFLFGYHLGVVNEPLESISSDLGFSGDTLAEGLVVSVCLGGAFLGSLFSGGVADGFGRR 120

Query: 119 RAFQLCALPMIIGASISATTRN----LIGMLL---------------------------- 146
           RAFQ+CALPMI+GA +S  + +    L+G  L                            
Sbjct: 121 RAFQICALPMILGAFVSGVSNSLAVMLLGRFLVGTGMGLGPPVAALYVTEVSPAFVRGTY 180

Query: 147 GRFV-VGTGMGLGPTVAALYV--------------------------------TESPHWL 173
           G F+ + T +GL   +AAL++                                 ESP WL
Sbjct: 181 GSFIQIATCLGL---MAALFIGIPVHNITGWWRVCFWLSTIPAALLALGMFLCAESPQWL 237

Query: 174 YKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLD--RGDDGDIVKFEELLYGRHFRVVFIG 231
           +K+G+ AEAEAEFE+LLGGSHVK+++AEL KLD  + D+ D+V   ELLYGRH RVVFIG
Sbjct: 238 FKQGKIAEAEAEFERLLGGSHVKTAMAELYKLDLDKTDEPDVVSLSELLYGRHSRVVFIG 297

Query: 232 STLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKAL 291
           STLFALQQLSGINA+FYFSS+VFKSAG+ S L N+FVG++NLLGSV+AMVLMDK+GRK L
Sbjct: 298 STLFALQQLSGINAVFYFSSTVFKSAGVPSDLGNIFVGVSNLLGSVIAMVLMDKVGRKLL 357

Query: 292 LQWSFFSMAVS-MAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIF 350
           L WSF  M  S MA+QV A+SSY+P  ++L LSVGG L+FVLTFALGAGPVP LLLPEIF
Sbjct: 358 LLWSFIGMVCSAMALQVGATSSYLPHFSALCLSVGGTLVFVLTFALGAGPVPGLLLPEIF 417

Query: 351 PSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVE 410
           PSRIRAKAMA CMSVHWVINFFVGLLFLRLLE+LGP+LLYS+F TFCLMAV FVKRNV+E
Sbjct: 418 PSRIRAKAMAFCMSVHWVINFFVGLLFLRLLEKLGPRLLYSMFSTFCLMAVMFVKRNVIE 477

Query: 411 TKGKSLQEIEIALLPQ 426
           TKGK+LQEIEI+LL +
Sbjct: 478 TKGKTLQEIEISLLAK 493

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297841413|ref|XP_002888588.1| hypothetical protein ARALYDRAFT_475826 [Arabidopsis lyrata subsp. lyrata] gi|297334429|gb|EFH64847.1| hypothetical protein ARALYDRAFT_475826 [Arabidopsis lyrata subsp. lyrata]

 Score =  560 bits (1442), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 310/486 (63%), Positives = 360/486 (74%), Gaps = 73/486 (15%)

Query: 11  MYKRTSSRDRSSTFDVEETTALV---QNGTEVENTNPSWKLSFPHVLVATLSSFLFGYHL 67
           MYKRTSSRD S   DVE+++ L+   +   E+E TNPSWK S PHVLVAT+SSFLFGYHL
Sbjct: 1   MYKRTSSRDYSPMVDVEDSSGLLLENEVNKEMETTNPSWKCSLPHVLVATISSFLFGYHL 60

Query: 68  GVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALP 127
           GVVNEPLESIS DLGF+G+TLAEGLVVS+CLGGAFIGS  SG +ADG GRRRAFQLCALP
Sbjct: 61  GVVNEPLESISSDLGFSGDTLAEGLVVSVCLGGAFIGSLFSGGVADGFGRRRAFQLCALP 120

Query: 128 MIIGASISATTRNLIGMLL--------------------------------GRFV-VGTG 154
           MI+GA IS  + +L  MLL                                G F+ + T 
Sbjct: 121 MILGAFISGVSNSLAVMLLGRFLVGTGMGLGPPVAALYVTEVSPAFVRGTFGSFIQIATC 180

Query: 155 MGLGPTVAALYV--------------------------------TESPHWLYKKGRTAEA 182
           +GL   +AAL++                                 ESP WL+K+G+ AEA
Sbjct: 181 LGL---MAALFIGIPVHNITGWWRVCFWLSTIPAALLALGMFLCAESPQWLFKQGKIAEA 237

Query: 183 EAEFEKLLGGSHVKSSLAELSKLD--RGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQL 240
           EAEFE+LLGGSHVK+++AEL KLD  + D+ D+V   ELLYGRH RVVFIGSTLFALQQL
Sbjct: 238 EAEFERLLGGSHVKTAMAELYKLDLDKTDEPDVVSLSELLYGRHSRVVFIGSTLFALQQL 297

Query: 241 SGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMA 300
           SGINA+FYFSS+VFKSAG+ S L N+FVG++NLLGSV+AMVLMDK+GRK LL WSF  MA
Sbjct: 298 SGINAVFYFSSTVFKSAGVPSDLGNIFVGVSNLLGSVIAMVLMDKVGRKLLLLWSFIGMA 357

Query: 301 VSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMA 360
           V+MA+QV A+SSY+P  ++L LSVGG L FVLTFALGAGPVP LLLPEIFPSRIRAKAMA
Sbjct: 358 VAMALQVGATSSYLPHFSALCLSVGGTLAFVLTFALGAGPVPGLLLPEIFPSRIRAKAMA 417

Query: 361 VCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQEIE 420
            CMSVHWVINFFVGLLFLRLLEQLGP+LLYS+F TFCLMAV FVKRNV+ETKGK+LQEIE
Sbjct: 418 FCMSVHWVINFFVGLLFLRLLEQLGPRLLYSMFSTFCLMAVMFVKRNVIETKGKTLQEIE 477

Query: 421 IALLPQ 426
           I+LL +
Sbjct: 478 ISLLAK 483

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449521|ref|XP_004142513.1| PREDICTED: probable plastidic glucose transporter 2-like [Cucumis sativus] gi|449522117|ref|XP_004168074.1| PREDICTED: probable plastidic glucose transporter 2-like [Cucumis sativus]

 Score =  537 bits (1384), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 307/492 (62%), Positives = 348/492 (70%), Gaps = 68/492 (13%)

Query: 1   MWGRQREASMMYKRTSSRDRSSTFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSS 60
           MW R+REA   YKR S +D S + D+E+ +A +QNG + E +NPSW LS PHVLVATL+S
Sbjct: 1   MWDRKREAFSTYKRLSLKDNSDSIDMEDNSAHLQNGKDFEASNPSWSLSLPHVLVATLTS 60

Query: 61  FLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRA 120
           FLFGYHLGVVNEPLE IS DLGFNGNT+AEGLVVS CLGGA IGS LSGWIADGVGRRRA
Sbjct: 61  FLFGYHLGVVNEPLEIISADLGFNGNTMAEGLVVSTCLGGALIGSLLSGWIADGVGRRRA 120

Query: 121 FQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTE-SPHWLYKKG-- 177
           FQL ALPMI+GA +SA T+ L GMLLGR  VGTGMGLGP VA+LYVTE SP   + +G  
Sbjct: 121 FQLSALPMILGAGMSAMTKTLAGMLLGRLFVGTGMGLGPPVASLYVTEISPA--FVRGTY 178

Query: 178 ----RTAEAEAEFEKLLGGSHVKS----------------------------SLAELSKL 205
               + A        LL G  VK                             S   L K 
Sbjct: 179 GSFIQIATCLGLMAALLIGIPVKDIADWWRTCFWVSTIPAALLALAMVFCAESPHWLYKQ 238

Query: 206 DRGDDGDIVKFEELLYGRH------------------------------FRVVFIGSTLF 235
            R ++ +  +FE+LL G H                              F+VVFIGSTLF
Sbjct: 239 GRTEEAE-TEFEKLLGGSHVKSALAELSKFDRGDEPDDVKLSELLFGRHFQVVFIGSTLF 297

Query: 236 ALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWS 295
           ALQQLSGINAIFYFSS+VFKS G+ S LANV VG++NL GS+VAM+LMD+LGRK LL WS
Sbjct: 298 ALQQLSGINAIFYFSSTVFKSVGVPSNLANVCVGLSNLAGSIVAMLLMDRLGRKLLLLWS 357

Query: 296 FFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIR 355
           F  MAV+MA+QV A S +   S +LYLSVGG LMFVL FALGAGPVP LLLPEIFPSRIR
Sbjct: 358 FSGMAVAMAVQVVAGSYHYSDSGALYLSVGGTLMFVLMFALGAGPVPGLLLPEIFPSRIR 417

Query: 356 AKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKS 415
           AKAMA+CMSVHWVINFFVGLLFL+LLE++GPQLLYS F TFCL+AVAFVKRNVVETKGKS
Sbjct: 418 AKAMAICMSVHWVINFFVGLLFLQLLEKMGPQLLYSGFATFCLIAVAFVKRNVVETKGKS 477

Query: 416 LQEIEIALLPQE 427
           LQEIEIALLPQ+
Sbjct: 478 LQEIEIALLPQD 489

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142161|ref|XP_002324427.1| predicted protein [Populus trichocarpa] gi|222865861|gb|EEF02992.1| predicted protein [Populus trichocarpa]

 Score =  516 bits (1330), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 302/498 (60%), Positives = 342/498 (68%), Gaps = 80/498 (16%)

Query: 1   MWGRQREASMMYKRTSSRDRSSTFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSS 60
           M G +     MYKR SSRD +   DVE+ + + Q+  + E TNPSW+LSFPHVL AT+S+
Sbjct: 1   MRGHRTGEYSMYKRMSSRDFTVAADVEDNSVVSQSIPDQEITNPSWRLSFPHVLAATISA 60

Query: 61  FLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRA 120
           FLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVS CLGGA IGS  SGWIADG+GRRRA
Sbjct: 61  FLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSTCLGGALIGSLFSGWIADGIGRRRA 120

Query: 121 FQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTE-SPHW------- 172
           FQLCALPMI+GASISATT+ L GMLLGR +VGTGMGLGP V++LYVTE SP +       
Sbjct: 121 FQLCALPMIVGASISATTKTLAGMLLGRLLVGTGMGLGPPVSSLYVTEVSPSFVRGTYGS 180

Query: 173 -------------LYKKGRTAEAEAEFEKLLGGSHVKSSLAELS------------KLDR 207
                        L+      E    +      S V + +  LS            K  R
Sbjct: 181 FIQIATCLGLMAALFIGIPVREIAGWWRICFWVSTVPAGILALSMMFCAESPHWLYKQGR 240

Query: 208 GDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLS-------------------------- 241
             + +  +FE LL G H +        FA+Q+LS                          
Sbjct: 241 TAEAE-AEFERLLGGAHVK--------FAMQELSKLDRGDDSDDVHFSELLYGRCFRVVF 291

Query: 242 ------------GINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRK 289
                       GINAIFYFSS+VFK+AG+ S LANVFVGIANL GSV+AMVLMDK+GRK
Sbjct: 292 IGSTLFALQQLSGINAIFYFSSTVFKNAGVPSDLANVFVGIANLSGSVIAMVLMDKMGRK 351

Query: 290 ALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEI 349
            LL WSF  MAVSM +QV A+SS + GS +LYLSVGGMLMFV TFA+GAGPVP LLLPEI
Sbjct: 352 VLLLWSFSGMAVSMGLQVVAASSNMLGSGTLYLSVGGMLMFVFTFAIGAGPVPGLLLPEI 411

Query: 350 FPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVV 409
           FPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGP+LLY+IFGTFCLMAV FVKRNV+
Sbjct: 412 FPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPRLLYTIFGTFCLMAVVFVKRNVM 471

Query: 410 ETKGKSLQEIEIALLPQE 427
           ETKGKSLQEIEIALLP E
Sbjct: 472 ETKGKSLQEIEIALLPPE 489

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449465276|ref|XP_004150354.1| PREDICTED: probable plastidic glucose transporter 3-like [Cucumis sativus]

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 278/446 (62%), Positives = 314/446 (70%), Gaps = 62/446 (13%)

Query: 44  PSWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFI 103
           PSW+  FPHV+VATL+SFLFGYHLGVVNE LESISLDL F+G+TLAEGLVVS CLGGAF+
Sbjct: 14  PSWRRPFPHVVVATLASFLFGYHLGVVNETLESISLDLAFSGSTLAEGLVVSTCLGGAFL 73

Query: 104 GSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAA 163
           GS  SGWIADGVGRRRA QLCALPMIIGAS+SATT+NL GMLLGR  VGTGMGLGP VAA
Sbjct: 74  GSLFSGWIADGVGRRRALQLCALPMIIGASMSATTKNLWGMLLGRLFVGTGMGLGPAVAA 133

Query: 164 LYVTE-SPHW------------------------LYKKGRTAEAEAEF------------ 186
           LYV+E SP +                        L  KG      A F            
Sbjct: 134 LYVSEVSPAYVRGTFGSFTQISSCLGLLGSLFMGLQAKGIVGWWRACFWVSVIPAALLAL 193

Query: 187 ---------EKLLGGSHVKSSLAELSKL-------------DRGDDGD---IVKFEELLY 221
                      L        + AE  KL              + D G+    VK  ELL+
Sbjct: 194 LMEFSAESPHWLFKSGRTAEAEAEFEKLLGGADVKYAYAELSKSDKGEDSGAVKLSELLH 253

Query: 222 GRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMV 281
           GRH RVVFIGSTLFALQQLSGINA+FYFSSSVFKS G+ S  AN+ +G+AN LGS+VAM+
Sbjct: 254 GRHHRVVFIGSTLFALQQLSGINAVFYFSSSVFKSFGVPSDRANICIGVANFLGSIVAMI 313

Query: 282 LMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPV 341
           LMDKLGR+ LL  SF  M VSM +QV  +SS+   + + YLS GGML+FVLTF+LGAGPV
Sbjct: 314 LMDKLGRRVLLLGSFSGMVVSMGLQVFGASSFPSSTEAFYLSAGGMLLFVLTFSLGAGPV 373

Query: 342 PSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAV 401
           PSLLL EIFPSRIRAKAMA CMSVHWVINFFVGLLFL LLEQ+G Q+LY++FG FCL++V
Sbjct: 374 PSLLLSEIFPSRIRAKAMAFCMSVHWVINFFVGLLFLPLLEQIGAQILYTVFGAFCLISV 433

Query: 402 AFVKRNVVETKGKSLQEIEIALLPQE 427
            FVKRNVVETKGKSLQEIE+ALLP E
Sbjct: 434 IFVKRNVVETKGKSLQEIEMALLPVE 459

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	427
TAIR|locus:2019554	494	AT1G67300 [Arabidopsis thalian	0.601	0.520	0.719	1e-154
TAIR|locus:2017899	495	SGB1 "SUPPRESSOR OF G PROTEIN	0.601	0.519	0.665	1.7e-139
TAIR|locus:2205548	524	AT1G05030 [Arabidopsis thalian	0.606	0.494	0.409	8.3e-81
TAIR|locus:2181422	546	PGLCT "plastidic GLC transloca	0.775	0.606	0.373	2.1e-52
TAIR|locus:2025132	487	ERDL6 "ERD6-like 6" [Arabidops	0.669	0.587	0.299	3.3e-45
DICTYBASE|DDB_G0278261	630	DDB_G0278261 "solute carrier f	0.632	0.428	0.292	5.9e-45
TAIR|locus:2016407	488	AT1G19450 [Arabidopsis thalian	0.669	0.586	0.296	1.1e-44
UNIPROTKB|P0AGF4	491	xylE "xylose:H+ symporter" [Es	0.592	0.515	0.345	3.5e-44
TAIR|locus:2058193	509	INT1 "inositol transporter 1"	0.608	0.510	0.287	2.6e-38
TIGR_CMR|CPS_0245	478	CPS_0245 "sugar transporter fa	0.601	0.537	0.283	5.3e-38

TAIR|locus:2019554 AT1G67300 [Arabidopsis thaliana (taxid:3702)]

 Score = 934 (333.8 bits), Expect = 1.0e-154, Sum P(2) = 1.0e-154
 Identities = 187/260 (71%), Positives = 215/260 (82%)

Query:   168 ESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLD--RGDDGDIVKFEELLYGRHF 225
             ESP WL+K+G+ AEAEAEFE+LLGGSHVK+++AEL KLD  + D+ D+V   ELLYGRH 
Sbjct:   232 ESPQWLFKQGKIAEAEAEFERLLGGSHVKTAMAELYKLDLDKTDEPDVVSLSELLYGRHS 291

Query:   226 RVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDK 285
             RVVFIGSTLFALQQLSGINA+FYFSS+VFKSAG+ S L N+FVG++NLLGSV+AMVLMDK
Sbjct:   292 RVVFIGSTLFALQQLSGINAVFYFSSTVFKSAGVPSDLGNIFVGVSNLLGSVIAMVLMDK 351

Query:   286 LGRKALLQWSFFSMAVS-MAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSL 344
             +GRK LL WSF  M  S MA+QV A+SSY+P  ++L LSVGG L+FVLTFALGAGPVP L
Sbjct:   352 VGRKLLLLWSFIGMVCSAMALQVGATSSYLPHFSALCLSVGGTLVFVLTFALGAGPVPGL 411

Query:   345 LLPEIFPSRIRAKAMAVCMSVHWVINFFVGXXXXXXXXXXXXXXXYSIFGTFCLMAVAFV 404
             LLPEIFPSRIRAKAMA CMSVHWVINFFVG               YS+F TFCLMAV FV
Sbjct:   412 LLPEIFPSRIRAKAMAFCMSVHWVINFFVGLLFLRLLEKLGPRLLYSMFSTFCLMAVMFV 471

Query:   405 KRNVVETKGKSLQEIEIALL 424
             KRNV+ETKGK+LQEIEI+LL
Sbjct:   472 KRNVIETKGKTLQEIEISLL 491

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2017899 SGB1 "SUPPRESSOR OF G PROTEIN BETA1" [Arabidopsis thaliana (taxid:3702)]

 Score = 844 (302.2 bits), Expect = 1.7e-139, Sum P(2) = 1.7e-139
 Identities = 171/257 (66%), Positives = 201/257 (78%)

Query:   168 ESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRV 227
             ESP WL+K+GR AEAEA FEKLLGGS+VK+++AEL K DRGDD D  K  ELL+GR FRV
Sbjct:   235 ESPQWLFKRGRAAEAEAVFEKLLGGSYVKAAMAELVKSDRGDDADSAKLSELLFGRSFRV 294

Query:   228 VFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLG 287
             VFIGSTLFALQQLSGINA+FYFSS+VFK AG+ S  AN+ VG+ NLLGS VA+VLMDKLG
Sbjct:   295 VFIGSTLFALQQLSGINAVFYFSSTVFKKAGVPSASANICVGVCNLLGSTVAVVLMDKLG 354

Query:   288 RKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLP 347
             RK LL  SF  MAVS+ +Q  A +S      +L+LSVGGML+FVL+FA GAGPVPSLLL 
Sbjct:   355 RKVLLIGSFAGMAVSLGLQAIAYTSLPSPFGTLFLSVGGMLLFVLSFATGAGPVPSLLLS 414

Query:   348 EIFPSRIRAKAMAVCMSVHWVINFFVGXXXXXXXXXXXXXXXYSIFGTFCLMAVAFVKRN 407
             EI P R+RA A+AVC++VHWVINFFVG                +IFG FC++AV FV++N
Sbjct:   415 EICPGRLRATALAVCLAVHWVINFFVGLLFLRMLEQLGSVLLNAIFGFFCVVAVIFVQKN 474

Query:   408 VVETKGKSLQEIEIALL 424
             VVETKGKSLQEIEI+LL
Sbjct:   475 VVETKGKSLQEIEISLL 491

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0010051 "xylem and phloem pattern formation" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

GO:0048519 "negative regulation of biological process" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2205548 AT1G05030 [Arabidopsis thaliana (taxid:3702)]

 Score = 498 (180.4 bits), Expect = 8.3e-81, Sum P(2) = 8.3e-81
 Identities = 107/261 (40%), Positives = 154/261 (59%)

Query:   165 YVTESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDI-VKFEELLYGR 223
             +  ESP WL K GR  +A+     + GGS V+ ++ +   + +    ++  ++ ELL   
Sbjct:   257 FAVESPRWLCKVGRLDDAKVVIRNIWGGSEVEKAVEDFQSVMKNSGSNLNSRWLELLDKP 316

Query:   224 HFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGL-ANVFVGIANLLGSVVAMVL 282
             H RV FIG +LF LQQ +GIN + YFSS  F++ G++SG  A+++VG+ N  G++ A  L
Sbjct:   317 HSRVAFIGGSLFVLQQFAGINGVLYFSSLTFQNVGITSGAQASLYVGVTNFAGALCASYL 376

Query:   283 MDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVP 342
             +DK GRK LL  S+  MAVSM + V A    +    S  LS+ G LM++ +FA+GAGPV 
Sbjct:   377 IDKQGRKKLLIGSYLGMAVSMFLIVYAVGFPLDEDLSQSLSILGTLMYIFSFAIGAGPVT 436

Query:   343 SLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGXXXXXXXXXXXXXXXYSIFGTFCLMAVA 402
              L++PE+  +R R K M    SVHWV NF VG               Y+ FG+  L+A A
Sbjct:   437 GLIIPELSSNRTRGKIMGFSFSVHWVSNFLVGLFFLDLVEKYGVGTVYASFGSVSLLAAA 496

Query:   403 FVKRNVVETKGKSLQEIEIAL 423
             F     VETKG+SL+EIE++L
Sbjct:   497 FSHLFTVETKGRSLEEIELSL 517

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2181422 PGLCT "plastidic GLC translocator" [Arabidopsis thaliana (taxid:3702)]

 Score = 543 (196.2 bits), Expect = 2.1e-52, P = 2.1e-52
 Identities = 130/348 (37%), Positives = 198/348 (56%)

Query:    85 GNTLAE-GLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCA---LPMIIGASISATT-- 138
             G  LA  G+ +S  +   +I       I   +G      +C      +I G  ++A    
Sbjct:   203 GRLLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICIGILAALIAGLPLAANPLW 262

Query:   139 -RNLIGM-LLGRFVVGTGMGLGPTVAALYVTESPHWLYKKGRTAEAEAEFEKLLGGSHVK 196
              R + G+ ++   ++  GM   P        ESP WL ++G+ +EAE   + L G   V 
Sbjct:   263 WRTMFGVAVIPSVLLAIGMAFSP--------ESPRWLVQQGKVSEAEKAIKTLYGKERVV 314

Query:   197 SSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKS 256
               + +LS   +G       + +L   R+++VV +G+ LF  QQL+GINA+ Y+S+SVF+S
Sbjct:   315 ELVRDLSASGQGSSEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRS 374

Query:   257 AGLSSGLA-NVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIP 315
             AG+ S +A +  VG +N+ G+ VA  LMDK+GRK+LL  SF  MA+SM +   + +    
Sbjct:   375 AGIQSDVAASALVGASNVFGTAVASSLMDKMGRKSLLLTSFGGMALSMLLLSLSFTWKAL 434

Query:   316 GSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGX 375
              + S  L+V G +++VL+F+LGAGPVP+LLLPEIF SRIRAKA+A+ + +HW+ NF +G 
Sbjct:   435 AAYSGTLAVVGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGL 494

Query:   376 XXXXXXXXXXXXXXYSIFGTFCLMAVAFVKRNVVETKGKSLQEIEIAL 423
                           Y  F   C++AV ++  NVVETKG+SL+EIE+AL
Sbjct:   495 YFLSVVTKFGISSVYLGFAGVCVLAVLYIAGNVVETKGRSLEEIELAL 542

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

TAIR|locus:2025132 ERDL6 "ERD6-like 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 359 (131.4 bits), Expect = 3.3e-45, Sum P(2) = 3.3e-45
 Identities = 91/304 (29%), Positives = 157/304 (51%)

Query:   134 ISATTRNLIGMLLGRFV---VGTGMGLGPTVAAL----YVTESPHWLYKKGRTAEAEAEF 186
             +S T   ++  LLG FV   +   +G+ P    +    ++ ESP WL K G T E E   
Sbjct:   181 LSVTIGIMLAYLLGLFVPWRILAVLGILPCTLLIPGLFFIPESPRWLAKMGMTDEFETSL 240

Query:   187 EKLLG-GSHVKSSLAELSK-LDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGIN 244
             + L G  + +   + E+ + +      + V+F +L   R++  + +G  L  LQQL GIN
Sbjct:   241 QVLRGFETDITVEVNEIKRSVASSTKRNTVRFVDLKRRRYYFPLMVGIGLLVLQQLGGIN 300

Query:   245 AIFYFSSSVFKSAGLSSGLANVF-VGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSM 303
              + ++SS++F+SAG++S  A  F VG   ++ + ++  L+DK GR+ LL  S   M +S+
Sbjct:   301 GVLFYSSTIFESAGVTSSNAATFGVGAIQVVATAISTWLVDKAGRRLLLTISSVGMTISL 360

Query:   304 AIQVAAS--SSYIPGSASLY-----LSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRA 356
              I  AA     ++   + +Y     LSV G++  V+ F+LG GP+P L++ EI P  I+ 
Sbjct:   361 VIVAAAFYLKEFVSPDSDMYSWLSILSVVGVVAMVVFFSLGMGPIPWLIMSEILPVNIKG 420

Query:   357 KAMAVCMSVHWVINFFVGXXXXXXXXXXXXXXXYSIFGTFCLMAVAFVKRNVVETKGKSL 416
              A ++    +W  ++ +                ++++G  C   V FV   V ETKGK+L
Sbjct:   421 LAGSIATLANWFFSWLI-TMTANLLLAWSSGGTFTLYGLVCAFTVVFVTLWVPETKGKTL 479

Query:   417 QEIE 420
             +E++
Sbjct:   480 EELQ 483

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0010030 "positive regulation of seed germination" evidence=IMP

GO:0042593 "glucose homeostasis" evidence=IMP

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0009694 "jasmonic acid metabolic process" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

DICTYBASE|DDB_G0278261 DDB_G0278261 "solute carrier family 2 member protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 302 (111.4 bits), Expect = 5.9e-45, Sum P(2) = 5.9e-45
 Identities = 86/294 (29%), Positives = 140/294 (47%)

Query:   149 FVVGTGMGLGPTVAALYVTESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAEL------ 202
             F + +   L   +   +  ESP WL  K R  EA+   +K+    HV   L +L      
Sbjct:   339 FAIASIPSLFQFILGYWFVESPRWLVSKNREDEAKQIMKKI--EPHVSEDLIDLQITRIR 396

Query:   203 -SKLD-RGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLS 260
              S L+ +G+D  +  F+   Y ++ ++  IG  L  LQQ  GIN + Y+S  + + AG +
Sbjct:   397 SSVLEQKGNDNWLQLFQ---Y-QYLKIYIIGFGLNMLQQFVGINCVIYYSGIILEDAGFA 452

Query:   261 SGLA---NVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAI------QVAASS 311
                A      VGI  L+  ++++ L+D+ GRK LL      M + +A+        +  +
Sbjct:   453 KNAAVLIGALVGIPQLVMLLISVWLIDRFGRKPLLLVGCIGMIIGLAVLGYPFYDNSNPT 512

Query:   312 SYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINF 371
               I  +   +++V GM+ F L F++G GP+P+L+  EIFPS+IR KAMA+   ++W  N 
Sbjct:   513 GKIDNTKKGWIAVAGMIFFKLMFSMGLGPIPALIGSEIFPSKIRGKAMAISQLLNWAANC 572

Query:   372 FVGXXXXXXXXXXXXXX-XYSIFGTFCLMAVAFVKRNVVETKGKSLQEIEIALL 424
              V                 +  FG   ++   FV   V ETK   ++E+   LL
Sbjct:   573 IVNSMYLHMVNSKLGQAGTFWFFGGISIITFFFVLILVPETKNVQIEELSKRLL 626

GO:0055085 "transmembrane transport" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

TAIR|locus:2016407 AT1G19450 [Arabidopsis thaliana (taxid:3702)]

 Score = 353 (129.3 bits), Expect = 1.1e-44, Sum P(2) = 1.1e-44
 Identities = 90/304 (29%), Positives = 159/304 (52%)

Query:   134 ISATTRNLIGMLLGRFV---VGTGMGLGPTVAAL----YVTESPHWLYKKGRTAEAEAEF 186
             +S T   ++  LLG FV   +   +G+ P    +    ++ ESP WL K G T + E   
Sbjct:   182 LSVTIGIMLAYLLGLFVPWRILAVLGVLPCTLLIPGLFFIPESPRWLAKMGLTDDFETSL 241

Query:   187 EKLLG-GSHVKSSLAELSK-LDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGIN 244
             + L G  + +   + E+ + +        V+F +L   R++  + +G  L ALQQL GIN
Sbjct:   242 QVLRGFETDITVEVNEIKRSVASSSKRSAVRFVDLKRRRYYFPLMVGIGLLALQQLGGIN 301

Query:   245 AIFYFSSSVFKSAGL-SSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSM 303
              + ++SS++F+SAG+ SS +A   VG+  ++ + +A  L+DK GR+ LL  S   M +S+
Sbjct:   302 GVLFYSSTIFESAGVTSSNVATFGVGVVQVVATGIATWLVDKAGRRLLLMISSIGMTISL 361

Query:   304 AIQVAAS--SSYIPGSASLY-----LSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRA 356
              I   A     ++   +++Y     +SV G++  V++ +LG GP+P L++ EI P  I+ 
Sbjct:   362 VIVAVAFYLKEFVSPDSNMYNILSMVSVVGVVAMVISCSLGMGPIPWLIMSEILPVNIKG 421

Query:   357 KAMAVCMSVHWVINFFVGXXXXXXXXXXXXXXXYSIFGTFCLMAVAFVKRNVVETKGKSL 416
              A ++   ++W +++ V                ++++   C   V FV   V ETKGK+L
Sbjct:   422 LAGSIATLLNWFVSWLV-TMTANMLLAWSSGGTFTLYALVCGFTVVFVSLWVPETKGKTL 480

Query:   417 QEIE 420
             +EI+
Sbjct:   481 EEIQ 484

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

UNIPROTKB|P0AGF4 xylE "xylose:H+ symporter" [Escherichia coli K-12 (taxid:83333)]

 Score = 349 (127.9 bits), Expect = 3.5e-44, Sum P(3) = 3.5e-44
 Identities = 95/275 (34%), Positives = 143/275 (52%)

Query:   164 LY-VTESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELS-KLDRG-DDGDIVKFEELL 220
             LY V ESP WL  +G+  +AE    K++G +    ++ E+   LD G   G  +    L+
Sbjct:   217 LYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKTGGRL----LM 272

Query:   221 YGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLA---NVFVGIANLLGSV 277
             +G    V+ IG  L   QQ  GIN + Y++  VFK+ G S+ +A    + VG+ NL  +V
Sbjct:   273 FG--VGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTV 330

Query:   278 VAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALG 337
             +A++ +DK GRK L       MA+ M     A  +  PG  +L LS   ML +V  FA+ 
Sbjct:   331 LAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVAL-LS---MLFYVAAFAMS 386

Query:   338 AGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGXXX------XXXXXXXXXXXXYS 391
              GPV  +LL EIFP+ IR KA+A+ ++  W+ N+FV                      Y 
Sbjct:   387 WGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYW 446

Query:   392 IFGTFCLMAVAFVKRNVVETKGKSLQEIEIALLPQ 426
             I+G   ++A  F+ + V ETKGK+L+E+E    P+
Sbjct:   447 IYGCMGVLAALFMWKFVPETKGKTLEELEALWEPE 481

GO:0055085 "transmembrane transport" evidence=IEA

GO:0015753 "D-xylose transport" evidence=IGI;IDA

GO:0005887 "integral to plasma membrane" evidence=IDA;RCA

GO:0015519 "D-xylose:hydrogen symporter activity" evidence=IDA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0015293 "symporter activity" evidence=IEA

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

TAIR|locus:2058193 INT1 "inositol transporter 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 292 (107.8 bits), Expect = 2.6e-38, Sum P(2) = 2.6e-38
 Identities = 78/271 (28%), Positives = 129/271 (47%)

Query:   161 VAALYVTESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGD--IVKFEE 218
             +  L++ ESP WL+ K R AEA     +    S ++  +  LS  +  +      V + +
Sbjct:   206 ILMLFMPESPRWLFMKNRKAEAIQVLARTYDISRLEDEIDHLSAAEEEEKQRKRTVGYLD 265

Query:   219 LLYGRHFRVVFI-GSTLFALQQLSGINAIFYFSSSVFKSAGLSSG-LA---NVFVGIANL 273
             +   +  R+ F+ G+ L A QQ +GIN + Y+S ++ + AG  S  LA   ++ V   N 
Sbjct:   266 VFRSKELRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFHSNQLALFLSLIVAAMNA 325

Query:   274 LGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAA--SSSYIPGSASLY--LSVGGMLM 329
              G+VV +  +D  GRK L   S F + +S+ I   +    S       LY  L+V G+ +
Sbjct:   326 AGTVVGIYFIDHCGRKKLALSSLFGVIISLLILSVSFFKQSETSSDGGLYGWLAVLGLAL 385

Query:   330 FVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGXXXXXXXXXXXXXXX 389
             +++ FA G GPVP  +  EI+P + R     +  +V+W+ N  V                
Sbjct:   386 YIVFFAPGMGPVPWTVNSEIYPQQYRGICGGMSATVNWISNLIVAQTFLTIAEAAGTGMT 445

Query:   390 YSIFGTFCLMAVAFVKRNVVETKGKSLQEIE 420
             + I     ++AV FV   V ET+G +  E+E
Sbjct:   446 FLILAGIAVLAVIFVIVFVPETQGLTFSEVE 476

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0005366 "myo-inositol:hydrogen symporter activity" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0015798 "myo-inositol transport" evidence=IMP

TIGR_CMR|CPS_0245 CPS_0245 "sugar transporter family protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 295 (108.9 bits), Expect = 5.3e-38, Sum P(2) = 5.3e-38
 Identities = 77/272 (28%), Positives = 138/272 (50%)

Query:   161 VAALYVTESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELL 220
             V  +++ ESP +L  +G+  EA   F+++  G      + E+ K   GD    ++ +  +
Sbjct:   209 VGVIFIPESPRYLVAQGKIEEARTIFKRIATGVE-NEQIEEVKKSLHGDKKPSIR-DLFI 266

Query:   221 YGRH--FRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGL--SSGL-ANVFVGIANLLG 275
              G+     +++IG  L   QQ  GIN +FY+ + ++++AG   S  L  N+  G  N++ 
Sbjct:   267 DGKKKIHPIIWIGIGLSVFQQFVGINVVFYYGAELWQAAGFDESQSLFINLIAGTTNIIS 326

Query:   276 SVVAMVLMDKLGRKALLQWSFFSMAVSM-AIQVAASSSYIPGSASLYLS--VG--GMLM- 329
             + +A+ L+DK+GRK LL      M +S+ A+     +  +  +  L LS   G   ++M 
Sbjct:   327 TFIAIALVDKIGRKPLLLVGSVGMFISLGALTFIFGTGGLDEAGKLALSDTTGTVALIMA 386

Query:   330 --FVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGXXXXXXXXXXXXX 387
               FV+ F L  GP+  +LL E+F +RIR  A+A+  S  W+ NF +              
Sbjct:   387 NLFVVFFGLSWGPIVWVLLGEMFNNRIRGAALAIAASAQWLANFAITMTFPILLGSFGLA 446

Query:   388 XXYSIFGTFCLMAVAFVKRNVVETKGKSLQEI 419
               Y ++    L+++ FV + + ET+G  L+E+
Sbjct:   447 GAYGLYTVSALLSIFFVIKYIKETRGIRLEEM 478

GO:0008643 "carbohydrate transport" evidence=ISS

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FYG3	PLST2_ARATH	No assigned EC number	0.6303	0.9906	0.8580	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_LG_I0256 hypothetical protein (489 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	427
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	2e-51
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	3e-46
PRK10077	479	PRK10077, xylE, D-xylose transporter XylE; Provisi	1e-41
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	1e-10
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	4e-10
PRK10077	479	PRK10077, xylE, D-xylose transporter XylE; Provisi	4e-09
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	5e-08
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	1e-05
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	9e-05
TIGR00898	505	TIGR00898, 2A0119, cation transport protein	1e-04
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	8e-04
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	0.001
pfam13347	425	pfam13347, MFS_2, MFS/sugar transport protein	0.002
TIGR00883	394	TIGR00883, 2A0106, metabolite-proton symporter	0.003
pfam13347	425	pfam13347, MFS_2, MFS/sugar transport protein	0.004

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score =  178 bits (454), Expect = 2e-51
 Identities = 128/450 (28%), Positives = 201/450 (44%), Gaps = 81/450 (18%)

Query: 53  VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAE---------GLVVSMCLGGAFI 103
            LVA L  FLFGY  GV+   L  I     F   T            GL+VS+   G  I
Sbjct: 2   ALVAALGGFLFGYDTGVIGAFLTLIKFFKRFGALTSIGACAASTVLSGLIVSIFSVGCLI 61

Query: 104 GSTLSGWIADGVGRRRAFQLCALPMII-----GASISATT------RNLIGM-------- 144
           GS  +G + D  GR+++  +  +  +I     G +   +       R ++G+        
Sbjct: 62  GSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGLGVGGISVL 121

Query: 145 ------------LLGRFVVG-------------------------------TGMGLGPTV 161
                       L G                                     G+   P +
Sbjct: 122 VPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIPLGLQFVPAI 181

Query: 162 AALY----VTESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAE-LSKLDRGDDGDIVKF 216
             L     + ESP WL  KG+  EA A   KL G S V   + E    L+R  + +   +
Sbjct: 182 LLLIGLLFLPESPRWLVLKGKLEEARAVLAKLRGVSDVDQEIQEEKDSLERSVEAEKASW 241

Query: 217 EELLYGRHFR-VVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLS-SGLANVFVGIANLL 274
            EL  G+  R  + +G  L   QQL+GINAIFY+S ++F++ GLS S L  + VG+ N +
Sbjct: 242 LELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFETLGLSDSLLVTIIVGVVNFV 301

Query: 275 GSVVAMVLMDKLGRKALLQWSFFSMAVSMAI-QVAASSSYIPGSASLYLSVGGMLMFVLT 333
            + +A+ L+D+ GR+ LL      MA+   +  VA         A   +++  +L+F+  
Sbjct: 302 FTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLGVALLGVAKSKGAG-IVAIVFILLFIAF 360

Query: 334 FALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIF 393
           FALG GPVP +++ E+FP  +R KAMA+  + +W+ NF +G LF  +   +G   ++ +F
Sbjct: 361 FALGWGPVPWVIVSELFPLGVRPKAMAIATAANWLANFLIGFLFPIITGAIGGY-VFLVF 419

Query: 394 GTFCLMAVAFVKRNVVETKGKSLQEIEIAL 423
               ++ + FV   V ETKG++L+EI+   
Sbjct: 420 AGLLVLFILFVFFFVPETKGRTLEEIDELF 449

Length = 449

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score =  165 bits (420), Expect = 3e-46
 Identities = 100/314 (31%), Positives = 162/314 (51%), Gaps = 15/314 (4%)

Query: 121 FQLCALPMIIGASISATTRNLIGMLLG-RFVVG-TGMGLGPTVAALY-VTESPHWLYKKG 177
           +QL     I+ A    + +  +   LG R  +G   +  G     L+ + ESP WL  KG
Sbjct: 168 YQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKG 227

Query: 178 RTAEAEAEFEKLLGGSHV-KSSLAELS----KLDRGDDGDIVKFEELLY--GRHFRVVFI 230
           R  EA     +L G S   K  L EL     K           +  L     R  R +F+
Sbjct: 228 RVEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFL 287

Query: 231 GSTLFALQQLSGINAIFYFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLG 287
           G  L   QQ +GINAI Y+S ++F++AG+S+    L ++ VG  N   + VA+ L+D+ G
Sbjct: 288 GVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFG 347

Query: 288 RKALLQWSFFSMAVSMAI--QVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLL 345
           R+ LL      MA+ + +   + AS       +S  +++  +L+F+  FA+G GPVP ++
Sbjct: 348 RRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVI 407

Query: 346 LPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVK 405
           + EIFP  +R K +++ ++ +W+ NF VG LF  +LE +G   ++  FG   ++ + FV 
Sbjct: 408 VSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVY 467

Query: 406 RNVVETKGKSLQEI 419
             + ETKG++L+EI
Sbjct: 468 FFLPETKGRTLEEI 481

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional

 Score =  153 bits (388), Expect = 1e-41
 Identities = 89/268 (33%), Positives = 141/268 (52%), Gaps = 21/268 (7%)

Query: 164 LYVTESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAEL-SKLDRGDDGDIVKFEELL-Y 221
            +V E+P +L  +G+  +AE    K++G +    +L E+   LD G         +LL +
Sbjct: 212 YFVPETPRYLMSRGKQEQAEGILRKIMGNTLATQALQEIKHSLDHG----RKTGGKLLMF 267

Query: 222 GRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLA---NVFVGIANLLGSVV 278
           G    V+ IG  L   QQ  GIN + Y++  +FK+ G S+ +A    + VG+ NL  +V+
Sbjct: 268 GV--GVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVL 325

Query: 279 AMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGA 338
           A++ +DK GRK L       MA+ M     A  +  PG     +++  ML +V  FA+  
Sbjct: 326 AIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPG----IVALLSMLFYVAAFAMSW 381

Query: 339 GPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLF------LRLLEQLGPQLLYSI 392
           GPV  +LL EIFP+ IR KA+A+ ++  W+ N+FV   F        L+        Y I
Sbjct: 382 GPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWI 441

Query: 393 FGTFCLMAVAFVKRNVVETKGKSLQEIE 420
           +G   ++A  F+ + V ETKGK+L+E+E
Sbjct: 442 YGCMGVLAALFMWKFVPETKGKTLEEME 469

Length = 479

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 61.9 bits (151), Expect = 1e-10
 Identities = 37/191 (19%), Positives = 63/191 (32%), Gaps = 14/191 (7%)

Query: 219 LLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSS----GLANVFVGIANLL 274
            L       + +   L       G   +  +     +     S    GL     G+  +L
Sbjct: 167 ALLLLFLLRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGIL 226

Query: 275 GSVVAMVLMDKLGRKALLQW-SFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLT 333
           G+++  +L D+LGR+ LL        A+ + +   A S  +   A L L  G    F   
Sbjct: 227 GALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPAL 286

Query: 334 FALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIF 393
             L           E+ P   R  A  +  +   +      LL   LL+  G   ++ I 
Sbjct: 287 LTL---------ASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLIL 337

Query: 394 GTFCLMAVAFV 404
               L+A   +
Sbjct: 338 AALALLAALLL 348

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score = 60.8 bits (148), Expect = 4e-10
 Identities = 36/124 (29%), Positives = 66/124 (53%), Gaps = 9/124 (7%)

Query: 54  LVATLSSFLFGYHLGVVNEPLESISLDLGFNGN------TLAEGLVVSMCLGGAFIGSTL 107
           L+A +   +FGY  GV+   L   + +  F         +   GLVVS+ L G FIG+  
Sbjct: 31  LIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALF 90

Query: 108 SGWIADGVGRRRAFQLCALPMIIGASISATTRNLIG---MLLGRFVVGTGMGLGPTVAAL 164
           +GW++D  GR+++  + AL  +IGA +       +    +++GR ++G G+G+   +  +
Sbjct: 91  AGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPM 150

Query: 165 YVTE 168
           Y++E
Sbjct: 151 YLSE 154

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional

 Score = 58.2 bits (141), Expect = 4e-09
 Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 18/134 (13%)

Query: 53  VLVATLSSFLFGYHLGVVNEPLESI------SLDLGFNGNTLAEGLVVSMCLGGAFIGST 106
            LVATL   LFGY   V++  +ES+        +L  +      G  V+  L G  IG  
Sbjct: 14  TLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGA 73

Query: 107 LSGWIADGVGRRRAFQLCALPMIIGA-----------SISATTRNLIGML-LGRFVVGTG 154
           L G+ ++  GRR + ++ A+   I A           SI       +    + R + G G
Sbjct: 74  LGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIG 133

Query: 155 MGLGPTVAALYVTE 168
           +GL   ++ +Y+ E
Sbjct: 134 VGLASMLSPMYIAE 147

Length = 479

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 54.2 bits (131), Expect = 5e-08
 Identities = 39/116 (33%), Positives = 63/116 (54%), Gaps = 2/116 (1%)

Query: 53  VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIA 112
           +L+  L  FL G   G+++  L  ++ DLG + +    GL+VS    G  +GS L+G+++
Sbjct: 1   LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQA--GLIVSAFSLGYALGSLLAGYLS 58

Query: 113 DGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTE 168
           D  GRRR   L  L   +G+ + A   +L  +L+GRF++G G G     AA  + E
Sbjct: 59  DRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAE 114

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 35/135 (25%), Positives = 59/135 (43%), Gaps = 3/135 (2%)

Query: 37  TEVENTNPSWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSM 96
                  P  +  +  ++++ L   + GY L  +     +IS + G +   L  G + S 
Sbjct: 3   QNNIRKQPLSRYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQL--GFLFSA 60

Query: 97  CLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMG 156
            L G   G+   G +AD +GRRR      L   +   + A   N+  +L+ RF+ G G+G
Sbjct: 61  GLIGMAFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLG 120

Query: 157 -LGPTVAALYVTESP 170
            L P + AL    +P
Sbjct: 121 GLMPNLNALVSEYAP 135

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 43.8 bits (104), Expect = 9e-05
 Identities = 40/193 (20%), Positives = 75/193 (38%), Gaps = 23/193 (11%)

Query: 225 FRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMD 284
             ++F+G  L  L     ++      +     +   +GL      +   LGS++A  L D
Sbjct: 1   LLLLFLGFFLSGLD-RGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSD 59

Query: 285 KLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAG----- 339
           + GR+ +L       A+   +   ASS +              L+ V  F LG G     
Sbjct: 60  RFGRRRVLLLGLLLFALGSLLLAFASSLW--------------LLLVGRFLLGLGGGALY 105

Query: 340 PVPSLLLPEIFPSRIRAKAMAV---CMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTF 396
           P  + L+ E FP + R +A+ +      +  ++   +G L    L      L+ +I G  
Sbjct: 106 PAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLL 165

Query: 397 CLMAVAFVKRNVV 409
             + + F+ R ++
Sbjct: 166 LALLLLFLLRLLL 178

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 80/388 (20%), Positives = 135/388 (34%), Gaps = 91/388 (23%)

Query: 100 GAFIGSTLSGWIADGVGRRRA-----FQLCALPMIIGASISAT----TRNLIGMLLG--- 147
           G  +GS + G+++D  GR++             ++   S + T     R L+GM +G   
Sbjct: 139 GVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIW 198

Query: 148 ---------------RFVVGTGMGLG---------------------------PTVAAL- 164
                          R +VGT + +                            PT     
Sbjct: 199 VQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPDWRWLQLAVSLPTFLFFL 258

Query: 165 ---YVTESPHWLYKKGRTAEAEAEFEKL--LGGSHVKSSLAELSKL-DRGDDGDIVKFEE 218
              +V ESP WL  +GR  EA    +++  + G  + + +  LS   D         F +
Sbjct: 259 LSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLD 318

Query: 219 LLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSA-GLSSGLANVFVGIANLLGSV 277
           L    + R   +      L  L    A  Y+   +     G +  L     G+  L   +
Sbjct: 319 LFRTPNLRKTTL-----CLMMLWFTTAFSYYGLVLDLGNLGGNIYLDLFISGLVELPAKL 373

Query: 278 VAMVLMDKLGRKALLQWSFFSMAV-SMAIQVAASSSYIPGSASLYLSVGGMLM-FVLTFA 335
           + ++L+D+LGR+  +  S     V  + +       Y   +A   L   G+   F + + 
Sbjct: 374 ITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVY- 432

Query: 336 LGAGPVPSLLLPEIFPSRIRAKAMAVC--MSVHWVINFFVGLLFLRLLEQLG---PQLLY 390
                   L   E++P+ +R   + VC  M+        VG +    L  LG     L  
Sbjct: 433 --------LYTAELYPTVVRNLGVGVCSTMAR-------VGSIISPFLVYLGEKWLFLPL 477

Query: 391 SIFGTFCLMAVAFVKRNVVETKGKSLQE 418
            +FG   L+A       + ETKG  L E
Sbjct: 478 VLFGGLALLAGILT-LFLPETKGVPLPE 504

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 40.9 bits (96), Expect = 8e-04
 Identities = 37/204 (18%), Positives = 70/204 (34%), Gaps = 19/204 (9%)

Query: 228 VFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLG 287
           +F+ + L  L +     A+  + +     +    GL      +   L   +A  L D+ G
Sbjct: 1   LFLAAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFG 60

Query: 288 RKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAG-----PVP 342
           R+ +L       A+ + + + ASS +              L+ VL    G G     P  
Sbjct: 61  RRRVLLIGLLLFALGLLLLLFASSLW--------------LLLVLRVLQGLGGGALFPAA 106

Query: 343 SLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVA 402
           + L+ + FP   R +A+ +  +   +      LL   L    G +  + I     L+A  
Sbjct: 107 AALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALLAAV 166

Query: 403 FVKRNVVETKGKSLQEIEIALLPQ 426
                +     +S +       P 
Sbjct: 167 LAALLLPRPPPESKRPKPAEEAPA 190

Length = 346

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 40.5 bits (95), Expect = 0.001
 Identities = 27/116 (23%), Positives = 50/116 (43%), Gaps = 4/116 (3%)

Query: 53  VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIA 112
           + +A   + L    LG        ++ DLG +   +  GL+++    G  +   L+G ++
Sbjct: 1   LFLAAFLAGLGRSLLGPALPLY--LAEDLGISPTEI--GLLLTAFSLGYALAQPLAGRLS 56

Query: 113 DGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTE 168
           D  GRRR   +  L   +G  +     +L  +L+ R + G G G     AA  + +
Sbjct: 57  DRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIAD 112

Length = 346

>gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein

 Score = 39.9 bits (94), Expect = 0.002
 Identities = 25/101 (24%), Positives = 41/101 (40%), Gaps = 5/101 (4%)

Query: 85  GNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTR--NLI 142
           GN     +++ +    A +G+ L  W+A   G++R F L  L   IG  +       +L 
Sbjct: 254 GNAGLFSVLLLIGTIAAILGAPLWPWLAKRFGKKRTFLLGMLLAAIGLVLLFFLPPGSLW 313

Query: 143 GMLLGRFVVGTGMGL-GPTVAALY--VTESPHWLYKKGRTA 180
             L+   + G G+GL      A+   V +   W   K R  
Sbjct: 314 LFLVLVVLAGIGLGLATLLPWAMLADVVDYGEWKTGKRREG 354

This family is part of the major facilitator superfamily of membrane transport proteins. Length = 425

>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter

 Score = 39.2 bits (92), Expect = 0.003
 Identities = 31/146 (21%), Positives = 59/146 (40%), Gaps = 16/146 (10%)

Query: 223 RHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMV- 281
           +H +   +G  L      +      Y  + + ++ GLS   AN  + +  +L  ++  + 
Sbjct: 216 KHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLS---ANSALLV-LMLSLILFFIT 271

Query: 282 ------LMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFA 335
                 L D++GR+ +L        V  A+        +  S S  L    +L   L   
Sbjct: 272 IPLSGALSDRIGRRPVLII----FTVLAALLAVPLLMALLDSGSFTLFFFLVLGMALIGG 327

Query: 336 LGAGPVPSLLLPEIFPSRIRAKAMAV 361
           +  GP+ S L PE+FP+ +R    ++
Sbjct: 328 MYTGPMGSFL-PELFPTEVRYTGASL 352

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394

>gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein

 Score = 39.1 bits (92), Expect = 0.004
 Identities = 23/123 (18%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 223 RHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVL 282
           R   ++ +   L AL        + Y+ + V  +AGL S +  +   IA +LG+ +   L
Sbjct: 222 RPLLILLLLYLLNALAMAVRNGLLLYYFTYVLGNAGLFS-VLLLIGTIAAILGAPLWPWL 280

Query: 283 MDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVP 342
             + G+K          A+ + +       +     SL+L +  +++  +   L      
Sbjct: 281 AKRFGKKRTFLLGMLLAAIGLVL------LFFLPPGSLWLFLVLVVLAGIGLGLATLLPW 334

Query: 343 SLL 345
           ++L
Sbjct: 335 AML 337

This family is part of the major facilitator superfamily of membrane transport proteins. Length = 425

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	427
KOG0569	485	consensus Permease of the major facilitator superf	100.0
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	100.0
PRK10077	479	xylE D-xylose transporter XylE; Provisional	100.0
KOG0254	513	consensus Predicted transporter (major facilitator	100.0
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	100.0
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	100.0
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	100.0
TIGR00898	505	2A0119 cation transport protein.	99.97
PRK09705	393	cynX putative cyanate transporter; Provisional	99.97
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.97
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.97
PRK10642	490	proline/glycine betaine transporter; Provisional	99.97
PRK12307	426	putative sialic acid transporter; Provisional	99.97
PRK03545	390	putative arabinose transporter; Provisional	99.97
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.97
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.97
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.96
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.96
PRK11663	434	regulatory protein UhpC; Provisional	99.96
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.96
PRK05122	399	major facilitator superfamily transporter; Provisi	99.96
PRK03633	381	putative MFS family transporter protein; Provision	99.96
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.96
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.96
TIGR00891	405	2A0112 putative sialic acid transporter.	99.96
PRK15075	434	citrate-proton symporter; Provisional	99.96
PRK12382	392	putative transporter; Provisional	99.96
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.96
PRK10091	382	MFS transport protein AraJ; Provisional	99.96
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.96
PRK09952	438	shikimate transporter; Provisional	99.96
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.95
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.95
PRK03699	394	putative transporter; Provisional	99.95
PRK03893	496	putative sialic acid transporter; Provisional	99.95
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.95
PRK10504	471	putative transporter; Provisional	99.95
PRK10489	417	enterobactin exporter EntS; Provisional	99.95
TIGR00893	399	2A0114 d-galactonate transporter.	99.95
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.95
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.94
PRK09874	408	drug efflux system protein MdtG; Provisional	99.94
PRK10133	438	L-fucose transporter; Provisional	99.94
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.94
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.94
PLN00028	476	nitrate transmembrane transporter; Provisional	99.94
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.94
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.93
PRK11043	401	putative transporter; Provisional	99.93
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.93
TIGR00895	398	2A0115 benzoate transport.	99.93
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.93
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.93
TIGR00900	365	2A0121 H+ Antiporter protein.	99.93
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.93
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.93
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.93
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.92
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.92
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.92
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.92
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.92
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.92
PRK10054	395	putative transporter; Provisional	99.92
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.92
PRK09528	420	lacY galactoside permease; Reviewed	99.92
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.91
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.91
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.91
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.91
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.91
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.9
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.9
PRK11010	491	ampG muropeptide transporter; Validated	99.89
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.89
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.89
PRK15011	393	sugar efflux transporter B; Provisional	99.88
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.88
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.88
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.87
KOG2532	466	consensus Permease of the major facilitator superf	99.87
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.87
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.87
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.86
PRK11902	402	ampG muropeptide transporter; Reviewed	99.86
KOG2533	495	consensus Permease of the major facilitator superf	99.85
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.85
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.85
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.84
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.84
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.84
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.82
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.81
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.81
TIGR00805	633	oat sodium-independent organic anion transporter.	99.77
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.77
PTZ00207	591	hypothetical protein; Provisional	99.77
TIGR00901	356	2A0125 AmpG-related permease.	99.75
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.75
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.74
PRK09848	448	glucuronide transporter; Provisional	99.72
KOG2615	451	consensus Permease of the major facilitator superf	99.71
PRK09669	444	putative symporter YagG; Provisional	99.69
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.67
PRK10429	473	melibiose:sodium symporter; Provisional	99.66
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.65
PF13347	428	MFS_2: MFS/sugar transport protein	99.65
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.64
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.63
COG2211	467	MelB Na+/melibiose symporter and related transport	99.61
KOG2563	480	consensus Permease of the major facilitator superf	99.57
PRK11462	460	putative transporter; Provisional	99.57
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.55
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.55
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.54
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.53
PRK11663	434	regulatory protein UhpC; Provisional	99.53
PRK10054	395	putative transporter; Provisional	99.52
PRK03545	390	putative arabinose transporter; Provisional	99.5
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.5
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.5
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.49
TIGR00895	398	2A0115 benzoate transport.	99.48
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.47
TIGR00893	399	2A0114 d-galactonate transporter.	99.46
TIGR00891	405	2A0112 putative sialic acid transporter.	99.45
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.45
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.45
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.44
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.44
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.44
PRK10489	417	enterobactin exporter EntS; Provisional	99.43
PLN00028	476	nitrate transmembrane transporter; Provisional	99.43
PRK10091	382	MFS transport protein AraJ; Provisional	99.43
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.43
PRK03699	394	putative transporter; Provisional	99.43
TIGR00900	365	2A0121 H+ Antiporter protein.	99.42
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.41
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.41
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.41
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.4
PRK10504	471	putative transporter; Provisional	99.4
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.4
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.4
PRK12307	426	putative sialic acid transporter; Provisional	99.4
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.4
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.39
PRK09874	408	drug efflux system protein MdtG; Provisional	99.39
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.39
PRK05122	399	major facilitator superfamily transporter; Provisi	99.38
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.36
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.36
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.36
PRK03893	496	putative sialic acid transporter; Provisional	99.36
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.35
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.35
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.35
PRK12382	392	putative transporter; Provisional	99.35
KOG3762	618	consensus Predicted transporter [General function	99.34
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.34
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.34
PRK11043	401	putative transporter; Provisional	99.33
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.33
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.32
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.32
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.31
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.31
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.28
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.28
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.26
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.26
PRK09705	393	cynX putative cyanate transporter; Provisional	99.26
PRK10642	490	proline/glycine betaine transporter; Provisional	99.25
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.25
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.24
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.24
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.24
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.23
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.23
PRK15075	434	citrate-proton symporter; Provisional	99.21
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.2
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.19
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.19
PRK09528	420	lacY galactoside permease; Reviewed	99.18
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.18
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.17
PRK09952	438	shikimate transporter; Provisional	99.17
KOG2615	451	consensus Permease of the major facilitator superf	99.17
TIGR00805	633	oat sodium-independent organic anion transporter.	99.16
PRK03633	381	putative MFS family transporter protein; Provision	99.15
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.15
TIGR00901	356	2A0125 AmpG-related permease.	99.15
PRK10133	438	L-fucose transporter; Provisional	99.15
PRK15011	393	sugar efflux transporter B; Provisional	99.14
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.13
PRK11010	491	ampG muropeptide transporter; Validated	99.12
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	99.12
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.11
PTZ00207	591	hypothetical protein; Provisional	99.11
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.09
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.09
PRK11902	402	ampG muropeptide transporter; Reviewed	99.08
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.06
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.04
TIGR00898	505	2A0119 cation transport protein.	99.02
KOG2532	466	consensus Permease of the major facilitator superf	98.97
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	98.96
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	98.96
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	98.94
KOG2816	463	consensus Predicted transporter ADD1 (major facili	98.94
KOG3626	735	consensus Organic anion transporter [Secondary met	98.94
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	98.92
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	98.9
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	98.89
KOG0254	513	consensus Predicted transporter (major facilitator	98.85
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	98.82
KOG0569	485	consensus Permease of the major facilitator superf	98.81
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.8
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	98.78
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	98.78
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.74
KOG3098	461	consensus Uncharacterized conserved protein [Funct	98.71
KOG2533	495	consensus Permease of the major facilitator superf	98.7
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	98.67
PF13347	428	MFS_2: MFS/sugar transport protein	98.64
PRK09669	444	putative symporter YagG; Provisional	98.62
PRK10429	473	melibiose:sodium symporter; Provisional	98.61
KOG2816	463	consensus Predicted transporter ADD1 (major facili	98.6
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.5
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.45
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	98.45
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.44
PRK11462	460	putative transporter; Provisional	98.43
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.43
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	98.39
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	98.32
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	98.32
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.31
KOG2325	488	consensus Predicted transporter/transmembrane prot	98.3
PF12832	77	MFS_1_like: MFS_1 like family	98.28
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	98.24
PRK09848	448	glucuronide transporter; Provisional	98.23
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.22
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.2
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	98.1
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	98.04
KOG2563	480	consensus Permease of the major facilitator superf	98.04
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.03
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.0
COG2211	467	MelB Na+/melibiose symporter and related transport	97.95
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	97.91
COG0477	338	ProP Permeases of the major facilitator superfamil	97.87
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	97.75
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	97.61
KOG0637	498	consensus Sucrose transporter and related proteins	97.57
COG2270	438	Permeases of the major facilitator superfamily [Ge	97.56
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	97.55
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	97.2
PF12832	77	MFS_1_like: MFS_1 like family	97.18
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	97.06
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	97.0
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	96.98
COG0477	338	ProP Permeases of the major facilitator superfamil	96.82
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	96.81
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	96.81
KOG3626	735	consensus Organic anion transporter [Secondary met	96.81
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	96.8
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	96.71
PRK03612	521	spermidine synthase; Provisional	96.64
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	96.22
KOG3810	433	consensus Micronutrient transporters (folate trans	96.19
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	95.99
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	95.73
KOG3097	390	consensus Predicted membrane protein [Function unk	95.3
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	95.15
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	94.64
KOG3098	461	consensus Uncharacterized conserved protein [Funct	94.37
KOG0637	498	consensus Sucrose transporter and related proteins	93.75
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	93.68
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	93.54
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	93.44
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	93.35
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	93.23
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	92.68
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	92.2
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	91.31
KOG3762	618	consensus Predicted transporter [General function	91.26
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	87.38
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	86.41
KOG2881	294	consensus Predicted membrane protein [Function unk	85.81
COG3202	509	ATP/ADP translocase [Energy production and convers	84.77
COG4262	508	Predicted spermidine synthase with an N-terminal m	83.79
KOG2601	503	consensus Iron transporter [Inorganic ion transpor	83.66
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	81.05

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=100.00  E-value=3.1e-36  Score=272.02  Aligned_cols=379  Identities=35%  Similarity=0.565  Sum_probs=310.9

Q ss_pred             chhHHHHHHHHHHhhhhhccccccccchhhhhh--------hccCC--CCc--hhHHHHHHHHHHHHHHHHHHhHHhhhc
Q 014286           46 WKLSFPHVLVATLSSFLFGYHLGVVNEPLESIS--------LDLGF--NGN--TLAEGLVVSMCLGGAFIGSTLSGWIAD  113 (427)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--------~~~~~--~~~--~~~~g~~~s~~~l~~~~~~~~~G~l~d  113 (427)
                      .++.......++++.+-.+|..+.+++..+.+.        +.++.  +++  +..++.+.+++.+|.++|+.+.|.++|
T Consensus         6 t~~L~~~~~~~~~gsf~~Gy~~~~iNap~~~i~~f~n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~   85 (485)
T KOG0569|consen    6 TRRLLLAVIVATLGSFQFGYNIGVVNAPQELIKSFINETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLAD   85 (485)
T ss_pred             cHHHHHHHHHHHHhchhhhhhheecCchHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455666677777888999999988765543        34453  322  233688899999999999999999999


Q ss_pred             ccchhHHHHHhhHHHHHHHHHHHh---hhhhHHHHHHHHHHhhhccccccceeeccc-----------------------
Q 014286          114 GVGRRRAFQLCALPMIIGASISAT---TRNLIGMLLGRFVVGTGMGLGPTVAALYVT-----------------------  167 (427)
Q Consensus       114 r~Grr~~l~~~~~~~~~~~~~~~~---~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~-----------------------  167 (427)
                      |+|||..+.++.++..++.++..+   .+++++++++|++.|+..|......+.|+.                       
T Consensus        86 ~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~  165 (485)
T KOG0569|consen   86 RFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGI  165 (485)
T ss_pred             hhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHH
Confidence            999999999999988888877766   578999999999999999977777766665                       


Q ss_pred             ----------------------------------------CCchhhhh-cCChHHHHHHHHHHhCCCchhhHHHHHh---
Q 014286          168 ----------------------------------------ESPHWLYK-KGRTAEAEAEFEKLLGGSHVKSSLAELS---  203 (427)
Q Consensus       168 ----------------------------------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  203 (427)
                                                              |||||+.. +++.++|.+.+..+.+..+...+.++..   
T Consensus       166 ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~  245 (485)
T KOG0569|consen  166 LLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREI  245 (485)
T ss_pred             HHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHH
Confidence                                                    99999998 8999999999999999876554443322   


Q ss_pred             hhhcCCCCCcchhHhhhcccchh-HHHHHHHHHHhhhccchhHHHHhHHHHHHhcCCChh---HHHHHHHHHHHHHHHhH
Q 014286          204 KLDRGDDGDIVKFEELLYGRHFR-VVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSG---LANVFVGIANLLGSVVA  279 (427)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~  279 (427)
                      +.++.+++++.+++++++++..| ...+...+....++.+.+.+.+|...++++.|++..   ......++...+.++++
T Consensus       246 ~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~  325 (485)
T KOG0569|consen  246 EEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVS  325 (485)
T ss_pred             HHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            22223334677899999987554 466777788888999999999999999999999877   67778888999999999


Q ss_pred             hhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCC-CchhHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhH
Q 014286          280 MVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPG-SASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKA  358 (427)
Q Consensus       280 g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~  358 (427)
                      .++.||.|||++++.+..++.+..+++.......... ++..+..+.+.+++...++.+.+|+.+.+.+|++|++.|+.+
T Consensus       326 ~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa  405 (485)
T KOG0569|consen  326 PFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAA  405 (485)
T ss_pred             HHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHH
Confidence            9999999999999999999888887776654432212 233345577888889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHhhCC
Q 014286          359 MAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQEIEIALLP  425 (427)
Q Consensus       359 ~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (427)
                      .++.....++..++....+..+.+..|. ..|+.+.+.+++..+..++++||||+|+.+|+.++.++
T Consensus       406 ~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~~~  471 (485)
T KOG0569|consen  406 QSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEELEK  471 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHh
Confidence            9999999999999999999999999998 68888999999999999999999999999888766543

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=100.00  E-value=1e-33  Score=272.23  Aligned_cols=357  Identities=19%  Similarity=0.206  Sum_probs=257.2

Q ss_pred             CchhHHHHHHHHHHhhhhhccccccccchhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHh
Q 014286           45 SWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLC  124 (427)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~  124 (427)
                      ..+..|.++++++++.+..+++...+++++|.+.++++++..+.  +++.+++.++.+++++++|+++||+|||++++++
T Consensus       161 ~~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~--g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~  238 (742)
T TIGR01299       161 HGRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGK--GMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLIC  238 (742)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence            34566777888888889999999999999999999999876555  9999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccceeec---------------------------------------
Q 014286          125 ALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALY---------------------------------------  165 (427)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~---------------------------------------  165 (427)
                      ++++++++++++++++++.++++|+++|++.|+..+....+                                       
T Consensus       239 lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~  318 (742)
T TIGR01299       239 LSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHY  318 (742)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999877332222222                                       


Q ss_pred             -----------------------------------ccCCchhhhhcCChHHHHHHHHHHhCCCchh----hH---HHHHh
Q 014286          166 -----------------------------------VTESPHWLYKKGRTAEAEAEFEKLLGGSHVK----SS---LAELS  203 (427)
Q Consensus       166 -----------------------------------i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~  203 (427)
                                                         ++|+|+|+..+++.+++...+..+...+...    ..   ..+.+
T Consensus       319 G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~  398 (742)
T TIGR01299       319 GWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIK  398 (742)
T ss_pred             cchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHH
Confidence                                               2388888888888888888887776543210    00   00000


Q ss_pred             h--hhc------CCCCC----------------cchhHhhhcccchhHHHHHHHHHHhhhccchhHHHHhHHHHHHhc--
Q 014286          204 K--LDR------GDDGD----------------IVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSA--  257 (427)
Q Consensus       204 ~--~~~------~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  257 (427)
                      .  ..+      .+...                ...++++++.+.++..++...++++..+ .+..+..|.|.++++.  
T Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~wf~~~~-~yygl~~w~P~~~~~~~~  477 (742)
T TIGR01299       399 TIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGVWFTLSF-GYYGLSVWFPDMIKHLQA  477 (742)
T ss_pred             HhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence            0  000      00000                0135566766666666766666665555 4555566666553221  


Q ss_pred             ----------------------------------------CC--------------------------------------
Q 014286          258 ----------------------------------------GL--------------------------------------  259 (427)
Q Consensus       258 ----------------------------------------g~--------------------------------------  259 (427)
                                                              |+                                      
T Consensus       478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~  557 (742)
T TIGR01299       478 DDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFE  557 (742)
T ss_pred             HHHHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccchhhhhcc
Confidence                                                    00                                      


Q ss_pred             --------------------------------C------hhHHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHH
Q 014286          260 --------------------------------S------SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAV  301 (427)
Q Consensus       260 --------------------------------~------~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~  301 (427)
                                                      +      ......+.+++.+++.+++|+++||+|||+++..+.++.++
T Consensus       558 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai  637 (742)
T TIGR01299       558 NTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCI  637 (742)
T ss_pred             ccchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence                                            0      01224456688889999999999999999999999888888


Q ss_pred             HHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 014286          302 SMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLL  381 (427)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~  381 (427)
                      +.+++.+....        ...++..++++++.. +..+...++++|++|++.|++++|+.+....+|++++|.+.+.+.
T Consensus       638 ~~ll~~~~~s~--------~~ll~~~~l~g~~~~-~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~  708 (742)
T TIGR01299       638 SCFFLSFGNSE--------SAMIALLCLFGGLSI-AAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFV  708 (742)
T ss_pred             HHHHHHHHccH--------HHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            87776654321        122222233333333 344566679999999999999999999999999999999999887


Q ss_pred             HHhccchhHHHHHHHHHHHHHHHHHhccCCCCCC
Q 014286          382 EQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKS  415 (427)
Q Consensus       382 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  415 (427)
                      +. +...+|++.+++.++++++.+ ++||++++.
T Consensus       709 ~~-~~~~pf~i~a~~lll~~ll~~-~LPET~~~~  740 (742)
T TIGR01299       709 GI-TKAAPILFASAALACGGLLAL-KLPDTRGQV  740 (742)
T ss_pred             Hh-hhHHHHHHHHHHHHHHHHHHH-hCCCCcccc
Confidence            74 456677777777777666554 568888764

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=100.00  E-value=3.2e-32  Score=258.11  Aligned_cols=369  Identities=30%  Similarity=0.466  Sum_probs=248.5

Q ss_pred             hhHHHHHHHHHHhhhhhccccccccchhhhhhhcc--------CCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchh
Q 014286           47 KLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDL--------GFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRR  118 (427)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--------~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr  118 (427)
                      +.....++++.++.+.++++...+++..|.+++++        +.+  ..+.+++.+++.++..++++++|+++||+|||
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr   85 (479)
T PRK10077          8 SYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAA--NSLLGFCVASALIGCIIGGALGGYCSNRFGRR   85 (479)
T ss_pred             hHHHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence            34455677788899999999999999999999988        444  34459999999999999999999999999999


Q ss_pred             HHHHHhhHHHHHHHHHHHhh------------hhhHHHHHHHHHHhhhccccccceeecccCCchhhhhcCChHHHHHHH
Q 014286          119 RAFQLCALPMIIGASISATT------------RNLIGMLLGRFVVGTGMGLGPTVAALYVTESPHWLYKKGRTAEAEAEF  186 (427)
Q Consensus       119 ~~l~~~~~~~~~~~~~~~~~------------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  186 (427)
                      ++++.+.++++++.++++++            ++++.++++|+++|++.|...+...+++.|.    ..++++..+....
T Consensus        86 ~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~----~~~~~rg~~~~~~  161 (479)
T PRK10077         86 DSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEI----APAHIRGKLVSFN  161 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhh----CChhhhhHHHHHH
Confidence            99999999999999888863            2356789999999999999999999888862    1111111110000


Q ss_pred             ------H---------------------------------------H--HhCCCchhhHHHHHhhhh---------cCCC
Q 014286          187 ------E---------------------------------------K--LLGGSHVKSSLAELSKLD---------RGDD  210 (427)
Q Consensus       187 ------~---------------------------------------~--~~~~~~~~~~~~~~~~~~---------~~~~  210 (427)
                            .                                       .  .....+.+.......+.+         ...+
T Consensus       162 ~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~  241 (479)
T PRK10077        162 QFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNT  241 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCCh
Confidence                  0                                       0  000000000000000000         0000


Q ss_pred             CCc---chhHhhhcc-----cch-----hHHHHHHHHHHhhhccchhHHHHhHHHHHHhcCCChh---HHHHHHHHHHHH
Q 014286          211 GDI---VKFEELLYG-----RHF-----RVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSG---LANVFVGIANLL  274 (427)
Q Consensus       211 ~~~---~~~~~~~~~-----~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~  274 (427)
                      +.+   ...++..++     +..     ...........+......+...++.|.+.+..|.+..   ......++..++
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i  321 (479)
T PRK10077        242 LATQALQEIKHSLDHGRKTGGKLLMFGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIALLQTIIVGVINLT  321 (479)
T ss_pred             hHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence            000   011111110     000     0011111122222333344556777888888887644   455567788889


Q ss_pred             HHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcccchhhhhccCcCCccc
Q 014286          275 GSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRI  354 (427)
Q Consensus       275 ~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  354 (427)
                      +.++.++++||+|||+.+..+..+.+++.+.+......    +.........+.+++.+++....|..+.++.|.+|+++
T Consensus       322 ~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~  397 (479)
T PRK10077        322 FTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT----QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAI  397 (479)
T ss_pred             HHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhc----CcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhH
Confidence            99999999999999999999998888887766544321    11112233344455555555556777779999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHH------HHhccchhHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHhhCC
Q 014286          355 RAKAMAVCMSVHWVINFFVGLLFLRLL------EQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQEIEIALLP  425 (427)
Q Consensus       355 ~g~~~g~~~~~~~~g~~~~~~~~g~l~------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (427)
                      |+++.|+.+...+++.++++.+.+.+.      +..++...|.+.+++++++.++.+.+.+|+|+++.+|.+++.++
T Consensus       398 r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~  474 (479)
T PRK10077        398 RGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEALWEP  474 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHhh
Confidence            999999999999999999877776544      56788888888888888887777778899999998887766543

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=100.00  E-value=1.5e-31  Score=253.58  Aligned_cols=379  Identities=33%  Similarity=0.587  Sum_probs=297.7

Q ss_pred             hhHHHHHHHHHHhhhhhccc--cccccchhhhhhhccCCCC---ch--hHHHHHHHHHHHHHHHHHHhHHhhhcccchhH
Q 014286           47 KLSFPHVLVATLSSFLFGYH--LGVVNEPLESISLDLGFNG---NT--LAEGLVVSMCLGGAFIGSTLSGWIADGVGRRR  119 (427)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~---~~--~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~  119 (427)
                      +..........++.+..+++  .+...+..+.+.++...+.   ++  .+.+|+.+++.++..++++++|+++|++|||+
T Consensus        41 ~~~~~~~~~~~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~  120 (513)
T KOG0254|consen   41 PFVILLALVAALGGLLFGYDGDIGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRKK  120 (513)
T ss_pred             eehHHHHHHHHHHHHHhCcccccccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence            33444566677777888886  6677777777777543221   12  23489999999999999999999999999999


Q ss_pred             HHHHhhHHHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccceeeccc--------------------------------
Q 014286          120 AFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVT--------------------------------  167 (427)
Q Consensus       120 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~--------------------------------  167 (427)
                      .++++.+++.++++++++++|+++++++|+++|+|.|+.....+.|+.                                
T Consensus       121 ~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~  200 (513)
T KOG0254|consen  121 TLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYG  200 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            999999999999999999999999999999999999976666665555                                


Q ss_pred             ------------------------------CCchhhhhcCChHHHHHHHHHHhCC--CchhhHHHHHhhhh--cC-CCCC
Q 014286          168 ------------------------------ESPHWLYKKGRTAEAEAEFEKLLGG--SHVKSSLAELSKLD--RG-DDGD  212 (427)
Q Consensus       168 ------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~-~~~~  212 (427)
                                                    |+|+|+..+++..++...+..+.+.  .....+..+.+...  +. ....
T Consensus       201 ~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (513)
T KOG0254|consen  201 TSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEG  280 (513)
T ss_pred             hccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccc
Confidence                                          7888999989999999988888883  33333333322111  11 1111


Q ss_pred             cchhHhhhcccchhHHHHHHHHHHhhhccchhHHHHhHHHHHHhcCCChh--HHHHHHHHHHHHHHHhHhhhhcccCccc
Q 014286          213 IVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSG--LANVFVGIANLLGSVVAMVLMDKLGRKA  290 (427)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~g~l~d~~g~~~  290 (427)
                      +..++++++....++..++..+..++++.+.+...+|.+.+++..|.+..  ......++..+++..++..+.||+|||+
T Consensus       281 ~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~~~~~~~~~~v~~~~t~~~~~lvd~~gRr~  360 (513)
T KOG0254|consen  281 KASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDTFLASIILGVVNFLGTLVATYLVDRFGRRK  360 (513)
T ss_pred             cccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence            22466666655677788888999999999999999999999999888854  5667777888888899999999999999


Q ss_pred             hhhhhhHHHHHHHHHHHHHhhcCCC----CCchhHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHH
Q 014286          291 LLQWSFFSMAVSMAIQVAASSSYIP----GSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVH  366 (427)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~  366 (427)
                      .++.+...+.++.++++........    .....+..+....++...+..+..++.+.+.+|.+|.+.|+.+.++.....
T Consensus       361 lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n  440 (513)
T KOG0254|consen  361 LLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVN  440 (513)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHH
Confidence            9999999999999888876554322    234456777788888888999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH-HHHHhccCCCCCCHHHHHHhhCC
Q 014286          367 WVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVA-FVKRNVVETKGKSLQEIEIALLP  425 (427)
Q Consensus       367 ~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  425 (427)
                      ++...+.......+.+..+....|..++.++.+... ..+++.||+|+++.+|+++..++
T Consensus       441 ~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~~~~~  500 (513)
T KOG0254|consen  441 WLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINELFEE  500 (513)
T ss_pred             HHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHHHHHc
Confidence            998887777776666665544566677777766666 67788999999999998875543

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=100.00  E-value=5.8e-32  Score=256.55  Aligned_cols=370  Identities=19%  Similarity=0.265  Sum_probs=237.8

Q ss_pred             CCchhHHHHHHHHHHhhhhhccccccccchhhhhhhcc-C--CCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHH
Q 014286           44 PSWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDL-G--FNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRA  120 (427)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~--~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~  120 (427)
                      +..+..+..+.+++++.+.++++...++.+.|.+.+++ +  ...+..+.+++.+.+.++..++++++|+++||+|||++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~   88 (502)
T TIGR00887         9 PFGWQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRV   88 (502)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHH
Confidence            33456666788889999999999999999999887753 1  11233445899999999999999999999999999999


Q ss_pred             HHHhhHHHHHHHHHHHhhhh------hHHHHHHHHHHhhhccccccceeecccC--------------------------
Q 014286          121 FQLCALPMIIGASISATTRN------LIGMLLGRFVVGTGMGLGPTVAALYVTE--------------------------  168 (427)
Q Consensus       121 l~~~~~~~~~~~~~~~~~~~------~~~l~~~r~l~G~~~g~~~~~~~~~i~~--------------------------  168 (427)
                      +.++++++.+++++++++++      ++.++++|+++|++.|...+....++.|                          
T Consensus        89 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~  168 (502)
T TIGR00887        89 YGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGA  168 (502)
T ss_pred             HHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999876      7899999999999998666666665553                          


Q ss_pred             ----------------------------------------------------------CchhhhhcCChH-HHHHHHHHH
Q 014286          169 ----------------------------------------------------------SPHWLYKKGRTA-EAEAEFEKL  189 (427)
Q Consensus       169 ----------------------------------------------------------~~~~~~~~~~~~-~~~~~~~~~  189 (427)
                                                                                ||||+..+++.+ ++...+...
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~  248 (502)
T TIGR00887       169 IVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSAV  248 (502)
T ss_pred             HHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHHH
Confidence                                                                      222222222211 111111111


Q ss_pred             hCCCchhhHHHHHhhhhcCCCCCcchhHhhhccc---chhHHHHHHH-HHHhhhccchhHHHHhHHHHHHhcCCChhH--
Q 014286          190 LGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGR---HFRVVFIGST-LFALQQLSGINAIFYFSSSVFKSAGLSSGL--  263 (427)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--  263 (427)
                      ...... .+.++.++.+++++..+.+++++++++   +.++..+... ..+.... .+.....+.|.+++..|.+...  
T Consensus       249 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~y~~~~~~p~i~~~~G~~~~~~~  326 (502)
T TIGR00887       249 LQVKIE-AEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDI-AFYGVNLNQKVILSAIGYSPPAAT  326 (502)
T ss_pred             hccccc-cCcccccchhccccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-HHHccccccHHHHHHHcCCCCccc
Confidence            100000 000000000000001113466666532   1112222211 2222111 2223344566776777765320  


Q ss_pred             -------------HHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHH
Q 014286          264 -------------ANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMF  330 (427)
Q Consensus       264 -------------~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (427)
                                   ......++.+++.++.++++||+|||+.+..+..+.+++..++.......   ...  .......+.
T Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~---~~~--~~~~~~~~~  401 (502)
T TIGR00887       327 NNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHL---STH--GFLAIYVLA  401 (502)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhc---chh--HHHHHHHHH
Confidence                         12333456667888999999999999998888877777666555433110   001  111112222


Q ss_pred             HHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH----------hccchhHHHHHHHHHHH
Q 014286          331 VLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQ----------LGPQLLYSIFGTFCLMA  400 (427)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~----------~g~~~~~~~~~~~~~~~  400 (427)
                      ...++.+..+..+.+..|.+|++.|+++.|+.+.+++++++++|.+.+.+.+.          .++...|.+++++++++
T Consensus       402 ~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  481 (502)
T TIGR00887       402 QFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLG  481 (502)
T ss_pred             HHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHH
Confidence            22334556677777889999999999999999999999999999999999884          34455778888877776


Q ss_pred             HHHHHHhccCCCCCCHHHHHH
Q 014286          401 VAFVKRNVVETKGKSLQEIEI  421 (427)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~  421 (427)
                      .+.. ++.||++++++||+++
T Consensus       482 ~i~~-~~lpEt~~~~leei~~  501 (502)
T TIGR00887       482 ILFT-LLIPETKGKSLEELSG  501 (502)
T ss_pred             HHHh-eEeccCCCCCHHhhhC
Confidence            5544 5779999998877654

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=100.00  E-value=7.5e-31  Score=249.16  Aligned_cols=371  Identities=30%  Similarity=0.546  Sum_probs=251.2

Q ss_pred             hhHHHHHHHHHHhhhhhccccccccchhhhhhhccCCC------CchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHH
Q 014286           47 KLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFN------GNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRA  120 (427)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~  120 (427)
                      ++.+...+++.++.+...++...+.+.+|.+.++++.+      .++.+.+++.+++.++..++++++|+++||+|||++
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~  103 (481)
T TIGR00879        24 WKVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKS  103 (481)
T ss_pred             HHHHHHHHHHHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHH
Confidence            44444566677777888899999999999999998887      445666999999999999999999999999999999


Q ss_pred             HHHhhHHHHHHHHHHHhhh---hhHHHHHHHHHHhhhccccccceeecccCCch--h---------------------hh
Q 014286          121 FQLCALPMIIGASISATTR---NLIGMLLGRFVVGTGMGLGPTVAALYVTESPH--W---------------------LY  174 (427)
Q Consensus       121 l~~~~~~~~~~~~~~~~~~---~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~--~---------------------~~  174 (427)
                      ++.+.+++.++++++.+..   +++.++++|+++|++.+...+....++.|...  .                     ..
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~  183 (481)
T TIGR00879       104 LLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFG  183 (481)
T ss_pred             HHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            9999999999999996643   45689999999999999888887777775210  0                     00


Q ss_pred             -------hcCChHHHHHH------HH--HHhCCCchhh------HHHH----HhhhhcCCCCC-----------------
Q 014286          175 -------KKGRTAEAEAE------FE--KLLGGSHVKS------SLAE----LSKLDRGDDGD-----------------  212 (427)
Q Consensus       175 -------~~~~~~~~~~~------~~--~~~~~~~~~~------~~~~----~~~~~~~~~~~-----------------  212 (427)
                             ....+......      ..  ......+.+.      +.++    ..+....++..                 
T Consensus       184 ~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (481)
T TIGR00879       184 SGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIE  263 (481)
T ss_pred             HHhhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHH
Confidence                   00001100000      00  0000000000      0000    00000000000                 


Q ss_pred             ----cchhHhhhcccc--hhHHHHHHHHHHhhhccchhHHHHhHHHHHHhcCCChh---HHHHHHHHHHHHHHHhHhhhh
Q 014286          213 ----IVKFEELLYGRH--FRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLM  283 (427)
Q Consensus       213 ----~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~  283 (427)
                          +..+++.++..+  .+..+....+..+..........++.+.+.++.|.+..   .......++.+++.++.++++
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~  343 (481)
T TIGR00879       264 KRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLV  343 (481)
T ss_pred             HhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                001122222211  23334444444444444455666778888888888774   566677788889999999999


Q ss_pred             cccCccchhhhhhHHHHHHHHHHHHHhhcCCCCC--chhHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHH
Q 014286          284 DKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGS--ASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAV  361 (427)
Q Consensus       284 d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~  361 (427)
                      ||++||+.+..+..+.+++.+++...........  ...+..+....++..+++.+..+....++.|.+|++.|+++.|+
T Consensus       344 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  423 (481)
T TIGR00879       344 DRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISI  423 (481)
T ss_pred             HHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHH
Confidence            9999999998887777777666653222111110  11233334444555566666667777788999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhccCCCCCCHH
Q 014286          362 CMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQ  417 (427)
Q Consensus       362 ~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (427)
                      .+...+++++++|.+.+.+.++.|+...|++.+++++++.++.+++.+|+++++.+
T Consensus       424 ~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~  479 (481)
T TIGR00879       424 AVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLE  479 (481)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCCCCChh
Confidence            99999999999999999999999999999999988888888877777887766543

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=8.5e-31  Score=229.77  Aligned_cols=341  Identities=19%  Similarity=0.189  Sum_probs=252.7

Q ss_pred             HHHHHHHHHHhhhhhccccccccchhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHhhHHH
Q 014286           49 SFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPM  128 (427)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~  128 (427)
                      .+..++.+.++.|..+....+...++|++++|+|+|.++.  |++.|.|.+++.++.++...+.||+.||++++..+.++
T Consensus        11 ~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~a--G~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lF   88 (394)
T COG2814          11 MWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAA--GQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALF   88 (394)
T ss_pred             chHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHH
Confidence            3445778888888888999999999999999999987777  99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHhhhccccccceeecccCCchhhhhcCChHHHHHHHHH------HhCCCc--------
Q 014286          129 IIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTESPHWLYKKGRTAEAEAEFEK------LLGGSH--------  194 (427)
Q Consensus       129 ~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~------~~~~~~--------  194 (427)
                      .++++++++++||+.++++|++.|+..|..++....+..+    +..+++..++...+..      ..+.+.        
T Consensus        89 i~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~----lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~  164 (394)
T COG2814          89 IVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAAR----LVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLF  164 (394)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHh
Confidence            9999999999999999999999999999999998888876    5556666655544322      111110        


Q ss_pred             ----------------hhhHHHHHhhhhcCCC---CCcchhHhhhcccchhHHHHHHHHHHhhhccchhHHHHhHHHHHH
Q 014286          195 ----------------VKSSLAELSKLDRGDD---GDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFK  255 (427)
Q Consensus       195 ----------------~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (427)
                                      ........+ ..+.++   .+..+..+.+|++..+..++...+.+..++   ..+.|..|.+.+
T Consensus       165 GWR~~F~~ia~l~ll~~~~~~~~lP-~~~~~~~~~~~~~~~~~~l~~p~v~~~l~~t~l~~~g~F---~~ftYi~P~L~~  240 (394)
T COG2814         165 GWRATFLAIAVLALLALLLLWKLLP-PSEISGSLPGPLRTLLRLLRRPGVLLGLLATFLFMTGHF---ALYTYIRPFLES  240 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhCC-CccCCCCCCcchhHHHHHhcCchHHHHHHHHHHHHcchh---hhHHhHHHHHHH
Confidence                            000011112 011111   122236677888888777776666665444   344466677777


Q ss_pred             hcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHH
Q 014286          256 SAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVL  332 (427)
Q Consensus       256 ~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (427)
                      ..|++..   +....++++.++|+.++|++.|| +.|+.+.....+.++....+.+....       .+.......++++
T Consensus       241 v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~-------~~~~~~~~~~wg~  312 (394)
T COG2814         241 VAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGAS-------PALALALLFLWGF  312 (394)
T ss_pred             ccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcch-------HHHHHHHHHHHHH
Confidence            8888776   78888999999999999999999 88888888877777777766654432       1333333333332


Q ss_pred             HHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhcc
Q 014286          333 TFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVV  409 (427)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  409 (427)
                      ...... .......++.. ++.+..+.+++....|+|..+|..++|.+.|+.|+....++.+++.+++.++.....+
T Consensus       313 a~~~~~-~~~~~~~a~~~-p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~  387 (394)
T COG2814         313 AFSPAL-QGLQTRLARLA-PDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSAR  387 (394)
T ss_pred             Hhhhhh-hHHHHHhcccC-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            222211 12222344433 4789999999999999999999999999999999999998888888887776654433

>TIGR00898 2A0119 cation transport protein

Probab=99.97  E-value=1.9e-30  Score=247.42  Aligned_cols=332  Identities=21%  Similarity=0.298  Sum_probs=226.2

Q ss_pred             chhhhhhhccCCC-CchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHhhHHHHHHHHHHHhhhhhHHHHHHHHH
Q 014286           72 EPLESISLDLGFN-GNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFV  150 (427)
Q Consensus        72 ~~~~~i~~~~~~~-~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l  150 (427)
                      +..|.+.+|+|++ ++..+.+++.+++.++..++++++|+++||+|||++++++.++.+++++++++++|++.++++|++
T Consensus       110 ~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l  189 (505)
T TIGR00898       110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLL  189 (505)
T ss_pred             cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            5678999999986 224445999999999999999999999999999999999999999999999999999999999999


Q ss_pred             Hhhhccccccceeeccc----------------------------------------------------------CCchh
Q 014286          151 VGTGMGLGPTVAALYVT----------------------------------------------------------ESPHW  172 (427)
Q Consensus       151 ~G~~~g~~~~~~~~~i~----------------------------------------------------------~~~~~  172 (427)
                      .|++.+...+....++.                                                          |+|+|
T Consensus       190 ~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~esp~~  269 (505)
T TIGR00898       190 VGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPDWRWLQLAVSLPTFLFFLLSWFVPESPRW  269 (505)
T ss_pred             HHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCChHH
Confidence            99999987777777666                                                          34444


Q ss_pred             hhhcCChHHHHHHHHHHhCCCchh--hHHHHHh-hhhcCCCCCcchhHhhhcccchhHHHHHHHHHHhhhccchhHHHHh
Q 014286          173 LYKKGRTAEAEAEFEKLLGGSHVK--SSLAELS-KLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYF  249 (427)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (427)
                      +..+++.+++...+......+...  .+..+.. +++..+++++.+++++++++..+...+......+..    ....+.
T Consensus       270 l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~  345 (505)
T TIGR00898       270 LISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTT----AFSYYG  345 (505)
T ss_pred             HHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHH----HHHHHH
Confidence            444444443333332221111000  0000000 000011112346778888877766555443333221    111222


Q ss_pred             HHHHHHhcCCChhHHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHH
Q 014286          250 SSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLM  329 (427)
Q Consensus       250 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (427)
                      .+......+.+........++..+++.++.+++.||+|||+.+..+.++.+++.+++......      ..+.......+
T Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~------~~~~~~~~~~~  419 (505)
T TIGR00898       346 LVLDLGNLGGNIYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVD------LYFLRTALAVL  419 (505)
T ss_pred             HhccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCC------chHHHHHHHHH
Confidence            333334455565566667788888999999999999999999998888877777666554321      11222222222


Q ss_pred             HHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhcc
Q 014286          330 FVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVV  409 (427)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  409 (427)
                      ..++.. ...+..+.+..|.+|++.|+++.|+.+....+|++++|.+.+ + +..++..++.+++++.+++.++. .+.|
T Consensus       420 ~~~~~~-~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~~~~~~~~~~~~~-~~lp  495 (505)
T TIGR00898       420 GKFGIT-SAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPLVLFGGLALLAGILT-LFLP  495 (505)
T ss_pred             HHHHHH-HHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHHHHHHHHHHHHHHH-HcCc
Confidence            222222 233555668999999999999999999999999999999998 3 44566677888887777766555 4678


Q ss_pred             CCCCCCHH
Q 014286          410 ETKGKSLQ  417 (427)
Q Consensus       410 ~~~~~~~~  417 (427)
                      |+++++++
T Consensus       496 et~~~~l~  503 (505)
T TIGR00898       496 ETKGVPLP  503 (505)
T ss_pred             CCCCCCCC
Confidence            88887654

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.97  E-value=2.1e-29  Score=231.71  Aligned_cols=344  Identities=11%  Similarity=0.076  Sum_probs=225.9

Q ss_pred             HHHHHHHHHhhhhhccccccccchhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHhhHHHH
Q 014286           50 FPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMI  129 (427)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~  129 (427)
                      |.....++++.+..... ...++.+|.+++|+|+|.++.  |++.+.+.+++.+++++.|+++||+|||+++..++.+++
T Consensus         9 ~~~~~~~~~~~~~~~~~-~~~~~~lp~i~~~~~~s~~~~--g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~   85 (393)
T PRK09705          9 FMLLVLVLIGLNMRPLL-TSVGPLLPQLRQASGMSFSVA--ALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIA   85 (393)
T ss_pred             HHHHHHHHHHHHcchhh-hccchhHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHH
Confidence            33344555554444333 667899999999999876666  999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhhHHHHHHHHHHhhhccccccceeecccCCchhhhhcCChHHHHHHHH----------HH-----hCC--
Q 014286          130 IGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTESPHWLYKKGRTAEAEAEFE----------KL-----LGG--  192 (427)
Q Consensus       130 ~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~----------~~-----~~~--  192 (427)
                      ++++++++++|++.++++|+++|++.+...+....++.+   |+ + ++...+.....          ..     ...  
T Consensus        86 ~~~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~---~~-~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~  160 (393)
T PRK09705         86 VGALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKR---RF-Q-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSE  160 (393)
T ss_pred             HHHHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHH---Hc-c-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999888877776654   22 1 12221111100          00     000  


Q ss_pred             Cchh--------------hHHHHHhhhhcCCCCCcchhHhhhcccchhHHHHHHHHHHhhhccchhHHHHhHHHHHHhcC
Q 014286          193 SHVK--------------SSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAG  258 (427)
Q Consensus       193 ~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  258 (427)
                      .+..              ......++.++++++++...++.++++..+...+...+...    .+.....+.|.+.++.|
T Consensus       161 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~----~~~~~~~~lp~~l~~~g  236 (393)
T PRK09705        161 TWYQTLAWWALPAVVALFAWWWQSAREVASSHKTTTTPVRVVFTPRAWTLGVYFGLING----GYASLIAWLPAFYIEIG  236 (393)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCcCCcccccCHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHcC
Confidence            0000              00000011111111111223344444444433332222222    33344455565566678


Q ss_pred             CChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHh
Q 014286          259 LSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFA  335 (427)
Q Consensus       259 ~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (427)
                      .+..   ....+.+++.++++++.+++.||++||+.+..+..+..++...+.....      .. ...  ...+.+.+.+
T Consensus       237 ~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~------~~-~~~--~~~l~g~g~g  307 (393)
T PRK09705        237 ASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPL------QL-PVL--WAMVCGLGLG  307 (393)
T ss_pred             CChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccc------hH-HHH--HHHHHHHhcc
Confidence            7765   5667788899999999999999999999888877766666554432211      11 111  1222333333


Q ss_pred             hcccchhhhhccCcC-CccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHHHHHHhccCCCC
Q 014286          336 LGAGPVPSLLLPEIF-PSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLG-PQLLYSIFGTFCLMAVAFVKRNVVETKG  413 (427)
Q Consensus       336 ~~~~~~~~~~~~~~~-p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (427)
                      .. .+.......+.. |+++++++.|+.+...++++.++|.+.|++.|..| +...|.+.++++++..+....+.+|+++
T Consensus       308 ~~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (393)
T PRK09705        308 GA-FPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPARFP  386 (393)
T ss_pred             ch-HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhcccccc
Confidence            22 233333445555 46789999999999999999999999999999987 6777777777777776666777777766


Q ss_pred             CC
Q 014286          414 KS  415 (427)
Q Consensus       414 ~~  415 (427)
                      +.
T Consensus       387 ~~  388 (393)
T PRK09705        387 QL  388 (393)
T ss_pred             ch
Confidence            54

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.97  E-value=1.3e-29  Score=238.48  Aligned_cols=346  Identities=13%  Similarity=0.102  Sum_probs=219.9

Q ss_pred             hhHHHHHHHHHHhhhhhccccccccchhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHhhH
Q 014286           47 KLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCAL  126 (427)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~  126 (427)
                      |..+.++...+++++..++++..+++..|.+.+|+|++.++.  |++.+.+.+++.+++++.|+++||+|||+++..+++
T Consensus        25 ~~~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~--g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~  102 (467)
T PRK09556         25 KPFMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTEL--GMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLI  102 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHH
Confidence            335667778888888889999999999999999999876665  999999999999999999999999999999999888


Q ss_pred             HHHHHHHHHHh-----hhhhHHHHHHHHHHhhhccccccceeecccCC-c-----h---------------------hhh
Q 014286          127 PMIIGASISAT-----TRNLIGMLLGRFVVGTGMGLGPTVAALYVTES-P-----H---------------------WLY  174 (427)
Q Consensus       127 ~~~~~~~~~~~-----~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~-~-----~---------------------~~~  174 (427)
                      ++++++++.++     ++|++.++++|+++|++.+...+....++.+- |     +                     |..
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~  182 (467)
T PRK09556        103 LSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGA  182 (467)
T ss_pred             HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHH
Confidence            88887776665     68999999999999999998887777666531 0     0                     000


Q ss_pred             hc---CChHHHHHH---HH-------HHhCCCchhhH-----HHH-Hhhh---hcC-CCCCcch----h-Hhhhcccchh
Q 014286          175 KK---GRTAEAEAE---FE-------KLLGGSHVKSS-----LAE-LSKL---DRG-DDGDIVK----F-EELLYGRHFR  226 (427)
Q Consensus       175 ~~---~~~~~~~~~---~~-------~~~~~~~~~~~-----~~~-~~~~---~~~-~~~~~~~----~-~~~~~~~~~~  226 (427)
                      ..   +.+......   +.       ...... .+++     .++ ..+.   +++ +++++.+    + +..++++..+
T Consensus       183 ~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  261 (467)
T PRK09556        183 NYFFDGHVIGMFIFPSIIALIIGFIGLRYGSD-SPEELGWGKAEEIFGEPISEEDKETESTDMTKWQIFVEYVLKNPVIW  261 (467)
T ss_pred             HhhccCcchhHHHHHHHHHHHHHHHHHHhCCC-ChhhcCCCChhhcccCccchhhhccccccCcHHHHHHHHHHcChHHH
Confidence            00   001100000   00       000000 0000     000 0000   000 0001111    1 1245565555


Q ss_pred             HHHHHHHHHHhhhccchhHHHHhHHHHH-HhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHH
Q 014286          227 VVFIGSTLFALQQLSGINAIFYFSSSVF-KSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVS  302 (427)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~  302 (427)
                      ...+..++...    .......|.|.++ +..|.+..   .......++.+++.++.|+++||++||+.+.....+..++
T Consensus       262 ~~~~~~~~~~~----~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~  337 (467)
T PRK09556        262 LLCFANIFLYI----VRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALII  337 (467)
T ss_pred             HHHHHHHHHHH----HHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence            44443333222    2233445566444 56788765   4555677788999999999999999988766554443333


Q ss_pred             HHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHH-HHHHHHHHHHHHH
Q 014286          303 MAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWV-INFFVGLLFLRLL  381 (427)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~-g~~~~~~~~g~l~  381 (427)
                      ..++....      ..+.+...+..++.+... .+..........|.+|++.+|++.|+.+..+++ |.+++|.+.|.+.
T Consensus       338 ~~~~~~~~------~~~~~~~~~~~~~~G~~~-~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~  410 (467)
T PRK09556        338 FTLGVYQH------ATSEYMYLASLFALGFLV-FGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIA  410 (467)
T ss_pred             HHHHHHHh------cCcHHHHHHHHHHHHHHH-hhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHh
Confidence            22222211      111122222222222211 121222223667999999999999999999997 7799999999999


Q ss_pred             H------------HhccchhHHHHHHHHHHHHHHHHH
Q 014286          382 E------------QLGPQLLYSIFGTFCLMAVAFVKR  406 (427)
Q Consensus       382 ~------------~~g~~~~~~~~~~~~~~~~~~~~~  406 (427)
                      |            ..||+..|.+.+++.+++.+....
T Consensus       411 ~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~  447 (467)
T PRK09556        411 DPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAI  447 (467)
T ss_pred             cccccccccccccccChHHHHHHHHHHHHHHHHHHHH
Confidence            9            578999998887777776655543

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.97  E-value=9.3e-36  Score=279.98  Aligned_cols=367  Identities=34%  Similarity=0.584  Sum_probs=276.3

Q ss_pred             HHHhhhhhccccccccchhhhhh--hccCCCC-------chhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHhhH
Q 014286           56 ATLSSFLFGYHLGVVNEPLESIS--LDLGFNG-------NTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCAL  126 (427)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~i~--~~~~~~~-------~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~  126 (427)
                      +.++.+.++++...++...+...  .++..+.       ++.+.+++.+...+|..+|+++.|.++||+|||++++++.+
T Consensus         5 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~   84 (451)
T PF00083_consen    5 ASLGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISAL   84 (451)
T ss_pred             eHHHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhccccccccccccccccccccccccc
Confidence            44556788888888777666554  2222222       12345899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhh---hhHHHHHHHHHHhhhccccccceeeccc------------------------------------
Q 014286          127 PMIIGASISATTR---NLIGMLLGRFVVGTGMGLGPTVAALYVT------------------------------------  167 (427)
Q Consensus       127 ~~~~~~~~~~~~~---~~~~l~~~r~l~G~~~g~~~~~~~~~i~------------------------------------  167 (427)
                      +..+++++.++++   |++.+.++|+++|++.|+..+....++.                                    
T Consensus        85 ~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~  164 (451)
T PF00083_consen   85 LMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYY  164 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9999999999999   9999999999999999977777776665                                    


Q ss_pred             ----------------------------CCchhhhhcCChHHHHHHHHHHhCCCchhhHHHHHhhhhcCCCCCcchhHhh
Q 014286          168 ----------------------------ESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEEL  219 (427)
Q Consensus       168 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (427)
                                                  |||+|+..+++.+++.+.+....+....+++..+..+..++.++.+..++++
T Consensus       165 ~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  244 (451)
T PF00083_consen  165 SDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASWRDL  244 (451)
T ss_pred             cccccccccccccccccccccccccccccccceecccccccccccccccccccccccccccccccccccccccceeeeec
Confidence                                        8899998888888888877775544333333322222222222223567777


Q ss_pred             hcccc-hhHHHHHHHHHHhhhccchhHHHHhHHHHHHhcCCChh-HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhH
Q 014286          220 LYGRH-FRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSG-LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFF  297 (427)
Q Consensus       220 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~  297 (427)
                      ++++. ++.......+..+....+.+...+|.+.+.+..+.+.. .......+...++.+++.++.||+|||+.+..+..
T Consensus       245 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~  324 (451)
T PF00083_consen  245 FRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNSFLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLL  324 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            77754 44555555666666666667777888888888888777 55566667777888888899999999999999888


Q ss_pred             HHHHHHHHHHHHhhcCCCCC-chhHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHH
Q 014286          298 SMAVSMAIQVAASSSYIPGS-ASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLL  376 (427)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~  376 (427)
                      +.+++.+.+..........+ ......+....++...+..+..+..+.+..|.+|++.|+++.|+....+++++++++.+
T Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~  404 (451)
T PF00083_consen  325 LMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFL  404 (451)
T ss_pred             cccccccccccccccccccccccccccceeeeeccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            88877776651111111010 11223334444455566667788888899999999999999999999999999999999


Q ss_pred             HHHHHHHhccchhHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHh
Q 014286          377 FLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQEIEIA  422 (427)
Q Consensus       377 ~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (427)
                      ...+.+..+....+.+.++++++..++.+++.||+|+++++|++++
T Consensus       405 ~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~~  450 (451)
T PF00083_consen  405 FPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQEM  450 (451)
T ss_pred             cccccccccccccchhhHHHHHHHHhheeEEEeeCCCCCHHHHHhh
Confidence            9988888775667888888888888888899999999999999875

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.97  E-value=8.1e-29  Score=234.22  Aligned_cols=349  Identities=18%  Similarity=0.207  Sum_probs=216.2

Q ss_pred             HHHHHHHhhhhhccccccccchhhhhhhccCCCCchhH--HHH--HHHHHHHHHHHHHHhHHhhhcccchhHHHHHhhHH
Q 014286           52 HVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLA--EGL--VVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALP  127 (427)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~g~--~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~  127 (427)
                      .+....++.+++++|..+++...|.+.++++.+.++..  .+.  +.++.++++.++++++|+++||+|||+++.+++++
T Consensus        17 ~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l   96 (490)
T PRK10642         17 AITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVI   96 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence            56677889999999999999999999999976544421  122  25778899999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhHH--------HHHHHHHHhhhccccccceeecccCCchhhhhcCChHHHHHH----------HH--
Q 014286          128 MIIGASISATTRNLIG--------MLLGRFVVGTGMGLGPTVAALYVTESPHWLYKKGRTAEAEAE----------FE--  187 (427)
Q Consensus       128 ~~~~~~~~~~~~~~~~--------l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~----------~~--  187 (427)
                      ++++++++++++|+++        ++++|+++|++.|+.++....++.|.    ..++++......          +.  
T Consensus        97 ~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~----~p~~~Rg~~~~~~~~~~~~G~~lg~~  172 (490)
T PRK10642         97 MSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEY----SPDRKRGFMGSWLDFGSIAGFVLGAG  172 (490)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHh----CCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999875        89999999999999999988888872    111111100000          00  


Q ss_pred             ------HHh------CCC--------------------chhhHHH---HHhhhhc--C---CCCCcchhHhhhcccchhH
Q 014286          188 ------KLL------GGS--------------------HVKSSLA---ELSKLDR--G---DDGDIVKFEELLYGRHFRV  227 (427)
Q Consensus       188 ------~~~------~~~--------------------~~~~~~~---~~~~~~~--~---~~~~~~~~~~~~~~~~~~~  227 (427)
                            ...      ...                    ..++...   ...+.++  .   ++.++.++++++++ +++.
T Consensus       173 ~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  251 (490)
T PRK10642        173 VVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGDREGLQDGPKVSFKEIATK-HWRS  251 (490)
T ss_pred             HHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhhccccccccccCCHHHHHHH-hHHH
Confidence                  000      000                    0000000   0000000  0   01122345666653 2233


Q ss_pred             HHHHHHHHHhhhccchhHHHHhHHHHH-HhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHH
Q 014286          228 VFIGSTLFALQQLSGINAIFYFSSSVF-KSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSM  303 (427)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~  303 (427)
                      .........+... .+.....|.|.++ +..|.+..   .......++.+++.++.|+++||+|||+.+..+.++..+..
T Consensus       252 ~~~~~~~~~~~~~-~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~  330 (490)
T PRK10642        252 LLTCIGLVIATNV-TYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLA  330 (490)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            3322222222222 2333444556555 45677654   34455567778889999999999999998877765443332


Q ss_pred             HHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014286          304 AIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQ  383 (427)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~  383 (427)
                      ..+.....     ...........++.+.+.+.... ....+..|.+|++.|+++.|+.+....+++.++|.+.+++.+.
T Consensus       331 ~~~~~~~~-----~~~~~~~~~~~~~~g~~~~~~~g-~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~  404 (490)
T PRK10642        331 IPAFILIN-----SNVIGLIFAGLLMLAVILNCFTG-VMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVES  404 (490)
T ss_pred             HHHHHHHh-----CCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22111111     01112222233333333332222 3334777899999999999987777888889999999999887


Q ss_pred             hc-cchhHHHHHHHHHHHHHHHHHhccCCCC
Q 014286          384 LG-PQLLYSIFGTFCLMAVAFVKRNVVETKG  413 (427)
Q Consensus       384 ~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (427)
                      .+ +..++....+.++++.+.. ++.||+++
T Consensus       405 ~~~~~~~~~~~~~~~~i~~~~~-~~~pes~~  434 (490)
T PRK10642        405 TQNLMMPAYYLMVVAVIGLITG-VTMKETAN  434 (490)
T ss_pred             hCCchHHHHHHHHHHHHHHHHH-HHhccccC
Confidence            65 4555555555555544444 34576644

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.97  E-value=1.3e-28  Score=229.82  Aligned_cols=327  Identities=18%  Similarity=0.204  Sum_probs=218.4

Q ss_pred             hHHHHHHHHHHhhhhhccccccccchhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHhhHH
Q 014286           48 LSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALP  127 (427)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~  127 (427)
                      .++..++.+.++.+.++++.....+.+|.+.+++|+++.+.  +++.+++.+++.++++++|+++||+|||+++..+.++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~--~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~   92 (426)
T PRK12307         15 PQKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEG--AFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVA   92 (426)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence            33445677788888899999999999999999999876665  8999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHhhhccccccceeecccCCchhhhhcCChHHHHHH----------HHHH-----hCC
Q 014286          128 MIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTESPHWLYKKGRTAEAEAE----------FEKL-----LGG  192 (427)
Q Consensus       128 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~----------~~~~-----~~~  192 (427)
                      .++++++++++++++.++++|+++|++.+...+....++.|...    +++...+...          +...     ...
T Consensus        93 ~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~----~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~  168 (426)
T PRK12307         93 YSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWP----KHLKSKASAFLVSGFGIGNIIAAYFMPSFAEA  168 (426)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCC----HhHhhHhhhHHHHHHhHHHHHHHHHHHHHccc
Confidence            99999999999999999999999999999888877777765210    0000000000          0000     000


Q ss_pred             -C--------------------chhhHHHHHhhh-hcCCCC-------CcchhHhhhcccchhHHHHHHHHHHhhhccch
Q 014286          193 -S--------------------HVKSSLAELSKL-DRGDDG-------DIVKFEELLYGRHFRVVFIGSTLFALQQLSGI  243 (427)
Q Consensus       193 -~--------------------~~~~~~~~~~~~-~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (427)
                       .                    ..++..+..+++ ++++++       ....++++++++.++............ +...
T Consensus       169 ~~w~~~f~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  247 (426)
T PRK12307        169 YGWRAAFFVGLLPVLLVIYIRARAPESKEWEEAKLSGKGKHSQSAWSVFSLSMKGLFNRAQFPLTLCVFIVLFSI-FGAN  247 (426)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHCCCChHHHHhhhhccccccccchhhhhHHHHHHHhhchHHHHHHHHHHHHHH-HHHH
Confidence             0                    000000000000 000000       011456677777665544333322221 2122


Q ss_pred             hHHHHhHHHHHHhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchh
Q 014286          244 NAIFYFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASL  320 (427)
Q Consensus       244 ~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (427)
                      .....+.|.+.++.|.+..   .......++.+++.++.|++.||++||+.+..+.++..+....+.....      .. 
T Consensus       248 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~------~~-  320 (426)
T PRK12307        248 WPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQ------DN-  320 (426)
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcc------cc-
Confidence            2234456666666787765   4556667888899999999999999999888777666555443332211      11 


Q ss_pred             HHHHHHHHHHHHHH-hhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Q 014286          321 YLSVGGMLMFVLTF-ALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLL  389 (427)
Q Consensus       321 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~  389 (427)
                      . ......+++.++ ..+..+....++.|.+|++.||++.|+.+...++++.++|.+.|.+.+..|+...
T Consensus       321 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~~  389 (426)
T PRK12307        321 Y-LLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGAA  389 (426)
T ss_pred             H-HHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHHH
Confidence            1 111222222222 1223344445788999999999999999999999999999999999999886543

>PRK03545 putative arabinose transporter; Provisional

Probab=99.97  E-value=8.5e-29  Score=228.05  Aligned_cols=337  Identities=18%  Similarity=0.154  Sum_probs=217.6

Q ss_pred             HHHHHHhhhhhccccccccchhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHhhHHHHHHH
Q 014286           53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGA  132 (427)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~  132 (427)
                      +..+.++.+..........+.+|.+.+|+|.+.++.  |++.+.+.+++.++++++|+++||+|||+++..+.+++++++
T Consensus        11 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~--g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~   88 (390)
T PRK03545         11 VVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQV--GLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASH   88 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence            334344444433444455667899999999876666  999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhHHHHHHHHHHhhhccccccceeecccCCchhhhhcCChHHHHHHHHH------HhCC----------Cch-
Q 014286          133 SISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTESPHWLYKKGRTAEAEAEFEK------LLGG----------SHV-  195 (427)
Q Consensus       133 ~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~------~~~~----------~~~-  195 (427)
                      +++++++|++.++++|+++|++.+...+....++.+.    ..++++..+......      ..+.          .+. 
T Consensus        89 ~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~----~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~  164 (390)
T PRK03545         89 VLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRV----APAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRT  164 (390)
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----CChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHH
Confidence            9999999999999999999999988877777776651    112222222111110      0000          000 


Q ss_pred             -----------h--hHHHHHhhhhcCCCCCcchhHhhhcccchhHHHHHHHHHHhhhccchhHHHHhHHHHHHhcCCChh
Q 014286          196 -----------K--SSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSG  262 (427)
Q Consensus       196 -----------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  262 (427)
                                 .  ......++.+++++....+.++.++++..+......++.....   .....+..+++.+..|.+..
T Consensus       165 ~f~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~g~s~~  241 (390)
T PRK03545        165 TFLAIGGGALITLLLLIKLLPLLPSEHSGSLKSLPLLFRRPALVSLYLLTVVVVTAH---FTAYSYIEPFVQQVAGLSEN  241 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHhCcHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcCCCcc
Confidence                       0  0000011111111112234566777776655444333322222   22222334444455676655


Q ss_pred             ---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhccc
Q 014286          263 ---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAG  339 (427)
Q Consensus       263 ---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (427)
                         ......+++.++++++.+++.||++||... .+..+..++...+....       .+.+.......+.+.+.. ...
T Consensus       242 ~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~-~~~~~~~~~~~~l~~~~-------~~~~~~~~~~~l~g~~~~-~~~  312 (390)
T PRK03545        242 FATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLL-IAIALLLVCLLLLLPAA-------NSEWHLSVLSIFWGIAIM-CIG  312 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH-HHHHHHHHHHHHHHHHh-------chHHHHHHHHHHHHHHHh-cch
Confidence               455667788899999999999999987644 34433333333222211       112233333444444332 333


Q ss_pred             chhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhc
Q 014286          340 PVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNV  408 (427)
Q Consensus       340 ~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  408 (427)
                      +.....+.|..| +.++++.|+.+...++|..+||.+.|.+.|+.|++..+...+++.+++.+......
T Consensus       313 ~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  380 (390)
T PRK03545        313 LAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIF  380 (390)
T ss_pred             HHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence            444456777766 68899999999999999999999999999999999999998888888777765544

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.97  E-value=5.2e-29  Score=231.05  Aligned_cols=344  Identities=18%  Similarity=0.184  Sum_probs=223.6

Q ss_pred             hhHHHHHHHHHHhhhhhccccccccchhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHhhH
Q 014286           47 KLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCAL  126 (427)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~  126 (427)
                      ++.|.++.+.++..+.++++....++..|.+.+++|.+.++.  |++.+.+.++..++++++|+++||+|||+++..+.+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~   88 (406)
T PRK11551         11 SRLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQM--GWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVA   88 (406)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHH
Confidence            355667888888889999999999999999999999866555  999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccceeecccCCchhhhhcCChHHHHHHHHH--------------HhCC
Q 014286          127 PMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTESPHWLYKKGRTAEAEAEFEK--------------LLGG  192 (427)
Q Consensus       127 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--------------~~~~  192 (427)
                      +.+++.+++++++|++.+++.|+++|++.+...+....++.|.    ..+++...+......              ....
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~----~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~  164 (406)
T PRK11551         89 LFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEA----VGPRLRGTAVSLMYCGVPFGGALASVIGVLAAG  164 (406)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHH----cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            9999999999999999999999999999998888777777652    111111111100000              0000


Q ss_pred             C-----------------------chhhHHHHHhhhhcCCCCCcchhHhhhcccchhHHHHHHHHHHhhhccchhHHHHh
Q 014286          193 S-----------------------HVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYF  249 (427)
Q Consensus       193 ~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (427)
                      .                       ..++..+. .+.++.++.++...+..++++..+......... +...........+
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  242 (406)
T PRK11551        165 DAAWRHIFYVGGVGPLLLVPLLMRWLPESRAF-AQAAGAGKQRAPVLRALFGEGRATATLLLWISY-FFTLIVLYFLLNW  242 (406)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHhCCCChhH-HhccCcchhhhhhHHHHhhhhhhhHHHHHHHHH-HHHHHHHHHHHHH
Confidence            0                       00000000 000000111111122333332222221111111 1111123344456


Q ss_pred             HHHHHHhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHH
Q 014286          250 SSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGG  326 (427)
Q Consensus       250 ~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (427)
                      .|.+.++.|.+..   .......++.+++.++.|++.||++||+.+..+.....++...+....        ..+.....
T Consensus       243 ~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~  314 (406)
T PRK11551        243 LPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAP--------SFAGMLLA  314 (406)
T ss_pred             HHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcC--------cHHHHHHH
Confidence            6777777787655   566667788899999999999999999888776655555544433221        11222222


Q ss_pred             HHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHHHHH
Q 014286          327 MLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLG-PQLLYSIFGTFCLMAVAFVK  405 (427)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~  405 (427)
                      ..+.+.+.. +..+...++..|.+|+++|+++.|+.+...++|..++|.+.|.+.++.+ +...+.....+.+++.+..+
T Consensus       315 ~~~~g~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (406)
T PRK11551        315 GFAAGLFVV-GGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAAL  393 (406)
T ss_pred             HHHHHHHHH-hHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHH
Confidence            222333222 3345556688999999999999999999999999999999999998755 34444444444444444444


Q ss_pred             Hh
Q 014286          406 RN  407 (427)
Q Consensus       406 ~~  407 (427)
                      ..
T Consensus       394 ~~  395 (406)
T PRK11551        394 LL  395 (406)
T ss_pred             HH
Confidence            33

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.97  E-value=3.6e-28  Score=226.49  Aligned_cols=345  Identities=17%  Similarity=0.144  Sum_probs=202.9

Q ss_pred             HHHHHHHHHHhhhhhccccccccchhhhhhhccCCC-CchhHHHH---HHHHHHHHHHHHHHhHHhhhcccchhHHHHHh
Q 014286           49 SFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFN-GNTLAEGL---VVSMCLGGAFIGSTLSGWIADGVGRRRAFQLC  124 (427)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~g~---~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~  124 (427)
                      ++..+...+++.+++++|...++...|.+.++++.+ .+..+.+.   +.+...++..++++++|+++||+|||+++..+
T Consensus        20 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~   99 (432)
T PRK10406         20 RIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLIS   99 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence            334566777889999999999999999999998632 12222233   34445555569999999999999999999999


Q ss_pred             hHHHHHHHHHHHhhhhhH--------HHHHHHHHHhhhccccccceeecccCCchhhhhcCChHHHHH----------HH
Q 014286          125 ALPMIIGASISATTRNLI--------GMLLGRFVVGTGMGLGPTVAALYVTESPHWLYKKGRTAEAEA----------EF  186 (427)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~----------~~  186 (427)
                      +++++++++++++++++.        .++++|+++|++.|+.++....++.|.    ..++++.....          ..
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~----~p~~~rg~~~~~~~~~~~~G~~~  175 (432)
T PRK10406        100 VCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEV----AVEGRKGFYASFQYVTLIGGQLL  175 (432)
T ss_pred             HHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHh----CCCCcccHHHHHHHHHHHHHHHH
Confidence            999999999999998874        589999999999999999999998873    11111111100          00


Q ss_pred             HHH-----h---------CCCc----------------hhhHHHHHhhhhcCCCCCcchhHhhhcccchhHHHHHHHHHH
Q 014286          187 EKL-----L---------GGSH----------------VKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFA  236 (427)
Q Consensus       187 ~~~-----~---------~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (427)
                      ...     .         ...+                .....++.++.++++.++..+++++++++..+...+...+  
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--  253 (432)
T PRK10406        176 ALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQQETRALKEAGSLKGLWRNRRAFIMVLGFTA--  253 (432)
T ss_pred             HHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHHHhhhcccccHHHHHhhHHHHHHHHHHHH--
Confidence            000     0         0000                0000000000000011112346677765544433222221  


Q ss_pred             hhhccchhHHHHhHHHHH-HhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhc
Q 014286          237 LQQLSGINAIFYFSSSVF-KSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSS  312 (427)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~-~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~  312 (427)
                      ..... +.....|.|.++ +..|.+..   .......+...++.++.|+++||++||+.+.....+.++....+......
T Consensus       254 ~~~~~-~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~  332 (432)
T PRK10406        254 AGSLC-FYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQN  332 (432)
T ss_pred             HHHHH-HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHc
Confidence            11222 222334455444 55677764   34445556667778888999999999988766655443332222111110


Q ss_pred             CCCCCchhHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHH-HHHHHHHHHHHHHHHhc-cchhH
Q 014286          313 YIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWV-INFFVGLLFLRLLEQLG-PQLLY  390 (427)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~-g~~~~~~~~g~l~~~~g-~~~~~  390 (427)
                          ....+..+....+.....+ ...+....+.+|.+|++.|+++.|+.+..++. .+...|.+.+. .+..| +...+
T Consensus       333 ----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~-l~~~g~~~~~~  406 (432)
T PRK10406        333 ----VSSPYAAFGLVMCALLIVS-FYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALS-LKSIGMETAFF  406 (432)
T ss_pred             ----CCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHH-HHHhCCCcHHH
Confidence                1111111111111111111 11234455889999999999999999988775 34457777774 45566 44455


Q ss_pred             HHHHHHHHHHHHHHHH
Q 014286          391 SIFGTFCLMAVAFVKR  406 (427)
Q Consensus       391 ~~~~~~~~~~~~~~~~  406 (427)
                      +..++..+++.+..++
T Consensus       407 ~~~~~~~~i~~~~~~~  422 (432)
T PRK10406        407 WYVTLMAVVAFLVSLM  422 (432)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            5555555555554443

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.96  E-value=1.5e-28  Score=225.97  Aligned_cols=317  Identities=19%  Similarity=0.182  Sum_probs=211.6

Q ss_pred             cccccchhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHhhHHHHHHHHHHHhhhhhHHHHH
Q 014286           67 LGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLL  146 (427)
Q Consensus        67 ~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~  146 (427)
                      ....++.+|.+.+++|++.++.  |++.+++.+++.++++++|+++||+|||+++..+.++.+++++++++++|++.+++
T Consensus        19 ~~~~~~~~~~~~~~~~~s~~~~--g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (377)
T TIGR00890        19 VYTWTLLAPPLGRYFGVGVTAV--AIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYL   96 (377)
T ss_pred             HhhhhhHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            4456788999999999866655  99999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhccccccceeecccCCchhhhhcCChHHHHHHHHHH---------------hCCCchhh--------------
Q 014286          147 GRFVVGTGMGLGPTVAALYVTESPHWLYKKGRTAEAEAEFEKL---------------LGGSHVKS--------------  197 (427)
Q Consensus       147 ~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~--------------  197 (427)
                      +|+++|++.+...+.....+.+   |. ++ ++..+.......               ......+.              
T Consensus        97 ~~~~~g~~~~~~~~~~~~~~~~---~~-~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~  171 (377)
T TIGR00890        97 TYGLASAGVGIAYGIALNTAVK---WF-PD-KRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIV  171 (377)
T ss_pred             HHHHHhHHHHHHHHhHHHHHHH---Hc-Cc-ccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence            9999999998766555544433   11 11 111111110000               00000000              


Q ss_pred             ----HHHHHhhhhc----CCCCCcchhHhhhcccchhHHHHHHHHHHhhhccchhHHHHhHHHHHHhcCCChh---HHHH
Q 014286          198 ----SLAELSKLDR----GDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSG---LANV  266 (427)
Q Consensus       198 ----~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~  266 (427)
                          ..++.+++++    +.+.+....++.++++..+......+.....    ......+.+.+.++.+.+..   ....
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (377)
T TIGR00890       172 LGAFLIGYPPGQLIKTNIEVSVKDYTVWEMLRTPQFWVLYLSFFLNAVS----GLLLIGLYKPYGQSLGLSDGFLVLAVS  247 (377)
T ss_pred             HHHHheecCchhccccCcccchhhhhHHHHHcCccHHHHHHHHHHHhHH----HHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence                0000000000    0011122345667777666554443333221    12222233344566676654   4566


Q ss_pred             HHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcccchhhhhc
Q 014286          267 FVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLL  346 (427)
Q Consensus       267 ~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (427)
                      ...++.++++++.|++.||++||+.+..+..+..++.+.+.....      ...+.......+.+.+.+. ..+....+.
T Consensus       248 ~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~g~~~g~-~~~~~~~~~  320 (377)
T TIGR00890       248 ISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPM------LNDVLFLATVALVFFTWGG-TISLFPSLV  320 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHccc------chhHHHHHHHHHHHHHhcc-chhccHHHH
Confidence            777888899999999999999999988888777777665544321      1111222222333333332 233444578


Q ss_pred             cCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Q 014286          347 PEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAV  401 (427)
Q Consensus       347 ~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~  401 (427)
                      .|.+|+++|+++.|+.+....+|..++|.+.|.+.+..||+..|.+.+++.+++.
T Consensus       321 ~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~~  375 (377)
T TIGR00890       321 SDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTSL  375 (377)
T ss_pred             HHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence            8999999999999999999999999999999999999999999888777666543

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.96  E-value=2.6e-29  Score=218.35  Aligned_cols=372  Identities=19%  Similarity=0.259  Sum_probs=247.8

Q ss_pred             chhHHHHHHHHHHhhhhhccccccccchhhhhhhcc-CCC-----CchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhH
Q 014286           46 WKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDL-GFN-----GNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRR  119 (427)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~-----~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~  119 (427)
                      .++.+..+.++..+.+.+.||...++.+.|.+...+ |-+     ......+.+..+..+|..+||+++|+++||+|||+
T Consensus        36 qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~  115 (538)
T KOG0252|consen   36 QWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKK  115 (538)
T ss_pred             hHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchh
Confidence            455677888999999999999999999999887655 222     22333488899999999999999999999999999


Q ss_pred             HHHHhhHHHHHHHHHHHhhh-------hhHHHHHHHHHHhhhccccccceeecccCCchh--------------------
Q 014286          120 AFQLCALPMIIGASISATTR-------NLIGMLLGRFVVGTGMGLGPTVAALYVTESPHW--------------------  172 (427)
Q Consensus       120 ~l~~~~~~~~~~~~~~~~~~-------~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~--------------------  172 (427)
                      ++...++++.+++++++++.       =.+++...|++.|+|.|+-+|...++.+|...-                    
T Consensus       116 vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~Gila  195 (538)
T KOG0252|consen  116 VYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILA  195 (538)
T ss_pred             hhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhh
Confidence            99999999999999888753       246789999999999999999999988864210                    


Q ss_pred             ---------------hhhcCChHHHHHHHHHHhCCCchh-----------hHHH---------------HHhhhhcC---
Q 014286          173 ---------------LYKKGRTAEAEAEFEKLLGGSHVK-----------SSLA---------------ELSKLDRG---  208 (427)
Q Consensus       173 ---------------~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~---------------~~~~~~~~---  208 (427)
                                     +..++...+...++....+...++           .+.+               +.++....   
T Consensus       196 G~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~~d~~k~~~~~~~  275 (538)
T KOG0252|consen  196 GGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAAGDMKKVLSVDIE  275 (538)
T ss_pred             ccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhhhccccccccccc
Confidence                           000001111111111111100000           0000               00000000   


Q ss_pred             --------CCCCcch---hHhhhcccchhHHHHHHHHHHhhhccchhHHHHhHHHHHHhcCCChh---H---------HH
Q 014286          209 --------DDGDIVK---FEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSG---L---------AN  265 (427)
Q Consensus       209 --------~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~---------~~  265 (427)
                              ...++..   +...+..++-+.++.....++..-. .++....+...+++..|..+.   .         ..
T Consensus       276 ~~~~~~~~~~~~~~~~~~F~~~f~~~hg~~Llgt~~~WFllDi-afy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~  354 (538)
T KOG0252|consen  276 AESTAESDVPPPSNSFGLFSRLFLRWHGKHLLGTAGTWFLLDI-AFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNL  354 (538)
T ss_pred             hhhccccCCCCcccccchHHHHHHHHHHHHHHHHHHHHHhhhh-hhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHH
Confidence                    0000011   2222222222333333333333222 333344455566666665544   1         12


Q ss_pred             HHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcccchhhhh
Q 014286          266 VFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLL  345 (427)
Q Consensus       266 ~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (427)
                      .+...+.++|..+...++|++|||++.+.+++++.+..+.++...+..    .......+...+..++...+.+.....+
T Consensus       355 iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~----~~~~Gf~v~y~l~~ff~NFGPn~ttfiv  430 (538)
T KOG0252|consen  355 IIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQL----ENTIGFVVLYSLTFFFGNFGPNATTFIV  430 (538)
T ss_pred             HHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccc----cccCceeehHHHHHHHHhcCCCceeEEe
Confidence            222233345667788899999999999999999999888877665421    1122233344444555566777777778


Q ss_pred             ccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHH-----HhccchhHHHHHHHHHHHHHHHHHhccCCCCCCHHHHH
Q 014286          346 LPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLE-----QLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQEIE  420 (427)
Q Consensus       346 ~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (427)
                      .+|.+|++.|++..|+..+.+-.|++++...+.++.+     ..|.+.++++++++++++.+.. ++.||+++++++|++
T Consensus       431 paE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T-~l~pEtk~~~leei~  509 (538)
T KOG0252|consen  431 PAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFT-LLIPETKGKSLEEIS  509 (538)
T ss_pred             ehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHhee-EEeecccccCHHHhc
Confidence            9999999999999999999999999999999999999     7889999999999998887766 456799999999886


Q ss_pred             Hhh
Q 014286          421 IAL  423 (427)
Q Consensus       421 ~~~  423 (427)
                      .+.
T Consensus       510 ~e~  512 (538)
T KOG0252|consen  510 NEE  512 (538)
T ss_pred             Chh
Confidence            543

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.96  E-value=4.4e-28  Score=225.96  Aligned_cols=351  Identities=13%  Similarity=0.082  Sum_probs=216.8

Q ss_pred             HHHHHHHHhhhhhccccccccchhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHhhHHHHH
Q 014286           51 PHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMII  130 (427)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~  130 (427)
                      .+....+++.+...++...+++.+|.+.+++|++.++.  |++.+.+.+++.+++++.|+++||+|||+++.++.++.++
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~  100 (434)
T PRK11663         23 HILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDI--GLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGI  100 (434)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHH
Confidence            34556667777777888888889999999999876555  9999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhHHHHHHHHHHhhhccccccceeecccCCc-h--------------------------hhhhcCChHHHH
Q 014286          131 GASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTESP-H--------------------------WLYKKGRTAEAE  183 (427)
Q Consensus       131 ~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~-~--------------------------~~~~~~~~~~~~  183 (427)
                      +++++++++|++.+++.|++.|++.|...+....++.+.- +                          ++.....+....
T Consensus       101 ~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f  180 (434)
T PRK11663        101 INILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGM  180 (434)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHH
Confidence            9999999999999999999999999988777776665410 0                          000000111100


Q ss_pred             HHHHH------HhCCCchhhHHHHH--h------hh----hcCCCCCcchhHh-----hhcccchhHHHHHHHHHHhhhc
Q 014286          184 AEFEK------LLGGSHVKSSLAEL--S------KL----DRGDDGDIVKFEE-----LLYGRHFRVVFIGSTLFALQQL  240 (427)
Q Consensus       184 ~~~~~------~~~~~~~~~~~~~~--~------~~----~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~  240 (427)
                      .....      .......++..++.  +      ++    .+++++.+.+.++     .++++..+...+...+...   
T Consensus       181 ~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  257 (434)
T PRK11663        181 MIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHDALELAQQQEGAGLSRKEILTKYVLLNPYIWLLSFSYVLVYV---  257 (434)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccccccccchhccccCCChhhhHHHHHhcChHHHHHHHHHHHHHH---
Confidence            00000      00000000000000  0      00    0000001112222     3334444433332222222   


Q ss_pred             cchhHHHHhHHHHH-HhcCCChh---HHHHHHHHHHHHHHHhHhhhhccc--Cccchh-hhhhHHHHHHHHHHHHHhhcC
Q 014286          241 SGINAIFYFSSSVF-KSAGLSSG---LANVFVGIANLLGSVVAMVLMDKL--GRKALL-QWSFFSMAVSMAIQVAASSSY  313 (427)
Q Consensus       241 ~~~~~~~~~~~~~~-~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~--g~~~~~-~~~~~~~~~~~~~~~~~~~~~  313 (427)
                       .+.....+.|.++ +..|.+..   .......++..+++++.|+++||+  ++|+.. ........+....+.....  
T Consensus       258 -~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--  334 (434)
T PRK11663        258 -VRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPF--  334 (434)
T ss_pred             -HHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHccc--
Confidence             2334444555555 55677765   456667788899999999999998  333332 2222222222221111111  


Q ss_pred             CCCCchhHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHH
Q 014286          314 IPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIF  393 (427)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~  393 (427)
                         .. ........+..+. ...+..........|.+|++.|+++.|+.++..++|.+++|.+.|.+.|..||...|.+.
T Consensus       335 ---~~-~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~  409 (434)
T PRK11663        335 ---AS-YVMQAACFFTIGF-FVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVI  409 (434)
T ss_pred             ---cc-HHHHHHHHHHHHH-HHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHH
Confidence               11 1111111111111 111112223346789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhccCCCCC
Q 014286          394 GTFCLMAVAFVKRNVVETKGK  414 (427)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~~~~  414 (427)
                      +++.+++++..+...++++++
T Consensus       410 ~~~~~~~~~~~~~~~~~~~~~  430 (434)
T PRK11663        410 SIAAGISALLLLPFLNAQAPR  430 (434)
T ss_pred             HHHHHHHHHHHHHHHhhhchh
Confidence            888888777665555544443

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.96  E-value=1.2e-28  Score=213.27  Aligned_cols=351  Identities=15%  Similarity=0.132  Sum_probs=238.1

Q ss_pred             chhHHHHHHHHHHhhhhhccccccccchhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHhh
Q 014286           46 WKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCA  125 (427)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~  125 (427)
                      ++.++.+++...+++...++.+..++.+.|.+.+|.++|.+|.  |++.+.+.++|.++..+.|.++||.+.|..+.+++
T Consensus        24 ~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~l--G~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gL  101 (448)
T COG2271          24 KRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQL--GILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGL  101 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHH
Confidence            3445667888999999999999999999999999999876666  99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccceeecccC------Cch----h-------------------hhhc
Q 014286          126 LPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTE------SPH----W-------------------LYKK  176 (427)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~------~~~----~-------------------~~~~  176 (427)
                      ++.++.++++++++|++.+.++-+++|+..|..+|.+...+..      --+    |                   +..+
T Consensus       102 ilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~  181 (448)
T COG2271         102 ILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFH  181 (448)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999988887762      000    1                   1111


Q ss_pred             CChHHHHH----------HHHHHhCC--------CchhhHHHHHhhh-hcCCCCCcch-----hHhhhcccchhHHHHHH
Q 014286          177 GRTAEAEA----------EFEKLLGG--------SHVKSSLAELSKL-DRGDDGDIVK-----FEELLYGRHFRVVFIGS  232 (427)
Q Consensus       177 ~~~~~~~~----------~~~~~~~~--------~~~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~~~~~~~~~~~  232 (427)
                      ..+..+.-          .+......        +.+++...+..+. +++++.+..+     .+-+++||..|.+.++.
T Consensus       182 ~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~~~~d~~e~~~~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a~  261 (448)
T COG2271         182 GGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRGDPLEIYEEEKENEGLTAWQIFVKYVLKNKLIWLLALAN  261 (448)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHHhhcCchhhhhhhccCCCccHHHHHHHHHHcChHHHHHHHHH
Confidence            11111100          00000000        0111111111111 1111111122     34456777777766666


Q ss_pred             HHHHhhhccchhHHHHhHH-HHHHhcCCChh---HHHHHHHHHHHHHHHhHhhhhccc--CccchhhhhhHH-HHHHHHH
Q 014286          233 TLFALQQLSGINAIFYFSS-SVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKL--GRKALLQWSFFS-MAVSMAI  305 (427)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~--g~~~~~~~~~~~-~~~~~~~  305 (427)
                      ......-++    +..|.| ++.+..|++..   .....+-.++++|++++||++||+  |||....+.+.+ ..++.+.
T Consensus       262 vfvYivR~g----i~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~  337 (448)
T COG2271         262 VFVYVVRYG----INDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVL  337 (448)
T ss_pred             HHHHHHHHH----HhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHH
Confidence            555553333    333443 33345666655   677777889999999999999996  566555443333 3333333


Q ss_pred             HHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHH-HHHHHHHHHHHHHHHh
Q 014286          306 QVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWV-INFFVGLLFLRLLEQL  384 (427)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~-g~~~~~~~~g~l~~~~  384 (427)
                      +...+      ..+.++..+++.+.++ +..+..-+......|..|++..|++.|+...+.++ |.+.+....|++.|.+
T Consensus       338 ~w~~~------~~~~~l~~~~l~~iGf-~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~  410 (448)
T COG2271         338 YWLAP------NGSYLLDAILLFIIGF-LIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTW  410 (448)
T ss_pred             HHcCC------CccHHHHHHHHHHHHH-HHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecC
Confidence            33222      1223333333333332 22233344555778999999999999999999999 8999999999999999


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHhcc
Q 014286          385 GPQLLYSIFGTFCLMAVAFVKRNVV  409 (427)
Q Consensus       385 g~~~~~~~~~~~~~~~~~~~~~~~~  409 (427)
                      ||...|.++.+.++++.++......
T Consensus       411 gW~g~Fi~~~~~a~l~~lll~~~~~  435 (448)
T COG2271         411 GWDGGFIVLSIAALLAILLLLPVWN  435 (448)
T ss_pred             CCcchHHHHHHHHHHHHHHHHHHHh
Confidence            9999999988888777766654443

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.96  E-value=1.1e-27  Score=221.60  Aligned_cols=334  Identities=18%  Similarity=0.180  Sum_probs=213.2

Q ss_pred             HHHHHHhhhhhccccccccchhhh-hhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHhhHHHHHH
Q 014286           53 VLVATLSSFLFGYHLGVVNEPLES-ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIG  131 (427)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~  131 (427)
                      +..+++..++..++..+..|.+|. +.+++|.+..+.  |++.+++.+++.+++++.|+++||+|||++++.+.++++++
T Consensus        17 ~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~--g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~   94 (399)
T PRK05122         17 IVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLA--GLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALS   94 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHH--HHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHH
Confidence            344556666666777778888986 678899876655  99999999999999999999999999999999999999888


Q ss_pred             HHHHHhh--------hhhHHHHHHHHHHhhhccccccceeecccCCchhhhhcCChHHHHHHH----------HH-----
Q 014286          132 ASISATT--------RNLIGMLLGRFVVGTGMGLGPTVAALYVTESPHWLYKKGRTAEAEAEF----------EK-----  188 (427)
Q Consensus       132 ~~~~~~~--------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~----------~~-----  188 (427)
                      ++.+.++        .+++.+++.|+++|++.+...+....++.|.    ..+++..++....          ..     
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~----~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~  170 (399)
T PRK05122         95 GLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGR----VGALHTGRVISWNGIATYGALAIGAPLGVL  170 (399)
T ss_pred             HHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhh----cChhhhccchhhhhhhhhHHHHHHHHHHHH
Confidence            7776653        2577899999999999998888776665542    1111111111100          00     


Q ss_pred             HhCCCchhh---------H--HHHHh--hhhcCCCCCcchhHhhhcccchhHHHHHHHHHHhhhccchhHHHHhHHHHHH
Q 014286          189 LLGGSHVKS---------S--LAELS--KLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFK  255 (427)
Q Consensus       189 ~~~~~~~~~---------~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (427)
                      +......+.         .  .....  ++.+.+++++.++++.+++  .+.......+...    .+.....+.+.+..
T Consensus       171 l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~----~~~~~~~~~~~~~~  244 (399)
T PRK05122        171 LYHWGGLAGLGLLIMLLALLGLLLARPRPAVPPVKGERLPFRRVLGR--VWPYGMGLALASI----GFGTIATFITLYYA  244 (399)
T ss_pred             HHHcccHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccchhHHHHHHH--HHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence            000000000         0  00000  0001111112233333332  1111111111111    12223334444444


Q ss_pred             hcCCChh-HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHH
Q 014286          256 SAGLSSG-LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTF  334 (427)
Q Consensus       256 ~~g~~~~-~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (427)
                      +.+.+.. .......++.+++.++.+++.||+++|+.+..+..+.+++...+....+        .+.......+.+.+.
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~G~~~  316 (399)
T PRK05122        245 ARGWDGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPS--------PWMALIGAALTGFGF  316 (399)
T ss_pred             HcccccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcc--------HHHHHHHHHHHHHhH
Confidence            5555332 4556677888899999999999999999888877777776655544321        123333344444444


Q ss_pred             hhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHh
Q 014286          335 ALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRN  407 (427)
Q Consensus       335 ~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  407 (427)
                      +.. .+.......|..|+++||++.|+.+...++|..+++.+.|.+.+..|++..+.+.+++.+++.++....
T Consensus       317 ~~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  388 (399)
T PRK05122        317 SLV-FPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLL  388 (399)
T ss_pred             HHH-HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHh
Confidence            432 334334667888999999999999999999999999999999999999999988888777776655443

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.96  E-value=3.8e-27  Score=216.27  Aligned_cols=330  Identities=16%  Similarity=0.176  Sum_probs=221.7

Q ss_pred             HHHHHHhhhhhccccccccchhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHhhHHHHHHH
Q 014286           53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGA  132 (427)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~  132 (427)
                      +..+.++.++...+.+..++.+|.+.+++|.|.++.  |++.+.+.++..++++++|+++||+|||+++..+.++.+++.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~--G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~   85 (381)
T PRK03633          8 VLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQV--GVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGC   85 (381)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455667777788888999999999999999865555  999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhHHHHHHHHHHhhhccccccceeecccCCchhhhhcCChHHHHHHH----------HHHhCCC---c----h
Q 014286          133 SISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTESPHWLYKKGRTAEAEAEF----------EKLLGGS---H----V  195 (427)
Q Consensus       133 ~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~----------~~~~~~~---~----~  195 (427)
                      +++++++|++.++++|+++|++.+...+.....+.+..    ..++...+....          .......   .    .
T Consensus        86 ~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~  161 (381)
T PRK03633         86 AGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSG----TSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVL  161 (381)
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchH
Confidence            99999999999999999999999887766544443211    001111111110          0000000   0    0


Q ss_pred             hh-----------HHHHHhhhhcCCCCCcchhHhhhcccchhHHHHHHHHHHhhhccchhHHHHhHHHHHHhcCCChh--
Q 014286          196 KS-----------SLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSG--  262 (427)
Q Consensus       196 ~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--  262 (427)
                      ..           ......++++.++++..+.++.++++.++......+....    .......+.|.+.++.|.+..  
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~lp~~~~~~g~s~~~~  237 (381)
T PRK03633        162 PWVTGLVLAAILPLLFTRILNQQAENHDSTSIWPMLKLRQARLGVNGCIISGI----VLGSLYGLMPLYLNHQGMSDASI  237 (381)
T ss_pred             HHHHHHHHHHHHHHHHhcccCCCCCCCCCCCHHHHHHhcchHHHHHHHHHHHH----HHHHHHHHHHHHHHHcCCCHHHH
Confidence            00           0000001111111122345667777766643332222221    122333456666666777755  


Q ss_pred             -HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcccch
Q 014286          263 -LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPV  341 (427)
Q Consensus       263 -~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (427)
                       .......++.+++++..|++.||+++|+.+..+.....++...+.  ..         ........+.+.+. ....|.
T Consensus       238 g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~~---------~~~~~~~~l~g~~~-~~~~p~  305 (381)
T PRK03633        238 GFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--SQ---------AAMAPALFILGAAG-FTLYPV  305 (381)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--hh---------HHHHHHHHHHHHHH-HhHHHH
Confidence             455566678889999999999999999988877776666554332  10         01112222233222 233466


Q ss_pred             hhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHH
Q 014286          342 PSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFV  404 (427)
Q Consensus       342 ~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~  404 (427)
                      ..+.+.|..|+++++.+.+..+...++|..++|.+.|.+.|+.|+...|.+.+.+.++..+..
T Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~  368 (381)
T PRK03633        306 AMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLML  368 (381)
T ss_pred             HHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHH
Confidence            666788888888888888888888999999999999999999999989988877776655444

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.96  E-value=2.3e-28  Score=206.22  Aligned_cols=357  Identities=20%  Similarity=0.273  Sum_probs=255.3

Q ss_pred             chhHHHHHHHHHHhhhhhccccccccchhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHhh
Q 014286           46 WKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCA  125 (427)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~  125 (427)
                      .+.++...+....+...+.+..-...-+.|...+.++.+  ..+..++......|..+++..||.++|++|||+.+.+..
T Consensus        73 grfq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s--~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~  150 (528)
T KOG0253|consen   73 GRFQWYLFFVAGMGWMADAMEMMLLSLILPALDEVWGPS--EGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTF  150 (528)
T ss_pred             ccchhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchh--hhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhH
Confidence            344555666777777777666666666778888888864  444489999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccceeeccc--------------------------------------
Q 014286          126 LPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVT--------------------------------------  167 (427)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~--------------------------------------  167 (427)
                      ....+...+.+.++|+..+.+.|.+.|+|.|+.......+.-                                      
T Consensus       151 l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg~pv~~~~yle~lp~~~r~~~~V~~~~waig~v~ea~law~vm~~~gwr  230 (528)
T KOG0253|consen  151 LVTGVFGVISGASPNFASLCVFRALWGFGVGGLPVDSAIYLEFLPSSHRWLLTVMSFFWAIGQVFEALLAWGVMSNFGWR  230 (528)
T ss_pred             HHHHHHHHhhcCCCCeehhhHHHHHHhccCCCccHhHHHHHHhccCcCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence            999999999999999999999999999999973322222111                                      


Q ss_pred             ---------------------CCchhhhhcCChHHHHHHHHHHhCCCchhhHH-------HHHhh---------hhcCCC
Q 014286          168 ---------------------ESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSL-------AELSK---------LDRGDD  210 (427)
Q Consensus       168 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~---------~~~~~~  210 (427)
                                           ||||++..+++..++...+..+...+..+.+.       ++..+         ..+..+
T Consensus       231 ~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~k  310 (528)
T KOG0253|consen  231 YLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSAAK  310 (528)
T ss_pred             HHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhcccc
Confidence                                 89999999999999988888776544322110       00000         001112


Q ss_pred             CCcchhHhhhcccchhHHHHHHHHHHhhhccchhHHHHhHHHHHHhcC--------------------CChh---HHHHH
Q 014286          211 GDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAG--------------------LSSG---LANVF  267 (427)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--------------------~~~~---~~~~~  267 (427)
                      +...+..+++..+.++..++....++...+..+..+.. ...+++...                    .+..   .-..+
T Consensus       311 e~rg~~~nLlsp~lrkttlllw~iwfgnafsyyg~VLl-ttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdlli  389 (528)
T KOG0253|consen  311 EVRGGTTNLLSPKLRKTTLLLWRIWFGNAFSYYGSVLL-TTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLI  389 (528)
T ss_pred             ccccchHhhcChHHHHHHHHHHHHHHhhHHHHHHHHHH-HHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHH
Confidence            33455677777666666666666666555544443332 222222110                    0111   34566


Q ss_pred             HHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcccchhhhhcc
Q 014286          268 VGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLP  347 (427)
Q Consensus       268 ~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (427)
                      ..+..++|.++.+++.||+|||+.+....++.+++.+++.......        ...+..+..-.+.. +...+.+.|..
T Consensus       390 tslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn--------~~tvllf~arafis-g~fqvaYvYtP  460 (528)
T KOG0253|consen  390 TSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRN--------AYTVLLFTARAFIS-GAFQVAYVYTP  460 (528)
T ss_pred             HHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcc--------hhHHHHHHHHHHHh-chheEEEEecC
Confidence            7788999999999999999999999999999888877766544321        22222333333333 33445566999


Q ss_pred             CcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhccCCCCCCH
Q 014286          348 EIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSL  416 (427)
Q Consensus       348 ~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (427)
                      |++|+..|+++.|....+..+|+++.|.++  +........+..+.+++++++.+...++.-|+|+|++
T Consensus       461 EVyPTavRatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcffPiEtkGR~l  527 (528)
T KOG0253|consen  461 EVYPTAVRATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFFPIETKGRSL  527 (528)
T ss_pred             cccchhhhhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheeeeeccCCCCC
Confidence            999999999999999999999999999998  4444556667778899999998888888889998864

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.96  E-value=9.1e-27  Score=212.01  Aligned_cols=346  Identities=14%  Similarity=0.078  Sum_probs=230.4

Q ss_pred             HHHHHHHHHhhhhhccccccccchhhhhhh-ccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHhhHHH
Q 014286           50 FPHVLVATLSSFLFGYHLGVVNEPLESISL-DLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPM  128 (427)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~  128 (427)
                      ++.+....++.+.......+.+++.+.+.+ |+|++.++.  +++.+++.++++++.++.|++.||+|.|+++.++.+++
T Consensus        33 ~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~--g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~  110 (462)
T PRK15034         33 RRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQL--FLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAIL  110 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence            345566666666666777788888888876 899876665  99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhh-----hhhHHHHHHHHHHhhhccccccceeecccCCchhhhhcCChHHHHHHHHH---------------
Q 014286          129 IIGASISATT-----RNLIGMLLGRFVVGTGMGLGPTVAALYVTESPHWLYKKGRTAEAEAEFEK---------------  188 (427)
Q Consensus       129 ~~~~~~~~~~-----~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---------------  188 (427)
                      ++.+++.+++     +|++.+++.|++.|++ |..++.....+.+   |+ .+++...+......               
T Consensus       111 ~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~---wf-p~~~rG~A~Gi~~g~G~~G~~l~~~l~p~  185 (462)
T PRK15034        111 IIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISF---FF-PKAKQGSALGINGGLGNLGVSVMQLVAPL  185 (462)
T ss_pred             HHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHH---HC-CHhHhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            9999999987     8999999999999998 6666666666654   22 22222222221100               


Q ss_pred             -----H---hCCCc----------hh------hH-------HHH-HhhhhcCCCCCcchhHhhhcccchhHHHHHHHHHH
Q 014286          189 -----L---LGGSH----------VK------SS-------LAE-LSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFA  236 (427)
Q Consensus       189 -----~---~~~~~----------~~------~~-------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (427)
                           +   .+...          .+      ..       ..- ..++.++++.+.....+.+|+++.|...+.+++.+
T Consensus       186 ~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~~~~~~~~~~~vlk~~~~Wllslly~~tF  265 (462)
T PRK15034        186 VIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIASSRASIADQLPVLQRLHLWLLSLLYLATF  265 (462)
T ss_pred             HHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCHHHHHHHhCCCchhHHHHHHHHHH
Confidence                 0   00000          00      00       000 00111112223445667888888877666555544


Q ss_pred             hhhccchhHHHHhHHHHHHhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcC
Q 014286          237 LQQLSGINAIFYFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSY  313 (427)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (427)
                      .    .+..+.++.|++.++ .++..   ....+..+...+.++++|+++||+|+++++..+.+...++...+.....  
T Consensus       266 G----~fvg~s~~lp~~~~~-~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp--  338 (462)
T PRK15034        266 G----SFIGFSAGFAMLAKT-QFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLP--  338 (462)
T ss_pred             H----HHHHHHHHHHHHHHH-HcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhc--
Confidence            3    344444455555443 22222   2234445677888899999999999999999888777666544333221  


Q ss_pred             CCCCchhHHHHHHHHHHHHHHhhcccchhhhhccCcCCc---------------------cchhhHHHHHHHHHHHHHHH
Q 014286          314 IPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPS---------------------RIRAKAMAVCMSVHWVINFF  372 (427)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~---------------------~~~g~~~g~~~~~~~~g~~~  372 (427)
                      .....+.+.....++......+.+..++.. ++.+.+|+                     ++.|.+.|+....+.+|+++
T Consensus       339 ~~~~~~~~~~~~~~~~l~~~~G~gngsvfk-~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~  417 (462)
T PRK15034        339 GTGSGNFIAFYAVFMGLFLTAGLGSGSTFQ-MIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFF  417 (462)
T ss_pred             cccccHHHHHHHHHHHHHHHhcccchHHHH-hhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccch
Confidence            111223344444444444555555556555 66677764                     15789999999999999999


Q ss_pred             HHHHHHHHHHHhc-cchhHHHHHHHHHHHHHHHHHhccC
Q 014286          373 VGLLFLRLLEQLG-PQLLYSIFGTFCLMAVAFVKRNVVE  410 (427)
Q Consensus       373 ~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~  410 (427)
                      .|.+.|...+..| +...|+.+.+..+++.++.+....+
T Consensus       418 ~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y~r  456 (462)
T PRK15034        418 IPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVYGR  456 (462)
T ss_pred             hhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9999999988877 6777888888888887777665543

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.96  E-value=2.7e-27  Score=219.80  Aligned_cols=330  Identities=19%  Similarity=0.170  Sum_probs=209.7

Q ss_pred             hHHHHHHHHHHhhhhhccccccccchhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHhhHH
Q 014286           48 LSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALP  127 (427)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~  127 (427)
                      +++.....+.++.+.++++....+++.|.+.+++|++.++.  |++.+++.++..+++++.|.++||+|||++++.+.++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~--g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~   86 (405)
T TIGR00891         9 AQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDA--ASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVL   86 (405)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhH--HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            44556778889999999999999999999999999877666  9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHhhhccccccceeecccCCchhhhhcCChHHHHHHHHH------------------H
Q 014286          128 MIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTESPHWLYKKGRTAEAEAEFEK------------------L  189 (427)
Q Consensus       128 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~------------------~  189 (427)
                      .++++++++++++++.+++.|+++|++.+...+....++.|..    .+++...+......                  .
T Consensus        87 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~  162 (405)
T TIGR00891        87 FSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESW----PKHLRNKASGLLISGYAVGAVVAAQVYSLVVPV  162 (405)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhC----ChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999988888777776521    11111100000000                  0


Q ss_pred             hCC--------------------CchhhHHHHHhhhhcCCCCCcchhHhhhc-------------------ccchhH-HH
Q 014286          190 LGG--------------------SHVKSSLAELSKLDRGDDGDIVKFEELLY-------------------GRHFRV-VF  229 (427)
Q Consensus       190 ~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~-~~  229 (427)
                      .+.                    ...++..+..++ +++++......++..+                   .+..+. ..
T Consensus       163 ~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (405)
T TIGR00891       163 WGDGWRALFFISILPIIFALWLRKNIPEAEDWKEK-HAGKALVRTMVDILYGGEHRIANIVMTLAAAMVQSAGKRWPTFV  241 (405)
T ss_pred             cCccHHHHHHHHHHHHHHHHHHHHhCCCChhHHHH-hhhhhhhhhHHHHHhccchhhhhhhhhhhHHhhhhhhhhhHHHH
Confidence            000                    000000000000 0000000000000000                   011111 11


Q ss_pred             HHHHHHHhhhccchhHHHHhHHHHHHhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHH
Q 014286          230 IGSTLFALQQLSGINAIFYFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQ  306 (427)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~  306 (427)
                      .......+..........++.++..++.|.+..   .......++.+++.++.+++.||++||+.+..+..+..+.....
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~  321 (405)
T TIGR00891       242 YLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPV  321 (405)
T ss_pred             HHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHH
Confidence            111111111111112222233344455677765   45566778889999999999999999998877766543332222


Q ss_pred             HHHhhcCCCCCchhHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Q 014286          307 VAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLG-  385 (427)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-  385 (427)
                      ....       ...+...+...+.+. ...+..+....++.|.+|+++|+++.|+.+.+.++|..++|.+.|.+.|..| 
T Consensus       322 ~~~~-------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~  393 (405)
T TIGR00891       322 FAIG-------ANVAVLGLGLFFQQM-LVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDE  393 (405)
T ss_pred             HHhC-------CchHHHHHHHHHHHH-HHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            1111       111222222222222 2223344555688999999999999999999999999999999999999999 


Q ss_pred             cchhHHH
Q 014286          386 PQLLYSI  392 (427)
Q Consensus       386 ~~~~~~~  392 (427)
                      |...+..
T Consensus       394 ~~~~~~~  400 (405)
T TIGR00891       394 YGTALAS  400 (405)
T ss_pred             cchhHHh
Confidence            7655543

>PRK15075 citrate-proton symporter; Provisional

Probab=99.96  E-value=6.1e-27  Score=218.42  Aligned_cols=324  Identities=19%  Similarity=0.217  Sum_probs=196.2

Q ss_pred             HHHHHHHhhhhhccccccccchhhhhhhccCCCCchhHHHHHHHHH-----HHHHHHHHHhHHhhhcccchhHHHHHhhH
Q 014286           52 HVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMC-----LGGAFIGSTLSGWIADGVGRRRAFQLCAL  126 (427)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~-----~l~~~~~~~~~G~l~dr~Grr~~l~~~~~  126 (427)
                      .....+++.+.+++|+..+++..|.+.+|++.++.+.. ++..+..     .++..+++++.|+++||+|||++++.+.+
T Consensus        16 ~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~   94 (434)
T PRK15075         16 AILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFA-SLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLS   94 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchH-HHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHH
Confidence            47788889999999999999999999999998766542 2333322     23335789999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhH--------HHHHHHHHHhhhccccccceeecccCCchhhhhcCChHHHHHHH------------
Q 014286          127 PMIIGASISATTRNLI--------GMLLGRFVVGTGMGLGPTVAALYVTESPHWLYKKGRTAEAEAEF------------  186 (427)
Q Consensus       127 ~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~------------  186 (427)
                      ++.+++++++++++++        .++++|+++|++.+...+....++.|.    .+++++.......            
T Consensus        95 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~----~p~~~rg~~~~~~~~~~~~g~~~g~  170 (434)
T PRK15075         95 IMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEI----ATPGRKGFYTSWQSASQQVAVVFAA  170 (434)
T ss_pred             HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhh----CCcccchHHHHHHHHHHHHHHHHHH
Confidence            9999999999999987        468999999999999888777777762    2222222111100            


Q ss_pred             --HHHh----------CCCch----------h--hHHHH-Hhhhhc-CCCCCcchhHhhhcc--cchhHHHHHHHHHHhh
Q 014286          187 --EKLL----------GGSHV----------K--SSLAE-LSKLDR-GDDGDIVKFEELLYG--RHFRVVFIGSTLFALQ  238 (427)
Q Consensus       187 --~~~~----------~~~~~----------~--~~~~~-~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  238 (427)
                        ....          ...+.          .  ....+ .++.++ .+++++.+.++.+++  ++++........... 
T Consensus       171 ~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  249 (434)
T PRK15075        171 LLGYLLNQWLSPAQMAEWGWRIPFLIGCLIVPFIFLIRRSLEETEEFLARKHRPSMREIFRSLAANWRIVLAGMLMVAM-  249 (434)
T ss_pred             HHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhhccccccHHHHHHHhHHHHHHHHHHHHH-
Confidence              0000          00000          0  00000 000000 000001111222211  111222222222222 


Q ss_pred             hccchhHHHHhHHHHHHh-cCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHH-HHHHHhhcC
Q 014286          239 QLSGINAIFYFSSSVFKS-AGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMA-IQVAASSSY  313 (427)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~-~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~  313 (427)
                      ....+.....|.|.++++ .|.+..   ....+..++.+++.++.|+++||++||+.+..+..+..+... .+.....  
T Consensus       250 ~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~--  327 (434)
T PRK15075        250 TTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVA--  327 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHc--
Confidence            222344555666766654 677755   455567788889999999999999999987766544332221 1111111  


Q ss_pred             CCCCchhHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHH-HHHHHHHHHHHHHHHhccc
Q 014286          314 IPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWV-INFFVGLLFLRLLEQLGPQ  387 (427)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~-g~~~~~~~~g~l~~~~g~~  387 (427)
                        .. ..........+.+.+++. ..+....+..|.+|++.|+++.|+.+.+... ++.++|.+.|.+.|..|+.
T Consensus       328 --~~-~~~~~~~~~~~~~~~~g~-~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~  398 (434)
T PRK15075        328 --AP-SFARMLAVELWLSFLYGS-YNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDK  398 (434)
T ss_pred             --CC-chHHHHHHHHHHHHHHHH-HHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence              11 111111212222223322 2333445788999999999999997666654 5888999999999998863

>PRK12382 putative transporter; Provisional

Probab=99.96  E-value=8.6e-27  Score=215.06  Aligned_cols=330  Identities=16%  Similarity=0.144  Sum_probs=208.7

Q ss_pred             HHHhhhhhccccccccchhhh-hhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHhhHHHHHHHHH
Q 014286           56 ATLSSFLFGYHLGVVNEPLES-ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASI  134 (427)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~  134 (427)
                      +.++.+......+...|.+|. +.+|+|.|.++.  |++.+++.+++.++++++|+++||+||||+++.+.+...++.+.
T Consensus        20 ~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~--g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~   97 (392)
T PRK12382         20 IAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMV--GIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLA   97 (392)
T ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHH--HHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHH
Confidence            333444444556777788885 578999876665  99999999999999999999999999999999998887776654


Q ss_pred             HHh--------hhhhHHHHHHHHHHhhhccccccceeecccCCchhhhhcCChHHHHHHHH----------H-----HhC
Q 014286          135 SAT--------TRNLIGMLLGRFVVGTGMGLGPTVAALYVTESPHWLYKKGRTAEAEAEFE----------K-----LLG  191 (427)
Q Consensus       135 ~~~--------~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~----------~-----~~~  191 (427)
                      +..        .+|++.++++|+++|++.+...+...+++.|.    ..++++..+.....          .     +..
T Consensus        98 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~----~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~  173 (392)
T PRK12382         98 YLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGL----VGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHS  173 (392)
T ss_pred             HHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----CCccccchhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            322        35889999999999999998777666655441    11111111111100          0     000


Q ss_pred             -CCch------------h-hHHHHHhhhhcCCCCCcchhHhhhcccchhHHHHHHHHHHhhhccchhHHHHhHHHHHHhc
Q 014286          192 -GSHV------------K-SSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSA  257 (427)
Q Consensus       192 -~~~~------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (427)
                       ....            . ....+.++. +.+++++.+.++..+.  .+...+...+...    .......+.+.+.++.
T Consensus       174 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~  246 (392)
T PRK12382        174 HFGFAALALTTMVLPLLAWAFNGTVRKV-PAHAGERPSLWSVVGL--IWKPGLGLALQGV----GFAVIGTFVSLYFASK  246 (392)
T ss_pred             ccChHHHHHHHHHHHHHHHHHHHhccCC-CCCcccCchHHHHHHH--HHHhHHHHHHHHH----HHhHHHHHHHHHHHhc
Confidence             0000            0 000011111 1111112223333321  1111111111111    1223334444455555


Q ss_pred             CCChh-HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhh
Q 014286          258 GLSSG-LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFAL  336 (427)
Q Consensus       258 g~~~~-~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (427)
                      +.+.. ......+++.+++++..|++.||+++|+.+..+..+.+++..++....+        .+.......+.+.+.+.
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~g~~~~~  318 (392)
T PRK12382        247 GWAMAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPT--------AWVALAGAALTGAGCSL  318 (392)
T ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHccc--------HHHHHHHHHHHHHHHHh
Confidence            65544 4455566777889999999999999999988888777777665543221        12333334444444433


Q ss_pred             cccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHh
Q 014286          337 GAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRN  407 (427)
Q Consensus       337 ~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  407 (427)
                       ..+.......|.+|+++||++.|+.+...++|..++|.+.|.+.|+.||+..|.+.+++.+++.++....
T Consensus       319 -~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  388 (392)
T PRK12382        319 -IFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTILS  388 (392)
T ss_pred             -HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhh
Confidence             2344444677888999999999999999999999999999999999999999999888887777666544

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.96  E-value=7e-27  Score=216.10  Aligned_cols=334  Identities=13%  Similarity=0.071  Sum_probs=211.2

Q ss_pred             hHHHHHHHHHHhhhhhccccccccchhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHhhHH
Q 014286           48 LSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALP  127 (427)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~  127 (427)
                      .++.++..++++++.+++|+..++...|.+.+|+|++.++.  |++.+++.+++.+++++.|+++||+|||+++..++++
T Consensus         5 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~--g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~   82 (412)
T TIGR02332         5 LFRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMF--GLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVL   82 (412)
T ss_pred             ehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHH--HHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHH
Confidence            34567788888889999999999999999999999876666  9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHhhhccccccceeecccCC-ch--------------------------hhhhc----
Q 014286          128 MIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTES-PH--------------------------WLYKK----  176 (427)
Q Consensus       128 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~-~~--------------------------~~~~~----  176 (427)
                      ++++++++++++|++.+++.|+++|++.+...+....++.|- |+                          ++...    
T Consensus        83 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~  162 (412)
T TIGR02332        83 WGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLM  162 (412)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            999999999999999999999999999998887776666641 10                          00000    


Q ss_pred             --CChHHHHHHHH---------HHhCCCchh-------h-HHHHHhhh---hc-----CC-C--CC----cchhHhhhcc
Q 014286          177 --GRTAEAEAEFE---------KLLGGSHVK-------S-SLAELSKL---DR-----GD-D--GD----IVKFEELLYG  222 (427)
Q Consensus       177 --~~~~~~~~~~~---------~~~~~~~~~-------~-~~~~~~~~---~~-----~~-~--~~----~~~~~~~~~~  222 (427)
                        ..++.......         ......+.+       + +.+...+.   +.     .+ .  +.    +..+++++ +
T Consensus       163 ~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  241 (412)
T TIGR02332       163 ALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEEDKKALKEMIDNDQLTLEQPEGAFAHAAMPQRSMLREIF-T  241 (412)
T ss_pred             CccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHhc-C
Confidence              01111110000         000000000       0 00000000   00     00 0  00    01122222 2


Q ss_pred             cchhHHHHHHHHHHhhhccchhHHHHhHHHHHHhc--CCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchh-hhhh
Q 014286          223 RHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSA--GLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALL-QWSF  296 (427)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~-~~~~  296 (427)
                      +..+...+   .. +.....+..+..|.|.++++.  +.+..   .......++.+++.++.|+++||+++|+.. ....
T Consensus       242 ~~~~~~~~---~~-~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~  317 (412)
T TIGR02332       242 PAIMLYTL---AY-FCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPY  317 (412)
T ss_pred             hHHHHHHH---HH-HHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHH
Confidence            32222222   22 222223445556777777664  44433   466777888999999999999999977643 3333


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHH
Q 014286          297 FSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLL  376 (427)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~  376 (427)
                      ....++..+ ....      +.. ........+...+.. ...+.......|.+|+++|+++.|+.+...++|++++|.+
T Consensus       318 ~~~~~~~~~-~~~~------~~~-~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~  388 (412)
T TIGR02332       318 LFAAAGWLL-ASAT------DHN-LIQLLGIIMASMGSF-SAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFL  388 (412)
T ss_pred             HHHHHHHHH-HHhc------CCH-HHHHHHHHHHHHHhh-hhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhh
Confidence            333333211 1111      111 111111222221111 1123334455678899999999999999999999999999


Q ss_pred             HHHHHHHhc-cchhHHHHHHHH
Q 014286          377 FLRLLEQLG-PQLLYSIFGTFC  397 (427)
Q Consensus       377 ~g~l~~~~g-~~~~~~~~~~~~  397 (427)
                      .|.+.|..| |...+.+.+++.
T Consensus       389 ~g~i~~~~g~~~~~~~~~~~~~  410 (412)
T TIGR02332       389 IGILKDATGSFNSGLWFVAALL  410 (412)
T ss_pred             cccccccCCCCchhHHHHHHHH
Confidence            999999886 887777665543

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.96  E-value=2.3e-26  Score=211.08  Aligned_cols=340  Identities=14%  Similarity=0.123  Sum_probs=213.7

Q ss_pred             HHHHHHhhhhhccccccccchhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHhhHHHHHHH
Q 014286           53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGA  132 (427)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~  132 (427)
                      +....+..+..+.......+.+|.+++|+|++.++.  |++.+.+.+++.++++++|+++||+|||+++..+.++.+++.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~--g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~   82 (382)
T PRK10091          5 ILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAA--GHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGN   82 (382)
T ss_pred             HHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHH--hHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHH
Confidence            445556667777777788889999999999876666  999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhHHHHHHHHHHhhhccccccceeecccCCchhhhhcCChHHHHHH------HHHHhCCC---------chhh
Q 014286          133 SISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTESPHWLYKKGRTAEAEAE------FEKLLGGS---------HVKS  197 (427)
Q Consensus       133 ~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~------~~~~~~~~---------~~~~  197 (427)
                      +++++++|++.+++.|+++|++.+...+....++.+.    ..+++...+...      +....+..         ..+.
T Consensus        83 ~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~  158 (382)
T PRK10091         83 AMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKI----IKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRY  158 (382)
T ss_pred             HHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh----CChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHH
Confidence            9999999999999999999999988776666555541    111111111111      00000000         0000


Q ss_pred             ---------------HHHHHhhhhcCCCCCcchhHhhhcccchhHHHHHHHHHHhhhccchhHHHHhHHHHHHhcCCChh
Q 014286          198 ---------------SLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSG  262 (427)
Q Consensus       198 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  262 (427)
                                     .....++.+++++.+.....+.++++..+.......+.   .........+..+++.+..|.++.
T Consensus       159 ~f~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~s~~  235 (382)
T PRK10091        159 TFLLIAVFNIAVLASIYFWVPDIRDEAKGGLREQFHFLRSPAPWLIFAATMFG---NAGVFAWFSYIKPYMMFISGFSET  235 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCcccccCHHHHHHHhcChHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhcCCCHH
Confidence                           00001111111111111122344444444332222211   111122223334455555787766


Q ss_pred             ---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhccc
Q 014286          263 ---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAG  339 (427)
Q Consensus       263 ---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (427)
                         ......+++.++++++.+++.||+++|+.+..+..+.+++.+++......       .+.......+.+.+......
T Consensus       236 ~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~  308 (382)
T PRK10091        236 SMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGM-------KTASLIFAFICCAGLFALSA  308 (382)
T ss_pred             HHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhh-------HHHHHHHHHHHHHHHHhhhH
Confidence               55667778889999999999999999998888877777666554332211       12222333333333322223


Q ss_pred             chhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH-hccchhHHHHHHHHHHHHHHHHHhccC
Q 014286          340 PVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQ-LGPQLLYSIFGTFCLMAVAFVKRNVVE  410 (427)
Q Consensus       340 ~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~  410 (427)
                      +.......+..|.+.++.+  ..+...++|..+||.+.|.+.|. .+|+..+.+.++++.+.......+.++
T Consensus       309 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (382)
T PRK10091        309 PLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLYGRY  378 (382)
T ss_pred             HHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHHHHhhh
Confidence            3333344555555555544  34677889999999999999996 578888888877776666555444443

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.96  E-value=9.9e-27  Score=218.02  Aligned_cols=341  Identities=11%  Similarity=0.074  Sum_probs=204.0

Q ss_pred             HHHHHHHHHHhhhhhccccccccchhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHhhHHH
Q 014286           49 SFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPM  128 (427)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~  128 (427)
                      .|.++...++.....+.++..+++.+|.+.++ |++.++.  |++.+++.+++.++++++|+++||+|||++++.+.+++
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~--g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~  103 (452)
T PRK11273         27 RWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDL--GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILA  103 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHH--HHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHH
Confidence            34445555566666666666667788988888 8876655  99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhh----hhHHHHHHHHHHhhhccccccceeecccCCchhhhhcCChHHHHHHH-----------HH-----
Q 014286          129 IIGASISATTR----NLIGMLLGRFVVGTGMGLGPTVAALYVTESPHWLYKKGRTAEAEAEF-----------EK-----  188 (427)
Q Consensus       129 ~~~~~~~~~~~----~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-----------~~-----  188 (427)
                      +++.+++++++    +++.+++.|++.|++.+...+.....+.+   |+ .+++...+....           ..     
T Consensus       104 ~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~---~~-~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~  179 (452)
T PRK11273        104 AAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVH---WW-SQKERGGIVSVWNCAHNVGGGLPPLLFLLG  179 (452)
T ss_pred             HHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHH---hC-ChHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            99999988764    78889999999999998877655544442   11 000000000000           00     


Q ss_pred             H-hCCC---------------------chhhHHHH--------Hhhhhc----CCCCCcchhH-----hhhcccchhHHH
Q 014286          189 L-LGGS---------------------HVKSSLAE--------LSKLDR----GDDGDIVKFE-----ELLYGRHFRVVF  229 (427)
Q Consensus       189 ~-~~~~---------------------~~~~~~~~--------~~~~~~----~~~~~~~~~~-----~~~~~~~~~~~~  229 (427)
                      . ....                     ..++..++        .+++.+    .++.++.+.+     ..++++..+...
T Consensus       180 ~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (452)
T PRK11273        180 MAWFNDWHAALYMPAFAAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKHEQELTAKQIFMQYVLPNKLLWYIA  259 (452)
T ss_pred             HHHhccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCChhhhhhccccccccccCCCccHHHHHHHHHHcChHHHHHH
Confidence            0 0000                     00000000        000000    0000111122     244555555444


Q ss_pred             HHHHHHHhhhccchhHHHHhHHHHHH-hcCCChh---HHHHHHHHHHHHHHHhHhhhhccc--Cccchhh-hhhHHHHHH
Q 014286          230 IGSTLFALQQLSGINAIFYFSSSVFK-SAGLSSG---LANVFVGIANLLGSVVAMVLMDKL--GRKALLQ-WSFFSMAVS  302 (427)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~--g~~~~~~-~~~~~~~~~  302 (427)
                      +...+...    .......+.|.+++ ..|++..   ....+..++.+++.++.|+++||+  +||+... ....+..++
T Consensus       260 l~~~~~~~----~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~  335 (452)
T PRK11273        260 IANVFVYL----LRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIA  335 (452)
T ss_pred             HHHHHHHH----HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHH
Confidence            44333332    22333445565554 4576654   445566778888999999999998  4444322 222222222


Q ss_pred             HHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHH-HHHHHHHHH
Q 014286          303 MAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFF-VGLLFLRLL  381 (427)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~-~~~~~g~l~  381 (427)
                      ...+....      ....+.........+... .+.......+..|.+|++.||++.|+.+...++|+.+ +|.+.|.+.
T Consensus       336 ~~~~~~~~------~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~  408 (452)
T PRK11273        336 TIVYWLNP------AGNPTVDMACMIVIGFLI-YGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTV  408 (452)
T ss_pred             HHHHHHhc------ccChHHHHHHHHHHHHHH-HhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence            22221111      111112222222222211 1112223335678999999999999999999998765 799999999


Q ss_pred             HHhccchhHHHHHHHHHHHHHHHHHh
Q 014286          382 EQLGPQLLYSIFGTFCLMAVAFVKRN  407 (427)
Q Consensus       382 ~~~g~~~~~~~~~~~~~~~~~~~~~~  407 (427)
                      |+.||+..|.+++++++++.+....+
T Consensus       409 ~~~g~~~~f~~~~~~~~~~~~~~~~~  434 (452)
T PRK11273        409 DFFGWDGGFMVMIGGSILAVILLIVV  434 (452)
T ss_pred             HHhcchHHHHHHHHHHHHHHHHHHHH
Confidence            99999999988888777776655433

>PRK09952 shikimate transporter; Provisional

Probab=99.96  E-value=7.7e-26  Score=210.86  Aligned_cols=346  Identities=15%  Similarity=0.103  Sum_probs=207.6

Q ss_pred             HHHHHHHHHhhhhhccccccccchhhh-hhhcc--CCCCchhHHHHHH-----HHHHHHHHHHHHhHHhhhcccchhHHH
Q 014286           50 FPHVLVATLSSFLFGYHLGVVNEPLES-ISLDL--GFNGNTLAEGLVV-----SMCLGGAFIGSTLSGWIADGVGRRRAF  121 (427)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~--~~~~~~~~~g~~~-----s~~~l~~~~~~~~~G~l~dr~Grr~~l  121 (427)
                      ++.+....++.+.+++|...++.+.|. +.+++  +.++.  + +++.     ++.+++..+++++.|+++||+|||+++
T Consensus        21 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l   97 (438)
T PRK09952         21 RRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA--M-GTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRML   97 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH--H-HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHH
Confidence            346777888999999999998888774 45555  45443  2 5543     345567789999999999999999999


Q ss_pred             HHhhHHHHHHHHHHHhhhhhH--------HHHHHHHHHhhhccccccceeecccCCchhhhhcCChHHHHH---------
Q 014286          122 QLCALPMIIGASISATTRNLI--------GMLLGRFVVGTGMGLGPTVAALYVTESPHWLYKKGRTAEAEA---------  184 (427)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~---------  184 (427)
                      +.+.++++++++++++++|++        .++++|+++|++.|+..+....++.|.    ..++++.....         
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~----~p~~~rg~~~~~~~~g~~~G  173 (438)
T PRK09952         98 MLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVES----APKNKKAFYSSGVQVGYGVG  173 (438)
T ss_pred             HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHh----CCCCCCcHHHHHHHHHHHHH
Confidence            999999999999999999987        588999999999999998888888762    11111110000         


Q ss_pred             -HHH-----HHh---------CCCc----------------hhh---HHHHH-hhh-hcCCCCCcchhH-hhhcccchhH
Q 014286          185 -EFE-----KLL---------GGSH----------------VKS---SLAEL-SKL-DRGDDGDIVKFE-ELLYGRHFRV  227 (427)
Q Consensus       185 -~~~-----~~~---------~~~~----------------~~~---~~~~~-~~~-~~~~~~~~~~~~-~~~~~~~~~~  227 (427)
                       .+.     .+.         ...+                .+.   +.++. ++. +.++.+++.+.. .++++++.+.
T Consensus       174 ~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  253 (438)
T PRK09952        174 LLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQAAAKKRIPVIEALLRHPGAFL  253 (438)
T ss_pred             HHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhcccccccCCHHHHHHHchHHHH
Confidence             000     000         0000                000   00000 000 000111111222 3444443333


Q ss_pred             HHHHHHHHHhhhccchhHHHHhHHHHHHhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHH
Q 014286          228 VFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMA  304 (427)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~  304 (427)
                      ....  ...+.....+....+..++..+..|.+..   ......++..+++.++.|+++||+|||+.+..+.++..++..
T Consensus       254 ~~~~--~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~  331 (438)
T PRK09952        254 KIIA--LRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAF  331 (438)
T ss_pred             HHHH--HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence            2221  11222222222223333344455677765   234445666778888999999999999988877665554433


Q ss_pred             HHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 014286          305 IQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHW-VINFFVGLLFLRLLEQ  383 (427)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~-~g~~~~~~~~g~l~~~  383 (427)
                      .+......    ....+..+....+.+++.+.. .+..++++.|.+|++.|+++.|+.+.... +++.++|.+.+.+.+.
T Consensus       332 ~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~  406 (438)
T PRK09952        332 PFFMALEA----QSIFWIVFFSIMLANIAHDMV-VCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTY  406 (438)
T ss_pred             HHHHHHHc----CChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33222110    111122222222223333322 34455688999999999999999776655 8999999999999886


Q ss_pred             hc--cchhHHHHHHHHHHHHHHHHHhccC
Q 014286          384 LG--PQLLYSIFGTFCLMAVAFVKRNVVE  410 (427)
Q Consensus       384 ~g--~~~~~~~~~~~~~~~~~~~~~~~~~  410 (427)
                      .+  |...+...+++.+++.+..+ ..++
T Consensus       407 ~~~~~~~~~~~~~~~~~i~~v~~~-~~~~  434 (438)
T PRK09952        407 FGGSWHSVAIYLLAGCLISAMTAL-LMKD  434 (438)
T ss_pred             cCCCchHHHHHHHHHHHHHHHHHH-Hccc
Confidence            53  66667666666666655553 3444

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.95  E-value=7.6e-27  Score=220.93  Aligned_cols=323  Identities=13%  Similarity=0.025  Sum_probs=212.3

Q ss_pred             HHHHHHHHHHhhhhhccccccccchhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHhhHHH
Q 014286           49 SFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPM  128 (427)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~  128 (427)
                      .+..+..++++.++..+|.++++..+|.+.+|+|.+.++.  +|+.+.|.+++.++++++|+++||+|||++++.+.+++
T Consensus         4 ~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~--~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~   81 (495)
T PRK14995          4 QWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNEL--LWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLF   81 (495)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHH--HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            3557888999999999999999999999999999876666  89999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHhhhccccccceeecccCC--c-hh-------------------------hhhcCChH
Q 014286          129 IIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTES--P-HW-------------------------LYKKGRTA  180 (427)
Q Consensus       129 ~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~--~-~~-------------------------~~~~~~~~  180 (427)
                      .++++++++++|++.++++|+++|+|.+...+.....+.+.  + +.                         +.....+.
T Consensus        82 ~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr  161 (495)
T PRK14995         82 GLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWG  161 (495)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChH
Confidence            99999999999999999999999999998777654433210  0 00                         00000000


Q ss_pred             HHHHH---------HHH-HhCCCchhh-----HHH--------------HHhhh--------------------------
Q 014286          181 EAEAE---------FEK-LLGGSHVKS-----SLA--------------ELSKL--------------------------  205 (427)
Q Consensus       181 ~~~~~---------~~~-~~~~~~~~~-----~~~--------------~~~~~--------------------------  205 (427)
                      .....         ... .........     +..              ..++.                          
T Consensus       162 ~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~  241 (495)
T PRK14995        162 SVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLLGLFIR  241 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHH
Confidence            00000         000 000000000     000              00000                          


Q ss_pred             hcCCCCCcchhHhhhcccchhHHHHHHHHHHhhhccchhHHHHhHHH-HHHhcCCChh---HHHHHHHHHHHHHHHhHhh
Q 014286          206 DRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSS-VFKSAGLSSG---LANVFVGIANLLGSVVAMV  281 (427)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~  281 (427)
                      .+.+.+++.-..+++|++.+....+..+....    ......++.|. +....|.++.   ....+..++..++.++.|+
T Consensus       242 ~e~~~~~p~~~~~lf~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~  317 (495)
T PRK14995        242 TQLAASRPMIDMRLFTHRIILSGVVMAMTAMI----TLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGI  317 (495)
T ss_pred             HHhcCCCCCcCHHHhCCcccHHHHHHHHHHHH----HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            00000000111245555554443333322222    12222334444 4445677765   5677778888999999999


Q ss_pred             hhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHH
Q 014286          282 LMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAV  361 (427)
Q Consensus       282 l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~  361 (427)
                      +.||+|+|+.+..+..+.+++...+.....     ....+.......+.+.+.+....+... ...+..|+++++.+.++
T Consensus       318 l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~-----~~~~~~~~~~~~l~G~g~g~~~~~~~~-~~~~~~~~~~~g~~~~~  391 (495)
T PRK14995        318 LVSRLGLRLVATGGMALSALSFYGLAMTDF-----STQQWQAWGLMALLGFSAASALLASTS-AIMAAAPPEKAAAAGAI  391 (495)
T ss_pred             HHHHcCchHHHHHHHHHHHHHHHHHHHhcC-----CCchHHHHHHHHHHHHhHHHHHHHHHH-HHHhcCCHHhcchHHHH
Confidence            999999999888887777766655543321     112223334445555555544444444 66677899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 014286          362 CMSVHWVINFFVGLLFLRLLEQ  383 (427)
Q Consensus       362 ~~~~~~~g~~~~~~~~g~l~~~  383 (427)
                      .++..++|+.+|+.+.|.+.++
T Consensus       392 ~~~~~~lG~~~G~ai~g~i~~~  413 (495)
T PRK14995        392 ETMAYELGAGLGIAIFGLLLSR  413 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999988763

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.95  E-value=6.6e-26  Score=208.35  Aligned_cols=334  Identities=18%  Similarity=0.128  Sum_probs=211.1

Q ss_pred             HHHHHHHhhhhhccccccccchhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHhhHHHHHH
Q 014286           52 HVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIG  131 (427)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~  131 (427)
                      .++.+.++.+..........+.+|.+.+++|++.++.  |+..+.+.++..+++++.|+++||+|||++++.+.++.+++
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~   98 (394)
T PRK10213         21 AVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVA--GQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLS   98 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHH
Confidence            3334444433333343355567899999999876666  99999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhHHHHHHHHHHhhhccccccceeecccCCchhhhhcCChHHHHHHHHH------Hh---------CC-Cc-
Q 014286          132 ASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTESPHWLYKKGRTAEAEAEFEK------LL---------GG-SH-  194 (427)
Q Consensus       132 ~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~------~~---------~~-~~-  194 (427)
                      ++++++++|++.++++|+++|++.+...+....++.|    ...+++...+......      ..         .. .+ 
T Consensus        99 ~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~----~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~  174 (394)
T PRK10213         99 CLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMR----LVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWR  174 (394)
T ss_pred             HHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHH----HcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHH
Confidence            9999999999999999999999999988888877765    2222222222211110      00         00 00 


Q ss_pred             ----------h---hhHHHHHhhhhcCCCCCcchhHhhhcccchhHHHHHHHHHHhhhccchhHHHHhHHHHHHhcCCCh
Q 014286          195 ----------V---KSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSS  261 (427)
Q Consensus       195 ----------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  261 (427)
                                .   .......++.++++++...+.++.++++..+...+..++.....   .....+..|.+.++.|.+.
T Consensus       175 ~~f~~~~~l~~~~~l~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~p~~~~~~g~s~  251 (394)
T PRK10213        175 NVFNAAAVMGVLCIFWIIKSLPSLPGEPSHQKQNTFRLLQRPGVMAGMIAIFMSFAGQ---FAFFTYIRPVYMNLAGFGV  251 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCcccccchhHHHHHhcCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcCCCh
Confidence                      0   00000111111111122233456677766665444333333221   2222333466667778776


Q ss_pred             h---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcc
Q 014286          262 G---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGA  338 (427)
Q Consensus       262 ~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (427)
                      .   ......+++.+++.++.+++.||.+ |+.+..+..+..+...++.....       ..+.......+.+.+++.. 
T Consensus       252 ~~~g~~~~~~~~~~iig~~~~~~l~~r~~-~~~l~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~~l~G~~~~~~-  322 (394)
T PRK10213        252 DGLTLVLLSFGIASFVGTSLSSFILKRSV-KLALAGAPLVLAVSALVLTLWGS-------DKIVATGVAIIWGLTFALV-  322 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHHhh-------hHHHHHHHHHHHHHHHHhh-
Confidence            5   4566677888999999999999954 44444333333333222222111       1233334444455444433 


Q ss_pred             cchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHH
Q 014286          339 GPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFV  404 (427)
Q Consensus       339 ~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~  404 (427)
                      .+...+.+.+..| ++++.+.++.....++|..+|+.+.|.+.|..|+...+...+++.++..+..
T Consensus       323 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~  387 (394)
T PRK10213        323 PVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLTALLV  387 (394)
T ss_pred             hHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHHH
Confidence            3434436667667 5567888888888899999999999999999998878877766655554433

>PRK03699 putative transporter; Provisional

Probab=99.95  E-value=1.4e-26  Score=213.49  Aligned_cols=333  Identities=14%  Similarity=0.088  Sum_probs=214.1

Q ss_pred             HHHHHHHhhhhhccccccccchhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHhhHHHHHH
Q 014286           52 HVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIG  131 (427)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~  131 (427)
                      ....++++.+..+.+....++.+|.+.+++|++.++.  +++.+.+.+++.++++++|++.||+|||+++..+.++.+++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~--g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~   85 (394)
T PRK03699          8 LTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSM--SNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILA   85 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            4556677778888888888999999999999876655  99999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhHHHHHHHHHHhhhccccccceeecccCCchhhhhcCChHHHHHHH---------------HHHhCCC-ch
Q 014286          132 ASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTESPHWLYKKGRTAEAEAEF---------------EKLLGGS-HV  195 (427)
Q Consensus       132 ~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~-~~  195 (427)
                      .+++++++|++.++++|+++|++.|...+....++.|.    ..+++........               ..+.... ..
T Consensus        86 ~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~----~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw  161 (394)
T PRK03699         86 VAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHV----YEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEW  161 (394)
T ss_pred             HHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhh----cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccH
Confidence            99999999999999999999999998887777776652    1211111111000               0000000 00


Q ss_pred             hhH---------------H-HHHhhhhcCCC-CCcchhHhhhcccchhHHHHHHHHHHhhhccchhHHHHhHHHHH-Hhc
Q 014286          196 KSS---------------L-AELSKLDRGDD-GDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVF-KSA  257 (427)
Q Consensus       196 ~~~---------------~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  257 (427)
                      +..               . .+.++.+++++ +.+...++.+ ++..+...+..++...    .......|.|.+. +..
T Consensus       162 ~~~f~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~p~~l~~~~  236 (394)
T PRK03699        162 YWVYACIGLVYVAIFILTLFSEFPALGKHAPKADKPVAKEKW-GIGVLFLAIAALLYIL----AQLTFISWVPEYAQKKF  236 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCccccccCccccCccccccC-ChHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHc
Confidence            000               0 00000000000 0011111111 1122222222222221    2333445566555 556


Q ss_pred             CCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHH
Q 014286          258 GLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTF  334 (427)
Q Consensus       258 g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (427)
                      |.+..   .......++..+++++.++++||+++|+.+.....+..+...++....+        .+......++.+.+.
T Consensus       237 g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~G~~~  308 (394)
T PRK03699        237 GMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDD--------PSHLLYAILGLGFFS  308 (394)
T ss_pred             CCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCC--------chHHHHHHHHHHHHH
Confidence            88765   4556667788999999999999999998887766655554433332111        112222233333322


Q ss_pred             hhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Q 014286          335 ALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVK  405 (427)
Q Consensus       335 ~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  405 (427)
                      + ...+...++..|..| +.++...+......++|..++|.+.|.+.+..|++..+++.+++++++.+...
T Consensus       309 ~-~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~  377 (394)
T PRK03699        309 S-AIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCI  377 (394)
T ss_pred             H-HHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHH
Confidence            2 233444446666666 45678889999999999999999999999999999898888877776655443

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.95  E-value=1.1e-26  Score=221.13  Aligned_cols=339  Identities=17%  Similarity=0.188  Sum_probs=212.7

Q ss_pred             hHHHHHHHHHHhhhhhccccccccchhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHhhHH
Q 014286           48 LSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALP  127 (427)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~  127 (427)
                      +.+..+..++++.+.+.++....++.+|.+.+++|++.++.  +++.+.+.+++.+++++.|+++||+|||+++..+.++
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~   94 (496)
T PRK03893         17 AQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQA--ASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVL   94 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence            44556777888888888999999999999999999876655  8999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHhhhccccccceeecccCCchhhhhcCChHHHHHHH------HH---------HhCC
Q 014286          128 MIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTESPHWLYKKGRTAEAEAEF------EK---------LLGG  192 (427)
Q Consensus       128 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~------~~---------~~~~  192 (427)
                      .+++.+++++++|++.+++.|++.|++.+...+....++.|..    .+++........      ..         +...
T Consensus        95 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~----~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~  170 (496)
T PRK03893         95 FSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESW----PKHLRNKASGFLISGFSIGAVVAAQVYSLVVPV  170 (496)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999888777777666521    111100000000      00         0000


Q ss_pred             -C----------------chhhHHHHHh--hhhcCCCCCcchhHhh-hcccc-hh-------------------------
Q 014286          193 -S----------------HVKSSLAELS--KLDRGDDGDIVKFEEL-LYGRH-FR-------------------------  226 (427)
Q Consensus       193 -~----------------~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~-~~-------------------------  226 (427)
                       .                ......++.+  +.+++++....+..+. .+.+. ..                         
T Consensus       171 ~~w~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (496)
T PRK03893        171 WGWRALFFIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHRIINILLTLAAAAALWFCFAGNLQNAAI  250 (496)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhccccccchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcchhH
Confidence             0                0000000000  0000000000111111 10000 00                         


Q ss_pred             ------------------------HHHHHHHHHHhhhccchhHHHHhHHHHH-HhcCCChh---HHHHHHHHHHHHHHHh
Q 014286          227 ------------------------VVFIGSTLFALQQLSGINAIFYFSSSVF-KSAGLSSG---LANVFVGIANLLGSVV  278 (427)
Q Consensus       227 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~---~~~~~~~~~~~~~~~~  278 (427)
                                              ..........+..+........+.|.+. ++.|.+..   .......++.+++.++
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~  330 (496)
T PRK03893        251 VAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCV  330 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence                                    0000000000000001111233455555 47778765   5666777888899999


Q ss_pred             HhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhH
Q 014286          279 AMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKA  358 (427)
Q Consensus       279 ~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~  358 (427)
                      .|+++||++||+.+..+..+..+..+.+....      ....+.... ......+.+.+..+....++.|.+|++.||++
T Consensus       331 ~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  403 (496)
T PRK03893        331 GGFLGDWLGTRKAYVCSLLISQLLIIPVFAIG------GANVWVLGL-LLFFQQMLGQGISGLLPKLIGGYFDTEQRAAG  403 (496)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc------ccHHHHHHH-HHHHHHHHhcccchhhHHHHHhhCCHHHhhcc
Confidence            99999999999988777655554443322211      111122111 22222222333344555588899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Q 014286          359 MAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLM  399 (427)
Q Consensus       359 ~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~  399 (427)
                      +|+.+....+|+.++|.+.|.+.|..|+...+...++++.+
T Consensus       404 ~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~~~  444 (496)
T PRK03893        404 LGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSLTF  444 (496)
T ss_pred             cchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH
Confidence            99999999999999999999999999988777655544433

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.95  E-value=1.6e-26  Score=214.25  Aligned_cols=340  Identities=16%  Similarity=0.104  Sum_probs=216.9

Q ss_pred             chhHHHHHHHHHHhhhhhccccccccchhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHhh
Q 014286           46 WKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCA  125 (427)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~  125 (427)
                      .++.+...+.+.+..+...++...+.|.+|.+.+++|.+.++.  ++..+.+.+++.+++++.|+++||+|||+++..+.
T Consensus         8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~   85 (406)
T PRK15402          8 GRQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWV--PTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGV   85 (406)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHH
Confidence            3455666777777888888888888999999999999876555  89999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccceeecccCCchhhhhcCChHHHHHHHHH------H----------
Q 014286          126 LPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTESPHWLYKKGRTAEAEAEFEK------L----------  189 (427)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~------~----------  189 (427)
                      .+.+++.+++.++++++.+++.|+++|++.+...+....++.|.    ..+++..........      .          
T Consensus        86 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~----~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~  161 (406)
T PRK15402         86 AFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQES----FEEADAIKITALMANVALLAPLLGPLVGAALI  161 (406)
T ss_pred             HHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHH----hChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999887776666665541    111111111110000      0          


Q ss_pred             --hCCCch------------hhHHHHHhhhhcCC-CC-----CcchhHhhhcccchhHHHHHHHHHHhhhccchhHHHHh
Q 014286          190 --LGGSHV------------KSSLAELSKLDRGD-DG-----DIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYF  249 (427)
Q Consensus       190 --~~~~~~------------~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (427)
                        .+....            .......++.++++ ++     ...++++.++++..+...+...+.....    .....+
T Consensus       162 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  237 (406)
T PRK15402        162 HVLPWRGMFVLFAALAALSFFGLWRAMPETAGRVGEKLSLKELGRDYKLVLKNRRFVAGALALGLVSLPL----LAWIAL  237 (406)
T ss_pred             HccCccHHHHHHHHHHHHHHHHHHHhCCCCCccccccccHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH----HHHHHH
Confidence              000000            00000011111100 00     1123455666766655444433332211    112222


Q ss_pred             HHHH-HHhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHH
Q 014286          250 SSSV-FKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVG  325 (427)
Q Consensus       250 ~~~~-~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (427)
                      .|.+ .+..+.++.   .......++.+++.++.+++.||+++|+.+..+..+..++..++.......   ....+....
T Consensus       238 ~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~  314 (406)
T PRK15402        238 SPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVIS---SHAYLWLTA  314 (406)
T ss_pred             hHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcc---cccHHHHHH
Confidence            3433 355677765   334445567788999999999999999988888877777766665543211   112223334


Q ss_pred             HHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Q 014286          326 GMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMA  400 (427)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~  400 (427)
                      ...+.+.+.+....+... ..... +++++|++.++.+....++..+|+.+.+.+.+..+........++..++.
T Consensus       315 ~~~~~g~g~~~~~~~~~~-~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~  387 (406)
T PRK15402        315 GLSLYAFGIGLANAGLYR-LTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLW  387 (406)
T ss_pred             HHHHHHHHHHHHhhhHHH-HHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHH
Confidence            444455544433333222 33333 34889999999999999999999999999988777654443333333333

>PRK10504 putative transporter; Provisional

Probab=99.95  E-value=2.2e-26  Score=217.49  Aligned_cols=322  Identities=16%  Similarity=0.183  Sum_probs=209.4

Q ss_pred             HHHHHHhhhhhccccccccchhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHhhHHHHHHH
Q 014286           53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGA  132 (427)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~  132 (427)
                      +..++++.+...++...+++.+|.+.+++|.+..+.  +++.+.+.++..++.+++|+++||+|||++++.+.++++++.
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~   89 (471)
T PRK10504         12 LWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHM--HMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGS   89 (471)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH
Confidence            445666777778888888899999999999866555  899999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhHHHHHHHHHHhhhccccccceeecccCC-ch--------------------------hhhhcCChHHHHHH
Q 014286          133 SISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTES-PH--------------------------WLYKKGRTAEAEAE  185 (427)
Q Consensus       133 ~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~-~~--------------------------~~~~~~~~~~~~~~  185 (427)
                      ++++++++++.++++|+++|++.+...+....++.|. |+                          ++.....+......
T Consensus        90 ~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~  169 (471)
T PRK10504         90 LFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLI  169 (471)
T ss_pred             HHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHH
Confidence            9999999999999999999999998887776665541 10                          00000000000000


Q ss_pred             H------H----HHhCCCch----hhHHHH--------------Hhh---------------------------hhcCCC
Q 014286          186 F------E----KLLGGSHV----KSSLAE--------------LSK---------------------------LDRGDD  210 (427)
Q Consensus       186 ~------~----~~~~~~~~----~~~~~~--------------~~~---------------------------~~~~~~  210 (427)
                      .      .    ........    +.+...              ..+                           +++..+
T Consensus       170 ~~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (471)
T PRK10504        170 NIPVGIIGAIATLMLMPNYTMQTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHARNNN  249 (471)
T ss_pred             HHHHHHHHHHHHHHhCCCccccCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            0      0    00000000    000000              000                           000000


Q ss_pred             CCcchhHhhhcccchhHHHHHHHHHHhhhccchhHHHHhHHHHHH-hcCCChh---HHHHHHHHHHHHHHHhHhhhhccc
Q 014286          211 GDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFK-SAGLSSG---LANVFVGIANLLGSVVAMVLMDKL  286 (427)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~  286 (427)
                      ++..+ .++++++.++..+...++....    .....++.|++.+ ..|.++.   +...+..++.+++.++.+++.||+
T Consensus       250 ~~~~~-~~l~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~  324 (471)
T PRK10504        250 RALFS-LKLFRTRTFSLGLAGSFAGRIG----SGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRF  324 (471)
T ss_pred             CCccC-HHHhcccchHHHHHHHHHHHHH----HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            11111 2456677666655544444332    3334445555555 3666654   455556667777788999999999


Q ss_pred             CccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHH
Q 014286          287 GRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVH  366 (427)
Q Consensus       287 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~  366 (427)
                      |+|+.+..+..+..+...++.+...     ....+.......+.+.+.+....+. .....+..|++.++.+.|+.++..
T Consensus       325 g~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~  398 (471)
T PRK10504        325 GYRRVLVATTLGLALVSLLFMLVAL-----LGWYYLLPFVLFLQGMVNSTRFSSM-NTLTLKDLPDNLASSGNSLLSMIM  398 (471)
T ss_pred             CchHHHHHHHHHHHHHHHHHHhccc-----cccHHHHHHHHHHHHHHHHHHHHHH-HHHHHHcCCHHhccchHHHHHHHH
Confidence            9999998888777766555543221     1112222222333334444333333 347777889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhccc
Q 014286          367 WVINFFVGLLFLRLLEQLGPQ  387 (427)
Q Consensus       367 ~~g~~~~~~~~g~l~~~~g~~  387 (427)
                      .+|..+++.+.|.+.+..|+.
T Consensus       399 ~~g~~ig~~i~g~ll~~~g~~  419 (471)
T PRK10504        399 QLSMSIGVTIAGLLLGLFGQQ  419 (471)
T ss_pred             HHHHHHHHHHHHHHHHHhhhh
Confidence            999999999999999887763

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.95  E-value=9.8e-27  Score=216.31  Aligned_cols=342  Identities=17%  Similarity=0.102  Sum_probs=220.9

Q ss_pred             ccccccccchhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHhhHHHHHHHHHHHh-----h
Q 014286           64 GYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISAT-----T  138 (427)
Q Consensus        64 ~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~-----~  138 (427)
                      .+......+.+|.+.++++.+  ..+.|++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++.+.     .
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~s--~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~  107 (417)
T PRK10489         30 IFGLGLLGVAVPVQIQMMTGS--TLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPE  107 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCC
Confidence            334456677889988888764  445599999999999999999999999999999999988888877766543     5


Q ss_pred             hhhHHHHHHHHHHhhhccccccceeecccCCchhhhhcCChHHHHHHHH------HHhCCC---------chhh------
Q 014286          139 RNLIGMLLGRFVVGTGMGLGPTVAALYVTESPHWLYKKGRTAEAEAEFE------KLLGGS---------HVKS------  197 (427)
Q Consensus       139 ~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~------~~~~~~---------~~~~------  197 (427)
                      ++++.+++.|+++|++.+...+....++++.    ..+++...+.....      ...+..         ..+.      
T Consensus       108 ~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~  183 (417)
T PRK10489        108 PSLLAIYLLGLWDGFFGSLGVTALLAATPAL----VGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAA  183 (417)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHhhhhhhc----cCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHH
Confidence            6789999999999999887777666666642    11111111111100      000000         0000      


Q ss_pred             --------HHHHHhhhhcC---CCCCc----chhHhhhcccchhHHHHHHHHHHhhhccchhHHHHhHHHHHHh-cCCCh
Q 014286          198 --------SLAELSKLDRG---DDGDI----VKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKS-AGLSS  261 (427)
Q Consensus       198 --------~~~~~~~~~~~---~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~  261 (427)
                              .....++.+++   +++..    ..++..++++..+..++...+...     ......+.|.+.++ .|.+.
T Consensus       184 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~p~~~~~~~g~~~  258 (417)
T PRK10489        184 AGTFITLLPLLRLPALPPPPQPREHPLRSLLAGFRFLLASPVVGGIALLGGLLTM-----ASAVRVLYPALADEVWQMGA  258 (417)
T ss_pred             HHHHHHHHHHHhCCCCCCCCcccccchHHHHHHHHHHHcChHHHHHHHHHHHHHH-----HHhHHHhhHHHHHhccCCCh
Confidence                    00000111000   01111    123344555554444333322221     12223344555554 67765


Q ss_pred             h---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcc
Q 014286          262 G---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGA  338 (427)
Q Consensus       262 ~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (427)
                      .   .......++.+++.++.+++.||.++++.+..+..+.+++.+++....        +.+...+...+++.+.+. .
T Consensus       259 ~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~g~~~~~-~  329 (417)
T PRK10489        259 AQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMP--------MWILAVLCLALFGYLSAI-S  329 (417)
T ss_pred             hHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccc--------hHHHHHHHHHHHHHHHHH-H
Confidence            5   455667788889999999999998777777777766666655444321        112233333333333322 2


Q ss_pred             cchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhccCCCCCCHHH
Q 014286          339 GPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQE  418 (427)
Q Consensus       339 ~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (427)
                      .+...+++.|..|++.||++.|+.+...++|..++|.+.|.+.+..|+...+...+++.++..++.....++.|+++++|
T Consensus       330 ~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (417)
T PRK10489        330 SLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGELRRFRQTP  409 (417)
T ss_pred             HHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhccccccccccc
Confidence            34455588899999999999999999999999999999999999999988888888877777777777788888888887


Q ss_pred             HHHhhCC
Q 014286          419 IEIALLP  425 (427)
Q Consensus       419 ~~~~~~~  425 (427)
                      .|++..+
T Consensus       410 ~~~~~~~  416 (417)
T PRK10489        410 PEVDASD  416 (417)
T ss_pred             ccCCCCC
Confidence            7766543

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.95  E-value=2.3e-26  Score=212.97  Aligned_cols=337  Identities=15%  Similarity=0.119  Sum_probs=213.2

Q ss_pred             hhhhccccccccchhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHhhHHHHHHHHHHHhhh
Q 014286           60 SFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTR  139 (427)
Q Consensus        60 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~  139 (427)
                      ++...++...++...|.+.+++|++..+.  |++.+++.++..++++++|+++||+|||+++..+.++.+++.+++++++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~   80 (399)
T TIGR00893         3 TVINYLDRANLSFAAPMLQEDLGLSAAQY--GYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAG   80 (399)
T ss_pred             ehHHHHHHHhhhHhHHHHHHhhCCChhhH--HHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHc
Confidence            34555677788888999999999876666  9999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHhhhccccccceeecccCCch---------------------------hhhhcCChHHHHHH------H
Q 014286          140 NLIGMLLGRFVVGTGMGLGPTVAALYVTESPH---------------------------WLYKKGRTAEAEAE------F  186 (427)
Q Consensus       140 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~---------------------------~~~~~~~~~~~~~~------~  186 (427)
                      |++.++++|+++|++.+...+....++.|..+                           ++.....+......      .
T Consensus        81 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  160 (399)
T TIGR00893        81 AYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGII  160 (399)
T ss_pred             CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence            99999999999999999888888887775210                           00000011100000      0


Q ss_pred             HHH---hCCCchhh-------HHHHHh-hh-------hcCCCCCcchhHhhhcccchhHHHHHHHHHHhhhccchhHHHH
Q 014286          187 EKL---LGGSHVKS-------SLAELS-KL-------DRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFY  248 (427)
Q Consensus       187 ~~~---~~~~~~~~-------~~~~~~-~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (427)
                      ...   ......+.       +.++.. +.       +++++..+...++.++++..+...+..++...    .......
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~  236 (399)
T TIGR00893       161 WGVLWLKFIPDPPQKAKWLTEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNI----GLGFFLT  236 (399)
T ss_pred             HHHHhhheecCCCCccccCCHHHHhhcchhhccccccccccCCCccchHHHhcCHHHHHHHHHHHHHHh----HHHHHHH
Confidence            000   00000000       000000 00       00011122334566666655544444333332    2333334


Q ss_pred             hHHHHH-HhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhh-hhhHHHHHHHHHHHHHhhcCCCCCchhHHH
Q 014286          249 FSSSVF-KSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQ-WSFFSMAVSMAIQVAASSSYIPGSASLYLS  323 (427)
Q Consensus       249 ~~~~~~-~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (427)
                      +.+.+. +..+.+..   .......++.+++.++.+++.||++||+... .......++.+.......... .....+. 
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-  314 (399)
T TIGR00893       237 WFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATN-YVNIPYA-  314 (399)
T ss_pred             HHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhc-cchhHHH-
Confidence            444443 45676654   5666777888899999999999999886211 111111111111111100000 0111122 


Q ss_pred             HHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHH
Q 014286          324 VGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLG-PQLLYSIFGTFCLMAVA  402 (427)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~  402 (427)
                      ........ +...+..+...++..|.+|+++|+++.|+.+.+.++|..++|.+.|.+.|..| +...+.+.+++.+++.+
T Consensus       315 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~  393 (399)
T TIGR00893       315 ALALVALG-FFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGAL  393 (399)
T ss_pred             HHHHHHHH-HhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHH
Confidence            22222222 22223567777799999999999999999999999999999999999999988 88888888877777665


Q ss_pred             HHH
Q 014286          403 FVK  405 (427)
Q Consensus       403 ~~~  405 (427)
                      ...
T Consensus       394 ~~~  396 (399)
T TIGR00893       394 SYL  396 (399)
T ss_pred             HHH
Confidence            543

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.95  E-value=1.2e-25  Score=203.62  Aligned_cols=315  Identities=13%  Similarity=0.066  Sum_probs=187.6

Q ss_pred             ccccchhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHhhHHHHHHHHHHHhhhhhHHHHHH
Q 014286           68 GVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLG  147 (427)
Q Consensus        68 ~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~  147 (427)
                      ..+++.+|.+++|+|++.++.  |++.+.+.+++.+++++.|+++||+|||+++..++.....+.+.....+|++.++++
T Consensus         8 ~~~~~~lp~i~~~~~~s~~~~--g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   85 (368)
T TIGR00903         8 VTFSPVLSLVAEDIDVSKEEL--GLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLAC   85 (368)
T ss_pred             HHHHhhHHHHHHHhCcCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            456789999999999876655  999999999999999999999999999998776655554544333334799999999


Q ss_pred             HHHHhhhccccccceeecccCCchhhhhcCChHHHHHHHHHH------hC----------CCc--------------hhh
Q 014286          148 RFVVGTGMGLGPTVAALYVTESPHWLYKKGRTAEAEAEFEKL------LG----------GSH--------------VKS  197 (427)
Q Consensus       148 r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~------~~----------~~~--------------~~~  197 (427)
                      |+++|++.+... .....+.|   |.. ++++..+.......      .+          ..+              ...
T Consensus        86 R~l~G~g~~~~~-~~~~~~~~---~~~-~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~  160 (368)
T TIGR00903        86 QLLAALGQPFLL-NAFAPAAS---QIR-EERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIIL  160 (368)
T ss_pred             HHHHHhHhHHHH-HHHHHHHH---HcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHH
Confidence            999999998543 33333332   121 12222221111100      00          000              000


Q ss_pred             HHHHHhhhhcCCC--CC----cchhHhhhcccchhHHHHHHHHHHhhhccchhHHHHhHHHHHHhcCCChhHHHHHHHHH
Q 014286          198 SLAELSKLDRGDD--GD----IVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIA  271 (427)
Q Consensus       198 ~~~~~~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  271 (427)
                      .....++.++.++  .+    ..+++++++++..+...+..++...    .+..+..|.|.++++.|++.. ......+.
T Consensus       161 ~~~~lp~~p~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~----~~~~~~~wlp~~L~~~g~s~~-~~~~~~l~  235 (368)
T TIGR00903       161 VLAALPALPFQAAEGFGFKDAVKEFGALAGRKDLWIIGAILGFGVA----LFDNLAIWLEAALRPAGLEDI-AGDAVALA  235 (368)
T ss_pred             HHHHcCCCCCCCCCCcchHHHHHHHHHHHcChhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCChH-HHHHHHHH
Confidence            0000111111000  00    1246678888777666555444443    334445677777777777654 22333344


Q ss_pred             HHHHHHhHhhhhcccCcc---chhh-hhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcccchhhhhcc
Q 014286          272 NLLGSVVAMVLMDKLGRK---ALLQ-WSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLP  347 (427)
Q Consensus       272 ~~~~~~~~g~l~d~~g~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (427)
                      ...+.+..++++||..||   +... ....+.++....+....      +  .+..+....+.+ .+.....+..+++.+
T Consensus       236 ~~~g~~g~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~~------~--~~~~~~~~~l~~-~~~~~~~~~~~~~~~  306 (368)
T TIGR00903       236 ILAGLIGVAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFEL------N--RLALFAFIGIAG-LLMLPAYAIIMDWIG  306 (368)
T ss_pred             HHHHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHcc------c--cHHHHHHHHHHH-HhhhhhHHHHHHHHH
Confidence            444555568888887654   2222 22222232222222111      1  112222222222 222233345666899


Q ss_pred             CcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Q 014286          348 EIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVK  405 (427)
Q Consensus       348 ~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  405 (427)
                      |.+|++.||++.|+.+..+++++..+|.+.+.+..  |....|.++++..+++.+...
T Consensus       307 ~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~~  362 (368)
T TIGR00903       307 KFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIAL  362 (368)
T ss_pred             HhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999988774  666778888887777766653

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.94  E-value=2.1e-25  Score=208.71  Aligned_cols=333  Identities=15%  Similarity=0.122  Sum_probs=203.7

Q ss_pred             HHHHHHHHHhhhhhccccccccchhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHhhHHHH
Q 014286           50 FPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMI  129 (427)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~  129 (427)
                      |.++..+.+...........++..+|.+.+++|.+.++.  +++.+.+.++..++.+++|+++||+|||++++.+.++.+
T Consensus        18 w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~--~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~   95 (455)
T TIGR00892        18 WVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSET--AWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLAS   95 (455)
T ss_pred             hHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhHH--HHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHH
Confidence            444555555554444445566778999999999877776  899999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhhHHHHH-HHHHHhhhccccccceeecccCCchhhhhcCChHHHHHHHHHH-------------------
Q 014286          130 IGASISATTRNLIGMLL-GRFVVGTGMGLGPTVAALYVTESPHWLYKKGRTAEAEAEFEKL-------------------  189 (427)
Q Consensus       130 ~~~~~~~~~~~~~~l~~-~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-------------------  189 (427)
                      +++++++++++++.+++ .|+++|++.+...+....++.+   |+ .+ +...+.......                   
T Consensus        96 ~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~---~~-~~-~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~  170 (455)
T TIGR00892        96 LGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGK---YF-YR-RRPLANGLAMAGSPVFLSTLAPLNQYLFESF  170 (455)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHH---HH-Hh-hHHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence            99999999999998865 5799999998765555444443   22 11 111111110000                   


Q ss_pred             ---------------------hCCCchhhHHHHHhh-hhc---C-CCCC------c---ch--hHhhhcccchhHHHHHH
Q 014286          190 ---------------------LGGSHVKSSLAELSK-LDR---G-DDGD------I---VK--FEELLYGRHFRVVFIGS  232 (427)
Q Consensus       190 ---------------------~~~~~~~~~~~~~~~-~~~---~-~~~~------~---~~--~~~~~~~~~~~~~~~~~  232 (427)
                                           ...........+..+ .+.   . ..++      .   ..  ..+.++++.++......
T Consensus       171 gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (455)
T TIGR00892       171 GWRGSFLILGGLLLHCCVCGALMRPVGPSQRVSKSKSKEGLPPDGSTKKLSKKSTAEKINRFLDFSLFTHRGFLVYLSGN  250 (455)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHhCCCCcccccccccccccCCCCCccccccccchhhhhhhhcchHHhcCchHHHHHHHH
Confidence                                 000000000000000 000   0 0000      0   00  01345566555444443


Q ss_pred             HHHHhhhccchhHHHHhHHHHHHhcCCChh---HHHHHHHHHHHHHHHhHhhhhccc--Cccchhhhhh--HHHHHHHHH
Q 014286          233 TLFALQQLSGINAIFYFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKL--GRKALLQWSF--FSMAVSMAI  305 (427)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~--g~~~~~~~~~--~~~~~~~~~  305 (427)
                      ++.....    .....+.+.+.++.|.+..   ....+.+++.++++++.+++.||.  ++++....+.  +..+++.++
T Consensus       251 ~l~~~~~----~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll  326 (455)
T TIGR00892       251 VIMFLGF----FAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLL  326 (455)
T ss_pred             HHHHHHc----cchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHH
Confidence            3333322    2223344545566777765   455666777888889999999974  3333333322  222222222


Q ss_pred             HHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 014286          306 QVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLG  385 (427)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g  385 (427)
                      +....        +.+..++..++.+.+.+ ...+...+.+.|.+|+++++++.|+++...++|.+++|.+.|.+.+..|
T Consensus       327 ~~~~~--------~~~~~~i~~~~~G~~~g-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g  397 (455)
T TIGR00892       327 CALAG--------DYTGLVIYCIFFGLSFG-SVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATK  397 (455)
T ss_pred             HHHhc--------hHHHHHHHHHHHHHHhc-hHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcC
Confidence            22111        12233333444444433 2334555588888999999999999999999999999999999999875


Q ss_pred             -cchhHHHHHHHHHHHHH
Q 014286          386 -PQLLYSIFGTFCLMAVA  402 (427)
Q Consensus       386 -~~~~~~~~~~~~~~~~~  402 (427)
                       |...|.+.+++.+++.+
T Consensus       398 ~~~~~f~~~~~~~li~~~  415 (455)
T TIGR00892       398 NYKYIFYASGSIVVSAGL  415 (455)
T ss_pred             CcchHHHHhhHHHHHHHH
Confidence             88888887776666544

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.94  E-value=4.9e-25  Score=204.76  Aligned_cols=338  Identities=18%  Similarity=0.143  Sum_probs=207.5

Q ss_pred             HHHHhhhhhccccccccchhhhhhhccCCCCchh---HHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHhhHHHHHH
Q 014286           55 VATLSSFLFGYHLGVVNEPLESISLDLGFNGNTL---AEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIG  131 (427)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~  131 (427)
                      .+.++.+..++......+.+|.+.+++|++..+.   ..|++.+++.++..++++++|+++||+|||+++..+.++.+++
T Consensus        18 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~   97 (408)
T PRK09874         18 VAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIV   97 (408)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHH
Confidence            3344555556666778889999999999876543   3488999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhHHHHHHHHHHhhhccccccceeecccCCchhhhhcCChHHHHHHH------HHHhC---------CCchh
Q 014286          132 ASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTESPHWLYKKGRTAEAEAEF------EKLLG---------GSHVK  196 (427)
Q Consensus       132 ~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~------~~~~~---------~~~~~  196 (427)
                      .++++++++++.+++.|++.|++.+. .+....++.+.    ..+++...+....      ....+         ....+
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~  172 (408)
T PRK09874         98 MVLMGLAQNIWQFLILRALLGLLGGF-VPNANALIATQ----VPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLR  172 (408)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHhhhh-HHhHHHHHHHh----cCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH
Confidence            99999999999999999999997653 34444444331    1111111111100      00000         00000


Q ss_pred             h---------------HHHHHhhhh-cCCCCCc---chhHhhhcccchhHHHHHHHHHHhhhccchhHHHHhHHHHHHhc
Q 014286          197 S---------------SLAELSKLD-RGDDGDI---VKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSA  257 (427)
Q Consensus       197 ~---------------~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (427)
                      .               .....++.. +.+++++   .+..+.++++..........+..  .. .......+.+.+..+.
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~  249 (408)
T PRK09874        173 PVFFITASVLFLCFLVTLFCIRENFQPVSKKEMLHMREVVTSLKNPKLVLSLFVTTLII--QV-ATGSIAPILTLYVREL  249 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCcccccchhhhHHHHHHHhCcCCchHHHHHHHHHHH--HH-HHHHHHHHHHHHHHHH
Confidence            0               000001110 0011111   11223344444332222111111  11 1111222223232222


Q ss_pred             -CCChh------HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHH
Q 014286          258 -GLSSG------LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMF  330 (427)
Q Consensus       258 -g~~~~------~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (427)
                       +....      ......+++.+++.+..|++.||++||+.+..+..+..++.+.+.....        .+...+...+.
T Consensus       250 ~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~  321 (408)
T PRK09874        250 AGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQT--------PLQLGILRFLL  321 (408)
T ss_pred             hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhcc--------HHHHHHHHHHH
Confidence             21111      2334456677788888999999999999988877766655554433211        12333333344


Q ss_pred             HHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhcc
Q 014286          331 VLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVV  409 (427)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  409 (427)
                      +.+.+. ..+...+...+..|++++|+..++.+....+|..++|.+.|.+.+..||+..|.+.+++.+++.+..++..+
T Consensus       322 g~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~  399 (408)
T PRK09874        322 GAADGA-LLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNSLR  399 (408)
T ss_pred             HhhhHh-hHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            443332 234444466777888999999999999999999999999999999999999999998888887776655443

>PRK10133 L-fucose transporter; Provisional

Probab=99.94  E-value=3.7e-25  Score=205.55  Aligned_cols=333  Identities=14%  Similarity=0.101  Sum_probs=215.6

Q ss_pred             HHHHHHHHHhhhhhccccccccchhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHhhHHHH
Q 014286           50 FPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMI  129 (427)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~  129 (427)
                      ...+..+++..+..++.....++.+|.+++++|+++++.  |++.+.+.+++.+++++.|++.||+|||+++..++++++
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~--gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~  102 (438)
T PRK10133         25 IIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQA--GLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYA  102 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence            334455556667777888888999999999999876555  999999999999999999999999999999999999999


Q ss_pred             HHHHHH---HhhhhhHHHHHHHHHHhhhccccccceeecccCCchhhhhcCChHHHH----------HHHHHHhC-----
Q 014286          130 IGASIS---ATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTESPHWLYKKGRTAEAE----------AEFEKLLG-----  191 (427)
Q Consensus       130 ~~~~~~---~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~----------~~~~~~~~-----  191 (427)
                      ++++++   ++++|++.++++|+++|+|.|...+....++.+.+.    ..+.....          ..+....+     
T Consensus       103 ~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~----~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~  178 (438)
T PRK10133        103 LGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGP----ESSGHFRLNLAQTFNSFGAIIAVVFGQSLIL  178 (438)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCC----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999886   468899999999999999999998888887654211    00000000          00000000     


Q ss_pred             -C-C-----------------c-----------------------hhhHHHHHhhhhcCCC------CCcchhHhhhccc
Q 014286          192 -G-S-----------------H-----------------------VKSSLAELSKLDRGDD------GDIVKFEELLYGR  223 (427)
Q Consensus       192 -~-~-----------------~-----------------------~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~  223 (427)
                       . .                 +                       ........++.+.+++      ....+++++++++
T Consensus       179 ~~~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ll~~~  258 (438)
T PRK10133        179 SNVPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAKQGSFSASLSRLARIR  258 (438)
T ss_pred             cCCcccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccccccchhhhHHHHHhCc
Confidence             0 0                 0                       0000000010000000      0112345677777


Q ss_pred             chhHHHHHHHHHHhhhccchhHHHHhHHHHH-HhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHH
Q 014286          224 HFRVVFIGSTLFALQQLSGINAIFYFSSSVF-KSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSM  299 (427)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~  299 (427)
                      .++...+..++.......   ...+..+++. +..|.++.   .......++.++++++++++.||+++|+++..+..+.
T Consensus       259 ~~~~~~l~~~~~~~~~~~---~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~  335 (438)
T PRK10133        259 HWRWAVLAQFCYVGAQTA---CWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIA  335 (438)
T ss_pred             hHHHHHHHHHHHHHHHHH---HHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence            776554444443332221   1222233433 35688776   5667888899999999999999999999888877666


Q ss_pred             HHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 014286          300 AVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLR  379 (427)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~  379 (427)
                      .+...+..+..      .   ......+.+.+++.+.. .|...+...+..|+ +.+++.++.. ...+|+.++|.+.|.
T Consensus       336 ~~~~~~~~~~~------~---~~~~~~~~l~glg~~~i-~P~~~s~a~~~~~~-~~~~as~l~~-~~~~g~~~~~~i~G~  403 (438)
T PRK10133        336 MALCLISAFAG------G---HVGLIALTLCSAFMSIQ-YPTIFSLGIKNLGQ-DTKYGSSFIV-MTIIGGGIVTPVMGF  403 (438)
T ss_pred             HHHHHHHHHcC------C---hHHHHHHHHHHHHHHHH-HHHHHHHHHcccch-hhccchhHHh-HHhccchHHHHHHHH
Confidence            55544433321      1   11233344455555544 45555577787774 5678888876 455789999999999


Q ss_pred             HHHHhc-cchhHHHHHHHHHHHHHH
Q 014286          380 LLEQLG-PQLLYSIFGTFCLMAVAF  403 (427)
Q Consensus       380 l~~~~g-~~~~~~~~~~~~~~~~~~  403 (427)
                      +.|..| .+..|++...+.+...+.
T Consensus       404 l~~~~g~~~~~~~v~~~~~~~~~~~  428 (438)
T PRK10133        404 VSDAAGNIPTAELIPALCFAVIFIF  428 (438)
T ss_pred             HHHhccchHHHHHHHHHHHHHHHHH
Confidence            999887 677776555444444333

>TIGR00897 2A0118 polyol permease family

Probab=99.94  E-value=5.3e-25  Score=203.40  Aligned_cols=322  Identities=14%  Similarity=0.088  Sum_probs=198.8

Q ss_pred             cccchhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHhhHHHHHHHHHHH---h-hhhhHHH
Q 014286           69 VVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISA---T-TRNLIGM  144 (427)
Q Consensus        69 ~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~---~-~~~~~~l  144 (427)
                      ...+.++.+.+|+|.+.++.  |++.+.+.+++.++++++|+++||+|||+++..+.++++++++++.   + .++++.+
T Consensus        31 ~~~~~~~~~~~~~g~s~~~~--g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l  108 (402)
T TIGR00897        31 LEQGWLSPFLKALGLSPQQS--ASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLI  108 (402)
T ss_pred             hHHHhHHHHHHHhCCCHHHh--HHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHH
Confidence            33445667778899866655  9999999999999999999999999999999999999999887653   3 3578889


Q ss_pred             HHHHHHHhhhccccccceeecccCCchhhhhcCChHHHHHH-----------HHHH-----hCCCchh---h--------
Q 014286          145 LLGRFVVGTGMGLGPTVAALYVTESPHWLYKKGRTAEAEAE-----------FEKL-----LGGSHVK---S--------  197 (427)
Q Consensus       145 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-----------~~~~-----~~~~~~~---~--------  197 (427)
                      ++.|+++|++.+...+....++.+.    ..+++...+...           ....     .......   .        
T Consensus       109 ~~~~~i~G~g~~~~~~~~~~~~~~~----~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~  184 (402)
T TIGR00897       109 LLFYGIRGLGYPLFAYSFLVWVVYN----TKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFVLT  184 (402)
T ss_pred             HHHHHHHHcchHHHHhHHHHHHHHh----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence            9999999999877655544444431    011111111100           0000     0000000   0        


Q ss_pred             --H-----HHHHhhhhcC-CCCC----cchhHhhhcccchhHHHHHHHHHHhhhccchhHHHHhHHHHHHhcCCChh---
Q 014286          198 --S-----LAELSKLDRG-DDGD----IVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSG---  262 (427)
Q Consensus       198 --~-----~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---  262 (427)
                        .     .++.++.+++ ++.+    ...+++++++|..+...+..++...    .......+.|.+.++.|.+..   
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~p~~~~~~g~s~~~~~  260 (402)
T TIGR00897       185 GGVIALFSNKDIFTPQHMQTREKFSELGKAATILFTNPNVLLGGMVRIINTI----GLFGFAVFLPMFVAELGFSTSEWL  260 (402)
T ss_pred             HHHHHHhccCCCCCcccccCCcchhhHHHHHHHHHcChhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHcCCChhHHH
Confidence              0     0000000000 0001    1123456667666554443333222    233344566777777888766   


Q ss_pred             HHHHHHHHHHHHHHHhHhhhhcccCccchhh-hhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcccch
Q 014286          263 LANVFVGIANLLGSVVAMVLMDKLGRKALLQ-WSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPV  341 (427)
Q Consensus       263 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (427)
                      .......++..++.+..|+++||++||+.+. .+.....++...+.......   ....+.......+.+.+.+. ..+.
T Consensus       261 ~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~G~~~~~-~~~~  336 (402)
T TIGR00897       261 QIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHF---GHSFAVALIIAIALGIFLAG-YVPL  336 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHcc---CCcHHHHHHHHHHHHHHHHH-HHHH
Confidence            3445667888999999999999999887664 23333333322222222110   11122233333334433332 2343


Q ss_pred             hhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHH
Q 014286          342 PSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKR  406 (427)
Q Consensus       342 ~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  406 (427)
                      .. ...|..| ++||++.|+.+...++++.++|.+.|.+.+..|+...+++.+++.+++.++..+
T Consensus       337 ~~-~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~  399 (402)
T TIGR00897       337 AA-VFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAF  399 (402)
T ss_pred             HH-HHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence            33 5667655 689999999999999999999999999999999999999888887777666543

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.94  E-value=2.8e-25  Score=192.75  Aligned_cols=343  Identities=15%  Similarity=0.137  Sum_probs=238.1

Q ss_pred             HHHHHHhhhhhccccccccchhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHhhHHHHHHH
Q 014286           53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGA  132 (427)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~  132 (427)
                      +.+..++.....+...+.+++.+.+.+|+|+|.+|.  +++.++..+..++..++.|.+.||||.|++..++.++..+-+
T Consensus        16 L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~--~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~   93 (417)
T COG2223          16 LWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQK--GLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPC   93 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHH--HHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHH
Confidence            334444444444555677888889999999987777  999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhH---HHHHHHHHHhhhccccccceeecccCCchhhhhcCChHHHHHHHHHHhCC----------------C
Q 014286          133 SISATTRNLI---GMLLGRFVVGTGMGLGPTVAALYVTESPHWLYKKGRTAEAEAEFEKLLGG----------------S  193 (427)
Q Consensus       133 ~~~~~~~~~~---~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~  193 (427)
                      +..+++.+++   ++++++++.|++.+ .+.....+++.    ++++++...+..+.. ....                .
T Consensus        94 ~~~~~a~~~~~~~~ll~~gll~G~~Ga-sFav~m~~~s~----~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g  167 (417)
T COG2223          94 LGLAFAVTYPSTWQLLVIGLLLGLAGA-SFAVGMPNASF----FFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFG  167 (417)
T ss_pred             HHHHHHccCCchHHHHHHHHHHhcccc-eehcccccccc----cCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHh
Confidence            9999986555   99999999999755 44455555554    333333333332221 0000                0


Q ss_pred             c--hh------------------hHHHHHhhhhcCCCCCc-chhHhhhcccchhHHHHHHHHHHhhhccchhHHHHhHH-
Q 014286          194 H--VK------------------SSLAELSKLDRGDDGDI-VKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSS-  251 (427)
Q Consensus       194 ~--~~------------------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  251 (427)
                      .  ..                  ...++.++.....++.. ..++.++++++.|.+.+.+...+...    ..+..++| 
T Consensus       168 ~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~~~~~~~v~~~~~~W~lsllY~~tFG~F----vgfs~~l~~  243 (417)
T COG2223         168 FLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQLPAQLKAVFSNKDTWLLSLLYFATFGGF----VGFSAYLPM  243 (417)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccccchhHHHHHhcCcchHHHHHHHHHHHHHH----HHHHHHHHH
Confidence            0  00                  00011111111111112 45677888888888777766665533    33333333 


Q ss_pred             HHHHhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHH
Q 014286          252 SVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGML  328 (427)
Q Consensus       252 ~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (427)
                      ++.+++|.+..   .......+.+.+.++++|+++||+|.++++...+..++++..++........ ...+.+..+...+
T Consensus       244 ~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~l  322 (417)
T COG2223         244 YLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFG-HGGSFVVFVAVFL  322 (417)
T ss_pred             HHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccc-cCcchHHHHHHHH
Confidence            44456777655   4566666777788999999999999999999988888888877766542211 1233344445455


Q ss_pred             HHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHHHHHHh
Q 014286          329 MFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLG-PQLLYSIFGTFCLMAVAFVKRN  407 (427)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~  407 (427)
                      ......+.+...+.. ++..++| ++.|.+.|+...++.+|+..-|...|...+.+| +...|+++..+.+++.++.+..
T Consensus       323 ~l~~~~G~GnGsvfk-~Ip~if~-~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~  400 (417)
T COG2223         323 ALFVFAGLGNGSVFK-MIPVIFP-KETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWAL  400 (417)
T ss_pred             HHHHHhccCcchhee-echHHHH-hhhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            556666666666666 8888887 568999999999999999999999999999999 7888888888888887766554


Q ss_pred             ccC
Q 014286          408 VVE  410 (427)
Q Consensus       408 ~~~  410 (427)
                      ..+
T Consensus       401 y~r  403 (417)
T COG2223         401 YAR  403 (417)
T ss_pred             HHh
Confidence            443

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.94  E-value=3.2e-25  Score=208.57  Aligned_cols=335  Identities=13%  Similarity=0.054  Sum_probs=190.0

Q ss_pred             HHHHHHhhhhhccccccccchhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHhhHHHHHHH
Q 014286           53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGA  132 (427)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~  132 (427)
                      +.......+...++.....+.+|.+.+++|++.++.  +++.+.+.+++.+++++.|+++||+|||+++..+.++++++.
T Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~--g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~  115 (476)
T PLN00028         38 FHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSDI--GNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAV  115 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence            333334444444455566788999999999876655  899999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhHHHHHHHHHHhhhccccccceeecccCCchhhhhcCChHHHHHHH---------------HHH----hCC-
Q 014286          133 SISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTESPHWLYKKGRTAEAEAEF---------------EKL----LGG-  192 (427)
Q Consensus       133 ~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~---------------~~~----~~~-  192 (427)
                      +++++++|++.++++|+++|++.+...+ ...++.|   |+.. ++...+....               ..+    ... 
T Consensus       116 ~~~~~~~s~~~l~~~r~l~G~~~~~~~~-~~~~i~~---~~~~-~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~  190 (476)
T PLN00028        116 FCMSLVSSATGFIAVRFFIGFSLATFVS-CQYWMST---MFNG-KIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAG  190 (476)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHHhhHH-HHHHHHH---hcCh-hheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999998875433 3333332   1111 1110000000               000    000 


Q ss_pred             -----Cch---------------h-hHH-HHHh-----hhhcCCCCC----cchhHhhhcccchhHHHHHHHHHHhhhcc
Q 014286          193 -----SHV---------------K-SSL-AELS-----KLDRGDDGD----IVKFEELLYGRHFRVVFIGSTLFALQQLS  241 (427)
Q Consensus       193 -----~~~---------------~-~~~-~~~~-----~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (427)
                           .+.               . ... ++.+     +.+++.+.+    ...+++.++++..+...+..+.....   
T Consensus       191 ~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  267 (476)
T PLN00028        191 APSFTAWRIAFFVPGLLHIIMGILVLTLGQDLPDGNYRELKKSGTMPKDSFSKVLRYGVTNYRTWILALTYGYSFGV---  267 (476)
T ss_pred             CcchhhhHHHHHHHHHHHHHHHHHHHHHcCcCCCCchhhHHhcCccccccHHHHHHHHHcCchhHHHHHHHHHHHHH---
Confidence                 000               0 000 0000     000000001    11234445555555444333222221   


Q ss_pred             chhHHHHhHHH-HHHhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccch----hhhhhHHHHHHHHHHHHHhhcC
Q 014286          242 GINAIFYFSSS-VFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKAL----LQWSFFSMAVSMAIQVAASSSY  313 (427)
Q Consensus       242 ~~~~~~~~~~~-~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~----~~~~~~~~~~~~~~~~~~~~~~  313 (427)
                       ......+.|. +.+..|.+..   ....+..++.+++++++|+++||++||+.    .........+..+.+.....  
T Consensus       268 -~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~--  344 (476)
T PLN00028        268 -ELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGR--  344 (476)
T ss_pred             -HHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcc--
Confidence             1222333443 3455688765   56666778889999999999999986521    11111111111111111110  


Q ss_pred             CCCCchhHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHH
Q 014286          314 IPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIF  393 (427)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~  393 (427)
                         ..+.+.....+++++.+..... +..+.+..+..| +++|++.|+.+..+++|+.++|.+.+ ..+..+|...|.+.
T Consensus       345 ---~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~  418 (476)
T PLN00028        345 ---ANSLGAAIVVMILFSIFVQAAC-GATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLM  418 (476)
T ss_pred             ---cchHHHHHHHHHHHHHHHHHhh-hhhcccCcccCh-hhchhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHH
Confidence               1111222223333333332222 223335666655 78999999998887778877777654 11223588888888


Q ss_pred             HHHHHHHHHHHHH
Q 014286          394 GTFCLMAVAFVKR  406 (427)
Q Consensus       394 ~~~~~~~~~~~~~  406 (427)
                      +++.+++.++.++
T Consensus       419 ~~~~~i~~~~~~~  431 (476)
T PLN00028        419 GVMIIACTLPVAF  431 (476)
T ss_pred             HHHHHHHHHHHHh
Confidence            8777777665543

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.94  E-value=4.4e-24  Score=203.96  Aligned_cols=349  Identities=21%  Similarity=0.188  Sum_probs=240.2

Q ss_pred             HHhhhhhccccccccchhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHhhHHHHHHHHHHH
Q 014286           57 TLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISA  136 (427)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~  136 (427)
                      +........+....++..+  .+.+..  +.....+..+++++|..+|++++|+++||+|||++++.++++..++.++++
T Consensus        91 ~~~~~~~~~~~~~~s~~~~--~~~~c~--~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a  166 (521)
T KOG0255|consen   91 CLDGWVYDYGSSVYSIVSE--WNLVCD--SSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTA  166 (521)
T ss_pred             ccceeEecCCCCcccccch--hceeeC--cHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHH
Confidence            3333333344444444433  234443  444448899999999999999999999999999999999999999999999


Q ss_pred             hhhhhHHHHHHHHHHhhhccccccceeeccc-------------------------------------------------
Q 014286          137 TTRNLIGMLLGRFVVGTGMGLGPTVAALYVT-------------------------------------------------  167 (427)
Q Consensus       137 ~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~-------------------------------------------------  167 (427)
                      +++|++.+++.|+++|++.++....+..++.                                                 
T Consensus       167 ~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~~~~~~~~~a~~~~~Wr~~~~~~~~~~~~  246 (521)
T KOG0255|consen  167 FAPNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTLGGFFFVGGLMLPAGAAYITRDWRWLFWIISIPSGL  246 (521)
T ss_pred             HhCcHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            9999999999999999999877776666654                                                 


Q ss_pred             ---------CCchhhhhcCChHHHHHHHHHHhCCC---chh-hHHHHH---hhhhcCCCCCcchhHhhhcccchhHHHHH
Q 014286          168 ---------ESPHWLYKKGRTAEAEAEFEKLLGGS---HVK-SSLAEL---SKLDRGDDGDIVKFEELLYGRHFRVVFIG  231 (427)
Q Consensus       168 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (427)
                               |+|||+..+++.+++...+......+   ... ......   ++......+++..+.++++.++.+...+.
T Consensus       247 ~~~~~~l~~Es~rwl~~~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~  326 (521)
T KOG0255|consen  247 FLLLWFLPPESPRWLLSKGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLY  326 (521)
T ss_pred             HHHHHHccCcChHHHHHcCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHH
Confidence                     89999999999988888877765432   111 111111   11111112233457788887754433333


Q ss_pred             HHHHHhhhccchhHHHHhHHHHHHhcCCChhHHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhh
Q 014286          232 STLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASS  311 (427)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~  311 (427)
                      ..+...    ......+-........|.+........+.....+....+...|+.|||.....+..+..++.+...+...
T Consensus       327 ~~~~~~----~~~~~y~gl~~~~~~lg~~~~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~  402 (521)
T KOG0255|consen  327 LLFIWF----VFSLVYYGLSLNVSGLGGNIYLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPD  402 (521)
T ss_pred             HHHHHH----HHhHHHHhhhhhhhhcCchHHHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhc
Confidence            322221    1222222334444556777777777777778888888899999999999999999999999888887664


Q ss_pred             cCCCCCchhHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHH
Q 014286          312 SYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYS  391 (427)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~  391 (427)
                      ..    .. +.......+...+.+.++... ..+..|.+|+..|..+.+.......++++++|.+...... ......+.
T Consensus       403 ~~----~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~-~~~~~~~~  475 (521)
T KOG0255|consen  403 DL----GG-WLHWILPLLGKFFIGSAFNLI-FLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQ-MFPLLGLI  475 (521)
T ss_pred             cc----hh-HHHHHHHHHHHHHHHHHHHHH-HHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcccchHH
Confidence            32    10 122223333333333344444 5599999999999999999999999999999988765444 33333444


Q ss_pred             HHHHHHHHHHHHHHHhccCCCCCCHHHHH
Q 014286          392 IFGTFCLMAVAFVKRNVVETKGKSLQEIE  420 (427)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (427)
                      +++....+..++...+.||++++.+.+..
T Consensus       476 ~~~~~~~l~~~~~~~~lpet~~~~l~~t~  504 (521)
T KOG0255|consen  476 LFGWLALLLGLLSLLLLPETKGKPLPGTL  504 (521)
T ss_pred             HHHHHHHHHHHHHHhcCcccCCCCCchhH
Confidence            45666677777777889999988765543

>TIGR00889 2A0110 nucleoside transporter

Probab=99.93  E-value=1.9e-24  Score=199.88  Aligned_cols=343  Identities=14%  Similarity=0.110  Sum_probs=213.8

Q ss_pred             hhhhcccccccc-chhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccch-hHHHHHhhHHHHHHHHHHHh
Q 014286           60 SFLFGYHLGVVN-EPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGR-RRAFQLCALPMIIGASISAT  137 (427)
Q Consensus        60 ~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Gr-r~~l~~~~~~~~~~~~~~~~  137 (427)
                      .+......+... +..+.+.+++|++.++.  |++.+++.++..++++++|.++||+|| |+++.++.++.++++.++.+
T Consensus        11 ~~~~~~~~~~~~~~l~~~l~~~~g~s~~~i--Gl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~   88 (418)
T TIGR00889        11 SFLQWFIWGSWLVTLGSYMSKTLHFSGAEI--GWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQ   88 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            344444444443 44456677889876655  999999999999999999999999965 77889889999899999999


Q ss_pred             hhhhHHHHHHHHHHhhhccccccceeecc----c----CCchhhhhcCChHHHHHH----HHHHhCCCc--hh-------
Q 014286          138 TRNLIGMLLGRFVVGTGMGLGPTVAALYV----T----ESPHWLYKKGRTAEAEAE----FEKLLGGSH--VK-------  196 (427)
Q Consensus       138 ~~~~~~l~~~r~l~G~~~g~~~~~~~~~i----~----~~~~~~~~~~~~~~~~~~----~~~~~~~~~--~~-------  196 (427)
                      .++++.+++.|++.|++.+...+...++.    .    |..+.+...+........    +........  ..       
T Consensus        89 ~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G~lG~~ig~~l~g~l~~~~~~~~f~~~~~~  168 (418)
T TIGR00889        89 VTTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMGTIGFIAAMWAVSLLDIELSNIQLYITAGS  168 (418)
T ss_pred             hcCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeehhHHHHHHHHHHHHhcccchhHHHHHHHHH
Confidence            99999999999999998766655443331    1    111111000000000000    000000000  00       


Q ss_pred             ----hHH-HHHhhhhcCCC---CC-----cchhHhhhcccchhHHHHHHHHHHhhhccchhHHHHhHHHHHHhcCCCh--
Q 014286          197 ----SSL-AELSKLDRGDD---GD-----IVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSS--  261 (427)
Q Consensus       197 ----~~~-~~~~~~~~~~~---~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--  261 (427)
                          ... ...++.++.++   .+     +.+.++++|++.++..++..++....    ......+.+.+.++.|.++  
T Consensus       169 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~~~  244 (418)
T TIGR00889       169 SALLGVFALTLPDIPVAKSTAKMSIKVMLGLDAFILFKNKRMAIFFFFSMLLGAP----LQITNIFGNGFLHEFGRNPEF  244 (418)
T ss_pred             HHHHHHHHhcCCCCCCCccccccCHHHHhhhhHHHHhcCCCeeeHHHHHHHHHhH----HHHHHHhHHHHHHHhcccccc
Confidence                000 00011100000   00     01234567777766555554443321    1222233444445545332  


Q ss_pred             ---------hHHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHH
Q 014286          262 ---------GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVL  332 (427)
Q Consensus       262 ---------~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (427)
                               +.......+..+++.+..++++||+|+|+.+..+.++.+++..++.....    .....+..++..++.+.
T Consensus       245 ~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~----~~~~~~~l~l~~~l~g~  320 (418)
T TIGR00889       245 ADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDP----EYFGYALLFLSMIVYGC  320 (418)
T ss_pred             cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCc----chhhHHHHHHHHHHHHH
Confidence                     25556666778888999999999999999999998888777655544211    01111223333444444


Q ss_pred             HHhhcccchhhhhccCcCCccchhhHHHHHH-HHHHHHHHHHHHHHHHHHHHh------ccchhHHHHHHHHHHHHHHHH
Q 014286          333 TFALGAGPVPSLLLPEIFPSRIRAKAMAVCM-SVHWVINFFVGLLFLRLLEQL------GPQLLYSIFGTFCLMAVAFVK  405 (427)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~-~~~~~g~~~~~~~~g~l~~~~------g~~~~~~~~~~~~~~~~~~~~  405 (427)
                      +.+.. .+....++.|.+|++.|+++.|+.+ ....+|.+++|.+.|.+.|+.      ||+..|.+.+++.++..++.+
T Consensus       321 ~~~~~-~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~  399 (418)
T TIGR00889       321 AFDFF-NISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFM  399 (418)
T ss_pred             HHHHH-HHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHH
Confidence            44432 3444458899999999999999997 567899999999999999985      578888888888888888777


Q ss_pred             HhccCCCC
Q 014286          406 RNVVETKG  413 (427)
Q Consensus       406 ~~~~~~~~  413 (427)
                      ++.+|+++
T Consensus       400 ~~~~~~~~  407 (418)
T TIGR00889       400 IFFKYSHN  407 (418)
T ss_pred             HHhCCccc
Confidence            77776654

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK11043 putative transporter; Provisional

Probab=99.93  E-value=5.9e-24  Score=196.79  Aligned_cols=314  Identities=20%  Similarity=0.186  Sum_probs=196.0

Q ss_pred             hhhhccccccccchhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHhhHHHHHHHHHHHhhh
Q 014286           60 SFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTR  139 (427)
Q Consensus        60 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~  139 (427)
                      .....+....+.|.+|.+.+++|.+.++.  |++.+++.++..++++++|+++||+|||+++..+.++.+++.+++++++
T Consensus        15 ~~~~~~~~~~~~p~~~~i~~~~~~s~~~~--g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~   92 (401)
T PRK11043         15 SMLGFLATDMYLPAFKAIQADLQTSASAV--SASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVE   92 (401)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHCCCHHHH--HHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhc
Confidence            33344566778889999999999866655  9999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHhhhccccccceeecccCCchhhhhcCChHHHHHHH----------HH-----HhCCCchhh-------
Q 014286          140 NLIGMLLGRFVVGTGMGLGPTVAALYVTESPHWLYKKGRTAEAEAEF----------EK-----LLGGSHVKS-------  197 (427)
Q Consensus       140 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~----------~~-----~~~~~~~~~-------  197 (427)
                      +++.+++.|+++|++.+...+....++.|.    ..+++........          ..     +......+.       
T Consensus        93 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~  168 (401)
T PRK11043         93 SAAQLLVLRFVQAVGVCSAAVIWQALVIDR----YPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFA  168 (401)
T ss_pred             CHHHHHHHHHHHHhhhHHHHHHHHHHHHHh----cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence            999999999999999877666555555541    1111111111100          00     000000000       


Q ss_pred             -------HHHHHhhhhc--CCCCCcchhHhhhcccchhHHHHHHHHHHhhhccchhHHHHhHHHHHHhcCCChh---HHH
Q 014286          198 -------SLAELSKLDR--GDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSG---LAN  265 (427)
Q Consensus       198 -------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~  265 (427)
                             ......+.++  ++++++.++++.++++..+...+.......    .......+.|.+.++.|.+..   ...
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~p~~~~~~g~s~~~~g~~~  244 (401)
T PRK11043        169 ITLLLILPTLRLKPSKKARKQSQDALTFKQLLKSKTYLGNVLIFAACSA----AFFAWLTGSPFILEQMGYSPADIGLSY  244 (401)
T ss_pred             HHHHHHHHHHHcCCCCCccccchHHHHHHHHHcChhHHHHHHHHHHHHH----HHHHHHHHhHHHHHHcCCCHHHHHHHH
Confidence                   0000111111  111223356677777766544333322222    122233445666677788766   334


Q ss_pred             HHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcccchhhhh
Q 014286          266 VFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLL  345 (427)
Q Consensus       266 ~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (427)
                      ....++..++.++.+++.||+++|+.........+++.+.+.......   ....+.......+.+.+.+. ..+.....
T Consensus       245 ~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  320 (401)
T PRK11043        245 VPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLS---HPSLVPLLIPFCVMAAANGA-IYPIVVAQ  320 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhc---cCcHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            455667788889999999999998876665555554444333222111   11122222233333333332 33444445


Q ss_pred             ccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Q 014286          346 LPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQL  388 (427)
Q Consensus       346 ~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~  388 (427)
                      ..|..| +++|++.|+.+.....++..++.+.|.+.+......
T Consensus       321 ~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~  362 (401)
T PRK11043        321 ALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALISTPLLTT  362 (401)
T ss_pred             HhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCCChhHH
Confidence            566666 679999999999999999999999999877544433

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.93  E-value=6.8e-25  Score=208.52  Aligned_cols=318  Identities=18%  Similarity=0.195  Sum_probs=213.3

Q ss_pred             HHHHHHHhhhhhccccccccchhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHhhHHHHHH
Q 014286           52 HVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIG  131 (427)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~  131 (427)
                      .+..++++.+...++....++.+|.+.+++|.+.++.  +++.+.+.++..++.++.|+++||+|||++++.+.+++.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~   80 (485)
T TIGR00711         3 LTIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQV--QWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLG   80 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhh--hHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHH
Confidence            4566777888888999999999999999999876666  99999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhHHHHHHHHHHhhhccccccceeecccCCchhhhhcCChHHHHHHHH------H-----------------
Q 014286          132 ASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTESPHWLYKKGRTAEAEAEFE------K-----------------  188 (427)
Q Consensus       132 ~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~------~-----------------  188 (427)
                      ++++++++|++.++++|+++|++.+...+....++.|..    .++++..+.....      .                 
T Consensus        81 ~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~----~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~  156 (485)
T TIGR00711        81 SLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIY----PPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWR  156 (485)
T ss_pred             HHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCce
Confidence            999999999999999999999999988887777776421    1111111100000      0                 


Q ss_pred             ------------------HhCCCchhhHHHH-------------------Hhhhhc------------------------
Q 014286          189 ------------------LLGGSHVKSSLAE-------------------LSKLDR------------------------  207 (427)
Q Consensus       189 ------------------~~~~~~~~~~~~~-------------------~~~~~~------------------------  207 (427)
                                        .......+...++                   ..+.++                        
T Consensus       157 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (485)
T TIGR00711       157 WIFLINVPIGIIVVVVAFFILPRDKPAASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFV  236 (485)
T ss_pred             ehhhhhhHHHHHHHHHHHHHcCCccccccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHH
Confidence                              0000000000000                   000000                        


Q ss_pred             ---CCCCCcchhHhhhcccchhHHHHHHHHHHhhhccchhHHHHhHHHHH-HhcCCChh---HHHHHHHHHHHHHHHhHh
Q 014286          208 ---GDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVF-KSAGLSSG---LANVFVGIANLLGSVVAM  280 (427)
Q Consensus       208 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~---~~~~~~~~~~~~~~~~~g  280 (427)
                         .+++++....+.++++.++...+..++....    .....++.|.+. +..|.++.   ....+..++.+++.++.|
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g  312 (485)
T TIGR00711       237 VWELTDDNPLVDLRLFKYRNFTIGCVYMSLLGLG----LYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAG  312 (485)
T ss_pred             HHHHcCCCCccCHHHHcCCChHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence               0000001112355666655544444333332    222334455444 44677765   566667788889999999


Q ss_pred             hhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHH
Q 014286          281 VLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMA  360 (427)
Q Consensus       281 ~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g  360 (427)
                      ++.||++||+.+..+..+.+++..++.....    .+...+.......+.+.+.+....+... ...+..|+++++++.|
T Consensus       313 ~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~g~g~~~~~~~~~~-~~~~~~~~~~~g~~~~  387 (485)
T TIGR00711       313 RMGDKIDPRKLVTIGLILYAVGFYWRAFTFT----PDTPFLAIALPQFIRGFGMGCFFMPLTT-IALSGLPPHKIARGSS  387 (485)
T ss_pred             HHHhhcCcHHHHHHHHHHHHHHHHHHhccCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCHHHHhHHHH
Confidence            9999999999988887777766665542111    1222233333444455555444445444 5567779999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh
Q 014286          361 VCMSVHWVINFFVGLLFLRLLEQL  384 (427)
Q Consensus       361 ~~~~~~~~g~~~~~~~~g~l~~~~  384 (427)
                      +.+..+.+|+.+++.+.+.+.++.
T Consensus       388 ~~~~~~~~g~~ig~~i~g~~~~~~  411 (485)
T TIGR00711       388 LSNFTRQLGGSIGTALITTILTNR  411 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999998753

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00895 2A0115 benzoate transport

Probab=99.93  E-value=7e-24  Score=196.39  Aligned_cols=320  Identities=19%  Similarity=0.217  Sum_probs=200.9

Q ss_pred             HHHHHHHHHHhhhhhccccccccchhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHhhHHH
Q 014286           49 SFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPM  128 (427)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~  128 (427)
                      .+..+...++..+..+++.....+..|.+.+++|.+..+.  |++.+.+.++..+++++.|+++||+|||+++..+.++.
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~   92 (398)
T TIGR00895        15 QWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQL--GFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLF   92 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHH--HHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHH
Confidence            3445566666677777777778888999999999865555  99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHhhhccccccceeecccCCch---------------------------hhhhcCChHH
Q 014286          129 IIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTESPH---------------------------WLYKKGRTAE  181 (427)
Q Consensus       129 ~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~---------------------------~~~~~~~~~~  181 (427)
                      +++.+++.++++++.+++.|++.|++.+...+....++.|...                           ++.....+..
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~  172 (398)
T TIGR00895        93 SVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRS  172 (398)
T ss_pred             HHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhccccee
Confidence            9999999999999999999999999999888888777775210                           0000000000


Q ss_pred             H------HHH----HHHHhCCCchh---hH-HHH-------Hhhh--------hcCCCC----CcchhHhhhcccchhHH
Q 014286          182 A------EAE----FEKLLGGSHVK---SS-LAE-------LSKL--------DRGDDG----DIVKFEELLYGRHFRVV  228 (427)
Q Consensus       182 ~------~~~----~~~~~~~~~~~---~~-~~~-------~~~~--------~~~~~~----~~~~~~~~~~~~~~~~~  228 (427)
                      .      ...    +..........   .. .++       ..+.        .++++.    .+...+..++++..+..
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (398)
T TIGR00895       173 LFYVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFKALFQGKTARIT  252 (398)
T ss_pred             ehhhhhhHHHHHHHHHHHhCCCCChHHHhcCHHHHHHHHHHHHHhccccccccccccccccchhhHHHHHHhcchhHHHH
Confidence            0      000    00000000000   00 000       0000        000000    01112223333333322


Q ss_pred             HHHHHHHHhhhccchhHHHHhHHHHHHhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHH
Q 014286          229 FIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAI  305 (427)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~  305 (427)
                      ........+ ..........+.|++.++.+.+..   .......++.+++.++.+++.||+++|+... ...+..+...+
T Consensus       253 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~  330 (398)
T TIGR00895       253 VLLWLLYFM-LLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTAL-LLLLGAVFAVL  330 (398)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHH-HHHHHHHHHHH
Confidence            222222222 222344445566777777887765   4566677888999999999999999984443 33333333333


Q ss_pred             HHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 014286          306 QVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRL  380 (427)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l  380 (427)
                      +.....       ..+......++.+.+.+.. .+...++..|.+|+++|+++.|+.+.+.++|..++|.+.|.+
T Consensus       331 ~~~~~~-------~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       331 VGSTLF-------SPTLLLLLGAIAGFFVNGG-QSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHhh-------CHHHHHHHHHHHHHHHHHH-HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence            222111       1122333344444444333 445566899999999999999999999999999999999875

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.93  E-value=1.8e-24  Score=199.48  Aligned_cols=312  Identities=20%  Similarity=0.176  Sum_probs=198.7

Q ss_pred             HHHhhhhhccccccccchhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHhhHHHHHHHHHH
Q 014286           56 ATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASIS  135 (427)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~  135 (427)
                      +.+..+....+.....|.+|.+.+++|.+.++.  |++.+.+.++..++++++|+++||+|||+++..+.++.+++.+++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~   87 (385)
T TIGR00710        10 LGCLSILGPLGIDMYLPAFPEIAADLSTPASIV--QMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGL   87 (385)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHH
Confidence            333345556677788899999999999876665  999999999999999999999999999999999999999999999


Q ss_pred             HhhhhhHHHHHHHHHHhhhccccccceeecccCCchhhhhcCChHHHHHHHHHH------hC----------CCchh---
Q 014286          136 ATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTESPHWLYKKGRTAEAEAEFEKL------LG----------GSHVK---  196 (427)
Q Consensus       136 ~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~------~~----------~~~~~---  196 (427)
                      +++++++.+++.|+++|++.+...+....++.|.    ..+++...........      .+          .....   
T Consensus        88 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~  163 (385)
T TIGR00710        88 ALSNNIETLLVLRFVQAFGASAGSVISQALVRDI----YPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFA  163 (385)
T ss_pred             HHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHh----cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence            9999999999999999999999888888777762    1111111111110000      00          00000   


Q ss_pred             -----------hHHHHHhhhhcCCC-----CCcchhHhhhcccchhHHHHHHHHHHhhhccchhHHHHhHHHH-HHhcCC
Q 014286          197 -----------SSLAELSKLDRGDD-----GDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSV-FKSAGL  259 (427)
Q Consensus       197 -----------~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~  259 (427)
                                 ......++.+++++     +....+++.++++..+...+.......    .......+.|.+ .+..|.
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~  239 (385)
T TIGR00710       164 FLSLAGILLSALIFFILPETLPYEARIQISTYFETFLLLLKSKMFWGYALIYGASFG----GFFAFFSGAPFVYIDIMGV  239 (385)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCCcccCCHHHHHHHHHHHHcCchhHHHHHHHHHHHH----HHHHHHHcChHHHHHHcCC
Confidence                       00000011111111     111234556667666654443333222    122222333433 346777


Q ss_pred             Chh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhh
Q 014286          260 SSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFAL  336 (427)
Q Consensus       260 ~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (427)
                      ++.   .......++.+++.++.+++.||+++|+.+..+..+..++..++.......   ............+.+.+.+.
T Consensus       240 ~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~  316 (385)
T TIGR00710       240 SPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILG---LGSWAMIIGPMMFVGIGNSM  316 (385)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhc---cchHHHHHHHHHHHHHHHHH
Confidence            765   455667788889999999999999999988888777776666555432211   11112222223333333333


Q ss_pred             cccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014286          337 GAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLE  382 (427)
Q Consensus       337 ~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~  382 (427)
                      . .+.......|..| ++++++.++.+...+.++.+.+.+.+.+.+
T Consensus       317 ~-~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~~~~~  360 (385)
T TIGR00710       317 I-SSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVSLIHG  360 (385)
T ss_pred             H-HHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            2 3344446677777 679999999999988777777777774433

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.93  E-value=2.2e-24  Score=201.45  Aligned_cols=348  Identities=11%  Similarity=0.049  Sum_probs=207.7

Q ss_pred             HHHHHHHHHHhhhhhccccccccchhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHhhHHH
Q 014286           49 SFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPM  128 (427)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~  128 (427)
                      .+..+....+.+...+.++..+....|.+++ +|++.++.  |++.+++.++..+++++.|+++||+|||+++..+.++.
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~--g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~  101 (438)
T TIGR00712        25 RWQVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGEL--GFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILS  101 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHh--HHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHH
Confidence            3445556666666676777767777787775 58766655  99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhh----hhhHHHHHHHHHHhhhccccccceeecccCCchhhhhcCChHHHHHHHHH---------------H
Q 014286          129 IIGASISATT----RNLIGMLLGRFVVGTGMGLGPTVAALYVTESPHWLYKKGRTAEAEAEFEK---------------L  189 (427)
Q Consensus       129 ~~~~~~~~~~----~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---------------~  189 (427)
                      +++.+++++.    ++++.+.+.|++.|++.|...+.....+.|.    ..+++...+......               .
T Consensus       102 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~----~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~  177 (438)
T TIGR00712       102 AAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHW----WSQSERGTIVSIWNCAHNIGGGIPPLLVLLG  177 (438)
T ss_pred             HHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHh----cCcccchhHHHHHHHHHHhHhHHHHHHHHHH
Confidence            9999888764    4677888999999999988777665554431    111111111000000               0


Q ss_pred             h----C-------------------CCchhhHHHHH-----hhhhc-------CCCCCcchh-----HhhhcccchhHHH
Q 014286          190 L----G-------------------GSHVKSSLAEL-----SKLDR-------GDDGDIVKF-----EELLYGRHFRVVF  229 (427)
Q Consensus       190 ~----~-------------------~~~~~~~~~~~-----~~~~~-------~~~~~~~~~-----~~~~~~~~~~~~~  229 (427)
                      .    +                   ....++..++.     ++.++       ++++.+.+.     +..++++..+...
T Consensus       178 ~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (438)
T TIGR00712       178 MAWFNDWHAALYFPAICAIIVALFAFAMMRDTPQSCGLPPIEEYRNDYPDDYNEKAEQELTAKEIFMQYVLPNKLLWYIA  257 (438)
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCCchhcccccccccccccccccchHHHHHHHHccCchHHHHH
Confidence            0    0                   00000000000     00000       000000111     1245566555544


Q ss_pred             HHHHHHHhhhccchhHHHHhHHHHHHh-cCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHH
Q 014286          230 IGSTLFALQQLSGINAIFYFSSSVFKS-AGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAI  305 (427)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~  305 (427)
                      +...+...    .......+.|.+.++ .|.+..   +...+..+..+++.+++|+++||+++++....+.....+..+.
T Consensus       258 ~~~~~~~~----~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~  333 (438)
T TIGR00712       258 IANVFVYL----LRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIA  333 (438)
T ss_pred             HHHHHHHH----HHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHH
Confidence            43333222    222333455555544 576654   5666777888999999999999996543222232222221111


Q ss_pred             -HHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 014286          306 -QVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVIN-FFVGLLFLRLLEQ  383 (427)
Q Consensus       306 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~-~~~~~~~g~l~~~  383 (427)
                       ......    ...+.+......+..+.+. .+..........|.+|++.||++.|+.+...++++ +++|.+.|.+.|+
T Consensus       334 ~~~~~~~----~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~  408 (438)
T TIGR00712       334 VIVYWMN----PAGNPLVDMICMIVIGFLI-YGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF  408 (438)
T ss_pred             HHHHHhc----CCCchHHHHHHHHHHHHHH-ccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHh
Confidence             111111    1111122222222222211 11112222356788999999999999999988875 6899999999999


Q ss_pred             hccchhHHHHHHHHHHHHHHHHHhccCCC
Q 014286          384 LGPQLLYSIFGTFCLMAVAFVKRNVVETK  412 (427)
Q Consensus       384 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (427)
                      .||...+.+.+++.+++.+......+|.|
T Consensus       409 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (438)
T TIGR00712       409 FGWDGGFMVMIGGSILAVILLIVVMIGEK  437 (438)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            99999998888888777777766666544

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.93  E-value=6.9e-25  Score=200.68  Aligned_cols=312  Identities=13%  Similarity=0.086  Sum_probs=206.3

Q ss_pred             HHhhhhhccccccccchhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHhhHHHHHHHHHHH
Q 014286           57 TLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISA  136 (427)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~  136 (427)
                      ..+.++..+......+.+|.+..+++.+..  +.|++.+++.++..++++++|+++||+|||++++.+.++..++.++.+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~--~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~   82 (365)
T TIGR00900         5 FAAQLISLIGTAITQVALPLYVLAGTGSAS--VLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLP   82 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccHH--HHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHH
Confidence            344555556667777888999999886544  449999999999999999999999999999999999999999999988


Q ss_pred             hhh-----hhHHHHHHHHHHhhhccccccceeecccCCchhhhhcCChHHHHHHH------HHHhCC----------Cc-
Q 014286          137 TTR-----NLIGMLLGRFVVGTGMGLGPTVAALYVTESPHWLYKKGRTAEAEAEF------EKLLGG----------SH-  194 (427)
Q Consensus       137 ~~~-----~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~------~~~~~~----------~~-  194 (427)
                      +++     |++.+++.|+++|++.+...+...+++.|.    ..++++.......      ....+.          .. 
T Consensus        83 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~  158 (365)
T TIGR00900        83 FVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDL----VPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIK  158 (365)
T ss_pred             HHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            888     999999999999999999888888887762    1111111111100      000000          00 


Q ss_pred             --------------hhhHHHHHhhhhc-CCCC--------CcchhHhhhcccchhHHHHHHHHHHhhhccchhHHHHhHH
Q 014286          195 --------------VKSSLAELSKLDR-GDDG--------DIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSS  251 (427)
Q Consensus       195 --------------~~~~~~~~~~~~~-~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (427)
                                    ........++.++ ++++        ....+++.++++..+.......+......   .....+.|
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~  235 (365)
T TIGR00900       159 WAIWVDAVGFAISALLIVSVRIPELAASEIQALSNAVLRDTREGIKFVLKNPLLRTLLLLALLFNLVFA---PAIVALFP  235 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccCCCccccccchhHHHHHHhHHHHHHcCcHHHHHHHHHHHHHHHHH---HHHHHHhH
Confidence                          0000000000000 0000        01223445666666655444443333221   12223445


Q ss_pred             HHHHh-cCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHH
Q 014286          252 SVFKS-AGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGM  327 (427)
Q Consensus       252 ~~~~~-~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (427)
                      .+.++ .+.+..   .......++.+++.++.+++.||.+||+.+..+..+.+++...+.....       +.+...+..
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~  308 (365)
T TIGR00900       236 YVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPP-------NFPLFLVLW  308 (365)
T ss_pred             HHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhch-------hHHHHHHHH
Confidence            55443 566654   5666677888899999999999999999888776666665555443321       123344444


Q ss_pred             HHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 014286          328 LMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLG  385 (427)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g  385 (427)
                      ++.+.+.+. ..+...++..|..|+++|+++.|+.+...+++..++|.+.|.+.|..|
T Consensus       309 ~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g  365 (365)
T TIGR00900       309 FAIGVGYGP-INVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHLG  365 (365)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            444544443 345555688999999999999999999999999999999999998764

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.93  E-value=8.2e-25  Score=191.38  Aligned_cols=333  Identities=16%  Similarity=0.129  Sum_probs=211.0

Q ss_pred             CchhHHHHHHHHHHhhhhhccccccccchhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHh
Q 014286           45 SWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLC  124 (427)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~  124 (427)
                      .++.....++++++...++.+|+..+..+.+++++.+|++++..  |++.+.+.+.+.+++|++|+++|||+||+++.+|
T Consensus        27 ~~~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~--Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG  104 (493)
T KOG1330|consen   27 SMKSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSEL--GLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVG  104 (493)
T ss_pred             ccccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhc--cchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeH
Confidence            44555567889999999999999999999999999999988877  9999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccceeecccCCchhhhhcCChHHHHHHHHHHhC-------------
Q 014286          125 ALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTESPHWLYKKGRTAEAEAEFEKLLG-------------  191 (427)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-------------  191 (427)
                      ..+|.++.++++++..||+++++|.+.|+|.+...++++.+++|+    +...++......+.....             
T Consensus       105 ~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~----f~~~~Rs~~~~ify~~ipvGsglG~vvgs~v  180 (493)
T KOG1330|consen  105 IFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADS----FPDDKRSRVLGIFYFAIPVGSGLGYVVGSVV  180 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhc----CcchhhhHHHHHhhhhcccccceeEEeeeee
Confidence            999999999999999999999999999999999999999999973    222222222222111100             


Q ss_pred             -------------------------CCchhhHHHHHhhhhcCCC----CC---cchhHhhhcccchhHHHHHHHHHHhhh
Q 014286          192 -------------------------GSHVKSSLAELSKLDRGDD----GD---IVKFEELLYGRHFRVVFIGSTLFALQQ  239 (427)
Q Consensus       192 -------------------------~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (427)
                                               ....+++.+...++.+.+.    ..   ..+.+.+.+++.+....+.+....+..
T Consensus       181 a~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~~~~~~~~~~~~ts~~kDl~~l~~~~v~v~~sl~~~a~~fv~  260 (493)
T KOG1330|consen  181 ASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPERGARDEVDGENKMVKPFTSVWKDLKVLAKIKVFVLSSLGIIAAQFVI  260 (493)
T ss_pred             ccCccceEEEEEeehHHHHHHHHHHHhhccCcccccccccccCCcCCCCccchHHHHHHHHccCceeeehHHHHHHHHhc
Confidence                                     0011111111111111111    11   122333444455544444444444433


Q ss_pred             ccchhHHHHhHHHHHHhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCc----cchhhhhhHHHHHH----HHHHHH
Q 014286          240 LSGINAIFYFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGR----KALLQWSFFSMAVS----MAIQVA  308 (427)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~----~~~~~~~~~~~~~~----~~~~~~  308 (427)
                      .....+.+.+.++..+..+.+..   ....+...++.+|.+++|.++||+.|    ........+..+.+    ...+..
T Consensus       261 Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~  340 (493)
T KOG1330|consen  261 GSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFL  340 (493)
T ss_pred             cccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHH
Confidence            33333334444444444444433   55666777888999999999999532    12222222222211    111111


Q ss_pred             HhhcCCCCCchhHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHH-HHHHHHHHHHHHHHHh-cc
Q 014286          309 ASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWV-INFFVGLLFLRLLEQL-GP  386 (427)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~-g~~~~~~~~g~l~~~~-g~  386 (427)
                      ....   .....+.. ..+++++............-+..|++|++.|.++.++...+..+ |.+-+|++.|.+.|+. |+
T Consensus       341 ~~~~---~~~s~~~~-~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l~g~  416 (493)
T KOG1330|consen  341 FPAF---TSSSMIFG-LILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKLRGY  416 (493)
T ss_pred             HHhh---hhHHHHHH-HHHHHHHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHHhhCC
Confidence            1111   11222222 22333333333333333333888999999999999998877665 5566666999999874 44


Q ss_pred             c
Q 014286          387 Q  387 (427)
Q Consensus       387 ~  387 (427)
                      .
T Consensus       417 ~  417 (493)
T KOG1330|consen  417 K  417 (493)
T ss_pred             C
Confidence            4

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.93  E-value=9.2e-24  Score=193.98  Aligned_cols=326  Identities=15%  Similarity=0.109  Sum_probs=202.8

Q ss_pred             hhhhhccccccccchhhh-hhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHH-HhhHHHHHHHHHHH
Q 014286           59 SSFLFGYHLGVVNEPLES-ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQ-LCALPMIIGASISA  136 (427)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~-~~~~~~~~~~~~~~  136 (427)
                      .++..++..+...|.+|. +++++|.+..+.  |++.+.+.++..+.++++|.++||+||||.++ .+.++..++.++++
T Consensus         5 ~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~   82 (375)
T TIGR00899         5 VAFLTGIAGALQFPTLSLFLSEEVRARPAMI--GLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFA   82 (375)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHcccCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHH
Confidence            355566667777888886 568899876655  99999999999999999999999999988765 45666677888899


Q ss_pred             hhhhhHHHHHHHHHHhhhccccccceeecccCCchhhhhcCChHHH--HH------HHHHHhCCC---------chhh--
Q 014286          137 TTRNLIGMLLGRFVVGTGMGLGPTVAALYVTESPHWLYKKGRTAEA--EA------EFEKLLGGS---------HVKS--  197 (427)
Q Consensus       137 ~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~--~~------~~~~~~~~~---------~~~~--  197 (427)
                      +++|++.+++.|+++|.+.+...+....+..|.    ..+++....  ..      .+....+..         ..+.  
T Consensus        83 ~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f  158 (375)
T TIGR00899        83 WNRNYFLLLVLGVLLSSFASTANPQLFALAREH----ADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMF  158 (375)
T ss_pred             hcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHH----hhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHH
Confidence            999999999999999888777666655555441    111111100  00      011111100         0000  


Q ss_pred             -------------HHHHHhhhhc--CCCCCcchhHhhhcccchhHHHHHHHHHHhhhccchhHHHHhHH-HHHHhcCCCh
Q 014286          198 -------------SLAELSKLDR--GDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSS-SVFKSAGLSS  261 (427)
Q Consensus       198 -------------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~  261 (427)
                                   .....++.++  +++..+.+.++.++++.++......++....    ......+.+ ++.++.|.++
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~  234 (375)
T TIGR00899       159 LTAALAFVLCGVLVWLFLPSYPRGAPGALTRLEVRGLLASRDTRLLFVACTLMWGC----NILYIINMPLLIIHELGLPD  234 (375)
T ss_pred             HHHHHHHHHHHHHHHHhCCCcccCcccccCcchhhhhhcCcchHHHHHHHHHHHHH----HHHHHhhhHHHHHHHcCCCH
Confidence                         0000111111  1111122344556666665544433332221    111222233 3445667776


Q ss_pred             hH---HHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcc
Q 014286          262 GL---ANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGA  338 (427)
Q Consensus       262 ~~---~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (427)
                      ..   ......+..+++.++.|++.||++||+.+..+.....+....+....+        .+.......+.+.+.+.. 
T Consensus       235 ~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~g~~~g~~-  305 (375)
T TIGR00899       235 KLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNS--------LWALLMLQLLNAIFIGIL-  305 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH-
Confidence            63   333344456677889999999999999887766655444433332211        122233333333333322 


Q ss_pred             cchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHH
Q 014286          339 GPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFV  404 (427)
Q Consensus       339 ~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~  404 (427)
                      .+....+..|..|+ +++++.++.+...++|..++|.+.|.+.+..|++..+.+.+++.+++.++.
T Consensus       306 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~  370 (375)
T TIGR00899       306 AGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCL  370 (375)
T ss_pred             HHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Confidence            34455577888775 567999999999999999999999999999999999988888777766554

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.93  E-value=1.9e-24  Score=198.78  Aligned_cols=322  Identities=14%  Similarity=0.077  Sum_probs=197.7

Q ss_pred             hhhhhccccccccchhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHhhHHHHHHHHHHHhh
Q 014286           59 SSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT  138 (427)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~  138 (427)
                      +++...++...+++..|.+.+++|++.++.  |++.+++.++..+++++.|+++||+|||+++..+.++.+++.++++++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~   80 (379)
T TIGR00881         3 GYAAYYLVRKNFALAMPYLVEEIGLSKTDL--GLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFS   80 (379)
T ss_pred             hhhHHHHhHHhhhhhhHHHHHHhCCCHhHH--HHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHh
Confidence            345666778888889999999999876666  999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHhhhccccccceeecccCCch----------------------------hhhhcCChHHHHHHHH---
Q 014286          139 RNLIGMLLGRFVVGTGMGLGPTVAALYVTESPH----------------------------WLYKKGRTAEAEAEFE---  187 (427)
Q Consensus       139 ~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~----------------------------~~~~~~~~~~~~~~~~---  187 (427)
                      ++++.+++.|++.|++.+...+....++.|...                            .+.....+........   
T Consensus        81 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (379)
T TIGR00881        81 TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIA  160 (379)
T ss_pred             hhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence            999999999999999999888888877764210                            0000001100000000   


Q ss_pred             ---HHhCCCchhhHHHH-----Hhh--hhc------CC----CCCcchhHhhhcccchhHHHHHHHHHHhhhccchhHHH
Q 014286          188 ---KLLGGSHVKSSLAE-----LSK--LDR------GD----DGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIF  247 (427)
Q Consensus       188 ---~~~~~~~~~~~~~~-----~~~--~~~------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (427)
                         ........++..++     .++  .++      ++    +..+...++.++++..+...+...+....    .....
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~  236 (379)
T TIGR00881       161 IIVSLICFLLLRDSPQSCGLPPAEEMPNEEPDGDAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVV----RTGIL  236 (379)
T ss_pred             HHHHHHHheeeCCCccccccCccccCcccccccccccccccccchHHHHHHHHhcchHHHHHHHHHHHHHH----HHHHH
Confidence               00000000000000     000  000      00    00111234456666655544444333322    22333


Q ss_pred             HhHHHH-HHhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHH
Q 014286          248 YFSSSV-FKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLS  323 (427)
Q Consensus       248 ~~~~~~-~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (427)
                      .+.+.+ .+..|.+..   .......++.+++.++.+++.||..+++...............+......   .....+..
T Consensus       237 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~  313 (379)
T TIGR00881       237 DWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLN---PAANPLMD  313 (379)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcC---cchhHHHH
Confidence            344444 345677655   56666778888999999999998643322222221111111111111100   01111222


Q ss_pred             HHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhH
Q 014286          324 VGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLY  390 (427)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~  390 (427)
                      .......+. ...+..+....+..|.+|+++|+++.|+.+...++|+.++|.+.|.+.|+.||+..|
T Consensus       314 ~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f  379 (379)
T TIGR00881       314 LICLFALGF-LVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGAF  379 (379)
T ss_pred             HHHHHHHHH-HHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence            222222222 222333444557889999999999999999999999999999999999999987653

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.92  E-value=4e-24  Score=201.63  Aligned_cols=346  Identities=11%  Similarity=0.052  Sum_probs=211.7

Q ss_pred             hhHHHHHHHHHHhhhhhccccccccchhhhhhh----------------------ccCCCCchhHHHHHHHHHHHHHHHH
Q 014286           47 KLSFPHVLVATLSSFLFGYHLGVVNEPLESISL----------------------DLGFNGNTLAEGLVVSMCLGGAFIG  104 (427)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~----------------------~~~~~~~~~~~g~~~s~~~l~~~~~  104 (427)
                      +.++.++.+++++....+.|+..++...+.+.+                      |++++..+.  |++.+.+.+++.++
T Consensus        15 ~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--g~~~s~~~~~~~~~   92 (465)
T TIGR00894        15 SFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQ--GLILSSHFYGQIII   92 (465)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHh--hHHHHHHHHHHHHH
Confidence            344567777788888888999888888888876                      677655544  99999999999999


Q ss_pred             HHhHHhhhcccchhHHHHHhhHHHHHHHHHHHhh--hhhHHHHHHHHHHhhhccccccceeecccCCch-----------
Q 014286          105 STLSGWIADGVGRRRAFQLCALPMIIGASISATT--RNLIGMLLGRFVVGTGMGLGPTVAALYVTESPH-----------  171 (427)
Q Consensus       105 ~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~-----------  171 (427)
                      +++.|+++||+|||+++..+.++++++++++.++  .+++.+++.|+++|++.+...+....+++|..+           
T Consensus        93 ~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  172 (465)
T TIGR00894        93 QIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMS  172 (465)
T ss_pred             HcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHH
Confidence            9999999999999999999999999999887654  568899999999999999999988888775210           


Q ss_pred             ----------------hhhhc-CChHHHH------HH---HHH-HhC-CCc-h-----hhHHHHHhhhhcC---CCCCcc
Q 014286          172 ----------------WLYKK-GRTAEAE------AE---FEK-LLG-GSH-V-----KSSLAELSKLDRG---DDGDIV  214 (427)
Q Consensus       172 ----------------~~~~~-~~~~~~~------~~---~~~-~~~-~~~-~-----~~~~~~~~~~~~~---~~~~~~  214 (427)
                                      ++... ..+....      ..   +.. ... ... .     +.+.+..++..++   +.+.+.
T Consensus       173 ~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  252 (465)
T TIGR00894       173 TSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCISKFEKKYINSSLQGQKGSTRQSL  252 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHhhcccccCCCCCCC
Confidence                            00000 0110000      00   000 000 000 0     0000000000000   111223


Q ss_pred             hhHhhhcccchhHHHHHHHHHHhhhccchhHHHHhHHHHH-HhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccc
Q 014286          215 KFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVF-KSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKA  290 (427)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~  290 (427)
                      +++++++++..+...+..+....    .......|.|.++ +..|.+..   ....+..++.+++.++.|+++||+++|+
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~  328 (465)
T TIGR00894       253 PIKAIPKSLPVWAIWFAIFGHFW----LYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSK  328 (465)
T ss_pred             CHHHHhcCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            46777777766655544433332    3444455666554 44677654   5566677888899999999999976443


Q ss_pred             hhh------hhhHHHH--HHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHH
Q 014286          291 LLQ------WSFFSMA--VSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVC  362 (427)
Q Consensus       291 ~~~------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~  362 (427)
                      ...      ....+..  .+...+.....     ....+..+..+.+.+.+.+ ...+.......|..| +.+|.+.|+.
T Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~-~~~g~~~g~~  401 (465)
T TIGR00894       329 TLSLTAARKIFNGIGGLGPGIFAYALPYL-----SAAFYLTIIILTLANAVSS-GPLAGVLINSLDLAP-RFLGFIKGIT  401 (465)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCchHHHHHHHHHHHHHhh-hhhhhhhhchhhcCh-hHHHHHHHHH
Confidence            211      1111111  11111111110     1111222222222222222 222333334557666 5899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHh---ccchhHHHHHHHHHHHHHHHH
Q 014286          363 MSVHWVINFFVGLLFLRLLEQL---GPQLLYSIFGTFCLMAVAFVK  405 (427)
Q Consensus       363 ~~~~~~g~~~~~~~~g~l~~~~---g~~~~~~~~~~~~~~~~~~~~  405 (427)
                      +..+.+++.++|.+.|.+.+..   +|...|.+.+++.+++.++..
T Consensus       402 ~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~  447 (465)
T TIGR00894       402 GLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYL  447 (465)
T ss_pred             HHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHee
Confidence            9999999999999999987653   377788888777777665554

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.92  E-value=9.9e-24  Score=195.06  Aligned_cols=341  Identities=15%  Similarity=0.148  Sum_probs=199.8

Q ss_pred             hhHHHHHHHHHHhhhhhccccccccchhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHhhH
Q 014286           47 KLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCAL  126 (427)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~  126 (427)
                      .........+.+..+...++...+.|.+|.+.++++.+.++.  ++..+++.+++.++++++|+++||+|||++++.+.+
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~~--~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~   89 (413)
T PRK15403         12 AATLFFPMALILYDFAAYLTTDLIQPGIINVVRDFNADVSLA--PASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGAL   89 (413)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHH
Confidence            333334455566667777888999999999999999866665  899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccceeecccCCchhhhhcCChHHHHHHH----------HHHhCC----
Q 014286          127 PMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTESPHWLYKKGRTAEAEAEF----------EKLLGG----  192 (427)
Q Consensus       127 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~----------~~~~~~----  192 (427)
                      +++++++++++++|++.++++|+++|++.+...+....++.|.    ..+++..+.....          ....+.    
T Consensus        90 ~~~~~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~  165 (413)
T PRK15403         90 IFTLACAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEA----FGQTKGIKLMAIITSIVLVAPIIGPLSGAALMH  165 (413)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999876555555555441    1111111111100          000000    


Q ss_pred             --Cc--------------hhhHHHHHhhhhcCCCC--C----cchhHhhhcccchhHHHHHHHHHHhhhccchhHHHHhH
Q 014286          193 --SH--------------VKSSLAELSKLDRGDDG--D----IVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFS  250 (427)
Q Consensus       193 --~~--------------~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (427)
                        .+              ........++.++++++  .    ...++++++++.++...+...+....    ......+.
T Consensus       166 ~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~----~~~~~~~~  241 (413)
T PRK15403        166 FVHWKVLFAIIAVMGLIAFVGLLLAMPETVKRGAVPFSAKSVLRDFRNVFRNRLFLTGAATLSLSYIP----MMSWVAVS  241 (413)
T ss_pred             hcCHHHHHHHHHHHHHHHHHHHHHhCCCCccccCCCCChHHHHHHHHHHHcCHHHHHHHHHHHHHHHH----HHHHHHhC
Confidence              00              00000001111111111  1    12445667777666554444333322    22233344


Q ss_pred             HHHH-HhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHH
Q 014286          251 SSVF-KSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGG  326 (427)
Q Consensus       251 ~~~~-~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (427)
                      |.+. +..|.+..   +.......+.+++..+.+++.++..+++.......+..++..++.......   ....+.....
T Consensus       242 P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~---~~~~~~~~~~  318 (413)
T PRK15403        242 PVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLW---PHVWLWSVLG  318 (413)
T ss_pred             hHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHc---cccHHHHHHH
Confidence            5444 44577766   344445666677777777765544443333322333333333332221100   1111223344


Q ss_pred             HHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHH
Q 014286          327 MLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAF  403 (427)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~  403 (427)
                      ..+++.+.+....+... ..-+. ....+|++.|+.+.....+..+++...+++.++ +...+|...++++.+....
T Consensus       319 ~~l~~~G~~~~~p~~~~-~al~~-~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~  392 (413)
T PRK15403        319 TSLYAFGIGLIFPTLFR-FTLFS-NNLPKGTVSASLNMVILMVMAVSVEIGRWLWFN-GGRLPFHLLAVVAGVIVVF  392 (413)
T ss_pred             HHHHHHHHHHHhHHHHH-HHhcc-CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHHHHHHH
Confidence            44455554443333322 22111 123479999999999999999999999988775 6666666666555544333

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.92  E-value=1.7e-23  Score=192.34  Aligned_cols=328  Identities=16%  Similarity=0.102  Sum_probs=201.7

Q ss_pred             HHhhhhhccccccccchhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHhhHHHHHHHHHHH
Q 014286           57 TLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISA  136 (427)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~  136 (427)
                      +++.++..+.........+.+.+|++.+..+  .+++.+.+.+++.++++++|+++||+|||++++.+.+++++++++++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~   86 (393)
T PRK11195          9 MAAQFFSALADNALLFAAIALLKELHYPDWS--QPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLML   86 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCcHHH--HHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHH
Confidence            4444554454444455566677888865444  49999999999999999999999999999999999999999999888


Q ss_pred             hhhhhHHHHHHHHHHhhhccccccceeecccCCchhhhhcCChHHHHHHHHHHh------CC----Cc----hh------
Q 014286          137 TTRNLIGMLLGRFVVGTGMGLGPTVAALYVTESPHWLYKKGRTAEAEAEFEKLL------GG----SH----VK------  196 (427)
Q Consensus       137 ~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~------~~----~~----~~------  196 (427)
                      ++++.   ++.|+++|++.+...|...++++|    +..+++..++........      +.    ..    ..      
T Consensus        87 ~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~----~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~~~~~~~i~  159 (393)
T PRK11195         87 FGIHP---LLAYGLVGIGAAAYSPAKYGILTE----LLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPHAEAALAVC  159 (393)
T ss_pred             HHHHH---HHHHHHHHHHHHHHHHHHHHHHHH----HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            87764   789999999999999999988886    222233322222111100      00    00    00      


Q ss_pred             h------HH--HHHhhhhcC-C--CCC--------cchhHhhhcccchhHHHHHHHHHHhhhccchhHHHHhH-HHHHHh
Q 014286          197 S------SL--AELSKLDRG-D--DGD--------IVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFS-SSVFKS  256 (427)
Q Consensus       197 ~------~~--~~~~~~~~~-~--~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  256 (427)
                      .      ..  ...++.+.+ +  +.+        ...++.+++++..+.......+.....    ....+.. ++..+.
T Consensus       160 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~  235 (393)
T PRK11195        160 ALIYLLAALFNLFIPRLGARRPGQSWNPIALLRDFFHACRVLWRDKLGRFSLAGTTLFWGAG----ATLRFLVLAWAPVA  235 (393)
T ss_pred             HHHHHHHHHHHhcCCCCcccccccCCCHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence            0      00  000110000 0  000        011344566666554433332222211    1112222 223334


Q ss_pred             cCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHH
Q 014286          257 AGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLT  333 (427)
Q Consensus       257 ~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (427)
                      .|.++.   ......+++.++++++.+++.||.++++.+..+.. .++....+....        +.+.......+.+.+
T Consensus       236 lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~~--------~~~~~~~~~~~~G~~  306 (393)
T PRK11195        236 LGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMALQH--------SLLPAYPLLILIGAL  306 (393)
T ss_pred             cCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHHHh--------HHHHHHHHHHHHHHh
Confidence            566554   56677778889999999999999998877766643 333322222211        123333344445555


Q ss_pred             HhhcccchhhhhccCcCCccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhc
Q 014286          334 FALGAGPVPSLLLPEIFPSRI-RAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNV  408 (427)
Q Consensus       334 ~~~~~~~~~~~~~~~~~p~~~-~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  408 (427)
                      .+....+... ...+..|++. +|++.++.+...+++..++..+.+.+ +..|.+..+.+.+...+++..+.+.++
T Consensus       307 ~g~~~~~~~~-~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (393)
T PRK11195        307 GGFFVVPMNA-LLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVPVVAVIVGFGLLVALAMALLWR  380 (393)
T ss_pred             hhhhhhhHHH-HHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444 6677666554 79999999999999999999998855 678888777776666666655554444

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.92  E-value=3e-23  Score=191.47  Aligned_cols=316  Identities=20%  Similarity=0.198  Sum_probs=191.4

Q ss_pred             HhhhhhccccccccchhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHhhHHHHHHHHHHHh
Q 014286           58 LSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISAT  137 (427)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~  137 (427)
                      ...+..........+.+|.+.+++|.+.++.  ++..+.+.++..+++++.|+++||+|||++++.+.++..++.+++.+
T Consensus        10 ~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~   87 (392)
T PRK10473         10 ALVLLYPAGIDMYLVGLPRIAADLNASEAQL--HIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSL   87 (392)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHH
Confidence            3334444455556678999999999866555  99999999999999999999999999999999999999999999999


Q ss_pred             hhhhHHHHHHHHHHhhhccccccceeecccCCchhhhhcCChHHHHHHHH----------H----H-h-CCCchh-----
Q 014286          138 TRNLIGMLLGRFVVGTGMGLGPTVAALYVTESPHWLYKKGRTAEAEAEFE----------K----L-L-GGSHVK-----  196 (427)
Q Consensus       138 ~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~----------~----~-~-~~~~~~-----  196 (427)
                      +++++.+++.|+++|++.+...+....++.|.    ..++++........          .    . . ...+..     
T Consensus        88 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~----~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~  163 (392)
T PRK10473         88 AETSSLFLAGRFLQGIGAGCCYVVAFAILRDT----LDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTM  163 (392)
T ss_pred             hCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHH----cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHH
Confidence            99999999999999999988887777777652    11111111111000          0    0 0 000000     


Q ss_pred             -------h--HHHHHhhhhcC-CC---CCcchhHhhhcccchhHHHHHHHHHHhhhccchhHHHHhHH-HHHHhcCCChh
Q 014286          197 -------S--SLAELSKLDRG-DD---GDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSS-SVFKSAGLSSG  262 (427)
Q Consensus       197 -------~--~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~  262 (427)
                             .  .....++.+++ ++   ......++.++++.++...+...+....    ......+.+ +..++.|.+..
T Consensus       164 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~  239 (392)
T PRK10473        164 AAMGILVLLLSLFILKETRPARAPAASSKPRENSESLLNRFFLSRLVITTLSVTV----ILTFVNTSPVLLMEQMGFSRG  239 (392)
T ss_pred             HHHHHHHHHHHHHHcCCCCCcccCCccchHHHHHHHHhCHHHHHHHHHHHHHHHH----HHHHHHhCHHHHHHHcCCCHH
Confidence                   0  00000111111 01   1112334556665544333322222211    111222233 33456677765


Q ss_pred             ---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhccc
Q 014286          263 ---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAG  339 (427)
Q Consensus       263 ---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (427)
                         ......+++.+++.++.+++.||+|||+.+..+..+..++.+.+......        +.......+...+++.+..
T Consensus       240 ~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~~~g~~~~~~  311 (392)
T PRK10473        240 EYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSH--------AVSLFGITLICAGFSVGFG  311 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHhH
Confidence               45566777888999999999999999999888887777776665554321        1222223333333333322


Q ss_pred             chhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Q 014286          340 PVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFC  397 (427)
Q Consensus       340 ~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~  397 (427)
                      ..   ...+..|.++|+   |.......++..+++.+.+.+.+..|+.....+.+.+.
T Consensus       312 ~~---~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~~~~~~~  363 (392)
T PRK10473        312 VA---MSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVLGISAWNMLIGILI  363 (392)
T ss_pred             HH---HHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence            21   333444544443   44455566778888888888888888765454444433

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.92  E-value=3.3e-23  Score=188.53  Aligned_cols=328  Identities=25%  Similarity=0.312  Sum_probs=227.9

Q ss_pred             HHHHhhhhhccccccccchhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHhhHHHHHHHHH
Q 014286           55 VATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASI  134 (427)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~  134 (427)
                      .+.+..+...++.....+..|.+.+++|.+.++.  +++.+.+.++..++++++|+++||+|||+.+..+.++..++.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~   80 (352)
T cd06174           3 LLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQA--GLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLL   80 (352)
T ss_pred             HHHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHH
Confidence            3445566677778888899999999998765555  99999999999999999999999999999999999999999999


Q ss_pred             HHhhhhhHHHHHHHHHHhhhccccccceeecccCCchhhhhcCChHHHHHHHHHHhCCCchhhH--HHHHhhhhcCCCCC
Q 014286          135 SATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTESPHWLYKKGRTAEAEAEFEKLLGGSHVKSS--LAELSKLDRGDDGD  212 (427)
Q Consensus       135 ~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  212 (427)
                      +.++++++.++++|++.|++.+...+....++.|    ...++++...................  .....+...    .
T Consensus        81 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~----~  152 (352)
T cd06174          81 LAFASSLWLLLVGRFLLGLGGGALYPAAAALIAE----WFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLG----W  152 (352)
T ss_pred             HHHhccHHHHHHHHHHHHcccccccHhHHHHHHH----hCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh----H
Confidence            9999999999999999999999998888888887    33333333322221111100000000  000000000    0


Q ss_pred             cchhH------------hhhcccchhHHHHHHHHHHhhhccchhHHHHhHHHHHHhc-CCChh---HHHHHHHHHHHHHH
Q 014286          213 IVKFE------------ELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSA-GLSSG---LANVFVGIANLLGS  276 (427)
Q Consensus       213 ~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~---~~~~~~~~~~~~~~  276 (427)
                      +..+.            ..+-.+..+...    +..+...........+.+.+.++. +.+..   .......++..++.
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  228 (352)
T cd06174         153 RWLFLILAILGLLLALLLLFLLRLLLLLA----LAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGA  228 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence            00000            000001122221    222222223444455555555543 66655   56677788889999


Q ss_pred             HhHhhhhcccCccc-hhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcccchhhhhccCcCCccch
Q 014286          277 VVAMVLMDKLGRKA-LLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIR  355 (427)
Q Consensus       277 ~~~g~l~d~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  355 (427)
                      ++.+++.||++||+ .+..+..+..++...+....+        .+.......+.+.+.+ ...+....+..|..|+++|
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--------~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~  299 (352)
T cd06174         229 LLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPS--------LALLLVALLLLGFGLG-FAFPALLTLASELAPPEAR  299 (352)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcc--------HHHHHHHHHHHHHHHh-ccchhHHHHHHhhcCHHHH
Confidence            99999999999999 888888888887776665432        2333444444444444 3456666699999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Q 014286          356 AKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVK  405 (427)
Q Consensus       356 g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  405 (427)
                      ++..|+.+...+++..++|.+.|.+.+..+++..+.+.+++.+++.++.+
T Consensus       300 ~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~  349 (352)
T cd06174         300 GTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLL  349 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhe
Confidence            99999999999999999999999999999999999988888877766543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.92  E-value=1.3e-23  Score=194.23  Aligned_cols=324  Identities=17%  Similarity=0.160  Sum_probs=192.3

Q ss_pred             hhhccccccccchhhhhhhccCCCCchhHHHHHHHH-----HHHHHHHHHHhHHhhhcccchhHHHHHhhHHHHHHHHHH
Q 014286           61 FLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSM-----CLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASIS  135 (427)
Q Consensus        61 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~-----~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~  135 (427)
                      +.+++++..+++..+.+.+++..+.++.+.+.+.+.     ..++..+++++.|+++||+|||+++..+.++..++++++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~   82 (394)
T TIGR00883         3 AVEWFDFYLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLI   82 (394)
T ss_pred             chhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            455677777777888888776542333333444432     334445789999999999999999999999999999999


Q ss_pred             HhhhhhH--------HHHHHHHHHhhhccccccceeecccCCchhhhhcCChHHHHHH------HHH----H--------
Q 014286          136 ATTRNLI--------GMLLGRFVVGTGMGLGPTVAALYVTESPHWLYKKGRTAEAEAE------FEK----L--------  189 (427)
Q Consensus       136 ~~~~~~~--------~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~------~~~----~--------  189 (427)
                      +++++++        .++++|+++|++.+...+....++.|.    ..++++......      +..    .        
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~----~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~  158 (394)
T TIGR00883        83 GLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEY----APPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYL  158 (394)
T ss_pred             hhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhc----CCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999875        488999999999999888888887762    111111111000      000    0        


Q ss_pred             hC------CCc----------------hh---hHHHHHhhhhcCCCCCcchhHhhhcccchhHHHHHHHHHHhhhccchh
Q 014286          190 LG------GSH----------------VK---SSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGIN  244 (427)
Q Consensus       190 ~~------~~~----------------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (427)
                      ..      ..+                ..   .+.++.++.++++++.+.+.++.++++..+ .........+... ...
T Consensus       159 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~  236 (394)
T TIGR00883       159 LGDDALLEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQEKHKKKRGPIRETLTKHRKP-FLLGLGLVIATTT-TFY  236 (394)
T ss_pred             cCHHHhhccchHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHhccccccCCHHHHHHhchHH-HHHHHHHHHHHHH-HHH
Confidence            00      000                00   000000011111122234456666655422 2222222222222 233


Q ss_pred             HHHHhHHHHH-HhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHH-HHHHHHhhcCCCCCch
Q 014286          245 AIFYFSSSVF-KSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSM-AIQVAASSSYIPGSAS  319 (427)
Q Consensus       245 ~~~~~~~~~~-~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  319 (427)
                      ....+.|.+. ++.|.+..   .......+...++.++.|+++||+|||+.+.....+..+.. ..+.....     ...
T Consensus       237 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~  311 (394)
T TIGR00883       237 LITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLD-----SGS  311 (394)
T ss_pred             HHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhc-----CCc
Confidence            3334455554 55666655   45556677888899999999999999987765544443332 22221111     112


Q ss_pred             hHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHH-HHHHHHHHHHHHHHHHHHHHhc-cchhHHHHHHH
Q 014286          320 LYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCM-SVHWVINFFVGLLFLRLLEQLG-PQLLYSIFGTF  396 (427)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~-~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~  396 (427)
                      .+.......+.+.+.+.. .+...+++.|.+|++.|+++.++.+ ....+|..++|.+.|.+.++.| +...++...++
T Consensus       312 ~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~  389 (394)
T TIGR00883       312 FTLFFFLVLGLALIGGMY-TGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAAL  389 (394)
T ss_pred             hHHHHHHHHHHHHHHHHH-hhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHH
Confidence            223333333344433333 3445568999999999999999854 4456788899999999999988 66555544443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK10054 putative transporter; Provisional

Probab=99.92  E-value=1.8e-23  Score=192.25  Aligned_cols=331  Identities=13%  Similarity=0.085  Sum_probs=201.8

Q ss_pred             hhhhhccccccccchhh-hhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHhhHHHHHHHHHHHh
Q 014286           59 SSFLFGYHLGVVNEPLE-SISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISAT  137 (427)
Q Consensus        59 ~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~  137 (427)
                      ..+..........|.+| .+.+++|++..+.  |++.+.+.++..+++++.|+++||+|||++++++.++.+++.++.++
T Consensus        15 ~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~--g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~   92 (395)
T PRK10054         15 SSLLLTIGRGATLPFMTIYLSRQYSLSVDLI--GYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPL   92 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHH
Confidence            34444455555566666 4567889866655  99999999999999999999999999999999999999999999999


Q ss_pred             hhhhHHHHHHHHHHhhhccccccceeecccCCchhhhhcCChHHHHHHH------HH---------Hh--CCCc------
Q 014286          138 TRNLIGMLLGRFVVGTGMGLGPTVAALYVTESPHWLYKKGRTAEAEAEF------EK---------LL--GGSH------  194 (427)
Q Consensus       138 ~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~------~~---------~~--~~~~------  194 (427)
                      +++++.++++|++.|.+.+...+....+..|.    ...++..+.....      ..         +.  +...      
T Consensus        93 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~----~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~~g~~~~f~~~~  168 (395)
T PRK10054         93 VNNVTLVVLFFALINCAYSVFSTVLKAWFADN----LSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVMQSINLPFWLAA  168 (395)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHH
Confidence            99999999999998887776666555555431    1111111110000      00         00  0000      


Q ss_pred             ---------hhhHHHHHhhhhcCCCCCcchhHhhhcccchhHHHHHHHHHHhhhccchhHHHHhHHHHHHhcCCChh---
Q 014286          195 ---------VKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSG---  262 (427)
Q Consensus       195 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---  262 (427)
                               .....++.++++++++++..+.++.++++.++......++..............+.+.. .+.+.+..   
T Consensus       169 ~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g  247 (395)
T PRK10054        169 ICSAFPLVFIQIWVQRSEKAIATETGSVWSPSVLLQDKALLWFTCSGFLASFVSGAFASCISQYVMVV-ADSDFAEKVVA  247 (395)
T ss_pred             HHHHHHHHHHHHHHhccccccccchhhhhhhhhhccCceehHHHHHHHHHHHHHHHhhhhHHHHHHHh-cccchHHHHHH
Confidence                     00000011000011111112235667777776655544443332222222333333322 23344333   


Q ss_pred             HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcccchh
Q 014286          263 LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVP  342 (427)
Q Consensus       263 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (427)
                      .......+.........|++.||.++|+.+..+..+..++...+.....       +.+...+...+++.+.. ...|..
T Consensus       248 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~g~~-~~~p~~  319 (395)
T PRK10054        248 VVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGN-------SLLLWGMSAAVFTVGEI-IYAPGE  319 (395)
T ss_pred             HHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcch-------HHHHHHHHHHHHHHHHH-HHHhhH
Confidence            2333333444455677889999999999888887777776655543211       11222333334444432 224455


Q ss_pred             hhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Q 014286          343 SLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVK  405 (427)
Q Consensus       343 ~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  405 (427)
                      ...+.+..|++.++++.+..+ ..++|..+||.+.|.+.|+.|+...|.+.+.+..+..++..
T Consensus       320 ~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~  381 (395)
T PRK10054        320 YMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLML  381 (395)
T ss_pred             HHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHH
Confidence            568888899999999998755 67789999999999999999998888776666555544443

>TIGR00896 CynX cyanate transporter

Probab=99.92  E-value=6.5e-23  Score=186.63  Aligned_cols=299  Identities=14%  Similarity=0.120  Sum_probs=191.9

Q ss_pred             ccccccchhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHhhHHHHHHHHHHHhhhhhHHHH
Q 014286           66 HLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGML  145 (427)
Q Consensus        66 ~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~  145 (427)
                      .....+|.+|.+.+++|++.++.  |++.+.+.+++.+++++.|+++||+|||+++..+.++..++.+.+ .+++++.++
T Consensus        15 ~~~~~~~~lp~l~~~~~~s~~~~--g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~   91 (355)
T TIGR00896        15 ALTSVGPLLPQIRSALGMSFSVA--GLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLF   91 (355)
T ss_pred             ccccCcccHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHH
Confidence            33567899999999999876666  999999999999999999999999999999999999988888887 788999999


Q ss_pred             HHHHHHhhhccccccceeecccCCchhhhhcCChHHHHHHHH---------------HHhCC--C-c-------------
Q 014286          146 LGRFVVGTGMGLGPTVAALYVTESPHWLYKKGRTAEAEAEFE---------------KLLGG--S-H-------------  194 (427)
Q Consensus       146 ~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~---------------~~~~~--~-~-------------  194 (427)
                      +.|++.|++.+...+....++.|.   . .+ +...+.....               .+...  . +             
T Consensus        92 ~~~~~~g~g~~~~~~~~~~~~~~~---~-~~-~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~  166 (355)
T TIGR00896        92 AGTALIGVGIAIINVLLPSLIKRD---F-PQ-RVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALL  166 (355)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHh---C-cc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence            999999999988766665555531   1 11 1111100000               00000  0 0             


Q ss_pred             -hhhHHHHHhhhhcCC-CCCcchhHhhhcccchhHHHHHHHHHHhhhccchhHHHHhHHHHHHhcCCChh---HHHHHHH
Q 014286          195 -VKSSLAELSKLDRGD-DGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSG---LANVFVG  269 (427)
Q Consensus       195 -~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~  269 (427)
                       .....++.+++++++ +..+...++.+|++..+...+...+...    .+.....+.|.+.++.|.+..   .......
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~  242 (355)
T TIGR00896       167 ALLAWIPQVRRRVAANQTTTRLTPVRIWRSPLAWQVTVFFGLQSG----LYYSLIGWLPAILISHGASAATAGSLLALMQ  242 (355)
T ss_pred             HHHHHhhhhccccCCCCCCCCCCCchhhcCHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence             000001111111111 1111234566666665544333322222    233344566666667787765   5666778


Q ss_pred             HHHHHHHHhHhhhhcccC-ccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcccchhhhhcc-
Q 014286          270 IANLLGSVVAMVLMDKLG-RKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLP-  347 (427)
Q Consensus       270 ~~~~~~~~~~g~l~d~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  347 (427)
                      ++.++++++.|++.||++ ||+.+..+..+.+++.+.+.+....      .  .. ....+++.+.+.. .+...+... 
T Consensus       243 ~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~--~~-~~~~l~g~~~g~~-~~~~~~~~~~  312 (355)
T TIGR00896       243 LAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMH------G--LW-AWALVLGLGQGGA-FPLALTLIGL  312 (355)
T ss_pred             HHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhh------H--HH-HHHHHHHHhhhhH-hHHHHHHHHH
Confidence            889999999999999994 6666666666666666555443211      1  11 1223334333322 333333444 


Q ss_pred             CcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 014286          348 EIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGP  386 (427)
Q Consensus       348 ~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~  386 (427)
                      +..++++++...++.+.+.+++..++|.+.|.+.|+.|.
T Consensus       313 ~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~  351 (355)
T TIGR00896       313 RSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGN  351 (355)
T ss_pred             hccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            344456779999999999999999999999999998873

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.92  E-value=5.8e-23  Score=191.13  Aligned_cols=332  Identities=15%  Similarity=0.051  Sum_probs=183.2

Q ss_pred             ccccchhhhhh-hccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHhhHHHHHHHHHHH---hhh----
Q 014286           68 GVVNEPLESIS-LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISA---TTR----  139 (427)
Q Consensus        68 ~~~~~~~~~i~-~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~---~~~----  139 (427)
                      +...|.+|... +++|++..+.  |++.+.+.++..++++++|+++||+|||++++++..+.+++.....   .++    
T Consensus        27 ~~~~~~~~~~l~~~~g~s~~~~--g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (420)
T PRK09528         27 SSWFSFFPIWLHDINGLSGTDT--GIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQY  104 (420)
T ss_pred             HHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566776554 4588866555  9999999999999999999999999999999887666655433221   111    


Q ss_pred             -hhHHHHHHHHHHhhhccccccceeecccCCchhhhhcCChHHHHH----HH-----HHHhCCC----------------
Q 014286          140 -NLIGMLLGRFVVGTGMGLGPTVAALYVTESPHWLYKKGRTAEAEA----EF-----EKLLGGS----------------  193 (427)
Q Consensus       140 -~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~----~~-----~~~~~~~----------------  193 (427)
                       .+...++++++.|.+.....+....+..+..+-............    .+     ..+....                
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~f~~~~~~~~~~~  184 (420)
T PRK09528        105 NILLGAIVGGIYLGFGFLAGAGAIEAYIERVSRRSGFEYGRARMWGSLGWALCAFIAGILFNINPQINFWLGSGSALILL  184 (420)
T ss_pred             HHHHHHHHHHHHhhhhhccchhhhhhHHHHHHhhccccchhhHHhhhHHHHHHHHHHHHHHhcCchHhHHHHHHHHHHHH
Confidence             111123334444433333322222222110000000000000000    00     0000000                


Q ss_pred             -----chhhHHHHH--hhhhc--CCCCCcchhHhhhcccchhHHHHHHHHHHhhhccchhHHHHhHHHHHHhcCCChh--
Q 014286          194 -----HVKSSLAEL--SKLDR--GDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSG--  262 (427)
Q Consensus       194 -----~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--  262 (427)
                           ..+++.++.  +++++  +++......++.+|++..+...+................+.|......+.+.+..  
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (420)
T PRK09528        185 VLLFFAKPDAPSTAKVANALGANASAVSLKDALALLKLPKFWFLVLYVIGVACFYDVFDQQFPNFFASFFATPEQGTRVF  264 (420)
T ss_pred             HHHhcccccccchhhhccchhcccccccHHHHHHHccCCCeEeehHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHH
Confidence                 000000000  00000  0111112344567777665544433222221111122233333333333344433  


Q ss_pred             -HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcccch
Q 014286          263 -LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPV  341 (427)
Q Consensus       263 -~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (427)
                       .......+...++.++.|++.||+|+|+.+..+..+.+++..++.+..+        .+..+....+.+...... .+.
T Consensus       265 g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~--------~~~~~~~~~l~g~~~~~~-~~~  335 (420)
T PRK09528        265 GYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATG--------PLEVSILKLLHAFEVPFL-LVG  335 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhccc--------HHHHHHHHHHHHHHHHHH-HHH
Confidence             4555566777889999999999999999988888877776666554321        123333333333333222 223


Q ss_pred             hhhhccCcCCccchhhHHHH-HHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhccC
Q 014286          342 PSLLLPEIFPSRIRAKAMAV-CMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVE  410 (427)
Q Consensus       342 ~~~~~~~~~p~~~~g~~~g~-~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  410 (427)
                      ...++.|.+|++.+++..+. .++...+|.+++|.+.|.+.|..||+..|.+.+++.++..++..+..++
T Consensus       336 ~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~  405 (420)
T PRK09528        336 VFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSG  405 (420)
T ss_pred             HHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcC
Confidence            33477888899999888766 6777889999999999999999999999998888887776666555554

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.91  E-value=9.3e-23  Score=187.15  Aligned_cols=326  Identities=14%  Similarity=0.079  Sum_probs=211.3

Q ss_pred             HHHhhhhhccccccccchhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHH----HHhhHHHHHH
Q 014286           56 ATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAF----QLCALPMIIG  131 (427)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l----~~~~~~~~~~  131 (427)
                      +.+.++...+..+...|.+|.+.+++|.+.++.  |++.+++.+...++++++|+++||+|||+..    ..+..+..+ 
T Consensus         9 l~~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~i--g~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~-   85 (382)
T TIGR00902         9 LALGFFGYFCAYGIFLPFFPAWLKGIGLGEEMI--GLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA-   85 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH-
Confidence            334455555666788899999999999865555  9999999999999999999999999985433    222222222 


Q ss_pred             HHHHHhhhhhHHHHHHHHHHhhhccccccceeecccCCchhhhhcCC---hHHHHHHHHHHh------------CCCch-
Q 014286          132 ASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTESPHWLYKKGR---TAEAEAEFEKLL------------GGSHV-  195 (427)
Q Consensus       132 ~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~~------------~~~~~-  195 (427)
                       ..+..+++++.+++.|+++|.+.+...+...++..+.   ...+++   .......+....            +.... 
T Consensus        86 -~~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~---~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f  161 (382)
T TIGR00902        86 -AFSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW---QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNIL  161 (382)
T ss_pred             -HHHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH---HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHH
Confidence             3455788999999999999999888777776665431   111110   000000000000            00000 


Q ss_pred             ------------hhHHHHH-hhhhc---CCCCCcchhHhhhcccchhHHHHHHHHHHhhhccchhHHHHhHHHHHHhcCC
Q 014286          196 ------------KSSLAEL-SKLDR---GDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGL  259 (427)
Q Consensus       196 ------------~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  259 (427)
                                  .....+. +++++   ++.....+.++++|+|+++...+..++.....    .....+.+.+.++.|.
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~l~~~~~----~~~~~~~~~~l~~~g~  237 (382)
T TIGR00902       162 AILTAGLAFMLIGFLIKPTIPPKDAIPEDESQGDSAFIALLKNPMNLRFLAAVCLIQGAH----AAYYGFSAIYWQAAGI  237 (382)
T ss_pred             HHHHHHHHHHHHHHHcCCCCCCCccccccccccchhHHHHHcChHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHCCC
Confidence                        0000000 00000   01111234677888887777666555544432    2223344555566888


Q ss_pred             Chh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhh
Q 014286          260 SSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFAL  336 (427)
Q Consensus       260 ~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (427)
                      +..   .......+..+++.+..+++.||+|+|+.+..+.+...+....+.+..+        .+..+....+.+..++.
T Consensus       238 s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~--------~~~~~~~q~l~g~~~~~  309 (382)
T TIGR00902       238 SASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEA--------FPLIFLLQILHCGTFAV  309 (382)
T ss_pred             CHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhh--------HHHHHHHHHHHHHHHHH
Confidence            876   3444566677788888999999999999999999888888877765433        23444455666666665


Q ss_pred             cccchhhhhccCcCCccchhhHHHHHHH-HHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHH
Q 014286          337 GAGPVPSLLLPEIFPSRIRAKAMAVCMS-VHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAF  403 (427)
Q Consensus       337 ~~~~~~~~~~~~~~p~~~~g~~~g~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~  403 (427)
                      ....... ++.+. |++++++++++++. ...+|..++|.+.|.+.|+.|+ ..|...+++.+++.++
T Consensus       310 ~~~~~~~-~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~  374 (382)
T TIGR00902       310 CHLAAMR-YIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL  374 (382)
T ss_pred             HHHHHHH-HHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence            5555444 78887 88999999999874 5668999999999999999986 5677777777665444

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.91  E-value=2.8e-22  Score=184.70  Aligned_cols=326  Identities=15%  Similarity=0.118  Sum_probs=205.8

Q ss_pred             HHHHHHhhhhhccccccccchhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHhhHHHHHHH
Q 014286           53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGA  132 (427)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~  132 (427)
                      +..+++..+..++..+..+|.+|.+++++|++..+.  |++.+.+.+++.+++++.|++.||+|||++++.++++++++.
T Consensus         5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~--g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~   82 (410)
T TIGR00885         5 FALITSLFALWGFANDITNPMVPQFQQAFTLTAFQA--ALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGA   82 (410)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence            445666777778888888999999999999876655  999999999999999999999999999999999999999999


Q ss_pred             HHHHh---hhhhHHHHHHHHHHhhhccccccceeecccCC-c-hh-------------------------hhhcC-----
Q 014286          133 SISAT---TRNLIGMLLGRFVVGTGMGLGPTVAALYVTES-P-HW-------------------------LYKKG-----  177 (427)
Q Consensus       133 ~~~~~---~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~-~-~~-------------------------~~~~~-----  177 (427)
                      +++..   .+|++.+++.|++.|+|.|...+....++.+. | +.                         +....     
T Consensus        83 ~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~  162 (410)
T TIGR00885        83 FLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQS  162 (410)
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccch
Confidence            88654   46899999999999999999888777666431 0 00                         00000     


Q ss_pred             ---------------------ChHHHHHHHHHHhCCCchhhHHHHHhhhhcCCC---CCcchhHhhhcccchhHHHHHHH
Q 014286          178 ---------------------RTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDD---GDIVKFEELLYGRHFRVVFIGST  233 (427)
Q Consensus       178 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  233 (427)
                                           .+......+..+...........+.++.+++++   ....+.++++|++.++...+..+
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f  242 (410)
T TIGR00885       163 QDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNHSDAKQISFSASLSRLARIRHYREGVIAQF  242 (410)
T ss_pred             hhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccccchhhHHHHHhChhHHHHHHHHH
Confidence                                 000000000000000000000000011000001   11123456777777776665555


Q ss_pred             HHHhhhccchhHHHHhHHHHHHhc--CCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHH
Q 014286          234 LFALQQLSGINAIFYFSSSVFKSA--GLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVA  308 (427)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~  308 (427)
                      ++...+..    ...+.+.+.++.  +.+.+   ...........+|+++++++.||+++|+.+.....+.++..++...
T Consensus       243 ~yvg~e~~----~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~  318 (410)
T TIGR00885       243 FYVGVQIM----CWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIF  318 (410)
T ss_pred             HHHHHHHH----HHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence            55443322    223444444433  22322   2334444667899999999999999999888877777766665554


Q ss_pred             HhhcCCCCCchhHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh----
Q 014286          309 ASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQL----  384 (427)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~----  384 (427)
                      ...         ......+.+.+++.+..+ |...+...+..+++.+..+.++....  +|+++.|++.|.+.|..    
T Consensus       319 ~~~---------~~~~~~l~~~glf~s~~f-p~i~sl~~~~~g~~~~~~s~~l~~~~--~Gga~~p~l~G~~~d~~~~~~  386 (410)
T TIGR00885       319 AGG---------HVGLYCLTLCSAFMSLMF-PTIYGIALKGLGQDTKYGAAGLVMAI--IGGGIVPPLQGFIIDMKEIAA  386 (410)
T ss_pred             cCC---------hHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhhhhhHHHHHHHH--hccchHHHHHHHHHHHhcccc
Confidence            321         122344444555555444 67676888888866544444544443  89999999999999965    


Q ss_pred             --ccchhHHHHHHH
Q 014286          385 --GPQLLYSIFGTF  396 (427)
Q Consensus       385 --g~~~~~~~~~~~  396 (427)
                        +.+..|++...+
T Consensus       387 ~~~~~~~~~~~~~~  400 (410)
T TIGR00885       387 APAVNTSFILPLLC  400 (410)
T ss_pred             cCccchHHHHHHHH
Confidence              366666654333

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.91  E-value=6e-23  Score=189.62  Aligned_cols=315  Identities=16%  Similarity=0.130  Sum_probs=186.7

Q ss_pred             HHHHHHHhhhhhccccccccchhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHhhHHHHHH
Q 014286           52 HVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIG  131 (427)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~  131 (427)
                      .+.+..+......+......|.+|.+.+++|.+.++.  +++.+.+.++..++++++|+++||+|||+++..+.++..++
T Consensus         9 ~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~   86 (394)
T PRK11652          9 LLFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAV--QAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILG   86 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHH
Confidence            3444444444555666777888999999999876666  99999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhHHHHHHHHHHhhhccccccceeecccCCchhhhhcCChHHHHHH------HH---------HHhCC-Cch
Q 014286          132 ASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTESPHWLYKKGRTAEAEAE------FE---------KLLGG-SHV  195 (427)
Q Consensus       132 ~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~------~~---------~~~~~-~~~  195 (427)
                      .+++.++++++.+++.|+++|++.+...+....+..|.    ...++...+...      ..         .+... .+.
T Consensus        87 ~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~  162 (394)
T PRK11652         87 TLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDL----YEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWR  162 (394)
T ss_pred             HHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh----cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChH
Confidence            99999999999999999999999887666555444431    111111111000      00         00000 000


Q ss_pred             ------------h--hHHHHHhhhhcCC---CCCcchhHhhhcccchhHHHHHHHHHHhhhccchhHHHHhHHHHH-Hhc
Q 014286          196 ------------K--SSLAELSKLDRGD---DGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVF-KSA  257 (427)
Q Consensus       196 ------------~--~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  257 (427)
                                  .  ......++.++.+   ++....+++.++++..+...+..+....    .......+.+.+. +..
T Consensus       163 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~  238 (394)
T PRK11652        163 ACYLFLLLLGAGVTFSMARWMPETRPADARRTRVLASYRTLLSNRRFNCYLLMLIGTLA----GIAVFEACSGVLMGAVL  238 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCccCccccchhHHHHHHHHHHcChHHHHHHHHHHHHHH----HHHHHHHhChHHHHHHc
Confidence                        0  0000001111111   1112345566777766554443332221    1222222233333 336


Q ss_pred             CCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHH
Q 014286          258 GLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTF  334 (427)
Q Consensus       258 g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (427)
                      |.+..   .......++.+++..+.+++.||.+++..  .......++.+.+......   .....+.......+.+.+.
T Consensus       239 g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~  313 (394)
T PRK11652        239 GLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMW--QSVICCLLAGLLMWIPGWF---GVMNVWTLLVPAALFFFGA  313 (394)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHh---ccccHHHHHHHHHHHHHHH
Confidence            77765   34444556677777888888888873322  2222222222222111110   0111233333344444444


Q ss_pred             hhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014286          335 ALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQ  383 (427)
Q Consensus       335 ~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~  383 (427)
                      +. ..|....+..|.+| +++|++.++.+....+|+.+++.+.+.+.+.
T Consensus       314 ~~-~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~  360 (394)
T PRK11652        314 GM-LFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQT  360 (394)
T ss_pred             HH-HHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            43 34555557778877 6789999999999999999999998887554

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.91  E-value=1.5e-23  Score=190.80  Aligned_cols=302  Identities=20%  Similarity=0.316  Sum_probs=197.5

Q ss_pred             HHhhhhhccccccccchhh-hhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHhhHHHHHHHHHH
Q 014286           57 TLSSFLFGYHLGVVNEPLE-SISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASIS  135 (427)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~  135 (427)
                      +++.+...++.....+.+| .+.+++|.+.++.  |++.+++.++..+++++.|+++||+|||+++..+.++.+++.+++
T Consensus         2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~   79 (352)
T PF07690_consen    2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQI--GLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLL   79 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCH--HHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHh
Confidence            3455666667777888999 8999999887777  999999999999999999999999999999999999999997777


Q ss_pred             HhhhhhHHHHHHHHHHhhhccccccceeecccCCchhhhhcCChHHHHHHHHHHhC-------------CCc--hh----
Q 014286          136 ATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTESPHWLYKKGRTAEAEAEFEKLLG-------------GSH--VK----  196 (427)
Q Consensus       136 ~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~--~~----  196 (427)
                      .+++|++.++++|+++|++.+...+....++.|.    ..+++.............             ...  .+    
T Consensus        80 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~----~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~  155 (352)
T PF07690_consen   80 AFASNFWLLLIARFLLGIGSGFFSPASNALIADW----FPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFL  155 (352)
T ss_dssp             HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHH
T ss_pred             hhhhhHHHHhhhcccccccccccccccccccccc----chhhhhhhccccccchhhhhhhcccchhhhhhhccccccccc
Confidence            7778888999999999999999999888888862    222333332222111000             000  00    


Q ss_pred             --------------hHHHHHhhhhcCC---CC---C---cch-hHhhhcccchhHHHHHHHHHHhhhccchhHHHHhHHH
Q 014286          197 --------------SSLAELSKLDRGD---DG---D---IVK-FEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSS  252 (427)
Q Consensus       197 --------------~~~~~~~~~~~~~---~~---~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (427)
                                    ....+.++.++.+   ++   .   ..+ ++.+.+++..+..+...++..+    .......+.|.
T Consensus       156 ~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~  231 (352)
T PF07690_consen  156 ISAILSLIAAILFILFLPEPPPPRERESPKESESKKPKPLKPGFKSLFKNPVLWILLIAFFLFFF----VFSGFSFFLPL  231 (352)
T ss_dssp             HHHHHHHHHHHHHHCCC---STTTT--SSTTTT--HHHCCCH-CTHHHHHHCCHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred             cccchhhhhhhhHhhhhhhcccccccccccccccccccccccccccccccchhhhhhhhhhHHHH----HHHHhhcccch
Confidence                          0000000000000   01   0   112 4555656655533333333322    23334455555


Q ss_pred             H-HHhcCCC-hh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHH
Q 014286          253 V-FKSAGLS-SG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGM  327 (427)
Q Consensus       253 ~-~~~~g~~-~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (427)
                      + .+..+.+ ..   .......+...++.++.+++.||+++++..........+....+......     .+........
T Consensus       232 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~  306 (352)
T PF07690_consen  232 YLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFS-----SSPVWLIIAL  306 (352)
T ss_dssp             HCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHH-----CHHHHHHHHH
T ss_pred             hhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHh-----hhHHHHHHHH
Confidence            4 5666777 34   34666777778889999999999998777766666655555444432221     1122333344


Q ss_pred             HHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHH
Q 014286          328 LMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVG  374 (427)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~  374 (427)
                      .+.+.+.+. ..+....+..|..|++++|++.|+.+...++++.++|
T Consensus       307 ~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  307 FLIGFGFGI-VFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHHHHHH-HCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            444444443 3556666999999999999999999999999999987

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.91  E-value=1.9e-22  Score=185.81  Aligned_cols=318  Identities=14%  Similarity=0.039  Sum_probs=190.8

Q ss_pred             ccccchhhh-hhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHhhHHHHHHHHHHHhhhhhHHHHH
Q 014286           68 GVVNEPLES-ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLL  146 (427)
Q Consensus        68 ~~~~~~~~~-i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~  146 (427)
                      ....|.+|. +.+++|++..+.  |++.+.+.++..+.++++|+++||+|||+++..+.++.+++.+++.++++++.+++
T Consensus        27 ~~~~~~~~~~~~~~~g~s~~~~--gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~  104 (400)
T PRK11646         27 FVVFPLISIRFVDQLGWAAVMV--GIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWL  104 (400)
T ss_pred             HHHHHHHHHHHHHHhCCcHHHH--HHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence            444556654 578888765555  99999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhccccccceeecccCCchhhhhcCChHHHHHHHHH------HhC---------CCc------------hh--h
Q 014286          147 GRFVVGTGMGLGPTVAALYVTESPHWLYKKGRTAEAEAEFEK------LLG---------GSH------------VK--S  197 (427)
Q Consensus       147 ~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~------~~~---------~~~------------~~--~  197 (427)
                      .|+++|++.+...+...+++.+.    ...++..++......      ..+         ...            ..  .
T Consensus       105 ~~~l~g~~~~~~~~~~~~~~~~~----~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~~g~~~~f~~~~~~~~~~~i~  180 (400)
T PRK11646        105 SCILSGLGGTLFDPPRTALVIKL----IRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQYDFRLVCATGAVLFVLAAAF  180 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh----cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            99999999887777766666542    111111111111000      000         000            00  0


Q ss_pred             HHHHHhhh--hcCCCCCcchhHhhhcccchhHHHHHHHHHHhhhccchhHHHHhHHHHHHhcCCChh---HHHHHHHHHH
Q 014286          198 SLAELSKL--DRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSG---LANVFVGIAN  272 (427)
Q Consensus       198 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~  272 (427)
                      .....++.  ++.+++.+.++++.++++.++...+........    ......+.|.+.++.+.++.   ......++..
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~p~~~~~~~~~~~~~g~l~~~~~~~~  256 (400)
T PRK11646        181 NAWLLPAYKLSTVRTPVREGMTRVLRDKRFVTYVLTLTGYYML----AVQVMLMLPIMVNDIAGSPSAVKWMYAIEACLS  256 (400)
T ss_pred             HHHhCCcccccccchhhHHHHHHHHcCchHHHHHHHHHHHHHH----HHHHHHhhhhhHHhhcCCchHHHHHHHHHHHHH
Confidence            00000110  001111223456677776655433332222211    11122345555555444433   3333444444


Q ss_pred             HHHHHhHhhhh-cccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcccchhhhhccCcCC
Q 014286          273 LLGSVVAMVLM-DKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFP  351 (427)
Q Consensus       273 ~~~~~~~g~l~-d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  351 (427)
                      ..+....+++. ||++.++.+..+..+.+++...+....+        .+.......+++.+.+. ..|...+++.|..|
T Consensus       257 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~--------~~~~~~~~~l~~~g~~~-~~p~~~~~~~~~~p  327 (400)
T PRK11646        257 LTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSN--------LQQLFTLICLFYIGSII-AEPARETLSASLAD  327 (400)
T ss_pred             HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhh--------HHHHHHHHHHHHHHHHH-HHccHHHHHHhcCC
Confidence            44444445555 4566566666666666666555443321        12222233333333332 23444558889999


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc----cchhHHHHHHHHHHHHHHH
Q 014286          352 SRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLG----PQLLYSIFGTFCLMAVAFV  404 (427)
Q Consensus       352 ~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g----~~~~~~~~~~~~~~~~~~~  404 (427)
                      +++||++.|+.+...++|..++|.+.|.+.|+.+    ....+...+.+.+++.+..
T Consensus       328 ~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (400)
T PRK11646        328 ARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITLLAL  384 (400)
T ss_pred             cccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999753    3445555555555554443

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.90  E-value=6.9e-23  Score=188.24  Aligned_cols=298  Identities=14%  Similarity=0.155  Sum_probs=178.3

Q ss_pred             cccccccchhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHhhHHHHHHHHHHHhhhhhHHH
Q 014286           65 YHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGM  144 (427)
Q Consensus        65 ~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l  144 (427)
                      +....+.|.+|.+.+++|++.++.  +++.+++.++..++++++|+++||+|||+++..+.++.+++.+++.++++++.+
T Consensus         5 ~~~~~~~p~~~~~~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~   82 (377)
T PRK11102          5 LAIDMYLPALPVIAADFGVSAGSV--QMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQL   82 (377)
T ss_pred             hHHHHHhccHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHH
Confidence            344566789999999999876655  999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhccccccceeecccCCchhhhhcCChHHHHHHHHH------Hh---------C-CCch------------h
Q 014286          145 LLGRFVVGTGMGLGPTVAALYVTESPHWLYKKGRTAEAEAEFEK------LL---------G-GSHV------------K  196 (427)
Q Consensus       145 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~------~~---------~-~~~~------------~  196 (427)
                      ++.|+++|++.+...+....++.|.    ..+++..........      ..         . ....            .
T Consensus        83 ~~~~~l~g~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  158 (377)
T PRK11102         83 IYMRFLHGLAAAAASVVINALMRDM----FPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILA  158 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh----cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHH
Confidence            9999999999998877777766652    111111111111000      00         0 0000            0


Q ss_pred             --hHHHHHhhhhcCCCCC-------cchhHhhhcccchhHHHHHHHHHHhhhccchhHHHHhHHHHHHhcCCChh---HH
Q 014286          197 --SSLAELSKLDRGDDGD-------IVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSG---LA  264 (427)
Q Consensus       197 --~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~  264 (427)
                        ......++..++++++       ..++++.++++..+...+...+...   .......+....+.+..|.++.   ..
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~s~~~~g~~  235 (377)
T PRK11102        159 AALVFFFIPETLPKERRQPFHLRTTIRNFASLFRHKRVLGYMLASGFSFA---GMFSFLTAGPFVYIELNGVSPQNFGYY  235 (377)
T ss_pred             HHHHHHhCCccCcccccCCCChHHHHHHHHHHHcChHHHHHHHHHHHHHH---HHHHHHHcCHHHHHHHhCCCHHHHHHH
Confidence              0000001110111111       1233455666554443333222211   1112222222344455677765   45


Q ss_pred             HHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcccchhhh
Q 014286          265 NVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSL  344 (427)
Q Consensus       265 ~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (427)
                      .....++.+++.++.+++.||+|+|+.+..+..+..+..+.+......    +...+.......++..+.+.. .+....
T Consensus       236 ~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~~  310 (377)
T PRK11102        236 FALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALL----DLGFWALVVGVAAFVGCVSMI-SSNAMA  310 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHHHHHh-hHHHHH
Confidence            666777888999999999999999998888776544433332222110    111122222232333333322 222333


Q ss_pred             hccCcCCccchhhHHHHHHHHHH-HHHHHHHHHH
Q 014286          345 LLPEIFPSRIRAKAMAVCMSVHW-VINFFVGLLF  377 (427)
Q Consensus       345 ~~~~~~p~~~~g~~~g~~~~~~~-~g~~~~~~~~  377 (427)
                      ...|..| +.++++.++.+.... ++..+++.+.
T Consensus       311 ~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~  343 (377)
T PRK11102        311 VILDEFP-HMAGTASSLAGTLRFGIGAIVGALLS  343 (377)
T ss_pred             HHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            6677766 789999999887654 4455555443

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.90  E-value=2.1e-21  Score=179.29  Aligned_cols=337  Identities=15%  Similarity=0.087  Sum_probs=195.9

Q ss_pred             Hhhhhhccccccccchhhhh-hhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHhhHHHHHHHHHH-
Q 014286           58 LSSFLFGYHLGVVNEPLESI-SLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASIS-  135 (427)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~-  135 (427)
                      ...+........+.|.+|.+ .+++|.+..+.  |++.+.+.++..++++++|+++||+|||+.++.+++...++.... 
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~--g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~   86 (396)
T TIGR00882         9 LFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDT--GIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFF   86 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH
Confidence            33444444555667777765 45688765555  999999999999999999999999999999988777665544332 


Q ss_pred             --Hhh-----hhhHHHHHHHHHHhhhccccccceeecccCCchhh----h---hcCChHHHH-HHHHHHh-CCC------
Q 014286          136 --ATT-----RNLIGMLLGRFVVGTGMGLGPTVAALYVTESPHWL----Y---KKGRTAEAE-AEFEKLL-GGS------  193 (427)
Q Consensus       136 --~~~-----~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~----~---~~~~~~~~~-~~~~~~~-~~~------  193 (427)
                        .+.     +.+..+++.|++.|++.+...+....+..+..+-.    .   .......+. ..+.... ...      
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~f~  166 (396)
T TIGR00882        87 IYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSRNSNFEYGKARMFGCVGWALCASIAGILFSIDPQIVFW  166 (396)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhhhcccccchhhhhcccHHHHHHHHHhhhhccCchHHHH
Confidence              112     22344577789999988887777766655421100    0   000000000 0000000 000      


Q ss_pred             ---------------chhhH-HHHHhhh---hcCCCCCcchhHhhhcccchhHHHHHHHHHHhhhccchhHHHHhHHHHH
Q 014286          194 ---------------HVKSS-LAELSKL---DRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVF  254 (427)
Q Consensus       194 ---------------~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (427)
                                     ..++. .++..++   .++++++..+.++.+|++.++...+..+.............+.|.+...
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~  246 (396)
T TIGR00882       167 LGSGFALILMLLLMFAKPKAPSSATVANALGANASAFSLKLALELFRQRKFWMFVLYVVGVACVYDVFDQQFANFFTSFF  246 (396)
T ss_pred             HHHHHHHHHHHHHHHhCCCCchhhhhhcccccccCCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                           00000 0000000   0011122245677788877655444332222211111122223333332


Q ss_pred             HhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHH
Q 014286          255 KSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFV  331 (427)
Q Consensus       255 ~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (427)
                      ++.+.+..   .......+...++.+..+++.||+++|+.+.++..+.++...+.....+        .+.......+.+
T Consensus       247 ~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~--------~~~~~~~~~l~g  318 (396)
T TIGR00882       247 ATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATT--------ALEVVILKMLHA  318 (396)
T ss_pred             cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCC--------hHHHHHHHHHHH
Confidence            22233332   3455556677778889999999999999988888777776655443211        222333333333


Q ss_pred             HHHhhcccchhhhhccCcCCccchhhHHHH-HHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Q 014286          332 LTFALGAGPVPSLLLPEIFPSRIRAKAMAV-CMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVK  405 (427)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~-~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  405 (427)
                      .+.... ......+..+..|++.++++.+. .+....+|+++++.+.|.+.|..|++..|.+.+++.++..++..
T Consensus       319 ~~~~~~-~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~~  392 (396)
T TIGR00882       319 FEVPFL-LVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLISV  392 (396)
T ss_pred             HHHHHH-HHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence            332221 11223356677788888887776 67888999999999999999999999999998888877766554

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.89  E-value=1.4e-21  Score=184.14  Aligned_cols=336  Identities=15%  Similarity=0.094  Sum_probs=204.0

Q ss_pred             HHHhhhhhccccccccchhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhccc-----chhHH-HHHhhHHHH
Q 014286           56 ATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV-----GRRRA-FQLCALPMI  129 (427)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~-----Grr~~-l~~~~~~~~  129 (427)
                      .++.++..+......++.+|...++.|.+.++.  |.+ +.....+ ++.+++|+++||+     ||||. ++.+.++.+
T Consensus        17 ~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~i--g~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~   92 (491)
T PRK11010         17 LLILGFASGLPLALTSGTLQAWMTVENIDLKTI--GFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLL   92 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH--HHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHH
Confidence            344445556666677888999999988766665  665 4444444 6899999999999     99986 667778787


Q ss_pred             HHHHHHHhh---hhhHHHHHHHHHHhhhccccccceeecccCCchhhhhcCChHHHHHHH------H---------HHhC
Q 014286          130 IGASISATT---RNLIGMLLGRFVVGTGMGLGPTVAALYVTESPHWLYKKGRTAEAEAEF------E---------KLLG  191 (427)
Q Consensus       130 ~~~~~~~~~---~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~------~---------~~~~  191 (427)
                      ++..++++.   ++++.+.+.|++.|++.+...+...+++.|.    ..+++........      .         .+..
T Consensus        93 ~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~----~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~  168 (491)
T PRK11010         93 VAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDV----LPAEERGAGAAISVLGYRLAMLVSGGLALWLAD  168 (491)
T ss_pred             HHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            888887775   4788999999999999988877777777652    1111111111000      0         0000


Q ss_pred             -C-Cch------------hhHH-HHHhhhh---cCCCC----CcchhHhhhcccchhHHHHHHHHHHhhhccchhHHHHh
Q 014286          192 -G-SHV------------KSSL-AELSKLD---RGDDG----DIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYF  249 (427)
Q Consensus       192 -~-~~~------------~~~~-~~~~~~~---~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (427)
                       . .+.            .... ...++.+   +++++    ...++++.++++..+......++.....   .....+.
T Consensus       169 ~~~GWr~~f~i~a~l~ll~~l~~~~~~e~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~~~l~~~~~---~~~~~~~  245 (491)
T PRK11010        169 RYLGWQGMYWLMAALLIPCIIATLLAPEPTDTIPVPKTLEQAVVAPLRDFFGRNNAWLILLLIVLYKLGD---AFAMSLT  245 (491)
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHHhcCCCccccccccchhhhHHHHHHHHHcCcCHHHHHHHHHHHHHHH---HHHHHHH
Confidence             0 000            0000 0001110   00000    1124566776666554444333332221   1222233


Q ss_pred             HHHHHHhcCCChhH---HH-HHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHH
Q 014286          250 SSSVFKSAGLSSGL---AN-VFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVG  325 (427)
Q Consensus       250 ~~~~~~~~g~~~~~---~~-~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (427)
                      .+++.+..|++...   .. ....++.+++.+++|+++||+++|+.+..+.++.++..+.+......    ..+.+....
T Consensus       246 ~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~----~~~~~~l~~  321 (491)
T PRK11010        246 TTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSIT----DKNLYSMGA  321 (491)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc----cccHHHHHH
Confidence            44555667888773   22 23346778999999999999999887776665555444333221111    111122222


Q ss_pred             HHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Q 014286          326 GMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVK  405 (427)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  405 (427)
                      ...+.....+.+.. ...++..+..+++.+++..|+.+....+|..+++.+.|.+.|..||...|.+.+++++.+.+...
T Consensus       322 ~~~l~~~~~g~~~~-~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~  400 (491)
T PRK11010        322 AVFFENLCGGMGTA-AFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLL  400 (491)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence            22222222222222 23457778888889999999999999999999999999999999999989888888888766665


Q ss_pred             Hh
Q 014286          406 RN  407 (427)
Q Consensus       406 ~~  407 (427)
                      ..
T Consensus       401 ~~  402 (491)
T PRK11010        401 VC  402 (491)
T ss_pred             HH
Confidence            44

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.89  E-value=1.4e-21  Score=168.74  Aligned_cols=327  Identities=18%  Similarity=0.193  Sum_probs=224.4

Q ss_pred             HHHHHHhhhhhccccccccchhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHhhHHHHHHH
Q 014286           53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGA  132 (427)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~  132 (427)
                      .+.+....++.++......+.+|.+++.|+++..+.  +++...++.|+.+++++.|.+.+|+|+|+.+++|+.++++++
T Consensus        15 ~v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a--~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~   92 (422)
T COG0738          15 FVLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEA--SLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGA   92 (422)
T ss_pred             HHHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHH--HHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            445556667778888888999999999999876666  999999999999999999999999999999999999999999


Q ss_pred             HHHH---hhhhhHHHHHHHHHHhhhccccccceeecccCCchhhhhcCChHHHHHHHHHHhC------------------
Q 014286          133 SISA---TTRNLIGMLLGRFVVGTGMGLGPTVAALYVTESPHWLYKKGRTAEAEAEFEKLLG------------------  191 (427)
Q Consensus       133 ~~~~---~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~------------------  191 (427)
                      .++.   -..+|..++++-++.|.|.+...+.+..++..    +..++...+.......+.+                  
T Consensus        93 ~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~----lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~  168 (422)
T COG0738          93 ALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTL----LGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGV  168 (422)
T ss_pred             HHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHH----hCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhh
Confidence            9984   56789999999999999999999999888873    1111000000000000000                  


Q ss_pred             ---CC-------------chhh----------------HHHHHhhhh---cCCCCC-cchhHhhhcccchhHHHHHHHHH
Q 014286          192 ---GS-------------HVKS----------------SLAELSKLD---RGDDGD-IVKFEELLYGRHFRVVFIGSTLF  235 (427)
Q Consensus       192 ---~~-------------~~~~----------------~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  235 (427)
                         ..             .++.                ...+.++.+   +++.+. .....+++++|+++...++.+++
T Consensus       169 ~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~gvl~~FlY  248 (422)
T COG0738         169 ALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVAAPSLGASGSAGLSSLFQNKHLRLGVLAIFLY  248 (422)
T ss_pred             hhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCcccccccccccchHHHHHhChHHHHHHHHHHHH
Confidence               00             0000                000000101   111111 11467889999999888888877


Q ss_pred             HhhhccchhHHHHhHHHHHHh-cCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhh
Q 014286          236 ALQQLSGINAIFYFSSSVFKS-AGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASS  311 (427)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~-~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~  311 (427)
                      ...+....    .+.+.+..+ .|.+..   ........+.++|++++.++..|+...+.+....++..+.++...+...
T Consensus       249 VG~Eva~g----sfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~g  324 (422)
T COG0738         249 VGAEVAIG----SFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIGG  324 (422)
T ss_pred             HhHHHHHH----HHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            77554444    444444444 555544   5667778888999999999999999988888777666655555555433


Q ss_pred             cCCCCCchhHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHH
Q 014286          312 SYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYS  391 (427)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~  391 (427)
                               ...+....+.+.+.+ ...|...+...+..| ++ ....|..-....+|+++.|++.|++.|+.|....+.
T Consensus       325 ---------~v~~~~l~~ig~F~s-imfPTIfslal~~l~-~~-ts~~s~~l~maivGGAiiP~l~G~i~d~~g~~~~~~  392 (422)
T COG0738         325 ---------VVALYALFLIGLFNS-IMFPTIFSLALKNLG-EH-TSVGSGLLVMAIVGGAIIPPLQGVIADMFGIQLTFL  392 (422)
T ss_pred             ---------hHHHHHHHHHHHHhH-HHHHHHHHHHHhccC-cc-ccccceeeeeheecchHHHHHHHHHHHhhhhHHHHH
Confidence                     233444444555444 445666668888888 43 334444555667899999999999999999887777


Q ss_pred             HHHHHHHHHH
Q 014286          392 IFGTFCLMAV  401 (427)
Q Consensus       392 ~~~~~~~~~~  401 (427)
                      ....+|.+..
T Consensus       393 ~~pllc~lyV  402 (422)
T COG0738         393 IVPLLCYLYV  402 (422)
T ss_pred             HHHHHHHHHH
Confidence            6666666555

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.89  E-value=5.1e-21  Score=175.74  Aligned_cols=320  Identities=14%  Similarity=0.116  Sum_probs=195.2

Q ss_pred             hhhccccccccchhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchh----HHHHHhhHHHHHHHHHHH
Q 014286           61 FLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRR----RAFQLCALPMIIGASISA  136 (427)
Q Consensus        61 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr----~~l~~~~~~~~~~~~~~~  136 (427)
                      +......+...|.+|.+.+|+|.|.++.  |++.+++.++..++++++|+++||+|||    +.+.++..+.  ....+.
T Consensus        14 ~~~~~~~g~~~p~l~~~l~~~g~s~~~i--G~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~   89 (382)
T PRK11128         14 FGYFFAYGVFLPFWSVWLKGQGYTPETI--GLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWF   89 (382)
T ss_pred             HHHHHHHHHHhhhHHHHHHhcCCCHHHH--HHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHH
Confidence            3333455778899999999999866655  9999999999999999999999999984    3333222222  223344


Q ss_pred             hhhhhHHHHHHHHHHhhhccccccceeecccCCchhhhhcCC---hHHHHHHHHHHhC------------CC--------
Q 014286          137 TTRNLIGMLLGRFVVGTGMGLGPTVAALYVTESPHWLYKKGR---TAEAEAEFEKLLG------------GS--------  193 (427)
Q Consensus       137 ~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~------------~~--------  193 (427)
                      .+++++.+++.|++.|++.+...+...+++.+   |..++++   ..+....+....+            ..        
T Consensus        90 ~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~---~~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~  166 (382)
T PRK11128         90 GAHSFWLLFVAIGLFNLFFSPLVPLTDALANT---WQKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTA  166 (382)
T ss_pred             hcccHHHHHHHHHHHHHHHcccccHHHHHHHH---HHhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHH
Confidence            56889999999999999988887766655443   1111111   0111000110000            00        


Q ss_pred             -----chhhH-HHHHhhhhc-CC--CCCcchhHhhhcccchhHHHHHHHHHHhhhccchhHHHHhHHHHHHhcCCChh--
Q 014286          194 -----HVKSS-LAELSKLDR-GD--DGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSG--  262 (427)
Q Consensus       194 -----~~~~~-~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--  262 (427)
                           ..... .++.+++++ ++  ++...++++++|++.++...+..++......    ....+.+.+.++.|.+..  
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~g~s~~~~  242 (382)
T PRK11128        167 GVASMLLGQLLRPTIMPQGESRQQESAGWPAWKALLKEPTVWRFLLCVSLLQGSHA----AYYGFSAIYWQAAGYSASTI  242 (382)
T ss_pred             HHHHHHHHHHccCCCCCccccccccccccchHHHHHcChhHHHHHHHHHHHHHHhH----hHHHHHHHHHHHCCCCHhHH
Confidence                 00000 000000000 01  1113467888888887766555554443222    222233444456777765  


Q ss_pred             -HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcccch
Q 014286          263 -LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPV  341 (427)
Q Consensus       263 -~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (427)
                       .......+..++..++.+++.||+++|+.+..+....+++...+....        +.+..++..++.+.+++.... .
T Consensus       243 g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~g~~~~~~~~-~  313 (382)
T PRK11128        243 GYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTT--------ALPWLIVIQILHCGTFTVCHL-A  313 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhh--------hHHHHHHHHHHHHHHHHHHHH-H
Confidence             344455566777788899999999999998888887777666554332        223444445555555554333 3


Q ss_pred             hhhhccCcCCccchhhHHHHHHHH-HHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Q 014286          342 PSLLLPEIFPSRIRAKAMAVCMSV-HWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVA  402 (427)
Q Consensus       342 ~~~~~~~~~p~~~~g~~~g~~~~~-~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~  402 (427)
                      ...+..+. +++++++..++.+.. ...|..++|.+.|.+.|..|+. .+...+++.+++.+
T Consensus       314 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~~-~~~~~~~~~~~~~~  373 (382)
T PRK11128        314 AMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGAG-VFWVMALVALPALF  373 (382)
T ss_pred             HHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHHHH
Confidence            34466676 556678899988744 4567799999999999998874 66666665554443

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.88  E-value=1.4e-20  Score=173.46  Aligned_cols=326  Identities=14%  Similarity=0.125  Sum_probs=177.8

Q ss_pred             hhhhccccccccchhhh-hhhccCCCCchhHHHHHHHHHHH-HHHHHHHhHHhhhcccchhHHH-HHhhHHHHHHHHHHH
Q 014286           60 SFLFGYHLGVVNEPLES-ISLDLGFNGNTLAEGLVVSMCLG-GAFIGSTLSGWIADGVGRRRAF-QLCALPMIIGASISA  136 (427)
Q Consensus        60 ~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~g~~~s~~~l-~~~~~~~~~G~l~dr~Grr~~l-~~~~~~~~~~~~~~~  136 (427)
                      .++..+......|.+|. +.+++|++.++.  |++.+.+.+ +..+++++.|+ +||+||||.+ ..+.++.+++..+.+
T Consensus        24 ~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~--g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~  100 (393)
T PRK15011         24 AFLTGIAGALQTPTLSIFLTDEVHARPAMV--GFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFA  100 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHH
Confidence            44444555556677765 578899876665  998776655 55566655555 9999999875 556676678888889


Q ss_pred             hhhhhHHHHHHHHHHhhhccccccceeecccCCchhhhhcCChHH-H------HHHHHHHhCCC---------chhh---
Q 014286          137 TTRNLIGMLLGRFVVGTGMGLGPTVAALYVTESPHWLYKKGRTAE-A------EAEFEKLLGGS---------HVKS---  197 (427)
Q Consensus       137 ~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~~~~~-~------~~~~~~~~~~~---------~~~~---  197 (427)
                      ++++++.+++.+.+.|...+...+....++.+   |..++++... .      ...+....+..         ..+.   
T Consensus       101 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~  177 (393)
T PRK15011        101 WNRNYFVLLFVGVFLSSFGSTANPQMFALARE---HADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYL  177 (393)
T ss_pred             HhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH---HhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHH
Confidence            99999988766555444444555555555544   1111211110 0      00111111110         0000   


Q ss_pred             ---------H---HHHHhhhhcCCCCCcchhHhhhcccc-hhHHHHHHHHHHhhhccchhHHHHhHHHH-HHhcCCChh-
Q 014286          198 ---------S---LAELSKLDRGDDGDIVKFEELLYGRH-FRVVFIGSTLFALQQLSGINAIFYFSSSV-FKSAGLSSG-  262 (427)
Q Consensus       198 ---------~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~-  262 (427)
                               .   ....++.++++++.+.+.+...++++ .+..+.......    ........+.|.+ .++.+.+.. 
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~p~~l~~~~~~~~~~  253 (393)
T PRK15011        178 SAAVAFIVCGVMVWLFLPSMRKELPLATGTLEAPRRNRRDTLLLFVICTLMW----GTNSLYIINMPLFIINELHLPEKL  253 (393)
T ss_pred             HHHHHHHHHHHHHHhhcCccCCCCccccccccccccccccHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHcCCCHHH
Confidence                     0   00011111111110111111111211 121111111111    1222223344444 355677765 


Q ss_pred             --HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcccc
Q 014286          263 --LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGP  340 (427)
Q Consensus       263 --~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (427)
                        .......+..+++.++.|+++||++||+.+..+.....+....+....        ..+..+....+.....+... +
T Consensus       254 ~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~~l~~~~~g~~~-~  324 (393)
T PRK15011        254 AGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAH--------SPAILLGLQLLNAIYIGILG-G  324 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHh--------hHHHHHHHHHHHHHHHHHHH-H
Confidence              333444556677889999999999999877766554444333222111        11222222222222222221 2


Q ss_pred             hhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Q 014286          341 VPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVK  405 (427)
Q Consensus       341 ~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  405 (427)
                      ....+..|.+|+ +++++.++++...++|..++|.+.|.+.|..||+..+.+.+++.+++.++.+
T Consensus       325 ~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~  388 (393)
T PRK15011        325 IGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLL  388 (393)
T ss_pred             HHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            223467788884 5999999999999999999999999999999999888877777766655554

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=9e-23  Score=174.79  Aligned_cols=312  Identities=13%  Similarity=0.066  Sum_probs=203.4

Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHhhHHHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccce
Q 014286           83 FNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVA  162 (427)
Q Consensus        83 ~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~  162 (427)
                      .+.++.++|++.+++.+.+.+.+++.|.+.||+|+|-.+++|++.+..+++++++.++++++++.|.+||+|.+...+.+
T Consensus       101 ~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsg  180 (464)
T KOG3764|consen  101 LDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSG  180 (464)
T ss_pred             ccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhh
Confidence            34456667999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eecccCCchhhhhcCChHHHHHHHHHHhCCCch----------------------------hh--HHHHHhhhh--cCCC
Q 014286          163 ALYVTESPHWLYKKGRTAEAEAEFEKLLGGSHV----------------------------KS--SLAELSKLD--RGDD  210 (427)
Q Consensus       163 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~--~~~~~~~~~--~~~~  210 (427)
                      .+++++.   +....++..++.......+....                            ..  ..--.+..+  +++.
T Consensus       181 lamlAd~---f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~~~~~  257 (464)
T KOG3764|consen  181 LAMLADV---FPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMDPDST  257 (464)
T ss_pred             HHHHHHH---cccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccCcccc
Confidence            9999873   22222234443333322211100                            00  000011111  1134


Q ss_pred             CCcchhHhhhcccchhHHHHHHHHHHhhhccchhHHHHhHHHHHHhcC---CChhHHHHHHHHHHHHHHHhHhhhhcccC
Q 014286          211 GDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAG---LSSGLANVFVGIANLLGSVVAMVLMDKLG  287 (427)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~~~~~~~~~~~~~~~~~~g~l~d~~g  287 (427)
                      .+..+++++++++..+......   .....+....-+.+.....+...   ...++.+....+...++..+.|.+.||++
T Consensus       258 ~~~~~~~~Ll~dP~I~~~agai---~~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~  334 (464)
T KOG3764|consen  258 EQGTPMWSLLMDPYILLIAGAI---TFSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYP  334 (464)
T ss_pred             ccCccHHHHHhCchHhhhhcch---hhccchHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhcC
Confidence            4456688888888765433322   22222222222333333334333   23346778888999999999999999999


Q ss_pred             ccchh--hhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcccchhhhhccCcCCcc---chhhHHHHH
Q 014286          288 RKALL--QWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSR---IRAKAMAVC  362 (427)
Q Consensus       288 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~g~~~g~~  362 (427)
                      ..+.+  ..+.+...++.....+...     ....|.......+.+........|... +..|.-..+   ..|...++.
T Consensus       335 ~~~wl~~~~gl~~~G~~~~~iP~~~~-----~~~L~vp~~~l~~~i~~~dasl~P~l~-~lvd~rh~s~~~vYGsVyaIa  408 (464)
T KOG3764|consen  335 HLRWLLSLGGLATVGVSSGPIPFATS-----IAQLWVPNFGLGFGIGLADASLIPTLG-YLVDPRHVSGFNVYGSVYAIA  408 (464)
T ss_pred             chhHHHHHHHHHHHHHHhchhHhhhh-----HHHHhhhhHHHHHHHHHHHHHHhhhhH-HhcchhhccccceeeeHHHHH
Confidence            43322  2333333322222222221     111233333333333333444456665 455544444   679999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHH
Q 014286          363 MSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKR  406 (427)
Q Consensus       363 ~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  406 (427)
                      .....+|.++||.++|.+.+..|+.+...+.+...++-+-+...
T Consensus       409 d~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyapvl~l  452 (464)
T KOG3764|consen  409 DAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAPVLLL  452 (464)
T ss_pred             HHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999888888887776655433

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.88  E-value=1.2e-21  Score=179.31  Aligned_cols=298  Identities=17%  Similarity=0.125  Sum_probs=181.4

Q ss_pred             HHHHhhhhhccccccccchhhh-hhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHhhHHHHHHHH
Q 014286           55 VATLSSFLFGYHLGVVNEPLES-ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGAS  133 (427)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~  133 (427)
                      ..+++.+..........+.+|. +++++|++.++.  +++.+++.+++.++++++|+++||+|||++++.+.++..++.+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~   82 (366)
T TIGR00886         5 FSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQL--GNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCL   82 (366)
T ss_pred             HHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHh--hHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence            3444555555566677888995 999999876666  9999999999999999999999999999999999999999999


Q ss_pred             HHHhhh-hhHHHHHHHHHHhhhccccccceeecccCCchhhhhcCChHHHHHH--------------HH-HHhC------
Q 014286          134 ISATTR-NLIGMLLGRFVVGTGMGLGPTVAALYVTESPHWLYKKGRTAEAEAE--------------FE-KLLG------  191 (427)
Q Consensus       134 ~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--------------~~-~~~~------  191 (427)
                      ++++++ +++.+++.|+++|++.+.. +....++.|.   . .++++..+...              +. .+..      
T Consensus        83 ~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~---~-~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~  157 (366)
T TIGR00886        83 WAGLAVQSYSVLLLLRLFIGIAGGSF-ASCMPWISFF---F-PKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGA  157 (366)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHhchhh-HhHHHHHHHh---c-CHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcc
Confidence            999999 9999999999999986543 4444555431   1 11111110000              00 0000      


Q ss_pred             -------CCchh-h---------------HHHHHhhh-hcCCCCCcc------------hhHhhhcccchhHHHHHHHHH
Q 014286          192 -------GSHVK-S---------------SLAELSKL-DRGDDGDIV------------KFEELLYGRHFRVVFIGSTLF  235 (427)
Q Consensus       192 -------~~~~~-~---------------~~~~~~~~-~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~  235 (427)
                             ....- .               ..++.++. +++++.+..            ..++.++++..+...+...+.
T Consensus       158 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (366)
T TIGR00886       158 GLPAHLAWGWAFVIVPAGILLLPALLIFFVGADTPPGKPATGKLSFKGARWSVGTGALGDQLKVFRDRHTWILALLYSVT  237 (366)
T ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhcccCCcccccchhcccccccccccchhHHHHHHHHhccchhhHHHHHHHH
Confidence                   00000 0               00000000 000000000            445566666665544443333


Q ss_pred             HhhhccchhHHHHhHHHHH-HhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhh
Q 014286          236 ALQQLSGINAIFYFSSSVF-KSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASS  311 (427)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~-~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~  311 (427)
                      ...    ......+.+.+. +..|.+..   .......+..+++.++.|++.||+|+|+.+..+......+..++.....
T Consensus       238 ~~~----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~  313 (366)
T TIGR00886       238 FGS----FLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLV  313 (366)
T ss_pred             HHH----HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCC
Confidence            322    222333344344 45676655   4555667778889999999999999988777776665555544443221


Q ss_pred             cCCCCCchhHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHH
Q 014286          312 SYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVI  369 (427)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g  369 (427)
                          .+...+.......+.....+.+.. .......+..| +++|++.|+.+..+++|
T Consensus       314 ----~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~-~~~g~~~g~~~~~~~~g  365 (366)
T TIGR00886       314 ----SPLSLAVFIVLFVALFFFSGAGNG-STFALVPHIFR-RATGAVSGLVGAIGNLG  365 (366)
T ss_pred             ----CcchHHHHHHHHHHHHHHhccccc-hhhhcchhhch-hhcccHHHHHHHhccCC
Confidence                000222333333333444443333 34447778877 68999999999988765

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.87  E-value=9.8e-21  Score=177.00  Aligned_cols=319  Identities=18%  Similarity=0.187  Sum_probs=210.4

Q ss_pred             ccccchhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHhhHHHHHHHHHHHhh-----hhhH
Q 014286           68 GVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT-----RNLI  142 (427)
Q Consensus        68 ~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~  142 (427)
                      .+....++-+..+.  +.+....+++.++..+...+.+++.|.++||++|||+++.+-++..+..+..++.     .+.+
T Consensus        27 ~~~~va~~wlv~~l--t~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~  104 (524)
T PF05977_consen   27 WMQTVALAWLVTQL--TGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPW  104 (524)
T ss_pred             HHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHH
Confidence            33344555555444  4577777999999999999999999999999999999999998877665554432     4788


Q ss_pred             HHHHHHHHHhhhccccccceeecccCCchhhhhcCChHHHHHHHHH------HhCCC------------c---------h
Q 014286          143 GMLLGRFVVGTGMGLGPTVAALYVTESPHWLYKKGRTAEAEAEFEK------LLGGS------------H---------V  195 (427)
Q Consensus       143 ~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~------~~~~~------------~---------~  195 (427)
                      .+++.-++.|++.+...|.-.++++|    +..+++...+......      ..+..            .         .
T Consensus       105 ~Ll~~~fl~g~~~a~~~PA~~A~ip~----lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl  180 (524)
T PF05977_consen  105 LLLILTFLLGIGSAFFNPAWQAIIPE----LVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFL  180 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH----hccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999987    4444444433322111      11110            0         0


Q ss_pred             --hhHHHHHhhhhcCCCCC--------cchhHhhhcccchhHHHHHHHHHHhhhccchhHHHHhHHHHH-HhcCCChh--
Q 014286          196 --KSSLAELSKLDRGDDGD--------IVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVF-KSAGLSSG--  262 (427)
Q Consensus       196 --~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~--  262 (427)
                        .......+...++++..        +..++-+.+++..+..++...+..+...    .....+|.+. +..+.++.  
T Consensus       181 ~~i~~l~~~~~~~~~~~~~~e~~~~~l~~G~ryv~~~~~l~~~l~~~~~~~l~~~----a~~aLlPl~a~~~l~~~a~~y  256 (524)
T PF05977_consen  181 ISILALLRWKPPPPPSSLPRERFFSALREGLRYVRSSPPLRSVLLRSFLFNLFAS----AVWALLPLFARDVLGGGASGY  256 (524)
T ss_pred             HHHHHHHHccccccccccchhhhhhhHHHHHHHHhcchHHHHHHHHHHHHHHhhh----HHHHhhhHHHHHHhCCcHHHH
Confidence              00000111111111111        1223333445555544443333333222    1222344443 34565555  


Q ss_pred             -HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcccch
Q 014286          263 -LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPV  341 (427)
Q Consensus       263 -~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (427)
                       +.....+++.++|.++.+++.+|+++++.+..+.++.+++.+.+++..+        .+.....+++.+.+..... ..
T Consensus       257 Gll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~--------~~~~~~~l~l~G~~~~~~~-~~  327 (524)
T PF05977_consen  257 GLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPS--------FWLALIALFLAGAAWIIAN-SS  327 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchH--------HHHHHHHHHHHHHHHHHHH-HH
Confidence             6777888999999999999999999988888888877777766665433        2344444555555544433 33


Q ss_pred             hhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Q 014286          342 PSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVK  405 (427)
Q Consensus       342 ~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  405 (427)
                      ..+..++..|++.||++.+++++....+..+|..+.|.+.+..|....+.+.++..+++.++..
T Consensus       328 ~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~  391 (524)
T PF05977_consen  328 LNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIAL  391 (524)
T ss_pred             HHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence            4457888899999999999999999999999999999999999998888777766655555543

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.87  E-value=4.9e-21  Score=175.93  Aligned_cols=316  Identities=15%  Similarity=0.128  Sum_probs=203.3

Q ss_pred             hhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHhhHHHHHHHHHHHhhh--hhHHHHHHHHHHhhhc
Q 014286           78 SLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTR--NLIGMLLGRFVVGTGM  155 (427)
Q Consensus        78 ~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~  155 (427)
                      ..+++++.++  .|++.+.++.|+.+++++.|+++||||-|+++..+.++.++++++...+.  +++.+++.|++||++.
T Consensus        65 ~~~~~ws~~~--k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~  142 (466)
T KOG2532|consen   65 AGEYDWSSTE--KGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQ  142 (466)
T ss_pred             CceecCCHHH--HHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHH
Confidence            3456665444  49999999999999999999999999999999999999999999998875  5568899999999999


Q ss_pred             cccccceeecccC------Cchh---------------------hhhc-CChHHHHHH----------HH-HHhCCC---
Q 014286          156 GLGPTVAALYVTE------SPHW---------------------LYKK-GRTAEAEAE----------FE-KLLGGS---  193 (427)
Q Consensus       156 g~~~~~~~~~i~~------~~~~---------------------~~~~-~~~~~~~~~----------~~-~~~~~~---  193 (427)
                      |..+++...+...      ..++                     +... ..++...-.          +- .+....   
T Consensus       143 g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~  222 (466)
T KOG2532|consen  143 GVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSK  222 (466)
T ss_pred             hHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence            9999988877662      0000                     0000 011100000          00 000000   


Q ss_pred             ---chhhHHHHHhhhhcCCC---CCcchhHhhhcccchhHHHHHHHHHHhhhccchhHHHHhHHHHH-HhcCCChh---H
Q 014286          194 ---HVKSSLAELSKLDRGDD---GDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVF-KSAGLSSG---L  263 (427)
Q Consensus       194 ---~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~---~  263 (427)
                         ...+|.+.+++...+++   +.+.+++++++++..|..+++.+....    ....+..|.|.++ +.++++..   +
T Consensus       223 h~~is~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~----~~~~l~~y~PtY~~~VL~f~v~~~G~  298 (466)
T KOG2532|consen  223 HPNISEKELKYIEKGKSEAHVKKKPPVPYKAILTSPPVWAIWISAFGGNW----GFYLLLTYLPTYLKEVLGFDVRETGF  298 (466)
T ss_pred             CCCCCHHHHHHHHhcccccccCCCCCCCHHHHHcCHHHHHHHHHHHHHHH----HHHHHHHHhhHHHHHHhCCChhhhhH
Confidence               01122333332222221   136789999999988877776655544    3445555555555 44666654   7


Q ss_pred             HHHHHHHHHHHHHHhHhhhhcccCcc---------chhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHH
Q 014286          264 ANVFVGIANLLGSVVAMVLMDKLGRK---------ALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTF  334 (427)
Q Consensus       264 ~~~~~~~~~~~~~~~~g~l~d~~g~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (427)
                      ..++..+...+..+++|.++||..+|         ..-.++....+++++.+.+...      ...+..++++.+.....
T Consensus       299 ~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~------~~~~~a~~~l~~~~~~~  372 (466)
T KOG2532|consen  299 LSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSD------EHRLLAVILLTIAIGLS  372 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCC------CcchHHHHHHHHHHHHc
Confidence            78888899999999999999987552         2223344444444444443321      11122222222222222


Q ss_pred             hhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHH---HhccchhHHHHHHHHHHHHHHHHHh
Q 014286          335 ALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLE---QLGPQLLYSIFGTFCLMAVAFVKRN  407 (427)
Q Consensus       335 ~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~---~~g~~~~~~~~~~~~~~~~~~~~~~  407 (427)
                      + ...+-...-..+..| ++.+..+|+.+.+..+.++++|.+.|.+..   ...|+.+|++.+++.+++.++..++
T Consensus       373 g-~~~~Gf~~~~~~~ap-q~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f  446 (466)
T KOG2532|consen  373 G-FNISGFYKNHQDIAP-QHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFF  446 (466)
T ss_pred             c-cchhhhHhhhhhccc-hHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence            2 222222212333344 889999999999999999999999999983   3469999999999988887665444

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.87  E-value=1.3e-20  Score=197.12  Aligned_cols=312  Identities=15%  Similarity=0.089  Sum_probs=192.3

Q ss_pred             cchhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHhhHHHHHHHHHHH---hhhhhHHHHHH
Q 014286           71 NEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISA---TTRNLIGMLLG  147 (427)
Q Consensus        71 ~~~~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~---~~~~~~~l~~~  147 (427)
                      ..+.+.+..+++.+.+....+++.+++.+++.++++++|+++||+|||++++++.++..++.++..   .+++++.++++
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  109 (1146)
T PRK08633         30 ILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAV  109 (1146)
T ss_pred             HHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence            344556667777766666679999999999999999999999999999999998877666655544   45789999999


Q ss_pred             HHHHhhhccccccceeecccCCchhhhhcCChHHHHHHH--------------H-HHhCC----------Cch-------
Q 014286          148 RFVVGTGMGLGPTVAALYVTESPHWLYKKGRTAEAEAEF--------------E-KLLGG----------SHV-------  195 (427)
Q Consensus       148 r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--------------~-~~~~~----------~~~-------  195 (427)
                      |+++|++.+...+...+++.|.    ...++...+....              . .+...          ...       
T Consensus       110 r~l~G~~~~~~~~~~~~~i~~~----~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  185 (1146)
T PRK08633        110 TFLLGAQSAIYSPAKYGIIPEL----VGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVL  185 (1146)
T ss_pred             HHHHHHHHHhhchHHHhhhHHh----cCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHH
Confidence            9999999999999888888862    1111111110000              0 00000          000       


Q ss_pred             ----------hhHHHHHhhhhcCC--CC---C----cchhHhhhcccchhHHHHHHHHHHhhhccchhHHHHhHHHHHHh
Q 014286          196 ----------KSSLAELSKLDRGD--DG---D----IVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKS  256 (427)
Q Consensus       196 ----------~~~~~~~~~~~~~~--~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (427)
                                ....++.++.....  +.   .    ...++.+++++..+..++...+..+..   .....++.+++.+.
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~  262 (1146)
T PRK08633        186 LAVAVLGLIFAYRLPKVPAAAPEVFDKKKYLFPKLLWRNLKLLRSDRVLWLAIIGLSYFWFIS---QLAQANFPAYAKEV  262 (1146)
T ss_pred             HHHHHHHHHHHhcCcCCCCCCcccccccccccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH---HHHHHhhHHHHHHH
Confidence                      00000000000000  00   0    122445566665555444443333221   22222333444455


Q ss_pred             cCCChh----HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHH
Q 014286          257 AGLSSG----LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVL  332 (427)
Q Consensus       257 ~g~~~~----~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (427)
                      .|.+..    +......++.+++.++.+++.||+++++.+.++.++.+++.+++.+..+        .+..++..++++.
T Consensus       263 ~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~g~  334 (1146)
T PRK08633        263 LGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPS--------LASVLVLFFLFGF  334 (1146)
T ss_pred             hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhh--------HHHHHHHHHHHHH
Confidence            666544    4566677888899999999999999988888777777766665554321        2233344444444


Q ss_pred             HHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cchhHHHHHHHHHH
Q 014286          333 TFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLG--PQLLYSIFGTFCLM  399 (427)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g--~~~~~~~~~~~~~~  399 (427)
                      +.+.... ...+++.+..|++.||+++|+.+++.+++.++++.+.+.+.. .+  +...+.+.+.+.++
T Consensus       335 ~~~~~~~-~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~  401 (1146)
T PRK08633        335 SAGLFIV-PLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSG-LGLSPAGLFYLIALVTLI  401 (1146)
T ss_pred             HHHHhhH-HHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHH-hccCHHHHHHHHHHHHHH
Confidence            4443333 344588899999999999999999999999888777665543 33  33344444444333

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.87  E-value=4.1e-20  Score=172.02  Aligned_cols=341  Identities=16%  Similarity=0.168  Sum_probs=224.6

Q ss_pred             hHHHHHHHHHHhhhhhccccccccchhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHhhHH
Q 014286           48 LSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALP  127 (427)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~  127 (427)
                      +-|.+++..++......-....++...+.++++++-+.++.  +|+.++......+..|+.+.+.||||.|++.+.|.++
T Consensus        43 ~gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~--~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v  120 (509)
T KOG2504|consen   43 WGWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQI--AWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLV  120 (509)
T ss_pred             eeeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHH--HHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHH
Confidence            34555555555554443334455678899999999877775  8999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhHHHHHH-HHHHhhhccccccceeecccCCchhhhhcCC----------------------------
Q 014286          128 MIIGASISATTRNLIGMLLG-RFVVGTGMGLGPTVAALYVTESPHWLYKKGR----------------------------  178 (427)
Q Consensus       128 ~~~~~~~~~~~~~~~~l~~~-r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~~----------------------------  178 (427)
                      .+++.++.++++++|++++. -++.|+|.|..+..+..++..   |+.+++.                            
T Consensus       121 ~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~---YF~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~  197 (509)
T KOG2504|consen  121 AALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGT---YFEKKRALATGIAVSGTGVGTVVFPPLLKYLLSKY  197 (509)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhh---HhHHHHHHHHhhhhccCCcceeeHHHHHHHHHHHh
Confidence            99999999999999887655 578899999888887777762   2222111                            


Q ss_pred             -hHHHHHHHHH----------HhCCCchhh-HH--------------------HHH------------------hhhhcC
Q 014286          179 -TAEAEAEFEK----------LLGGSHVKS-SL--------------------AEL------------------SKLDRG  208 (427)
Q Consensus       179 -~~~~~~~~~~----------~~~~~~~~~-~~--------------------~~~------------------~~~~~~  208 (427)
                       +.........          ......... +.                    ...                  ++.+++
T Consensus       198 G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (509)
T KOG2504|consen  198 GWRGALLIFGGISLNVLVAGALLRPLSPPKKPNEEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDK  277 (509)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCchhhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCCcc
Confidence             1111111100          000000000 00                    000                  000000


Q ss_pred             CC--CCcchh----HhhhcccchhHHHHHHHHHHhhhccchhHHHHhHHHHHHhcCCChh---HHHHHHHHHHHHHHHhH
Q 014286          209 DD--GDIVKF----EELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSG---LANVFVGIANLLGSVVA  279 (427)
Q Consensus       209 ~~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~  279 (427)
                      ..  ..+...    .++++++.+..+.+...+..+    .+.....+++.+.+..+++..   ....+.++..++++++.
T Consensus       278 ~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~----g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~  353 (509)
T KOG2504|consen  278 WRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYL----GFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIIL  353 (509)
T ss_pred             ccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHH----HHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhh
Confidence            00  011111    356666555544444433333    455666677777778888776   67778889999999999


Q ss_pred             hhhhcccCcc--chhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhh
Q 014286          280 MVLMDKLGRK--ALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAK  357 (427)
Q Consensus       280 g~l~d~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~  357 (427)
                      |++.|+...+  ....++.+..+++...+......        +.......+++...+ .........+.|+.+.++-..
T Consensus       354 G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~--------~~l~~~~~~fG~~~g-~~~~l~~~i~~~~~g~~~l~~  424 (509)
T KOG2504|consen  354 GLLADKPGIRALVLFLLTLLIAGLARLFLPFATTY--------VGLIVFSILFGFCVG-SFSSLTPVILVDLVGLEKLSN  424 (509)
T ss_pred             hhhcCccccchHHHHHHHHHHHHHHHHHHHHhccH--------HHHHHHHHHHHHHHH-HHHHHHHHHHHHHcChhhcch
Confidence            9999998743  34444555555554444433221        223333333333332 223444447889999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHHHHHH
Q 014286          358 AMAVCMSVHWVINFFVGLLFLRLLEQLG-PQLLYSIFGTFCLMAVAFVKR  406 (427)
Q Consensus       358 ~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~  406 (427)
                      +.|+...+..++..+||++.|.+.|..| |...|...+++.+++..+...
T Consensus       425 a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~  474 (509)
T KOG2504|consen  425 AYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLI  474 (509)
T ss_pred             HHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHH
Confidence            9999999999999999999999999988 888898888888777755543

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.86  E-value=4.6e-19  Score=150.94  Aligned_cols=336  Identities=17%  Similarity=0.146  Sum_probs=223.9

Q ss_pred             HHHHHHHhhhhhccccccccchhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHhhHHHHHH
Q 014286           52 HVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIG  131 (427)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~  131 (427)
                      .+..+.+..+-.--..+.++|+++++++|+|+|.+..  |++.++..++..+.+++..+++.|+|.++.+..++++..++
T Consensus        13 li~gIvlia~NLR~~itsvgPLL~~Ir~~~gls~s~a--GlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G   90 (395)
T COG2807          13 LLAGIVLIAFNLRPAITSVGPLLDEIRQDLGLSFSVA--GLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAG   90 (395)
T ss_pred             HHHHHHHHHhccchhhhhhhhhHHHHHHHhcccHHHH--HHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHH
Confidence            3444444445555667888999999999999987777  99999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhHHHHHHHHHHhhhccccccceeecccCC-chh-------------------------hhhcC-ChHHHHH
Q 014286          132 ASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTES-PHW-------------------------LYKKG-RTAEAEA  184 (427)
Q Consensus       132 ~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~-~~~-------------------------~~~~~-~~~~~~~  184 (427)
                      .++-... +.+.++.+-.+.|.|.+...+..+..+.+. |+-                         +..+. .+..+..
T Consensus        91 ~~iR~~~-~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~  169 (395)
T COG2807          91 ILIRSLG-GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALG  169 (395)
T ss_pred             HHHHhcc-cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHH
Confidence            9999887 888899999999999998888888877741 110                         00000 1111111


Q ss_pred             HHHHHhCCCchhhHHHH-HhhhhcCCCCCcchhHhhhcccchhHHHHHHHHHHhhhccchhHHHHhHHHHHHhcCCChh-
Q 014286          185 EFEKLLGGSHVKSSLAE-LSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSG-  262 (427)
Q Consensus       185 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-  262 (427)
                      .......... ..-.+. .++.....+.+..+-..++|++.-|...+-+.+    +...++....|+|.+..+.|++.. 
T Consensus       170 ~WAl~allAl-~~WlPq~~r~~~~~~~~~~~~~~~vw~~~~aW~vtLfmGl----qS~~~Y~~~~WLP~ili~~G~sa~~  244 (395)
T COG2807         170 FWALLALLAL-LIWLPQALREQAASIATKLVSVRKVWRSPLAWQVTLFMGL----QSLLYYIVIGWLPAILIDRGLSAAE  244 (395)
T ss_pred             HHHHHHHHHH-HHHhhhcccccccccccccccccccccCchhHHHHHHHHh----hHHHHHHHHHHHHHHHHHcCCCHHH
Confidence            1111000000 000111 111011111222233457777766654443333    333566677788889999999987 


Q ss_pred             --HHHHHHHHHHHHHHHhHhhhhccc-CccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhccc
Q 014286          263 --LANVFVGIANLLGSVVAMVLMDKL-GRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAG  339 (427)
Q Consensus       263 --~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (427)
                        .......+..++.++....+.+|. ++|+.......++.++.+.+.+.+...      ++.   ..++.+.+.+..+ 
T Consensus       245 aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~------~~l---w~~llG~G~G~~F-  314 (395)
T COG2807         245 AGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQL------PIL---WALLLGLGQGGAF-  314 (395)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhH------HHH---HHHHHhCccchHH-
Confidence              566677788888899999999964 577777777777777777766554321      111   1234444433332 


Q ss_pred             chhhhhccC-cCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHHHHH
Q 014286          340 PVPSLLLPE-IFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLG-PQLLYSIFGTFCLMAVAFVK  405 (427)
Q Consensus       340 ~~~~~~~~~-~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~  405 (427)
                      |.....+.+ .-.++..+.-.|+.+.++++-...||.+.|.+.|..| |...+..++.+.++..+..+
T Consensus       315 ~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~Gl  382 (395)
T COG2807         315 PLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLIFGL  382 (395)
T ss_pred             HHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHHHh
Confidence            333334433 3345677888999999999999999999999999987 66666666665555555444

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.86  E-value=7e-20  Score=169.39  Aligned_cols=330  Identities=17%  Similarity=0.106  Sum_probs=198.1

Q ss_pred             HHhhhhhccccccccchhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhccc-----chhH-HHHHhhHHHHH
Q 014286           57 TLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV-----GRRR-AFQLCALPMII  130 (427)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~-----Grr~-~l~~~~~~~~~  130 (427)
                      ..-++..++..+.....+|.+.++.|++.++.  |++..+...  .+.++++|+++||+     |||| .++++.++.++
T Consensus         5 ~~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~i--g~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l   80 (402)
T PRK11902          5 LLLGFASGLPLALTSGTLQAWMTVEGLDIQTI--GFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAA   80 (402)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHH
Confidence            34466677778888889999999999877766  888766665  58999999999999     8875 68888888888


Q ss_pred             HHHHHHhh---hhhHHHHHHHHHHhhhccccccceeecccCCchhhhhcCChHHHHHH------HHH---------HhCC
Q 014286          131 GASISATT---RNLIGMLLGRFVVGTGMGLGPTVAALYVTESPHWLYKKGRTAEAEAE------FEK---------LLGG  192 (427)
Q Consensus       131 ~~~~~~~~---~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~------~~~---------~~~~  192 (427)
                      +..+.++.   .+++.+++..++.++..+...+...++++|.    ..++++......      +..         +...
T Consensus        81 ~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~----~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~  156 (402)
T PRK11902         81 SIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDV----LHPEERGAGAAVKVLGYRLAMLVSGGLALWLADR  156 (402)
T ss_pred             HHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence            88888886   3577888888888888877777777776652    122211111100      000         0000


Q ss_pred             --Cch-----------hh--HHHHHhhhhcCC--C-----CCcchhHhhhcccchhHHHHHHHHHHhhhccchhHHHHhH
Q 014286          193 --SHV-----------KS--SLAELSKLDRGD--D-----GDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFS  250 (427)
Q Consensus       193 --~~~-----------~~--~~~~~~~~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (427)
                        .+.           ..  .....+++++.+  +     +...+++++++++.++..++...+........   ..+..
T Consensus       157 ~~gw~~~f~i~a~~~l~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~---~~~~~  233 (402)
T PRK11902        157 VLGWGNTYLLMAGLMLAGALTTLWAPEPEVPARPPRSLGEAVVGPLRDFFSRRGAWALLLLIVLYKLGDAFA---GSLST  233 (402)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHhcCCCcccccccchhHHHHHHHHHHHHhCcCHHHHHHHHHHHHhHHHHH---HHHHH
Confidence              000           00  000001110100  0     11234667788887776655544433322111   12233


Q ss_pred             HHHHHhcCCChhHHHHH---HH-HHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHH
Q 014286          251 SSVFKSAGLSSGLANVF---VG-IANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGG  326 (427)
Q Consensus       251 ~~~~~~~g~~~~~~~~~---~~-~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (427)
                      +++.++.|.++......   .+ ++.+++.++++++.||+++|+.+..+..+..+..+.+......    ..+.+.....
T Consensus       234 ~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~----~~~~~~~~~~  309 (402)
T PRK11902        234 TFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVT----PKHLWTMALA  309 (402)
T ss_pred             HHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc----CCcHHHHHHH
Confidence            44556678887733333   22 3567889999999999999888776666655544333221111    1112222222


Q ss_pred             HHH----HHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Q 014286          327 MLM----FVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVA  402 (427)
Q Consensus       327 ~~~----~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~  402 (427)
                      ..+    .+...+ ...+....++.+.+|.++    .++.+....++..+++.+.|.+.|..||+..|.+.+++++++.+
T Consensus       310 ~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~  384 (402)
T PRK11902        310 IGIENLCGGMGTA-AFVALLMALCNRSFSATQ----YALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLA  384 (402)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHhcCCCCcHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence            221    111121 223444447777766544    45666666778777778999999999999999888888877766


Q ss_pred             HHHH
Q 014286          403 FVKR  406 (427)
Q Consensus       403 ~~~~  406 (427)
                      +.+.
T Consensus       385 ~~~~  388 (402)
T PRK11902        385 LLWL  388 (402)
T ss_pred             HHHH
Confidence            5543

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.85  E-value=4.6e-20  Score=169.82  Aligned_cols=246  Identities=18%  Similarity=0.164  Sum_probs=167.7

Q ss_pred             CchhHHHHHHHHHHhhhhhcccccccc-chhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHH
Q 014286           45 SWKLSFPHVLVATLSSFLFGYHLGVVN-EPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQL  123 (427)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~  123 (427)
                      .+|..+.++..+++.++....+...++ +.+..+.+|.+...++.  +.+.++|.++++++++++|.+.||++-.+.+..
T Consensus        39 ~~K~dl~i~~~~~~~y~~~~~d~~si~~a~l~g~~edl~~~~~~l--~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~  116 (495)
T KOG2533|consen   39 LRKLDLFILPFLCYLYFHAYLDKSSIVNASLSGLKEDLKLVGNQL--GVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSV  116 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcchhcchhHHHcCCccccchhhhhh--hhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHH
Confidence            344556677777888888888776554 33456778888766666  999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccceeecccCCchhhhhcCChHHHHH--------------HHHHH
Q 014286          124 CALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTESPHWLYKKGRTAEAEA--------------EFEKL  189 (427)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~--------------~~~~~  189 (427)
                      ..+++++.+++....+|++.+++.|++.|+..+..+|....++..   |+. +.+......              .+...
T Consensus       117 ~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~---wy~-~~e~g~r~~~~~a~~~~g~i~ggliA~g  192 (495)
T KOG2533|consen  117 SGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGN---WYG-KSERGLRMGIWYASASLGNIFGGLIAYG  192 (495)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHh---hcC-hhhhhhhHHHHHHhcchhhHHHHHHHHH
Confidence            999999999888889999999999999999999999999888873   111 111100000              00000


Q ss_pred             --------------------------hC------CCc------hh-hHH-----HHHhhhhc---CCCCCcchhHhhhcc
Q 014286          190 --------------------------LG------GSH------VK-SSL-----AELSKLDR---GDDGDIVKFEELLYG  222 (427)
Q Consensus       190 --------------------------~~------~~~------~~-~~~-----~~~~~~~~---~~~~~~~~~~~~~~~  222 (427)
                                                .+      .+.      .. ++.     ++.++.+.   .++.++..+++.+++
T Consensus       193 ~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d  272 (495)
T KOG2533|consen  193 VFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDEEKELVVERLRESPSGGIENKFKWKGFKEALKD  272 (495)
T ss_pred             hhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChhhccccchHHHHHHHHHHHhccCCCcccccCHHHHHHHHhc
Confidence                                      00      000      00 011     11111111   111344567788888


Q ss_pred             cchhHHHHHHHHHHhhhccchhHHHHhHHHHHHh-cCCChh---HHHHHHHHHHHHHHHhHhhhhcc----cCccchhhh
Q 014286          223 RHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKS-AGLSSG---LANVFVGIANLLGSVVAMVLMDK----LGRKALLQW  294 (427)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~----~g~~~~~~~  294 (427)
                      +..+...++.++...    ..+.+.+|.|.+.++ .+++..   .+..+..++++++.+++|+++||    ..+|.....
T Consensus       273 p~vw~~~l~~~~~~l----v~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~  348 (495)
T KOG2533|consen  273 PGVWPFSLCYFFLKL----VNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIV  348 (495)
T ss_pred             hhHHHHHHHHHHHhh----ccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            888877776666555    445566677777766 335443   68888999999999999999999    445554444


Q ss_pred             hhHHHH
Q 014286          295 SFFSMA  300 (427)
Q Consensus       295 ~~~~~~  300 (427)
                      ...+..
T Consensus       349 ~~~~~~  354 (495)
T KOG2533|consen  349 FLCLYA  354 (495)
T ss_pred             HHHHHH
Confidence            444333

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.85  E-value=1.2e-20  Score=154.21  Aligned_cols=347  Identities=17%  Similarity=0.108  Sum_probs=208.1

Q ss_pred             CchhHHHHHHHHHHhhhhhccccccccchhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcc-cchhHHHHH
Q 014286           45 SWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG-VGRRRAFQL  123 (427)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr-~Grr~~l~~  123 (427)
                      ...+++..++..|+..|-.+++....+....+..+|.+++.++.  .++.+.|.....+-+.+.|++.|| +|-|..-++
T Consensus        38 ~l~hr~m~lv~mc~lgfgsyfcyd~p~alq~~fk~d~ni~~akf--tLlYsvYSwPNvVlcffgGflidr~fgir~gtii  115 (459)
T KOG4686|consen   38 ALGHRFMALVFMCLLGFGSYFCYDAPGALQIDFKLDSNIEYAKF--TLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTII  115 (459)
T ss_pred             hhhhHHHHHHHHHHhcccceeecCCchhhhhhhhcccccceeee--eeeeeeccCCCEEEeeecceeehhhhhhhHHHHH
Confidence            34455667778888888888888887777778888888876666  699999999999999999999997 788877766


Q ss_pred             hhHHHHHHHHHHHh---hhhhHHHHHHHHHHhhhccccccceeecccC----------------------C-----chhh
Q 014286          124 CALPMIIGASISAT---TRNLIGMLLGRFVVGTGMGLGPTVAALYVTE----------------------S-----PHWL  173 (427)
Q Consensus       124 ~~~~~~~~~~~~~~---~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~----------------------~-----~~~~  173 (427)
                      -++...++-+.++.   .+.+|.++++|++.|+|.-...++...|+.-                      +     -.|+
T Consensus       116 ~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~l  195 (459)
T KOG4686|consen  116 LCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFL  195 (459)
T ss_pred             HHHHHHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHH
Confidence            66666777777654   7899999999999999977666666665551                      0     0011


Q ss_pred             hhc------CChHHHHHHHHHHh------------CCCchhhHHHHHhhhhcCCCCCcchhHhhhc-ccchhHHHHHHHH
Q 014286          174 YKK------GRTAEAEAEFEKLL------------GGSHVKSSLAELSKLDRGDDGDIVKFEELLY-GRHFRVVFIGSTL  234 (427)
Q Consensus       174 ~~~------~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  234 (427)
                      ...      +...........+.            .....++..+.+-+.++....+..+..+... .+.+|.+.+...+
T Consensus       196 y~~~~~~~~~~ghT~LG~~l~~~~~tc~~slical~lg~~D~rAerilh~e~g~~Ge~pkLtdv~~f~ppfw~~~iicv~  275 (459)
T KOG4686|consen  196 YDTMGRMFPGVGHTLLGLWLCFEVKTCKQSLICALSLGLSDDRAERILHLEEGFLGEEPKLTDVNTFYPPFWVLVIICVL  275 (459)
T ss_pred             HHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcCcccCCcccccccccCccHHHHHHHHHH
Confidence            100      00000000000000            0000111111111111111111122222211 2345554444444


Q ss_pred             HHhhhccchhHHHHhHHHHHHhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhh
Q 014286          235 FALQQLSGINAIFYFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASS  311 (427)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~  311 (427)
                      +....+.   .+..-...+.+++|+++.   .+.........+.+++.|.++||+|++...+.+..+..+..-...+...
T Consensus       276 yyva~fP---Fi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft~  352 (459)
T KOG4686|consen  276 YYVAWFP---FITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFTF  352 (459)
T ss_pred             HHHHHHH---HhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhhh
Confidence            4332222   111222344567888876   3444555566677889999999999997777666555444333222221


Q ss_pred             cCCCCCchhHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-c---c
Q 014286          312 SYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLG-P---Q  387 (427)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~---~  387 (427)
                               +.....+.+.+....... ...+..++.+.|+++.|++.|..+.+.++|-++.|.++|.+.|+-| +   .
T Consensus       353 ---------lsPy~~m~~lGLsysllA-cslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le  422 (459)
T KOG4686|consen  353 ---------LSPYTSMTFLGLSYSLLA-CSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLE  422 (459)
T ss_pred             ---------ccHHHHHHHHhhhHHHHH-HHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHH
Confidence                     123334444444443322 2234466777888999999999999999999999999999999876 2   2


Q ss_pred             hhHHHHHHHHHHHHHHHHH
Q 014286          388 LLYSIFGTFCLMAVAFVKR  406 (427)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~  406 (427)
                      ..|++...+.++...+.+.
T Consensus       423 ~ffl~~~~~aL~svgil~~  441 (459)
T KOG4686|consen  423 AFFLIIGLMALTSVGILFY  441 (459)
T ss_pred             HHHHHHHHHHHHHHHHHhh
Confidence            3444444455555444443

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.85  E-value=7e-20  Score=191.07  Aligned_cols=338  Identities=14%  Similarity=0.060  Sum_probs=193.2

Q ss_pred             HHHHHhhhhhccccccccch-hhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHH---hhHHHH
Q 014286           54 LVATLSSFLFGYHLGVVNEP-LESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQL---CALPMI  129 (427)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~---~~~~~~  129 (427)
                      ...+++.+.+++....+... ...+..+.+.+. ....++..+++.+++.++++++|+++||+|||+++..   ..++..
T Consensus        18 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~   96 (1140)
T PRK06814         18 WTQFFGAFNDNFLKNALVILILYGLSGALGAYN-NALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIA   96 (1140)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHhccccccch-HHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHH
Confidence            33344444444333222222 224444443322 2334888999999999999999999999999997633   333333


Q ss_pred             HHHHHHHhhhhhHHHHHHHHHHhhhccccccceeecccCCchhhhhcCChHHHHHHHHH------HhC---------CCc
Q 014286          130 IGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTESPHWLYKKGRTAEAEAEFEK------LLG---------GSH  194 (427)
Q Consensus       130 ~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~------~~~---------~~~  194 (427)
                      +..+.+...+|+++++++|+++|++.+...+...+++++.    ...++...+......      ..+         ...
T Consensus        97 ~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~----~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~  172 (1140)
T PRK06814         97 ALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDH----LNKDELLGANALVEAGTFIAILLGTIIGGLATISGN  172 (1140)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhh----cCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            3334444458999999999999999999999999988862    222222211111110      000         000


Q ss_pred             hhh------------H-H-HHHhhhhcC-C--CCC-------cchhHhhhcccchhHHHHHHHHHHhhhccchhHHHHhH
Q 014286          195 VKS------------S-L-AELSKLDRG-D--DGD-------IVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFS  250 (427)
Q Consensus       195 ~~~------------~-~-~~~~~~~~~-~--~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (427)
                      ...            . . ...++.+.. +  +..       ...++.+.+++.++...+...+..+..    .....+.
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~  248 (1140)
T PRK06814        173 FVILVALLMGIAVLGWLASLFIPKTGNAAPDLKIDRNIIRSTITLLKYAKADKRIWLAILGISWFWLVG----AVVLSQL  248 (1140)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCeeccchHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH----HHHHHHh
Confidence            000            0 0 000010000 0  000       123455666666666555544443322    2222233


Q ss_pred             HH-HHHhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcC-C-----------
Q 014286          251 SS-VFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSY-I-----------  314 (427)
Q Consensus       251 ~~-~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----------  314 (427)
                      |. ..+..|.+..   ......+++.+++.++.|+++|+..+++.+..+.++.+++.+.+.+..... .           
T Consensus       249 p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  328 (1140)
T PRK06814        249 PLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVF  328 (1140)
T ss_pred             HHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhh
Confidence            43 3344676655   566777889999999999999988777666655555555444333320000 0           


Q ss_pred             CCCchhHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH-hccchhHHHH
Q 014286          315 PGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQ-LGPQLLYSIF  393 (427)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~-~g~~~~~~~~  393 (427)
                      ......+...+..++++++.+....+ ..+++.+..|++.+|+++|+.+++..++..+++.+.|.+.+. .++...+.+.
T Consensus       329 ~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~  407 (1140)
T PRK06814        329 LSKRHGWRILIDLFGLAAAGGLYIVP-LFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFI  407 (1140)
T ss_pred             hcccccHHHHHHHHHHHHHHHHhHHH-HHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence            00122233444444455544443334 455889999999999999999999999999999999998753 3455555554


Q ss_pred             HHHHHHHH
Q 014286          394 GTFCLMAV  401 (427)
Q Consensus       394 ~~~~~~~~  401 (427)
                      +++.++..
T Consensus       408 ~~~~~~~~  415 (1140)
T PRK06814        408 ALANLIVA  415 (1140)
T ss_pred             HHHHHHHH
Confidence            44434333

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.84  E-value=5e-19  Score=164.92  Aligned_cols=320  Identities=16%  Similarity=0.147  Sum_probs=188.1

Q ss_pred             hHHHHHHHHHHhhhhhccccccccchhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHhhHH
Q 014286           48 LSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALP  127 (427)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~  127 (427)
                      +.+..+...++......+.....+.+++.+..|+|-++. .  .|+.+.+.++.+++.++.|+++|.||||.+++.+.++
T Consensus        41 ~~i~~~~~~~~~~~~~~~~~~~~a~~l~~I~~diG~~~~-~--~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l  117 (599)
T PF06609_consen   41 RFIASFAAFSLAVIAAYFVLVLPASILPYINADIGGSDN-W--SWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLL  117 (599)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCCcc-c--hHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHH
Confidence            333333344444444555556667788999999996433 3  6999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHhhhccccccceeeccc------------------------------------CCch
Q 014286          128 MIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVT------------------------------------ESPH  171 (427)
Q Consensus       128 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~------------------------------------~~~~  171 (427)
                      ..+|++.++.++|...++++-.+.|+|.|...... ..++                                    .+||
T Consensus       118 ~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~~~~-~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WR  196 (599)
T PF06609_consen  118 GVVGSIVCATAQNMNTFIAGMVLYGVGAGVQELAA-LAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWR  196 (599)
T ss_pred             HHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHHHHH-HHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcc
Confidence            99999999999999999999999999987544321 1122                                    2455


Q ss_pred             hhhhcCChHHHHHHHH--HHhCCCc----------hhhHHHH--------------------------------------
Q 014286          172 WLYKKGRTAEAEAEFE--KLLGGSH----------VKSSLAE--------------------------------------  201 (427)
Q Consensus       172 ~~~~~~~~~~~~~~~~--~~~~~~~----------~~~~~~~--------------------------------------  201 (427)
                      |.+.....-.....+.  ..+....          .++..++                                      
T Consensus       197 w~~~~~~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~  276 (599)
T PF06609_consen  197 WIFYIFIIWSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAP  276 (599)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhh
Confidence            4211110000000000  0000000          0000000                                      


Q ss_pred             ----------HhhhhcC-CCCCcchhHhhhccc-chhHHHHHHHHHHhhhccchhHHHHhHHHHHHhcCCCh------hH
Q 014286          202 ----------LSKLDRG-DDGDIVKFEELLYGR-HFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSS------GL  263 (427)
Q Consensus       202 ----------~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~------~~  263 (427)
                                .--.+.. ..+++.-..+++|++ .+...++..++...   ..+....+|.+.....++.+.      ..
T Consensus       277 lviG~~~Lv~F~~wE~~~~~~~Pl~P~~Lf~~~r~~~~~lvi~fi~G~---~~~s~~~l~p~~~~~vf~~d~~~~~~~~~  353 (599)
T PF06609_consen  277 LVIGFVLLVAFVVWEWFGAPKDPLFPHRLFKDRRGFAALLVISFISGM---NFFSVNILWPQQVVNVFGSDPISITEIGW  353 (599)
T ss_pred             HHHHHHHHHHHHHhhhhccCCCCcCCHHHhccchHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhccCCCcccceeeh
Confidence                      0000000 011122234556553 23222233323222   233444455555554444432      25


Q ss_pred             HHHHHHHHHHHHHHhHhhhhcccCc-cchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcccchh
Q 014286          264 ANVFVGIANLLGSVVAMVLMDKLGR-KALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVP  342 (427)
Q Consensus       264 ~~~~~~~~~~~~~~~~g~l~d~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (427)
                      ...+.+++..++.++.|.+..+++| |+.++++..++.++..++.....    +..+..  +....+.+++.+....+..
T Consensus       354 ~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~~----~n~~~~--i~~~~l~g~giG~~~~~~~  427 (599)
T PF06609_consen  354 ISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVRP----DNKNAA--IAFLVLAGFGIGGILVPAI  427 (599)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHccC----CCcchH--HHHHHHHHHhHHHHHHHHH
Confidence            6677888888888989999988876 55556666666554444443221    111122  2223333444433333333


Q ss_pred             hhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 014286          343 SLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLL  381 (427)
Q Consensus       343 ~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~  381 (427)
                      . .++-..|+++-|++.|+..+++.+|+.++..+...+.
T Consensus       428 ~-~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~  465 (599)
T PF06609_consen  428 V-IAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIF  465 (599)
T ss_pred             H-eeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            3 5556789999999999999999999999998876544

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.84  E-value=3.2e-19  Score=162.13  Aligned_cols=340  Identities=17%  Similarity=0.147  Sum_probs=212.0

Q ss_pred             hhhhccccccccchhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccc-hhHHHHHhhHHHHHHHHHHHhh
Q 014286           60 SFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVG-RRRAFQLCALPMIIGASISATT  138 (427)
Q Consensus        60 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G-rr~~l~~~~~~~~~~~~~~~~~  138 (427)
                      +++..+..+...|.+|.+-++.|+|..+.  |.+.+...+...++++++|.++||++ +|+++.+..++.++........
T Consensus        11 ~f~~f~~~G~~~p~~~~~L~~~G~s~~qI--G~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~   88 (400)
T PF03825_consen   11 YFLYFFAYGAFLPYLPLYLESRGFSGTQI--GILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFS   88 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            34444555667788899999999765655  99999999999999999999999986 6778878778777777777788


Q ss_pred             hhhHHHHHHHHHHhhhccccccceeecccC----CchhhhhcCCh---HHHHHH---HHHHhCC---Cch----------
Q 014286          139 RNLIGMLLGRFVVGTGMGLGPTVAALYVTE----SPHWLYKKGRT---AEAEAE---FEKLLGG---SHV----------  195 (427)
Q Consensus       139 ~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~----~~~~~~~~~~~---~~~~~~---~~~~~~~---~~~----------  195 (427)
                      ++++.+++.-++..+......+...++.-+    ..+-+...+-+   .-....   .....+.   ...          
T Consensus        89 ~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  168 (400)
T PF03825_consen   89 SSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGDRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAIL  168 (400)
T ss_pred             ccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHH
Confidence            899988888888887766655555444332    11101000000   000010   0000000   000          


Q ss_pred             ---hh----HHHHHhhhhc-C---CCCCcchhHhhhcccchhHHHHHHHHHHhhhccchhHHHHhHHHHHHhcC-CChh-
Q 014286          196 ---KS----SLAELSKLDR-G---DDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAG-LSSG-  262 (427)
Q Consensus       196 ---~~----~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~-  262 (427)
                         ..    ..++.+.+++ +   ++....+..+++|+|+....++..++....    ......|.+.+.++.| .+.. 
T Consensus       169 ~~ll~~~~l~lp~~~~~~~~~~~~~~~~~~~~~~llk~~~~~~Fll~~~l~~~~----~~~~~~f~~~yl~~~gg~~~~~  244 (400)
T PF03825_consen  169 SLLLAGFALFLPKTPPKRSAKESVKKLLGLDALKLLKNPRFLVFLLAAFLIGIS----HAAYYTFFSIYLQELGGYSGST  244 (400)
T ss_pred             HHHHHHHHHhCCCCccccccCCCcccccchHHHHHhcCccHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcccchhhH
Confidence               00    0001110000 1   111112334688888887766666555543    3334445555566666 4433 


Q ss_pred             --HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhH-HHHHHHHHHHHHHhhccc
Q 014286          263 --LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLY-LSVGGMLMFVLTFALGAG  339 (427)
Q Consensus       263 --~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  339 (427)
                        ....+..+..++.-...+++.+|+|.++++.++.+..++=..++.......    ...+ .......+.+..++....
T Consensus       245 ~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~----~~~~~~~~l~q~lhG~tf~~~~~  320 (400)
T PF03825_consen  245 IGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPW----PFIVALQLLGQLLHGLTFGLFHA  320 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCc----HHHHHHHHHHHhhhhHHHHHHHH
Confidence              344455677778888999999999999999999999888887777652110    0001 111112345655555544


Q ss_pred             chhhhhccCcCCccchhhHHHHHHHH-HHHHHHHHHHHHHHHHHHhccch------hHHHHHHHHHHHHHHHHHhccC
Q 014286          340 PVPSLLLPEIFPSRIRAKAMAVCMSV-HWVINFFVGLLFLRLLEQLGPQL------LYSIFGTFCLMAVAFVKRNVVE  410 (427)
Q Consensus       340 ~~~~~~~~~~~p~~~~g~~~g~~~~~-~~~g~~~~~~~~g~l~~~~g~~~------~~~~~~~~~~~~~~~~~~~~~~  410 (427)
                      .... ++.+..|++.|++++++++.. ..+|..+|..+.|++.|+.|.+.      .+.+.+++.++..++...+.||
T Consensus       321 a~~~-yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~  397 (400)
T PF03825_consen  321 ASVR-YIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKP  397 (400)
T ss_pred             HHHH-HHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccC
Confidence            4545 999999999999999998876 46899999999999999988554      3444444444444444444443

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.84  E-value=1.1e-19  Score=170.48  Aligned_cols=301  Identities=16%  Similarity=0.090  Sum_probs=177.1

Q ss_pred             hhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcc----cchhH-HHHHhhHHHHHHHHHHHhhhh------h
Q 014286           73 PLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG----VGRRR-AFQLCALPMIIGASISATTRN------L  141 (427)
Q Consensus        73 ~~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr----~Grr~-~l~~~~~~~~~~~~~~~~~~~------~  141 (427)
                      ..+.+.+++|++....  |++.++..+..++..|+.|+++||    +|||| .++.+....+++.+++...++      +
T Consensus        22 l~~~~~~~~g~s~~~~--g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~   99 (437)
T TIGR00792        22 LLFFYTDVLGLSAAFV--GTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKL   99 (437)
T ss_pred             HHHHHHHccCCCHHHH--HHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHH
Confidence            3456677889866655  999999999999999999999998    68744 577888888888888877654      4


Q ss_pred             HHHHHHHHHHhhhccccccceeecccCCchhhhhcCCh---HHHH----HHH-----HHH---hCC--C--chhh-----
Q 014286          142 IGMLLGRFVVGTGMGLGPTVAALYVTESPHWLYKKGRT---AEAE----AEF-----EKL---LGG--S--HVKS-----  197 (427)
Q Consensus       142 ~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~~~---~~~~----~~~-----~~~---~~~--~--~~~~-----  197 (427)
                      ..+++.+++.+++.+...+...++.+|-..-...+.+.   ....    ..+     ..+   .+.  .  ..+.     
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~  179 (437)
T TIGR00792       100 VYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVL  179 (437)
T ss_pred             HHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHH
Confidence            56777888888887765555445544411000000000   0000    000     000   000  0  0000     


Q ss_pred             -------------HHHHHhhhhcCCCCC----cchhHhhhcccchhHHHHHHHHHHhhhccchhHHHHhHHHHHHh-cCC
Q 014286          198 -------------SLAELSKLDRGDDGD----IVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKS-AGL  259 (427)
Q Consensus       198 -------------~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~  259 (427)
                                   ..++.++..+.++++    ...++++++++.++...+..++.......    ...+.+++.+. .+.
T Consensus       180 ~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~  255 (437)
T TIGR00792       180 ALIGVVSLIICFFGTKERYSEIPKNIEKKLSLKQIFKALFKNDQLLILCLAYLFYNLAFNI----KNGVQVYYFTYVLGD  255 (437)
T ss_pred             HHHHHHHHHHHHcCCEecCCCCCcccccCCCHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH----HcchhheeEeeecCC
Confidence                         000000000011011    22345666777666555544443332221    11122222221 221


Q ss_pred             Ch--hHHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhc
Q 014286          260 SS--GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALG  337 (427)
Q Consensus       260 ~~--~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (427)
                      +.  ........++.+++.++.++++||+|+|+.+..+..+.+++.+.+.+..       ...+...+...+.+.+.+..
T Consensus       256 ~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~  328 (437)
T TIGR00792       256 PELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAG-------SNLPLILVLIILAGFGQNFV  328 (437)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcc-------hhHHHHHHHHHHHHHHHHHH
Confidence            11  1344556788889999999999999999999888877777666554321       11222333333333433332


Q ss_pred             ccchhhhhccCcCC-------ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 014286          338 AGPVPSLLLPEIFP-------SRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQ  387 (427)
Q Consensus       338 ~~~~~~~~~~~~~p-------~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~  387 (427)
                       .+...++.+|..+       ++.+|.+.|+.+....+|..+++.+.|.+.+..|+.
T Consensus       329 -~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~~  384 (437)
T TIGR00792       329 -TGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGYV  384 (437)
T ss_pred             -HHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence             3455557777654       456899999999999999999999999999988763

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.82  E-value=3.9e-18  Score=160.07  Aligned_cols=352  Identities=13%  Similarity=0.058  Sum_probs=201.0

Q ss_pred             HHHHhhhhhccccccccchhhhhhh-c--cCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcc-cchhHHHHHhhHHHHH
Q 014286           55 VATLSSFLFGYHLGVVNEPLESISL-D--LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG-VGRRRAFQLCALPMII  130 (427)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~i~~-~--~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr-~Grr~~l~~~~~~~~~  130 (427)
                      .+.+..+.+.+......+.+|.+.+ +  +|++..+.  |++.+.+.++..++++++|+++|| +|||+++.++.+++++
T Consensus        14 ~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~a--g~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~   91 (475)
T TIGR00924        14 TLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQA--FIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLML   91 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHH--HHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHH
Confidence            3334445555555555667776644 4  78765555  999999999999999999999999 8999999999999999


Q ss_pred             HHHHHHhhhhhHHHHHHHHHHhhhccccccceeecccCC------ch------h------------------hhhcCChH
Q 014286          131 GASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTES------PH------W------------------LYKKGRTA  180 (427)
Q Consensus       131 ~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~------~~------~------------------~~~~~~~~  180 (427)
                      +.++.+++++++.++++|++.|+|.|...+...+++.+.      ++      +                  +.....+.
T Consensus        92 g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~  171 (475)
T TIGR00924        92 GHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYH  171 (475)
T ss_pred             HHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChH
Confidence            999999999999999999999999998888777766531      00      0                  00000000


Q ss_pred             HHHHHHH--HHhCCC---chhhHHHHHhhhhcC-CCCCcchhH-------------------------------------
Q 014286          181 EAEAEFE--KLLGGS---HVKSSLAELSKLDRG-DDGDIVKFE-------------------------------------  217 (427)
Q Consensus       181 ~~~~~~~--~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~-------------------------------------  217 (427)
                      .......  ......   ......++.+++++. +++++...+                                     
T Consensus       172 ~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (475)
T TIGR00924       172 VGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTVTLAVI  251 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            0000000  000000   000000000000000 000000000                                     


Q ss_pred             ----hhhccc-------chhHHHHHHHHHHhhhccchhHHHHhHHHHH-Hhc-------CCChhHHHHHHHHHHHHHHHh
Q 014286          218 ----ELLYGR-------HFRVVFIGSTLFALQQLSGINAIFYFSSSVF-KSA-------GLSSGLANVFVGIANLLGSVV  278 (427)
Q Consensus       218 ----~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-------g~~~~~~~~~~~~~~~~~~~~  278 (427)
                          +..+++       .....++..++.....+..+.-.....+.+. ++.       +.+++....+..+..++..++
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~  331 (475)
T TIGR00924       252 IFFFRLAFKPRLDAVARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPV  331 (475)
T ss_pred             HHHHHHHHhccCCHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHH
Confidence                000000       0001111112211111112222222222222 211       122445666666666666655


Q ss_pred             Hh----hhhcc-cCccchh--hhhhHHHHHHHHHHHHHhhcCC-CCCchhHHHHHHHHHHHHHHhhcccchhhhhccCcC
Q 014286          279 AM----VLMDK-LGRKALL--QWSFFSMAVSMAIQVAASSSYI-PGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIF  350 (427)
Q Consensus       279 ~g----~l~d~-~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (427)
                      ..    ++.|| .+.+...  .+|.++.++++..+.+...... ....+.++.+....+.+.+... ..|...++..+..
T Consensus       332 ~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~-~~p~~~~~~~~~a  410 (475)
T TIGR00924       332 LAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELM-ISPLGLSWWTKIA  410 (475)
T ss_pred             HHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHH-HhHHHHHHHHHhC
Confidence            44    44444 2233333  5677777777766654322111 1133555566666666665553 4566666999999


Q ss_pred             CccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhcc
Q 014286          351 PSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVV  409 (427)
Q Consensus       351 p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  409 (427)
                      |++.||+.+|+......+|..+++.+.....+..++...|...++++++..++.++..|
T Consensus       411 P~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (475)
T TIGR00924       411 PQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP  469 (475)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999888777777887888887777776666654443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.81  E-value=7.6e-18  Score=155.33  Aligned_cols=339  Identities=12%  Similarity=0.034  Sum_probs=188.5

Q ss_pred             HHHHHHhhhhhccccccccchhhhhhhccCCCCchhHHHHH--HHHHHHHHHHHHHhHH-hhhcccchhHHHHHhhHHH-
Q 014286           53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLV--VSMCLGGAFIGSTLSG-WIADGVGRRRAFQLCALPM-  128 (427)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~--~s~~~l~~~~~~~~~G-~l~dr~Grr~~l~~~~~~~-  128 (427)
                      ...++..++..+...+...|.+|.+.+|.|.+.++.  |++  .+...+...+.+++++ +..||+||||..++.+.+. 
T Consensus         3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~i--Gl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~   80 (390)
T TIGR02718         3 VITLGLLYLSQGIPIGLAMDALPTLLREDGAPLTAL--AFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLV   80 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHH
Confidence            455666778889998999999999999999876666  886  4666778888888884 4799999999976665332 


Q ss_pred             HHHHHHHH-h--hhh-hHHHHHHHHHHhhhccccccceeecccCCchhhhhcCC-h----HHHHHHHHHHhCC-------
Q 014286          129 IIGASISA-T--TRN-LIGMLLGRFVVGTGMGLGPTVAALYVTESPHWLYKKGR-T----AEAEAEFEKLLGG-------  192 (427)
Q Consensus       129 ~~~~~~~~-~--~~~-~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~~-~----~~~~~~~~~~~~~-------  192 (427)
                      ++.....+ +  ..+ ..+++..-++.++..+...+....+..|..+   .++. .    ......+....+.       
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~---~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~  157 (390)
T TIGR02718        81 SACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFN---GRTLAKGNAVQIAGVMIGFFGGGAGTLVLF  157 (390)
T ss_pred             HHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---HhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22222222 1  222 3334444455555555555544444333110   0000 0    0000000110000       


Q ss_pred             ---Cch-----------h-h-HHHHHhhhh----cCCCCCcchhHhhhcccchhHHHHHHHHHHhhhccchhHHHHhHHH
Q 014286          193 ---SHV-----------K-S-SLAELSKLD----RGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSS  252 (427)
Q Consensus       193 ---~~~-----------~-~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (427)
                         .+.           . . ......+++    +.++++..++++.+|++..+......++......    ....+.+.
T Consensus       158 ~~~gw~~~f~~~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~----~~~~~~~~  233 (390)
T TIGR02718       158 GKFGQRPAFLLVACVPLASLVCVLWLKDRAVASPEAPLARRASLFRFFRRPLAWSLLALALLSAMTAV----SGFGLSKL  233 (390)
T ss_pred             HHhCHHHHHHHHHHHHHHHHHHHHHcCCCCcCccccchhhHHHHHHHHcCcCHHHHHHHHHHHHHHHH----HHHHHhhH
Confidence               000           0 0 000000110    0011122345678888877665555544443222    22223444


Q ss_pred             HHHhcCCChhHHHHHH---H-HHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHH
Q 014286          253 VFKSAGLSSGLANVFV---G-IANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGML  328 (427)
Q Consensus       253 ~~~~~g~~~~~~~~~~---~-~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (427)
                      +.++.|.+........   + ...+++.++.|++.||+|+|+.+..+..+.++.............  ............
T Consensus       234 ~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  311 (390)
T TIGR02718       234 YLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWL--APGIAVAWSCSA  311 (390)
T ss_pred             HHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHccc--CCcHHHHHHHHH
Confidence            5556788887433332   2 355667889999999999999888776655333322222111110  011111122222


Q ss_pred             HHHHHHhhcccchhhhhccCcCCc-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHH
Q 014286          329 MFVLTFALGAGPVPSLLLPEIFPS-RIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAF  403 (427)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~p~-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~  403 (427)
                      +.....+........ ...+..++ +.+++..++.+...++|..++|.+.|.+.|..|+...|...+++.+++.++
T Consensus       312 ~~~~~~g~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~~  386 (390)
T TIGR02718       312 FGSLITGITSVAIYT-AFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAILL  386 (390)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence            222222322222333 44444554 789999999999999999999999999999999988888877766665443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.81  E-value=1.5e-18  Score=162.98  Aligned_cols=344  Identities=12%  Similarity=0.100  Sum_probs=191.4

Q ss_pred             HHhhhhhccccccccch-hhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcc-cchhHHHHHhhHHHHHHHHH
Q 014286           57 TLSSFLFGYHLGVVNEP-LESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG-VGRRRAFQLCALPMIIGASI  134 (427)
Q Consensus        57 ~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr-~Grr~~l~~~~~~~~~~~~~  134 (427)
                      ++..+...+......+. ...+.+++|++.++.  +++.+.+.....+..++.|+++|| +||||+++.+.+++++++++
T Consensus        20 ~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a--~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~   97 (489)
T PRK10207         20 FFVELWERFGYYGVQGILAVFFVKQLGFSQEQA--FITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFM   97 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHH
Confidence            33333343443333333 446677899876666  799999998888889999999999 99999999999999999999


Q ss_pred             HHhhhhhHH-HHHHHHHHhhhccccccceeecccCCchhhhhcCC--hHHHHHH------HHHHhC--------C--Cc-
Q 014286          135 SATTRNLIG-MLLGRFVVGTGMGLGPTVAALYVTESPHWLYKKGR--TAEAEAE------FEKLLG--------G--SH-  194 (427)
Q Consensus       135 ~~~~~~~~~-l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~------~~~~~~--------~--~~-  194 (427)
                      ++++++... ++++|+++|+|.|...+...+++.|    .+..++  ...+...      +....+        .  .+ 
T Consensus        98 ~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~----~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~  173 (489)
T PRK10207         98 TGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSK----CYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYS  173 (489)
T ss_pred             HHHhccchhHHHHHHHHHHhccccccCCHHHHHHH----hcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChH
Confidence            999877554 5589999999999998888887775    111111  0100000      000000        0  00 


Q ss_pred             -------------------hhhHHHHHhhhhcCCCCCcch-----------------------h----------------
Q 014286          195 -------------------VKSSLAELSKLDRGDDGDIVK-----------------------F----------------  216 (427)
Q Consensus       195 -------------------~~~~~~~~~~~~~~~~~~~~~-----------------------~----------------  216 (427)
                                         .+...++..+++++++.+...                       .                
T Consensus       174 ~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f  253 (489)
T PRK10207        174 VTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVEVANLVLIVLSIVVTIIF  253 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence                               000000000000000000000                       0                


Q ss_pred             -H------hhhcccchhHHHHH--HHHHHhhhccchhHHHHhHHHHHHh--cCC--ChhHHHHHHHHHHHHHHHhHhhhh
Q 014286          217 -E------ELLYGRHFRVVFIG--STLFALQQLSGINAIFYFSSSVFKS--AGL--SSGLANVFVGIANLLGSVVAMVLM  283 (427)
Q Consensus       217 -~------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~g~--~~~~~~~~~~~~~~~~~~~~g~l~  283 (427)
                       .      +.+|+|.+....+.  ..+............+.+.+...++  .|.  .+........+..++..++.+++.
T Consensus       254 ~~~~~~~~~~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~  333 (489)
T PRK10207        254 FREAFKLDKTGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIY  333 (489)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHH
Confidence             0      11111111111100  1111111111112222222211111  122  222444445566667788889999


Q ss_pred             cccCccch-------hhhhhHHHHHHHHHHHHHhh--cCCCCCchhHHHHHHHHHHHHHHhhcccchhhhhccCcCCccc
Q 014286          284 DKLGRKAL-------LQWSFFSMAVSMAIQVAASS--SYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRI  354 (427)
Q Consensus       284 d~~g~~~~-------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  354 (427)
                      ||+++|+.       +.++.++.+++++.+.....  ...+...+.++.+....+.+.+.... .|....++.+..|++.
T Consensus       334 ~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~-~~~g~~~~~~~aP~~~  412 (489)
T PRK10207        334 THLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFI-SALGLAMIAALVPQHL  412 (489)
T ss_pred             HHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHH-hHHHHHHHHHhChHHH
Confidence            99998863       66777777777654432211  11112234455555566666666544 4444447788889999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHH----------HhccchhHHHHHHHHHHHHHHHHHh
Q 014286          355 RAKAMAVCMSVHWVINFFVGLLFLRLLE----------QLGPQLLYSIFGTFCLMAVAFVKRN  407 (427)
Q Consensus       355 ~g~~~g~~~~~~~~g~~~~~~~~g~l~~----------~~g~~~~~~~~~~~~~~~~~~~~~~  407 (427)
                      +|.++|+.+....+|+.++..+......          ...+...|...++..++..++.+..
T Consensus       413 ~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~~  475 (489)
T PRK10207        413 MGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMALM  475 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999888765421          1124566766776666655555443

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.77  E-value=6.4e-18  Score=163.05  Aligned_cols=114  Identities=15%  Similarity=0.174  Sum_probs=100.6

Q ss_pred             HHHHHHhhhhhccccccccchhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHhhHHHHHHH
Q 014286           53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGA  132 (427)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~  132 (427)
                      ++..++..+......+..++.++.++++|+++.++.  |++.+.+.++++++.++.|+++||+|||+.+.++++++++++
T Consensus        35 ~~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~--G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~  112 (633)
T TIGR00805        35 SLLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSS--GLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGS  112 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcc--eeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHH
Confidence            344455666666777888999999999999987777  999999999999999999999999999999999999999999


Q ss_pred             HHHHhhh---------------------------------------------------hhHHHHHHHHHHhhhccccccc
Q 014286          133 SISATTR---------------------------------------------------NLIGMLLGRFVVGTGMGLGPTV  161 (427)
Q Consensus       133 ~~~~~~~---------------------------------------------------~~~~l~~~r~l~G~~~g~~~~~  161 (427)
                      +++++.+                                                   .+..++++|+++|+|.+..++.
T Consensus       113 ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~  192 (633)
T TIGR00805       113 FLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPL  192 (633)
T ss_pred             HHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhc
Confidence            9998864                                                   2456789999999999999999


Q ss_pred             eeecccC
Q 014286          162 AALYVTE  168 (427)
Q Consensus       162 ~~~~i~~  168 (427)
                      +.+++.|
T Consensus       193 ~~~~i~d  199 (633)
T TIGR00805       193 GISYIDD  199 (633)
T ss_pred             Cchhhhc
Confidence            9999886

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.77  E-value=1.2e-18  Score=155.27  Aligned_cols=340  Identities=16%  Similarity=0.135  Sum_probs=191.8

Q ss_pred             hhhhccccccccchhhhhhhc-cCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHhhHHHH--HHHH-HH
Q 014286           60 SFLFGYHLGVVNEPLESISLD-LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMI--IGAS-IS  135 (427)
Q Consensus        60 ~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~--~~~~-~~  135 (427)
                      .+...+..+...|..|...++ .|++.++.  |.+.++..+...+.+|+.|.++||+|.||-++..+.+..  .+.. ..
T Consensus        16 ~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~i--G~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~   93 (412)
T PF01306_consen   16 YFFYFFIWGIFLPFFPIWLTQVAGLSGTEI--GIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIY   93 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH---HHHH--HHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHccccCCCHHHH--HHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            333344456667777766654 78876666  999999999999999999999999997665544332221  1222 11


Q ss_pred             Hhh----hhhH-HHHHHHHHHhhhccccccceeecccCCchh----hhhcCChHHHHHHHH-----HHhCCCc-------
Q 014286          136 ATT----RNLI-GMLLGRFVVGTGMGLGPTVAALYVTESPHW----LYKKGRTAEAEAEFE-----KLLGGSH-------  194 (427)
Q Consensus       136 ~~~----~~~~-~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~----~~~~~~~~~~~~~~~-----~~~~~~~-------  194 (427)
                      .+.    .|++ ..+++-+..|+......++..+++.+..|-    +.+.+.+....-...     .+...+.       
T Consensus        94 v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~sr~~~feYG~~R~wGSig~ai~s~~~G~L~~i~p~~~fwi~  173 (412)
T PF01306_consen   94 VFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVSRRNGFEYGRARMWGSIGFAIASLLAGILFNINPNIIFWIA  173 (412)
T ss_dssp             THHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHhcCCcchHHHHhhHHHHHHHHHhheeeeeCccHHHHHH
Confidence            222    2322 233333334444444445444444421110    000000000000000     0000000       


Q ss_pred             -----hh-----hHHHHHhh-----hhcCCCCCcch---hHhhhcccchhHHHHHHHHHHhhhccchhHHHHhHHHHHHh
Q 014286          195 -----VK-----SSLAELSK-----LDRGDDGDIVK---FEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKS  256 (427)
Q Consensus       195 -----~~-----~~~~~~~~-----~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (427)
                           ..     ...++.++     +.+..++++.+   ..+++|+|++|.+.+.......    .+.......+.+...
T Consensus       174 s~~~~il~lll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~k~~~fw~~~l~v~g~~~----~Y~vfdqqf~~y~~~  249 (412)
T PF01306_consen  174 SAAAIILLLLLLLLKPDVPPQAEVADALGAKKDKVSLKDVLSLFKMRNFWFFVLFVIGVAA----IYDVFDQQFPIYFAS  249 (412)
T ss_dssp             HHHHHHHHHHHHSS---SSSSS-SSTTSSS------HHHHHHHTTSHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCcCchhhhhhcccccCCCCCcHHHHHHHhcchhHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence                 00     00000000     00011112222   3466777777765554333322    233332223333333


Q ss_pred             cCCCh----h---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHH
Q 014286          257 AGLSS----G---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLM  329 (427)
Q Consensus       257 ~g~~~----~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (427)
                      +--+.    .   .......+..++.-.+..++.+|+|.|+.++++..++.+=....++..+        ++.....-.+
T Consensus       250 ~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~--------~~~i~~~klL  321 (412)
T PF01306_consen  250 FFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATN--------PWVISLIKLL  321 (412)
T ss_dssp             TSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--S--------HHHHHHHHHH
T ss_pred             HhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcc--------hHHHHHHHHH
Confidence            32222    2   3455555677788888999999999999999999999888888776543        2445555556


Q ss_pred             HHHHHhhcccchhhhhccCcCCccchhhHHHHH-HHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhc
Q 014286          330 FVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVC-MSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNV  408 (427)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~-~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  408 (427)
                      -+.-+.....+... |+++.+|++..++...+. +...+++.++.+.+.|.++|+.|++..|++.+.+.+...++..+.+
T Consensus       322 H~~e~~l~lva~fk-YI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l  400 (412)
T PF01306_consen  322 HALEFPLLLVAAFK-YITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTL  400 (412)
T ss_dssp             HHHHHHHHHHHHHH-HHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHH-HHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeee
Confidence            66666655566666 999999999989999885 6778899999999999999999999999999998888888887777


Q ss_pred             cCCCCC
Q 014286          409 VETKGK  414 (427)
Q Consensus       409 ~~~~~~  414 (427)
                      ++.++.
T Consensus       401 ~~~~~~  406 (412)
T PF01306_consen  401 KKDKKQ  406 (412)
T ss_dssp             --SSST
T ss_pred             cCCCcc
Confidence            655543

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PTZ00207 hypothetical protein; Provisional

Probab=99.77  E-value=7.9e-17  Score=151.38  Aligned_cols=323  Identities=13%  Similarity=0.067  Sum_probs=192.5

Q ss_pred             cchhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHhhHHHHHHHHHHHhh------hhhHHH
Q 014286           71 NEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT------RNLIGM  144 (427)
Q Consensus        71 ~~~~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~------~~~~~l  144 (427)
                      +...|.+++++|++.++.  +++.++. .....++++.|+++||+|||+++.++.+++++++++++++      ++++.+
T Consensus        47 sv~s~~L~~~lgls~~~l--~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l  123 (591)
T PTZ00207         47 NLISGAMQARYNLTQRDL--STITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRL  123 (591)
T ss_pred             HHHHHHHHHHhCcCHHHH--HHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHH
Confidence            456788999999876655  8887763 4456778889999999999999999999999999999997      689999


Q ss_pred             HHHHHHHhhhccccccceeeccc---------------------------------------------------------
Q 014286          145 LLGRFVVGTGMGLGPTVAALYVT---------------------------------------------------------  167 (427)
Q Consensus       145 ~~~r~l~G~~~g~~~~~~~~~i~---------------------------------------------------------  167 (427)
                      .+.|+++|+|.+...+.+...+.                                                         
T Consensus       124 ~l~r~l~G~G~~~~~~~~~~~i~~~Fp~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l~vl~~vv~ll~~~  203 (591)
T PTZ00207        124 SVYNGLMTLGCMLFDLGAVVTVLSVFPSNRGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFLMSFALVVGILAIV  203 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999998755544433322                                                         


Q ss_pred             -----CCchhhhhcCChHHHHHHHHHH--------------------------------------hCCC-----------
Q 014286          168 -----ESPHWLYKKGRTAEAEAEFEKL--------------------------------------LGGS-----------  193 (427)
Q Consensus       168 -----~~~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~-----------  193 (427)
                           +.++|....++..+........                                      ....           
T Consensus       204 ~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~v~  283 (591)
T PTZ00207        204 FMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIVFLPLQGALVAYLKLGSNFKVGFAVTV  283 (591)
T ss_pred             heeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence                 2222221111101111100000                                      0000           


Q ss_pred             -------c-hhhHHHHHh-----------h------------hh--------c-CCCCCcchhHhhhcccchhHHHHHHH
Q 014286          194 -------H-VKSSLAELS-----------K------------LD--------R-GDDGDIVKFEELLYGRHFRVVFIGST  233 (427)
Q Consensus       194 -------~-~~~~~~~~~-----------~------------~~--------~-~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (427)
                             . ...+.+...           +            .+        + ...+...++++.+++..+|.+++..+
T Consensus       284 ~~lll~~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~t~~q~l~~~d~Wll~~~~~  363 (591)
T PTZ00207        284 IVLTVIFPFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVETDVDYIAPQFQETFIEGLKTARLWCLLWSIF  363 (591)
T ss_pred             HHHHHHHHHHhhhHHHhccCCcCCCccccccccccccccccccccccccccccCCCCCCcchHHHHHhchhHHHHHHHHH
Confidence                   0 000000000           0            00        0 00011125667777778887777766


Q ss_pred             HHHhhhccchhHHHHhHHHHHHhc-CCC--h--h-HHHHHHHHHHHHHHHhHhhhhcccCcc--------ch-hhhhhHH
Q 014286          234 LFALQQLSGINAIFYFSSSVFKSA-GLS--S--G-LANVFVGIANLLGSVVAMVLMDKLGRK--------AL-LQWSFFS  298 (427)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~-g~~--~--~-~~~~~~~~~~~~~~~~~g~l~d~~g~~--------~~-~~~~~~~  298 (427)
                      +........    .+.+.++.+.. |.+  .  . ....+.++++.+|++..|.+.....+|        .. +.+..+ 
T Consensus       364 cg~g~gl~~----~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~-  438 (591)
T PTZ00207        364 CCVGAHFVI----IFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSV-  438 (591)
T ss_pred             HhhCchhee----eecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHH-
Confidence            665543332    23344555555 552  2  1 256888999999999999887222111        11 222222 


Q ss_pred             HHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHH-HHHH
Q 014286          299 MAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFV-GLLF  377 (427)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~-~~~~  377 (427)
                      +.++.+++.....     .   -.+.+..++.+++.+..+. +....++|+|. ++-|+-.-+.....-+|+.+- -.++
T Consensus       439 ~~~~~lll~~~~p-----~---~~L~~~~~lvg~~~G~~~~-~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~  508 (591)
T PTZ00207        439 CIITMLTLFLTLP-----K---AALPLPYFIAAFANGFMAA-TIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLY  508 (591)
T ss_pred             HHHHHHHHHHHCC-----c---cHhHHHHHHHHHHhhHhHH-HHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHH
Confidence            3444444333321     0   1344555555666654444 44448999999 888887777777666776665 5677


Q ss_pred             HHHHHHhc-------------cchhHHHHHHHHHHHHHHHHHhccCC
Q 014286          378 LRLLEQLG-------------PQLLYSIFGTFCLMAVAFVKRNVVET  411 (427)
Q Consensus       378 g~l~~~~g-------------~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (427)
                      |.++|.-.             ++.+|++.+++++++.++......++
T Consensus       509 G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R~  555 (591)
T PTZ00207        509 GEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVHLQY  555 (591)
T ss_pred             HHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhheeeeh
Confidence            88887532             67799999999988887765544443

>TIGR00901 2A0125 AmpG-related permease

Probab=99.75  E-value=6.2e-17  Score=147.47  Aligned_cols=291  Identities=15%  Similarity=0.062  Sum_probs=165.4

Q ss_pred             cccccchhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhccc-----chhHHH-HHhhHHHHHHHHHHHhh--
Q 014286           67 LGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV-----GRRRAF-QLCALPMIIGASISATT--  138 (427)
Q Consensus        67 ~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~-----Grr~~l-~~~~~~~~~~~~~~~~~--  138 (427)
                      ....++.+|.+.+|+|+|.++.  |+..+. .+...+ .+++|+++||+     ||||.+ +.+.++.++...+.++.  
T Consensus         4 ~~~~~~~~~~~~~~~g~s~~~~--g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~   79 (356)
T TIGR00901         4 LGLVGNTLPYWLRSKNVSLKTI--GFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVP   79 (356)
T ss_pred             chhHHhHHHHHHHHcCCCHHHH--HHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCc
Confidence            3556788999999999877765  888655 455555 99999999998     899974 67778888887777777  


Q ss_pred             -hhhHHHHHHHHHHhhhccccccceeecccCCchhhhhcCChHHHHHH------HHH------------HhCCC------
Q 014286          139 -RNLIGMLLGRFVVGTGMGLGPTVAALYVTESPHWLYKKGRTAEAEAE------FEK------------LLGGS------  193 (427)
Q Consensus       139 -~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~------~~~------------~~~~~------  193 (427)
                       .+++.+....++.|++.+...+...++++|.    ..++++..+...      +..            ..+..      
T Consensus        80 ~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~  155 (356)
T TIGR00901        80 STDLPLLAGLAFLIAFFSATQDIALDAWRLEI----LSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITL  155 (356)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----CCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccc
Confidence             4666777788888888877777777777652    111111111100      000            00000      


Q ss_pred             ch-----------hhHHH-H--HhhhhcCC--C-C----CcchhHhhhcccchhHHHHHHHHHHhhhccchhHHHHhHHH
Q 014286          194 HV-----------KSSLA-E--LSKLDRGD--D-G----DIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSS  252 (427)
Q Consensus       194 ~~-----------~~~~~-~--~~~~~~~~--~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (427)
                      +.           ..... .  .++.++.+  + +    .+..++++++++..+..........+... .......+.+.
T Consensus       156 wr~~f~i~ai~~l~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  234 (356)
T TIGR00901       156 WGYIFFWTALLILPGLLVTLFLAKEPQEDASVPKPLTQAVLKPIREFFQRKNMIQALLLLLLIVLYKL-GDSAATVLTTL  234 (356)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            00           00000 0  01110000  0 0    01234555666552222222222222222 22233334444


Q ss_pred             HHHhcCCChhHH---HHHHH-HHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCC-C--CCchhHHHHH
Q 014286          253 VFKSAGLSSGLA---NVFVG-IANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYI-P--GSASLYLSVG  325 (427)
Q Consensus       253 ~~~~~g~~~~~~---~~~~~-~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~  325 (427)
                      +.++.|.+....   ....+ +..+++.++++++.||+|+|+.+..+.++.+++...+.+...... .  +....+....
T Consensus       235 ~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (356)
T TIGR00901       235 FLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFL  314 (356)
T ss_pred             HHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHH
Confidence            545578877743   22233 456788999999999999999888888777766655444321100 0  0012233333


Q ss_pred             HHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHH
Q 014286          326 GMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHW  367 (427)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  367 (427)
                      +.++..++.+. ..+...++..|.+|+++||+..|+.+...+
T Consensus       315 ~~~l~~~~~~~-~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       315 TITLEAVTGGL-GTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             HHHHHHHHhHH-HHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence            33333443333 344555699999999999999999887654

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.75  E-value=7e-17  Score=144.86  Aligned_cols=334  Identities=13%  Similarity=0.073  Sum_probs=194.5

Q ss_pred             HHHHHHhhhhhccccccccchhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHhhHHHHHHH
Q 014286           53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGA  132 (427)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~  132 (427)
                      .+.+|+-.|+.- .+...+.+.|.+.+|+|++.++. .|.+.++++.++++++++.|.++||+|.|+++.++.+.+++.+
T Consensus        29 ~~~lC~fGF~~e-~R~n~s~a~p~L~~elglT~~qv-~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t  106 (511)
T TIGR00806        29 VLYLCFYGFMAQ-FRPGESFITPYLLTVLNFTEETV-TNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVW  106 (511)
T ss_pred             HHHHHHHHHHHH-hhchHHHHHHHHHHHcCCCHHHh-cchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence            444444444443 34566778899999999987772 3999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhHHHHHHHHHHhhhccccccceeecccCCchhhhhcCChHHHHHH---------------------------
Q 014286          133 SISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTESPHWLYKKGRTAEAEAE---------------------------  185 (427)
Q Consensus       133 ~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~---------------------------  185 (427)
                      ++.++++++..+.+.|++.|++.|..+ ....++..   |+.. +++..+...                           
T Consensus       107 ~L~~fa~Sl~~L~i~R~llGvaEA~~~-A~~syI~~---WfP~-kER~ratsi~~sg~~vG~~Ia~~L~qll~s~gWr~y  181 (511)
T TIGR00806       107 LLLLLGTSVWHMQLMEVFYSVTMAARI-AYSSYIFS---LVPP-SRYQRAAAYSRAAVLLGVFLSSVLGQLLVTLGWISY  181 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH---HCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhH
Confidence            999999999999999999999999998 66666663   1111 111100000                           


Q ss_pred             ------------HHHHh--CCCchhhHHH-------------HHhhhhcCCC--C---Cc----c-------hhHhhhcc
Q 014286          186 ------------FEKLL--GGSHVKSSLA-------------ELSKLDRGDD--G---DI----V-------KFEELLYG  222 (427)
Q Consensus       186 ------------~~~~~--~~~~~~~~~~-------------~~~~~~~~~~--~---~~----~-------~~~~~~~~  222 (427)
                                  +..+.  ..+..+...-             +.+...+++.  .   .+    .       .+++..++
T Consensus       182 ~~Ln~Isl~s~~~a~~~a~~LP~~~~sl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~n  261 (511)
T TIGR00806       182 STLNIISLVFMTFSVFLALFLKRPKRSLFFNRLEDVRGALPCELDQMVPGPGGKLEDYLGTCRDSFLVRMLSELVTIYRN  261 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCchhhhhccccccccccccccccCCCCCccccchhhhhhhhHHHHHHHHHHHHHhcC
Confidence                        00000  0000000000             0000000000  0   00    0       11122333


Q ss_pred             cchhHHHHHHHHHHhhhccchhHHHHhHHHHHHhcCCC----hhHHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHH
Q 014286          223 RHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLS----SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFS  298 (427)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~----~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~  298 (427)
                      +..    +-..++.....+++.-+.+|.+.+-++..-+    .+..-++..+.+.+.++..|++-.++.+..-+.++.+.
T Consensus       262 ~~v----l~WSlWwa~a~~g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s  337 (511)
T TIGR00806       262 PQL----LLWSLWWVFNSAGYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVS  337 (511)
T ss_pred             cch----hhhhHHHHHHhhHHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHH
Confidence            322    2233333444446667777777776554221    12455566667777888889986666443333333333


Q ss_pred             HHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHH-
Q 014286          299 MAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLF-  377 (427)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~-  377 (427)
                      ..-+.+++...      ...+.|...+..+++...+.+...-... -++.....+.-|...|+.+++..+-..+-..+. 
T Consensus       338 ~~~~gll~~m~------~t~~Iw~~Y~~yvlf~~~y~flitia~~-~iA~~L~~~~~aLvFGiNtfvAl~LQtilT~iVv  410 (511)
T TIGR00806       338 AIQAGLVFWMS------QSHDIWVLYVTYVLFRGIYQFLVPIATF-QIASSLSKELCALVFGINTFVATALKTIITAVVS  410 (511)
T ss_pred             HHHHHHhhhhh------cccchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcccceEEEEecHHHHHHHHHHheEEEEE
Confidence            32222222211      2345677777777777777654433333 445545656679999998888776665555443 


Q ss_pred             ---HHHHHH---h-ccchhHHHHHHHHHHHHHHH
Q 014286          378 ---LRLLEQ---L-GPQLLYSIFGTFCLMAVAFV  404 (427)
Q Consensus       378 ---g~l~~~---~-g~~~~~~~~~~~~~~~~~~~  404 (427)
                         |.-.+.   + =|...|.+++++.++..++.
T Consensus       411 d~~gl~l~i~~Qf~vY~~yf~~~~~i~~~~~~~~  444 (511)
T TIGR00806       411 DKRGLGLQVRKQFRIYSVYFLVLSIICFFGAGLD  444 (511)
T ss_pred             cccccCCCceeEEEehhhHHHHHHHHHHHHHHHH
Confidence               110111   1 14445666666665554443

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.74  E-value=1.5e-16  Score=150.31  Aligned_cols=97  Identities=18%  Similarity=0.256  Sum_probs=77.1

Q ss_pred             ccchhh-hhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcc-cchhHHHHHhhHHHHHHHHHHHhhh-hhHHHHH
Q 014286           70 VNEPLE-SISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG-VGRRRAFQLCALPMIIGASISATTR-NLIGMLL  146 (427)
Q Consensus        70 ~~~~~~-~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~-~~~~l~~  146 (427)
                      ..+.++ .+.+++|++.++.  +++.+.+........+++|+++|| +|||++++.+.++++++.+++++++ +.+.+.+
T Consensus        40 ~~~~l~~yl~~~lg~s~~~a--~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~  117 (500)
T PRK09584         40 LQGIMAVYLVKQLGMSEADS--ITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYM  117 (500)
T ss_pred             HHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence            334444 5568899876655  677777776666667899999999 5999999999999999999999874 5667788


Q ss_pred             HHHHHhhhccccccceeecccC
Q 014286          147 GRFVVGTGMGLGPTVAALYVTE  168 (427)
Q Consensus       147 ~r~l~G~~~g~~~~~~~~~i~~  168 (427)
                      +|+++|+|.|...+...+++.|
T Consensus       118 ~~~l~gig~g~~~~~~~~l~~~  139 (500)
T PRK09584        118 GMATIAVGNGLFKANPSSLLST  139 (500)
T ss_pred             HHHHHHHhhhcccCCHHHHHHH
Confidence            9999999999887777666664

>PRK09848 glucuronide transporter; Provisional

Probab=99.72  E-value=1.5e-16  Score=149.35  Aligned_cols=299  Identities=11%  Similarity=0.025  Sum_probs=165.4

Q ss_pred             hhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhccc----chhHHH-HHhhHHHHHHHHHHH-hh----h--hhH
Q 014286           75 ESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV----GRRRAF-QLCALPMIIGASISA-TT----R--NLI  142 (427)
Q Consensus        75 ~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~----Grr~~l-~~~~~~~~~~~~~~~-~~----~--~~~  142 (427)
                      +.+.+.+|++..+.  |.+.+...+..++..+++|.++||.    ||||.. ..+.+...+.+++.. ..    +  ...
T Consensus        33 ~y~~~~~gl~~~~~--g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (448)
T PRK09848         33 SYYTDVAGVGAAAA--GTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVV  110 (448)
T ss_pred             HHHHHHcCCCHHHH--HHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHH
Confidence            45666778765544  9999999999999999999999996    777755 555555554444432 21    1  123


Q ss_pred             HHHHHHHHHhhhccccccceeecccCCchhhhhcCCh---HHH---H--HH--------HHHHhCCCchh----h-----
Q 014286          143 GMLLGRFVVGTGMGLGPTVAALYVTESPHWLYKKGRT---AEA---E--AE--------FEKLLGGSHVK----S-----  197 (427)
Q Consensus       143 ~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~~~---~~~---~--~~--------~~~~~~~~~~~----~-----  197 (427)
                      ..++.-++.+++.+...+...++..+-.+-...+.+.   ...   .  ..        +....+.....    .     
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~  190 (448)
T PRK09848        111 YAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWTIVLA  190 (448)
T ss_pred             HHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHH
Confidence            3444556667776666554444333210000000000   000   0  00        00000000000    0     


Q ss_pred             ---------HHHHHhhhhcCCC---CCcchhHhhhcccchhHHHHHHHHHHhhhccchhHHHHhHHHHHH-hcCCChh--
Q 014286          198 ---------SLAELSKLDRGDD---GDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFK-SAGLSSG--  262 (427)
Q Consensus       198 ---------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~--  262 (427)
                               .....++..+++.   ..+..++.+++++.+....+..++.........    ...+++.+ ..|.+..  
T Consensus       191 v~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~l~~n~~f~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~~~~~~  266 (448)
T PRK09848        191 IAGMVLYFICFKSTRENVVRIVAQPSLKISLQTLKRNRPLFMLCIGALCVLISTFAVS----ASSLFYVRYVLNDTGLFT  266 (448)
T ss_pred             HHHHHHHHHHHcCcEeccCCCccCCCHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHh----hhheeeEeeecCChHHHH
Confidence                     0000011111111   112335668888887766555555444322222    22333322 2344333  


Q ss_pred             -HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcccch
Q 014286          263 -LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPV  341 (427)
Q Consensus       263 -~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (427)
                       .......++.+++.++.+++.||+|+|+.+..+..+..++.+.+.+..      ....+.......+.+.+.+... +.
T Consensus       267 ~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~------~~~~~~~~~~~~l~g~G~~~~~-~~  339 (448)
T PRK09848        267 VLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVS------VWSLPVALVALAIASIGQGVTM-TV  339 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcC------chhHHHHHHHHHHHHHHHHHHH-HH
Confidence             222223455677888999999999999999998887777766554321      1222333333444444444333 44


Q ss_pred             hhhhccCcCCcc-------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 014286          342 PSLLLPEIFPSR-------IRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGP  386 (427)
Q Consensus       342 ~~~~~~~~~p~~-------~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~  386 (427)
                      ..++.+|..|.+       .+|...|+.+....+|..+++.+.+.+.+..||
T Consensus       340 ~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~  391 (448)
T PRK09848        340 MWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGY  391 (448)
T ss_pred             HHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            455777776543       469999999999999999999999999887775

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.71  E-value=3.1e-16  Score=134.27  Aligned_cols=286  Identities=17%  Similarity=0.144  Sum_probs=154.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHhhHHHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccceeeccc
Q 014286           88 LAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVT  167 (427)
Q Consensus        88 ~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~  167 (427)
                      .-.|.+.|.|.++..+.++.||.++||||||++++++++..+++.++.+++.||..+++.|++.|+..|-..+ ..+++.
T Consensus        68 ~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl~v-~rAiis  146 (451)
T KOG2615|consen   68 FYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNLSV-IRAIIS  146 (451)
T ss_pred             hhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchHH-HHHHHH
Confidence            3359999999999999999999999999999999999999999999999999997777779999998874433 333444


Q ss_pred             CC--ch-------------------------hhh----hcCChHHHH-HHHHHHhCCC-------chhhHHHHHhhhhcC
Q 014286          168 ES--PH-------------------------WLY----KKGRTAEAE-AEFEKLLGGS-------HVKSSLAELSKLDRG  208 (427)
Q Consensus       168 ~~--~~-------------------------~~~----~~~~~~~~~-~~~~~~~~~~-------~~~~~~~~~~~~~~~  208 (427)
                      |-  ++                         ++.    ..++...+. ..+..+....       ..++.++..++.++.
T Consensus       147 dV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL~~rk~~~~~  226 (451)
T KOG2615|consen  147 DVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETLPLRKRNDEH  226 (451)
T ss_pred             hhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCccccchhhcccc
Confidence            21  00                         011    111111111 1111100000       001111110000000


Q ss_pred             --------CCCCcchhH-----hhhcccchhHHHHHHHHHHhhhcc---chhHHHHhHHHH-HHhcCCChhH---HHHHH
Q 014286          209 --------DDGDIVKFE-----ELLYGRHFRVVFIGSTLFALQQLS---GINAIFYFSSSV-FKSAGLSSGL---ANVFV  268 (427)
Q Consensus       209 --------~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~g~~~~~---~~~~~  268 (427)
                              .+.+..+..     ..++++................+.   .+....++...+ .+.+|+++..   +....
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G~vl~~t  306 (451)
T KOG2615|consen  227 STLQEAADDRLALLKFARIFKVAALRNPPLLDFISVLRIFGLHYFLYLELFSGLENTVLFLTHGRFGYSSMQQGKVLSTT  306 (451)
T ss_pred             cchhhhhhhhhhhcchhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCccCCChhhheeeeehh
Confidence                    000000111     123333333222222222222221   222222222222 2556777663   44444


Q ss_pred             HHHHHHHHHhHhhhhcccC--ccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcccchhhhhc
Q 014286          269 GIANLLGSVVAMVLMDKLG--RKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLL  346 (427)
Q Consensus       269 ~~~~~~~~~~~g~l~d~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (427)
                      ++.+.+......+..||.+  .+..+..+..++.-.++++.....        +........+..+... ...+....++
T Consensus       307 Gl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~--------~~~l~~~s~l~sf~~A-~~vt~Lt~Lv  377 (451)
T KOG2615|consen  307 GLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLART--------PVVLYLGSTLKSFSTA-SVVTCLTSLV  377 (451)
T ss_pred             hHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhcccc--------chhhhHHHHHHHHHHH-HhhHHHHHHH
Confidence            5555554444455555544  333444444443333333332221        1223333333333333 3344455588


Q ss_pred             cCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014286          347 PEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQ  383 (427)
Q Consensus       347 ~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~  383 (427)
                      ....|+++||++.|+..+.+.++-++||.+.|.+...
T Consensus       378 ~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~W  414 (451)
T KOG2615|consen  378 HKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSW  414 (451)
T ss_pred             HhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEE
Confidence            8899999999999999999999999999999877653

>PRK09669 putative symporter YagG; Provisional

Probab=99.69  E-value=6.7e-16  Score=144.72  Aligned_cols=301  Identities=13%  Similarity=0.107  Sum_probs=168.8

Q ss_pred             hhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcc----cchh-HHHHHhhHHHHHHHHHHHhhhh------h
Q 014286           73 PLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG----VGRR-RAFQLCALPMIIGASISATTRN------L  141 (427)
Q Consensus        73 ~~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr----~Grr-~~l~~~~~~~~~~~~~~~~~~~------~  141 (427)
                      +.+.+.+++|++....  |.+.++..+..++..|+.|.++||    +||| +.++.+.+..+++.++....++      +
T Consensus        32 l~~~~t~~~gls~~~~--g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~  109 (444)
T PRK09669         32 LAYFYTDVFGLSAAIM--GTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKI  109 (444)
T ss_pred             HHHHHHHhcCCCHHHH--HHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHH
Confidence            3456777889876655  999999999999999999999999    7875 5556777777777766555543      4


Q ss_pred             HHHHHHHHHHhhhccccccceeecccCCchhhhhcCCh---HHHHHHH----H--------HHhCCCchhhH--------
Q 014286          142 IGMLLGRFVVGTGMGLGPTVAALYVTESPHWLYKKGRT---AEAEAEF----E--------KLLGGSHVKSS--------  198 (427)
Q Consensus       142 ~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~~~---~~~~~~~----~--------~~~~~~~~~~~--------  198 (427)
                      ..+++..++.+.+.......-.++.+|-.+-...+.+.   .......    .        ...+.......        
T Consensus       110 ~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~  189 (444)
T PRK09669        110 IYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVM  189 (444)
T ss_pred             HHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHH
Confidence            55566666666655544444444544311000000000   0000000    0        00000000000        


Q ss_pred             ---------HHH--Hhhh--hc--CCCCCcchhHhhhcccchhHHHHHHHHHHhhhccchhHHHHhHHHHHHhcCCChh-
Q 014286          199 ---------LAE--LSKL--DR--GDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSG-  262 (427)
Q Consensus       199 ---------~~~--~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-  262 (427)
                               ..-  .++.  ++  ++.+....++.+++++.++..+...++.............+|..+..   + +.. 
T Consensus       190 ~ii~~v~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~n~~~~~l~~~~~~~~~~~~~~~~~~~y~~~~~~---~-~~~~  265 (444)
T PRK09669        190 GLLGVVLFFCCFFMTKERYTPEVDNSSSVWKDLKLLLGNSQWRIMFIFNVVLLTAVVTRGGATLYYVNYVL---L-RPDL  265 (444)
T ss_pred             HHHHHHHHHHHhCCeEEecCCCCcCCCCHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHhhhhheeeeeec---C-CHHH
Confidence                     000  0010  00  01111334667788888777665554443322211222222222222   1 122 


Q ss_pred             --HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcccc
Q 014286          263 --LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGP  340 (427)
Q Consensus       263 --~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (427)
                        .......+..+++.++.+++.||+|+|+.+..+..+.++....+....      ..+.+...+...+.+.+.+ ...+
T Consensus       266 ~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~i~g~~~~-~~~~  338 (444)
T PRK09669        266 ATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIP------PSNVWLIFALNILFNFIQN-LTTP  338 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhC------cchHHHHHHHHHHHHHHHH-HHHH
Confidence              233344566778888999999999999988877665554333222221      1222333333444444444 3346


Q ss_pred             hhhhhccCcCC-------ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 014286          341 VPSLLLPEIFP-------SRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGP  386 (427)
Q Consensus       341 ~~~~~~~~~~p-------~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~  386 (427)
                      ..+++++|..+       .+..|...|..+.+..+|..+++.+.|.+.+..|+
T Consensus       339 ~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy  391 (444)
T PRK09669        339 LQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY  391 (444)
T ss_pred             HHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            66768888764       23456778999999999999999999999998887

>TIGR00788 fbt folate/biopterin transporter

Probab=99.67  E-value=3.3e-15  Score=139.96  Aligned_cols=334  Identities=14%  Similarity=0.078  Sum_probs=193.8

Q ss_pred             HHHHHHhhhhhccccccccchhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccc-----hhHHHHHhhHH
Q 014286           53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVG-----RRRAFQLCALP  127 (427)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G-----rr~~l~~~~~~  127 (427)
                      ..++...++..++.........|.+.+++|++.++.  +...+...+...+-.+ +|+++||++     ||+.++++.++
T Consensus        28 ~~~~~~~y~~qGl~~l~~~~~~~~l~~~lg~s~~~i--~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l  104 (468)
T TIGR00788        28 LAIGLQVLFVKGIAGLMRLPLSPMLTDDLGLDGARY--QRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLL  104 (468)
T ss_pred             HHHHHHHHHHhhHHHHhhhhhhHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHH
Confidence            344555567777763333445567777899877666  7889999999998666 999999998     77877887766


Q ss_pred             HH-HHHHHHHhhhhhHHH-HHHHHHHhhhccccccceeecccCCchhhhhcCC---hHH-------HHHHHHHHh-----
Q 014286          128 MI-IGASISATTRNLIGM-LLGRFVVGTGMGLGPTVAALYVTESPHWLYKKGR---TAE-------AEAEFEKLL-----  190 (427)
Q Consensus       128 ~~-~~~~~~~~~~~~~~l-~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~~---~~~-------~~~~~~~~~-----  190 (427)
                      .+ +.....+..++.... .+.+++.+++.+..-+...++..|.-+  .....   ...       ....+....     
T Consensus       105 ~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~--~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~  182 (468)
T TIGR00788       105 GSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR--ESPSAGPSLVSWMWGASATGGLISSLLGGPLL  182 (468)
T ss_pred             HHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh--cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHH
Confidence            63 333333434554444 458899999999888888888877432  11100   000       001110000     


Q ss_pred             ---CCCch---------hhH--HHHHhhhh---cCCCCC--------------------cchhHhhhcccchhHHHHHHH
Q 014286          191 ---GGSHV---------KSS--LAELSKLD---RGDDGD--------------------IVKFEELLYGRHFRVVFIGST  233 (427)
Q Consensus       191 ---~~~~~---------~~~--~~~~~~~~---~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~  233 (427)
                         +....         ...  ....++++   ..+..+                    ....++.++++..+..++..+
T Consensus       183 ~~~~~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~i~~~l~fif  262 (468)
T TIGR00788       183 DKTLTRILFLITAALLLLQLFVSNLSKERRAFVRPRIGTYLEMNMALLTLGVLANVKVQILGLRGAIQLLEIAKPLIFIF  262 (468)
T ss_pred             HhcCcchHHHHHHHHHHHHHHHHHhcccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHHHhcHHHHHHHHHHH
Confidence               00000         000  00001110   000000                    011233344454444333333


Q ss_pred             H-HHhhhccchhHHHHhHHHHHHhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHH
Q 014286          234 L-FALQQLSGINAIFYFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAA  309 (427)
Q Consensus       234 ~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~  309 (427)
                      + +... .....  ..+. ...+..|.++.   ......+++.+++..+.+++.+|++.|+.+.++.++.+++.......
T Consensus       263 l~~~~~-~~~~~--~~f~-~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l  338 (468)
T TIGR00788       263 LSYANL-PGASG--SVFC-ATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLIL  338 (468)
T ss_pred             HHHhhc-CCCCc--eeEE-EEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceee
Confidence            3 1111 11111  1111 11134677766   45666778888899999999999999999888888877766443211


Q ss_pred             hhcCCCC--CchhHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc--
Q 014286          310 SSSYIPG--SASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLG--  385 (427)
Q Consensus       310 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g--  385 (427)
                      .......  ....+.......+...+.+....+... ++.+..|++.+|+..++.+++.++|..+++.++|.+.+..|  
T Consensus       339 ~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~-~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~  417 (468)
T TIGR00788       339 VKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPFLV-LLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGIT  417 (468)
T ss_pred             eeccccccCCCCeeeeeehhHHHHHHHHHHHccHHH-HHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            1111000  011223333344555555556666655 88999999999999999999999999999999999999888  


Q ss_pred             ---cchhHHHHHHH
Q 014286          386 ---PQLLYSIFGTF  396 (427)
Q Consensus       386 ---~~~~~~~~~~~  396 (427)
                         ++..+....+.
T Consensus       418 ~~~~~~~~~~i~i~  431 (468)
T TIGR00788       418 CDNSNNLWLLILGH  431 (468)
T ss_pred             cccccchHHHHHHH
Confidence               66555544333

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.66  E-value=5.4e-15  Score=139.47  Aligned_cols=313  Identities=13%  Similarity=0.109  Sum_probs=167.9

Q ss_pred             ccccccccchhh-hhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhc----ccch-hHHHHHhhHHHHHHHHHHHh
Q 014286           64 GYHLGVVNEPLE-SISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIAD----GVGR-RRAFQLCALPMIIGASISAT  137 (427)
Q Consensus        64 ~~~~~~~~~~~~-~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~d----r~Gr-r~~l~~~~~~~~~~~~~~~~  137 (427)
                      .+..+.+.+.++ .+.+.+|++....  |.+..+.-+.-++..|++|.++|    |+|| |+.++.+.+..+++..++-.
T Consensus        19 ~~~~~~~~~~l~~yyt~v~Gls~~~v--g~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~   96 (473)
T PRK10429         19 DFAIGIVYMYLMYYYTDVVGLSVGLV--GTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFS   96 (473)
T ss_pred             hHHHHHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHc
Confidence            333344444444 4555668765544  99999999999999999999999    6698 55567788887777666644


Q ss_pred             hhh------hHHHHHHHHHHhhhccccccceeecccCCchhhhhcCC---h----HHHHHHHH----H-H---hCCCchh
Q 014286          138 TRN------LIGMLLGRFVVGTGMGLGPTVAALYVTESPHWLYKKGR---T----AEAEAEFE----K-L---LGGSHVK  196 (427)
Q Consensus       138 ~~~------~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~~---~----~~~~~~~~----~-~---~~~~~~~  196 (427)
                      .++      +..+++.-++.+++.....+.-.++.+|-.+-...+.+   .    ......+.    . +   .+.....
T Consensus        97 ~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~  176 (473)
T PRK10429         97 AHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRG  176 (473)
T ss_pred             CCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchh
Confidence            332      33455556666666655555555555541100000000   0    00000000    0 0   0100000


Q ss_pred             h----------------HHHH---Hhhh---h--cCCCCCcchh----HhhhcccchhHHHHHHHHHHhhhccchhHHHH
Q 014286          197 S----------------SLAE---LSKL---D--RGDDGDIVKF----EELLYGRHFRVVFIGSTLFALQQLSGINAIFY  248 (427)
Q Consensus       197 ~----------------~~~~---~~~~---~--~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (427)
                      .                ....   .++.   +  +.+++++.++    +.+++++.++..+...++....    ......
T Consensus       177 ~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~ll~~~~~~~~~----~~~~~~  252 (473)
T PRK10429        177 FGFQMFTLVLIAFFIVSTIITLRNVHEVYSSDNQVSAEGSHLTLKDIVALIYKNDQLSCLLGMALAYNIA----SNIING  252 (473)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHcCceecCCccccccccccCCCHHHHHHHHhcCHHHHHHHHHHHHHHHH----HHHHhh
Confidence            0                0000   0110   0  0011112233    3444565555544444433332    222222


Q ss_pred             hHHHHHHhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHH
Q 014286          249 FSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVG  325 (427)
Q Consensus       249 ~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (427)
                      +.+++.+....+..   .......+..+++.++.+++.||+|+|+.+..+..+..++.+.+......   .....+..++
T Consensus       253 ~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i  329 (473)
T PRK10429        253 FAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLA---APHNALLIVI  329 (473)
T ss_pred             heeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhcc---CchhHHHHHH
Confidence            22333332222222   34444557778888999999999999999888777666555444332111   1122233333


Q ss_pred             HHHHHHHHHhhcccchhhhhccCcCC-------ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 014286          326 GMLMFVLTFALGAGPVPSLLLPEIFP-------SRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGP  386 (427)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~  386 (427)
                      ...+.+.+.+.. .+...++.+|..+       .+..|...|....+..++..+++.+.|.+.+..||
T Consensus       330 ~~~l~g~~~~~~-~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy  396 (473)
T PRK10429        330 AGILLNIGTALF-WVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY  396 (473)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            334444444433 3445557888755       34456688999999999999999999999988776

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.65  E-value=4.3e-14  Score=130.36  Aligned_cols=343  Identities=13%  Similarity=0.098  Sum_probs=195.4

Q ss_pred             hhhccccccccchhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhc----ccchhHHHHHh-hHHHHHHHHHH
Q 014286           61 FLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIAD----GVGRRRAFQLC-ALPMIIGASIS  135 (427)
Q Consensus        61 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~d----r~Grr~~l~~~-~~~~~~~~~~~  135 (427)
                      +-..+......+.++.+.+++|.+....  +++..+..+...+.+++.|.++|    |+||||.++++ .....++.++.
T Consensus        14 ~Giq~~~~l~~~~l~~yl~~lg~~~~~~--~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll   91 (477)
T TIGR01301        14 AGVQFGWALQLSLLTPYVQELGIPHAWA--SIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILI   91 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHH
Confidence            3334455566667777888999865444  99999999999999999999999    59999998774 66666777777


Q ss_pred             HhhhhhHHH-----------------HHHHHHHhhhccccccceeecccCCchhhhhcCCh--HHHHH----------HH
Q 014286          136 ATTRNLIGM-----------------LLGRFVVGTGMGLGPTVAALYVTESPHWLYKKGRT--AEAEA----------EF  186 (427)
Q Consensus       136 ~~~~~~~~l-----------------~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~~~--~~~~~----------~~  186 (427)
                      ++++++..+                 +++-.+..++.....+...++++|.    ...++.  ..+..          .+
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl----~p~~~~~~~~a~~~~~~~~~lG~il  167 (477)
T TIGR01301        92 GFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADL----TGGDARRTRIANAYFSFFMAIGNVL  167 (477)
T ss_pred             HhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc----cCchhHHHHHHHHHHHHHHHHHHHH
Confidence            777665322                 2222233335555555666667762    111110  11111          00


Q ss_pred             HHHhCC------------------------------------------CchhhHHH----HH--hhhh-cCCCCCcchhH
Q 014286          187 EKLLGG------------------------------------------SHVKSSLA----EL--SKLD-RGDDGDIVKFE  217 (427)
Q Consensus       187 ~~~~~~------------------------------------------~~~~~~~~----~~--~~~~-~~~~~~~~~~~  217 (427)
                      ....+.                                          ...++...    +.  ++.+ .++......++
T Consensus       168 g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (477)
T TIGR01301       168 GYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINSEAAPPSKHGEEAFFG  247 (477)
T ss_pred             HHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhhhcccccccchhhhHH
Confidence            000000                                          00000000    00  0000 00001112234


Q ss_pred             hhhcc-----cchhHHHHHHHHHHhhhccchhHHHHhHHHHHH-hcCCC--------hh-----HHHHHHHHHHHHHHHh
Q 014286          218 ELLYG-----RHFRVVFIGSTLFALQQLSGINAIFYFSSSVFK-SAGLS--------SG-----LANVFVGIANLLGSVV  278 (427)
Q Consensus       218 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~--------~~-----~~~~~~~~~~~~~~~~  278 (427)
                      +++++     +..+.+.+..++.   .++.+....|...++-+ .++.+        .+     +.....++...+.+++
T Consensus       248 ~i~~~~~~mP~~m~~l~~vqffs---W~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~  324 (477)
T TIGR01301       248 ELFGAFKYLPRPVWILLLVTCLN---WIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIG  324 (477)
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHH---HHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44332     2233333332222   22222222222232221 12211        11     3445555666677778


Q ss_pred             HhhhhcccCc-cchhhhhhHHHHHHHHHHHHHhhcCCC-------------CCchhHHHHHHHHHHHHHHhhcccchhhh
Q 014286          279 AMVLMDKLGR-KALLQWSFFSMAVSMAIQVAASSSYIP-------------GSASLYLSVGGMLMFVLTFALGAGPVPSL  344 (427)
Q Consensus       279 ~g~l~d~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (427)
                      ..++.+|+|+ |.....+.++.++++....+......+             .....+..++.+...++.++. ...++++
T Consensus       325 l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~-~~siPfa  403 (477)
T TIGR01301       325 MEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAI-TYSIPFA  403 (477)
T ss_pred             HHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHH-HHHHhHH
Confidence            8899999985 677788888888888777655431100             000124444555555555543 3566777


Q ss_pred             hccCcCCc--cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHHHHHhccCCCC
Q 014286          345 LLPEIFPS--RIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLG--PQLLYSIFGTFCLMAVAFVKRNVVETKG  413 (427)
Q Consensus       345 ~~~~~~p~--~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (427)
                      ++++..|+  +..|..+|+.|.+..+.+.+.....|.+.+..|  ....+.+.++..+++++...+.+|+.+.
T Consensus       404 l~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~~  476 (477)
T TIGR01301       404 LASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRPRV  476 (477)
T ss_pred             HHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            88888774  456999999999999999999999898777666  4556767777778888888888887654

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.65  E-value=2.6e-14  Score=133.30  Aligned_cols=305  Identities=16%  Similarity=0.141  Sum_probs=196.8

Q ss_pred             hhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhc----ccchhHHH-HHhhHHHHHHHHHHHhh-h-------
Q 014286           73 PLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIAD----GVGRRRAF-QLCALPMIIGASISATT-R-------  139 (427)
Q Consensus        73 ~~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~d----r~Grr~~l-~~~~~~~~~~~~~~~~~-~-------  139 (427)
                      ..+.+.+.+|++....  |.+..+..+-.++..|+.|.++|    |+||||.. +.+.++.+++.+++... +       
T Consensus        24 ~~~f~~~~~gl~~~~~--g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~  101 (428)
T PF13347_consen   24 LLYFYTDVLGLSPALA--GLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTA  101 (428)
T ss_pred             HHHHHHHHcCCCHHHH--HHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhh
Confidence            4556667778765554  99999999999999999999999    89977665 56778888888877765 4       


Q ss_pred             hhHHHHHHHHHHhhhccccccceeecccCCchhhhhcCCh---HHHHHHHHHH------------hCCCch----h----
Q 014286          140 NLIGMLLGRFVVGTGMGLGPTVAALYVTESPHWLYKKGRT---AEAEAEFEKL------------LGGSHV----K----  196 (427)
Q Consensus       140 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~~~---~~~~~~~~~~------------~~~~~~----~----  196 (427)
                      .+..+.+.-++..++.......-.++.+|-.+-...+.+.   ......+...            .+....    .    
T Consensus       102 ~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~  181 (428)
T PF13347_consen  102 KLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMAL  181 (428)
T ss_pred             HHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHH
Confidence            2334567777778887777766666666522101011110   0000000000            000000    0    


Q ss_pred             --------------hHHHH---HhhhhcCCCCCcchhHhhhcccchhHHHHHHHHHHhhhccchhHHHHhHHHHHHhcCC
Q 014286          197 --------------SSLAE---LSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGL  259 (427)
Q Consensus       197 --------------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  259 (427)
                                    ...+|   ..+.++++.+-+..+++++++|.++..+...++.............+|..+..+..+.
T Consensus       182 v~~iv~~v~~~i~~~~~ke~~~~~~~~~~~~~~~~~~~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~~~  261 (428)
T PF13347_consen  182 VLAIVGLVFFLITFFFVKERSVEVTEQEKKISLRDSLRSLFRNRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNEGL  261 (428)
T ss_pred             HHHHHHHHHhhhhhheeeeccccccccccccccccchhhhcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCchh
Confidence                          00011   0001111112234567788888888777777776665555555556666655544321


Q ss_pred             ChhHHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhccc
Q 014286          260 SSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAG  339 (427)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (427)
                       .+.......+..+++.++.++++||+|+|+.+..+..+.+++.+++.+...      .+.+...+...+.+.+.+.. .
T Consensus       262 -~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~i~~~l~gi~~~~~-~  333 (428)
T PF13347_consen  262 -ISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGP------GSPWLVLILFILAGIGYGAF-F  333 (428)
T ss_pred             -hHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHh------hhHHHHHHHHHHhHhhhccc-c
Confidence             224556677888899999999999999999999999999998888776652      22244455555555555543 3


Q ss_pred             chhhhhccCcCC-------ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 014286          340 PVPSLLLPEIFP-------SRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQ  387 (427)
Q Consensus       340 ~~~~~~~~~~~p-------~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~  387 (427)
                      ....++.+|+.+       ++..|...|+.+....++..+++.+.+.+.+..|+.
T Consensus       334 ~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy~  388 (428)
T PF13347_consen  334 VIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVGYD  388 (428)
T ss_pred             cccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhCcC
Confidence            555668888776       244689999999999999999999999999887754

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.64  E-value=2e-13  Score=119.51  Aligned_cols=302  Identities=15%  Similarity=0.153  Sum_probs=185.7

Q ss_pred             chhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHH-HHhhHHHHHHHHHHHhhhh--h-HHHHHHHHHHhhhccccccc
Q 014286           86 NTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAF-QLCALPMIIGASISATTRN--L-IGMLLGRFVVGTGMGLGPTV  161 (427)
Q Consensus        86 ~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l-~~~~~~~~~~~~~~~~~~~--~-~~l~~~r~l~G~~~g~~~~~  161 (427)
                      ++...|...++..+..++-+|+.|.++|+.|+||.. -+...+..+++.+..++++  + +..++.-.+..++.....+.
T Consensus        56 ~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vf  135 (438)
T COG2270          56 STAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVF  135 (438)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhhee
Confidence            344458888999999999999999999999976655 5555566666666666654  4 44566677788888777777


Q ss_pred             eeecccCCchhhhhcCCh-------------HHHHH---HHHHHhCC---------------C--ch------------h
Q 014286          162 AALYVTESPHWLYKKGRT-------------AEAEA---EFEKLLGG---------------S--HV------------K  196 (427)
Q Consensus       162 ~~~~i~~~~~~~~~~~~~-------------~~~~~---~~~~~~~~---------------~--~~------------~  196 (427)
                      -.+++++    +..+++.             .....   .+......               .  ..            .
T Consensus       136 yds~L~~----~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li  211 (438)
T COG2270         136 YDSMLPR----LTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLL  211 (438)
T ss_pred             hhhHhhh----hcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHH
Confidence            7776663    1111000             00000   00000000               0  00            0


Q ss_pred             hHHHHHhhhhcCC----C----------CCcchhHhhhcccchhHHHHHHHHHHhhhccchhHHHHhHHHH-HHhcCCCh
Q 014286          197 SSLAELSKLDRGD----D----------GDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSV-FKSAGLSS  261 (427)
Q Consensus       197 ~~~~~~~~~~~~~----~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~  261 (427)
                      ...+-....++.+    .          +-..+++++.++++...++++.+++.-    +.+.+......+ ..++|.+.
T Consensus       212 ~~iPm~~~v~~~~~~~~~~~~~l~~g~k~L~~t~k~i~~~~~i~~FLiA~~~~~D----Gv~til~~~~~fg~~~~gls~  287 (438)
T COG2270         212 FALPMILNVHDAEKISSPPPTALRNGFKELKSTFKEIRGRKNLVLFLIARFFYID----GVNTILAMGGVFGAADLGLSS  287 (438)
T ss_pred             HHhHHHhcccccccccccchHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHh----hHHHHHHHHHHHHHHHcCccH
Confidence            0001111101110    0          112335566666666666666655544    333333333333 34788877


Q ss_pred             h---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcc
Q 014286          262 G---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGA  338 (427)
Q Consensus       262 ~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (427)
                      .   +......+..++|+++.|++.||+|.|+++..+.++..+..+...+...     +   ....+..++++...+ +.
T Consensus       288 ~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~-----~---~~f~i~gll~g~s~G-~~  358 (438)
T COG2270         288 TELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEG-----E---LDFWILGLLVGTSLG-GA  358 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccc-----c---HHHHHHHHHHHHhcc-hH
Confidence            6   4666677888999999999999999999988888777666555444322     1   112222233333332 44


Q ss_pred             cchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHHHH
Q 014286          339 GPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLG-PQLLYSIFGTFCLMAVAFV  404 (427)
Q Consensus       339 ~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~  404 (427)
                      .+..-++..+.+|+++-++..|+++..+...+.++|.+.+.+.+.+| .+..+....++..++.++.
T Consensus       359 qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L  425 (438)
T COG2270         359 QASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLL  425 (438)
T ss_pred             HHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhE
Confidence            56667799999999999999999999999999999999999999887 4445555555555554443

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.63  E-value=2.4e-13  Score=126.25  Aligned_cols=317  Identities=16%  Similarity=0.119  Sum_probs=182.1

Q ss_pred             HHHHHHHHHHHHHHHHHhHHhhhcccchhHHH-HHhhHHHHHHHHHHHhh-h-hhHHHHHHHHHHhhhccccccceeecc
Q 014286           90 EGLVVSMCLGGAFIGSTLSGWIADGVGRRRAF-QLCALPMIIGASISATT-R-NLIGMLLGRFVVGTGMGLGPTVAALYV  166 (427)
Q Consensus        90 ~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l-~~~~~~~~~~~~~~~~~-~-~~~~l~~~r~l~G~~~g~~~~~~~~~i  166 (427)
                      .++..++..+..++..|+.|.++|+-|+||.+ .+...+..+++.+..+. + +++...+.-++.-++.+...+.-.+++
T Consensus        72 ~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~L  151 (477)
T PF11700_consen   72 WLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAYL  151 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            36788889999999999999999999977665 44555566667766663 3 444445555555566666666666666


Q ss_pred             cCCchhhhh---c----------------------CChHH---HHHHHH----------HHhCCCch-------hh----
Q 014286          167 TESPHWLYK---K----------------------GRTAE---AEAEFE----------KLLGGSHV-------KS----  197 (427)
Q Consensus       167 ~~~~~~~~~---~----------------------~~~~~---~~~~~~----------~~~~~~~~-------~~----  197 (427)
                      +|-.+--..   .                      ++...   +...+.          .+......       +.    
T Consensus       152 P~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~~  231 (477)
T PF11700_consen  152 PDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFLI  231 (477)
T ss_pred             HhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHHH
Confidence            641110000   0                      11000   000000          00000000       00    


Q ss_pred             --------HHH---HHhhhhc-CC-CCCc----c-------hhHhhhcccchhHHHHHHHHHHhhhccchhHHHHhHHHH
Q 014286          198 --------SLA---ELSKLDR-GD-DGDI----V-------KFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSV  253 (427)
Q Consensus       198 --------~~~---~~~~~~~-~~-~~~~----~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (427)
                              ..+   ..++.+. ++ +...    .       .++++.|.|+...++++.+++.-   +..+.......+.
T Consensus       232 ~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~t~k~~~~~~~~~~fLia~~l~~d---g~~ti~~~~~i~a  308 (477)
T PF11700_consen  232 VALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFGFKRLWRTFKEIRKLRQLFLFLIAYFLYSD---GVNTIISFAGIYA  308 (477)
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence                    000   0111111 00 1111    1       12333334444444444443332   2233333333444


Q ss_pred             HHhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCcc--chhhhhhHHHHHHHHHHH--HHhhcCCCCCchhHHHHHH
Q 014286          254 FKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRK--ALLQWSFFSMAVSMAIQV--AASSSYIPGSASLYLSVGG  326 (427)
Q Consensus       254 ~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  326 (427)
                      .+..|++..   ...+...+.+++|+++.|++.||+|.|  +.+..+.+...+..+.-.  +....  ....+.+...+.
T Consensus       309 ~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~--~g~~~~~~f~~~  386 (477)
T PF11700_consen  309 TEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSF--FGLKSPWEFWVL  386 (477)
T ss_pred             HHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcc--cCcccHHHHHHH
Confidence            457888877   566677888999999999999999988  676666555533222211  11111  012222333333


Q ss_pred             HHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHHHHH
Q 014286          327 MLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLG-PQLLYSIFGTFCLMAVAFVK  405 (427)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~  405 (427)
                      ..+.+... .+..+...++.+|+.|+++.+...|++...+...+.+||.+.|.+.+.+| .+..+....++.+++.++. 
T Consensus       387 a~~~G~~~-G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll-  464 (477)
T PF11700_consen  387 AVLIGLFM-GGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILL-  464 (477)
T ss_pred             HHHHHHHh-hhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH-
Confidence            33333333 34467777799999999999999999999999999999999999999998 7778877777777776665 


Q ss_pred             HhccCCCC
Q 014286          406 RNVVETKG  413 (427)
Q Consensus       406 ~~~~~~~~  413 (427)
                      ...+..|+
T Consensus       465 ~~v~~~~g  472 (477)
T PF11700_consen  465 FFVDVEKG  472 (477)
T ss_pred             hhccchhh
Confidence            34444333

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.61  E-value=5.4e-14  Score=127.00  Aligned_cols=302  Identities=18%  Similarity=0.182  Sum_probs=186.5

Q ss_pred             hhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcc----cchhHH-HHHhhHHHHHHHHHHHhhhh------hHHH
Q 014286           76 SISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG----VGRRRA-FQLCALPMIIGASISATTRN------LIGM  144 (427)
Q Consensus        76 ~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr----~Grr~~-l~~~~~~~~~~~~~~~~~~~------~~~l  144 (427)
                      .+.+.+|++....  |.+..+.-+--++.-|+.|.+.||    +||+|. ++.+.+..++.+.++-.+++      ....
T Consensus        38 fYTdv~Gis~~~a--G~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya  115 (467)
T COG2211          38 FYTDVFGLSAALA--GTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYA  115 (467)
T ss_pred             HHhcccCCcHHHH--HHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHH
Confidence            4455667755544  888888888888999999999996    787655 57777889999888887773      4456


Q ss_pred             HHHHHHHhhhccccccceeecccCCchhhhhcCC---hHHHHHHHH------------HHhCCCc---------------
Q 014286          145 LLGRFVVGTGMGLGPTVAALYVTESPHWLYKKGR---TAEAEAEFE------------KLLGGSH---------------  194 (427)
Q Consensus       145 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~------------~~~~~~~---------------  194 (427)
                      ++.-.+.+++.......-.++.+|-.+-..++.+   +........            ...+...               
T Consensus       116 ~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi  195 (467)
T COG2211         116 LVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVI  195 (467)
T ss_pred             HHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHH
Confidence            6777788888777666555555541100000000   000000000            0011110               


Q ss_pred             ----hhhHHHHHhhhh----cCCCCCcchhH----hhhcccchhHHHHHHHHHHhhhccchhHHHHhHHHHHHhcCCChh
Q 014286          195 ----VKSSLAELSKLD----RGDDGDIVKFE----ELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSG  262 (427)
Q Consensus       195 ----~~~~~~~~~~~~----~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  262 (427)
                          ........++..    +.++..+.+++    .+++|+.+....+..++.............+|..+.+++....+.
T Consensus       196 ~~i~~l~~~~~v~ER~~~~~~~~~~~~~~~~~~~~~~~~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~  275 (467)
T COG2211         196 GVILLLFCFFNVKERVVETQPTKTGVKLKLKDSFLLIFKNRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAY  275 (467)
T ss_pred             HHHHHHHHHHHhhcccCccccCcccccccHHHHHHHHHccchHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHH
Confidence                000000111111    11111223333    567788877766655555554444444445555555444333344


Q ss_pred             HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcccchh
Q 014286          263 LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVP  342 (427)
Q Consensus       263 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (427)
                      ........+.+++.++..++.+|+|+|+++..+.++.+++.+++.+...      .+.+..++..++.+.+.+ ...++.
T Consensus       276 ~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~------~~~~l~~~~~~i~~~g~~-~~~~l~  348 (467)
T COG2211         276 LLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPA------GSVVLIVVALIIAGVGTG-IANPLP  348 (467)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcC------cchHHHHHHHHHHHHHhh-cccccc
Confidence            5666666777777899999999999999999999999998888877652      122333333333333333 446788


Q ss_pred             hhhccCcCC-------ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 014286          343 SLLLPEIFP-------SRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGP  386 (427)
Q Consensus       343 ~~~~~~~~p-------~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~  386 (427)
                      +++++|...       .+.-|...|...++.-+|.+++..+.|+..+..||
T Consensus       349 wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~Gy  399 (467)
T COG2211         349 WAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIGY  399 (467)
T ss_pred             HHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            888888754       34458889999999999999999999999988775

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.57  E-value=7.2e-13  Score=116.74  Aligned_cols=355  Identities=14%  Similarity=0.075  Sum_probs=208.6

Q ss_pred             CCchhHHHHHHHHHHhhhhhccccccccchhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHH
Q 014286           44 PSWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQL  123 (427)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~  123 (427)
                      +..+++|.++++.++..+.+++..-.+++.-.....-++ +.+..  -|..-+|++.+....+++-|+.|++|-|..+++
T Consensus        38 rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~--~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~ll  114 (480)
T KOG2563|consen   38 RVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAA--DWLSMIYMVVSVPFGFAAMWILDKFGLRTALLL  114 (480)
T ss_pred             ccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHH--HHHHHHHHHHHHHHhhHHHHhhcccchHHHHHH
Confidence            345677888888888888888888777887777777788 33333  588999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhhh------hhH--HHHHHHHHHhhhccccccceeecccCCchhhhhcCChH-HHHHHH--------
Q 014286          124 CALPMIIGASISATTR------NLI--GMLLGRFVVGTGMGLGPTVAALYVTESPHWLYKKGRTA-EAEAEF--------  186 (427)
Q Consensus       124 ~~~~~~~~~~~~~~~~------~~~--~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~--------  186 (427)
                      +..+..+|+.+-..+.      .++  ....+..+.+.+.-..... +.-++++  |+....+.. .....+        
T Consensus       115 gt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~l-PskiA~~--WF~~~qra~A~~~~v~~n~LGvav  191 (480)
T KOG2563|consen  115 GTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGL-PSKIAAV--WFPPDQRAIATVLGVMGNPLGVAV  191 (480)
T ss_pred             HHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhcc-ccHHHHh--hCCcchhhhhhhHHHhcchHHHHH
Confidence            9999999999877652      334  4455666655544322221 1112211  111111000 000000        


Q ss_pred             HHHhCCCc--------------------------hhhHHHHH--hh----------hhcCCCCCcchhHhhhcccchhHH
Q 014286          187 EKLLGGSH--------------------------VKSSLAEL--SK----------LDRGDDGDIVKFEELLYGRHFRVV  228 (427)
Q Consensus       187 ~~~~~~~~--------------------------~~~~~~~~--~~----------~~~~~~~~~~~~~~~~~~~~~~~~  228 (427)
                      ..+.....                          ........  ++          ....+..-..+.++.++++++...
T Consensus       192 g~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~~~~~~~f~~si~~~~~n~~F~il  271 (480)
T KOG2563|consen  192 GFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQAALQDASFPKSIKSCFKNRQFIIL  271 (480)
T ss_pred             HhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhhhhcCcHHHHHHHHHcCccHHHH
Confidence            00000000                          00000000  00          000111223456677888877766


Q ss_pred             HHHHHHHHhhhccchhHHHHhHHHHHHhcCCC---hhHHHHHHHHHHHHHHHhHhhhhcccCc-cchhhhhhHHHHHHHH
Q 014286          229 FIGSTLFALQQLSGINAIFYFSSSVFKSAGLS---SGLANVFVGIANLLGSVVAMVLMDKLGR-KALLQWSFFSMAVSMA  304 (427)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~g~l~d~~g~-~~~~~~~~~~~~~~~~  304 (427)
                      .+++.....    .++.+...+...+...|++   .+.......+++++++.+.|.+.||.+. |.+.+.......++..
T Consensus       272 ~~~ygi~~g----~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~  347 (480)
T KOG2563|consen  272 AICYGIGLG----LFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTL  347 (480)
T ss_pred             HHHHhhhHH----HHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            666555444    3333333343333344444   4477888888999999999999999875 4444444444444432


Q ss_pred             HHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014286          305 IQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQL  384 (427)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~  384 (427)
                      .+.....    .....+.... .....+.++.+..|+..-+..|..-|..-++..|+.+..+++-+++-.++.+...+..
T Consensus       348 ~l~~~t~----~~~~~viv~~-t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~  422 (480)
T KOG2563|consen  348 MLLTCTL----FLGDSVIVFT-TCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDL  422 (480)
T ss_pred             HHHHhhc----cCCceEehhh-hHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhcc
Confidence            2222211    1111122222 2223333455667777777777644455688899999999999999999999988877


Q ss_pred             c----cchhHHHHHHHHHHHHHHHHHhccCCCC
Q 014286          385 G----PQLLYSIFGTFCLMAVAFVKRNVVETKG  413 (427)
Q Consensus       385 g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (427)
                      +    +...-+.....+.+...+..++.++.++
T Consensus       423 ~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y~R  455 (480)
T KOG2563|consen  423 GPPGNTFPANIFLTVSALLGAILVAFFRPDYRR  455 (480)
T ss_pred             CCCCCCccchhHhHHHHHHHHHHHhhhhhhHHh
Confidence            7    4444455555555555555555544433

>PRK11462 putative transporter; Provisional

Probab=99.57  E-value=3.4e-13  Score=126.43  Aligned_cols=303  Identities=14%  Similarity=0.076  Sum_probs=157.4

Q ss_pred             hhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcc----cchhHHH-HHhhHHHHHHHHHHHhhhh------hH
Q 014286           74 LESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG----VGRRRAF-QLCALPMIIGASISATTRN------LI  142 (427)
Q Consensus        74 ~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr----~Grr~~l-~~~~~~~~~~~~~~~~~~~------~~  142 (427)
                      +..+.+.+|++....  |.+..+.-+--++..|+.|.++||    +||||.. +++.+..+++.+++-..++      +.
T Consensus        33 ~~fyt~~~Gl~~~~~--g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~  110 (460)
T PRK11462         33 MFFYTDIFGIPAGFV--GTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMI  110 (460)
T ss_pred             HHHHHHhhCCCHHHH--HHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHH
Confidence            334556678754444  899988889999999999999996    7987665 5676778877776654442      33


Q ss_pred             HHHHHHHHHhhhccccccceeecccCCchhhhhcCChH---HHHHHH------------HHHhCCCc-------------
Q 014286          143 GMLLGRFVVGTGMGLGPTVAALYVTESPHWLYKKGRTA---EAEAEF------------EKLLGGSH-------------  194 (427)
Q Consensus       143 ~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~~~~---~~~~~~------------~~~~~~~~-------------  194 (427)
                      .+.+.-++..++.......-.++.+|-.+-...+.+..   ......            ....+...             
T Consensus       111 y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~  190 (460)
T PRK11462        111 YAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLS  190 (460)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHH
Confidence            45555555565555444433333332100000000000   000000            00000000             


Q ss_pred             ----hh--hHHHHHhhhhcCCC---CCcchhHhhhcccchhHHHHHHHHHHhhhccchhHHHHhHHHHHHhcCCChhHHH
Q 014286          195 ----VK--SSLAELSKLDRGDD---GDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLAN  265 (427)
Q Consensus       195 ----~~--~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  265 (427)
                          ..  ......++..+.++   ..+..++..++++.++......++.............+|..+..+... ......
T Consensus       191 ii~~i~~~i~~~~~kE~~~~~~~~~~~~~~l~~~~~Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~~~-~~~~~l  269 (460)
T PRK11462        191 VVAFMMLAFCFFTTKERVEAPPTTTSMREDLRDIWQNDQWRIVGLLTIFNILAVCVRGGAMMYYVTWILGTPE-VFVAFL  269 (460)
T ss_pred             HHHHHHHHHHHhcceeccCCCccCCCHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhcCChH-HHHHHH
Confidence                00  00000011111111   112334566777777665544444444333333444444444432111 111345


Q ss_pred             HHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcccchhhhh
Q 014286          266 VFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLL  345 (427)
Q Consensus       266 ~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (427)
                      ....+..+++.+++++++||+++|+.+..+..+..+..+++.+..      ....+...+..++.+.+. ....+..+++
T Consensus       270 ~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~g~~~-~~~~~l~~~m  342 (460)
T PRK11462        270 TTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVP------MQASITMFVFIFVIGVLH-QLVTPIQWVM  342 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhc------hhHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence            566677888999999999999998877655444433333322221      111112222223333332 2234455556


Q ss_pred             ccCcCC-------ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 014286          346 LPEIFP-------SRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGP  386 (427)
Q Consensus       346 ~~~~~p-------~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~  386 (427)
                      ..|..+       .+..|...+.......+|..+++.+.|.+.+..|+
T Consensus       343 ~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~Gy  390 (460)
T PRK11462        343 MSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGY  390 (460)
T ss_pred             HHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            666644       23335556777788999999999999999987775

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.55  E-value=1.6e-12  Score=120.57  Aligned_cols=97  Identities=24%  Similarity=0.276  Sum_probs=69.8

Q ss_pred             ccchhhhh-hhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhccc-chhHHHHHhhHHHHHHHHHHHhhh-hhHHHHH
Q 014286           70 VNEPLESI-SLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV-GRRRAFQLCALPMIIGASISATTR-NLIGMLL  146 (427)
Q Consensus        70 ~~~~~~~i-~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~-~~~~l~~  146 (427)
                      +...+|.+ .+++|++..+.  +.+.+.+.....++.+++|+++||+ ||||+++++.++..++.++++..+ +...+.+
T Consensus        28 ~~~~L~~yL~~~lgls~~~a--~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l  105 (493)
T PRK15462         28 MRALLILYLTNQLKYDDNHA--YELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYL  105 (493)
T ss_pred             HHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHH
Confidence            34455544 56688766555  8999999999999999999999999 999999999999999988777643 2233444


Q ss_pred             HHHHHhhhccccccceeecccC
Q 014286          147 GRFVVGTGMGLGPTVAALYVTE  168 (427)
Q Consensus       147 ~r~l~G~~~g~~~~~~~~~i~~  168 (427)
                      +..+.++|.|...+...+++.|
T Consensus       106 ~l~li~iG~G~~~~~~~alv~e  127 (493)
T PRK15462        106 SLAIIVCGYGLFKSNVSCLLGE  127 (493)
T ss_pred             HHHHHHHhcccccccHHHHHHH
Confidence            4444445556555544555554

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.55  E-value=3.6e-13  Score=119.21  Aligned_cols=167  Identities=16%  Similarity=0.100  Sum_probs=140.0

Q ss_pred             HHHhhhccchhHHHHhHHHHHHhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHh
Q 014286          234 LFALQQLSGINAIFYFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAAS  310 (427)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~  310 (427)
                      +..+..........-.+|.+.++++.+..   +....++.+..++.++...+.||+.||+++.....++.++.++..+.+
T Consensus        20 ~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp   99 (394)
T COG2814          20 LAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAP   99 (394)
T ss_pred             HHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhc
Confidence            33333333455566678899999999987   688889999999999999999999999999999999999999999887


Q ss_pred             hcCCCCCchhHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhH
Q 014286          311 SSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLY  390 (427)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~  390 (427)
                      ++.        ...+.=++.+...+ .+.++..++..++.|+++|+++.++......+...+|.+++.++-|.+||+..|
T Consensus       100 ~f~--------~Ll~aR~~~g~a~G-~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F  170 (394)
T COG2814         100 SFA--------VLLLARALAGLAHG-VFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATF  170 (394)
T ss_pred             cHH--------HHHHHHHHHHHHHH-HHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHH
Confidence            643        44444444554444 345566669999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcc
Q 014286          391 SIFGTFCLMAVAFVKRNVV  409 (427)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~  409 (427)
                      +..+++.++..+..+...|
T Consensus       171 ~~ia~l~ll~~~~~~~~lP  189 (394)
T COG2814         171 LAIAVLALLALLLLWKLLP  189 (394)
T ss_pred             HHHHHHHHHHHHHHHHhCC
Confidence            9999999999988888888

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.54  E-value=7.7e-14  Score=126.25  Aligned_cols=108  Identities=23%  Similarity=0.264  Sum_probs=88.8

Q ss_pred             HHHHHHHhhhhhccccccccchhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccch-hHHHHHhhHHHHH
Q 014286           52 HVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGR-RRAFQLCALPMII  130 (427)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Gr-r~~l~~~~~~~~~  130 (427)
                      .+.+..+..++.....+++.+..-.+.++++.+.++...|++.++..++.+++++.+|..+.|.|. |+.++.|.++..+
T Consensus        35 si~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~  114 (488)
T KOG2325|consen   35 SIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAII  114 (488)
T ss_pred             hHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHH
Confidence            455666677777788888877776777776666666666999999999999999999999999997 8889999999999


Q ss_pred             HHHHH-Hh---hh-hhHHHHHHHHHHhhhccccc
Q 014286          131 GASIS-AT---TR-NLIGMLLGRFVVGTGMGLGP  159 (427)
Q Consensus       131 ~~~~~-~~---~~-~~~~l~~~r~l~G~~~g~~~  159 (427)
                      ++++. ++   .+ .-+.++++|++.|+|.|...
T Consensus       115 g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~a  148 (488)
T KOG2325|consen  115 GNLLYLALAYVPNGVKYLMLVARILTGVGVGNFA  148 (488)
T ss_pred             HHHHHHHHHhcccchHHHHHHHHHHcCcCcccHH
Confidence            99998 43   23 67889999999999977543

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.53  E-value=1.7e-13  Score=119.76  Aligned_cols=176  Identities=11%  Similarity=0.074  Sum_probs=140.3

Q ss_pred             HHHHHHHHHHhhhccchhHHHHhHHHHHHhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHH
Q 014286          227 VVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSM  303 (427)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~  303 (427)
                      ..++..++.....+..-..+..-.|.+.++.+++..   .+.+.+.+..-++-++.|.++||.+.|..+..+.++.++..
T Consensus        29 qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~n  108 (448)
T COG2271          29 QIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVN  108 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHH
Confidence            344444443333333344444556777788878876   57777888889999999999999999999999999999999


Q ss_pred             HHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHH--HHHH
Q 014286          304 AIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLF--LRLL  381 (427)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~--g~l~  381 (427)
                      +++++..+.        +...+...+-+.+.+.++.|... .+..-+|+++||+..++-|+..++|+.+.|.+.  +.+.
T Consensus       109 il~Gfs~s~--------~~~~~l~~lng~fQg~Gwpp~~~-~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~  179 (448)
T COG2271         109 ILFGFSPSL--------FLFAVLWVLNGWFQGMGWPPCAR-TITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFA  179 (448)
T ss_pred             HHHhhhhHH--------HHHHHHHHHHHHHhcCCCcHHHH-HHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHH
Confidence            999887642        34555556666677777777776 888899999999999999999999999999999  8999


Q ss_pred             HHhccchhHHHHHHHHHHHHHHHHHhccCC
Q 014286          382 EQLGPQLLYSIFGTFCLMAVAFVKRNVVET  411 (427)
Q Consensus       382 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (427)
                      ++.+|+..|++-++++++.+++.++..+++
T Consensus       180 ~~~~w~~~f~~pgiiaiival~~~~~~rd~  209 (448)
T COG2271         180 FHGGWRAAFYFPGIIAIIVALILLFLLRDR  209 (448)
T ss_pred             hccchhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            888999999999999998888887776654

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.53  E-value=4.3e-13  Score=125.34  Aligned_cols=157  Identities=15%  Similarity=0.112  Sum_probs=119.5

Q ss_pred             HHHHhHHHHHHhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhH
Q 014286          245 AIFYFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLY  321 (427)
Q Consensus       245 ~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (427)
                      ....+.|.+.++.|.+..   .......++..++.++.|++.||+|||+.+..+.++.+++.++.....+.        +
T Consensus        41 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~--------~  112 (434)
T PRK11663         41 SFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSSL--------W  112 (434)
T ss_pred             hHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHH--------H
Confidence            445667788888898876   55667778888999999999999999999999998888887776654432        2


Q ss_pred             HHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Q 014286          322 LSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAV  401 (427)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~  401 (427)
                      ...+...+.+.+.+.. .+....++.|.+|+++|++++|+.+....+|..++|.+.+.+.+..||+..|.+.+++.++..
T Consensus       113 ~l~~~~~l~g~~~g~~-~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~  191 (434)
T PRK11663        113 AFALLWVLNAFFQGWG-WPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVG  191 (434)
T ss_pred             HHHHHHHHHHHHHHcc-chHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence            2333333334444433 345555889999999999999999999999999999999999999999999988887766555


Q ss_pred             HHHHHhccC
Q 014286          402 AFVKRNVVE  410 (427)
Q Consensus       402 ~~~~~~~~~  410 (427)
                      ++..+..+|
T Consensus       192 ~~~~~~~~~  200 (434)
T PRK11663        192 LFLCWRLRD  200 (434)
T ss_pred             HHHHHHcCC
Confidence            444444444

>PRK10054 putative transporter; Provisional

Probab=99.52  E-value=9.9e-13  Score=121.23  Aligned_cols=156  Identities=12%  Similarity=0.055  Sum_probs=112.9

Q ss_pred             HHHhHHHHHHhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHH
Q 014286          246 IFYFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYL  322 (427)
Q Consensus       246 ~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (427)
                      .++..+++.++.|.+..   +......+..+++.+..|+++||+|||+.+..+.++..++.+++.+..+.        +.
T Consensus        27 ~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~--------~~   98 (395)
T PRK10054         27 LPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNV--------TL   98 (395)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHH--------HH
Confidence            33444555567888876   45555667788889999999999999999988888887777766654431        22


Q ss_pred             HHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Q 014286          323 SVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVA  402 (427)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~  402 (427)
                      .+....+.+...+ ...+....+..|..|+++|+++.|+.+...++|..++|.+.+.+.+ .||+..|.+.+++.++..+
T Consensus        99 ~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i  176 (395)
T PRK10054         99 VVLFFALINCAYS-VFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLV  176 (395)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHH
Confidence            2222223333322 3345566688899999999999999999999999999999998875 7899999888877776655


Q ss_pred             HHHHhccCC
Q 014286          403 FVKRNVVET  411 (427)
Q Consensus       403 ~~~~~~~~~  411 (427)
                      +..+..++.
T Consensus       177 ~~~~~~~~~  185 (395)
T PRK10054        177 FIQIWVQRS  185 (395)
T ss_pred             HHHHHHhcc
Confidence            554444443

>PRK03545 putative arabinose transporter; Provisional

Probab=99.50  E-value=1.3e-12  Score=120.68  Aligned_cols=155  Identities=15%  Similarity=0.063  Sum_probs=117.9

Q ss_pred             HhHHHHHHhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHH
Q 014286          248 YFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSV  324 (427)
Q Consensus       248 ~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (427)
                      ...|.+.+++|.+..   +......++..++.+..|++.||+|||+.+..+..+.+++.+...+..+.        +..+
T Consensus        30 ~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~--------~~l~  101 (390)
T PRK03545         30 GLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNF--------TVLL  101 (390)
T ss_pred             cchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccH--------HHHH
Confidence            346778888898877   44455666777888889999999999999999988888887777664332        2333


Q ss_pred             HHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHH
Q 014286          325 GGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFV  404 (427)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~  404 (427)
                      +...+.+.+.+ ...+...+++.|.+|+++|+++.|+......+|..++|++.+.+.+..||+..|.+.+++.++..+..
T Consensus       102 ~~r~~~G~~~~-~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~  180 (390)
T PRK03545        102 ISRIGIAFAHA-IFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLL  180 (390)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Confidence            33333333332 23355556889999999999999999999999999999999999999999999999888877776665


Q ss_pred             HHhccCC
Q 014286          405 KRNVVET  411 (427)
Q Consensus       405 ~~~~~~~  411 (427)
                      ....|+.
T Consensus       181 ~~~~~~~  187 (390)
T PRK03545        181 IKLLPLL  187 (390)
T ss_pred             HHhCCCC
Confidence            5555543

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.50  E-value=1.2e-12  Score=121.49  Aligned_cols=170  Identities=16%  Similarity=0.072  Sum_probs=126.6

Q ss_pred             HHHhhhccchhHHHHhHHHHHHhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHh
Q 014286          234 LFALQQLSGINAIFYFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAAS  310 (427)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~  310 (427)
                      +.......-.....+..+.+.++++.+..   +......++..++.+..|++.||+|||+.+..+.++..++..+..+..
T Consensus        15 ~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~   94 (412)
T TIGR02332        15 ILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFAT   94 (412)
T ss_pred             HHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhc
Confidence            33333333444555566777788888876   566677788889999999999999999999999888888887776643


Q ss_pred             hcCCCCCchhHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHH------Hh
Q 014286          311 SSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLE------QL  384 (427)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~------~~  384 (427)
                      +.        +...+.-++.+.+.+. ..+....++.|.+|+++|+++.|+.+....+|..+++.+.+.+.+      ..
T Consensus        95 ~~--------~~l~~~r~l~G~~~~~-~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~  165 (412)
T TIGR02332        95 GP--------ESLYLLRILVGIAEAG-FLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALK  165 (412)
T ss_pred             CH--------HHHHHHHHHHHHHHhh-HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcc
Confidence            32        2333444444444443 345555588999999999999999999999999999999998875      35


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHhccCCC
Q 014286          385 GPQLLYSIFGTFCLMAVAFVKRNVVETK  412 (427)
Q Consensus       385 g~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (427)
                      ||+..|.+.++..++..++.+++.+|++
T Consensus       166 gwr~~f~~~~~~~l~~~~~~~~~~~~~p  193 (412)
T TIGR02332       166 GWQWLFLLEGFPSVILGVMTWFWLDDSP  193 (412)
T ss_pred             chhHHHHHHHHHHHHHHHHHhhccCCCc
Confidence            8999999988877776666666666654

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.50  E-value=7.6e-13  Score=122.04  Aligned_cols=161  Identities=13%  Similarity=0.111  Sum_probs=120.9

Q ss_pred             hHHHHhHHHHHHhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchh
Q 014286          244 NAIFYFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASL  320 (427)
Q Consensus       244 ~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (427)
                      .......|.+.++.|.+..   +......++..++.++.|++.||+|||+.+..+..+..++.+......+        .
T Consensus        22 ~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~--------~   93 (385)
T TIGR00710        22 DMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNN--------I   93 (385)
T ss_pred             HHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHcc--------H
Confidence            3333446677788888776   5666677888899999999999999999999988888887777665432        1


Q ss_pred             HHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Q 014286          321 YLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMA  400 (427)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~  400 (427)
                      +...+..++.+.+.+. ..+....++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..||+..+.+.+++.++.
T Consensus        94 ~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~  172 (385)
T TIGR00710        94 ETLLVLRFVQAFGASA-GSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILL  172 (385)
T ss_pred             HHHHHHHHHHHcchhH-HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence            2333333333333332 234555588999999999999999999999999999999999999999999998888877777


Q ss_pred             HHHHHHhccCCCC
Q 014286          401 VAFVKRNVVETKG  413 (427)
Q Consensus       401 ~~~~~~~~~~~~~  413 (427)
                      .+......+|+++
T Consensus       173 ~~~~~~~~~~~~~  185 (385)
T TIGR00710       173 SALIFFILPETLP  185 (385)
T ss_pred             HHHHHHhCCCCCC
Confidence            6666555665543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.49  E-value=1.8e-12  Score=119.46  Aligned_cols=154  Identities=14%  Similarity=0.152  Sum_probs=118.3

Q ss_pred             hHHHHHHhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHH
Q 014286          249 FSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVG  325 (427)
Q Consensus       249 ~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (427)
                      ..|.+.++.|.++.   .......++..++.++.|++.||+|||+.+..+.++.+++.++.....+        .+..++
T Consensus        42 ~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~--------~~~l~~  113 (394)
T PRK10213         42 LLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANS--------FSLLLI  113 (394)
T ss_pred             hHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHCh--------HHHHHH
Confidence            45667788888876   4455667788889999999999999999999999998887777655432        233444


Q ss_pred             HHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Q 014286          326 GMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVK  405 (427)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  405 (427)
                      .-.+.+.+.+. ..+....++.|.+|+++|+.+.++.....+++..++|.+.+.+.+..||+..|.+.+++.++..+...
T Consensus       114 ~r~l~G~~~g~-~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~  192 (394)
T PRK10213        114 GRACLGLALGG-FWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWII  192 (394)
T ss_pred             HHHHHHHhhHH-HHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHH
Confidence            44444444443 34556668899999999999999999999999999999999999999999999888776666554444


Q ss_pred             HhccCC
Q 014286          406 RNVVET  411 (427)
Q Consensus       406 ~~~~~~  411 (427)
                      ...||.
T Consensus       193 ~~~p~~  198 (394)
T PRK10213        193 KSLPSL  198 (394)
T ss_pred             HHCCCC
Confidence            445553

>TIGR00895 2A0115 benzoate transport

Probab=99.48  E-value=6.8e-13  Score=122.90  Aligned_cols=160  Identities=21%  Similarity=0.217  Sum_probs=120.7

Q ss_pred             hhHHHHhHHHHHHhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCch
Q 014286          243 INAIFYFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSAS  319 (427)
Q Consensus       243 ~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (427)
                      .....++.|.+.++.|.+..   .......++..++.++.|+++||+|||+.+..+..+..++.++.....+        
T Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~--------  104 (398)
T TIGR00895        33 LAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALATN--------  104 (398)
T ss_pred             HHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccc--------
Confidence            44555677888888888766   4556667788899999999999999999999988887777766654322        


Q ss_pred             hHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Q 014286          320 LYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLM  399 (427)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~  399 (427)
                      .+...+...+.+.+.+ ...+...+++.|.+|+++|+++.++.+....+|..+++.+.+.+.+..||+..+.+.+++..+
T Consensus       105 ~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~  183 (398)
T TIGR00895       105 VTQLLILRFLAGLGLG-GLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLL  183 (398)
T ss_pred             hHHHHHHHHHHhcccc-cchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHH
Confidence            1233333344443333 234555668999999999999999999999999999999999999999999999888766666


Q ss_pred             HHHHHHHhccCC
Q 014286          400 AVAFVKRNVVET  411 (427)
Q Consensus       400 ~~~~~~~~~~~~  411 (427)
                      ..++.....+++
T Consensus       184 ~~~~~~~~~~~~  195 (398)
T TIGR00895       184 LLLLLMRFLPES  195 (398)
T ss_pred             HHHHHHHhCCCC
Confidence            665555556654

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.47  E-value=1.4e-12  Score=123.96  Aligned_cols=172  Identities=14%  Similarity=0.031  Sum_probs=126.2

Q ss_pred             HHHHHHhhhccchhHHHHhHHHHHHhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHH
Q 014286          231 GSTLFALQQLSGINAIFYFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQV  307 (427)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~  307 (427)
                      ...+..+....-.+....-.|.+.++.+.+..   +....+.++...+.+..|+++||+|||+.+..+..+..++.+++.
T Consensus        10 ~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~   89 (495)
T PRK14995         10 IIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAA   89 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence            33333333333455556667888888887664   566677788888889999999999999999999999988888877


Q ss_pred             HHhhcCCCCCchhHHHHHHHHHHHHHHhhcccchhhhhccC-cCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 014286          308 AASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPE-IFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGP  386 (427)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~  386 (427)
                      ...+        .+..++.-.+.+.+.+. ..+.....+.+ ..|+++|+++.|+......+|..++|.+.|.+.++.||
T Consensus        90 ~a~~--------~~~li~~r~l~G~g~~~-~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gw  160 (495)
T PRK14995         90 FSPT--------ASWLIATRALLAIGAAM-IVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYW  160 (495)
T ss_pred             HcCC--------HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCh
Confidence            6533        23344444445544443 23333334444 44778999999999999999999999999999999999


Q ss_pred             chhHHHHHHHHHHHHHHHHHhccCC
Q 014286          387 QLLYSIFGTFCLMAVAFVKRNVVET  411 (427)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~~  411 (427)
                      ++.|++...+.++..++..+..|+.
T Consensus       161 r~~f~i~~~~~~~~~~l~~~~l~~~  185 (495)
T PRK14995        161 GSVFLINVPIVLVVMGLTARYVPRQ  185 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            9999988877777766666666654

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.46  E-value=1.1e-12  Score=121.26  Aligned_cols=158  Identities=16%  Similarity=0.123  Sum_probs=122.8

Q ss_pred             HHHHhHHHHHHhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhH
Q 014286          245 AIFYFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLY  321 (427)
Q Consensus       245 ~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (427)
                      ......|.+.++.|.+..   .......++..++.++.|+++||+|||+.+..+.++.+++..++.+..+        .+
T Consensus        12 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~--------~~   83 (399)
T TIGR00893        12 NLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGA--------YV   83 (399)
T ss_pred             hhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcC--------HH
Confidence            344556677778888766   5677778888999999999999999999999988888887777665442        23


Q ss_pred             HHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Q 014286          322 LSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAV  401 (427)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~  401 (427)
                      ...+...+.+.+.+. ..+....++.|.+|+++|+++.++.+....+|..+++.+.+.+.+..+|+..|.+.+++.++..
T Consensus        84 ~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  162 (399)
T TIGR00893        84 SLYILRVLLGAAEAP-FFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWG  162 (399)
T ss_pred             HHHHHHHHHHHHHHh-hhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence            444444555555443 3455566999999999999999999999999999999999999999999999988888777766


Q ss_pred             HHHHHhccCC
Q 014286          402 AFVKRNVVET  411 (427)
Q Consensus       402 ~~~~~~~~~~  411 (427)
                      ++.....+++
T Consensus       163 ~~~~~~~~~~  172 (399)
T TIGR00893       163 VLWLKFIPDP  172 (399)
T ss_pred             HHhhheecCC
Confidence            6655555544

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.45  E-value=4.3e-12  Score=117.89  Aligned_cols=160  Identities=15%  Similarity=0.101  Sum_probs=116.4

Q ss_pred             chhHHHHhHHHHHHhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCc
Q 014286          242 GINAIFYFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSA  318 (427)
Q Consensus       242 ~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (427)
                      .........+.+.++.|.+..   .......++..++.++.|+++||+|||+.+..+.++.+++.++..+..+       
T Consensus        27 ~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~-------   99 (405)
T TIGR00891        27 DFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPG-------   99 (405)
T ss_pred             HHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcc-------
Confidence            455555666777788888766   5666677888899999999999999999999988888877776665432       


Q ss_pred             hhHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cchhHHHHHHH
Q 014286          319 SLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLG--PQLLYSIFGTF  396 (427)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g--~~~~~~~~~~~  396 (427)
                       .+..+...++.+.+.+. ..+...+++.|.+|+++|+++.++.+....+|..+++.+.+.+.+..+  |+..|.+.++.
T Consensus       100 -~~~l~~~~~l~G~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~  177 (405)
T TIGR00891       100 -YITMFIARLVIGIGMGG-EYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILP  177 (405)
T ss_pred             -HHHHHHHHHHHHhhhhh-hhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHH
Confidence             12333444444444433 334555588999999999999999999999999999999999988776  88888765544


Q ss_pred             HHHHHHHHHHhccCC
Q 014286          397 CLMAVAFVKRNVVET  411 (427)
Q Consensus       397 ~~~~~~~~~~~~~~~  411 (427)
                      .++. ++.....||+
T Consensus       178 ~~~~-~~~~~~~~~~  191 (405)
T TIGR00891       178 IIFA-LWLRKNIPEA  191 (405)
T ss_pred             HHHH-HHHHHhCCCC
Confidence            4433 3333445554

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.45  E-value=1.9e-12  Score=120.24  Aligned_cols=160  Identities=16%  Similarity=0.079  Sum_probs=118.7

Q ss_pred             hhHHHHhHHHHHHhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCch
Q 014286          243 INAIFYFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSAS  319 (427)
Q Consensus       243 ~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (427)
                      ........|.+.++.+.+..   .......++..++.++.|+++||+|||+.+..+..+..++.++.....+        
T Consensus        31 ~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~--------  102 (406)
T PRK11551         31 LQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWD--------  102 (406)
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhcc--------
Confidence            34445556777888888876   5666777888899999999999999999999988877777665554322        


Q ss_pred             hHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Q 014286          320 LYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLM  399 (427)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~  399 (427)
                      .+...+...+.+.+.+. ..+....++.|.+|+++|+++.++.+....+|..+++.+.+.+.+..+|+..|++.+++.++
T Consensus       103 ~~~~~~~~~l~G~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (406)
T PRK11551        103 FPSLLVARLLTGVGLGG-ALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLL  181 (406)
T ss_pred             HHHHHHHHHHHHhhHHH-HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHH
Confidence            23333444444444333 23455568999999999999999999999999999999988888888999888887776666


Q ss_pred             HHHHHHHhccCC
Q 014286          400 AVAFVKRNVVET  411 (427)
Q Consensus       400 ~~~~~~~~~~~~  411 (427)
                      ..++...+.+|+
T Consensus       182 ~~~~~~~~l~~~  193 (406)
T PRK11551        182 LVPLLMRWLPES  193 (406)
T ss_pred             HHHHHHHhCCCC
Confidence            555555555554

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.45  E-value=2.4e-12  Score=118.99  Aligned_cols=162  Identities=15%  Similarity=0.113  Sum_probs=120.2

Q ss_pred             chhHHHHhHHHHHHhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCc
Q 014286          242 GINAIFYFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSA  318 (427)
Q Consensus       242 ~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (427)
                      .........|.+.++.|.+..   .......++..++.++.|+++||+|||+.+..+..+..++...+....+       
T Consensus        18 ~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~-------   90 (392)
T PRK10473         18 GIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAET-------   90 (392)
T ss_pred             HHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCc-------
Confidence            344444567788888888876   4556666778888999999999999999999988888877776654332       


Q ss_pred             hhHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Q 014286          319 SLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCL  398 (427)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~  398 (427)
                       .+.......+.+.+.+. ..+....++.|.+|+++|+++.++.+....++..++|.+.+.+.+..||+..+.+.+++.+
T Consensus        91 -~~~~~~~~~l~g~~~~~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~  168 (392)
T PRK10473         91 -SSLFLAGRFLQGIGAGC-CYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGI  168 (392)
T ss_pred             -HHHHHHHHHHHHhhhhH-HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHH
Confidence             12223333333333322 2344555888999999999999999999999999999999988888899999988888777


Q ss_pred             HHHHHHHHhccCCC
Q 014286          399 MAVAFVKRNVVETK  412 (427)
Q Consensus       399 ~~~~~~~~~~~~~~  412 (427)
                      +..++.....+|++
T Consensus       169 i~~~~~~~~~~~~~  182 (392)
T PRK10473        169 LVLLLSLFILKETR  182 (392)
T ss_pred             HHHHHHHHHcCCCC
Confidence            77666656666554

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.44  E-value=3.7e-12  Score=118.12  Aligned_cols=154  Identities=16%  Similarity=0.112  Sum_probs=116.5

Q ss_pred             HHHHHHhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHH
Q 014286          250 SSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGG  326 (427)
Q Consensus       250 ~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (427)
                      +|.+.++++.+..   .....+.++..++.++.|+++||+|||+++..+..+..++.+......+        .+..++.
T Consensus        39 l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~--------~~~l~~~  110 (413)
T PRK15403         39 IINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTS--------MTQFLIA  110 (413)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCC--------HHHHHHH
Confidence            4456677788766   4566667888899999999999999999999998888877776665432        1233444


Q ss_pred             HHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHH
Q 014286          327 MLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKR  406 (427)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  406 (427)
                      -++.+.+.+. ..+....+..|.+|+++++++.++.+....++..++|.+.+.+.+..||+..|++.+++.++..+...+
T Consensus       111 r~l~Gi~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~  189 (413)
T PRK15403        111 RFIQGTSICF-IATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLL  189 (413)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444332 234445578899999999999999999999999999999999999889999999988887777665555


Q ss_pred             hccCCC
Q 014286          407 NVVETK  412 (427)
Q Consensus       407 ~~~~~~  412 (427)
                      ..||++
T Consensus       190 ~lp~~~  195 (413)
T PRK15403        190 AMPETV  195 (413)
T ss_pred             hCCCCc
Confidence            567653

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.44  E-value=5.6e-12  Score=118.53  Aligned_cols=160  Identities=13%  Similarity=0.057  Sum_probs=109.4

Q ss_pred             HHHhHHHHHHhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHH
Q 014286          246 IFYFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYL  322 (427)
Q Consensus       246 ~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (427)
                      .....|++.++ |.+..   .......++..++.++.|+++||+|||+.+..+.++.+++.+.+.+....    ..+.+.
T Consensus        48 ~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~----~~~~~~  122 (452)
T PRK11273         48 FALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWA----TSSIAV  122 (452)
T ss_pred             HHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcc----cccHHH
Confidence            34556776666 87766   56666778888999999999999999999999988888877766654311    111223


Q ss_pred             HHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHH-HHHHHHHHHHHhccchhHHHHHHHHHHHH
Q 014286          323 SVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFF-VGLLFLRLLEQLGPQLLYSIFGTFCLMAV  401 (427)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~-~~~~~g~l~~~~g~~~~~~~~~~~~~~~~  401 (427)
                      ..+...+.+.+.+.. .+.....+.|.+|+++|+++.|+.+....+|+.+ +|.+...+....||+..|++.+++.++..
T Consensus       123 ~~~~~~l~gi~~g~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~  201 (452)
T PRK11273        123 MFVLLFLCGWFQGMG-WPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVA  201 (452)
T ss_pred             HHHHHHHHHHHHhcc-chHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            333344444444433 3333347788899999999999999998888754 44433333344589999988887777766


Q ss_pred             HHHHHhccCC
Q 014286          402 AFVKRNVVET  411 (427)
Q Consensus       402 ~~~~~~~~~~  411 (427)
                      ++..++.+|+
T Consensus       202 ~l~~~~~~~~  211 (452)
T PRK11273        202 LFAFAMMRDT  211 (452)
T ss_pred             HHHHHHccCC
Confidence            6665555553

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.44  E-value=3.6e-12  Score=119.38  Aligned_cols=159  Identities=13%  Similarity=0.064  Sum_probs=111.4

Q ss_pred             HHhHHHHHHhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHH
Q 014286          247 FYFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLS  323 (427)
Q Consensus       247 ~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (427)
                      ....|++.+ .|.+..   +......++..++.++.|+++||+|||+.+..+.++.+++.+.+......    ..+.+..
T Consensus        47 ~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l  121 (438)
T TIGR00712        47 ALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWA----TSSIAIM  121 (438)
T ss_pred             HhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccc----cchHHHH
Confidence            344555554 477766   56667778888999999999999999999888888777776665443211    1112222


Q ss_pred             HHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHH-HhccchhHHHHHHHHHHHHH
Q 014286          324 VGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLE-QLGPQLLYSIFGTFCLMAVA  402 (427)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~-~~g~~~~~~~~~~~~~~~~~  402 (427)
                      .+...+.+.+.+... +.....+.|.+|+++|+++.|+.+....+++.+++.+.+...+ ..||+..|++.+++.++..+
T Consensus       122 ~~~~~l~g~~~g~~~-~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~  200 (438)
T TIGR00712       122 FVLLFLNGWFQGMGW-PPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVAL  200 (438)
T ss_pred             HHHHHHHHHHhhcch-HHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            333333444444333 3344477899999999999999999999999999988876554 46899999988888777666


Q ss_pred             HHHHhccCC
Q 014286          403 FVKRNVVET  411 (427)
Q Consensus       403 ~~~~~~~~~  411 (427)
                      +.+++.+|+
T Consensus       201 ~~~~~~~~~  209 (438)
T TIGR00712       201 FAFAMMRDT  209 (438)
T ss_pred             HHHHhccCC
Confidence            655555543

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.43  E-value=6.7e-12  Score=116.94  Aligned_cols=187  Identities=17%  Similarity=0.041  Sum_probs=125.4

Q ss_pred             hhHhhhcccchhHHHHHHHHHHhhhccchhHHHHhHHHHHHhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccch
Q 014286          215 KFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKAL  291 (427)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~  291 (427)
                      +++.+.+++.++..++..++..+.    ........|.+.++.+.+..   .......++.+++.++.|+++||+|||+.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~   84 (417)
T PRK10489          9 DLSLLKTHPAFRAVFIARFISIFG----LGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKL   84 (417)
T ss_pred             HHHHHHhCCChhhHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceE
Confidence            344455677777666665554442    33444455655555555554   56677778888999999999999999999


Q ss_pred             hhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHH
Q 014286          292 LQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINF  371 (427)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~  371 (427)
                      +..+..+.+++...+......   .....+...+..++.+.+.+.. .+....++.|.+|+++|+++.++.+...++|..
T Consensus        85 l~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  160 (417)
T PRK10489         85 ILLARGTCGLGFIGLALNAFL---PEPSLLAIYLLGLWDGFFGSLG-VTALLAATPALVGRENLMQAGAITMLTVRLGSV  160 (417)
T ss_pred             EEehHHHHHHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHHHHHH-HHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHH
Confidence            988877777666554432111   1112223333333334333333 233444788999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhccC
Q 014286          372 FVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVE  410 (427)
Q Consensus       372 ~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  410 (427)
                      ++|.+.+.+.+..||++.+.+.++..++..++. ...++
T Consensus       161 ~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~  198 (417)
T PRK10489        161 ISPALGGLLIAAGGVAWNYGLAAAGTFITLLPL-LRLPA  198 (417)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhCCC
Confidence            999999999998899988887776666554443 34444

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.43  E-value=1.6e-11  Score=115.95  Aligned_cols=178  Identities=11%  Similarity=0.031  Sum_probs=117.6

Q ss_pred             hcccchhHHHHHHHHHHhhhccchhHHHHhHHHHHHhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhh
Q 014286          220 LYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSF  296 (427)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~  296 (427)
                      +++++.+.............. .......+.+.+.+++|.+..   .......++..++.++.|+++||+|||+.+..+.
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~  108 (476)
T PLN00028         30 FARPHMRAFHLSWISFFTCFV-STFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLL  108 (476)
T ss_pred             CCchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHH
Confidence            334444444444443333333 233344556778888898776   3455566777889999999999999999998888


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHH
Q 014286          297 FSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLL  376 (427)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~  376 (427)
                      ++.+++.++..+..+.        +..++..++.+.+.+. ..+. ..++.|.+|+++||.+.|+.+...++|..+++.+
T Consensus       109 ~~~~~~~~~~~~~~s~--------~~l~~~r~l~G~~~~~-~~~~-~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~  178 (476)
T PLN00028        109 MLTAPAVFCMSLVSSA--------TGFIAVRFFIGFSLAT-FVSC-QYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLL  178 (476)
T ss_pred             HHHHHHHHHHHHhcCH--------HHHHHHHHHHHHHHHh-hHHH-HHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHH
Confidence            7777776666554321        2223333333333332 2233 3367899999999999999998888888888777


Q ss_pred             HHHHHH---------HhccchhHHHHHHHHHHHHHHHHHhc
Q 014286          377 FLRLLE---------QLGPQLLYSIFGTFCLMAVAFVKRNV  408 (427)
Q Consensus       377 ~g~l~~---------~~g~~~~~~~~~~~~~~~~~~~~~~~  408 (427)
                      .+.+.+         ..||+..|.+.+++.++..++.+++.
T Consensus       179 ~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~  219 (476)
T PLN00028        179 MPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLG  219 (476)
T ss_pred             HHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHc
Confidence            655432         14899999998888877666555444

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.43  E-value=4.6e-12  Score=116.49  Aligned_cols=159  Identities=15%  Similarity=0.114  Sum_probs=121.5

Q ss_pred             HHHHhHHHHHHhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhH
Q 014286          245 AIFYFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLY  321 (427)
Q Consensus       245 ~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (427)
                      ......|.+.++.|.+..   .......++..++.++.|++.||+|||+.+..+..+.+++.++..+..+        .+
T Consensus        21 ~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~--------~~   92 (382)
T PRK10091         21 GIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSS--------YL   92 (382)
T ss_pred             HHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCc--------HH
Confidence            444456777888888765   5677788899999999999999999999999999998888877766533        23


Q ss_pred             HHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Q 014286          322 LSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAV  401 (427)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~  401 (427)
                      ..++...+.+.+.+.. .+.....+.|.+|+++|+.+.++......++..++|.+.+.+.+..||+..|.+.+++.++..
T Consensus        93 ~l~~~r~l~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~  171 (382)
T PRK10091         93 MLAIGRLVSGFPHGAF-FGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVL  171 (382)
T ss_pred             HHHHHHHHHHhhhHHH-HHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHH
Confidence            3344444444433332 334445778889988999999999999999999999999999998999999999888777666


Q ss_pred             HHHHHhccCCC
Q 014286          402 AFVKRNVVETK  412 (427)
Q Consensus       402 ~~~~~~~~~~~  412 (427)
                      +......||.+
T Consensus       172 ~~~~~~lp~~~  182 (382)
T PRK10091        172 ASIYFWVPDIR  182 (382)
T ss_pred             HHHHHhCCCCC
Confidence            55555666643

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.43  E-value=1.7e-12  Score=123.66  Aligned_cols=162  Identities=16%  Similarity=0.075  Sum_probs=124.7

Q ss_pred             chhHHHHhHHHHHHhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCc
Q 014286          242 GINAIFYFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSA  318 (427)
Q Consensus       242 ~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (427)
                      .........|.+.++.|.+..   +......++..++.++.|+++||+|||+.+..+..+..++.++.....+       
T Consensus        17 ~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~-------   89 (485)
T TIGR00711        17 DSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPN-------   89 (485)
T ss_pred             HHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcCC-------
Confidence            345555667888888888765   6777788899999999999999999999999998888888777664332       


Q ss_pred             hhHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Q 014286          319 SLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCL  398 (427)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~  398 (427)
                       .+..++...+.+.+.+ ...+...+++.|.+|+++|+++.++......+|..++|.+.+.+.++.||++.|++.+.+.+
T Consensus        90 -~~~l~~~~~~~G~~~~-~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~  167 (485)
T TIGR00711        90 -LELMIIFRVIQGFGGG-PLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGI  167 (485)
T ss_pred             -HHHHHHHHHHHHhhhh-hHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHH
Confidence             2233333344443333 33455666899999999999999999999999999999999999999999999998887777


Q ss_pred             HHHHHHHHhccCCC
Q 014286          399 MAVAFVKRNVVETK  412 (427)
Q Consensus       399 ~~~~~~~~~~~~~~  412 (427)
                      +..++..+..++++
T Consensus       168 ~~~~~~~~~~~~~~  181 (485)
T TIGR00711       168 IVVVVAFFILPRDK  181 (485)
T ss_pred             HHHHHHHHHcCCcc
Confidence            66666655555543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK03699 putative transporter; Provisional

Probab=99.43  E-value=7.3e-12  Score=115.69  Aligned_cols=153  Identities=14%  Similarity=0.166  Sum_probs=113.3

Q ss_pred             hhHHHHhHHHHHHhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCch
Q 014286          243 INAIFYFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSAS  319 (427)
Q Consensus       243 ~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (427)
                      ........|.+.++++.+..   .......++..++.++.|++.||+|||+.+..+..+..++..+.....+        
T Consensus        23 ~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~~~--------   94 (394)
T PRK03699         23 VIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFSHS--------   94 (394)
T ss_pred             HHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcch--------
Confidence            44555667788888888876   4556677888899999999999999999998888887777766655322        


Q ss_pred             hHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHH-HhccchhHHHHHHHHH
Q 014286          320 LYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLE-QLGPQLLYSIFGTFCL  398 (427)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~-~~g~~~~~~~~~~~~~  398 (427)
                      .+...+...+.+.+.+... +....++.|.+|+++|+.+.+..+....+++.++|.+.+.+.+ ..||+..|.+.+++.+
T Consensus        95 ~~~~~~~~~l~G~~~g~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~  173 (394)
T PRK03699         95 LALFSIAMFVLGVVSGITM-SIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYV  173 (394)
T ss_pred             HHHHHHHHHHHHHhhHhhc-cchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence            2233344444444444333 3444588899999999999999988888999999999988875 4689999988877766


Q ss_pred             HHHHHH
Q 014286          399 MAVAFV  404 (427)
Q Consensus       399 ~~~~~~  404 (427)
                      +..++.
T Consensus       174 ~~~~~~  179 (394)
T PRK03699        174 AIFILT  179 (394)
T ss_pred             HHHHHH
Confidence            654443

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.42  E-value=8.9e-12  Score=113.96  Aligned_cols=156  Identities=14%  Similarity=0.063  Sum_probs=114.2

Q ss_pred             HHHhHHHHHHhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHH
Q 014286          246 IFYFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYL  322 (427)
Q Consensus       246 ~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (427)
                      .....|.+..+.+.+..   .......++..++.++.|+++||+|||+.+..+..+..++..+.......   ...+.+.
T Consensus        18 ~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~   94 (365)
T TIGR00900        18 TQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALL---GGLNIWQ   94 (365)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHc---CCCcHHH
Confidence            33444555556666655   56666778888999999999999999999999888877777666555421   1112334


Q ss_pred             HHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Q 014286          323 SVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVA  402 (427)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~  402 (427)
                      ..+...+.+.+.+. ..+...+++.|.+|+++|+++.|+.+....+|..++|.+.+.+.+..||+..|.+.++..++..+
T Consensus        95 ~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~  173 (365)
T TIGR00900        95 VYVLAGILAIAQAF-FTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISAL  173 (365)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            44444444444443 34555668999999999999999999999999999999999999999999998887776665544


Q ss_pred             HHH
Q 014286          403 FVK  405 (427)
Q Consensus       403 ~~~  405 (427)
                      ...
T Consensus       174 ~~~  176 (365)
T TIGR00900       174 LIV  176 (365)
T ss_pred             HHH
Confidence            443

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.41  E-value=1.4e-11  Score=114.40  Aligned_cols=156  Identities=13%  Similarity=0.067  Sum_probs=115.5

Q ss_pred             HhHHHHHHhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHH
Q 014286          248 YFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSV  324 (427)
Q Consensus       248 ~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (427)
                      ...+.+.++++.+..   .......++..++.++.|+++||+|||+.+..+.....++.+......+        .+..+
T Consensus        34 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~--------~~~l~  105 (406)
T PRK15402         34 PGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQS--------IEQFT  105 (406)
T ss_pred             cchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHcc--------HHHHH
Confidence            345567778888776   4556677788889999999999999999999888887777766655432        12233


Q ss_pred             HHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHH
Q 014286          325 GGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFV  404 (427)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~  404 (427)
                      ....+.+.+.+. ..+.....+.|.+|+++|+++.++......++..++|.+.+.+.+..||+..+++.+++.++..+..
T Consensus       106 ~~~~l~G~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~  184 (406)
T PRK15402        106 LLRFLQGIGLCF-IGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGL  184 (406)
T ss_pred             HHHHHHHhHhhh-HHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHH
Confidence            333333333322 2345555788999999999999999888889999999999999998999999988888877776655


Q ss_pred             HHhccCCC
Q 014286          405 KRNVVETK  412 (427)
Q Consensus       405 ~~~~~~~~  412 (427)
                      +...||++
T Consensus       185 ~~~~~~~~  192 (406)
T PRK15402        185 WRAMPETA  192 (406)
T ss_pred             HHhCCCCC
Confidence            55566554

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.41  E-value=1.1e-11  Score=120.76  Aligned_cols=158  Identities=12%  Similarity=0.079  Sum_probs=115.0

Q ss_pred             hHHHHhHHHHHHhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchh
Q 014286          244 NAIFYFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASL  320 (427)
Q Consensus       244 ~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (427)
                      ..+....|.+.++.+.+..   ++.....++.+++.+++|+++||+|||+.+.++.++.+++.++..+..+.        
T Consensus       184 ~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa~s~--------  255 (742)
T TIGR01299       184 FVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGY--------  255 (742)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhH--------
Confidence            3455567777778888765   56677788999999999999999999999999888888777766654321        


Q ss_pred             HHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh-------------ccc
Q 014286          321 YLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQL-------------GPQ  387 (427)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~-------------g~~  387 (427)
                      +..+++-++.+++.+.. .+...+++.|.+|++.||...++.+....+|.++++.++..+....             +|+
T Consensus       256 ~~llv~R~l~G~g~g~~-~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR  334 (742)
T TIGR01299       256 GFFLFCRLLSGFGIGGA-IPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWR  334 (742)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHH
Confidence            23444444445444433 4666779999999999999999999999999999998887776544             356


Q ss_pred             hhHHHHHHHHHHHHHHHHHhccCC
Q 014286          388 LLYSIFGTFCLMAVAFVKRNVVET  411 (427)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~~~  411 (427)
                      ..+++.++.+++. ++..++.||.
T Consensus       335 ~l~~i~~lp~ll~-ll~~~~lPES  357 (742)
T TIGR01299       335 VFVIVCAFPCVFA-IGALTFMPES  357 (742)
T ss_pred             HHHHHHHHHHHHH-HHHHHHcCCC
Confidence            6666655544443 4444566665

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.41  E-value=1.7e-11  Score=113.80  Aligned_cols=149  Identities=11%  Similarity=0.041  Sum_probs=104.6

Q ss_pred             HhHHHH-HHhcCCChh---HHHHHHHHHHHHHHHhHhhhhccc-CccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHH
Q 014286          248 YFSSSV-FKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKL-GRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYL  322 (427)
Q Consensus       248 ~~~~~~-~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (427)
                      .+++.+ .+..|++..   .....+.....++.+++|+++||+ |||+.+..+.++..++.+++.....      . ...
T Consensus        30 ~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~------~-~~~  102 (493)
T PRK15462         30 ALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEI------H-PSF  102 (493)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhc------c-hhH
Confidence            344433 455688776   345555667778889999999999 9999999999988888765543211      0 011


Q ss_pred             HHHHHHHHHHHHhhcccchhhhhccCcCCcc--chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Q 014286          323 SVGGMLMFVLTFALGAGPVPSLLLPEIFPSR--IRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMA  400 (427)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~  400 (427)
                      ......+...+.+. ..+...+++.|.+|++  +|.++.++.+...++|+.++|.+.+++.+..||+..|.+.++..+++
T Consensus       103 ~~l~l~li~iG~G~-~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~  181 (493)
T PRK15462        103 LYLSLAIIVCGYGL-FKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAG  181 (493)
T ss_pred             HHHHHHHHHHhccc-ccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHH
Confidence            22222222233322 2344456899999875  69999999999999999999999999999999999998876655554


Q ss_pred             HHHH
Q 014286          401 VAFV  404 (427)
Q Consensus       401 ~~~~  404 (427)
                      .+..
T Consensus       182 li~~  185 (493)
T PRK15462        182 LVIF  185 (493)
T ss_pred             HHHH
Confidence            4443

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.40  E-value=1.6e-11  Score=113.43  Aligned_cols=157  Identities=15%  Similarity=0.084  Sum_probs=114.1

Q ss_pred             hHHHHhHHHHHHhcCCChhH---HHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchh
Q 014286          244 NAIFYFSSSVFKSAGLSSGL---ANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASL  320 (427)
Q Consensus       244 ~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (427)
                      ...++..+++.++.|.+...   ......+...+..++.|+++||+|||+.+..+..+..++.+.+....+        .
T Consensus        28 ~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~--------~   99 (400)
T PRK11646         28 VVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHE--------P   99 (400)
T ss_pred             HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhcc--------H
Confidence            33444445556778888774   444445566667889999999999999999999988888877665322        2


Q ss_pred             HHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Q 014286          321 YLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMA  400 (427)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~  400 (427)
                      +...+...+.+.+.+ ...|...+++.|.+|+++|+++.|+.+...++|..++|.+.+.+. ..||+..|++.+++.++.
T Consensus       100 ~~l~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~  177 (400)
T PRK11646        100 WLLWLSCILSGLGGT-LFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLA  177 (400)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHH
Confidence            333333344444333 234555558889999999999999999999999999999999998 679999998887777666


Q ss_pred             HHHHHHhccC
Q 014286          401 VAFVKRNVVE  410 (427)
Q Consensus       401 ~~~~~~~~~~  410 (427)
                      .++.....++
T Consensus       178 ~i~~~~~~~~  187 (400)
T PRK11646        178 AAFNAWLLPA  187 (400)
T ss_pred             HHHHHHhCCc
Confidence            5554455554

>PRK10504 putative transporter; Provisional

Probab=99.40  E-value=1.1e-11  Score=117.36  Aligned_cols=159  Identities=14%  Similarity=0.004  Sum_probs=118.8

Q ss_pred             hhHHHHhHHHHHHhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCch
Q 014286          243 INAIFYFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSAS  319 (427)
Q Consensus       243 ~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (427)
                      ........|.+.++.|.+..   +......++..++.++.|+++||+|||+.+..+..+..++.+......+        
T Consensus        26 ~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~--------   97 (471)
T PRK10504         26 TTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALSGT--------   97 (471)
T ss_pred             HHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhCC--------
Confidence            34455567888888898876   4556666777889999999999999999998887777776665544321        


Q ss_pred             hHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Q 014286          320 LYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLM  399 (427)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~  399 (427)
                      .+...+...+.+.+.+. ..+....++.|.+|+++|+++.|+.+...++|..++|.+.|.+.+..||++.|.+...+..+
T Consensus        98 ~~~l~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l  176 (471)
T PRK10504         98 LNELLLARVLQGVGGAM-MVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGII  176 (471)
T ss_pred             HHHHHHHHHHHHhhhHH-HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHH
Confidence            22333444444444433 34555668889999999999999999999999999999999999999999999888777766


Q ss_pred             HHHHHHHhccC
Q 014286          400 AVAFVKRNVVE  410 (427)
Q Consensus       400 ~~~~~~~~~~~  410 (427)
                      ..++.....++
T Consensus       177 ~~~~~~~~~~~  187 (471)
T PRK10504        177 GAIATLMLMPN  187 (471)
T ss_pred             HHHHHHHhCCC
Confidence            66665555444

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.40  E-value=2.1e-12  Score=117.53  Aligned_cols=155  Identities=19%  Similarity=0.172  Sum_probs=116.5

Q ss_pred             HHHhHH-HHHHhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhH
Q 014286          246 IFYFSS-SVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLY  321 (427)
Q Consensus       246 ~~~~~~-~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (427)
                      .....+ .+.++.|.+..   +......++..++.++.|+++||+|||+.+..+.++.+++..+..+..+        .+
T Consensus        15 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~--------~~   86 (352)
T PF07690_consen   15 ISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASN--------FW   86 (352)
T ss_dssp             HHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCC--------HH
T ss_pred             HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhh--------HH
Confidence            334455 66677777766   5666777888999999999999999999999999988888444443211        13


Q ss_pred             HHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Q 014286          322 LSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAV  401 (427)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~  401 (427)
                      ..++..++.+.+.+ ...+....++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..||+..|++.+++.++..
T Consensus        87 ~~~~~~~l~g~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~  165 (352)
T PF07690_consen   87 LLLIARFLLGIGSG-FFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAA  165 (352)
T ss_dssp             HHHHHHHHHHHHHH-HHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHH
T ss_pred             HHhhhccccccccc-cccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhh
Confidence            34444444444443 33555666999999999999999999999999999999999999988899999999999888887


Q ss_pred             HHHHHhcc
Q 014286          402 AFVKRNVV  409 (427)
Q Consensus       402 ~~~~~~~~  409 (427)
                      ++...+.+
T Consensus       166 il~~~~~~  173 (352)
T PF07690_consen  166 ILFILFLP  173 (352)
T ss_dssp             HHHHCCC-
T ss_pred             hhHhhhhh
Confidence            65434443

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.40  E-value=2e-11  Score=112.90  Aligned_cols=180  Identities=14%  Similarity=0.110  Sum_probs=123.0

Q ss_pred             cchhHHHHHHHHHHhhhccchhHHHHhHHHHHHhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHH
Q 014286          223 RHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSM  299 (427)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~  299 (427)
                      +.++..++......+..+ .........|.+.++.+.+..   .......++..++.++.|+++||+|||+.+..+..+.
T Consensus         5 ~~~~~l~~~~~~~~~~~~-~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~   83 (394)
T PRK11652          5 RNVNLLFMLVLLVAVGQM-AQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIF   83 (394)
T ss_pred             hhHHHHHHHHHHHHHHHH-HHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHH
Confidence            334444444444333332 233333345677788888876   4566677888899999999999999999999888888


Q ss_pred             HHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 014286          300 AVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLR  379 (427)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~  379 (427)
                      .++.+......+        .+...+...+.+.+.+. ..+....+..|.++.++++.+.+..+....++..++|.+.+.
T Consensus        84 ~~~~~~~~~~~~--------~~~l~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~  154 (394)
T PRK11652         84 ILGTLVALFAHS--------LTVLIAASAIQGLGTGV-GGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGL  154 (394)
T ss_pred             HHHHHHHHHHcc--------HHHHHHHHHHHHhhhhH-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777766554322        12233333333333322 234444577788888899999999999999999999999999


Q ss_pred             HHHHhccchhHHHHHHHHHHHHHHHHHhccCCC
Q 014286          380 LLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETK  412 (427)
Q Consensus       380 l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (427)
                      +.+..||+..|.+.+++.++..++...+.+|++
T Consensus       155 l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~  187 (394)
T PRK11652        155 LTTLFGWRACYLFLLLLGAGVTFSMARWMPETR  187 (394)
T ss_pred             HHhccChHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence            999899999998887776665555555566643

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.40  E-value=1.1e-11  Score=115.94  Aligned_cols=144  Identities=22%  Similarity=0.260  Sum_probs=110.6

Q ss_pred             hhHHHHhHHHHHHhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCch
Q 014286          243 INAIFYFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSAS  319 (427)
Q Consensus       243 ~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (427)
                      .....+..+.+.++.|.+..   .......++..++.++.|+++||+|||+.+..+.++.+++.+...+..+.       
T Consensus        34 ~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~-------  106 (426)
T PRK12307         34 FMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGV-------  106 (426)
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHH-------
Confidence            34445556777788888766   56666778888999999999999999999999999988888776665432       


Q ss_pred             hHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHH
Q 014286          320 LYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGT  395 (427)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~  395 (427)
                       +...+.-.+.+.+.+ ...+....++.|.+|+++|+++.++......+|..+++.+.+.+.+..||+..|++...
T Consensus       107 -~~l~~~r~l~G~g~g-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~  180 (426)
T PRK12307        107 -IMLTLSRFIVGMGMA-GEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLL  180 (426)
T ss_pred             -HHHHHHHHHHHHHHh-hHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHH
Confidence             233444444444433 23445555889999999999999999999999999999999998888899988876443

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.40  E-value=1.3e-11  Score=112.12  Aligned_cols=159  Identities=13%  Similarity=0.026  Sum_probs=113.7

Q ss_pred             hHHHHhHHHHHHhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchh
Q 014286          244 NAIFYFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASL  320 (427)
Q Consensus       244 ~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (427)
                      .......|.+.++++.+..   +....+.++..++.+..|+++||+|||+.+.........+.. .....       .+.
T Consensus         8 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~-~~~~~-------~~~   79 (368)
T TIGR00903         8 VTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAG-RLLDP-------FNY   79 (368)
T ss_pred             HHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHH-HHHHh-------ccH
Confidence            3444567788888888876   456667788889999999999999998876554443333322 11110       012


Q ss_pred             HHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Q 014286          321 YLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMA  400 (427)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~  400 (427)
                      +..++.-++.+.+.+.  .+......+|.+|+++|+++.++.+....+|..+++.+.+.+.++.||+..|.+.+++.++.
T Consensus        80 ~~l~~~R~l~G~g~~~--~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~  157 (368)
T TIGR00903        80 EWLLACQLLAALGQPF--LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAG  157 (368)
T ss_pred             HHHHHHHHHHHhHhHH--HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHH
Confidence            3344444444444442  22333356888999999999999999999999999999999999999999999988888777


Q ss_pred             HHHHHHhccCCC
Q 014286          401 VAFVKRNVVETK  412 (427)
Q Consensus       401 ~~~~~~~~~~~~  412 (427)
                      .++.++..||.+
T Consensus       158 ~~~~~~~lp~~p  169 (368)
T TIGR00903       158 IILVLAALPALP  169 (368)
T ss_pred             HHHHHHHcCCCC
Confidence            777777777643

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.39  E-value=4.8e-13  Score=118.22  Aligned_cols=182  Identities=13%  Similarity=0.045  Sum_probs=141.3

Q ss_pred             HHHHHHHHhhhccchhHHHHhHHHHHHhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHH
Q 014286          229 FIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAI  305 (427)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~  305 (427)
                      .....+....+..--..+....+...+.++.++.   ++.....+...+.++++|++.||++||+++.+|..+-.++.+.
T Consensus        35 l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~  114 (493)
T KOG1330|consen   35 LVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFA  114 (493)
T ss_pred             HHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHH
Confidence            3333343443333444555556666677777766   7888888999999999999999999999999999999988888


Q ss_pred             HHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 014286          306 QVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLG  385 (427)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g  385 (427)
                      ..+...+        |..+++-.+.+.+-+ ...|+..++++|.+|.++|+++.++++....+|..+|-...+.+.+..+
T Consensus       115 ~~fs~~F--------wq~~l~R~~vGiGeA-s~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~  185 (493)
T KOG1330|consen  115 SGFSNHF--------WQVLLCRGFVGIGEA-SYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTF  185 (493)
T ss_pred             HHHHHHH--------HHHHHHHHHhccchh-hhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCcc
Confidence            8876432        455555555555554 4567777799999999999999999999999999999888888877777


Q ss_pred             -cchhHHHHHHHHHHHHHHHHHhccCCCCCCHHHH
Q 014286          386 -PQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQEI  419 (427)
Q Consensus       386 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (427)
                       |++.|.+.+++.++..++..++.+|.+++..++.
T Consensus       186 ~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~~  220 (493)
T KOG1330|consen  186 WWRWAFRGSAVLGVIVGLLVFLFVREPERGARDEV  220 (493)
T ss_pred             ceEEEEEeehHHHHHHHHHHHhhccCccccccccc
Confidence             9999999999999999888888887765443433

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.39  E-value=2.9e-11  Score=112.43  Aligned_cols=157  Identities=16%  Similarity=0.100  Sum_probs=114.1

Q ss_pred             HHHHhHHHHHHhcCCChh--------HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCC
Q 014286          245 AIFYFSSSVFKSAGLSSG--------LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPG  316 (427)
Q Consensus       245 ~~~~~~~~~~~~~g~~~~--------~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (427)
                      ....+.|.+.++.|.+..        .......+...++.++.|+++||+|||+.+..+.....++.+++....+     
T Consensus        32 ~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~-----  106 (408)
T PRK09874         32 LVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQN-----  106 (408)
T ss_pred             HhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHHhh-----
Confidence            334456666677776632        3455666778888999999999999999999888877777766554322     


Q ss_pred             CchhHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHH
Q 014286          317 SASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTF  396 (427)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~  396 (427)
                         .+..++...+.+.+.  +..+....++.+.+|+++|+++.++.+....+|..++|.+.+.+.+..||+..|.+.+++
T Consensus       107 ---~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~  181 (408)
T PRK09874        107 ---IWQFLILRALLGLLG--GFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASV  181 (408)
T ss_pred             ---HHHHHHHHHHHHHhh--hhHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence               123333333333322  234455557788889999999999999999999999999999999999999999888887


Q ss_pred             HHHHHHHHHHhccCC
Q 014286          397 CLMAVAFVKRNVVET  411 (427)
Q Consensus       397 ~~~~~~~~~~~~~~~  411 (427)
                      .++..+......+++
T Consensus       182 ~~~~~~~~~~~~~~~  196 (408)
T PRK09874        182 LFLCFLVTLFCIREN  196 (408)
T ss_pred             HHHHHHHHHHHhccC
Confidence            777666665555543

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.39  E-value=2.1e-12  Score=118.77  Aligned_cols=159  Identities=12%  Similarity=0.050  Sum_probs=118.8

Q ss_pred             hhHHHHhHHHHHHhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCch
Q 014286          243 INAIFYFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSAS  319 (427)
Q Consensus       243 ~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (427)
                      ........|.+.++.|.+..   .......++..++.++.|+++||+|||+.+..+..+..++.++..+..+        
T Consensus        11 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~--------   82 (379)
T TIGR00881        11 RKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTS--------   82 (379)
T ss_pred             HHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhh--------
Confidence            33444556777778888776   5666777888899999999999999999999999888888877766542        


Q ss_pred             hHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHH-HHHHHHHHhccchhHHHHHHHHH
Q 014286          320 LYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGL-LFLRLLEQLGPQLLYSIFGTFCL  398 (427)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~-~~g~l~~~~g~~~~~~~~~~~~~  398 (427)
                      .+..++...+.+.+.+ ...+...+++.|.+|+++|+++.++.+....+|..++|. +.+.+.+..+|+..|.+.+++.+
T Consensus        83 ~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (379)
T TIGR00881        83 LWVMAALWALNGIFQG-MGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAI  161 (379)
T ss_pred             HHHHHHHHHHHHhhcc-ccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence            1233344444444333 334556668999999999999999999999999999994 66666677889999888887777


Q ss_pred             HHHHHHHHhccC
Q 014286          399 MAVAFVKRNVVE  410 (427)
Q Consensus       399 ~~~~~~~~~~~~  410 (427)
                      +..++.....++
T Consensus       162 ~~~~~~~~~~~~  173 (379)
T TIGR00881       162 IVSLICFLLLRD  173 (379)
T ss_pred             HHHHHHheeeCC
Confidence            666655555554

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.38  E-value=2.5e-11  Score=112.43  Aligned_cols=152  Identities=18%  Similarity=0.040  Sum_probs=105.4

Q ss_pred             HhHH-HHHHhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHH
Q 014286          248 YFSS-SVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLS  323 (427)
Q Consensus       248 ~~~~-~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (427)
                      ...+ ++.++.|.+..   .......++..+++++.|+++||+|||+++..+.++.+++.+.+..............+..
T Consensus        36 ~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  115 (399)
T PRK05122         36 AVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLL  115 (399)
T ss_pred             HHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHH
Confidence            3444 45567787766   5666677888899999999999999999999988877776555443321110001112233


Q ss_pred             HHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Q 014286          324 VGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMA  400 (427)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~  400 (427)
                      ++..++.+.+.+.. .+....+..|.+|+++|+++.++......+|..+++.+.+.+.+..||+..+.+.+++.++.
T Consensus       116 ~~~r~l~G~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~  191 (399)
T PRK05122        116 LLGRLLLGIGESLA-GTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLG  191 (399)
T ss_pred             HHHHHHHHhhHHhh-cchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence            33344444444433 34444477888999999999999999889999999999999999999988776655554433

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.36  E-value=1.7e-11  Score=112.68  Aligned_cols=155  Identities=17%  Similarity=0.148  Sum_probs=117.8

Q ss_pred             HhHHHHHHhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHH
Q 014286          248 YFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSV  324 (427)
Q Consensus       248 ~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (427)
                      ...|.+.++.|.+..   .......++..++.++.|+++||+|||+.+..+.++.+++...+....+.        +...
T Consensus        12 p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~--------~~~~   83 (377)
T PRK11102         12 PALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTI--------DQLI   83 (377)
T ss_pred             ccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccH--------HHHH
Confidence            345566677888766   45666778888999999999999999999999988888887777654321        2333


Q ss_pred             HHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHH
Q 014286          325 GGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFV  404 (427)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~  404 (427)
                      ....+.+.+.+. ..+...+++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..||+..|.+.+++.++..++.
T Consensus        84 ~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  162 (377)
T PRK11102         84 YMRFLHGLAAAA-ASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALV  162 (377)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHH
Confidence            333333433332 2344555889999999999999999999999999999999999999999999988888777776666


Q ss_pred             HHhccCC
Q 014286          405 KRNVVET  411 (427)
Q Consensus       405 ~~~~~~~  411 (427)
                      ....+|+
T Consensus       163 ~~~~~~~  169 (377)
T PRK11102        163 FFFIPET  169 (377)
T ss_pred             HHhCCcc
Confidence            5555554

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.36  E-value=1.9e-11  Score=114.86  Aligned_cols=154  Identities=16%  Similarity=0.110  Sum_probs=110.4

Q ss_pred             hHHHHhHHHHHHhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchh
Q 014286          244 NAIFYFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASL  320 (427)
Q Consensus       244 ~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (427)
                      .....+.+.+.++.|.+..   +......+...++.++.|+++||+|||+.+..+.++..++.+++.+..+.        
T Consensus        36 ~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~--------  107 (455)
T TIGR00892        36 KAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNV--------  107 (455)
T ss_pred             cchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhH--------
Confidence            3345567777888888766   44445556667788899999999999999998888888777766554321        


Q ss_pred             HHHHHHH-HHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Q 014286          321 YLSVGGM-LMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLM  399 (427)
Q Consensus       321 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~  399 (427)
                      +...... ++.+.+.+....+ ...++.+.+| ++|+++.|+.+....+|..++|.+.+.+.+..||+..|++.+++.++
T Consensus       108 ~~l~~~~~~l~G~~~~~~~~~-~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~  185 (455)
T TIGR00892       108 IELYLTAGFITGLGLAFNFQP-SLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLH  185 (455)
T ss_pred             HHHHHHHHHHHHhcchhhhhH-HHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence            1222111 2333333332233 3346778776 78999999999999999999999999999999999999999887776


Q ss_pred             HHHHHHHh
Q 014286          400 AVAFVKRN  407 (427)
Q Consensus       400 ~~~~~~~~  407 (427)
                      ..+..++.
T Consensus       186 ~~v~~~~~  193 (455)
T TIGR00892       186 CCVCGALM  193 (455)
T ss_pred             HHHHHHHh
Confidence            65544433

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.36  E-value=1.7e-11  Score=115.41  Aligned_cols=148  Identities=11%  Similarity=0.040  Sum_probs=107.8

Q ss_pred             HHhHHHHH-Hh--cCCChh---HHHHHHHHHHHHHHHhHhhhhcc-cCccchhhhhhHHHHHHHHHHHHHhhcCCCCCch
Q 014286          247 FYFSSSVF-KS--AGLSSG---LANVFVGIANLLGSVVAMVLMDK-LGRKALLQWSFFSMAVSMAIQVAASSSYIPGSAS  319 (427)
Q Consensus       247 ~~~~~~~~-~~--~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (427)
                      ..+++.++ ++  .|.+..   .......+...++.+++|+++|| +|||+++..+.++.+++.+++.+..+        
T Consensus        30 ~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~--------  101 (475)
T TIGR00924        30 QGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIY--------  101 (475)
T ss_pred             HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhccc--------
Confidence            33444444 34  677765   56667778888999999999999 89999999999998888877765322        


Q ss_pred             hHHHHHHHHHHHHHHhhcccchhhhhccCcCCccc---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHH
Q 014286          320 LYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRI---RAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTF  396 (427)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~---~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~  396 (427)
                      .+.......+.+.+.+ ...+...++++|.+|+++   |+++.++.+...++|..++|.+.+.+.++.||+..|.+.++.
T Consensus       102 ~~~~~~~~~l~g~g~g-~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~  180 (475)
T TIGR00924       102 PDLIFYGLGTIAVGSG-LFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVG  180 (475)
T ss_pred             HhHHHHHHHHHHhccc-cccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence            1223333333333332 234555558888887654   888999999999999999999999999999999999887765


Q ss_pred             HHHHHHH
Q 014286          397 CLMAVAF  403 (427)
Q Consensus       397 ~~~~~~~  403 (427)
                      .+++.+.
T Consensus       181 ~~~~~l~  187 (475)
T TIGR00924       181 MVIGLLT  187 (475)
T ss_pred             HHHHHHH
Confidence            5554433

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.36  E-value=2.4e-11  Score=115.97  Aligned_cols=145  Identities=17%  Similarity=0.116  Sum_probs=110.1

Q ss_pred             chhHHHHhHHHHHHhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCc
Q 014286          242 GINAIFYFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSA  318 (427)
Q Consensus       242 ~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (427)
                      .........+.+.+++|.+..   .......++..++.++.|+++||+|||+.+..+.++.+++.+++.+..+.      
T Consensus        35 ~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~------  108 (496)
T PRK03893         35 DFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAPGY------  108 (496)
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhHH------
Confidence            344555566777788888876   45566677888999999999999999999999888888887776654321      


Q ss_pred             hhHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHH
Q 014286          319 SLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGT  395 (427)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~  395 (427)
                        +...+...+.+.+.+ +..+....++.|.+|+++|+.+.++.+....+|..++|.+.+.+.+..||+..|.+.+.
T Consensus       109 --~~l~~~~~l~G~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~  182 (496)
T PRK03893        109 --WTLFIARLVIGMGMA-GEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGIL  182 (496)
T ss_pred             --HHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence              233333334443333 33445555889999999999999999999999999999999999999999988876433

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.35  E-value=8.9e-11  Score=107.49  Aligned_cols=158  Identities=13%  Similarity=0.058  Sum_probs=109.8

Q ss_pred             hhHHHHhHH-HHHHhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHh-hcCCCCC
Q 014286          243 INAIFYFSS-SVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAAS-SSYIPGS  317 (427)
Q Consensus       243 ~~~~~~~~~-~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  317 (427)
                      ......+.| ++.++.|.+..   +......++..++.++.|+++||+|||+.+..+.++..++.+++.... +      
T Consensus        17 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~------   90 (366)
T TIGR00886        17 WFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQS------   90 (366)
T ss_pred             HHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhh------
Confidence            344445566 46678888876   566677788889999999999999999999999998888887776654 2      


Q ss_pred             chhHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH----------hccc
Q 014286          318 ASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQ----------LGPQ  387 (427)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~----------~g~~  387 (427)
                        .+...+..++.+.+.+ . .+....++.|.+|+++|+.+.++.....++|..+++.+.+.+.+.          .+|+
T Consensus        91 --~~~~~~~~~~~g~~~~-~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~  166 (366)
T TIGR00886        91 --YSVLLLLRLFIGIAGG-S-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWG  166 (366)
T ss_pred             --HHHHHHHHHHHHHhch-h-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccccc
Confidence              1233333333343322 2 233455889999999999999999988888888888887776653          3788


Q ss_pred             hhH-HHHHHHHHHHHHHHHHhccC
Q 014286          388 LLY-SIFGTFCLMAVAFVKRNVVE  410 (427)
Q Consensus       388 ~~~-~~~~~~~~~~~~~~~~~~~~  410 (427)
                      +.+ ...+++..+..++.....++
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~  190 (366)
T TIGR00886       167 WAFVIVPAGILLLPALLIFFVGAD  190 (366)
T ss_pred             chhHHHHHHHHHHHHHHHHHhccc
Confidence            888 44344444444444344333

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.35  E-value=7.5e-12  Score=114.99  Aligned_cols=157  Identities=13%  Similarity=0.098  Sum_probs=116.5

Q ss_pred             hhHHHHhHHHHHHhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCch
Q 014286          243 INAIFYFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSAS  319 (427)
Q Consensus       243 ~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (427)
                      ......+.|.+.++.+.+..   .......++..++.+..|+++||+|||+.+..+.++.+++.+...+..+.       
T Consensus        19 ~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~-------   91 (377)
T TIGR00890        19 VYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSL-------   91 (377)
T ss_pred             HhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHH-------
Confidence            33445567888888888876   56677788889999999999999999999999998888888777765542       


Q ss_pred             hHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Q 014286          320 LYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLM  399 (427)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~  399 (427)
                       +...+...+.+.+.+.... .......|.+| ++|+++.++......+|..+++++.+.+.+..||+..|.+.+++.++
T Consensus        92 -~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~  168 (377)
T TIGR00890        92 -AALYLTYGLASAGVGIAYG-IALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLL  168 (377)
T ss_pred             -HHHHHHHHHHhHHHHHHHH-hHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence             2333333344444433222 23335667676 67999999999999999888888888888888999999988888777


Q ss_pred             HHHHHHHhcc
Q 014286          400 AVAFVKRNVV  409 (427)
Q Consensus       400 ~~~~~~~~~~  409 (427)
                      ..+..+++.+
T Consensus       169 ~~~~~~~~~~  178 (377)
T TIGR00890       169 VIVLGAFLIG  178 (377)
T ss_pred             HHHHHHHhee
Confidence            7666555544

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.35  E-value=5.4e-11  Score=112.11  Aligned_cols=160  Identities=12%  Similarity=0.039  Sum_probs=109.6

Q ss_pred             HHHHHhhhccchhHHHHhHHHHHHhcCCChhH---HHHHHHHHHHHHHHhHhhhhcc-cCccchhhhhhHHHHHHHHHHH
Q 014286          232 STLFALQQLSGINAIFYFSSSVFKSAGLSSGL---ANVFVGIANLLGSVVAMVLMDK-LGRKALLQWSFFSMAVSMAIQV  307 (427)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~  307 (427)
                      ........++.+....+...++.++.|.+...   ....+.....+..+++|+++|| +|||+++..+.++..++.+.+.
T Consensus        20 ~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~   99 (489)
T PRK10207         20 FFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTG   99 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHH
Confidence            33333333444444444455556678877763   3334444555666789999999 9999999999999999888777


Q ss_pred             HHhhcCCCCCchhHHHHHHHHHHHHHHhhcccchhhhhccCcCCcc--chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 014286          308 AASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSR--IRAKAMAVCMSVHWVINFFVGLLFLRLLEQLG  385 (427)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g  385 (427)
                      +.....       ....+...+.+.+.+. ..|...+++.|.+|++  +|+.+.++.+...++|..++|.+.|++.++.|
T Consensus       100 ~~~~~~-------~ll~~~~~l~~ig~g~-~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~g  171 (489)
T PRK10207        100 MSLLKP-------DLIFIALGTIAVGNGL-FKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFG  171 (489)
T ss_pred             Hhccch-------hHHHHHHHHHHhcccc-ccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            643211       1122333333333332 3455566999999877  45789999999999999999999999999999


Q ss_pred             cchhHHHHHHHHHH
Q 014286          386 PQLLYSIFGTFCLM  399 (427)
Q Consensus       386 ~~~~~~~~~~~~~~  399 (427)
                      |++.|++.++..++
T Consensus       172 w~~~F~i~~i~~~~  185 (489)
T PRK10207        172 YSVTYNLCGAGLII  185 (489)
T ss_pred             hHHHHHHHHHHHHH
Confidence            99999886554333

>PRK12382 putative transporter; Provisional

Probab=99.35  E-value=5e-11  Score=110.15  Aligned_cols=144  Identities=15%  Similarity=-0.016  Sum_probs=98.5

Q ss_pred             HHHHhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHH
Q 014286          252 SVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGML  328 (427)
Q Consensus       252 ~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (427)
                      ++.++.|.+..   .......+...+++++.|+++||+|||+.+..+.+...++.+..............+.+..++.-.
T Consensus        41 ~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~  120 (392)
T PRK12382         41 FVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRL  120 (392)
T ss_pred             HHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHH
Confidence            44567888877   566667778888999999999999999999888776665543322211100001112233344444


Q ss_pred             HHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHH
Q 014286          329 MFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTF  396 (427)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~  396 (427)
                      +.+.+.+.. .+...+++.|..|+++|+++.++.......+..++|.+.+.+.+..||+..+.+..+.
T Consensus       121 l~G~~~~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~  187 (392)
T PRK12382        121 ILGFGESQL-LTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVL  187 (392)
T ss_pred             HHHHHHHHH-HHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence            444444432 3334447788899999999999999999999999999999999988988665544433

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=99.34  E-value=5.8e-12  Score=113.23  Aligned_cols=152  Identities=16%  Similarity=0.202  Sum_probs=112.9

Q ss_pred             hHHHHhHHHHHHhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchh
Q 014286          244 NAIFYFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASL  320 (427)
Q Consensus       244 ~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (427)
                      ..+.+++-..+++.+....   ......-.+.++.-+..+++.+|+|+.+++..++.+..+-++.+....+        +
T Consensus       388 ~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n--------~  459 (618)
T KOG3762|consen  388 GLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQN--------P  459 (618)
T ss_pred             HHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcC--------c
Confidence            3333444444455553333   3444555667788888999999999999999998888877777665543        3


Q ss_pred             HHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHH-HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Q 014286          321 YLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVH-WVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLM  399 (427)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~-~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~  399 (427)
                      |..+..-++-+...+..+..+.. |++...|++.+.++.++..... .+|-.+|..++|.+.+.+|-+..|.++++.+++
T Consensus       460 W~vLPieilqgit~aliWaa~~s-Y~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~  538 (618)
T KOG3762|consen  460 WMVLPIEILQGITHALIWAAIIS-YASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLV  538 (618)
T ss_pred             hheeeHHHHHHHHHHHHHHHHHH-HHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHH
Confidence            55555666667777766666665 9999999999999999987764 478899999999999999999899888887776


Q ss_pred             HHHHH
Q 014286          400 AVAFV  404 (427)
Q Consensus       400 ~~~~~  404 (427)
                      ..++.
T Consensus       539 ~l~~~  543 (618)
T KOG3762|consen  539 TLALF  543 (618)
T ss_pred             HHHHH
Confidence            65544

>TIGR01272 gluP glucose/galactose transporter

Probab=99.34  E-value=3.7e-11  Score=106.46  Aligned_cols=160  Identities=14%  Similarity=0.108  Sum_probs=101.5

Q ss_pred             hhcccchhHHHHHHHHHHhhhccchhHHHHhHHHHHHh---cCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchh
Q 014286          219 LLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKS---AGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALL  292 (427)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~  292 (427)
                      .++++..+...+..+++..    .......|.+.+..+   .|.++.   .....+..+.++|+++++++.||+++|+.+
T Consensus       136 ~~~~~~~~l~~~~~f~yvg----~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l  211 (310)
T TIGR01272       136 AFQFTHLVLGALGIFVYVG----AEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYL  211 (310)
T ss_pred             HHhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHH
Confidence            4444444443333333333    344444455555542   466654   567777888999999999999999998888


Q ss_pred             hhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHH
Q 014286          293 QWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFF  372 (427)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~  372 (427)
                      ..+..+.+++..+......         ........+.+.+.+. ..|...+...+..|+ +.+++.++. ....+|+++
T Consensus       212 ~~~~~l~~~~~~l~~~~~~---------~~~~~~~~l~g~~~s~-i~P~~~s~a~~~~~~-~~~~asai~-~~~~~Gg~i  279 (310)
T TIGR01272       212 AFNAFLAVLLSIGAALTHG---------YVAMWFVLALGLFNSI-MFPTIFSLALNALGR-HTSQGSGIL-CLAIVGGAI  279 (310)
T ss_pred             HHHHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhh-hhhhhHHHH-HHHHhcchH
Confidence            8777766666543332211         1122233344444443 345545467676674 466777775 677899999


Q ss_pred             HHHHHHHHHHHhccchhHHHHH
Q 014286          373 VGLLFLRLLEQLGPQLLYSIFG  394 (427)
Q Consensus       373 ~~~~~g~l~~~~g~~~~~~~~~  394 (427)
                      .|.+.|.+.|..|.+..+++..
T Consensus       280 ~P~l~G~lad~~g~~~a~~v~~  301 (310)
T TIGR01272       280 VPLLQGSLADCLGIQLAFALPV  301 (310)
T ss_pred             HHHHHHHHHHhccchHHHHHHH
Confidence            9999999999999887776443

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR00897 2A0118 polyol permease family

Probab=99.34  E-value=3.7e-11  Score=111.25  Aligned_cols=157  Identities=15%  Similarity=0.015  Sum_probs=102.5

Q ss_pred             HhHHHHHHhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHH
Q 014286          248 YFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSV  324 (427)
Q Consensus       248 ~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (427)
                      .+.+.+.++.|.+..   .......++..++.++.|++.||+|||+.+..+..+..++.++......    ...+.+...
T Consensus        34 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~l~  109 (402)
T TIGR00897        34 GWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGL----GHANYPLIL  109 (402)
T ss_pred             HhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhc----cCccHHHHH
Confidence            344555577788766   5667788888999999999999999999999988888777654422111    011122233


Q ss_pred             HHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHH-HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHH
Q 014286          325 GGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVIN-FFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAF  403 (427)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~-~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~  403 (427)
                      ....+.+.+.+.. .+.....+.+.+|+++|+++.|+.+...++|. .++|.+.+.+.+..|+...++.......+..++
T Consensus       110 ~~~~i~G~g~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~  188 (402)
T TIGR00897       110 LFYGIRGLGYPLF-AYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFVLTGGVI  188 (402)
T ss_pred             HHHHHHHcchHHH-HhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH
Confidence            3333333333222 23333466788899999999999999999986 578998899888888655554443333333333


Q ss_pred             HHHhcc
Q 014286          404 VKRNVV  409 (427)
Q Consensus       404 ~~~~~~  409 (427)
                      ..+..+
T Consensus       189 ~~~~~~  194 (402)
T TIGR00897       189 ALFSNK  194 (402)
T ss_pred             HHhccC
Confidence            333333

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK11043 putative transporter; Provisional

Probab=99.33  E-value=7e-11  Score=109.57  Aligned_cols=150  Identities=15%  Similarity=0.091  Sum_probs=109.6

Q ss_pred             HHHHHHhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHH
Q 014286          250 SSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGG  326 (427)
Q Consensus       250 ~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (427)
                      .+.+.++.+.+..   .......++..++.++.|+++||+|||+.+..+..+..++........+        .+...+.
T Consensus        29 ~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~--------~~~l~~~  100 (401)
T PRK11043         29 FKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVES--------AAQLLVL  100 (401)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcC--------HHHHHHH
Confidence            3455677888776   4566677788899999999999999999999888877777666654332        1233333


Q ss_pred             HHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHH
Q 014286          327 MLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKR  406 (427)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  406 (427)
                      ..+.+.+.+.. .+....++.|.+|+++++...+..+....++..++|.+.+.+.+..||+..|.+.+++.++..+....
T Consensus       101 ~~l~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~  179 (401)
T PRK11043        101 RFVQAVGVCSA-AVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLR  179 (401)
T ss_pred             HHHHHhhhHHH-HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH
Confidence            33333332222 23344577888998889999999998899999999999999999999999998888777766555544


Q ss_pred             hc
Q 014286          407 NV  408 (427)
Q Consensus       407 ~~  408 (427)
                      ..
T Consensus       180 ~~  181 (401)
T PRK11043        180 LK  181 (401)
T ss_pred             cC
Confidence            33

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.33  E-value=6.9e-11  Score=112.00  Aligned_cols=151  Identities=17%  Similarity=0.090  Sum_probs=100.6

Q ss_pred             hhHHHHhHHHHHHhcCCChhH---HHHHHHHHHHHHHHhHhhhhcc-cCccchhhhhhHHHHHHHHHHHHHhhcCCCCCc
Q 014286          243 INAIFYFSSSVFKSAGLSSGL---ANVFVGIANLLGSVVAMVLMDK-LGRKALLQWSFFSMAVSMAIQVAASSSYIPGSA  318 (427)
Q Consensus       243 ~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (427)
                      +....+...++.++.|.+...   .............+++|+++|| +|||+.+..+.++.+++..++.+...       
T Consensus        38 y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~-------  110 (500)
T PRK09584         38 YGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGH-------  110 (500)
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcc-------
Confidence            333333444555778887763   2222333333445689999999 59999999999888888776654321       


Q ss_pred             hhHHHHHHHHHHHHHHhhcccchhhhhccCcCCccc--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHH
Q 014286          319 SLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRI--RAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTF  396 (427)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~  396 (427)
                      ..+...+...+.+.+.+. ..+...++..|.+|+++  +..+.++.+...++|..++|.+.|++.+..||+..|.+.++.
T Consensus       111 ~~~~l~~~~~l~gig~g~-~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~  189 (500)
T PRK09584        111 DAGIVYMGMATIAVGNGL-FKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVG  189 (500)
T ss_pred             cHHHHHHHHHHHHHhhhc-ccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHH
Confidence            112223333334444333 33455558889887543  456788889999999999999999999999999999887754


Q ss_pred             HHHHH
Q 014286          397 CLMAV  401 (427)
Q Consensus       397 ~~~~~  401 (427)
                      ..++.
T Consensus       190 ~~i~~  194 (500)
T PRK09584        190 MLITV  194 (500)
T ss_pred             HHHHH
Confidence            44443

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.32  E-value=9.7e-11  Score=107.95  Aligned_cols=171  Identities=12%  Similarity=0.094  Sum_probs=114.3

Q ss_pred             cchhHHHHHHHHHHhhhccchhHHHHhHHHHHHhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHH
Q 014286          223 RHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSM  299 (427)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~  299 (427)
                      |+++.+++..++..+..    .......+...++.+.+..   +....+.+...+..++.|+++||+|||+++..+..+.
T Consensus         3 ~~f~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~   78 (393)
T PRK11195          3 KGFYAIMAAQFFSALAD----NALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIK   78 (393)
T ss_pred             CcHHHHHHHHHHHHHHH----HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHH
Confidence            45555555555544422    2222333344566666554   5666777888899999999999999999999999888


Q ss_pred             HHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 014286          300 AVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLR  379 (427)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~  379 (427)
                      +++.+.+....+           .....++.+.+. ....|...+++.|.+|+++|+++.|+.+....++..+||.++|.
T Consensus        79 ~~~~~~~~~~~~-----------~~~~r~l~G~~~-a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~  146 (393)
T PRK11195         79 LLGCLLMLFGIH-----------PLLAYGLVGIGA-AAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGA  146 (393)
T ss_pred             HHHHHHHHHHHH-----------HHHHHHHHHHHH-HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777665544321           122222333332 34457777799999999999999999999999999999999999


Q ss_pred             HHHHhccchhHHHHHHHHHHHHHHHHHhccCC
Q 014286          380 LLEQLGPQLLYSIFGTFCLMAVAFVKRNVVET  411 (427)
Q Consensus       380 l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (427)
                      +.+.. +...+.+.+.+.+++. +..+..||.
T Consensus       147 l~~~~-~~~~~~i~~~~~~~~~-~~~~~l~~~  176 (393)
T PRK11195        147 LADPH-AEAALAVCALIYLLAA-LFNLFIPRL  176 (393)
T ss_pred             HHHHH-HHHHHHHHHHHHHHHH-HHHhcCCCC
Confidence            98854 5555555544443333 333445543

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.32  E-value=2.9e-11  Score=114.26  Aligned_cols=160  Identities=17%  Similarity=0.068  Sum_probs=114.1

Q ss_pred             HHHhHHHHHHhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHH
Q 014286          246 IFYFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYL  322 (427)
Q Consensus       246 ~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (427)
                      .....|.+.++++.+..   +....+.++..++.++.|+++||+|||+++..+.++.++..+.+.......   ..+.+.
T Consensus        48 ~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~  124 (467)
T PRK09556         48 FKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSG---SVSLGL  124 (467)
T ss_pred             hhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcc---cchHHH
Confidence            33446777888888766   566667788889999999999999999999888877777766655432111   112234


Q ss_pred             HHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccchhHHHHHHHHHH
Q 014286          323 SVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQL---GPQLLYSIFGTFCLM  399 (427)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~---g~~~~~~~~~~~~~~  399 (427)
                      .++.-.+.+.+.+.. .|....++.|.+|+++||++.|+.+....+|.++++.+...+.+..   +|+..|.+.+++.++
T Consensus       125 l~~~r~l~G~~~~~~-~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~  203 (467)
T PRK09556        125 MIALWALSGFFQSTG-GPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALI  203 (467)
T ss_pred             HHHHHHHHHHHHhcc-chHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHH
Confidence            444444455544444 3555558999999999999999999999999999999887776653   477777777776666


Q ss_pred             HHHHHHHhcc
Q 014286          400 AVAFVKRNVV  409 (427)
Q Consensus       400 ~~~~~~~~~~  409 (427)
                      ..++.+++.+
T Consensus       204 ~~i~~~~~~~  213 (467)
T PRK09556        204 IGFIGLRYGS  213 (467)
T ss_pred             HHHHHHHhCC
Confidence            5555544443

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.31  E-value=8.6e-10  Score=99.34  Aligned_cols=349  Identities=15%  Similarity=0.128  Sum_probs=194.3

Q ss_pred             HHHHHHhhhhhccccccc-cchhhhhhhccC----CCCchhHHHHHHHHHHHHHHHHHHhHHhhhccc-chhHHHHHhhH
Q 014286           53 VLVATLSSFLFGYHLGVV-NEPLESISLDLG----FNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV-GRRRAFQLCAL  126 (427)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~----~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~-Grr~~l~~~~~  126 (427)
                      +..++..-+...++..-+ ++..-.+..+++    +++++.  .-+.+.|..-.-+..+++|+++||+ |+|+++..|.+
T Consensus        23 l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A--~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGai  100 (498)
T COG3104          23 LYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHA--TGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAI  100 (498)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhh--HHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence            334444455554444222 333445555555    766655  5667777766678889999999995 99999999999


Q ss_pred             HHHHHHHHHHhhh--hhHHHHHHHHHHhhhccccccceeecccC-----Cch------------------------hhhh
Q 014286          127 PMIIGASISATTR--NLIGMLLGRFVVGTGMGLGPTVAALYVTE-----SPH------------------------WLYK  175 (427)
Q Consensus       127 ~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~~~~~~~i~~-----~~~------------------------~~~~  175 (427)
                      ++.+|-++.+.+.  +...+.++-.+.++|.|..-+....++.|     .||                        |+..
T Consensus       101 l~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~  180 (498)
T COG3104         101 LMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAI  180 (498)
T ss_pred             HHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHH
Confidence            9999999999984  78899999999999999887776666652     111                        0000


Q ss_pred             cCChHHHHH---------HHHHHhCCC--------chh---------------------h---H---HHH----------
Q 014286          176 KGRTAEAEA---------EFEKLLGGS--------HVK---------------------S---S---LAE----------  201 (427)
Q Consensus       176 ~~~~~~~~~---------~~~~~~~~~--------~~~---------------------~---~---~~~----------  201 (427)
                      +..+.....         .+....+..        ..+                     .   .   .+.          
T Consensus       181 ~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i  260 (498)
T COG3104         181 NYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLLVISI  260 (498)
T ss_pred             hhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            000000000         000000000        000                     0   0   000          


Q ss_pred             ------HhhhhcCCCCCcchhHhhhcccchhHHHHHHHHHHhhhccchhHHHHhHHHHHHhc----CCChhHHHHHHHHH
Q 014286          202 ------LSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSA----GLSSGLANVFVGIA  271 (427)
Q Consensus       202 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~  271 (427)
                            ..+....++.. ...++++   ..-.+++...++...+-...+.+..|.....++.    .+++.+..+...+.
T Consensus       261 ~~~~~~~~~~~~~~~~~-~er~r~~---~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~  336 (498)
T COG3104         261 LIAIIYFAEAFRSPKVF-DERRRLL---AAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFF  336 (498)
T ss_pred             HHHHHHHHHHhccCccH-HHHHHHH---HHHHHHHHHHHHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHH
Confidence                  00000000000 0000000   1112222233333333333444455554444332    24555777777777


Q ss_pred             HHHHHHhHhhhhcccCcc-------chhhhhhHHHHHHHHHHHHHhhcCC--CCCchhHHHHHHHHHHHHHHhhcccchh
Q 014286          272 NLLGSVVAMVLMDKLGRK-------ALLQWSFFSMAVSMAIQVAASSSYI--PGSASLYLSVGGMLMFVLTFALGAGPVP  342 (427)
Q Consensus       272 ~~~~~~~~g~l~d~~g~~-------~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (427)
                      -++.+++..++..|.+++       .-+.++..+++.+++++........  .+..+.++.+...++..++ -....|+.
T Consensus       337 Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~g-EL~iSpvG  415 (498)
T COG3104         337 IILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSFG-ELFISPVG  415 (498)
T ss_pred             HHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHH-HHHhCHHH
Confidence            777777777776664332       1234556666666666655522221  2334555555544444443 44567787


Q ss_pred             hhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHH------HHHHhccchhHHHHHHHHHHHHHHHHHhc
Q 014286          343 SLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLR------LLEQLGPQLLYSIFGTFCLMAVAFVKRNV  408 (427)
Q Consensus       343 ~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~------l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  408 (427)
                      .+++....|+...+.++++.......+..++..+.+.      ..+.......|..++...++.........
T Consensus       416 Ls~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~~~~~  487 (498)
T COG3104         416 LSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIGILLLLLS  487 (498)
T ss_pred             HHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHhh
Confidence            7799999999888888888777777777777766662      34445566677777777766666554433

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.31  E-value=6.8e-11  Score=111.25  Aligned_cols=184  Identities=19%  Similarity=0.159  Sum_probs=129.9

Q ss_pred             hhcccchhHHHHHHHHHHhhhccchhHHHHhHHHHHHhcCCChhHHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHH
Q 014286          219 LLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFS  298 (427)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~  298 (427)
                      .+|++.++.++.+..+..+..........++.... .......+++.....+-.++.++++|.++||++||++++.+-++
T Consensus         6 plr~~~Fr~lw~a~~iS~lG~~~~~va~~wlv~~l-t~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~   84 (524)
T PF05977_consen    6 PLRNRNFRRLWIAQLISNLGDWMQTVALAWLVTQL-TGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLL   84 (524)
T ss_pred             cccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHH
Confidence            46788999988888887776555444444433221 11222222455555667778889999999999999999998887


Q ss_pred             HHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHH
Q 014286          299 MAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFL  378 (427)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g  378 (427)
                      .++....+.+....   +..+.+.+++..++.+.+.. ...|...+++.|++|+++...+.++.+...++...+||.++|
T Consensus        85 ~~~~~~~L~~l~~~---~~~~~~~Ll~~~fl~g~~~a-~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG  160 (524)
T PF05977_consen   85 RALVALLLAVLAFF---GLLSPWLLLILTFLLGIGSA-FFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGG  160 (524)
T ss_pred             HHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHH
Confidence            77666555544322   23334444444444444433 346777779999999999999999999999999999999999


Q ss_pred             HHHHHhccchhHHHHHHHHHHHHHHHHHh
Q 014286          379 RLLEQLGPQLLYSIFGTFCLMAVAFVKRN  407 (427)
Q Consensus       379 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  407 (427)
                      .++...|....|.+.++..++..+.....
T Consensus       161 ~Lva~~G~~~~f~inalsfl~~i~~l~~~  189 (524)
T PF05977_consen  161 ILVAFFGAAAAFLINALSFLISILALLRW  189 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            99999999889988777666655444433

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.28  E-value=5.1e-11  Score=92.71  Aligned_cols=135  Identities=19%  Similarity=0.187  Sum_probs=101.9

Q ss_pred             HHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcccchhhhhc
Q 014286          267 FVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLL  346 (427)
Q Consensus       267 ~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (427)
                      ...++..++.+..+++.||+|||+.+..+.....++.+......+        .+.......+.+.+.+. ..+....+.
T Consensus         6 ~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~g~~~~~-~~~~~~~~~   76 (141)
T TIGR00880         6 GYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSN--------ITVLIIARFLQGFGAAF-ALVAGAALI   76 (141)
T ss_pred             eehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcc--------HHHHHHHHHHHHHHHHH-HHHhHHHHH
Confidence            456778889999999999999999998888777777665554321        22333334444443332 345555588


Q ss_pred             cCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhccC
Q 014286          347 PEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVE  410 (427)
Q Consensus       347 ~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  410 (427)
                      .|.+|+++|+++.++.+....++..++|.+.+.+.+..+|+..+.+.+.+.++..+...+..+|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (141)
T TIGR00880        77 ADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE  140 (141)
T ss_pred             HHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            9999999999999999999999999999999999998899888888887777776666555443

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.28  E-value=4.9e-10  Score=103.05  Aligned_cols=164  Identities=9%  Similarity=-0.008  Sum_probs=106.2

Q ss_pred             chhHHHHhHHHHHH-hcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCC
Q 014286          242 GINAIFYFSSSVFK-SAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGS  317 (427)
Q Consensus       242 ~~~~~~~~~~~~~~-~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (427)
                      .........+.+.+ +++++..   +...+..+...++++..|++.||+|.|+++..+.++..+..+...+....   ..
T Consensus        49 ~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~---~~  125 (462)
T PRK15034         49 VWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQN---PN  125 (462)
T ss_pred             HHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcc---cC
Confidence            34444444445444 6888877   45556667777888889999999999999999888888777776654211   01


Q ss_pred             chhHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHH-----HHh--------
Q 014286          318 ASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLL-----EQL--------  384 (427)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~-----~~~--------  384 (427)
                      .+.+..++...+.+.+ +. ..+.....+++.+|+++||++.|+....+++|..+++.+...+.     +..        
T Consensus       126 ~s~~~lli~r~l~Gig-g~-~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~  203 (462)
T PRK15034        126 TPFGIFIVIALLCGFA-GA-NFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQA  203 (462)
T ss_pred             CCHHHHHHHHHHHHHH-HH-hHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence            1223344444444443 32 34445558899999999999999998777777776666555433     322        


Q ss_pred             -----ccchhHHHHHHHHHHHHHHHHHhccC
Q 014286          385 -----GPQLLYSIFGTFCLMAVAFVKRNVVE  410 (427)
Q Consensus       385 -----g~~~~~~~~~~~~~~~~~~~~~~~~~  410 (427)
                           +++.+..+...+.++..++.++..++
T Consensus       204 ~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~  234 (462)
T PRK15034        204 DGSVMSLANAAWIWVPLLAIATIAAWSGMND  234 (462)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence                 34555556666666666666555544

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.26  E-value=2.1e-10  Score=107.32  Aligned_cols=157  Identities=12%  Similarity=0.016  Sum_probs=101.1

Q ss_pred             hhHHHHhHHHHHHhcC---CChh---H---HHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcC
Q 014286          243 INAIFYFSSSVFKSAG---LSSG---L---ANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSY  313 (427)
Q Consensus       243 ~~~~~~~~~~~~~~~g---~~~~---~---~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (427)
                      .....+..+.+.++.+   .+..   .   ......++..+++++.|+++||+|||+.+..+..+.+++.++.++.++..
T Consensus        38 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~  117 (432)
T PRK10406         38 FYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYE  117 (432)
T ss_pred             HHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCch
Confidence            3345555666666653   2222   1   22333445558999999999999999999999999988888776654321


Q ss_pred             CCCCchhHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHH--------HHhc
Q 014286          314 IPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLL--------EQLG  385 (427)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~--------~~~g  385 (427)
                      ..........++.-++.+.+.+ +..+...+++.|.+|+++||.+.++.+.....|..+++.+...+.        +..|
T Consensus       118 ~~~~~~~~~l~~~R~l~G~g~g-~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g  196 (432)
T PRK10406        118 TIGTWAPALLLLARLFQGLSVG-GEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWG  196 (432)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhh-hhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccc
Confidence            0000111122333333343333 234566679999999999999999888777777777776654443        2578


Q ss_pred             cchhHHHHHHHHHHH
Q 014286          386 PQLLYSIFGTFCLMA  400 (427)
Q Consensus       386 ~~~~~~~~~~~~~~~  400 (427)
                      |+..|.+.++..++.
T Consensus       197 Wr~~F~i~~~~~ll~  211 (432)
T PRK10406        197 WRIPFALGAVLAVVA  211 (432)
T ss_pred             hHHHHHHHHHHHHHH
Confidence            999998766665544

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.26  E-value=7e-11  Score=111.77  Aligned_cols=147  Identities=14%  Similarity=0.048  Sum_probs=108.9

Q ss_pred             cCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHH
Q 014286          257 AGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLT  333 (427)
Q Consensus       257 ~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (427)
                      ++.+..   .....+.++..++.+..|++.||+|+|+.+..+.++..++.++.......      ..+..++.-++.+.+
T Consensus        71 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~------~~~~l~~~r~~~G~~  144 (465)
T TIGR00894        71 FKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGG------GIALVVFCRVIQGLA  144 (465)
T ss_pred             CCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHc------CchHHHHHHHHHHHh
Confidence            344444   56677778899999999999999999999998888777776665433211      112233333334433


Q ss_pred             HhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhHHHHHHHHHHHHHHHHHhccC
Q 014286          334 FALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQL-GPQLLYSIFGTFCLMAVAFVKRNVVE  410 (427)
Q Consensus       334 ~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~  410 (427)
                      .+ ...+....++.|.+|+++|+++.|+.+....+|..+++.+.+.+.+.. ||+..|.+.+++.++..++.+...++
T Consensus       145 ~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~  221 (465)
T TIGR00894       145 QG-SVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPAD  221 (465)
T ss_pred             cc-cchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcC
Confidence            33 334556669999999999999999999999999999999999999984 99999999888777666555554443

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.26  E-value=2.8e-10  Score=105.05  Aligned_cols=147  Identities=10%  Similarity=0.017  Sum_probs=112.3

Q ss_pred             hHHHHhHHHHHHhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchh
Q 014286          244 NAIFYFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASL  320 (427)
Q Consensus       244 ~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (427)
                      .......|.+.++++.+..   +......++..++.+..|++.||+|||+++..+..+.+++.+...+.++.        
T Consensus        26 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~--------   97 (393)
T PRK09705         26 TSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQS--------   97 (393)
T ss_pred             hccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcch--------
Confidence            4455667888888998876   56666778888999999999999999999999999999999988875542        


Q ss_pred             HHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhHHHHHHHHHH
Q 014286          321 YLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQL-GPQLLYSIFGTFCLM  399 (427)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~-g~~~~~~~~~~~~~~  399 (427)
                      +..+..-++.+.+.+... +....++.+.+| ++|+.++|+.......|..+++.+.+.+.++. +|+..+.+.++..++
T Consensus        98 ~~ll~~r~l~Gig~~~~~-~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~  175 (393)
T PRK09705         98 ALLLSSALLGGVGIGIIQ-AVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVV  175 (393)
T ss_pred             HHHHHHHHHHHhHHHHHh-hhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            234444455555555433 344447788887 77999999999999999999999999988875 788777665555443


Q ss_pred             H
Q 014286          400 A  400 (427)
Q Consensus       400 ~  400 (427)
                      .
T Consensus       176 ~  176 (393)
T PRK09705        176 A  176 (393)
T ss_pred             H
Confidence            3

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.25  E-value=2.1e-10  Score=109.07  Aligned_cols=144  Identities=16%  Similarity=0.075  Sum_probs=96.9

Q ss_pred             HHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcccchhhhh
Q 014286          266 VFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLL  345 (427)
Q Consensus       266 ~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (427)
                      ....++..++.++.|+++||+|||+++..+.++.+++.++.++.++........+...++.-++.+.+.+ +..+....+
T Consensus        64 ~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g-~~~~~~~~~  142 (490)
T PRK10642         64 SVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVG-GEYTGASIF  142 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhH-hhHHHHHHH
Confidence            3444677789999999999999999999999999999888877654210000000112333334444433 334555669


Q ss_pred             ccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHH--------HHhccchhHHHHHHHHHHHHHHHHHhccCC
Q 014286          346 LPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLL--------EQLGPQLLYSIFGTFCLMAVAFVKRNVVET  411 (427)
Q Consensus       346 ~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~--------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (427)
                      +.|.+|+++||.+.++......+|..+++.+...+.        +..||+..|++.+.+.+++ ++.....+|+
T Consensus       143 ~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~-~~~~~~~~es  215 (490)
T PRK10642        143 VAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIG-LYLRHALEET  215 (490)
T ss_pred             HHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHH-HHHHHcCCCC
Confidence            999999999999999988887788877776654443        2578999998866554433 3333445554

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.25  E-value=1.6e-09  Score=95.63  Aligned_cols=312  Identities=16%  Similarity=0.117  Sum_probs=182.9

Q ss_pred             hhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccc-----hhHHHHH-hhHHHHHHHHHHHhh-----h------
Q 014286           77 ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVG-----RRRAFQL-CALPMIIGASISATT-----R------  139 (427)
Q Consensus        77 i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~G-----rr~~l~~-~~~~~~~~~~~~~~~-----~------  139 (427)
                      +..|++++..-.  +.+.++..+. ....+.+|+.+|+.+     ||..+++ |.++...+..+..++     .      
T Consensus         6 MIvEL~vpA~lv--~~lval~~~~-ap~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~   82 (403)
T PF03209_consen    6 MIVELGVPAWLV--ALLVALHYLV-APLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSS   82 (403)
T ss_pred             HHHHhccHHHHH--HHHHHHHHHH-HHHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccc
Confidence            456777643333  7777766555 457999999999999     8877654 555555555554432     2      


Q ss_pred             -hh--H--HHHHHHHHHhhhccccccceeecccCCchhhhhcCChHHHHHHHHHHh------C--------CCchhhH--
Q 014286          140 -NL--I--GMLLGRFVVGTGMGLGPTVAALYVTESPHWLYKKGRTAEAEAEFEKLL------G--------GSHVKSS--  198 (427)
Q Consensus       140 -~~--~--~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~------~--------~~~~~~~--  198 (427)
                       +.  +  ...+.-.+.|+|.+...+...+++.|.    ...+++.+...++....      +        .+..+..  
T Consensus        83 ~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~----~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~  158 (403)
T PF03209_consen   83 GPFWLGLALAALAFLLYGLGVHASGTSFLALLADL----APEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLI  158 (403)
T ss_pred             cccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhc----CCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHH
Confidence             12  2  234456677888887777777777752    22222222222111100      0        0000000  


Q ss_pred             ------------------H-HHHhh--hhcCCCCC----cchhHhhhcccchhHHHHHHHHHHhhhccchhHHHHhHHHH
Q 014286          199 ------------------L-AELSK--LDRGDDGD----IVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSV  253 (427)
Q Consensus       199 ------------------~-~~~~~--~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (427)
                                        . .|.+.  ..+.++++    ...+++++.+++.++++...++.....+.--.   ..-||=
T Consensus       159 ~v~~~~a~i~~~l~~ia~wg~E~r~~~~~~~~~~~~~~f~~a~~~~~~~~~a~~f~~fl~l~t~a~~~QD~---iLEPyg  235 (403)
T PF03209_consen  159 QVIQGVALIALLLNLIALWGQEPRRSRRAAAAERPRPPFREAWRQVWASPQARRFFVFLFLGTLAFFMQDV---ILEPYG  235 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccCCcccccCCCCCCccHHHHHHHHHhCCChhHHHHHHHHHHHHHHhhHH---HcCCch
Confidence                              0 00000  00011112    23466777788888776665555442221111   112333


Q ss_pred             HHhcCCChh---HHHHHHHHHHHHHHHhHhhhhc-ccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHH
Q 014286          254 FKSAGLSSG---LANVFVGIANLLGSVVAMVLMD-KLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLM  329 (427)
Q Consensus       254 ~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (427)
                      -+.+|++.+   ......+.+.++|-...|++.. |.++++....++....+++.++......     .+.+......++
T Consensus       236 g~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~-----~~~~~~~~~~~l  310 (403)
T PF03209_consen  236 GEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPL-----GSPWLFRPGVFL  310 (403)
T ss_pred             hHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhc-----ccchHHHHHHHH
Confidence            355777776   5677777888888888887766 6777888888888888888776665432     223455566666


Q ss_pred             HHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh----------ccchhHHHHHHHHHH
Q 014286          330 FVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQL----------GPQLLYSIFGTFCLM  399 (427)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~----------g~~~~~~~~~~~~~~  399 (427)
                      ++++.+........ .+.+..++++.|..+|.-...+.+...++..+.|.+.|..          +|..+|.+=++..++
T Consensus       311 ~G~g~G~f~vgals-~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~  389 (403)
T PF03209_consen  311 LGLGNGLFTVGALS-LMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLA  389 (403)
T ss_pred             HHHhhhHHHHHHHH-HHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHH
Confidence            66666554444444 6667777788999999999999999999999999888742          244455555555444


Q ss_pred             HHHHH
Q 014286          400 AVAFV  404 (427)
Q Consensus       400 ~~~~~  404 (427)
                      +.++.
T Consensus       390 a~~ll  394 (403)
T PF03209_consen  390 ALVLL  394 (403)
T ss_pred             HHHHH
Confidence            44443

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.24  E-value=2.4e-10  Score=103.84  Aligned_cols=153  Identities=24%  Similarity=0.287  Sum_probs=115.6

Q ss_pred             hhHHHHhHHHHHHhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCch
Q 014286          243 INAIFYFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSAS  319 (427)
Q Consensus       243 ~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (427)
                      ........+.+.++.+.+..   .......++..++.++.|+++||+|||+.+..+..+..++.+......+        
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~~--------   86 (352)
T cd06174          15 RGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASS--------   86 (352)
T ss_pred             hhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhcc--------
Confidence            33444555666677777766   5666677888899999999999999999999999888888877665422        


Q ss_pred             hHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Q 014286          320 LYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLM  399 (427)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~  399 (427)
                      .+.......+.+.+.+ ...+....+..|.+|+++|+++.++.+....+|..++|.+.+.+.+..+|+..+.+.+++.++
T Consensus        87 ~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (352)
T cd06174          87 LWLLLVGRFLLGLGGG-ALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLL  165 (352)
T ss_pred             HHHHHHHHHHHHcccc-cccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            1233333344443333 234555669999999999999999999999999999999999999998999888887776666


Q ss_pred             HHHHH
Q 014286          400 AVAFV  404 (427)
Q Consensus       400 ~~~~~  404 (427)
                      ..+..
T Consensus       166 ~~~~~  170 (352)
T cd06174         166 LALLL  170 (352)
T ss_pred             HHHHH
Confidence            55443

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.24  E-value=4.8e-10  Score=103.68  Aligned_cols=155  Identities=14%  Similarity=0.116  Sum_probs=113.9

Q ss_pred             hHHHHhHHHHHHhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchh
Q 014286          244 NAIFYFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASL  320 (427)
Q Consensus       244 ~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (427)
                      .......|.+.++.+.+..   +......++..++++..|++.||+|||+.+..+..+.+++..++.....     ..+.
T Consensus        20 ~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~-----~~~~   94 (410)
T TIGR00885        20 DITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAE-----IMNY   94 (410)
T ss_pred             HhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHh-----hccH
Confidence            4444566788888888876   5777788899999999999999999999999999998888776543321     1112


Q ss_pred             HHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHH------------------
Q 014286          321 YLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLE------------------  382 (427)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~------------------  382 (427)
                      +..+...++.+.+.+....+... ++.+..|++++++..++.+....+|..++|.+.+.+..                  
T Consensus        95 ~~~l~~~~l~G~g~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~  173 (410)
T TIGR00885        95 TLFLVGLFILTAGLGFLETAANP-YILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEE  173 (410)
T ss_pred             HHHHHHHHHHHhhHHHHHhhhhH-HHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHH
Confidence            33444445555555544333333 77778888999999999999999999999999887753                  


Q ss_pred             --------HhccchhHHHHHHHHHHHHHHH
Q 014286          383 --------QLGPQLLYSIFGTFCLMAVAFV  404 (427)
Q Consensus       383 --------~~g~~~~~~~~~~~~~~~~~~~  404 (427)
                              ..+|+.+|.+.+++.++..++.
T Consensus       174 ~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~  203 (410)
T TIGR00885       174 LSAIKHSDLASVQTPYMIIGAVVLAVALLI  203 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                    2358888888887766654443

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.24  E-value=4.6e-10  Score=106.75  Aligned_cols=147  Identities=15%  Similarity=0.115  Sum_probs=101.4

Q ss_pred             HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCC---CCC-chhHHHHHHHHHHHHHHhhcc
Q 014286          263 LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYI---PGS-ASLYLSVGGMLMFVLTFALGA  338 (427)
Q Consensus       263 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~  338 (427)
                      +......++..++.++.|+++||+|||+++..+..+..++.+...+......   ..+ ...+..++.-++.+.+.+. .
T Consensus        59 ~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~-~  137 (479)
T PRK10077         59 FCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGL-A  137 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhH-H
Confidence            5677778899999999999999999999999998888777666554211000   001 1112223333444444433 3


Q ss_pred             cchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHH--------HHhccchhHHHHHHHHHHHHHHHHHhccC
Q 014286          339 GPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLL--------EQLGPQLLYSIFGTFCLMAVAFVKRNVVE  410 (427)
Q Consensus       339 ~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~--------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  410 (427)
                      .+...++++|.+|+++||.++++.+....+|..+++.+.+.+.        +..||+..|++.++..++..+. .++.||
T Consensus       138 ~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~-~~~l~~  216 (479)
T PRK10077        138 SMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLML-LYFVPE  216 (479)
T ss_pred             hhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHH-HHcCCC
Confidence            4555568999999999999999999998899888877655443        3468999998877766665443 455666


Q ss_pred             C
Q 014286          411 T  411 (427)
Q Consensus       411 ~  411 (427)
                      +
T Consensus       217 s  217 (479)
T PRK10077        217 T  217 (479)
T ss_pred             C
Confidence            4

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.23  E-value=1.5e-10  Score=110.02  Aligned_cols=142  Identities=15%  Similarity=0.119  Sum_probs=103.4

Q ss_pred             HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcccchh
Q 014286          263 LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVP  342 (427)
Q Consensus       263 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (427)
                      .......++..++.++.|+++||+|||+.+..+.++..++.++.......     ...+..++...+.+.+.+.. .+..
T Consensus        75 ~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~r~l~G~~~~~~-~~~~  148 (481)
T TIGR00879        75 LVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFA-----LSVEMLIVGRVLLGIGVGIA-SALV  148 (481)
T ss_pred             HHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccc-----cchHHHHHHHHHHHhhhhHH-HhHH
Confidence            67777888899999999999999999999999888888877776543321     11123444444445444433 3455


Q ss_pred             hhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHhccchhHHHHHHHHHHHHHHHHHhccCC
Q 014286          343 SLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLF---LRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVET  411 (427)
Q Consensus       343 ~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~---g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (427)
                      ..++.|.+|+++|+.+.++.+....+|..+++.+.   +...+..||+..|.+.+...++.. +..++.+|+
T Consensus       149 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~-~~~~~l~~~  219 (481)
T TIGR00879       149 PMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLF-LGLFFLPES  219 (481)
T ss_pred             HHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHH-HHHhcCCCC
Confidence            56899999999999999999999999999999988   555566789988888555544443 333445553

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.23  E-value=4.7e-10  Score=103.08  Aligned_cols=156  Identities=13%  Similarity=-0.035  Sum_probs=102.1

Q ss_pred             HHhHHHHHHhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhh-hhHHHHHHHHHHHHHhhcCCCCCchhHH
Q 014286          247 FYFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQW-SFFSMAVSMAIQVAASSSYIPGSASLYL  322 (427)
Q Consensus       247 ~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (427)
                      +....++.++.|.+..   .......+...+..++.|+++||+|||+.+.. +.....++.++.....+        .+.
T Consensus        18 ~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~--------~~~   89 (375)
T TIGR00899        18 PTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNRN--------YFL   89 (375)
T ss_pred             hHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcch--------HHH
Confidence            3334445567788776   44455566777888999999999999887654 44444444444443221        122


Q ss_pred             HHHHHHHHHHHHhhcccchhhhhccCcCCccchhhH--HHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Q 014286          323 SVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKA--MAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMA  400 (427)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~--~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~  400 (427)
                      .++...+.+.. .....|....+..|..|++.|+.+  .+.......+|..++|.+.+.+.+..||+..|++.+.+.++.
T Consensus        90 l~~~~~~~g~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~  168 (375)
T TIGR00899        90 LLVLGVLLSSF-ASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLC  168 (375)
T ss_pred             HHHHHHHHHhh-hhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            22222222222 223345555577777776666644  577777888999999999999999999999999988877777


Q ss_pred             HHHHHHhccCC
Q 014286          401 VAFVKRNVVET  411 (427)
Q Consensus       401 ~~~~~~~~~~~  411 (427)
                      .++.++..||.
T Consensus       169 ~~~~~~~~~~~  179 (375)
T TIGR00899       169 GVLVWLFLPSY  179 (375)
T ss_pred             HHHHHHhCCCc
Confidence            66665656653

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK15075 citrate-proton symporter; Provisional

Probab=99.21  E-value=2.7e-10  Score=106.62  Aligned_cols=162  Identities=17%  Similarity=0.092  Sum_probs=103.1

Q ss_pred             HHHHHhhhccchhHHHHhHHHHHHhcCCChhH----HHHHH-----HHHHHHHHHhHhhhhcccCccchhhhhhHHHHHH
Q 014286          232 STLFALQQLSGINAIFYFSSSVFKSAGLSSGL----ANVFV-----GIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVS  302 (427)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~-----~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~  302 (427)
                      ..+..+....-........|.+.++++.+...    .....     .+...++.++.|++.||+|||+.+..+..+..++
T Consensus        20 ~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~   99 (434)
T PRK15075         20 VTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLSIMASG   99 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHHHHHHH
Confidence            33333333334556667788888888765541    11111     1222467889999999999999999999988888


Q ss_pred             HHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHH-
Q 014286          303 MAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLL-  381 (427)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~-  381 (427)
                      .+++.+..+............++.-++.+.+.+.. .+....++.|.+|+++|+++.++.+...++|..+++.+++.+. 
T Consensus       100 ~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~-~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~  178 (434)
T PRK15075        100 TLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVE-LGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLNQ  178 (434)
T ss_pred             HHHHHhCCcHHHHHHHHHHHHHHHHHHhhcccccc-HHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88777654321000000011222233333333322 3334458999999999999999999988888888887776653 


Q ss_pred             -------HHhccchhHHHHH
Q 014286          382 -------EQLGPQLLYSIFG  394 (427)
Q Consensus       382 -------~~~g~~~~~~~~~  394 (427)
                             +..||+..|++..
T Consensus       179 ~~~~~~~~~~gWr~~f~~~~  198 (434)
T PRK15075        179 WLSPAQMAEWGWRIPFLIGC  198 (434)
T ss_pred             hCCHHHHhccchHHHHHHHH
Confidence                   4678998887643

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.20  E-value=1.2e-09  Score=104.18  Aligned_cols=145  Identities=17%  Similarity=0.149  Sum_probs=102.3

Q ss_pred             HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcccchh
Q 014286          263 LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVP  342 (427)
Q Consensus       263 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (427)
                      .......++.+++.++.|+++||+|||+.+..+.++..++.++........  .....+..++.-++.+.+.+.. .+..
T Consensus        60 ~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~r~l~G~~~g~~-~~~~  136 (502)
T TIGR00887        60 AVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSS--PKSVMATLCFWRFWLGVGIGGD-YPLS  136 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcc--cchHHHHHHHHHHHHHHHHhhh-hHHH
Confidence            567777888999999999999999999999998888888777665543210  0011233444444555544433 3455


Q ss_pred             hhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HhccchhHHHHHHHHHH
Q 014286          343 SLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLE-----------------------QLGPQLLYSIFGTFCLM  399 (427)
Q Consensus       343 ~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~-----------------------~~g~~~~~~~~~~~~~~  399 (427)
                      ..++.|.+|++.|+++.++.+....+|..+++.+...+..                       ..+|+..+.+.++..++
T Consensus       137 ~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i  216 (502)
T TIGR00887       137 AIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALL  216 (502)
T ss_pred             HHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHH
Confidence            5699999999999999999999999999999988766542                       13688888665555444


Q ss_pred             HHHHHHHhccCC
Q 014286          400 AVAFVKRNVVET  411 (427)
Q Consensus       400 ~~~~~~~~~~~~  411 (427)
                      . ++..++.||+
T Consensus       217 ~-~~~~~~lpES  227 (502)
T TIGR00887       217 A-LYFRLTIPET  227 (502)
T ss_pred             H-HHHHHhCCCC
Confidence            3 3334566775

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.19  E-value=2.7e-10  Score=98.78  Aligned_cols=94  Identities=20%  Similarity=0.275  Sum_probs=79.4

Q ss_pred             ccchhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHhhHHHHHHHHHHHhhhhhHHHHHHHH
Q 014286           70 VNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRF  149 (427)
Q Consensus        70 ~~~~~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~  149 (427)
                      -+|.+-.+-+++|++..+.  +.+....+....+..++.|.++||+|||+.-+..+++++++++ +-..++++.++++|+
T Consensus        53 QGpY~Y~LY~~yg~~~~qI--a~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl-~k~~~~~~~L~~GRv  129 (354)
T PF05631_consen   53 QGPYLYALYESYGFSEHQI--AILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL-TKHSSNYPVLLLGRV  129 (354)
T ss_pred             hcchhHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHhccccHHHHHHHH
Confidence            3555555667899876666  8999999999999999999999999999999999999999996 556689999999999


Q ss_pred             HHhhhccccccceeecc
Q 014286          150 VVGTGMGLGPTVAALYV  166 (427)
Q Consensus       150 l~G~~~g~~~~~~~~~i  166 (427)
                      +.|++.+..+..--++.
T Consensus       130 lgGiaTSLLfS~FEsW~  146 (354)
T PF05631_consen  130 LGGIATSLLFSAFESWM  146 (354)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999988777655443

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.19  E-value=8.9e-10  Score=96.97  Aligned_cols=161  Identities=14%  Similarity=0.017  Sum_probs=121.0

Q ss_pred             chhHHHHhHHHHHHhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCc
Q 014286          242 GINAIFYFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSA  318 (427)
Q Consensus       242 ~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (427)
                      .+.......+.+.++++++++   ++..+..+.+.+.++..|.+.||+|.|+....+.++..+..+.+.+.....     
T Consensus        29 VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~-----  103 (417)
T COG2223          29 VWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYP-----  103 (417)
T ss_pred             HHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCC-----
Confidence            455555556666688899888   455666677778889999999999999999999999888888877765432     


Q ss_pred             hhHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cchhHHHHHH
Q 014286          319 SLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLG---PQLLYSIFGT  395 (427)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g---~~~~~~~~~~  395 (427)
                      +.+..+++.++.  +.+.+...+...++++.+|+|++|.+.|++. .+|+|..+...+...+....|   |+....+...
T Consensus       104 ~~~~ll~~gll~--G~~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~  180 (417)
T COG2223         104 STWQLLVIGLLL--GLAGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVV  180 (417)
T ss_pred             chHHHHHHHHHH--hcccceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            112333332222  2333344555558999999999999999999 999999999999999999888   8888888877


Q ss_pred             HHHHHHHHHHHhccC
Q 014286          396 FCLMAVAFVKRNVVE  410 (427)
Q Consensus       396 ~~~~~~~~~~~~~~~  410 (427)
                      ..++..+..++...+
T Consensus       181 ~l~v~~v~~~~~~~d  195 (417)
T COG2223         181 ALAIAAVLAWLGMND  195 (417)
T ss_pred             HHHHHHHHHHHHhCC
Confidence            777777777666543

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.18  E-value=9e-10  Score=102.77  Aligned_cols=181  Identities=13%  Similarity=0.057  Sum_probs=104.9

Q ss_pred             hhcccchhHHHHHHHHHHhhhccchhHHHHhHHHHHHhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhh
Q 014286          219 LLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWS  295 (427)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~  295 (427)
                      .++++.++...+..++..+..   ....+++..++.++.|.+..   .......+...+++++.|+++||+|||+.+..+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~   82 (420)
T PRK09528          6 YLKNPNYWIFSLFFFFFFFIW---SSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWI   82 (420)
T ss_pred             hhcCcchHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHH
Confidence            345566666555444444322   23344445555556888876   567777888899999999999999999998776


Q ss_pred             hHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhccc---chhhhhccCcCCccchhhHHHHHHHHHHHHHHH
Q 014286          296 FFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAG---PVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFF  372 (427)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~  372 (427)
                      ..+.+++...+.......   ... ........+.....+....   +....+..+ .+ ++++...|..+....+|..+
T Consensus        83 ~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~g~~~g~~~~~~~~g~~i  156 (420)
T PRK09528         83 ISGLLVLFGPFFIYVFAP---LLQ-YNILLGAIVGGIYLGFGFLAGAGAIEAYIER-VS-RRSGFEYGRARMWGSLGWAL  156 (420)
T ss_pred             HHHHHHHHHHHHHHHHHH---HHH-HHHHHHHHHHHHHhhhhhccchhhhhhHHHH-HH-hhccccchhhHHhhhHHHHH
Confidence            555444332211110000   000 0011111111111111111   122212222 22 45677888999999999999


Q ss_pred             HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhcc
Q 014286          373 VGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVV  409 (427)
Q Consensus       373 ~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  409 (427)
                      +|.+.|.+.+ .+|+..|++.++++++..++.+...+
T Consensus       157 ~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~  192 (420)
T PRK09528        157 CAFIAGILFN-INPQINFWLGSGSALILLVLLFFAKP  192 (420)
T ss_pred             HHHHHHHHHh-cCchHhHHHHHHHHHHHHHHHhcccc
Confidence            9999999887 48888888877777666555544433

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.18  E-value=9.4e-10  Score=115.62  Aligned_cols=186  Identities=16%  Similarity=0.071  Sum_probs=114.1

Q ss_pred             HhhhcccchhHHHHHHHHHHhhhccchhHHHHhHHHHHH-hcCCChh----HHHHHHHHHHHHHHHhHhhhhcccCccch
Q 014286          217 EELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFK-SAGLSSG----LANVFVGIANLLGSVVAMVLMDKLGRKAL  291 (427)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~----~~~~~~~~~~~~~~~~~g~l~d~~g~~~~  291 (427)
                      .++++++.++.++...++..+........+..+..+... ..+.+..    +......+..++.++++|+++||+|||++
T Consensus         5 ~~l~~~~~f~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~   84 (1140)
T PRK06814          5 LYLMKSRRFAPLFWTQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKL   84 (1140)
T ss_pred             hhhhhccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHH
Confidence            346677777777766666555433223333333332222 2222212    44555667778889999999999999997


Q ss_pred             hhhhhHHHHHHH--HHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHH
Q 014286          292 LQWSFFSMAVSM--AIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVI  369 (427)
Q Consensus       292 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g  369 (427)
                      +.....+..+..  .++....       .+.+..++..++.+.+.+ ...|...+++.+.+|+++++.++|+.++...+|
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~-------~s~~~l~~~~~l~gi~~a-~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig  156 (1140)
T PRK06814         85 AKILKFAEIGIAALAIYGFHL-------NSVPLLFAALFLMGIHSA-LFGPIKYSILPDHLNKDELLGANALVEAGTFIA  156 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-------hhHHHHHHHHHHHHHHHH-hhchHHHHhhHhhcCccccchhhHHHHHHHHHH
Confidence            644222222111  1111111       112344444444444433 446777779999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhccCC
Q 014286          370 NFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVET  411 (427)
Q Consensus       370 ~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (427)
                      .++||.++|.+.+..||...|...+++.++ .++..+..++.
T Consensus       157 ~~igp~l~g~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  197 (1140)
T PRK06814        157 ILLGTIIGGLATISGNFVILVALLMGIAVL-GWLASLFIPKT  197 (1140)
T ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHH-HHHHHhhCCCC
Confidence            999999999999999998887433333333 33343444443

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.17  E-value=7.4e-11  Score=102.38  Aligned_cols=141  Identities=16%  Similarity=0.105  Sum_probs=117.8

Q ss_pred             HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcccchh
Q 014286          263 LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVP  342 (427)
Q Consensus       263 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (427)
                      +++....+.+++.+++.|.+.||+|+|..+.+|.+.+..+.+++++....        +..+++=.+-+.+.+.....-.
T Consensus       110 ~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy--------~~l~vAR~LQgvgsA~~~tsgl  181 (464)
T KOG3764|consen  110 LLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSY--------PMLFVARSLQGVGSAFADTSGL  181 (464)
T ss_pred             HHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchh--------HHHHHHHHHhhhhHHHHHhhhH
Confidence            67788889999999999999999999999999999999999998876543        3555556666666655444444


Q ss_pred             hhhccCcCCccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhccCCC
Q 014286          343 SLLLPEIFPSRI-RAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETK  412 (427)
Q Consensus       343 ~~~~~~~~p~~~-~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (427)
                       +++++.+|.+. |++++|+.-.+..+|..+||+++|.+++..|++.+|+++++++++-..+.++..+.++
T Consensus       182 -amlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~  251 (464)
T KOG3764|consen  182 -AMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTE  251 (464)
T ss_pred             -HHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccc
Confidence             48899998765 6999999999999999999999999999999999999999999998877766655443

>PRK09952 shikimate transporter; Provisional

Probab=99.17  E-value=9.6e-10  Score=102.92  Aligned_cols=129  Identities=19%  Similarity=0.052  Sum_probs=88.6

Q ss_pred             HHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcccchhhhhccCc
Q 014286          270 IANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEI  349 (427)
Q Consensus       270 ~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (427)
                      ++..+++++.|+++||+|||+.+..+..+.+++.++..+.++.........+..+..-.+.+.+.+. ..+....++.|.
T Consensus        75 ~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~-~~~~~~~~~~e~  153 (438)
T PRK09952         75 LFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGG-EWGGAALLAVES  153 (438)
T ss_pred             HHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcc-cHHHHHHHHHHh
Confidence            4456788889999999999999999999888888877765432100000011122223333333332 234445699999


Q ss_pred             CCccchhhHHHHHHHHHHHHHHHHHHHHHHHHH--------HhccchhHHHHHHHHHH
Q 014286          350 FPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLE--------QLGPQLLYSIFGTFCLM  399 (427)
Q Consensus       350 ~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~--------~~g~~~~~~~~~~~~~~  399 (427)
                      +|+++|+...+..+....+|..+++.+...+..        ..||+..|.+.++..++
T Consensus       154 ~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~  211 (438)
T PRK09952        154 APKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLI  211 (438)
T ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHH
Confidence            999999999999888888888888777766543        46899999877665443

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.17  E-value=2.7e-10  Score=98.35  Aligned_cols=110  Identities=15%  Similarity=0.112  Sum_probs=89.0

Q ss_pred             HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcccchh
Q 014286          263 LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVP  342 (427)
Q Consensus       263 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (427)
                      .+...+++..++.++..|.++||+|||+++.++.+..++...+.+...++         ..++. .=+..+..-+...+.
T Consensus        72 flGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F---------~afv~-aR~l~Gi~kgnl~v~  141 (451)
T KOG2615|consen   72 FLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNF---------AAFVL-ARFLGGIFKGNLSVI  141 (451)
T ss_pred             hHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHH---------HHHHH-HHHhhhhccCchHHH
Confidence            67778889999999999999999999999999999998887777765542         11111 122233333455666


Q ss_pred             hhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014286          343 SLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLE  382 (427)
Q Consensus       343 ~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~  382 (427)
                      .++++|++++++|+.+++.+++...+|.++||.++|++..
T Consensus       142 rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  142 RAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             HHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence            7799999999999999999999999999999999999987

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.16  E-value=5.5e-10  Score=108.41  Aligned_cols=182  Identities=16%  Similarity=-0.012  Sum_probs=123.6

Q ss_pred             HHHHHHHHHHhhhccchhHHHHhHHHHHHhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHH
Q 014286          227 VVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSM  303 (427)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~  303 (427)
                      .+++...+..+.............+.+.++++++..   ++...+.++..++.++.+++.||.+||+.+.++.++.+++.
T Consensus        33 ~~~~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~  112 (633)
T TIGR00805        33 VFSLLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGS  112 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHH
Confidence            333444434444433344555556777777887765   56777888999999999999999999999999999999998


Q ss_pred             HHHHHHhhcCC------------------------C----------------CC--c-hhHHHHHHHHHHHHHHhhcccc
Q 014286          304 AIQVAASSSYI------------------------P----------------GS--A-SLYLSVGGMLMFVLTFALGAGP  340 (427)
Q Consensus       304 ~~~~~~~~~~~------------------------~----------------~~--~-~~~~~~~~~~~~~~~~~~~~~~  340 (427)
                      ++.++......                        .                ..  . .....+++-++.+++.+ ...+
T Consensus       113 ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~-~~~~  191 (633)
T TIGR00805       113 FLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGAT-PIFP  191 (633)
T ss_pred             HHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCC-cchh
Confidence            88776531100                        0                00  0 11222333333333332 3345


Q ss_pred             hhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------------ccchhHHHHHHHHH
Q 014286          341 VPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQL----------------------GPQLLYSIFGTFCL  398 (427)
Q Consensus       341 ~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~----------------------g~~~~~~~~~~~~~  398 (427)
                      ...+++.|.+|+++|+.+.|+.+....+|..+|+.+++.+.+.+                      +|+..|++.+++.+
T Consensus       192 ~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~  271 (633)
T TIGR00805       192 LGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVAL  271 (633)
T ss_pred             cCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHH
Confidence            66679999999999999999999999999999999999887643                      15566777777776


Q ss_pred             HHHHHHHHhccC
Q 014286          399 MAVAFVKRNVVE  410 (427)
Q Consensus       399 ~~~~~~~~~~~~  410 (427)
                      +.++..+ +.++
T Consensus       272 l~~v~l~-~~p~  282 (633)
T TIGR00805       272 LTSIPFF-FFPK  282 (633)
T ss_pred             HHHHHHH-hCcc
Confidence            6655443 3443

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.15  E-value=1.3e-09  Score=100.35  Aligned_cols=134  Identities=16%  Similarity=0.076  Sum_probs=99.4

Q ss_pred             chhHHHHhHHHHHHhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCc
Q 014286          242 GINAIFYFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSA  318 (427)
Q Consensus       242 ~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (427)
                      .......+.|.+.++.|.+..   .......++..++.++.|+++||+|||+.+..+..+.+++.....+..+       
T Consensus        21 ~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~~~-------   93 (381)
T PRK03633         21 AIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLMVG-------   93 (381)
T ss_pred             hhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------
Confidence            445555667788888888766   5677777888999999999999999999999998888888777665432       


Q ss_pred             hhHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014286          319 SLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQL  384 (427)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~  384 (427)
                       .+..++..++.+.+.+.. .+.....+.+..|+++|+++.+..+...++|..++|.+.+.+.+..
T Consensus        94 -~~~l~~~~~l~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  157 (381)
T PRK03633         94 -FWSWLAWRFVAGIGCAMI-WVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTEL  157 (381)
T ss_pred             -HHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence             233444444444444322 3333335567778889999999999999999999999999887653

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.15  E-value=2.8e-10  Score=107.02  Aligned_cols=150  Identities=14%  Similarity=0.164  Sum_probs=109.5

Q ss_pred             HhHHHHHHhcCCChh--HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHH
Q 014286          248 YFSSSVFKSAGLSSG--LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVG  325 (427)
Q Consensus       248 ~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (427)
                      ..++++..+.|-+..  +......++..++.++.|+++|.+|||..++.+.++..++.++.+...+.        ...+.
T Consensus        65 ~~l~~I~~diG~~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~--------~~~ia  136 (599)
T PF06609_consen   65 SILPYINADIGGSDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNM--------NTFIA  136 (599)
T ss_pred             HHHHHHHHhcCCCccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcH--------HHHHH
Confidence            335667777777665  66677788888999999999999999999999999999999988765443        24455


Q ss_pred             HHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Q 014286          326 GMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVK  405 (427)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  405 (427)
                      +..+.+.+.+  ........++|..|.+.|+.+.++.....-.....++.+...+..+.+|++.|++.++...++.+...
T Consensus       137 g~~l~GvgaG--~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~  214 (599)
T PF06609_consen  137 GMVLYGVGAG--VQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIF  214 (599)
T ss_pred             HHHHHHHhhH--HHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHH
Confidence            5555555443  33344556899999999988877766554444556777766666667899999998887777665544


Q ss_pred             Hh
Q 014286          406 RN  407 (427)
Q Consensus       406 ~~  407 (427)
                      ++
T Consensus       215 ~f  216 (599)
T PF06609_consen  215 FF  216 (599)
T ss_pred             HH
Confidence            33

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>TIGR00901 2A0125 AmpG-related permease

Probab=99.15  E-value=1.9e-09  Score=98.35  Aligned_cols=160  Identities=14%  Similarity=0.040  Sum_probs=107.5

Q ss_pred             HHHHhHHHHHHhcCCChhHHHHHH--HHHHHHHHHhHhhhhccc-----Cccchh-hhhhHHHHHHHHHHHHHhhcCCCC
Q 014286          245 AIFYFSSSVFKSAGLSSGLANVFV--GIANLLGSVVAMVLMDKL-----GRKALL-QWSFFSMAVSMAIQVAASSSYIPG  316 (427)
Q Consensus       245 ~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~g~l~d~~-----g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  316 (427)
                      ......|.+.++.|.+........  .+...+ .++.|+++||+     |||+.+ ..+.+..+++...+.+...     
T Consensus         6 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~-----   79 (356)
T TIGR00901         6 LVGNTLPYWLRSKNVSLKTIGFFSLVGLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVP-----   79 (356)
T ss_pred             hHHhHHHHHHHHcCCCHHHHHHHHHHHHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCc-----
Confidence            344556778888899988444433  333333 78999999997     788864 5555555555444443221     


Q ss_pred             CchhHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------cch
Q 014286          317 SASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLG--------PQL  388 (427)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g--------~~~  388 (427)
                      ....+.......+.. .......+...+++.|.+|+++|+.+.|+......+|..+++.+.+.+.+..|        |+.
T Consensus        80 ~~~l~~l~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~  158 (356)
T TIGR00901        80 STDLPLLAGLAFLIA-FFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGY  158 (356)
T ss_pred             chhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHH
Confidence            112222222222222 22223345566689999999999999999999999999999999999998888        999


Q ss_pred             hHHHHHHHHHHHHHHHHHhccCC
Q 014286          389 LYSIFGTFCLMAVAFVKRNVVET  411 (427)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~  411 (427)
                      .|.+.+++.++..+...+..+|.
T Consensus       159 ~f~i~ai~~l~~~~~~~~~~~e~  181 (356)
T TIGR00901       159 IFFWTALLILPGLLVTLFLAKEP  181 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCC
Confidence            99888887766655554445554

>PRK10133 L-fucose transporter; Provisional

Probab=99.15  E-value=3e-09  Score=99.31  Aligned_cols=134  Identities=13%  Similarity=0.064  Sum_probs=97.6

Q ss_pred             chhHHHHhHHHHHHhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCc
Q 014286          242 GINAIFYFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSA  318 (427)
Q Consensus       242 ~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (427)
                      .......+.|.+.++++.+..   +....+.++..++.+..|++.||+|||+++..+..+..++.+++.....     ..
T Consensus        41 ~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~-----a~  115 (438)
T PRK10133         41 ANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE-----IM  115 (438)
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHh-----cC
Confidence            345566678888888998877   5667788899999999999999999999999999999888876532111     11


Q ss_pred             hhHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 014286          319 SLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLL  381 (427)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~  381 (427)
                      +.+..++..++.+.+.+........ ++.|..|++++....++.+....+|..+++.+.+.+.
T Consensus       116 ~~~~ll~~r~l~G~g~g~~~~~~~~-~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~  177 (438)
T PRK10133        116 NYTLFLVGLFIIAAGLGCLETAANP-FVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhhHHH-HHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1234445555555555544444333 6667767666666899999999999999998877654

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.14  E-value=4.9e-09  Score=96.83  Aligned_cols=157  Identities=11%  Similarity=0.011  Sum_probs=96.3

Q ss_pred             HHHhHHHHHHhcCCChhHHHHH---HHH-HHHHHHHhHhhhhcccCccchhh-hhhHHHHHHHHHHHHHhhcCCCCCchh
Q 014286          246 IFYFSSSVFKSAGLSSGLANVF---VGI-ANLLGSVVAMVLMDKLGRKALLQ-WSFFSMAVSMAIQVAASSSYIPGSASL  320 (427)
Q Consensus       246 ~~~~~~~~~~~~g~~~~~~~~~---~~~-~~~~~~~~~g~l~d~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (427)
                      .+...+++.+++|.+.......   ..+ +...+.+.+++ .||+|||+.+. .+.+...++..++.+....        
T Consensus        35 ~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~--------  105 (393)
T PRK15011         35 TPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNRNY--------  105 (393)
T ss_pred             HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhhHH--------
Confidence            3444455567788887743333   233 44455555666 99999988654 4444444444444433221        


Q ss_pred             HHHHHHHHHHHHHHhhcccchhhhhccCcCCccch--hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Q 014286          321 YLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIR--AKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCL  398 (427)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~  398 (427)
                      +..++...+.+. ......|....+..+..+++.|  +...++.+....+|..++|++.+.+.++.||+..|++.++..+
T Consensus       106 ~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~  184 (393)
T PRK15011        106 FVLLFVGVFLSS-FGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFI  184 (393)
T ss_pred             HHHHHHHHHHHH-HHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHH
Confidence            222222222222 2223455666566675554444  3345777888899999999999999999999999998888777


Q ss_pred             HHHHHHHHhccCCC
Q 014286          399 MAVAFVKRNVVETK  412 (427)
Q Consensus       399 ~~~~~~~~~~~~~~  412 (427)
                      +..+..+...||.+
T Consensus       185 ~~~~~~~~~~~~~~  198 (393)
T PRK15011        185 VCGVMVWLFLPSMR  198 (393)
T ss_pred             HHHHHHHhhcCccC
Confidence            77666666666543

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.13  E-value=4.1e-09  Score=97.69  Aligned_cols=179  Identities=13%  Similarity=0.034  Sum_probs=114.4

Q ss_pred             HHHHHhhhccchhHHHHhHHHHHHhcCCChh---HHHHHHHHHHHHHHHhHhhhhc----ccCccchhhhh-hHHHHHHH
Q 014286          232 STLFALQQLSGINAIFYFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMD----KLGRKALLQWS-FFSMAVSM  303 (427)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d----~~g~~~~~~~~-~~~~~~~~  303 (427)
                      .......++. +.....+.+.+.+..|.+..   .......+..++..++.|+++|    |+|||+.++.+ .....+++
T Consensus        10 ~~~~~Giq~~-~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l   88 (477)
T TIGR01301        10 ASVAAGVQFG-WALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAV   88 (477)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHH
Confidence            3333333443 44445555667788898877   4555566778888999999999    59999988764 55555555


Q ss_pred             HHHHHHhhcCC------CCCchh---HHHHHHHHHHHHHHhhcccchhhhhccCcCCccch--hhHHHHHHHHHHHHHHH
Q 014286          304 AIQVAASSSYI------PGSASL---YLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIR--AKAMAVCMSVHWVINFF  372 (427)
Q Consensus       304 ~~~~~~~~~~~------~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--g~~~g~~~~~~~~g~~~  372 (427)
                      .++.+......      ......   +..+..+.+..........|. .+++.|.+|+++|  +.+.++.+...++|+.+
T Consensus        89 ~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~-rALiaDl~p~~~~~~~~a~~~~~~~~~lG~il  167 (477)
T TIGR01301        89 ILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPC-RAFLADLTGGDARRTRIANAYFSFFMAIGNVL  167 (477)
T ss_pred             HHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHH-HHhcccccCchhHHHHHHHHHHHHHHHHHHHH
Confidence            55554332110      000111   122233333333333333444 4599999998765  67999999999999999


Q ss_pred             HHHHHHHH--HHHh-------------ccchhHHHHHHHHHHHHHHHHHhccCCC
Q 014286          373 VGLLFLRL--LEQL-------------GPQLLYSIFGTFCLMAVAFVKRNVVETK  412 (427)
Q Consensus       373 ~~~~~g~l--~~~~-------------g~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (427)
                      ++.+.+..  .+..             +.+..|.+.+++.+++.++..+..+|..
T Consensus       168 g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~  222 (477)
T TIGR01301       168 GYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENP  222 (477)
T ss_pred             HHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence            99988865  2222             4566788888888888777777777754

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.12  E-value=5.7e-09  Score=98.93  Aligned_cols=162  Identities=15%  Similarity=0.099  Sum_probs=110.8

Q ss_pred             hhHHHHhHHHHHHhcCCChhHHHHHHHHHHH-HHHHhHhhhhccc-----Cccch-hhhhhHHHHHHHHHHHHHhhcCCC
Q 014286          243 INAIFYFSSSVFKSAGLSSGLANVFVGIANL-LGSVVAMVLMDKL-----GRKAL-LQWSFFSMAVSMAIQVAASSSYIP  315 (427)
Q Consensus       243 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~g~l~d~~-----g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  315 (427)
                      ........|.+.++.|.+.........++.. ++.++.++++||+     |||+. +..+.+..+++...+.+...    
T Consensus        28 ~~~~~~~l~~~l~~~g~~~~~ig~~~~~~~~~~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~----  103 (491)
T PRK11010         28 LALTSGTLQAWMTVENIDLKTIGFFSLVGQAYVFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEP----  103 (491)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCC----
Confidence            3444455677788888887744443322222 6889999999999     98875 55666666666655554321    


Q ss_pred             CCchhHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHH-HhccchhHHHHH
Q 014286          316 GSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLE-QLGPQLLYSIFG  394 (427)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~-~~g~~~~~~~~~  394 (427)
                       ..+.+.......+.+.+.+ ...+...++..|.+|+++|+++.++......+|..+++.+.+.+.+ ..||+..|++.+
T Consensus       104 -~~~l~~l~~~~~l~~~~~a-~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a  181 (491)
T PRK11010        104 -GTQLRWLAALAVVIAFCSA-SQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMA  181 (491)
T ss_pred             -cchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHH
Confidence             1222233333333333333 3445566689999999999999999999999999999999999988 469999999988


Q ss_pred             HHHHHHHHHHHHhccCC
Q 014286          395 TFCLMAVAFVKRNVVET  411 (427)
Q Consensus       395 ~~~~~~~~~~~~~~~~~  411 (427)
                      ++.++..+..+ ..+|+
T Consensus       182 ~l~ll~~l~~~-~~~e~  197 (491)
T PRK11010        182 ALLIPCIIATL-LAPEP  197 (491)
T ss_pred             HHHHHHHHHHH-hcCCC
Confidence            87766655443 35554

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=99.12  E-value=8.6e-12  Score=117.68  Aligned_cols=115  Identities=21%  Similarity=0.292  Sum_probs=3.0

Q ss_pred             HHHHHHhhhhhccccccccchhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHhhHHHHHHH
Q 014286           53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGA  132 (427)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~  132 (427)
                      ++..++..+...+..+.....++.+++.|+++.++.  |++.+.+-++..+..++..++.+|..|-|.+-.|.+++++++
T Consensus         5 l~~~~~~~~~q~~~~g~~~~~lttiErRF~l~S~~~--G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~   82 (539)
T PF03137_consen    5 LVFLCLLGLFQMMVSGYVNSSLTTIERRFGLSSSQS--GLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGS   82 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHH
Confidence            445555556667777778888999999999987777  999999999999999999999999888889999999999999


Q ss_pred             HHHHhhh--------------------------------------------------hhHHHHHHHHHHhhhccccccce
Q 014286          133 SISATTR--------------------------------------------------NLIGMLLGRFVVGTGMGLGPTVA  162 (427)
Q Consensus       133 ~~~~~~~--------------------------------------------------~~~~l~~~r~l~G~~~g~~~~~~  162 (427)
                      +++++=+                                                  -+..++++.++.|+|....++.+
T Consensus        83 ~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG  162 (539)
T PF03137_consen   83 LLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLG  162 (539)
T ss_dssp             ---------------------------------------------------------------------SSS--------
T ss_pred             HHHhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccce
Confidence            9876510                                                  02347789999999999999999


Q ss_pred             eecccCC
Q 014286          163 ALYVTES  169 (427)
Q Consensus       163 ~~~i~~~  169 (427)
                      .+|+.|+
T Consensus       163 ~tYiDDn  169 (539)
T PF03137_consen  163 ITYIDDN  169 (539)
T ss_dssp             -------
T ss_pred             eeeeccc
Confidence            9999953

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.11  E-value=6.1e-09  Score=94.43  Aligned_cols=137  Identities=15%  Similarity=0.071  Sum_probs=109.8

Q ss_pred             hhHHHHhHHHHHHhcCCChh----HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCc
Q 014286          243 INAIFYFSSSVFKSAGLSSG----LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSA  318 (427)
Q Consensus       243 ~~~~~~~~~~~~~~~g~~~~----~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (427)
                      =...++..|++.+++|++..    .+...+..+..+..+.+|+++||+|.|+++..+.+...+..++.++....      
T Consensus        42 R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl------  115 (511)
T TIGR00806        42 RPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSV------  115 (511)
T ss_pred             hchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHH------
Confidence            44556667788888898876    46667778888999999999999999999999999888888888876432      


Q ss_pred             hhHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhH
Q 014286          319 SLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLY  390 (427)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~  390 (427)
                        +...+.-++++.+-+...  ....++...+|+++|+++.|+.+....+|.++++++.+. ...+||+...
T Consensus       116 --~~L~i~R~llGvaEA~~~--A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~  182 (511)
T TIGR00806       116 --WHMQLMEVFYSVTMAARI--AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYS  182 (511)
T ss_pred             --HHHHHHHHHHHHHHHHHH--HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHH
Confidence              344555566666666555  555589999999999999999999999999999999999 5567877543

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PTZ00207 hypothetical protein; Provisional

Probab=99.11  E-value=3.8e-09  Score=100.08  Aligned_cols=163  Identities=12%  Similarity=0.063  Sum_probs=107.0

Q ss_pred             hhHHHHhHHHHHHhcCCChhHHHHHHHHHHH--HHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchh
Q 014286          243 INAIFYFSSSVFKSAGLSSGLANVFVGIANL--LGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASL  320 (427)
Q Consensus       243 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (427)
                      ......+.+.+.+++|++......+..++..  ...+..|++.||+|+|+++.++.++..++.++.++......  ..+.
T Consensus        43 ~y~fsv~s~~L~~~lgls~~~l~~i~svg~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i--~~s~  120 (591)
T PTZ00207         43 MYAFNLISGAMQARYNLTQRDLSTITTVGIAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVI--EGSV  120 (591)
T ss_pred             HHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccc--cCcH
Confidence            3344566778888899988743333333222  34457899999999999999999999999988877532110  1223


Q ss_pred             HHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Q 014286          321 YLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMA  400 (427)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~  400 (427)
                      +...+...+.+.+.+...... ...+.+.+| ++||.+.|+......+|+++.+.+...+.. .++...|++.+++.++.
T Consensus       121 ~~l~l~r~l~G~G~~~~~~~~-~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-~~~~~~fl~l~vl~~vv  197 (591)
T PTZ00207        121 VRLSVYNGLMTLGCMLFDLGA-VVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-DNTSAYFFFLMSFALVV  197 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHH
Confidence            333333444444433222233 336677887 779999999999999999865555555444 35667777777777776


Q ss_pred             HHHHHHhccC
Q 014286          401 VAFVKRNVVE  410 (427)
Q Consensus       401 ~~~~~~~~~~  410 (427)
                      .++...+.+.
T Consensus       198 ~ll~~~~vr~  207 (591)
T PTZ00207        198 GILAIVFMRL  207 (591)
T ss_pred             HHHHHhheeC
Confidence            6666555543

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.09  E-value=3.4e-09  Score=111.79  Aligned_cols=156  Identities=19%  Similarity=0.114  Sum_probs=100.4

Q ss_pred             hhcccchhHHHHHHHHHHhhhccchhHHHHhHHHHHHhcCCChh-----HHHHHHHHHHHHHHHhHhhhhcccCccchhh
Q 014286          219 LLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSG-----LANVFVGIANLLGSVVAMVLMDKLGRKALLQ  293 (427)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-----~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~  293 (427)
                      .++++.++.++.+.++..+........   ..+.+...++.+..     +...++.++.+++++++|+++||+|||+++.
T Consensus         5 ~~~~~~f~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~   81 (1146)
T PRK08633          5 LLKIIGFLPLLLTQFLNAFNDLGHKIL---IQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIR   81 (1146)
T ss_pred             hhhhhhhHHHHHHHHHhHHHHHHHHHH---HHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHH
Confidence            455566666555554443322211222   22223333333322     4555667778889999999999999999998


Q ss_pred             hhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHH
Q 014286          294 WSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFV  373 (427)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~  373 (427)
                      .+.++.++..++..+....     ...+..++..++.+.+.+ ...+...+++.|.+|+++|+.++|+......+|.+++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~r~l~G~~~~-~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg  155 (1146)
T PRK08633         82 IVKLFEVGLTLLIVLAYYL-----GWFWLAFAVTFLLGAQSA-IYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAG  155 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHH-----ccHHHHHHHHHHHHHHHH-hhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHH
Confidence            8876665555444333211     112334444444444433 3455666699999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 014286          374 GLLFLRLLEQ  383 (427)
Q Consensus       374 ~~~~g~l~~~  383 (427)
                      +.+++.+.+.
T Consensus       156 ~~l~~~l~~~  165 (1146)
T PRK08633        156 TALFSFLFES  165 (1146)
T ss_pred             HHHHHHHHHh
Confidence            9999999876

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.09  E-value=2.7e-09  Score=98.73  Aligned_cols=162  Identities=16%  Similarity=0.136  Sum_probs=96.8

Q ss_pred             HHHHhHHHHHHhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhH
Q 014286          245 AIFYFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLY  321 (427)
Q Consensus       245 ~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (427)
                      ..++...++.++.|.+..   .......+...++++..|+++||+|||+.+..+....++...................+
T Consensus        21 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (396)
T TIGR00882        21 YFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILV  100 (396)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            333444455556788776   56777788888999999999999999999887665554433322111100000000001


Q ss_pred             HHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Q 014286          322 LSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAV  401 (427)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~  401 (427)
                      ...+..++.+.+.+.. .+....+..|..+  .++...|......++|..++|.+.|.+.+ .+|+..|.+.+++.++..
T Consensus       101 ~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~  176 (396)
T TIGR00882       101 GAIVGGLYLGFVFSAG-AGAIEAYIEKVSR--NSNFEYGKARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFALILM  176 (396)
T ss_pred             HHHHHHHHHHHHhccc-hhhHHHHHHHhhh--hcccccchhhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHH
Confidence            1111122223323222 3333435555422  34556778888889999999999988765 589999988887777766


Q ss_pred             HHHHHhccC
Q 014286          402 AFVKRNVVE  410 (427)
Q Consensus       402 ~~~~~~~~~  410 (427)
                      ++.+...++
T Consensus       177 ~~~~~~~~~  185 (396)
T TIGR00882       177 LLLMFAKPK  185 (396)
T ss_pred             HHHHHhCCC
Confidence            555444443

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.08  E-value=7.3e-09  Score=96.03  Aligned_cols=163  Identities=17%  Similarity=0.135  Sum_probs=112.5

Q ss_pred             chhHHHHhHHHHHHhcCCChhHHHHHHHHH-HHHHHHhHhhhhccc-----Cccc-hhhhhhHHHHHHHHHHHHHhhcCC
Q 014286          242 GINAIFYFSSSVFKSAGLSSGLANVFVGIA-NLLGSVVAMVLMDKL-----GRKA-LLQWSFFSMAVSMAIQVAASSSYI  314 (427)
Q Consensus       242 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~g~l~d~~-----g~~~-~~~~~~~~~~~~~~~~~~~~~~~~  314 (427)
                      .......-.|.++++.|++...+.....+. -.+..++.|+++||+     |||+ .+..+..+.+++...+.+...   
T Consensus        14 ~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~---   90 (402)
T PRK11902         14 PLALTSGTLQAWMTVEGLDIQTIGFFSLVGQAYIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPP---   90 (402)
T ss_pred             hHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCc---
Confidence            455566667888888999988443332221 147788999999999     7765 677777777766666554321   


Q ss_pred             CCCchhHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH-hccchhHHHH
Q 014286          315 PGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQ-LGPQLLYSIF  393 (427)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~-~g~~~~~~~~  393 (427)
                        ....+......++.. .......+...+++.|..|+++|+++.++......+|..+++.+.+.+.+. .||+..|++.
T Consensus        91 --~~~~~~l~~~~~~~~-~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~  167 (402)
T PRK11902         91 --HAALWPLAGLAVLVA-FLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLM  167 (402)
T ss_pred             --cchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHH
Confidence              122233333323333 333344566677999999999999999999998899999999999999885 4999999988


Q ss_pred             HHHHHHHHHHHHHhccCC
Q 014286          394 GTFCLMAVAFVKRNVVET  411 (427)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~  411 (427)
                      +++.++..+.. +..+|+
T Consensus       168 a~~~l~~~l~~-~~~~e~  184 (402)
T PRK11902        168 AGLMLAGALTT-LWAPEP  184 (402)
T ss_pred             HHHHHHHHHHH-HhcCCC
Confidence            88776654433 445544

>TIGR00896 CynX cyanate transporter

Probab=99.06  E-value=5.1e-09  Score=95.42  Aligned_cols=145  Identities=13%  Similarity=0.096  Sum_probs=102.2

Q ss_pred             hHHHHhHHHHHHhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchh
Q 014286          244 NAIFYFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASL  320 (427)
Q Consensus       244 ~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (427)
                      .......|.+.+++|.+..   +......++..++.+..|+++||+|||+.+..+.++..++.+.. ...        +.
T Consensus        17 ~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~--------~~   87 (355)
T TIGR00896        17 TSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAP--------GT   87 (355)
T ss_pred             ccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-Hhc--------cH
Confidence            3344567788888898877   56677788889999999999999999999988887766655544 211        11


Q ss_pred             HHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cchhHHHHHHHHH
Q 014286          321 YLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLG--PQLLYSIFGTFCL  398 (427)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g--~~~~~~~~~~~~~  398 (427)
                      +..++..++.+.+.+... +.....+.|.+| ++|+++.++.+....+|..+++.+.+.+.+..+  |+..|...+++.+
T Consensus        88 ~~l~~~~~~~g~g~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~  165 (355)
T TIGR00896        88 ALLFAGTALIGVGIAIIN-VLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPAL  165 (355)
T ss_pred             HHHHHHHHHHHHHHHHHh-ccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence            233333344444443322 223336677776 689999999999999999999999998887653  7777766655444


Q ss_pred             H
Q 014286          399 M  399 (427)
Q Consensus       399 ~  399 (427)
                      +
T Consensus       166 ~  166 (355)
T TIGR00896       166 L  166 (355)
T ss_pred             H
Confidence            3

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.04  E-value=6.6e-09  Score=96.05  Aligned_cols=130  Identities=19%  Similarity=0.123  Sum_probs=87.6

Q ss_pred             HHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcccchhhhhccCcC
Q 014286          271 ANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIF  350 (427)
Q Consensus       271 ~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (427)
                      ...++.++.|+++||+|||+.+..+.++..++.++.....+.........+..++...+.+.+.+. ..+....++.|.+
T Consensus        47 ~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~-~~~~~~~~~~~~~  125 (394)
T TIGR00883        47 ARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGG-EWGGAALYLAEYA  125 (394)
T ss_pred             HhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccc-cccccHHHhhhcC
Confidence            334688999999999999999999998888887777664432100000011122222333333332 2344455899999


Q ss_pred             CccchhhHHHHHHHHHHHHHHHHHHHHHHHH--------HHhccchhHHHHHHHHHHHH
Q 014286          351 PSRIRAKAMAVCMSVHWVINFFVGLLFLRLL--------EQLGPQLLYSIFGTFCLMAV  401 (427)
Q Consensus       351 p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~--------~~~g~~~~~~~~~~~~~~~~  401 (427)
                      |+++|+...++.+....+|..+++.+.+.+.        +..+|+..|.+.+++.++..
T Consensus       126 ~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~  184 (394)
T TIGR00883       126 PPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGL  184 (394)
T ss_pred             CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHH
Confidence            9999999999999999999999988776654        34678888877666555443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00898 2A0119 cation transport protein

Probab=99.02  E-value=6.7e-09  Score=99.44  Aligned_cols=149  Identities=20%  Similarity=0.146  Sum_probs=107.4

Q ss_pred             HHHHHHhcCCC---h---hHHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHH
Q 014286          250 SSSVFKSAGLS---S---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLS  323 (427)
Q Consensus       250 ~~~~~~~~g~~---~---~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (427)
                      .+.+.++.+.+   .   ++......++.+++.++.|+++||+|||+.+..+.++..++.++..+..+        .+..
T Consensus       112 ~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~--------~~~~  183 (505)
T TIGR00898       112 SSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPN--------YTVF  183 (505)
T ss_pred             cccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHccc--------HHHH
Confidence            34455556665   2   26777888899999999999999999999999988888887776665432        1233


Q ss_pred             HHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHH
Q 014286          324 VGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAF  403 (427)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~  403 (427)
                      ++..++.+++.+ ...+....++.|.+|+++|+.+.++......+|.++++.+.+.+.+   |+..+.+.++..++..+.
T Consensus       184 ~~~r~l~G~~~~-~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~~i~~~~~~~~  259 (505)
T TIGR00898       184 LVFRLLVGMGIG-GIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAVSLPTFLFFLL  259 (505)
T ss_pred             HHHHHHHHhhcc-chHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHH
Confidence            333333333332 3356666699999999999999999988888898888887765543   888888887776666555


Q ss_pred             HHHhccCC
Q 014286          404 VKRNVVET  411 (427)
Q Consensus       404 ~~~~~~~~  411 (427)
                      . ++.+|.
T Consensus       260 ~-~~~~es  266 (505)
T TIGR00898       260 S-WFVPES  266 (505)
T ss_pred             H-HhcCCC
Confidence            4 455653

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.97  E-value=2.2e-08  Score=92.80  Aligned_cols=140  Identities=19%  Similarity=0.089  Sum_probs=115.9

Q ss_pred             HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcccchh
Q 014286          263 LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVP  342 (427)
Q Consensus       263 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (427)
                      ++......+.+++.+.+|++.||+|.|+++..+.++.+++.++..+.....      .+..++.-++.+.+.+.. .|..
T Consensus        77 ~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~------~~~~~~~R~lqGl~~g~~-~pa~  149 (466)
T KOG2532|consen   77 LIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIG------FYLLLVLRFLQGLGQGVL-FPAI  149 (466)
T ss_pred             HHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhc------chhhHHHHHHhHHHHhHH-Hhhh
Confidence            677888899999999999999999999999999999999998888876543      123344445555555544 4455


Q ss_pred             hhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH-hccchhHHHHHHHHHHHHHHHHHhcc
Q 014286          343 SLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQ-LGPQLLYSIFGTFCLMAVAFVKRNVV  409 (427)
Q Consensus       343 ~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~  409 (427)
                      ..+.++-.|+++|++..++.....++|.+++-++.|.+.+. .||+..|++.+++.++..++.+.+..
T Consensus       150 ~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~  217 (466)
T KOG2532|consen  150 GSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYS  217 (466)
T ss_pred             hceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhc
Confidence            55899999999999999999999999999999999999998 99999999999998887777655554

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=98.96  E-value=5.3e-08  Score=89.62  Aligned_cols=145  Identities=15%  Similarity=0.087  Sum_probs=93.6

Q ss_pred             hhHHHHhHHHHHHhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHH-HHHHHHHHHhhcCCCCCc
Q 014286          243 INAIFYFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMA-VSMAIQVAASSSYIPGSA  318 (427)
Q Consensus       243 ~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  318 (427)
                      +.....+.|.+.++.|.+..   .......+...++.++.+.++||++|+........... +..+.+...       ..
T Consensus        20 ~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~   92 (382)
T TIGR00902        20 YGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAAFSAG-------AH   92 (382)
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHh-------hh
Confidence            44555567777788899877   34445567777888999999999998543322221111 111111111       11


Q ss_pred             hhHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Q 014286          319 SLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFC  397 (427)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~  397 (427)
                      +.+..++...+.+.+.+. ..|...++..+  ++++|+++.|.......+|.+++|.+.|.+.+..||+..|.+.+.+.
T Consensus        93 ~~~~l~~~~~l~~~~~~~-~~p~~~al~~~--~~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~  168 (382)
T TIGR00902        93 NAWLLFIAIGLFALFFSA-GMPIGDALANT--WQKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAGL  168 (382)
T ss_pred             hHHHHHHHHHHHHHHHcc-chhHHHHHHHH--HHHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHH
Confidence            123333333334444433 35566656554  24778999999999999999999999999999999999888776553

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=98.96  E-value=1.6e-08  Score=95.02  Aligned_cols=162  Identities=14%  Similarity=0.148  Sum_probs=104.2

Q ss_pred             HhHHHHHHhcCCChh---HHHHHHHHHHHHHHHhHhhhhcc----cCccc-hhhhhhHHHHHHHHHHHHHhhcCCCCCch
Q 014286          248 YFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDK----LGRKA-LLQWSFFSMAVSMAIQVAASSSYIPGSAS  319 (427)
Q Consensus       248 ~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~----~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (427)
                      +..+++.+..|.++.   .......+...+..++.|+++||    +|||+ .+..+....+++.+++...+...  ....
T Consensus        21 ~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~--~~~~   98 (437)
T TIGR00792        21 YLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFS--ATGK   98 (437)
T ss_pred             HHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCC--cchH
Confidence            445556667888887   45555557788889999999998    56644 56666666666666655433211  1111


Q ss_pred             hHHHHHHHHHHHHHHhhcccchhhhhccCcC-CccchhhHHHHHHHHHHHHHHHHHHHHHHHHH-------HhccchhHH
Q 014286          320 LYLSVGGMLMFVLTFALGAGPVPSLLLPEIF-PSRIRAKAMAVCMSVHWVINFFVGLLFLRLLE-------QLGPQLLYS  391 (427)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~-------~~g~~~~~~  391 (427)
                      .+.......++..+.+....|... +..|.. ++++|++..++.+....+|..+++.+.+.+..       ..||+..+.
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~a-l~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~  177 (437)
T TIGR00792        99 LVYAYITYILLGLFYSFVNIPYWS-LVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFAL  177 (437)
T ss_pred             HHHHHHHHHHHHHHHHhhcccHhh-CcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHH
Confidence            223333334444444443334333 667765 56889999999998888888888777776664       346777788


Q ss_pred             HHHHHHHHHHHHHHHhccCCC
Q 014286          392 IFGTFCLMAVAFVKRNVVETK  412 (427)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~~  412 (427)
                      +.+++.++..++..+..+|++
T Consensus       178 i~~~l~~~~~~~~~~~~~e~~  198 (437)
T TIGR00792       178 VLALIGVVSLIICFFGTKERY  198 (437)
T ss_pred             HHHHHHHHHHHHHHcCCEecC
Confidence            888777777666655566543

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=98.94  E-value=9e-09  Score=96.64  Aligned_cols=175  Identities=21%  Similarity=0.126  Sum_probs=133.1

Q ss_pred             hHHHHHHHHHHhhhccchhHHHHhHHHHHHhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHH
Q 014286          226 RVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVS  302 (427)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~  302 (427)
                      |...++.++......+.......+.+.+.++++.+..   +...+......+..++.+.+.||+|.|.+.+.|.++..++
T Consensus        45 WvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g  124 (509)
T KOG2504|consen   45 WVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALG  124 (509)
T ss_pred             eeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHH
Confidence            4555555555555555555555666777777776655   5555556666777889999999999999999999999999


Q ss_pred             HHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014286          303 MAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLE  382 (427)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~  382 (427)
                      +++..+..+.+       ...+...++.+.++++...|... .+...|+ ++|+.|.|+......+|.++-|.+...+.+
T Consensus       125 ~~lssF~~~i~-------~l~lt~gvi~G~G~~~~~~paiv-iv~~YF~-kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~  195 (509)
T KOG2504|consen  125 LLLSSFATSLW-------QLYLTFGVIGGLGLGLIYLPAVV-ILGTYFE-KKRALATGIAVSGTGVGTVVFPPLLKYLLS  195 (509)
T ss_pred             HHHHHHHhhHH-------HHHHHHHHHhhccchhhhcchhh-hhhhHhH-HHHHHHHhhhhccCCcceeeHHHHHHHHHH
Confidence            99888876532       23344445566666666666666 6666655 789999999999999999999999999999


Q ss_pred             HhccchhHHHHHHHHHHHHHHHHHhcc
Q 014286          383 QLGPQLLYSIFGTFCLMAVAFVKRNVV  409 (427)
Q Consensus       383 ~~g~~~~~~~~~~~~~~~~~~~~~~~~  409 (427)
                      ..||+..+++.+.+.+-..+......|
T Consensus       196 ~~G~r~~~l~~~~~~l~~~~~~~~~rp  222 (509)
T KOG2504|consen  196 KYGWRGALLIFGGISLNVLVAGALLRP  222 (509)
T ss_pred             HhCcHHHHHHHHHHHHHHHHHHHHcCC
Confidence            999999999999988777666666555

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=98.94  E-value=4.8e-08  Score=90.22  Aligned_cols=309  Identities=15%  Similarity=0.143  Sum_probs=168.5

Q ss_pred             HHHHHHHhhhhhccccccccchhhhhhhccCCCCchhHHHHHHHHH----HHHHHHHHHhHHhhhcccchhHHHHHhhHH
Q 014286           52 HVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMC----LGGAFIGSTLSGWIADGVGRRRAFQLCALP  127 (427)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~----~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~  127 (427)
                      +.....+-.+..++......+..+.....++.+....+ +......    .+...+.++..|.++||+|||..+...++.
T Consensus        23 ~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~-~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~  101 (463)
T KOG2816|consen   23 LEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLEN-GLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVLLLPLFG  101 (463)
T ss_pred             HHHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchh-hhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHH
Confidence            44455555555666665666666666666654433322 3444444    577789999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHhhhcc--ccccceeecccCCchhhhhcCChHHHHHHHHH-----------------
Q 014286          128 MIIGASISATTRNLIGMLLGRFVVGTGMG--LGPTVAALYVTESPHWLYKKGRTAEAEAEFEK-----------------  188 (427)
Q Consensus       128 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~g--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-----------------  188 (427)
                      ..+..+...+.. +|.++    +.|+..+  .......+++++.-    ..+.+......+..                 
T Consensus       102 ~~l~~~~~~~~~-~~~~~----~~~l~g~~~~~~s~~~a~vadis----~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~  172 (463)
T KOG2816|consen  102 TILPALCLLFQG-YWFFL----LLGLSGGFSAIFSVGFAYVADIS----SEEERSSSIGLLSGTFGAGLVIGPALGGYLV  172 (463)
T ss_pred             HHHhHHHHHHHH-HHHhh----hcccccchhhhhhhhhhheeecc----chhHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            888888777766 33333    5555433  33445555666521    11111111111110                 


Q ss_pred             --------------------HhCCCchhhHHHHHhhh----------hcCCCCCcchhHhhhcccchhHHHHHHHHHHh-
Q 014286          189 --------------------LLGGSHVKSSLAELSKL----------DRGDDGDIVKFEELLYGRHFRVVFIGSTLFAL-  237 (427)
Q Consensus       189 --------------------~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  237 (427)
                                          .+.....++...+.++.          ..........++...+.+..+..+.......+ 
T Consensus       173 ~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~l~l~~~~~  252 (463)
T KOG2816|consen  173 KFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSDATLRELTPGSLDSSHVADAFQSLTKVGPDRLLLLLLLVAFLS  252 (463)
T ss_pred             HhcCchHHHHHHHHHHHHHHHHHhhccccccCccccccccccccCCCcccchhhhhhhhhhcccCCCccchHHHHHHHHH
Confidence                                00000111111111110          00000011122222222222222221111111 


Q ss_pred             --hhccchh-HHHHhHHHHHHhcCCChh---HHHHHHHHHHHHHHHhHh-hhhcccCccchhhhhhHHHHHHHHHHHHHh
Q 014286          238 --QQLSGIN-AIFYFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAM-VLMDKLGRKALLQWSFFSMAVSMAIQVAAS  310 (427)
Q Consensus       238 --~~~~~~~-~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g-~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~  310 (427)
                        ....... ...+|.   ....+.+..   ......+....++..+.. .+...++-|+....|...-.+.....++..
T Consensus       253 ~~~~~~~~~~~~~~yl---~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~  329 (463)
T KOG2816|consen  253 SLPEAGGASDVLLLYL---KAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFAT  329 (463)
T ss_pred             HHHHhcCceeEEEEEE---eeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhc
Confidence              1110000 111111   123455555   344555566666666555 777788888888888888888888888765


Q ss_pred             hcCCCCCchhHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014286          311 SSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQ  383 (427)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~  383 (427)
                      ..+        ......  ....+.....|...+..+...+++++|++.++...+..+...++|.+.+.++..
T Consensus       330 ~~w--------~~~~~~--v~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~  392 (463)
T KOG2816|consen  330 ETW--------MMFAAG--VVVALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFAL  392 (463)
T ss_pred             cch--------hhhHHH--HHHHhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHH
Confidence            432        222222  222233345666677888888899999999999999999999999999988654

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.94  E-value=3.9e-08  Score=93.61  Aligned_cols=116  Identities=18%  Similarity=0.262  Sum_probs=100.9

Q ss_pred             HHHHHHHHhhhhhccccccccchhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHhhHHHHH
Q 014286           51 PHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMII  130 (427)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~  130 (427)
                      ..+.++++..+..++..+.+...+..+.+.|+++.++.  |++.+.+-++..+...+..+.+-|.-|-+.+-+|++++++
T Consensus        97 ~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~s--G~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~l  174 (735)
T KOG3626|consen   97 MFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQS--GLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGL  174 (735)
T ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcc--eeEeeecccchhhhhHhHHHhccccCccceeeechhHHHH
Confidence            34666777778888888888899999999999987776  9999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhh-------------------h--------------------------------hH-HHHHHHHHHhhhcccc
Q 014286          131 GASISATTR-------------------N--------------------------------LI-GMLLGRFVVGTGMGLG  158 (427)
Q Consensus       131 ~~~~~~~~~-------------------~--------------------------------~~-~l~~~r~l~G~~~g~~  158 (427)
                      +++++++-+                   +                                ++ .++++.++.|+|....
T Consensus       175 gsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi  254 (735)
T KOG3626|consen  175 GSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPI  254 (735)
T ss_pred             HHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCC
Confidence            999987620                   0                                12 4678899999999999


Q ss_pred             ccceeecccC
Q 014286          159 PTVAALYVTE  168 (427)
Q Consensus       159 ~~~~~~~i~~  168 (427)
                      ++.+..|+.|
T Consensus       255 ~tlGisYiDD  264 (735)
T KOG3626|consen  255 FTLGISYIDD  264 (735)
T ss_pred             ccCCCccccc
Confidence            9999999995

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=98.92  E-value=5.2e-08  Score=89.70  Aligned_cols=149  Identities=14%  Similarity=0.045  Sum_probs=92.6

Q ss_pred             hhHHHHhHHHHHHhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhh-HHHHHHHHHHHHHhhcCCCCCc
Q 014286          243 INAIFYFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSF-FSMAVSMAIQVAASSSYIPGSA  318 (427)
Q Consensus       243 ~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  318 (427)
                      ......++|.+.++.|.+..   .......+...++.++.|++.||+||+....-.. +...+....+...       ..
T Consensus        20 ~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~-------~~   92 (382)
T PRK11128         20 YGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLFAVAFWFG-------AH   92 (382)
T ss_pred             HHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHh-------cc
Confidence            34444556667778888877   4556666777888999999999999843221111 1111111111111       11


Q ss_pred             hhHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Q 014286          319 SLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCL  398 (427)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~  398 (427)
                      +.+...+...+.+.+.+ ...|...++..+.  .++|+.+.+.......+|..++|.+++.+.++.||+..|++.++..+
T Consensus        93 ~~~~l~i~~~l~g~~~~-~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~  169 (382)
T PRK11128         93 SFWLLFVAIGLFNLFFS-PLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVA  169 (382)
T ss_pred             cHHHHHHHHHHHHHHHc-ccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHH
Confidence            22333333333333333 3345555455554  35688889999999999999999999999999999999887776544


Q ss_pred             HHH
Q 014286          399 MAV  401 (427)
Q Consensus       399 ~~~  401 (427)
                      +..
T Consensus       170 ~~~  172 (382)
T PRK11128        170 SML  172 (382)
T ss_pred             HHH
Confidence            443

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=98.90  E-value=3.1e-08  Score=95.18  Aligned_cols=136  Identities=18%  Similarity=0.117  Sum_probs=106.1

Q ss_pred             HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcccchh
Q 014286          263 LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVP  342 (427)
Q Consensus       263 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (427)
                      +...++.++..+|.++.|.++||+|||+++..+.++..++.+..++..+.         ..+...-++.+.+..+...+.
T Consensus       122 ~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~---------~~~~~~Rfl~G~~~~~~~~~~  192 (521)
T KOG0255|consen  122 LGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNY---------WMFLIFRFLSGFFGSGPLTVG  192 (521)
T ss_pred             HHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcH---------HHHHHHHHHHHhhccchhHHh
Confidence            56777888999999999999999999999999999999998887776653         223333333333344555666


Q ss_pred             hhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhccCC
Q 014286          343 SLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVET  411 (427)
Q Consensus       343 ~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (427)
                      ..+..|.+++++|+.+..+ ....+.++.+++...+++..  +|++.+++..+...+..++ ++..+|.
T Consensus       193 ~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~-~~l~~Es  257 (521)
T KOG0255|consen  193 FGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL-WFLPPES  257 (521)
T ss_pred             HhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH-HHccCcC
Confidence            6699999999999999999 88888899999999998887  8888888887777766555 3444453

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=98.89  E-value=1.4e-08  Score=91.73  Aligned_cols=165  Identities=13%  Similarity=0.105  Sum_probs=112.5

Q ss_pred             hhhccchhHHHHhHHHHHH-hcCCChhH---HHHHHHHHHHHHHHhHhhhhcc-cCccchhhhhhHHHHHHHHHHHHHhh
Q 014286          237 LQQLSGINAIFYFSSSVFK-SAGLSSGL---ANVFVGIANLLGSVVAMVLMDK-LGRKALLQWSFFSMAVSMAIQVAASS  311 (427)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~-~~g~~~~~---~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~  311 (427)
                      +.+++....+.+|+.+... .+|++...   ....++...-+..+++||++|| +|+|+.+..+.++.+++.++++....
T Consensus        35 FsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~  114 (498)
T COG3104          35 FSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSV  114 (498)
T ss_pred             HhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhcccc
Confidence            3333334444444433322 23366663   3333333344667889999999 69999999999999999998876530


Q ss_pred             cCCCCCchhHHHHHHHHHHHHHHhhcccchhhhhccCcCCcc--chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Q 014286          312 SYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSR--IRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLL  389 (427)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~  389 (427)
                            .......+.+.+...+.+. .-+....++.|++|++  +|-.+.++.....++|+.++|.+.+++.++.||+..
T Consensus       115 ------~~~~gl~i~L~~I~iG~Gl-~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~g  187 (498)
T COG3104         115 ------SGPGGLYIGLALIIVGTGL-FKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVG  187 (498)
T ss_pred             ------ccccHHHHHHHHHHhcccc-ccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHH
Confidence                  1112344444444444432 3355555899988854  367788888999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhc
Q 014286          390 YSIFGTFCLMAVAFVKRNV  408 (427)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~  408 (427)
                      |...++-..++.+..+...
T Consensus       188 F~~aavGm~~gl~~f~~~~  206 (498)
T COG3104         188 FGLAAVGMIIGLVIFLLGR  206 (498)
T ss_pred             HHHHHHHHHHHHHHHHHcc
Confidence            9988888887776665443

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.85  E-value=8.7e-08  Score=91.63  Aligned_cols=139  Identities=19%  Similarity=0.175  Sum_probs=109.8

Q ss_pred             hHHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcccch
Q 014286          262 GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPV  341 (427)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (427)
                      ++......++..++.++.|+++|++|||+.+..+.+...++.++.....+.        ....++-++.+.+.+......
T Consensus        92 s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~--------~~l~~GR~l~G~g~G~~~~~~  163 (513)
T KOG0254|consen   92 GLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSW--------YQLIVGRILTGLGVGGASVLA  163 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhH--------HHHHHHHHHhccchhhhhhcc
Confidence            477788889999999999999999999999999999999999998887643        356666666666666555444


Q ss_pred             hhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccchhHHHHHHHHHHHHHHHHHhccCC
Q 014286          342 PSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQL--GPQLLYSIFGTFCLMAVAFVKRNVVET  411 (427)
Q Consensus       342 ~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (427)
                      .. +.+|+.|++.||...+..+....+|..++ .+.+...++.  +|+..+.+..+.+++..+. ..+.||+
T Consensus       164 pi-y~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pes  232 (513)
T KOG0254|consen  164 PV-YISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPES  232 (513)
T ss_pred             hh-hHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCC
Confidence            44 99999999999999999999988777777 6666666554  7887777777776666666 5666654

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=98.82  E-value=4e-07  Score=84.14  Aligned_cols=169  Identities=15%  Similarity=0.086  Sum_probs=102.1

Q ss_pred             hhhccchhHHHHhHHHHHHhcCCChhHHHH-----HHHHHHHHHHHhH-hhhhcccCccchhhhhhHHH-HHHHHHHHHH
Q 014286          237 LQQLSGINAIFYFSSSVFKSAGLSSGLANV-----FVGIANLLGSVVA-MVLMDKLGRKALLQWSFFSM-AVSMAIQVAA  309 (427)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~-g~l~d~~g~~~~~~~~~~~~-~~~~~~~~~~  309 (427)
                      +.+...+.....+.|.++++.|.+...+..     ...+..++..++. ++..||+|||+..++...+. ..+...+...
T Consensus        11 ~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~~~   90 (390)
T TIGR02718        11 LSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACLASLALV   90 (390)
T ss_pred             HHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHHHHHHcC
Confidence            334445566667788888999998883332     3355555566665 55789999888865544322 2122222211


Q ss_pred             hhcCCCCCchhHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Q 014286          310 SSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLL  389 (427)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~  389 (427)
                      ..   ......+ ... .......+.....+....+..|..+++.++...+.......+|..+++...+.+.++.||+..
T Consensus        91 ~~---~~~~~~~-~~~-~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~  165 (390)
T TIGR02718        91 GP---DVAGAGW-AVG-LLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPA  165 (390)
T ss_pred             Cc---chhhHHH-HHH-HHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHH
Confidence            10   0111111 122 222222223333445555666777777777777777777788889999888899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhccC
Q 014286          390 YSIFGTFCLMAVAFVKRNVVE  410 (427)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~~  410 (427)
                      |++.+++.++..+..++..++
T Consensus       166 f~~~a~l~~~~~~~~~~~~~~  186 (390)
T TIGR02718       166 FLLVACVPLASLVCVLWLKDR  186 (390)
T ss_pred             HHHHHHHHHHHHHHHHHcCCC
Confidence            999988877766655444433

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.81  E-value=2.3e-07  Score=85.42  Aligned_cols=142  Identities=23%  Similarity=0.184  Sum_probs=97.4

Q ss_pred             HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcccchh
Q 014286          263 LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVP  342 (427)
Q Consensus       263 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (427)
                      .....+.+++++|++..++++||+|||..+.++.++..++.++........     .....++.-++.+...+.......
T Consensus        64 ~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~-----~~e~li~GR~i~Gl~~gl~~~~~p  138 (485)
T KOG0569|consen   64 LIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAP-----SFEMLILGRLIVGLACGLSTGLVP  138 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhh-----hHHHHHHHHHHHHHHhHHHHHHHH
Confidence            355667789999999999999999999999998888888877776655322     223455555555655555544444


Q ss_pred             hhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHH-HH-HHhccchhHHHHHHHHHHHHHHHHHhccCC
Q 014286          343 SLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLR-LL-EQLGPQLLYSIFGTFCLMAVAFVKRNVVET  411 (427)
Q Consensus       343 ~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~-l~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (427)
                      . ++.|+.|++.||....+......+|..++..++.. +. +...|...+....+.+++.. +...+.||.
T Consensus       139 m-yl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l-~~l~~~PES  207 (485)
T KOG0569|consen  139 M-YLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQL-ALLPFLPES  207 (485)
T ss_pred             H-HHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHH-HHHhcCCCC
Confidence            4 99999999999999999888888888888655433 22 12235555544444444443 334556664

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.80  E-value=1.6e-07  Score=79.12  Aligned_cols=163  Identities=14%  Similarity=0.142  Sum_probs=104.5

Q ss_pred             ccchhHHHHhHHHHHHhcCCChhH---HHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCC
Q 014286          240 LSGINAIFYFSSSVFKSAGLSSGL---ANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPG  316 (427)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (427)
                      .+.......|.+.+.+..|++...   +.....++..+ .+..|.+.|++|++.++.++.+...++...+......... 
T Consensus        15 ~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~-   92 (250)
T PF06813_consen   15 SGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIP-   92 (250)
T ss_pred             cCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccC-
Confidence            334566678899999999999884   33444555555 4788999999999999999999999999888776543321 


Q ss_pred             CchhHHHHHHHHHHHHHHhhcc-cchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHH
Q 014286          317 SASLYLSVGGMLMFVLTFALGA-GPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGT  395 (427)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~  395 (427)
                      ..+.|..  ++..+..+.+.++ .........+.+| ++||++.|+.-....+++.+-..+...+.+. +....+.+.+.
T Consensus        93 ~~~~~~~--~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~-~~~~fll~la~  168 (250)
T PF06813_consen   93 SLPVWLM--CLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGD-DPSSFLLFLAV  168 (250)
T ss_pred             ccchHHH--HHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCC-ChHHHHHHHHH
Confidence            1222222  2322333333222 2222223446788 6799999999999999988888887776654 33334444444


Q ss_pred             HHHHHHHHHHHhc
Q 014286          396 FCLMAVAFVKRNV  408 (427)
Q Consensus       396 ~~~~~~~~~~~~~  408 (427)
                      ...+..++...+.
T Consensus       169 ~~~~v~l~~~~~v  181 (250)
T PF06813_consen  169 LPAVVCLVAMFFV  181 (250)
T ss_pred             HHHHHHHHHhhhe
Confidence            4443333333333

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=98.78  E-value=4.5e-08  Score=90.92  Aligned_cols=305  Identities=16%  Similarity=0.163  Sum_probs=153.3

Q ss_pred             chhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhccc---c--hhHHHHHhhHHHHHHHHHHHhh----hhhH
Q 014286           72 EPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV---G--RRRAFQLCALPMIIGASISATT----RNLI  142 (427)
Q Consensus        72 ~~~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~---G--rr~~l~~~~~~~~~~~~~~~~~----~~~~  142 (427)
                      +..|.+++++|++.++.  ..+.+...+...+ -+++|.++|-+   |  ||+-++++.++..++.+..+..    .+..
T Consensus        11 ~~~~~l~~~l~ls~~~~--~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~   87 (433)
T PF03092_consen   11 AIYPFLKDDLGLSPAQL--QRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAA   87 (433)
T ss_pred             HHHHHHHHHcCCCHHHH--HHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhh
Confidence            45678899999977766  5667766666554 58899999986   3  4444566777776666656553    3566


Q ss_pred             HHHHHHHHHhhhccccccceeecccCCchhhhhcCChH--H---H-------HHHHHHHhCCCc-----------hh---
Q 014286          143 GMLLGRFVVGTGMGLGPTVAALYVTESPHWLYKKGRTA--E---A-------EAEFEKLLGGSH-----------VK---  196 (427)
Q Consensus       143 ~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~~~~--~---~-------~~~~~~~~~~~~-----------~~---  196 (427)
                      ...++-++..+|....-..+.+++.|..+    ++...  .   .       ...+........           ..   
T Consensus        88 ~~~~~l~la~~g~a~~DV~aDa~vvE~~~----~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~  163 (433)
T PF03092_consen   88 IAVVLLFLASFGYAFADVAADALVVELAR----REPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAAL  163 (433)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHHHhh----cCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHH
Confidence            66677788888888888888877776321    11111  0   0       001111111000           00   


Q ss_pred             ------h---HHHHHhhhh--c----CCC--C--------CcchhHhhhcccchhHHHH-HHHHHHhhhccchhHHHHhH
Q 014286          197 ------S---SLAELSKLD--R----GDD--G--------DIVKFEELLYGRHFRVVFI-GSTLFALQQLSGINAIFYFS  250 (427)
Q Consensus       197 ------~---~~~~~~~~~--~----~~~--~--------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  250 (427)
                            .   ..++.++.+  +    .++  +        .....++.++.+..+...+ ..++.............++.
T Consensus       164 ~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~fy~~  243 (433)
T PF03092_consen  164 PLLMLIVALFLLEERKVRPADEVFSFGKEEVPCLFGSFREQLSELWRALQQRAIWQPILFFIFFFNLPPSISSASSFYFQ  243 (433)
T ss_pred             HHHHHHHHHHhhhhccccccchhhcccccccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccEEEEE
Confidence                  0   000000000  0    000  0        0011222333333333222 11111111111001011111


Q ss_pred             HHHHHhcCCChhH---HHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhc---CCCCCchhHHHH
Q 014286          251 SSVFKSAGLSSGL---ANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSS---YIPGSASLYLSV  324 (427)
Q Consensus       251 ~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~  324 (427)
                      .+..+..++++..   ...+..++.++|..+..+...+..-|+++....++..+..+.-......   ...-.+. +..+
T Consensus       244 ~~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~-~f~l  322 (433)
T PF03092_consen  244 TDALGGPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQ-WFAL  322 (433)
T ss_pred             eccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCe-EEEE
Confidence            1111112255553   3344445555565555555555555666555554443332221111000   0000111 2222


Q ss_pred             HHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 014286          325 GGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLG  385 (427)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g  385 (427)
                      .--.+......+.+.|... ..+|++|+..-|+..++..++.++|..++..+...+.+..|
T Consensus       323 gd~~l~~~~~~i~~mP~lv-l~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~  382 (433)
T PF03092_consen  323 GDTILEEVIGMIAFMPSLV-LAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFG  382 (433)
T ss_pred             EhHHHHHHHHHHHHHHHHH-HHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            2233334444445556666 88999999999999999999999999999999999888776

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=98.78  E-value=1.7e-08  Score=68.32  Aligned_cols=81  Identities=17%  Similarity=0.153  Sum_probs=73.2

Q ss_pred             hccccccccchhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHhhHHHHHHHHHHHhhhhhH
Q 014286           63 FGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLI  142 (427)
Q Consensus        63 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~  142 (427)
                      .++.+..+.|.+|.+++|.++|.++.  |++.+...+||.+|.+...++.++..+++.+..+++...+..+.+++.++++
T Consensus         4 mGigRFayTplLP~M~~~~~ls~~~a--g~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~   81 (85)
T PF06779_consen    4 MGIGRFAYTPLLPLMQADGGLSLSQA--GWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFW   81 (85)
T ss_pred             hhhHHHHHHhHhHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchH
Confidence            35566778999999999999987777  9999999999999999999999999999999999999999999999998877


Q ss_pred             HHH
Q 014286          143 GML  145 (427)
Q Consensus       143 ~l~  145 (427)
                      ...
T Consensus        82 ~w~   84 (85)
T PF06779_consen   82 LWS   84 (85)
T ss_pred             HHh
Confidence            653

Note that many members are hypothetical proteins.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.74  E-value=6.5e-07  Score=78.78  Aligned_cols=155  Identities=16%  Similarity=0.067  Sum_probs=109.0

Q ss_pred             HHHHhHHHHHHhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhH
Q 014286          245 AIFYFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLY  321 (427)
Q Consensus       245 ~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (427)
                      ......|.+.+.++.+..   +....+..+..++++..+++.+|+|+|+-+..+..+++++..++.-.....     ...
T Consensus        31 l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~-----~y~  105 (422)
T COG0738          31 LNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSK-----SYG  105 (422)
T ss_pred             cchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhh-----hHH
Confidence            334456677677776655   667777788889999999999999999999999999999998876444321     112


Q ss_pred             HHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH------------------
Q 014286          322 LSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQ------------------  383 (427)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~------------------  383 (427)
                      ..+..+++.+.+.+.- -.....++....|++....-+.+.+.+..+|++++|.+++.+..+                  
T Consensus       106 ~FL~~lFila~Gi~~L-etaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~  184 (422)
T COG0738         106 FFLVALFILASGIGLL-ETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGAD  184 (422)
T ss_pred             HHHHHHHHHHhhhHHH-HhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHH
Confidence            2233333333333322 223333777888887778889999999999999999999998872                  


Q ss_pred             -hccchhHHHHHHHHHHHHHHHH
Q 014286          384 -LGPQLLYSIFGTFCLMAVAFVK  405 (427)
Q Consensus       384 -~g~~~~~~~~~~~~~~~~~~~~  405 (427)
                       ..++.+|...+...++..+...
T Consensus       185 ~~~v~~pYl~~~~~lvll~v~~~  207 (422)
T COG0738         185 ASSVQFPYLILAGLLVLLAVLIL  207 (422)
T ss_pred             HHhhhhHHHHHHHHHHHHHHHHH
Confidence             1266777777776666555443

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.71  E-value=3e-06  Score=77.47  Aligned_cols=75  Identities=15%  Similarity=0.004  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHHHHhHHhhhcccchhHHHHHhhHHHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccceeecccCC
Q 014286           94 VSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTES  169 (427)
Q Consensus        94 ~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~  169 (427)
                      .++-...+.++.++.+.+.|+.|.|+.++++...+....+.+-+ +|-+.++++-.+.|+|.+..+..-..|+.|.
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~-~N~y~~yfssallG~Gaallw~GqG~ylt~~  130 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF-PNSYYLYFSSALLGFGAALLWTGQGGYLTSN  130 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh-cchHHHHHHHHHhhhhHHheecccceehhhc
Confidence            66677788899999999999999999999999999888777766 4567788899999999999998888888863

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.70  E-value=1.9e-07  Score=86.96  Aligned_cols=141  Identities=16%  Similarity=0.093  Sum_probs=104.8

Q ss_pred             HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcccchh
Q 014286          263 LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVP  342 (427)
Q Consensus       263 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (427)
                      ....++.++.+++.+.++.+.||++..+.+....++..+..++.....+.        +..++.-++.+...+.+ .|..
T Consensus        85 ~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~--------~~~ialr~llGl~es~~-wP~~  155 (495)
T KOG2533|consen   85 VLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSF--------PGLIALRFLLGLFESGG-WPGV  155 (495)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhh--------HHHHHHHHHHHHHhccc-chHH
Confidence            67788889999999999999999995555544444443333333322221        23444455555555554 4555


Q ss_pred             hhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHH------HhccchhHHHHHHHHHHHHHHHHHhccCCC
Q 014286          343 SLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLE------QLGPQLLYSIFGTFCLMAVAFVKRNVVETK  412 (427)
Q Consensus       343 ~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (427)
                      ..++...+.+++||.-+|+.++...+|+++|+.++..+..      ..||++.|++-+++.+...++.++++|+..
T Consensus       156 ~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P  231 (495)
T KOG2533|consen  156 VAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNP  231 (495)
T ss_pred             HHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCCh
Confidence            5599999999999999999999999999999999888643      467999999999999999988888887643

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.67  E-value=2.1e-08  Score=82.53  Aligned_cols=325  Identities=17%  Similarity=0.224  Sum_probs=167.5

Q ss_pred             ccchhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHhhHHHHHHHHHHHhhhhhHHHHHHHH
Q 014286           70 VNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRF  149 (427)
Q Consensus        70 ~~~~~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~  149 (427)
                      -+|.+-.+-+.++....+.  |.+.-..+-...+...+.|.++|+-|||+.-+.-++.+.++++ .-.++.|..++++|.
T Consensus        56 QgPYvYyLYstYgFgkG~I--gqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCi-TKhSpqYkVLmVGR~  132 (454)
T KOG4332|consen   56 QGPYVYYLYSTYGFGKGDI--GQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCI-TKHSPQYKVLMVGRV  132 (454)
T ss_pred             cCceeeeeehhcCccCCcc--ceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHH-hhcCCceEEEeehhh
Confidence            3566666667778766666  7766666666778888999999999999977666666655443 445788999999999


Q ss_pred             HHhhhccccccceee-cccCCc-------hhhhhcCCh-----HHHHHHHHHHhC--------CCchh---h--H-----
Q 014286          150 VVGTGMGLGPTVAAL-YVTESP-------HWLYKKGRT-----AEAEAEFEKLLG--------GSHVK---S--S-----  198 (427)
Q Consensus       150 l~G~~~g~~~~~~~~-~i~~~~-------~~~~~~~~~-----~~~~~~~~~~~~--------~~~~~---~--~-----  198 (427)
                      +-|+..+..+..--+ ++.|.-       .|+...-..     .....++..+.+        ...+.   .  .     
T Consensus       133 LGGiaTsLLFSaFEsWliaEHnekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLaig  212 (454)
T KOG4332|consen  133 LGGIATSLLFSAFESWLIAEHNEKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLAIG  212 (454)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhhhccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHH
Confidence            999998877765443 333321       121110000     000111111111        00000   0  0     


Q ss_pred             HHHHhhhhcCCCCCcchhHh-----------hhcccchhHHHHHHHHHHhhhccchhHHHHhHHHHH-HhcCCChhHHHH
Q 014286          199 LAELSKLDRGDDGDIVKFEE-----------LLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVF-KSAGLSSGLANV  266 (427)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~  266 (427)
                      ...+...-.++-.++..-++           +..++  +..++ ..+........+.....|.|.+- ++.+.+.+.++.
T Consensus       213 mAvil~~W~ENygdps~~kdlltqf~gaa~aiaSD~--ki~LL-G~iqsLFE~smytFVFLWTPaLspn~e~iPhGfiFa  289 (454)
T KOG4332|consen  213 MAVILSSWSENYGDPSENKDLLTQFKGAARAIASDE--KIALL-GAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFA  289 (454)
T ss_pred             HHHHHhhhhhccCChhhhHHHHHHhhHhHHHHhcch--HHHHH-HHHHHHHhhhhheeeeeecccCCCCcccCCchhHHH
Confidence            00000000000011111111           22222  12222 22223333333444444555432 234555557777


Q ss_pred             HHHHHHHHHHHhHhhhhcccCc--cchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcccchhhh
Q 014286          267 FVGIANLLGSVVAMVLMDKLGR--KALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSL  344 (427)
Q Consensus       267 ~~~~~~~~~~~~~g~l~d~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (427)
                      -+.+..++|+-+..++..|-..  ...+.+.+.+.++.+.+...... ..+....+...+++++++-...+..+.++.. 
T Consensus       290 tFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~-vsP~kes~~~s~i~F~~~E~cvGlfwPSimk-  367 (454)
T KOG4332|consen  290 TFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSS-VSPSKESPSESLIGFCLFEACVGLFWPSIMK-  367 (454)
T ss_pred             HHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhc-cCCCcCCchHHHHHHHHHHHHHhhcchHHHH-
Confidence            7788888888887777665433  34555555555555444333332 2233444555566666666666665555555 


Q ss_pred             hccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHH--HhccchhHHHHHHHHHHHHHHH
Q 014286          345 LLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLE--QLGPQLLYSIFGTFCLMAVAFV  404 (427)
Q Consensus       345 ~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~--~~g~~~~~~~~~~~~~~~~~~~  404 (427)
                      +-.+..|.+.|++.+-.+..--++-..++-..  .-.+  ..+-+..|-++.+...++.+..
T Consensus       368 mRsqyIPEearstimNfFRvPLnifvClvLyn--lh~~~~p~~tr~mf~icS~~~~~a~i~~  427 (454)
T KOG4332|consen  368 MRSQYIPEEARSTIMNFFRVPLNIFVCLVLYN--LHVDAFPTTTRNMFGICSAFLFVASILQ  427 (454)
T ss_pred             HHHhhCCHHHHhhhhhheechhhHhhhhhhee--cccccCccccchhhhhhHHHHHHHHHHH
Confidence            78888899888776555443333222211110  0011  1234566777776666654443

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.64  E-value=2.4e-07  Score=86.63  Aligned_cols=162  Identities=18%  Similarity=0.199  Sum_probs=105.3

Q ss_pred             HhHHHHHHhcCCChhHHHHHHH---HHHHHHHHhHhhhhc----ccCccch-hhhhhHHHHHHHHHHHHHhhcCCCCCch
Q 014286          248 YFSSSVFKSAGLSSGLANVFVG---IANLLGSVVAMVLMD----KLGRKAL-LQWSFFSMAVSMAIQVAASSSYIPGSAS  319 (427)
Q Consensus       248 ~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~g~l~d----~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (427)
                      +..+++.+..|.++.....+..   +...+..++.|.++|    |+|||+. +..+....++++.++.............
T Consensus        23 ~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~  102 (428)
T PF13347_consen   23 YLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAK  102 (428)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhH
Confidence            4455666777999885555544   445556668999999    7886655 5567777777777666441111111112


Q ss_pred             hHHHHHHHHHHHHHHhhcccchhhhhccCcCC-ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------cchhHH
Q 014286          320 LYLSVGGMLMFVLTFALGAGPVPSLLLPEIFP-SRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLG-------PQLLYS  391 (427)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-------~~~~~~  391 (427)
                      .....+...++..++.....|... +..|..+ +++|.+..+.-.....+|..+...+.+.+.+..|       |.....
T Consensus       103 ~~~~~~~~~l~~~~~t~~~i~~~a-l~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~  181 (428)
T PF13347_consen  103 LVWLFVFYILFDIAYTFVQIPYNA-LIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMAL  181 (428)
T ss_pred             HHHHHHHHHHHHHhhhhccCchhh-cCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHH
Confidence            223344445555555555455544 8888877 4689999999989888888877777777765443       566666


Q ss_pred             HHHHHHHHHHHHHHHhccC
Q 014286          392 IFGTFCLMAVAFVKRNVVE  410 (427)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~  410 (427)
                      +.+++.++..++..+..+|
T Consensus       182 v~~iv~~v~~~i~~~~~ke  200 (428)
T PF13347_consen  182 VLAIVGLVFFLITFFFVKE  200 (428)
T ss_pred             HHHHHHHHHhhhhhheeee
Confidence            6777777776676666676

>PRK09669 putative symporter YagG; Provisional

Probab=98.62  E-value=1e-06  Score=82.85  Aligned_cols=161  Identities=14%  Similarity=0.177  Sum_probs=96.2

Q ss_pred             HhHHHHHHhcCCChhH---HHHHHHHHHHHHHHhHhhhhcc----cCccc-hhhhhhHHHHHHHHHHHHHhhcCCCCCch
Q 014286          248 YFSSSVFKSAGLSSGL---ANVFVGIANLLGSVVAMVLMDK----LGRKA-LLQWSFFSMAVSMAIQVAASSSYIPGSAS  319 (427)
Q Consensus       248 ~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~g~l~d~----~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (427)
                      +...++.+..|.++..   ...+..+...+..++.|+++||    +|||+ .+..+.+..+++..++...+..  .....
T Consensus        31 ~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~--~~~~~  108 (444)
T PRK09669         31 FLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDF--GATGK  108 (444)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCC--CcchH
Confidence            3344555678998874   4444455666788899999998    66644 4555666666665544433321  11222


Q ss_pred             hHHHHHHHHHHHHHHhhcccchhhhhccCcC-CccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh-------ccchhHH
Q 014286          320 LYLSVGGMLMFVLTFALGAGPVPSLLLPEIF-PSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQL-------GPQLLYS  391 (427)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~-------g~~~~~~  391 (427)
                      .+...+...++..++.....|.. ++..|.. ++++|++..+.......+|+.+++.+...+....       ||...+.
T Consensus       109 ~~~~~~~~~l~~~~~t~~~ip~~-al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~  187 (444)
T PRK09669        109 IIYACVTYILLSLVYTAINVPYC-AMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMM  187 (444)
T ss_pred             HHHHHHHHHHHHHHHHhhcchHH-HhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHH
Confidence            23333333444444544334443 4777765 4577999889888888888888887666555433       4555566


Q ss_pred             HHHHHHHHHHHHHHHhccCC
Q 014286          392 IFGTFCLMAVAFVKRNVVET  411 (427)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~  411 (427)
                      +.+++.++..++.++..+|+
T Consensus       188 i~~ii~~v~~~~~~~~~~e~  207 (444)
T PRK09669        188 VMGLLGVVLFFCCFFMTKER  207 (444)
T ss_pred             HHHHHHHHHHHHHhCCeEEe
Confidence            66666655555554444443

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.61  E-value=1.2e-06  Score=82.92  Aligned_cols=160  Identities=18%  Similarity=0.232  Sum_probs=91.4

Q ss_pred             hHHHHHHhcCCChhHH---HHHHHHHHHHHHHhHhhhhc----ccCc-cchhhhhhHHHHHHHHHHHHHhhcCCCCCchh
Q 014286          249 FSSSVFKSAGLSSGLA---NVFVGIANLLGSVVAMVLMD----KLGR-KALLQWSFFSMAVSMAIQVAASSSYIPGSASL  320 (427)
Q Consensus       249 ~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~g~l~d----~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (427)
                      ...++.+..|.++...   ..+.-+...+..++.|+++|    |+|| |+.+..+....++++.++...+..  ......
T Consensus        29 l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~--~~~~~~  106 (473)
T PRK10429         29 LMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLF--EGTAQY  106 (473)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCC--CccHHH
Confidence            3444555679988744   44445566677888999999    5587 455556666666665555332211  111112


Q ss_pred             HHHHHHHHHHHHHHhhcccchhhhhccCcC-CccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh-------ccchhHHH
Q 014286          321 YLSVGGMLMFVLTFALGAGPVPSLLLPEIF-PSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQL-------GPQLLYSI  392 (427)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~-------g~~~~~~~  392 (427)
                      +...+...++..++.....|... +..|+. ++++|.+..+.-....++|+.+.+.+...+.+..       |+.....+
T Consensus       107 ~~~~~~~~l~~~~~t~~~ip~~a-l~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i  185 (473)
T PRK10429        107 VFVCVTYILWGMTYTIMDIPFWS-LVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLV  185 (473)
T ss_pred             HHHHHHHHHHHHHHHHHcchHHh-hhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHH
Confidence            22333333444455444444444 777876 5788999888877777777777766655544333       23444444


Q ss_pred             HHHHHHHHHHHHHHhccCC
Q 014286          393 FGTFCLMAVAFVKRNVVET  411 (427)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~  411 (427)
                      .+++.++..++.++..+|+
T Consensus       186 ~~~~~~~~~~~~~~~~~e~  204 (473)
T PRK10429        186 LIAFFIVSTIITLRNVHEV  204 (473)
T ss_pred             HHHHHHHHHHHHHcCceec
Confidence            5555454444554445554

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=98.60  E-value=1.9e-06  Score=79.79  Aligned_cols=136  Identities=17%  Similarity=0.164  Sum_probs=105.3

Q ss_pred             HHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcccchhhhhcc
Q 014286          268 VGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLP  347 (427)
Q Consensus       268 ~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (427)
                      .++..++.++..|.++|++|||..+....+...+....+.+..          |+.++ ..-..+++. .......++++
T Consensus        71 ~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~----------~~~~~-~~~l~g~~~-~~~s~~~a~va  138 (463)
T KOG2816|consen   71 AGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG----------YWFFL-LLGLSGGFS-AIFSVGFAYVA  138 (463)
T ss_pred             hHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH----------HHHhh-hcccccchh-hhhhhhhhhee
Confidence            3667778889999999999999999888877777766665543          12222 111222222 22344455899


Q ss_pred             CcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhccCCCCCC
Q 014286          348 EIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKS  415 (427)
Q Consensus       348 ~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  415 (427)
                      |....+.|....|+.+.....+..++|.+.+.+....|+..++.+.++..++..+......||+..++
T Consensus       139 dis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~  206 (463)
T KOG2816|consen  139 DISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEK  206 (463)
T ss_pred             eccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcc
Confidence            99999999999999999999999999999999999999999999999999888888888888875444

>TIGR00788 fbt folate/biopterin transporter

Probab=98.50  E-value=2.5e-06  Score=80.48  Aligned_cols=154  Identities=17%  Similarity=0.126  Sum_probs=90.6

Q ss_pred             hHHHHHHhcCCChhHHHHHHHHHHHH--HHHhHhhhhcccC-----ccchhhhhhHHHH-HHHHHHHHHhhcCCCCCchh
Q 014286          249 FSSSVFKSAGLSSGLANVFVGIANLL--GSVVAMVLMDKLG-----RKALLQWSFFSMA-VSMAIQVAASSSYIPGSASL  320 (427)
Q Consensus       249 ~~~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~g~l~d~~g-----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  320 (427)
                      ..+.+.++.|.+........++..++  ..++.|.++||++     ||+.+.++.++.. ++...+..       .+...
T Consensus        48 ~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~-------~~~~~  120 (468)
T TIGR00788        48 LSPMLTDDLGLDGARYQRLVGLSSLGWALKPFAGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPG-------KVSSA  120 (468)
T ss_pred             hhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhccc-------ccchH
Confidence            34455556799988554444443332  2456999999996     6666666655542 22221111       11111


Q ss_pred             HHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhh---HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Q 014286          321 YLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAK---AMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFC  397 (427)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~---~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~  397 (427)
                      ........+..++.+ ........+..|..+ +.+..   ..+......++|..+++.+.|.+.+..+|+..|.+.+++.
T Consensus       121 ~~~~~~~~l~~~~~a-~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~  198 (468)
T TIGR00788       121 KVAAAFIFLAALAKA-LYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALL  198 (468)
T ss_pred             HHHHHHHHHHHHHHH-HHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHH
Confidence            122222222332222 223455668888877 44444   3344444456899999999999999999999998888887


Q ss_pred             HHHHHHHHHhccCCC
Q 014286          398 LMAVAFVKRNVVETK  412 (427)
Q Consensus       398 ~~~~~~~~~~~~~~~  412 (427)
                      ++.. +...+.+|.+
T Consensus       199 ll~~-~~~~~~~E~~  212 (468)
T TIGR00788       199 LLQL-FVSNLSKERR  212 (468)
T ss_pred             HHHH-HHHHhccccc
Confidence            7763 3345566643

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.45  E-value=2.1e-07  Score=83.88  Aligned_cols=174  Identities=15%  Similarity=0.106  Sum_probs=88.9

Q ss_pred             cccchhHHHHHHHHHHhhhccchhHHHHhHHHHHHhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhH
Q 014286          221 YGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFF  297 (427)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~  297 (427)
                      |+++++......+.+++.   .....+++...+.+..|++..   .+.....+..++.+++.|.++||.|.||-++....
T Consensus         5 ~~~~~~~~s~~~f~~Ff~---~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~   81 (412)
T PF01306_consen    5 KNKNYWWLSLFYFFYFFI---WGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIA   81 (412)
T ss_dssp             HSHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHH
T ss_pred             cCchHHHHHHHHHHHHHH---HHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHH
Confidence            344555544444444432   223344444444455788877   45555666777888999999999996665443322


Q ss_pred             HHHH--H-HHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhccc---chhhhhccCcCCccchhhHHHHHHHHHHHHHH
Q 014286          298 SMAV--S-MAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAG---PVPSLLLPEIFPSRIRAKAMAVCMSVHWVINF  371 (427)
Q Consensus       298 ~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~  371 (427)
                      ...+  + +....+.+...    .+   .....++.+...+..+.   |+.-+++.+. . +..+--.|=....+++|.+
T Consensus        82 ~l~~l~~pff~~v~~pll~----~n---~~lg~iig~i~l~~~f~~~~~~~Ea~~er~-s-r~~~feYG~~R~wGSig~a  152 (412)
T PF01306_consen   82 ILLLLFGPFFIYVFGPLLQ----SN---FWLGAIIGGIYLGLVFNAGVPLSEAYAERV-S-RRNGFEYGRARMWGSIGFA  152 (412)
T ss_dssp             HHHHTCHHHHHHTHHHHHH----TT----HHHHHHTTTTTTTTTTTHHHHHHHHHHHH-H-HHHSS-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH----HH---HHHHHHHHHHHHHHHHcccchHHHHHHHHH-H-HHhcCCcchHHHHhhHHHH
Confidence            2211  1 11111111110    00   11112222222232222   3333233222 2 3456667788889999999


Q ss_pred             HHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHh
Q 014286          372 FVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRN  407 (427)
Q Consensus       372 ~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  407 (427)
                      ++..++|.+.+ .+....|++..+..++..++....
T Consensus       153 i~s~~~G~L~~-i~p~~~fwi~s~~~~il~lll~~~  187 (412)
T PF01306_consen  153 IASLLAGILFN-INPNIIFWIASAAAIILLLLLLLL  187 (412)
T ss_dssp             HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             HHHHHhheeee-eCccHHHHHHHHHHHHHHHHHHHc
Confidence            99999999998 455567776655544444444333

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=98.45  E-value=3.9e-05  Score=69.11  Aligned_cols=105  Identities=13%  Similarity=0.045  Sum_probs=79.7

Q ss_pred             HHHHHHhhhhhccccccccchhhhhhhc-cCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHhhHHHHHH
Q 014286           53 VLVATLSSFLFGYHLGVVNEPLESISLD-LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIG  131 (427)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~  131 (427)
                      ...+|+-.|+..+.-+ -....|.+.+. .|++.++.. .-+.-...-.+....++...+.|..|.|++++++.+...+.
T Consensus         7 ~~llc~~gf~~~frPs-EPfl~~yL~~~~kn~T~~qv~-~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t   84 (412)
T PF01770_consen    7 TLLLCLFGFFKEFRPS-EPFLTPYLTGPDKNFTEEQVN-NEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIIT   84 (412)
T ss_pred             HHHHHHHHHHHhcCCC-CccchHHHcCCccCCCHHHHH-HhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            4455555555444321 12234455554 688766664 55666777788889999999999999999999999999999


Q ss_pred             HHHHHhhhhhHHHHHHHHHHhhhccccc
Q 014286          132 ASISATTRNLIGMLLGRFVVGTGMGLGP  159 (427)
Q Consensus       132 ~~~~~~~~~~~~l~~~r~l~G~~~g~~~  159 (427)
                      .++..+.++...+-+.-++.|++.+...
T Consensus        85 ~~lll~~~sv~~mq~~q~~yg~~~a~ev  112 (412)
T PF01770_consen   85 WLLLLFGTSVLAMQLMQFFYGLATAAEV  112 (412)
T ss_pred             HHHHHHHCcHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999887643

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.44  E-value=1.2e-05  Score=69.87  Aligned_cols=168  Identities=18%  Similarity=0.152  Sum_probs=123.5

Q ss_pred             HHHHHHHHHhhhccchhHHHHhHHHHHHhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHH
Q 014286          228 VFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMA  304 (427)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~  304 (427)
                      .+....+..+.-=...+...-.++.+.+++|.+..   +...+..++..+.+++..++.+|+|.++.+..+.++.+++..
T Consensus        13 li~gIvlia~NLR~~itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~   92 (395)
T COG2807          13 LLAGIVLIAFNLRPAITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGIL   92 (395)
T ss_pred             HHHHHHHHHhccchhhhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            33344444444334455556667788889999877   566677777778889999999999999999888888877766


Q ss_pred             HHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014286          305 IQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQL  384 (427)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~  384 (427)
                      +=....         .+..+....+.+.+.+.+..-++. .+.+.+| ++-+..+|++.+...+++++++.+.-.+.++.
T Consensus        93 iR~~~~---------~~~L~~gt~l~G~gIav~nVLLPs-lIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~lavpla~~~  161 (395)
T COG2807          93 IRSLGG---------LPLLFLGTLLAGAGIAVINVLLPS-LIKRDFP-KRVGLMTGLYSTSLGAGAALAAALAVPLAQHS  161 (395)
T ss_pred             HHhccc---------HHHHHHHHHHHHhhHHHHHHhhhH-HHHhhcc-cchhhHHhHHHHHHHHHHHHHhhhhhHHHHhh
Confidence            543321         234555555666666555444444 8888898 56899999999999999999999999999888


Q ss_pred             -ccchhHHHHHHHHHHHHHHHHH
Q 014286          385 -GPQLLYSIFGTFCLMAVAFVKR  406 (427)
Q Consensus       385 -g~~~~~~~~~~~~~~~~~~~~~  406 (427)
                       ||+....+.+..++++.++.+.
T Consensus       162 ~gW~~aL~~WAl~allAl~~WlP  184 (395)
T COG2807         162 GGWRGALGFWALLALLALLIWLP  184 (395)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhh
Confidence             6999888888888777665543

>PRK11462 putative transporter; Provisional

Probab=98.43  E-value=1.1e-05  Score=76.02  Aligned_cols=159  Identities=11%  Similarity=0.119  Sum_probs=96.9

Q ss_pred             HHHHHHhcCCChhHHHHHH---HHHHHHHHHhHhhhhcc----cCccch-hhhhhHHHHHHHHHHHHHhhcCCCCCchhH
Q 014286          250 SSSVFKSAGLSSGLANVFV---GIANLLGSVVAMVLMDK----LGRKAL-LQWSFFSMAVSMAIQVAASSSYIPGSASLY  321 (427)
Q Consensus       250 ~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~~g~l~d~----~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (427)
                      ..++.+..|+++.....+.   -+...+.-++.|+++||    +|||+. +.++.+..+++..++...+..  .......
T Consensus        33 ~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~--s~~~~~~  110 (460)
T PRK11462         33 MFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDL--SMNGKMI  110 (460)
T ss_pred             HHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCC--CcchHHH
Confidence            3444566799888544444   45556778899999996    576554 455666777766555443321  1112122


Q ss_pred             HHHHHHHHHHHHHhhcccchhhhhccCcCC-ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------cchhHHHH
Q 014286          322 LSVGGMLMFVLTFALGAGPVPSLLLPEIFP-SRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLG-------PQLLYSIF  393 (427)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-------~~~~~~~~  393 (427)
                      ...+...++..++.....|... +..|..+ +++|++..+.-.....+|..+++.+...+.+..|       |.....++
T Consensus       111 y~~~~~~~~~~~~t~~~ipy~a-l~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~  189 (460)
T PRK11462        111 YAAITYTLLTLLYTVVNIPYCA-LGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVL  189 (460)
T ss_pred             HHHHHHHHHHHHHHHHhccHHH-HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHH
Confidence            3333444445555544445444 6666655 6889999999999999998888888776666543       44444555


Q ss_pred             HHHHHHHHHHHHHhccCC
Q 014286          394 GTFCLMAVAFVKRNVVET  411 (427)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~  411 (427)
                      +++.+++..+.+...+|+
T Consensus       190 ~ii~~i~~~i~~~~~kE~  207 (460)
T PRK11462        190 SVVAFMMLAFCFFTTKER  207 (460)
T ss_pred             HHHHHHHHHHHHhcceec
Confidence            555555554554444554

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.43  E-value=1.6e-05  Score=77.22  Aligned_cols=159  Identities=13%  Similarity=0.148  Sum_probs=101.6

Q ss_pred             HHhHHHHHHhcCCChhHHHHH---HHHHHHHHHHhHhhhhcc-cCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHH
Q 014286          247 FYFSSSVFKSAGLSSGLANVF---VGIANLLGSVVAMVLMDK-LGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYL  322 (427)
Q Consensus       247 ~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (427)
                      ..+..++.+..+.+......+   +....-+..+++|+++|+ +|+++.+.++.++..++..++.+..............
T Consensus         8 aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~   87 (654)
T TIGR00926         8 TILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLL   87 (654)
T ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHH
Confidence            334445555677776633333   333344566788999997 6999999999999888887776533211111111122


Q ss_pred             HHHHHHHHHHHHhhcccchhhhhccCcCCcc---chhhHHHHHHHHHHHHHHHHHHHHHHHHHHh-------ccchhHHH
Q 014286          323 SVGGMLMFVLTFALGAGPVPSLLLPEIFPSR---IRAKAMAVCMSVHWVINFFVGLLFLRLLEQL-------GPQLLYSI  392 (427)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~-------g~~~~~~~  392 (427)
                      .++++.+..++.+ +.-|...+...|.++++   .+-+...++....++|+.+++.+.+++.+..       +|...|.+
T Consensus        88 ~l~gLaLia~G~G-giKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i  166 (654)
T TIGR00926        88 DLLGLALIALGTG-GIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGV  166 (654)
T ss_pred             HHHHHHHHHhhcc-ccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHH
Confidence            3333444333333 23355555777777643   3677888888999999999999999887553       57778888


Q ss_pred             HHHHHHHHHHHHHH
Q 014286          393 FGTFCLMAVAFVKR  406 (427)
Q Consensus       393 ~~~~~~~~~~~~~~  406 (427)
                      .+++.+++.++...
T Consensus       167 ~~i~m~ia~lvf~~  180 (654)
T TIGR00926       167 PAILMILALIVFMA  180 (654)
T ss_pred             HHHHHHHHHHHHHH
Confidence            88777777665543

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=98.39  E-value=1.8e-07  Score=72.52  Aligned_cols=75  Identities=21%  Similarity=0.399  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHHHHhHHhhhcccchhHHHHHhhHHHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccceeecccC
Q 014286           94 VSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTE  168 (427)
Q Consensus        94 ~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~  168 (427)
                      .+.+.++..+++++.|++.||+|||+.+..+..+..++.++..+.++++.+.+.+++.|++.+...+....++.|
T Consensus         4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~   78 (141)
T TIGR00880         4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIAD   78 (141)
T ss_pred             EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            345678888999999999999999999999999999999999999999999999999999998877776666665

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=98.32  E-value=4.6e-05  Score=66.78  Aligned_cols=155  Identities=15%  Similarity=0.117  Sum_probs=92.9

Q ss_pred             HHHHHHhcCCChhH---HHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHH
Q 014286          250 SSSVFKSAGLSSGL---ANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGG  326 (427)
Q Consensus       250 ~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (427)
                      .-.+++++|++...   .+........+...+.|.++||+|||+..+..+++..++.+.--.         ...+.+++.
T Consensus        57 ~Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~---------~~~~~L~~G  127 (354)
T PF05631_consen   57 LYALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHS---------SNYPVLLLG  127 (354)
T ss_pred             hHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhc---------cccHHHHHH
Confidence            33455678998773   444444556677778899999999999888877777776653321         112344444


Q ss_pred             HHHHHHHHhhcccch-hhhhccCc----CCccchhhHHHHHHHHH-HHHHHHHHHHHHHHHHHhc--cchhHHHHHHHHH
Q 014286          327 MLMFVLTFALGAGPV-PSLLLPEI----FPSRIRAKAMAVCMSVH-WVINFFVGLLFLRLLEQLG--PQLLYSIFGTFCL  398 (427)
Q Consensus       327 ~~~~~~~~~~~~~~~-~~~~~~~~----~p~~~~g~~~g~~~~~~-~~g~~~~~~~~g~l~~~~g--~~~~~~~~~~~~~  398 (427)
                      -++.+..-+.....- .| ++.|.    +|++..+...+...... .+-.+++..++..+.+..|  ...+|.....+.+
T Consensus       128 RvlgGiaTSLLfS~FEsW-~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~  206 (354)
T PF05631_consen  128 RVLGGIATSLLFSAFESW-MVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLA  206 (354)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHH
Confidence            444444433332211 12 44443    45555555555554333 3445555566666677665  4778888888888


Q ss_pred             HHHHHHHHhccCCCCC
Q 014286          399 MAVAFVKRNVVETKGK  414 (427)
Q Consensus       399 ~~~~~~~~~~~~~~~~  414 (427)
                      ++.++.....+|..+.
T Consensus       207 ~~~~~I~~~W~ENyg~  222 (354)
T PF05631_consen  207 VAAVLILKTWPENYGD  222 (354)
T ss_pred             HHHHHHHhcccccCCC
Confidence            7777776666776543

>TIGR00889 2A0110 nucleoside transporter

Probab=98.32  E-value=1.8e-05  Score=73.64  Aligned_cols=150  Identities=13%  Similarity=0.060  Sum_probs=81.8

Q ss_pred             HHHHhHHHHHHhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCc-cchhhhhhHHHHHHHHHHHHHhhcCCCCCchh
Q 014286          245 AIFYFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGR-KALLQWSFFSMAVSMAIQVAASSSYIPGSASL  320 (427)
Q Consensus       245 ~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (427)
                      ..++..+++.++.|.+..   +......++.+++++..|+++||+|+ |+.+..+.++..++..+..+..+        .
T Consensus        21 ~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~--------~   92 (418)
T TIGR00889        21 WLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTT--------P   92 (418)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcC--------H
Confidence            445555666677788876   56777888999999999999999965 66777666666555544443221        1


Q ss_pred             HHHHHHHHHHHHHHhhcccchhh----hhcc----CcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHH
Q 014286          321 YLSVGGMLMFVLTFALGAGPVPS----LLLP----EIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSI  392 (427)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~----~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~  392 (427)
                      +.......+.+..... ..+...    .+..    |......|.+..|      .+|.+++|.+.|.+ +..+...+|++
T Consensus        93 ~~~~~~~~l~~~~~~~-~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l-~~~~~~~~f~~  164 (418)
T TIGR00889        93 AGMFPVLLANSLAYMP-TIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLL-DIELSNIQLYI  164 (418)
T ss_pred             HHHHHHHHHHHHHHcc-HHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHh-cccchhHHHHH
Confidence            1222222222222211 111111    1222    2222223444444      46888888888877 32222334666


Q ss_pred             HHHHHHHHHHHHHHhccCC
Q 014286          393 FGTFCLMAVAFVKRNVVET  411 (427)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~  411 (427)
                      .+++.++..++ .+..+|.
T Consensus       165 ~~~~~~~~~~~-~~~~~e~  182 (418)
T TIGR00889       165 TAGSSALLGVF-ALTLPDI  182 (418)
T ss_pred             HHHHHHHHHHH-HhcCCCC
Confidence            66655554443 3455554

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.31  E-value=6.4e-09  Score=98.11  Aligned_cols=142  Identities=17%  Similarity=0.150  Sum_probs=99.2

Q ss_pred             HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcccchh
Q 014286          263 LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVP  342 (427)
Q Consensus       263 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (427)
                      .......++..+|+++.|+++||+|||+.+..+..+..++.++..+....     .+.+...+.-++.+.+.+.. .+..
T Consensus        50 ~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~-----~~~~~~~~~R~~~G~~~g~~-~~~~  123 (451)
T PF00083_consen   50 LLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSY-----NNFWMLLIGRFLIGFGIGGA-YVVS  123 (451)
T ss_pred             HHHHHHHhhhcccccccccccccccccccccccccccccccccccccccc-----cccccccccccccccccccc-cccc
Confidence            46667778889999999999999999999999999999888887776511     11233444444455544433 3444


Q ss_pred             hhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH---hccchhHHHHHHHHHHHHHHHHHhccCC
Q 014286          343 SLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQ---LGPQLLYSIFGTFCLMAVAFVKRNVVET  411 (427)
Q Consensus       343 ~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (427)
                      ..++.|..|+++|+...++.+....+|..++..+.-...+.   .+|+..+.+.++..++..+.. .+.||.
T Consensus       124 ~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~-~~~pES  194 (451)
T PF00083_consen  124 PIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLR-FFLPES  194 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccc
Confidence            55999999999999999999998888877777665433222   347877766666655443333 455653

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=98.30  E-value=1.1e-05  Score=74.04  Aligned_cols=184  Identities=11%  Similarity=0.036  Sum_probs=116.5

Q ss_pred             cchhHHHHHHHHHHhhhccchhHHHHhHHHHHH-hcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCc-cchhhhhhH
Q 014286          223 RHFRVVFIGSTLFALQQLSGINAIFYFSSSVFK-SAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGR-KALLQWSFF  297 (427)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~-~~~~~~~~~  297 (427)
                      .+++...+.....+..........+.--|+..+ +.+.+..   ++.....++.++++++.|+...|.+. |+.++.+.+
T Consensus        31 t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~i  110 (488)
T KOG2325|consen   31 TNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFL  110 (488)
T ss_pred             CchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHH
Confidence            344444444444443333222222222344433 1333333   56667888999999999999999886 888999999


Q ss_pred             HHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHH
Q 014286          298 SMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLF  377 (427)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~  377 (427)
                      +++++.++........   +...++.+++-++.  +.+.+.....-.|+++..-.++|.++++..+...-+|.++||.+.
T Consensus       111 i~~~g~llY~~l~~~~---~~~~y~mL~~R~l~--Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q  185 (488)
T KOG2325|consen  111 IAIIGNLLYLALAYVP---NGVKYLMLVARILT--GVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQ  185 (488)
T ss_pred             HHHHHHHHHHHHHhcc---cchHHHHHHHHHHc--CcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHH
Confidence            9999988885444322   22334444443333  344455566777888877778899999998887778888887765


Q ss_pred             HHHHHH-------------hccchhHHHHHHHHHHHHHHHHHhccCC
Q 014286          378 LRLLEQ-------------LGPQLLYSIFGTFCLMAVAFVKRNVVET  411 (427)
Q Consensus       378 g~l~~~-------------~g~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (427)
                      ..+...             .-|..+-++.+++.++..++...+.+|.
T Consensus       186 ~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~  232 (488)
T KOG2325|consen  186 LAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEV  232 (488)
T ss_pred             HHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeec
Confidence            433221             1156677788888888877777777664

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.28  E-value=1.3e-06  Score=58.94  Aligned_cols=67  Identities=25%  Similarity=0.389  Sum_probs=54.6

Q ss_pred             hhhhccccccccchhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHhhHHH
Q 014286           60 SFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPM  128 (427)
Q Consensus        60 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~  128 (427)
                      +++.....+...|.+|...++.|++..+.  |.+.++..+...++.+++|.++||+|+++..+....++
T Consensus         9 yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~i--Gil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~   75 (77)
T PF12832_consen    9 YFFYFAALGCLYPFLPLYLKQLGLSPSQI--GILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM   75 (77)
T ss_pred             HHHHHHHHHHHHhhhhHhhhhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence            44444555667788888889989866666  99999999999999999999999999998877665543

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=98.24  E-value=0.0011  Score=60.92  Aligned_cols=125  Identities=23%  Similarity=0.289  Sum_probs=75.5

Q ss_pred             HHHHHhcCCChhHHHHH---HHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCC--CchhHHHHH
Q 014286          251 SSVFKSAGLSSGLANVF---VGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPG--SASLYLSVG  325 (427)
Q Consensus       251 ~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  325 (427)
                      ..+....|+++..+...   ..+.++.+.++..++.+|+|..+.-.++......++.+..........+  .......+.
T Consensus       282 t~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~  361 (432)
T PF06963_consen  282 TAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLG  361 (432)
T ss_pred             HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHH
Confidence            34445569988854444   4456678889999999999988877777766655554444332221111  112222222


Q ss_pred             HHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHH
Q 014286          326 GMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLL  376 (427)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~  376 (427)
                      ++.+--.+. .++-....-+++|..|+++||+..|+-+..+++...+.-.+
T Consensus       362 gi~~SR~GL-W~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~  411 (432)
T PF06963_consen  362 GIALSRIGL-WSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVL  411 (432)
T ss_pred             HHHHHHHHH-HhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            222222221 12222333388999999999999999999998866555433

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PRK09848 glucuronide transporter; Provisional

Probab=98.23  E-value=9.6e-05  Score=69.70  Aligned_cols=119  Identities=14%  Similarity=0.113  Sum_probs=62.0

Q ss_pred             HhHHHHHHhcCCChh---HHHHHHHHHHHHHHHhHhhhhccc----Cccchh-hhhhHHHHHHHHHHHHHhhcCCCCCch
Q 014286          248 YFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKL----GRKALL-QWSFFSMAVSMAIQVAASSSYIPGSAS  319 (427)
Q Consensus       248 ~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~----g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (427)
                      +...++.+..|+++.   ....+..+...+..++.|+++||.    |||+.. ..+.+...+...++...+. .......
T Consensus        30 ~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  108 (448)
T PRK09848         30 FLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPT-DWSHSSK  108 (448)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcC-CCCcchH
Confidence            344455566788876   455566677788899999999996    666544 4454444443333322221 1111112


Q ss_pred             hHHHHHHHHHHHHHHhhcccchhhhhccCcC-CccchhhHHHHHHHHHHH
Q 014286          320 LYLSVGGMLMFVLTFALGAGPVPSLLLPEIF-PSRIRAKAMAVCMSVHWV  368 (427)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~g~~~g~~~~~~~~  368 (427)
                      .+.......+...+++....|... +..+.. ++++|....+.-.....+
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~a-l~~~~~~~~~~r~~~~~~r~~~~~~  157 (448)
T PRK09848        109 VVYAYLTYMGLGLCYSLVNIPYGS-LATAMTQQPQSRARLGAARGIAASL  157 (448)
T ss_pred             HHHHHHHHHHHHHHHHHhcccHhh-hhhhhcCCHHHHHHHHHHHHHHHHH
Confidence            222233334444445444444433 444443 346677766655443333

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.22  E-value=5.2e-06  Score=74.30  Aligned_cols=114  Identities=18%  Similarity=0.222  Sum_probs=80.1

Q ss_pred             HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhc-ccch
Q 014286          263 LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALG-AGPV  341 (427)
Q Consensus       263 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  341 (427)
                      .+.....++.++|++..|++.||+|||+++....+++.++.++.+......   ...-....++..=+..+++++ -.|+
T Consensus        88 ~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~---~~~~~m~~L~~~R~~LGiGIGGDYPl  164 (538)
T KOG0252|consen   88 LVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTT---SPLGVMMTLCFFRFLLGIGIGGDYPL  164 (538)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCC---CCcchhhHHHHHHHHhhccccCCCcc
Confidence            567777889999999999999999999999999999988887554433211   111112222223333334433 3799


Q ss_pred             hhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 014286          342 PSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLR  379 (427)
Q Consensus       342 ~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~  379 (427)
                      ..+..+|....+.||.-.+.....+..|...|..+.-.
T Consensus       165 SAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~I  202 (538)
T KOG0252|consen  165 SATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALI  202 (538)
T ss_pred             hHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHH
Confidence            99899999999999999988887777766555554433

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.20  E-value=5.1e-05  Score=67.69  Aligned_cols=135  Identities=20%  Similarity=0.151  Sum_probs=82.6

Q ss_pred             HhcCCChhHHHHHHHH--HHHHHHHhHhhhhcccC-----ccchh-hhhhHHHHHHHHHHHHHhhcCCC------CCchh
Q 014286          255 KSAGLSSGLANVFVGI--ANLLGSVVAMVLMDKLG-----RKALL-QWSFFSMAVSMAIQVAASSSYIP------GSASL  320 (427)
Q Consensus       255 ~~~g~~~~~~~~~~~~--~~~~~~~~~g~l~d~~g-----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~------~~~~~  320 (427)
                      .+++.+..+.....++  ...+.++..|+.+|+.+     ||..+ ..+....+.+..+..........      .....
T Consensus         8 vEL~vpA~lv~~lval~~~~ap~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~   87 (403)
T PF03209_consen    8 VELGVPAWLVALLVALHYLVAPLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWL   87 (403)
T ss_pred             HHhccHHHHHHHHHHHHHHHHHHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHH
Confidence            4455555543333332  23356889999999987     66554 44555555555444443322111      11222


Q ss_pred             HHHH--HHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhH
Q 014286          321 YLSV--GGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLY  390 (427)
Q Consensus       321 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~  390 (427)
                      +...  ..+.+++.+....- +...+++.|..|+++|+++.++.....-+|.+++..+.|.+.+.+......
T Consensus        88 g~~~a~l~F~l~G~G~~~s~-T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~  158 (403)
T PF03209_consen   88 GLALAALAFLLYGLGVHASG-TSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLI  158 (403)
T ss_pred             HHHHHHHHHHHHHhhHhHhH-HHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHH
Confidence            2222  22333333333332 334448899999999999999999999999999999999999877644333

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=98.10  E-value=9.8e-05  Score=68.81  Aligned_cols=155  Identities=21%  Similarity=0.201  Sum_probs=99.9

Q ss_pred             HHHHHHhcCCChhHHHHHHHHHHH--HHHHhHhhhhcccC-----ccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHH
Q 014286          250 SSSVFKSAGLSSGLANVFVGIANL--LGSVVAMVLMDKLG-----RKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYL  322 (427)
Q Consensus       250 ~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~g~l~d~~g-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (427)
                      .+++.+++|.++........+..+  ...++.|.++|-+.     ||+.+.++.++..++...+...+...    .....
T Consensus        13 ~~~l~~~l~ls~~~~~~~~~~~~lPw~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~----~s~~~   88 (433)
T PF03092_consen   13 YPFLKDDLGLSPAQLQRLSSLASLPWSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASE----SSAAI   88 (433)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHhCchHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhccccc----chhhh
Confidence            345667789998866666666655  34568999999862     45556666666655555555443311    11122


Q ss_pred             HHHHHHHHHHHHhhcccchhhhhccCcC---CccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Q 014286          323 SVGGMLMFVLTFALGAGPVPSLLLPEIF---PSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLM  399 (427)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~  399 (427)
                      ..+.+++...+.... -.+..+.+.|..   |.+ +|...+.......+|+.++..+.|.+.+..+++..|.+.+.+..+
T Consensus        89 ~~~~l~la~~g~a~~-DV~aDa~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l  166 (433)
T PF03092_consen   89 AVVLLFLASFGYAFA-DVAADALVVELARREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLL  166 (433)
T ss_pred             HHHHHHHHHHHHHHH-HHhhhHHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHH
Confidence            222223333322222 222333444543   444 888899999999999999999999999999999999888887777


Q ss_pred             HHHHHHHhccC
Q 014286          400 AVAFVKRNVVE  410 (427)
Q Consensus       400 ~~~~~~~~~~~  410 (427)
                      ..+......+|
T Consensus       167 ~~~~~~~~~~e  177 (433)
T PF03092_consen  167 MLIVALFLLEE  177 (433)
T ss_pred             HHHHHHHhhhh
Confidence            76666666665

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=98.04  E-value=0.00056  Score=60.05  Aligned_cols=81  Identities=17%  Similarity=0.224  Sum_probs=53.8

Q ss_pred             HHHHHHHHhhhhhccccccccchhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhc-----ccchhHHHHH-h
Q 014286           51 PHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIAD-----GVGRRRAFQL-C  124 (427)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~d-----r~Grr~~l~~-~  124 (427)
                      ..+..+.+.+.+.+.-.+... .+|.+.+.=|.|.++.  +. .+.....+ ---+.|.++.|     |+||||..++ +
T Consensus        31 ~~illLl~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~--a~-fS~ay~P~-sLKllWaPiVDs~y~k~~GrrksWvvp~  105 (510)
T KOG3574|consen   31 SSILLLLFLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQ--AI-FSFAYWPF-SLKLLWAPIVDSVYSKRFGRRKSWVVPC  105 (510)
T ss_pred             hhHHHHHHHHHHcCCchhHhh-hhHHHhcCCCcchhhh--hh-hhhhhhHH-HHHHHHHhhhHHHHHHhhccccceeeeh
Confidence            345666677888899988888 8999988778776665  32 33322232 33578999999     9999987543 4


Q ss_pred             hHHHHHHHHHHH
Q 014286          125 ALPMIIGASISA  136 (427)
Q Consensus       125 ~~~~~~~~~~~~  136 (427)
                      ..+.+...++.+
T Consensus       106 q~llG~~mllLs  117 (510)
T KOG3574|consen  106 QYLLGLFMLLLS  117 (510)
T ss_pred             HHHHHHHHHHHh
Confidence            444444444443

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.04  E-value=0.00015  Score=65.13  Aligned_cols=158  Identities=18%  Similarity=0.117  Sum_probs=95.5

Q ss_pred             cchhHHHHHHHHHHhhh---ccchhHHHHhHHHHHHhcCCChh--HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhH
Q 014286          223 RHFRVVFIGSTLFALQQ---LSGINAIFYFSSSVFKSAGLSSG--LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFF  297 (427)
Q Consensus       223 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~  297 (427)
                      +++|..++...+..+.+   +..+..+..+..   +.+|.+..  +...++.+..++..+.+-|+.||+|-|....++..
T Consensus        41 ~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~---~~Ygs~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~  117 (480)
T KOG2563|consen   41 PRRWVVLLAFSLLNFSNGMQWIQYAPINNYVN---SFYGSSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTV  117 (480)
T ss_pred             hhHhHHHHHHHHHHhcCcchheeehhHHHHHH---HHhcchHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHH
Confidence            44555555554444433   222333333333   33442222  67778888888989999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHH
Q 014286          298 SMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLF  377 (427)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~  377 (427)
                      +.+++..+=........++.....+...+..+......... ....-...-.+|+++|++|..+..+...+|.+++..+.
T Consensus       118 ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim-~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llp  196 (480)
T KOG2563|consen  118 LNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFIL-GLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLP  196 (480)
T ss_pred             HHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhh-ccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhcc
Confidence            99888776554433221122221233333333333222211 12121344568999999999999998889988888877


Q ss_pred             HHHHHHh
Q 014286          378 LRLLEQL  384 (427)
Q Consensus       378 g~l~~~~  384 (427)
                      ..+..+.
T Consensus       197 pilV~~~  203 (480)
T KOG2563|consen  197 PILVPSS  203 (480)
T ss_pred             ceecCCC
Confidence            7666543

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.03  E-value=0.00019  Score=62.79  Aligned_cols=137  Identities=22%  Similarity=0.193  Sum_probs=97.6

Q ss_pred             HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcccchh
Q 014286          263 LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVP  342 (427)
Q Consensus       263 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (427)
                      ++......+..+++...|.++|++|||+.........++...+-...+++.          .++.+=...+++.+..|..
T Consensus       117 llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~----------~L~~f~~l~~~g~gg~pv~  186 (528)
T KOG0253|consen  117 LLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFA----------SLCVFRALWGFGVGGLPVD  186 (528)
T ss_pred             HHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCee----------hhhHHHHHHhccCCCccHh
Confidence            566667788899999999999999999988887777766655554443322          2222333344444557777


Q ss_pred             hhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhccCC
Q 014286          343 SLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVET  411 (427)
Q Consensus       343 ~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (427)
                      .++-.|..|..+|+.-+=+. +...+|.+....+.-....+.||++.+........+.+ ..+++.+|.
T Consensus       187 ~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~a-~f~~w~~ES  253 (528)
T KOG0253|consen  187 SAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFAA-RFLVWVYES  253 (528)
T ss_pred             HHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHH-HHHhhcccC
Confidence            77888999988888877666 77888999999888888889999987766665444443 334556654

>TIGR01272 gluP glucose/galactose transporter

Probab=98.00  E-value=2e-05  Score=69.99  Aligned_cols=94  Identities=15%  Similarity=0.135  Sum_probs=69.3

Q ss_pred             cchhhhhhhc---cCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHhhHHHHHHHHHHHhhhhhHHHHHH
Q 014286           71 NEPLESISLD---LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLG  147 (427)
Q Consensus        71 ~~~~~~i~~~---~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~  147 (427)
                      ....+.+.+|   +|++.++.  ++..+.+..+..+|.+..+++.||+|+|+++.++.++..++.++....++...+ .+
T Consensus       160 ~~w~~~yl~~~~~~g~s~~~a--~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~~-~~  236 (310)
T TIGR01272       160 GSFLVNFLSDPHALGLPEDQA--AHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVAM-WF  236 (310)
T ss_pred             HHHHHHHHHhcccCCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHHH-HH
Confidence            3344544443   56655555  899999999999999999999999999999988888888877666665543332 34


Q ss_pred             HHHHhhhccccccceeeccc
Q 014286          148 RFVVGTGMGLGPTVAALYVT  167 (427)
Q Consensus       148 r~l~G~~~g~~~~~~~~~i~  167 (427)
                      -++.|++.+..+|...+...
T Consensus       237 ~~l~g~~~s~i~P~~~s~a~  256 (310)
T TIGR01272       237 VLALGLFNSIMFPTIFSLAL  256 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            55788888888887654443

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=97.95  E-value=0.00036  Score=64.16  Aligned_cols=166  Identities=20%  Similarity=0.245  Sum_probs=105.6

Q ss_pred             hHHHHhHH-HHHHhcCCChhHHHHHHHH---HHHHHHHhHhhhhcc----cCcc-chhhhhhHHHHHHHHHHHHHhhcCC
Q 014286          244 NAIFYFSS-SVFKSAGLSSGLANVFVGI---ANLLGSVVAMVLMDK----LGRK-ALLQWSFFSMAVSMAIQVAASSSYI  314 (427)
Q Consensus       244 ~~~~~~~~-~~~~~~g~~~~~~~~~~~~---~~~~~~~~~g~l~d~----~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~  314 (427)
                      .....|+. ++.+..|.++.....++.+   .-.+.-++.|.++||    +||+ +-++.+.+..++...++...+... 
T Consensus        29 ~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~-  107 (467)
T COG2211          29 GIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFS-  107 (467)
T ss_pred             HHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcc-
Confidence            33334444 4446688998865555554   455677799999997    5654 445556566666666655544321 


Q ss_pred             CCCchhHHHHHHHHHHHHHHhhcccchhhhhccCcC-CccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh-------cc
Q 014286          315 PGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIF-PSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQL-------GP  386 (427)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~-------g~  386 (427)
                       .........+...++..++.....|-.. +..|.. .+++|.+..+.-..+..+|..+...+.+++....       ||
T Consensus       108 -~~~k~~ya~vtY~l~~l~YT~vniPy~a-l~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~  185 (467)
T COG2211         108 -MTGKLIYALVTYMLLGLGYTLVNIPYGA-LGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGY  185 (467)
T ss_pred             -cCcchHHHHHHHHHHHHHHHheeCchhh-cchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhH
Confidence             2334444555566667777766655544 555543 3578999999999999999888888888887654       45


Q ss_pred             chhHHHHHHHHHHHHHHHHHhccCCC
Q 014286          387 QLLYSIFGTFCLMAVAFVKRNVVETK  412 (427)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (427)
                      .....+++++..+..+.+++..+|+.
T Consensus       186 ~~~~~~~~vi~~i~~l~~~~~v~ER~  211 (467)
T COG2211         186 QGTALVLGVIGVILLLFCFFNVKERV  211 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            55555555566666666666666653

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=97.91  E-value=0.00023  Score=65.46  Aligned_cols=124  Identities=16%  Similarity=0.151  Sum_probs=73.3

Q ss_pred             chhHHHHhHHHHHHhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccC-ccchhhhhhHHHHHHHHHHHHHhhcCCCCC
Q 014286          242 GINAIFYFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLG-RKALLQWSFFSMAVSMAIQVAASSSYIPGS  317 (427)
Q Consensus       242 ~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (427)
                      .+.....|.+.++++.|++..   .......+..+++.++.|.++||.+ +|+.+.+..++.++..........      
T Consensus        17 ~~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~------   90 (400)
T PF03825_consen   17 AYGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSS------   90 (400)
T ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhcc------
Confidence            344444556777888898876   4566666778889999999999986 566666665555554444332211      


Q ss_pred             chhHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHH
Q 014286          318 ASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLL  376 (427)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~  376 (427)
                        .+..+..+.++...+ ....|...++..+...  +++.-.|-....+.+|-+++...
T Consensus        91 --f~~~~~~~~l~~~~~-~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~  144 (400)
T PF03825_consen   91 --FWWLFVIMLLFSFFF-SPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALA  144 (400)
T ss_pred             --HHHHHHHHHHHHHHH-ccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHH
Confidence              123333333333333 2334555555555443  34455666666677776666544

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=97.87  E-value=3.3e-05  Score=68.63  Aligned_cols=104  Identities=30%  Similarity=0.409  Sum_probs=84.9

Q ss_pred             cccccccchhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHhhHHHHHHHHHHHhhhh--hH
Q 014286           65 YHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRN--LI  142 (427)
Q Consensus        65 ~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~--~~  142 (427)
                      ++.....+..+.+..+++.+......++..+.+.++..+++++.|.++||+|||+.+..+.....++.+++++..+  .+
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (338)
T COG0477          16 LDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLA   95 (338)
T ss_pred             HhcchHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHH
Confidence            5556666778888888775432023389999999999999999999999999999988888777777778888776  89


Q ss_pred             HHHHHHHHHhhhccccccceeecccC
Q 014286          143 GMLLGRFVVGTGMGLGPTVAALYVTE  168 (427)
Q Consensus       143 ~l~~~r~l~G~~~g~~~~~~~~~i~~  168 (427)
                      .+++.|+++|++.+...+....++.|
T Consensus        96 ~~~~~~~~~g~~~~~~~~~~~~~~~~  121 (338)
T COG0477          96 LLLILRLLQGLGGGGLLPVASALLSE  121 (338)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            99999999999999888887777776

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=97.75  E-value=0.004  Score=58.68  Aligned_cols=143  Identities=14%  Similarity=0.159  Sum_probs=88.8

Q ss_pred             HHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHH-HHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcccchh
Q 014286          264 ANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSM-AVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVP  342 (427)
Q Consensus       264 ~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (427)
                      ...+..+...+..++.|-++|+-++||.+...+... .++...+.+..      +...+...+..++...++... ....
T Consensus        75 ~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~------~~~~~~~~~l~iia~v~~~~~-~vfy  147 (477)
T PF11700_consen   75 ANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVS------PGQWWLALVLFIIANVGYEAS-NVFY  147 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhC------cchHHHHHHHHHHHHHHHHHH-HHHH
Confidence            344555666677788899999998776665544444 34444444431      112233333333334444332 3344


Q ss_pred             hhhccCcCCccch--------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHh--------ccch
Q 014286          343 SLLLPEIFPSRIR--------------------------AKAMAVCMSVHWVINFFVGLLFLRLLEQL--------GPQL  388 (427)
Q Consensus       343 ~~~~~~~~p~~~~--------------------------g~~~g~~~~~~~~g~~~~~~~~g~l~~~~--------g~~~  388 (427)
                      .++..|+.+++.+                          ++..+.-...+++|+.+.-.+.-.+....        ..+.
T Consensus       148 na~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~  227 (477)
T PF11700_consen  148 NAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRV  227 (477)
T ss_pred             HHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhH
Confidence            5588888888877                          99999999999999888776654443322        2366


Q ss_pred             hHHHHHHHHHHHHHHHHHhccCCCC
Q 014286          389 LYSIFGTFCLMAVAFVKRNVVETKG  413 (427)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~~~  413 (427)
                      .+.+.++..++..+-.+++.|++++
T Consensus       228 ~~~~~a~ww~vfsiP~~~~~~~~~~  252 (477)
T PF11700_consen  228 AFLIVALWWLVFSIPLFLWLPDRPG  252 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            6777777777777777677776643

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=97.61  E-value=0.004  Score=48.51  Aligned_cols=108  Identities=12%  Similarity=0.065  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcccchh
Q 014286          263 LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVP  342 (427)
Q Consensus       263 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (427)
                      ....+......++.++.+.+.+++|.|+.+.++.+...+-.......         +.+..+....+.+.+.+..+.+..
T Consensus        41 ~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~~---------~~~~l~~~s~l~G~~~a~lW~aqg  111 (156)
T PF05978_consen   41 YSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFYP---------NSYTLYPASALLGFGAALLWTAQG  111 (156)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh---------hHHHHHHHHHHHhhhhHHhhHhhh
Confidence            44555566677778888999999999999999888777554443221         124556666677777776665555


Q ss_pred             hhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 014286          343 SLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRL  380 (427)
Q Consensus       343 ~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l  380 (427)
                      . ++.+...++.+++-.++...+...+.++|..+.-.+
T Consensus       112 ~-ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~  148 (156)
T PF05978_consen  112 T-YLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFI  148 (156)
T ss_pred             H-HHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4 788888888999999999998888877777665443

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=97.57  E-value=0.00017  Score=64.82  Aligned_cols=70  Identities=19%  Similarity=0.171  Sum_probs=49.5

Q ss_pred             hhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcc----cchhHHHHH-hhHHHHHHHHHHHhhhhhHHH
Q 014286           73 PLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG----VGRRRAFQL-CALPMIIGASISATTRNLIGM  144 (427)
Q Consensus        73 ~~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr----~Grr~~l~~-~~~~~~~~~~~~~~~~~~~~l  144 (427)
                      .+|.+..++|++..-.  +.+--.-.+...+.||+.|..+||    |||||.++. +.++..++.++.++++++..+
T Consensus        54 y~tPyl~~lGvphk~~--S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~  128 (498)
T KOG0637|consen   54 YLTPYLQSLGVPHKWS--SIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLL  128 (498)
T ss_pred             cccHHHHHcCCCcccc--cccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHH
Confidence            4566667777754433  555555566777899999999995    898887755 556667778888888776554

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=97.56  E-value=8.8e-05  Score=66.18  Aligned_cols=113  Identities=15%  Similarity=0.204  Sum_probs=84.9

Q ss_pred             HHHHHHhhhhhccccccccchhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHhhHHHHHHH
Q 014286           53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGA  132 (427)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~  132 (427)
                      .+++.-..+.++.+. ++...-..-.+++|++..+.  .++.-...+..++|++++|+|.||+|.|+++..+++++.+.+
T Consensus       256 ~FLiA~~~~~DGv~t-il~~~~~fg~~~~gls~~~l--ll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~  332 (438)
T COG2270         256 LFLIARFFYIDGVNT-ILAMGGVFGAADLGLSSTEL--LLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAA  332 (438)
T ss_pred             HHHHHHHHHHhhHHH-HHHHHHHHHHHHcCccHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHH
Confidence            444444445555543 22222223345899876665  777778888999999999999999999999999999999999


Q ss_pred             HHHHhhhhhHHHHHHHHHHhhhccccccceeecccC
Q 014286          133 SISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTE  168 (427)
Q Consensus       133 ~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~  168 (427)
                      +..-+...-..+.++-.+.|...|+....+-++..+
T Consensus       333 ~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~  368 (438)
T COG2270         333 LYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLAR  368 (438)
T ss_pred             HHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence            988887777777788888999998888777666665

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=97.55  E-value=0.00043  Score=58.56  Aligned_cols=87  Identities=17%  Similarity=0.177  Sum_probs=68.8

Q ss_pred             ccccchhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHhhHHHHHHHHHHHhh-------hh
Q 014286           68 GVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT-------RN  140 (427)
Q Consensus        68 ~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-------~~  140 (427)
                      ..++..-|++++.+|++.++.  ..+.+.-.+|..+| ++.|.+.|++|+|.++.+|.+...+|..+..++       .+
T Consensus        19 Y~Fs~yS~~Lk~~l~~sq~~l--~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~   95 (250)
T PF06813_consen   19 YTFSAYSPQLKSRLGYSQSQL--NTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLP   95 (250)
T ss_pred             cchhhhhHHHHHHhCCCHHHH--HHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccc
Confidence            344556789999999865555  78888999998875 889999999999999999999999998877653       36


Q ss_pred             hHHHHHHHHHHhhhccc
Q 014286          141 LIGMLLGRFVVGTGMGL  157 (427)
Q Consensus       141 ~~~l~~~r~l~G~~~g~  157 (427)
                      +|.+.+..++.|.+.+.
T Consensus        96 ~~~~~~~~~l~~~s~~~  112 (250)
T PF06813_consen   96 VWLMCLFLFLGGNSSCW  112 (250)
T ss_pred             hHHHHHHHHHHcccHHH
Confidence            77777777777766443

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=97.20  E-value=0.049  Score=51.01  Aligned_cols=106  Identities=9%  Similarity=-0.078  Sum_probs=69.5

Q ss_pred             HHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCC--C--------------c-------hhHHHHHHHHHHHH
Q 014286          276 SVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPG--S--------------A-------SLYLSVGGMLMFVL  332 (427)
Q Consensus       276 ~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--------------~-------~~~~~~~~~~~~~~  332 (427)
                      .++.+++++|++|+++...........+.++++......+.  .              .       ..|... ...+..-
T Consensus        61 ~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~-~FYv~~e  139 (472)
T TIGR00769        61 MLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFA-LFYVMAE  139 (472)
T ss_pred             HHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHH-HHHHHHH
Confidence            67789999999999888776666665555555442211100  0              0       011111 1111222


Q ss_pred             HHhhcccc-hhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014286          333 TFALGAGP-VPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLE  382 (427)
Q Consensus       333 ~~~~~~~~-~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~  382 (427)
                      .++....+ +.+.+++|++..++..+-.++....+++|..+++.+...+.+
T Consensus       140 lw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~  190 (472)
T TIGR00769       140 LWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK  190 (472)
T ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22222233 778899999999999999999999999999999999888763

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF12832 MFS_1_like: MFS_1 like family

Probab=97.18  E-value=0.002  Score=43.43  Aligned_cols=56  Identities=18%  Similarity=0.319  Sum_probs=42.2

Q ss_pred             chhHHHHhHHHHHHhcCCChhH---HHHHHHHHHHHHHHhHhhhhcccCccchhhhhhH
Q 014286          242 GINAIFYFSSSVFKSAGLSSGL---ANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFF  297 (427)
Q Consensus       242 ~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~  297 (427)
                      ......-|.+.+.++.|+++..   ...+..+..+++.++.|+++||.++++.......
T Consensus        15 ~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~   73 (77)
T PF12832_consen   15 ALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSL   73 (77)
T ss_pred             HHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHH
Confidence            4555556677777889999884   5555556778899999999999998877665443

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=97.06  E-value=0.0013  Score=55.54  Aligned_cols=114  Identities=15%  Similarity=0.102  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHhhhhhccccccccchhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHhhHHH
Q 014286           49 SFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPM  128 (427)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~  128 (427)
                      .+.++.++|..+....+..-..++.  .+++.+|+|....  +-+.+....-.++.+++.|.++||+|++-..+.+..+.
T Consensus       265 pfw~~~iicv~yyva~fPFi~lg~~--fF~~rfGlS~~~a--~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~  340 (459)
T KOG4686|consen  265 PFWVLVIICVLYYVAWFPFITLGPM--FFQKRFGLSAVSA--GNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACIL  340 (459)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhhhHH--HHHHhhCCChhhc--cchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHH
Confidence            3445666676666555544333332  5788999976665  77777777777889999999999999998877765544


Q ss_pred             HH-HHHHHHhhhhhHHHHHHHHHHhhhcc----ccccceeecccC
Q 014286          129 II-GASISATTRNLIGMLLGRFVVGTGMG----LGPTVAALYVTE  168 (427)
Q Consensus       129 ~~-~~~~~~~~~~~~~l~~~r~l~G~~~g----~~~~~~~~~i~~  168 (427)
                      .+ +-....+  +++.=.+...+.|+..+    ..+|....+++|
T Consensus       341 tl~~H~~l~F--t~lsPy~~m~~lGLsysllAcslWP~va~~vpE  383 (459)
T KOG4686|consen  341 TLLGHSGLFF--TFLSPYTSMTFLGLSYSLLACSLWPCVASLVPE  383 (459)
T ss_pred             HHHHhhhHHh--hhccHHHHHHHHhhhHHHHHHHHhhhhhhhCCH
Confidence            43 3222222  22222344555666544    356666666666

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=97.00  E-value=0.062  Score=49.73  Aligned_cols=142  Identities=12%  Similarity=0.029  Sum_probs=74.8

Q ss_pred             HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHH----HHHHHHHhhcCCCC---CchhHHHHHHHHHHHHHHh
Q 014286          263 LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVS----MAIQVAASSSYIPG---SASLYLSVGGMLMFVLTFA  335 (427)
Q Consensus       263 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~  335 (427)
                      .....-.+..++.+...|...||..|.+....+.+..-++    ..++..........   .......+....+.+....
T Consensus        42 iygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~  121 (432)
T PF06963_consen   42 IYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIER  121 (432)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHH
Confidence            4555566677777888899999999988776664433222    22222222111111   1111122222222222111


Q ss_pred             hcccchhhh----hccCcC--CccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHH
Q 014286          336 LGAGPVPSL----LLPEIF--PSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFV  404 (427)
Q Consensus       336 ~~~~~~~~~----~~~~~~--p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~  404 (427)
                      ........+    .+..+.  +++......+...-+=.+...++|.+.|.+.+..++.....+.++..+++..+=
T Consensus       122 Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vE  196 (432)
T PF06963_consen  122 LASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVE  196 (432)
T ss_pred             HHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHH
Confidence            111111100    111122  233444455555555556899999999999998888877777777777766553

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=96.98  E-value=0.015  Score=52.80  Aligned_cols=71  Identities=15%  Similarity=0.161  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHHHHHhHHhhhcccchhHHHHHhhHHHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccce
Q 014286           92 LVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVA  162 (427)
Q Consensus        92 ~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~  162 (427)
                      .+.-+-.+...+..+.+.++.+|+..+.=.....+++.++.++.++++|.+.=+++-.+.+++.|......
T Consensus        63 ~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tf  133 (402)
T PF02487_consen   63 AVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTF  133 (402)
T ss_pred             HHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHH
Confidence            34444445555666667777777765444555666777788888888888877777777777776554433

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=96.82  E-value=0.049  Score=47.97  Aligned_cols=129  Identities=24%  Similarity=0.186  Sum_probs=78.9

Q ss_pred             hHHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcccch
Q 014286          262 GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPV  341 (427)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (427)
                      ........+...++.+..|++.||.|||+.+..+......+.+...+...      ...+.........+.+.+ ...+.
T Consensus        42 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~g~~~~-~~~~~  114 (338)
T COG0477          42 GLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPN------VGLALLLILRLLQGLGGG-GLLPV  114 (338)
T ss_pred             HHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCcc------chHHHHHHHHHHHHhhhH-HHHHH
Confidence            35666667777777799999999999997777666543333233332221      111222222222222222 34566


Q ss_pred             hhhhccCcCCc-cchhhHHHHHHH-HHHHHHHHHHHHHHHHHHH--hccchhHHHHHHHH
Q 014286          342 PSLLLPEIFPS-RIRAKAMAVCMS-VHWVINFFVGLLFLRLLEQ--LGPQLLYSIFGTFC  397 (427)
Q Consensus       342 ~~~~~~~~~p~-~~~g~~~g~~~~-~~~~g~~~~~~~~g~l~~~--~g~~~~~~~~~~~~  397 (427)
                      ...+..|..|. +.|+...+.... ...++..+++.+.+.+...  .+|+..+.......
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (338)
T COG0477         115 ASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLG  174 (338)
T ss_pred             HHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence            66688898887 578888888888 5777888888777766654  35665444444333

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=96.81  E-value=0.072  Score=48.55  Aligned_cols=157  Identities=13%  Similarity=-0.010  Sum_probs=95.8

Q ss_pred             hhHHHHhHHHHHHh-cCCChh----HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCC
Q 014286          243 INAIFYFSSSVFKS-AGLSSG----LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGS  317 (427)
Q Consensus       243 ~~~~~~~~~~~~~~-~g~~~~----~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (427)
                      -..-++..|++.+. .+++..    .+.-...=..++.-+....+.|..+.|++++.+.+...+...++.+....     
T Consensus        20 rPsEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv-----   94 (412)
T PF01770_consen   20 RPSEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSV-----   94 (412)
T ss_pred             CCCCccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcH-----
Confidence            34455666677665 677766    12222333445556677889999999999999888887777776665431     


Q ss_pred             chhHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cchhHHHHHH
Q 014286          318 ASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLG--PQLLYSIFGT  395 (427)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g--~~~~~~~~~~  395 (427)
                         +...+.-+.++...+  .-...++++-...|+++--++.+.......+|..++..++-.+....+  +.....+..+
T Consensus        95 ---~~mq~~q~~yg~~~a--~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~  169 (412)
T PF01770_consen   95 ---LAMQLMQFFYGLATA--AEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLA  169 (412)
T ss_pred             ---HHHHHHHHHHHHHHH--HHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence               222333333333332  233444567777788888899999999988888888887776666333  3333333333


Q ss_pred             HHHHHHHHHHHhccC
Q 014286          396 FCLMAVAFVKRNVVE  410 (427)
Q Consensus       396 ~~~~~~~~~~~~~~~  410 (427)
                      ...++.++. +++|.
T Consensus       170 ~~~~a~~~~-~fLP~  183 (412)
T PF01770_consen  170 SVSLALLIA-LFLPM  183 (412)
T ss_pred             HHHHHHHHH-HHcCC
Confidence            333333333 33443

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=96.81  E-value=0.0003  Score=67.13  Aligned_cols=172  Identities=14%  Similarity=0.011  Sum_probs=1.0

Q ss_pred             HhhhccchhHHHHhHHHHHHhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhc
Q 014286          236 ALQQLSGINAIFYFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSS  312 (427)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~  312 (427)
                      .+.+...........+.+.++++++..   .+...+-++.++..++..++.+|..|-+.+-.+.++++++.+++.+....
T Consensus        12 ~~~q~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~   91 (539)
T PF03137_consen   12 GLFQMMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFL   91 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhh
Confidence            333344455555556777788888776   56666778888888888899998888788888888888888877653321


Q ss_pred             CCCC--------------------------------------CchhHHHHHHHHHHHHHHhhc---ccchhhhhccCcCC
Q 014286          313 YIPG--------------------------------------SASLYLSVGGMLMFVLTFALG---AGPVPSLLLPEIFP  351 (427)
Q Consensus       313 ~~~~--------------------------------------~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~p  351 (427)
                      ....                                      ..........+++..+..+++   ..++..+|+.|..+
T Consensus        92 ~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~  171 (539)
T PF03137_consen   92 SGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVS  171 (539)
T ss_dssp             ------------------------------------------------------------SSS-----------------
T ss_pred             cCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccc
Confidence            1000                                      000111122222222223333   34667779999999


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------hc-cchhHHHHHHHHHHHHHHHHHh
Q 014286          352 SRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQ---------------------LG-PQLLYSIFGTFCLMAVAFVKRN  407 (427)
Q Consensus       352 ~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~---------------------~g-~~~~~~~~~~~~~~~~~~~~~~  407 (427)
                      ++..+...|+..+...+|-++|-.+++.....                     .| |+..|++.+.+.++.++....+
T Consensus       172 ~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~F  249 (539)
T PF03137_consen  172 KKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFF  249 (539)
T ss_dssp             ------------------------------------------------------------------------------
T ss_pred             cccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            99999999999999888888887777655431                     12 6667777777777666655444

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.81  E-value=0.024  Score=55.24  Aligned_cols=178  Identities=14%  Similarity=-0.005  Sum_probs=112.5

Q ss_pred             HHHHHHhhhccchhHHHHhHHHHHHhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHH
Q 014286          231 GSTLFALQQLSGINAIFYFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQV  307 (427)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~  307 (427)
                      +..+..+.+......+......+-+.++++..   ++...+-++..+......+...|..|-+.+-++.++++++.++..
T Consensus       101 ~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~a  180 (735)
T KOG3626|consen  101 LLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFA  180 (735)
T ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHh
Confidence            33333333333334455556666677777766   444555677777777888888898888889999999999888877


Q ss_pred             HHhhcCC---------------C---------------------C----CchhHHHHHHHHHHHHHHhhc---ccchhhh
Q 014286          308 AASSSYI---------------P---------------------G----SASLYLSVGGMLMFVLTFALG---AGPVPSL  344 (427)
Q Consensus       308 ~~~~~~~---------------~---------------------~----~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  344 (427)
                      +......               .                     +    ........+.+++..+..+++   ..++..+
T Consensus       181 lPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGis  260 (735)
T KOG3626|consen  181 LPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGIS  260 (735)
T ss_pred             ChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCc
Confidence            6521110               0                     0    011111111122222222222   3456667


Q ss_pred             hccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh------------------c-cchhHHHHHHHHHHHHHHHH
Q 014286          345 LLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQL------------------G-PQLLYSIFGTFCLMAVAFVK  405 (427)
Q Consensus       345 ~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~------------------g-~~~~~~~~~~~~~~~~~~~~  405 (427)
                      |+.|...+++.+...|+..++..+|-++|-.+++.+...+                  | |+..|++.+.+.++.++..+
T Consensus       261 YiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f  340 (735)
T KOG3626|consen  261 YIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLF  340 (735)
T ss_pred             cccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999988888887777765421                  2 66678888888777776665


Q ss_pred             Hhc
Q 014286          406 RNV  408 (427)
Q Consensus       406 ~~~  408 (427)
                      ++-
T Consensus       341 ~fP  343 (735)
T KOG3626|consen  341 FFP  343 (735)
T ss_pred             hCc
Confidence            443

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=96.80  E-value=0.0084  Score=55.01  Aligned_cols=116  Identities=12%  Similarity=0.021  Sum_probs=78.3

Q ss_pred             chhhhhhHHHHHHHHHHHHHhhcCCC-CCchhHHHHHHHHHHHHHHhhcccchhhhhccCcCCcc---chhhHHHHHHHH
Q 014286          290 ALLQWSFFSMAVSMAIQVAASSSYIP-GSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSR---IRAKAMAVCMSV  365 (427)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~g~~~g~~~~~  365 (427)
                      +++..+.++..++.+++......... .........+++.+...+.+ +.-|....+..|.++++   +|.+....+...
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G-~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~   80 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTG-GIKPNISPFGADQYDEDDDSRRDSFFNWFYWG   80 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHH-CCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccc-cccccHHHHHHHHhcccchhhhhhhHHHHHHH
Confidence            46677888888888886665543322 12223344555555555544 33455555888887755   466777888999


Q ss_pred             HHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHH
Q 014286          366 HWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKR  406 (427)
Q Consensus       366 ~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  406 (427)
                      .++|..+++.+.+++.++.||...|.+.++..+++.+..+.
T Consensus        81 in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~  121 (372)
T PF00854_consen   81 INIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLS  121 (372)
T ss_dssp             HHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHC
T ss_pred             HhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999888888877666543

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=96.71  E-value=0.0091  Score=46.54  Aligned_cols=74  Identities=19%  Similarity=0.177  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHHHhHHhhhcccchhHHHHHhhHHHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccceeecccC
Q 014286           94 VSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTE  168 (427)
Q Consensus        94 ~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~  168 (427)
                      .++......+++++.+.+.+++|.|+.+++|.+.+.+-.... +-++.+.++.+-.+.|++.+..++....++.+
T Consensus        43 lai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~  116 (156)
T PF05978_consen   43 LAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGTYLTS  116 (156)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHH
Confidence            455566677888889999999999999999999998655543 56778899999999999999998887776665

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PRK03612 spermidine synthase; Provisional

Probab=96.64  E-value=0.054  Score=51.81  Aligned_cols=51  Identities=22%  Similarity=0.271  Sum_probs=36.9

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHH-HhccchhHHHHHHHHHHHHHHH
Q 014286          354 IRAKAMAVCMSVHWVINFFVGLLFLRLLE-QLGPQLLYSIFGTFCLMAVAFV  404 (427)
Q Consensus       354 ~~g~~~g~~~~~~~~g~~~~~~~~g~l~~-~~g~~~~~~~~~~~~~~~~~~~  404 (427)
                      ..|...|-.+....+|+++|+.+.+.+.- ..|......+.+.+.++.+++.
T Consensus       142 ~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~~~  193 (521)
T PRK03612        142 HLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAALVF  193 (521)
T ss_pred             chhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence            35677888899999999999999888654 6786666666666555544333

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=96.22  E-value=0.89  Score=44.04  Aligned_cols=98  Identities=17%  Similarity=0.229  Sum_probs=71.9

Q ss_pred             ccccchhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhccc-chhHHHHHhhHHHHHHHHHHHhhhhh-----
Q 014286           68 GVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV-GRRRAFQLCALPMIIGASISATTRNL-----  141 (427)
Q Consensus        68 ~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~~~-----  141 (427)
                      ++..+.+..+.+++|.+....  .-..+.+.-......+..++++|-| ||-+++.++.++..++..+..++...     
T Consensus        55 g~~~nlv~ylt~~~~~~~~~a--a~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p  132 (571)
T KOG1237|consen   55 GLVSNLVTYLTLELHASGGGA--ANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLP  132 (571)
T ss_pred             cchhHHHHHHHHHhccchHHH--HHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence            345667788888988765444  6677788888888889999999975 89999999999998886655443222     


Q ss_pred             --------------------HHHHHHHHHHhhhccccccceeeccc
Q 014286          142 --------------------IGMLLGRFVVGTGMGLGPTVAALYVT  167 (427)
Q Consensus       142 --------------------~~l~~~r~l~G~~~g~~~~~~~~~i~  167 (427)
                                          ..+..+.-+..+|.|+.-+....+-+
T Consensus       133 ~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGa  178 (571)
T KOG1237|consen  133 FMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGA  178 (571)
T ss_pred             ccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcc
Confidence                                23555666777788877777666655

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=96.19  E-value=0.13  Score=45.19  Aligned_cols=298  Identities=12%  Similarity=0.117  Sum_probs=155.3

Q ss_pred             HHHHHHHHHHHHhHHhhhcccchhHHHHHhhHHHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccceeecccC--Cchh
Q 014286           95 SMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTE--SPHW  172 (427)
Q Consensus        95 s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~--~~~~  172 (427)
                      -+..-.+.+.-++.=.+.|..-.|++++.-.+.......+.-+.++.+.+-+.-+..|...+... +-++++-+  .|..
T Consensus        49 PvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tAaEI-AYysYIYs~Vd~~~  127 (433)
T KOG3810|consen   49 PVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATAAEI-AYYSYIYSKVDPEM  127 (433)
T ss_pred             cchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHHHHH-hhhheeeeecCHHH
Confidence            34445566666777788999999999988888888888888899999998888888888765433 22333331  1111


Q ss_pred             hhhcCChHHHHHHHHHHhC---------------------------------C--CchhhHHHHHhhhhc------CCCC
Q 014286          173 LYKKGRTAEAEAEFEKLLG---------------------------------G--SHVKSSLAELSKLDR------GDDG  211 (427)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~---------------------------------~--~~~~~~~~~~~~~~~------~~~~  211 (427)
                      +-.....-++....+...+                                 .  +..++.....+.+++      ++..
T Consensus       128 Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl~f~~~~~~~~v~~~e~~~  207 (433)
T KOG3810|consen  128 YKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRVKRSLYFHRLEDKISVGDLEEMN  207 (433)
T ss_pred             HHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCCchhhhhhcccccceeccchhcC
Confidence            1110000011100110000                                 0  000100000000000      0000


Q ss_pred             Ccch---------------hHhhhcccchhHHHHHHHHHHhhhccchhHHHHhHHHHHHhcCCCh-h----HHHHHHHHH
Q 014286          212 DIVK---------------FEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSS-G----LANVFVGIA  271 (427)
Q Consensus       212 ~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~----~~~~~~~~~  271 (427)
                      .+.+               +.+..++|..    +...++.....+++.-..+|.+.+-+...-++ .    ..-++..+.
T Consensus       208 ~~~~~~~~l~~~~~~l~~~l~~~y~np~l----l~WSlWwAl~scg~~QV~nY~Q~LW~~~~~~~~~vyNG~veAv~tlL  283 (433)
T KOG3810|consen  208 PQASYMSYLRGAFVLLWRDLQECYSNPRL----LKWSLWWALASCGYYQVTNYTQILWKEVAPNPANVYNGAVEAVSTLL  283 (433)
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHhcCchh----hhhHHHHHHhhchhHHHHHHHHHHHHhhCCCchhhhcCHHHHHHHHH
Confidence            1111               1122333332    22334444444466666777777766653211 1    344555667


Q ss_pred             HHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcccchhhhhccCcCC
Q 014286          272 NLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFP  351 (427)
Q Consensus       272 ~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  351 (427)
                      ++++.+..|.+.-.+.|..-+.++......+.+++...      .+.+.|...+...++...+.....-... -+++...
T Consensus       284 Ga~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~------~t~~Iw~~Ya~yvlfr~~y~l~itiA~~-~iA~nL~  356 (433)
T KOG3810|consen  284 GAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMA------QTQHIWVCYAGYVLFRVIYQLTITIATF-QIARNLS  356 (433)
T ss_pred             HHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhh------cccceehhhhhHHHHHhhHhhhhhHHHH-HHHHhhh
Confidence            77888889999777776644433333222222222221      2344567777777777666654443333 4444445


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----------cchhHHHHHHHHHHHHHHHHHh
Q 014286          352 SRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLG-----------PQLLYSIFGTFCLMAVAFVKRN  407 (427)
Q Consensus       352 ~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-----------~~~~~~~~~~~~~~~~~~~~~~  407 (427)
                      .+.-|...|+..++.-+-..+-..+   ..|..|           |...|.+.+++.++...+.+..
T Consensus       357 ~e~~gLvFGiNTFvAl~lQsilT~i---Vvd~~g~~L~ir~Q~~~Y~~Yf~v~~~i~~~~~~~~~~~  420 (433)
T KOG3810|consen  357 SELFGLVFGINTFVALILQSILTLI---VVDDRGLGLDIRTQFVVYSSYFIVLGVIFLIGFGIEYLM  420 (433)
T ss_pred             hhhheeeeehHHHHHHHHHHhheEE---EEcccccCCCcceeEEEEeehHHHHHHHHHHHHHHHHHH
Confidence            6778889998777665544443332   234222           4556888888888876655433

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=95.99  E-value=0.27  Score=48.42  Aligned_cols=94  Identities=16%  Similarity=0.193  Sum_probs=67.4

Q ss_pred             hhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcc-cchhHHHHHhhHHHHHHHHHHHhhhh--------hHH
Q 014286           73 PLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG-VGRRRAFQLCALPMIIGASISATTRN--------LIG  143 (427)
Q Consensus        73 ~~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~~--------~~~  143 (427)
                      +.-.+.+.+|.+.+..  ..+...+....-+..++.|.++|+ +||++.+.++.+++.++.++.+++..        ...
T Consensus        10 LvlYl~~~lg~~~~~A--~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~   87 (654)
T TIGR00926        10 LVLYFLNFLGFSESTS--TVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLL   87 (654)
T ss_pred             HHHHHHHHcCCcHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHH
Confidence            3445556677765555  567777777778888999999997 69999999999999999888877421        123


Q ss_pred             HHHHHHHHhhhccccccceeecccC
Q 014286          144 MLLGRFVVGTGMGLGPTVAALYVTE  168 (427)
Q Consensus       144 l~~~r~l~G~~~g~~~~~~~~~i~~  168 (427)
                      .+++-.+..+|.|+.-+...+...|
T Consensus        88 ~l~gLaLia~G~GgiKp~vsaf~gd  112 (654)
T TIGR00926        88 DLLGLALIALGTGGIKPCVSAFGGD  112 (654)
T ss_pred             HHHHHHHHHhhccccccCchhhhHh
Confidence            4556666677777776666555544

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=95.73  E-value=1  Score=40.95  Aligned_cols=102  Identities=9%  Similarity=-0.138  Sum_probs=46.8

Q ss_pred             cccccccchhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHhhHHH---HHHHHHHHhh---
Q 014286           65 YHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPM---IIGASISATT---  138 (427)
Q Consensus        65 ~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~---~~~~~~~~~~---  138 (427)
                      .....+....+.+.+++-....+   ....+.+.+...+..++...+--+..-|....++..++   .+....+.++   
T Consensus        32 lpWN~fiTa~~y~~~~~~~~~~~---~~F~~~~~~~a~i~~ll~~~~n~~~~~~~~~~~~~~l~~~~il~i~~l~~~~v~  108 (406)
T KOG1479|consen   32 LPWNMFITASDYYYYRFPGYHNS---KNFTSSYTLAAQIPLLLFNLLNAFLNTRLRTRVGYLLSLIAILFIVTLDLALVK  108 (406)
T ss_pred             cchHhhhccHHHHHhhcCCCchH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            34445555667777776533231   33444444444444444444333333222111211111   1112222221   


Q ss_pred             ------hhhHHHHHHHHHHhhhccccccceeecccCC
Q 014286          139 ------RNLIGMLLGRFVVGTGMGLGPTVAALYVTES  169 (427)
Q Consensus       139 ------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~  169 (427)
                            ..+...++.-.+.|++.|..........++-
T Consensus       109 ~~~~~~~ff~vt~~~vv~~~~a~a~~qgs~~G~a~~~  145 (406)
T KOG1479|consen  109 TDTWTNGFFLVTLIIVVLLNLANAVVQGSLYGLAGLF  145 (406)
T ss_pred             cCCccchhHHHHHHHHHHHhhhhhhhccchhhhhhcC
Confidence                  2455566667777777776665555555543

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=95.30  E-value=1.6  Score=38.35  Aligned_cols=70  Identities=13%  Similarity=0.111  Sum_probs=54.6

Q ss_pred             HHHHHHHHHhHHhhhcccchhHHHHHhhHHHHHHHHHHHhhhhhHHHHHHHHHHhhhccccccceeecccC
Q 014286           98 LGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTE  168 (427)
Q Consensus        98 ~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~  168 (427)
                      .+..+...++.+.+..++|.|+++.++...+... +..-+-+.+..++-.-.+.|+|.+..+..-.+|+.+
T Consensus        68 y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~ly-iA~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~  137 (390)
T KOG3097|consen   68 YLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALY-IAANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTP  137 (390)
T ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-HHhhcchhHHhhccHHHhhccccccccccCcceecH
Confidence            4455566677779999999999999888777653 223344678889999999999999999888888776

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=95.15  E-value=0.22  Score=34.04  Aligned_cols=65  Identities=18%  Similarity=0.121  Sum_probs=54.2

Q ss_pred             HHhHHHHHHhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhh
Q 014286          247 FYFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASS  311 (427)
Q Consensus       247 ~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~  311 (427)
                      .-.+|.+.++.+++..   ++.....++.++|.+...++.++..+++.+..+.+...+..+.+.+..+
T Consensus        12 TplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~   79 (85)
T PF06779_consen   12 TPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHS   79 (85)
T ss_pred             HhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3457888888888877   6888888999999999999999988888888888888888888776543

Note that many members are hypothetical proteins.

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=94.64  E-value=1.6  Score=37.12  Aligned_cols=27  Identities=4%  Similarity=0.074  Sum_probs=19.0

Q ss_pred             CCcchhHhhhcccchhHHHHHHHHHHh
Q 014286          211 GDIVKFEELLYGRHFRVVFIGSTLFAL  237 (427)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (427)
                      ..+.+..+.+|++..|...+.+.....
T Consensus        82 ~~~~s~~~~LK~K~tw~w~~~Yg~wLv  108 (267)
T PF07672_consen   82 SKKPSYKSILKEKETWKWILIYGIWLV  108 (267)
T ss_pred             cccchHHHHHccchHHHHHHHHHHHhe
Confidence            345778899999988876666555443

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.37  E-value=0.5  Score=44.01  Aligned_cols=106  Identities=10%  Similarity=-0.012  Sum_probs=81.6

Q ss_pred             HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcccchh
Q 014286          263 LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVP  342 (427)
Q Consensus       263 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (427)
                      ....+......+..++.+.+.|+.+.|+.+.++..........+....         .+.......+.+++.+..+..-.
T Consensus        54 ~~~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~N---------~y~~yfssallG~Gaallw~GqG  124 (461)
T KOG3098|consen   54 YGQAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFPN---------SYYLYFSSALLGFGAALLWTGQG  124 (461)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcc---------hHHHHHHHHHhhhhHHheecccc
Confidence            446666777788899999999999999999998887776655544322         25667777777877776555555


Q ss_pred             hhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHH
Q 014286          343 SLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFL  378 (427)
Q Consensus       343 ~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g  378 (427)
                      . +.+|...++...+..++...+...+.++|..+.-
T Consensus       125 ~-ylt~~st~~tie~Nisi~Wai~~~~li~Ggi~l~  159 (461)
T KOG3098|consen  125 G-YLTSNSTRETIERNISIFWAIGQSSLIIGGIILF  159 (461)
T ss_pred             e-ehhhcCChhhHHHHHHHHHHHHHHHHHhhhHhhe
Confidence            5 8899888899999999999999888887766543

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=93.75  E-value=0.096  Score=47.85  Aligned_cols=149  Identities=16%  Similarity=0.121  Sum_probs=85.3

Q ss_pred             HHHHHHHHHhhhccchhHHHHhHHHHHHhcCCChhHHHHH---HHHHHHHHHHhHhhhhcc----cCccchhh-hhhHHH
Q 014286          228 VFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVF---VGIANLLGSVVAMVLMDK----LGRKALLQ-WSFFSM  299 (427)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~g~l~d~----~g~~~~~~-~~~~~~  299 (427)
                      ++....+....+++ +..-..|.+.+.+..|.+..+...+   .-+.+++.+++.|..+||    +||||..+ .+....
T Consensus        34 li~v~~ia~Gvqf~-wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i  112 (498)
T KOG0637|consen   34 LISVASIAAGVQFG-WALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLI  112 (498)
T ss_pred             HHHHHHHHHHHHHH-HHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHH
Confidence            33333344444443 4445556666677788887744333   335566778889999996    68766554 455555


Q ss_pred             HHHHHHHHHHhhcCC---CCCch------hHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhh-HHHHHHHHHHHH
Q 014286          300 AVSMAIQVAASSSYI---PGSAS------LYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAK-AMAVCMSVHWVI  369 (427)
Q Consensus       300 ~~~~~~~~~~~~~~~---~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~-~~g~~~~~~~~g  369 (427)
                      .++.+++.+......   ++...      ....++.+.+.-+.......|.=. +..|+..++.+.+ +.+.+..+..+|
T Consensus       113 ~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra-~L~Dl~~~d~~~~~Ans~f~~f~avG  191 (498)
T KOG0637|consen  113 AVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRA-LLADLARGDAKKTRANSVFSFFMAVG  191 (498)
T ss_pred             HHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHH-HHHHhccChhhhhccchhHHHHHHhc
Confidence            666666665442211   11111      112222223333333333345544 7888776666666 999999988888


Q ss_pred             HHHHHHHHH
Q 014286          370 NFFVGLLFL  378 (427)
Q Consensus       370 ~~~~~~~~g  378 (427)
                      +.+|=.+.+
T Consensus       192 nvLGY~~g~  200 (498)
T KOG0637|consen  192 NVLGYALGS  200 (498)
T ss_pred             ceeeeeccc
Confidence            888765554

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=93.68  E-value=2.8  Score=40.76  Aligned_cols=158  Identities=13%  Similarity=0.099  Sum_probs=93.3

Q ss_pred             HhHHHHHHhcCCChh---HHHHHHHHHHHHHHHhHhhhhcc-cCccchhhhhhHHHHHHHHHHHHHhhcCCC--------
Q 014286          248 YFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDK-LGRKALLQWSFFSMAVSMAIQVAASSSYIP--------  315 (427)
Q Consensus       248 ~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------  315 (427)
                      ....++....+....   ..............+++++++|- +||-+++.++.++..++..++.........        
T Consensus        59 nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~  138 (571)
T KOG1237|consen   59 NLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFK  138 (571)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCC
Confidence            334444444444433   33333444455667889999997 589899998888888886665554432210        


Q ss_pred             -C-----C-chhHHHHHHHHHHHHHHh-hcccchhhhhccCcCC----ccch--hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 014286          316 -G-----S-ASLYLSVGGMLMFVLTFA-LGAGPVPSLLLPEIFP----SRIR--AKAMAVCMSVHWVINFFVGLLFLRLL  381 (427)
Q Consensus       316 -~-----~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~p----~~~~--g~~~g~~~~~~~~g~~~~~~~~g~l~  381 (427)
                       .     . ......++...+.....+ .+.-|....+-+|-++    .+.+  ..-........+.|..++..+.-+.-
T Consensus       139 ~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq  218 (571)
T KOG1237|consen  139 PGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQ  218 (571)
T ss_pred             CCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhh
Confidence             0     0 111111222222222212 2334555557777776    2222  35566677777888888888888887


Q ss_pred             HHhccchhHHHHHHHHHHHHHHHH
Q 014286          382 EQLGPQLLYSIFGTFCLMAVAFVK  405 (427)
Q Consensus       382 ~~~g~~~~~~~~~~~~~~~~~~~~  405 (427)
                      ++.||...|.+..++..++.++..
T Consensus       219 ~~~~w~lgf~i~~~~~~lai~iF~  242 (571)
T KOG1237|consen  219 DNVGWKLGFGIPTVLNALAILIFL  242 (571)
T ss_pred             hcccceeeccHHHHHHHHHHHHHH
Confidence            889999999888887777665553

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=93.54  E-value=1.2  Score=40.69  Aligned_cols=131  Identities=15%  Similarity=0.124  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcccchhh
Q 014286          264 ANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPS  343 (427)
Q Consensus       264 ~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (427)
                      +...-.+-.++..++..++.+|+.-+.-......+..+++++..+..+        .+.-+++..+.....+.+-.....
T Consensus        64 Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~--------v~~~l~Gv~las~ssg~GE~tfL~  135 (402)
T PF02487_consen   64 VLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPS--------VWVRLLGVVLASLSSGLGEVTFLS  135 (402)
T ss_pred             HHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccc--------hhHHHHHHHHHhhhhhhhHHHHHH
Confidence            455555666777788899999887554455555566667666655332        234455555555544443333222


Q ss_pred             hhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHHHHHhcc
Q 014286          344 LLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLG--PQLLYSIFGTFCLMAVAFVKRNVV  409 (427)
Q Consensus       344 ~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~  409 (427)
                       + ...+|+.    ..+-....-..++.+|+...-.+.+ .|  .+..+.+...+.++..+..++.++
T Consensus       136 -l-t~~y~~~----~l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~~L~  196 (402)
T PF02487_consen  136 -L-THFYGKS----SLSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFFLLP  196 (402)
T ss_pred             -H-HHhcCcc----ccccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence             3 3455532    2333333334456666665555544 55  355666655555444444444443

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=93.44  E-value=0.26  Score=41.81  Aligned_cols=154  Identities=15%  Similarity=0.128  Sum_probs=70.6

Q ss_pred             HHHHhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHH
Q 014286          252 SVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGML  328 (427)
Q Consensus       252 ~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (427)
                      ++.+.+|+..+   ..+.......++...+.|-+.||.|||+..+.-++...++    .......   +  ...+.++-.
T Consensus        62 yLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLs----CiTKhSp---q--YkVLmVGR~  132 (454)
T KOG4332|consen   62 YLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILS----CITKHSP---Q--YKVLMVGRV  132 (454)
T ss_pred             eeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHH----HHhhcCC---c--eEEEeehhh
Confidence            44455666554   2333222334455566788999999998665544433333    3322111   0  011222222


Q ss_pred             HHHHHHhhcccch-hhhhccCcC-----CccchhhHHHHHHHHH-HHHHHHHHHHHHHHHHHhc--cchhHHHHHHHHHH
Q 014286          329 MFVLTFALGAGPV-PSLLLPEIF-----PSRIRAKAMAVCMSVH-WVINFFVGLLFLRLLEQLG--PQLLYSIFGTFCLM  399 (427)
Q Consensus       329 ~~~~~~~~~~~~~-~~~~~~~~~-----p~~~~g~~~g~~~~~~-~~g~~~~~~~~g~l~~~~g--~~~~~~~~~~~~~~  399 (427)
                      +.++.-+..+... .+ ++.|..     |.+......+=...++ .+-.+++...+..+.|.++  +-.+|-..+.+..+
T Consensus       133 LGGiaTsLLFSaFEsW-liaEHnekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLai  211 (454)
T KOG4332|consen  133 LGGIATSLLFSAFESW-LIAEHNEKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLAI  211 (454)
T ss_pred             hhhHHHHHHHHHHHHH-HHHHhhhccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHH
Confidence            2222222222111 23 666653     2222222222222222 2344555555556666654  55667665555555


Q ss_pred             HHHHHHHhccCCCCCC
Q 014286          400 AVAFVKRNVVETKGKS  415 (427)
Q Consensus       400 ~~~~~~~~~~~~~~~~  415 (427)
                      +..+...-..|..++.
T Consensus       212 gmAvil~~W~ENygdp  227 (454)
T KOG4332|consen  212 GMAVILSSWSENYGDP  227 (454)
T ss_pred             HHHHHHhhhhhccCCh
Confidence            5555554455555443

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=93.35  E-value=7.1  Score=36.67  Aligned_cols=112  Identities=13%  Similarity=0.033  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHHHHHhHhhhhcccCcc-chhhhhhHHHHHHHHHHHHHhhcCC-C---CCchhHHHHHHHHHHHHHHhhc
Q 014286          263 LANVFVGIANLLGSVVAMVLMDKLGRK-ALLQWSFFSMAVSMAIQVAASSSYI-P---GSASLYLSVGGMLMFVLTFALG  337 (427)
Q Consensus       263 ~~~~~~~~~~~~~~~~~g~l~d~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~  337 (427)
                      .....++++-.+|+.+..+.. +-++| +.+.+..+.=.+...++.+...... .   .-.+.+..++..++++...+..
T Consensus       311 i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnGy~  389 (437)
T TIGR00939       311 ICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGYL  389 (437)
T ss_pred             HHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhhHH
Confidence            566777888888888665431 11222 1222222222222222222111100 0   0012234444455555444433


Q ss_pred             ccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHH
Q 014286          338 AGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLL  376 (427)
Q Consensus       338 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~  376 (427)
                      . .....+..+..++++|-.+..+...+..+|-.+|..+
T Consensus       390 ~-s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l  427 (437)
T TIGR00939       390 G-SLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVL  427 (437)
T ss_pred             H-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2 3333367777788888888888888877777777765

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=93.23  E-value=7.7  Score=36.72  Aligned_cols=66  Identities=8%  Similarity=-0.053  Sum_probs=47.5

Q ss_pred             hhhhhhhccCCCC---chhHHHHHHHHHHHHHHHH-HHhHHhhhcccchhHHHHHhhHHHHHHHHHHHhh
Q 014286           73 PLESISLDLGFNG---NTLAEGLVVSMCLGGAFIG-STLSGWIADGVGRRRAFQLCALPMIIGASISATT  138 (427)
Q Consensus        73 ~~~~i~~~~~~~~---~~~~~g~~~s~~~l~~~~~-~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~  138 (427)
                      ++-.+++.+.++.   ......++.+...+..++. .++.+++++|++|++++-.....+....+++++.
T Consensus        25 iLR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~v   94 (472)
T TIGR00769        25 ILRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFV   94 (472)
T ss_pred             HHHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHH
Confidence            4556667766532   2233478888877777666 8999999999999999988777776666665553

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=92.68  E-value=4.2  Score=38.68  Aligned_cols=109  Identities=11%  Similarity=-0.028  Sum_probs=67.1

Q ss_pred             HHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHh--hcCCCCCch---------------------hHHHHHHHHH
Q 014286          273 LLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAAS--SSYIPGSAS---------------------LYLSVGGMLM  329 (427)
Q Consensus       273 ~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---------------------~~~~~~~~~~  329 (427)
                      ++...+..++++++++.++.-.........+.++++..  +....+...                     .|... ...+
T Consensus        73 ~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~s-lfYv  151 (491)
T PF03219_consen   73 ILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFS-LFYV  151 (491)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHH-HHHH
Confidence            34456678999999998877665555555554444432  111111110                     01000 1111


Q ss_pred             HHHHHhhc-ccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014286          330 FVLTFALG-AGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLE  382 (427)
Q Consensus       330 ~~~~~~~~-~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~  382 (427)
                      ..=.++.. ..-+.+.++.|+++.++..+-.++.....++|..+++.+...+.+
T Consensus       152 ~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~  205 (491)
T PF03219_consen  152 MAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS  205 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11111211 223567799999999999999999999999999999999888777

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=92.20  E-value=10  Score=35.71  Aligned_cols=43  Identities=14%  Similarity=0.063  Sum_probs=34.2

Q ss_pred             hhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014286          341 VPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQ  383 (427)
Q Consensus       341 ~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~  383 (427)
                      ...++-+.+..|..-|+.+.+.|++.|+|+---..+.=++.|.
T Consensus       425 ai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~  467 (544)
T PF13000_consen  425 AIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDY  467 (544)
T ss_pred             HHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhh
Confidence            3344777888889999999999999999987777776666653

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=91.31  E-value=9.1  Score=35.08  Aligned_cols=27  Identities=15%  Similarity=0.029  Sum_probs=13.3

Q ss_pred             HHHHHhhhccchhHHHHhHHHHHHhcC
Q 014286          232 STLFALQQLSGINAIFYFSSSVFKSAG  258 (427)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~g  258 (427)
                      .++........++....-.+++.+++.
T Consensus        23 ~~llGiG~LlpWN~fiTa~~y~~~~~~   49 (406)
T KOG1479|consen   23 FLLLGIGTLLPWNMFITASDYYYYRFP   49 (406)
T ss_pred             HHHHhcccccchHhhhccHHHHHhhcC
Confidence            333344444445555555566655543

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=91.26  E-value=0.06  Score=50.17  Aligned_cols=89  Identities=17%  Similarity=0.063  Sum_probs=77.3

Q ss_pred             hhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHhhHHHHHHHHHHHhhhhhHHHHHHHHHHhhhccc
Q 014286           78 SLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGL  157 (427)
Q Consensus        78 ~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~  157 (427)
                      .||.+-  .+...|.....-..+-.+.-++.+++.+|+|+-+++.+++.+..+=.+..+..+|.|+.+..-++||+..+.
T Consensus       398 led~~~--~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~al  475 (618)
T KOG3762|consen  398 LEDLGG--IKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHAL  475 (618)
T ss_pred             HhhcCC--cceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHH
Confidence            455553  233337777777888888899999999999999999999999999999999999999999999999999999


Q ss_pred             cccceeecccC
Q 014286          158 GPTVAALYVTE  168 (427)
Q Consensus       158 ~~~~~~~~i~~  168 (427)
                      .+.+..+|+..
T Consensus       476 iWaa~~sY~s~  486 (618)
T KOG3762|consen  476 IWAAIISYASH  486 (618)
T ss_pred             HHHHHHHHHHh
Confidence            99999998886

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=87.38  E-value=21  Score=32.61  Aligned_cols=78  Identities=14%  Similarity=0.166  Sum_probs=37.0

Q ss_pred             HHHHHHHHHhhhccchhHHHHhHHHHHHhcCCChhHHHHHHHHHHHH--HHHhHhhhhc-----ccCccchhhh-hhHHH
Q 014286          228 VFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLL--GSVVAMVLMD-----KLGRKALLQW-SFFSM  299 (427)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~g~l~d-----~~g~~~~~~~-~~~~~  299 (427)
                      +.+..+++..+.. ...... -.|.+++..+.+-.-. ..+.+...+  --++...+.|     |+|||+..++ +..+.
T Consensus        33 illLl~LYllQGi-P~GL~~-~iP~lL~ak~vSyt~~-a~fS~ay~P~sLKllWaPiVDs~y~k~~GrrksWvvp~q~ll  109 (510)
T KOG3574|consen   33 ILLLLFLYLLQGI-PLGLIG-AIPLLLQAKGVSYTSQ-AIFSFAYWPFSLKLLWAPIVDSVYSKRFGRRKSWVVPCQYLL  109 (510)
T ss_pred             HHHHHHHHHHcCC-chhHhh-hhHHHhcCCCcchhhh-hhhhhhhhHHHHHHHHHhhhHHHHHHhhccccceeeehHHHH
Confidence            3333444443332 344444 6777777666654411 111122222  2345666677     9998876443 34444


Q ss_pred             HHHHHHHHH
Q 014286          300 AVSMAIQVA  308 (427)
Q Consensus       300 ~~~~~~~~~  308 (427)
                      +..+..+..
T Consensus       110 G~~mllLs~  118 (510)
T KOG3574|consen  110 GLFMLLLSY  118 (510)
T ss_pred             HHHHHHHhh
Confidence            444444443

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=86.41  E-value=20  Score=33.77  Aligned_cols=29  Identities=14%  Similarity=0.150  Sum_probs=13.8

Q ss_pred             HHHHHHHHHhHhhhhcccCccchhhhhhH
Q 014286          269 GIANLLGSVVAMVLMDKLGRKALLQWSFF  297 (427)
Q Consensus       269 ~~~~~~~~~~~g~l~d~~g~~~~~~~~~~  297 (427)
                      .+..++..+....+..|+..+.-+..+.+
T Consensus        55 ~v~~l~~~~~~~~~~~~i~~~~Ri~~~lv   83 (437)
T TIGR00939        55 QLPSLLFNSLNLFLIFRIPVTVRLLGGLV   83 (437)
T ss_pred             HHHHHHHHHHHHHHhhccCccchhHHHHH
Confidence            34444444555555666654333333433

>KOG2881 consensus Predicted membrane protein [Function unknown]

Probab=85.81  E-value=14  Score=31.29  Aligned_cols=28  Identities=14%  Similarity=0.057  Sum_probs=18.1

Q ss_pred             hhhcccchhHHHHHhhHHHHHHHHHHHh
Q 014286          110 WIADGVGRRRAFQLCALPMIIGASISAT  137 (427)
Q Consensus       110 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~  137 (427)
                      .++=||+|+.++..++....+-+++...
T Consensus        91 lmAmr~~R~~Vf~Ga~~AL~lMTiLS~~  118 (294)
T KOG2881|consen   91 LMAMRYPRLTVFSGAMSALALMTILSVL  118 (294)
T ss_pred             HHHhhccchhHHHHHHHHHHHHHHHHHH
Confidence            4556888888887766555555555443

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=84.77  E-value=36  Score=32.18  Aligned_cols=112  Identities=11%  Similarity=-0.070  Sum_probs=69.5

Q ss_pred             HHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCC--CCCc-----------h-----------hHHHHHH
Q 014286          271 ANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYI--PGSA-----------S-----------LYLSVGG  326 (427)
Q Consensus       271 ~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-----------~-----------~~~~~~~  326 (427)
                      +.++..++..++.+++.+.++...........++++++......  .+.+           .           -|.....
T Consensus        74 ~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~  153 (509)
T COG3202          74 SAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLF  153 (509)
T ss_pred             HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHH
Confidence            34556677888999999888877666666555555555432111  0000           0           0221111


Q ss_pred             HHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014286          327 MLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLE  382 (427)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~  382 (427)
                      ..+.-.-......-+.+..+.|....++..+-.++.+...+++..++..+..++..
T Consensus       154 Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k  209 (509)
T COG3202         154 YIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSK  209 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            11111111112233556688899999999999999999999999999988888765

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=83.79  E-value=33  Score=30.90  Aligned_cols=23  Identities=22%  Similarity=0.296  Sum_probs=13.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 014286          359 MAVCMSVHWVINFFVGLLFLRLL  381 (427)
Q Consensus       359 ~g~~~~~~~~g~~~~~~~~g~l~  381 (427)
                      .+.....-++|+..+..+..++.
T Consensus       141 ~s~vl~~DYLGal~~gLl~p~ll  163 (508)
T COG4262         141 GSRVLTLDYLGALAGGLLWPFLL  163 (508)
T ss_pred             hhhhhhhHhhhhhhHHHHHHHHH
Confidence            33344446677776666665543

>KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism]

Probab=83.66  E-value=20  Score=32.54  Aligned_cols=41  Identities=10%  Similarity=0.155  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Q 014286          360 AVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMA  400 (427)
Q Consensus       360 g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~  400 (427)
                      +....+-..-..+.|.+.|.+.+..+.+..-..+++..++.
T Consensus       178 atir~iDq~tn~Lapv~tg~Iitfvsl~~~~g~f~~w~~vs  218 (503)
T KOG2601|consen  178 ATIRGIDQSTNLLAPVITGLIITFVSLRASAGTFAAWALVS  218 (503)
T ss_pred             hhhhhhhhhhhchhhhhhcccceeechhhhhhhhHHHHHHH
Confidence            33334444567899999999988777776555555555553

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=81.05  E-value=19  Score=34.15  Aligned_cols=44  Identities=16%  Similarity=0.160  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHHHHhHhhhhcccCccchhhh-hhHHHHHHHHHHH
Q 014286          264 ANVFVGIANLLGSVVAMVLMDKLGRKALLQW-SFFSMAVSMAIQV  307 (427)
Q Consensus       264 ~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~-~~~~~~~~~~~~~  307 (427)
                      ...++.+=.+=+.++=...++|+||||..++ ...+.++.++.+.
T Consensus        45 a~~PfSlKlLWaPiVDs~y~~~~GRRKSWiiP~Q~l~g~~m~~l~   89 (544)
T PF13000_consen   45 ASYPFSLKLLWAPIVDSVYSKRIGRRKSWIIPIQYLSGILMLYLS   89 (544)
T ss_pred             eechhHHHHhhhhhhhhhcccccCCcchhhhHHHHHHHHHHHHHH
Confidence            3344444333344444556778999876543 4444444444443

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	427
4gby_A	491	The Structure Of The Mfs (Major Facilitator Superfa		5e-31

>pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491

Iteration: 1
 Score =  131 bits (330), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 89/270 (32%), Positives = 136/270 (50%), Gaps = 17/270 (6%)
Query: 166 VTESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHF 225
           V ESP WL  +G+  +AE    K++G +    ++ E+      D G       L++G   
Sbjct: 220 VPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIKH--SLDHGRKTGGRLLMFG--V 275
Query: 226 RVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLA---NVFVGIANLLGSVVAMVL 282
            V+ IG  L   QQ  GIN + Y++  VFK+ G S+ +A    + VG+ NL  +V+A++ 
Sbjct: 276 GVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMT 335
Query: 283 MDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVP 342
           +DK GRK L       MA+ M     A  +  PG  +L      ML +V  FA+  GPV 
Sbjct: 336 VDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALL----SMLFYVAAFAMSWGPVC 391
Query: 343 SLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGXXXXXXXXXXXXXX------XYSIFGTF 396
            +LL EIFP+ IR KA+A+ ++  W+ N+FV                      Y I+G  
Sbjct: 392 WVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCM 451
Query: 397 CLMAVAFVKRNVVETKGKSLQEIEIALLPQ 426
            ++A  F+ + V ETKGK+L+E+E    P+
Sbjct: 452 GVLAALFMWKFVPETKGKTLEELEALWEPE 481

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	427
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	3e-05

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Length = 438

 Score = 44.9 bits (106), Expect = 3e-05
 Identities = 27/142 (19%), Positives = 49/142 (34%), Gaps = 5/142 (3%)

Query: 29  TTALVQNGTEVENTNPSWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTL 88
           T+   Q+   V+      +       +     FL+     + +  L        F     
Sbjct: 4   TSIQTQSYRAVDKDAGQSRSYIIPFALLCSLFFLWAVANNLND-ILLPQ-FQQAFTLTNF 61

Query: 89  AEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASI---SATTRNLIGML 145
             GL+ S    G FI    +G +   +  +           +GA++   +A   N    L
Sbjct: 62  QAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFL 121

Query: 146 LGRFVVGTGMGLGPTVAALYVT 167
           +G F++  G+G   T A  +VT
Sbjct: 122 VGLFIIAAGLGCLETAANPFVT 143

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	427
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	100.0
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.97
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.97
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.94
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.93
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.91
2xut_A	524	Proton/peptide symporter family protein; transport	99.86
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.56
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.49
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.48
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.43
2xut_A	524	Proton/peptide symporter family protein; transport	99.38
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	98.98
2cfq_A	417	Lactose permease; transport, transport mechanism,	98.83

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=100.00  E-value=4.1e-40  Score=312.18  Aligned_cols=374  Identities=31%  Similarity=0.515  Sum_probs=282.2

Q ss_pred             CchhHHHHHHHHHHhhhhhccccccccchhhhhhhccCCCC------chhHHHHHHHHHHHHHHHHHHhHHhhhcccchh
Q 014286           45 SWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNG------NTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRR  118 (427)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr  118 (427)
                      +.+..+.+.++++++.+++++|.++++..+|.+.++++.+.      ++.+.|++.+++.+|..+|++++|+++||+|||
T Consensus         6 ~~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk   85 (491)
T 4gc0_A            6 NSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRR   85 (491)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHH
T ss_pred             ChHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence            34455666777889999999999999999999998875421      234468999999999999999999999999999


Q ss_pred             HHHHHhhHHHHHHHHHHH------------------hhhhhHHHHHHHHHHhhhccccccceeeccc-------------
Q 014286          119 RAFQLCALPMIIGASISA------------------TTRNLIGMLLGRFVVGTGMGLGPTVAALYVT-------------  167 (427)
Q Consensus       119 ~~l~~~~~~~~~~~~~~~------------------~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~-------------  167 (427)
                      ++++++.+++.+++++++                  +++|+++++++|+++|+|.|+..+....++.             
T Consensus        86 ~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~  165 (491)
T 4gc0_A           86 DSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVS  165 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHH
Confidence            999999999999999999                  4789999999999999999988777777665             


Q ss_pred             --------------------------------------------------------CCchhhhhcCChHHHHHHHHHHhC
Q 014286          168 --------------------------------------------------------ESPHWLYKKGRTAEAEAEFEKLLG  191 (427)
Q Consensus       168 --------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~  191 (427)
                                                                              |||+|+..+++.+++...+.....
T Consensus       166 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~  245 (491)
T 4gc0_A          166 FNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMG  245 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcC
Confidence                                                                    677777777777776666555432


Q ss_pred             CCchhhHHHHHhhhhcCCCCCcchhHhhhcccchhHHHHHHHHHHhhhccchhHHHHhHHHHHHhcCCChh---HHHHHH
Q 014286          192 GSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSG---LANVFV  268 (427)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~  268 (427)
                      .....++..+.++..+.+ ++.......   ...+...+......+.++...+...+|.+.+.+..+.+..   ......
T Consensus       246 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (491)
T 4gc0_A          246 NTLATQAVQEIKHSLDHG-RKTGGRLLM---FGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIV  321 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHH-HHHTTHHHH---SCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHhh-hhhhhHHHH---hcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHH
Confidence            221111111111110000 000111111   2233445555556666667788888899999888887765   455667


Q ss_pred             HHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcccchhhhhccC
Q 014286          269 GIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPE  348 (427)
Q Consensus       269 ~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (427)
                      ++..+++.++++++.||+|||+.+..+.....++.+.+......    ....+..+....++..++..+..++.+.+.+|
T Consensus       322 ~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E  397 (491)
T 4gc0_A          322 GVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT----QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSE  397 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhc----ccchHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            78888999999999999999999999888888877766655432    22233445555666667777888888889999


Q ss_pred             cCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHH------HhccchhHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHh
Q 014286          349 IFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLE------QLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQEIEIA  422 (427)
Q Consensus       349 ~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (427)
                      ++|++.|+++.|+.+.++++++++++.+.+.+.+      ..++...|++++++++++.++.+++.||||+|++||+|+.
T Consensus       398 ~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~  477 (491)
T 4gc0_A          398 IFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEAL  477 (491)
T ss_dssp             SSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGG
T ss_pred             hCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHH
Confidence            9999999999999999999999999988776543      3456678889999999999999899999999999999877


Q ss_pred             hCCC
Q 014286          423 LLPQ  426 (427)
Q Consensus       423 ~~~~  426 (427)
                      .+++
T Consensus       478 f~~~  481 (491)
T 4gc0_A          478 WEPE  481 (491)
T ss_dssp             TC--
T ss_pred             hCCC
Confidence            6553

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.97  E-value=3.5e-31  Score=248.07  Aligned_cols=343  Identities=11%  Similarity=0.080  Sum_probs=237.1

Q ss_pred             hhHHHHHHHHHHhhhhhccccccccchhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHhhH
Q 014286           47 KLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCAL  126 (427)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~  126 (427)
                      +..+..+...+++.+..+++...+.+.+|.+.+++ .+.++.  |++.+++.++..++++++|+++||+|||++++++.+
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~--g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~  100 (451)
T 1pw4_A           24 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDL--GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLI  100 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCH--HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHH--HHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHH
Confidence            34456677788888888899899999999999999 877776  999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHh----hhhhHHHHHHHHHHhhhccccccceeecccCCchhhhhcCChHHHHHHHH---------------
Q 014286          127 PMIIGASISAT----TRNLIGMLLGRFVVGTGMGLGPTVAALYVTESPHWLYKKGRTAEAEAEFE---------------  187 (427)
Q Consensus       127 ~~~~~~~~~~~----~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~---------------  187 (427)
                      +++++.+++++    ++|++.++++|+++|++.+...+...+++.|.    ...++...+.....               
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~----~~~~~r~~~~~~~~~~~~~g~~~g~~~~~  176 (451)
T 1pw4_A          101 LAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHW----WSQKERGGIVSVWNCAHNVGGGIPPLLFL  176 (451)
T ss_dssp             HHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTT----CTTTHHHHHHHHHHHHHHHHHTSHHHHHH
T ss_pred             HHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHH----CCchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999    99999999999999999999999888888862    11111111111100               


Q ss_pred             ---HHhC-CCch---hh---------HHHHHhhhhcC-------C------------CCCcch-----hHhhhcccchhH
Q 014286          188 ---KLLG-GSHV---KS---------SLAELSKLDRG-------D------------DGDIVK-----FEELLYGRHFRV  227 (427)
Q Consensus       188 ---~~~~-~~~~---~~---------~~~~~~~~~~~-------~------------~~~~~~-----~~~~~~~~~~~~  227 (427)
                         ...+ ....   ..         .....++.++.       +            ++++.+     .++.++++..+.
T Consensus       177 ~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (451)
T 1pw4_A          177 LGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWY  256 (451)
T ss_dssp             HHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchhhhhcccccccchHHHHHcCHHHHH
Confidence               0001 0000   00         00000000000       0            000111     344555555554


Q ss_pred             HHHHHHHHHhhhccchhHHHHhHHHHHHh-cCCChh---HHHHHHHHHHHHHHHhHhhhhccc--CccchhhhhhHHHH-
Q 014286          228 VFIGSTLFALQQLSGINAIFYFSSSVFKS-AGLSSG---LANVFVGIANLLGSVVAMVLMDKL--GRKALLQWSFFSMA-  300 (427)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~--g~~~~~~~~~~~~~-  300 (427)
                      ..+..++...    .......+.+.+.++ .|.+..   .......++.+++.++.+++.||+  +||+.+..+..+.. 
T Consensus       257 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~  332 (451)
T 1pw4_A          257 IAIANVFVYL----LRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVT  332 (451)
T ss_dssp             HHHHHHHHHH----HHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH----HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence            4444433332    334444556666655 788776   566777788899999999999999  99888877666555 


Q ss_pred             HHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHH-HHHHHHHHHHH
Q 014286          301 VSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWV-INFFVGLLFLR  379 (427)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~-g~~~~~~~~g~  379 (427)
                      ++.+++...      .+.+.+.......+.+.+.+ ...+....+..|.+|+++|+++.|+.+.+.++ |..++|.+.|.
T Consensus       333 ~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~  405 (451)
T 1pw4_A          333 IATIVYWMN------PAGNPTVDMICMIVIGFLIY-GPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGY  405 (451)
T ss_dssp             HHHHHTTSC------CTTCHHHHHHHHHHHHHHHT-HHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHh------cccCHHHHHHHHHHHHHHHh-chHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            443333221      11223333344444444333 23344456889999999999999999999999 99999999999


Q ss_pred             HHHHhccchhHHHHHHHHHHHHHHHHHh
Q 014286          380 LLEQLGPQLLYSIFGTFCLMAVAFVKRN  407 (427)
Q Consensus       380 l~~~~g~~~~~~~~~~~~~~~~~~~~~~  407 (427)
                      +.+..|+...|++.+++.+++.++....
T Consensus       406 l~~~~g~~~~~~~~~~~~~~~~~~~~~~  433 (451)
T 1pw4_A          406 TVDFFGWDGGFMVMIGGSILAVILLIVV  433 (451)
T ss_dssp             HHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999988888887776665544

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.97  E-value=7.4e-30  Score=238.14  Aligned_cols=329  Identities=13%  Similarity=0.081  Sum_probs=229.9

Q ss_pred             HHHHHHHHhhhhhccccccccchhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHhhHHHHH
Q 014286           51 PHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMII  130 (427)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~  130 (427)
                      ..+..+++..+..+++.....+.+|.+.+++|++.++.  |++.+.+.+++.++++++|+++||+|||++++++.+++++
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~--g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~  103 (438)
T 3o7q_A           26 IPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQA--GLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYAL  103 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHH--HHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHH
Confidence            34556667777778888889999999999999877766  9999999999999999999999999999999999999999


Q ss_pred             HHHHH---HhhhhhHHHHHHHHHHhhhccccccceeecccCCchhhhhcCChHHHHHHHH----------HH-----h-C
Q 014286          131 GASIS---ATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTESPHWLYKKGRTAEAEAEFE----------KL-----L-G  191 (427)
Q Consensus       131 ~~~~~---~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~----------~~-----~-~  191 (427)
                      +.+++   ++++|++.++++|+++|++.+...+....++.|.    ..+++...+.....          ..     . .
T Consensus       104 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~----~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~  179 (438)
T 3o7q_A          104 GAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVL----GPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILS  179 (438)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS----SCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHT
T ss_pred             HHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHH----cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999   8899999999999999999999998888888762    11112111111000          00     0 0


Q ss_pred             CCc-------------------------hhhH-------------HH-H--Hhhhh------cCCCCCcchhHhhhcccc
Q 014286          192 GSH-------------------------VKSS-------------LA-E--LSKLD------RGDDGDIVKFEELLYGRH  224 (427)
Q Consensus       192 ~~~-------------------------~~~~-------------~~-~--~~~~~------~~~~~~~~~~~~~~~~~~  224 (427)
                      ...                         .+..             .. .  .++.+      +++++.+.+++++++++.
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (438)
T 3o7q_A          180 NVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAKQGSFSASLSRLARIRH  259 (438)
T ss_dssp             SSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCSSTTSHHHHHHHHTTCSH
T ss_pred             ccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccccccchhhhHHHHHhChH
Confidence            000                         0000             00 0  00000      011112245677888887


Q ss_pred             hhHHHHHHHHHHhhhccchhHHHHhHHHH-HHh-cCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHH
Q 014286          225 FRVVFIGSTLFALQQLSGINAIFYFSSSV-FKS-AGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSM  299 (427)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~  299 (427)
                      .+...+..++....    ......+.+.+ .++ .|.+..   .......++.+++.++.+++.||++||+.+..+.++.
T Consensus       260 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~  335 (438)
T 3o7q_A          260 WRWAVLAQFCYVGA----QTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIA  335 (438)
T ss_dssp             HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH----HHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence            77766655554442    33333444544 544 487766   5666677888999999999999999999998888877


Q ss_pred             HHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 014286          300 AVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLR  379 (427)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~  379 (427)
                      .++.+++.....         ........+.+.+.+ ...+...++..|.+|++ ++.+.++.. ...+|+.++|.+.|.
T Consensus       336 ~~~~~~~~~~~~---------~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~  403 (438)
T 3o7q_A          336 MALCLISAFAGG---------HVGLIALTLCSAFMS-IQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGF  403 (438)
T ss_dssp             HHHHHHHHHCCH---------HHHHHHHHHHHHHHT-THHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCC---------cHHHHHHHHHHHHHH-HHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHH
Confidence            777666554321         112233334444333 33466666878888866 888888877 677999999999999


Q ss_pred             HHHHhc-cchhHHHHHHHHHHHH
Q 014286          380 LLEQLG-PQLLYSIFGTFCLMAV  401 (427)
Q Consensus       380 l~~~~g-~~~~~~~~~~~~~~~~  401 (427)
                      +.|..| +...|.+.+++.++..
T Consensus       404 l~~~~g~~~~~~~~~~~~~~~~~  426 (438)
T 3o7q_A          404 VSDAAGNIPTAELIPALCFAVIF  426 (438)
T ss_dssp             HHHHHTSSGGGGHHHHHHHHHHH
T ss_pred             HHHHhcchHHHHHHHHHHHHHHH
Confidence            999999 9888887655544443

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.94  E-value=1.9e-26  Score=218.22  Aligned_cols=322  Identities=14%  Similarity=0.109  Sum_probs=195.7

Q ss_pred             cCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcc-cchhHHHHHhhHHHHHHHHHHHhhhhhHHHHHHHHHHhhhccccc
Q 014286           81 LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG-VGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGP  159 (427)
Q Consensus        81 ~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~  159 (427)
                      +|.+.++.  |++.+.+.++..++++++|+++|| +|||+++..+.++.+++.+++++++|++.++++|+++|++.+...
T Consensus        49 ~~~s~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~  126 (491)
T 4aps_A           49 LHITRATA--ASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLK  126 (491)
T ss_dssp             CCSCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcc
Confidence            88765555  999999999999999999999999 899999999999999999999999999999999999999999999


Q ss_pred             cceeecccCCchhhhhcCC--hHHHHHHHH------HHhC----------CCch--------------hhHHHHHhhhhc
Q 014286          160 TVAALYVTESPHWLYKKGR--TAEAEAEFE------KLLG----------GSHV--------------KSSLAELSKLDR  207 (427)
Q Consensus       160 ~~~~~~i~~~~~~~~~~~~--~~~~~~~~~------~~~~----------~~~~--------------~~~~~~~~~~~~  207 (427)
                      +...+++.|    ....++  ...+.....      ...+          ..+.              .......++..+
T Consensus       127 ~~~~~~~~~----~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~  202 (491)
T 4aps_A          127 PNVSTLVGT----LYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLD  202 (491)
T ss_dssp             HHHHHHHHH----HSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             chHHHHHHH----HcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCccccc
Confidence            988888886    222222  111111100      0000          0000              000000000000


Q ss_pred             ---CCCC---CcchhHh---------------------------------------------------------hhcccc
Q 014286          208 ---GDDG---DIVKFEE---------------------------------------------------------LLYGRH  224 (427)
Q Consensus       208 ---~~~~---~~~~~~~---------------------------------------------------------~~~~~~  224 (427)
                         ++.+   ++...++                                                         ..+++.
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (491)
T 4aps_A          203 PHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRV  282 (491)
T ss_dssp             SCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------C
T ss_pred             ccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence               0000   0000000                                                         001111


Q ss_pred             --hhHHHHHHHHHHhhhccchhHHHHhHHHHH-HhcCCC---hhHHHHHHHHHHHHHHHhHhhhhcccCccchhh-----
Q 014286          225 --FRVVFIGSTLFALQQLSGINAIFYFSSSVF-KSAGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQ-----  293 (427)
Q Consensus       225 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~---~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~-----  293 (427)
                        .....+...+.........    .+.+.+. +..+.+   .+.......+..+++.++.+++.||++||+...     
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~  358 (491)
T 4aps_A          283 VSYIPLFIAAVLFWAIEEQGS----VVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFA  358 (491)
T ss_dssp             TTHHHHHHHHHHHHHHHGGGG----THHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhcc----HHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHH
Confidence              1112222222222222222    2233333 223433   446777788888889999999999999987655     


Q ss_pred             hhhHHHHHHHHHHHHHhhcCC-CCCchhHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHH
Q 014286          294 WSFFSMAVSMAIQVAASSSYI-PGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFF  372 (427)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~  372 (427)
                      .+..+.+++..++........ ..+.+.+.......+.+.+.+. ..+....++.|.+|++.|+++.|+.+...++|..+
T Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i  437 (491)
T 4aps_A          359 VGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEML-ISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSAL  437 (491)
T ss_dssp             HHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHT-TTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHH-HhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence            666666666655554432111 1122333444444455554443 34555669999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhccCCCCC
Q 014286          373 VGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGK  414 (427)
Q Consensus       373 ~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (427)
                      +|.+.+.+.+ .++...|.+.+++++++.++.+...++.+++
T Consensus       438 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  478 (491)
T 4aps_A          438 NAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSKRIQGL  478 (491)
T ss_dssp             HHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC-------
T ss_pred             HHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999887765 4677788888888877777766665554443

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.93  E-value=5.9e-27  Score=213.85  Aligned_cols=322  Identities=16%  Similarity=0.130  Sum_probs=210.1

Q ss_pred             HHHHHhhhhhccccccccchhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHhhHHHHHHHH
Q 014286           54 LVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGAS  133 (427)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~  133 (427)
                      ..+++..+...++.....+.+|.+.+++|.+.++.  |++.+.+.++..++++++|+++||+|||+++..+.++.+++.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~   80 (375)
T 2gfp_A            3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAV--QSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATL   80 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHH--HHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHH
Confidence            45566667777888888999999999999876665  9999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhhHHHHHHHHHHhhhccccccceeecccCCchhhhhcCChHHHHHHHHH------HhC-------CCchhh---
Q 014286          134 ISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTESPHWLYKKGRTAEAEAEFEK------LLG-------GSHVKS---  197 (427)
Q Consensus       134 ~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~------~~~-------~~~~~~---  197 (427)
                      ++++++|++.++++|+++|++.+...+....++.|    ...++++.........      ..+       ......   
T Consensus        81 ~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~  156 (375)
T 2gfp_A           81 VAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRD----LYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRAC  156 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHH----HCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHH
Confidence            99999999999999999999999998888888876    2222221111111000      000       000000   


Q ss_pred             -----------------HHHHHhhhhcCCCCCcchhHhhhcccchhHHHHHHHHHHhhhccchhHHHHhHHHHH-HhcCC
Q 014286          198 -----------------SLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVF-KSAGL  259 (427)
Q Consensus       198 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~  259 (427)
                                       ..++.++.++++++.+.++++.+++|..+...+..++....    ......+.|.+. +..|.
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~  232 (375)
T 2gfp_A          157 YLFLLVLCAGVTFSMARWMPETRPVDAPRTRLLTSYKTLFGNSGFNCYLLMLIGGLAG----IAAFEACSGVLMGAVLGL  232 (375)
T ss_dssp             HHHHHHHHHHHHCCCCCSSCCCSTTTCCCCCTTTCSTHHHHHHHHHHHHHHHHHHHHH----HHHHHHHCSCSSHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHCcccCCCCcccccHHHHHHHHhcCcchHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhCC
Confidence                             00000111111122334566777777666655554444332    222223333332 22454


Q ss_pred             Chh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHH-HHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHh
Q 014286          260 SSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFS-MAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFA  335 (427)
Q Consensus       260 ~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (427)
                      +..   .......++.+++.++.+++.||.+++  +..+... ...+...+.....    ...+.+.......+.+.+.+
T Consensus       233 ~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~g~~~~  306 (375)
T 2gfp_A          233 SSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLMWIPDWF----GVMNVWTLLVPAALFFFGAG  306 (375)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSSSHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhh----ccccHHHHHHHHHHHHHHHH
Confidence            443   566667788889999999999998872  2222222 2222221111110    00112333344445555554


Q ss_pred             hcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHH
Q 014286          336 LGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIF  393 (427)
Q Consensus       336 ~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~  393 (427)
                      .. .+....+..|.+| ++||++.|+.+...++|..++|.+.|.+.+..++...+.+.
T Consensus       307 ~~-~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~  362 (375)
T 2gfp_A          307 ML-FPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMT  362 (375)
T ss_dssp             HT-SSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHH
T ss_pred             Hh-hHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence            43 4555558899988 89999999999999999999999999998887777666543

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.91  E-value=1.6e-25  Score=206.93  Aligned_cols=333  Identities=14%  Similarity=0.095  Sum_probs=185.9

Q ss_pred             ccccchhhh-hhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHhhHHHHHHHH---HHHhhhhh-H
Q 014286           68 GVVNEPLES-ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGAS---ISATTRNL-I  142 (427)
Q Consensus        68 ~~~~~~~~~-i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~---~~~~~~~~-~  142 (427)
                      ....+.+|. +++++|++..+.  |++.+.+.++..++++++|+++||+|||++++++..+++++..   .+.+++.. .
T Consensus        24 ~~~~~~~~~~l~~~~g~s~~~~--g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~  101 (417)
T 2cfq_A           24 GAYFPFFPIWLHDINHISKSDT--GIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQY  101 (417)
T ss_dssp             HHHTTTHHHHHHTTTCCCTTTS--HHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444566776 456689887777  9999999999999999999999999999999988877765322   12233222 1


Q ss_pred             HHHHHHHHHhhhccccccc----eeecccCCchhh------h-hcCChHHHHH-HH-HHHh--C--------C-C-----
Q 014286          143 GMLLGRFVVGTGMGLGPTV----AALYVTESPHWL------Y-KKGRTAEAEA-EF-EKLL--G--------G-S-----  193 (427)
Q Consensus       143 ~l~~~r~l~G~~~g~~~~~----~~~~i~~~~~~~------~-~~~~~~~~~~-~~-~~~~--~--------~-~-----  193 (427)
                      .++..+++.|++.+...+.    ...+.++.++..      . .......... .+ ..+.  +        . .     
T Consensus       102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~f~~~~~~~~~~~  181 (417)
T 2cfq_A          102 NILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILA  181 (417)
T ss_dssp             TCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTTTTTTTHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHH
Confidence            2345566666655443322    222222211100      0 0001000000 00 0000  0        0 0     


Q ss_pred             ----chhhHHHHHhh-hhc-CCCC---CcchhHhhhcccchhHHHHHHHHHHhhhccchhHHHHhHHHHHHh-cCCC---
Q 014286          194 ----HVKSSLAELSK-LDR-GDDG---DIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKS-AGLS---  260 (427)
Q Consensus       194 ----~~~~~~~~~~~-~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~---  260 (427)
                          ..+++.++..+ .++ ++++   ...+++++++++..+...+..+.....    +.....+.+.+..+ .+..   
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~  257 (417)
T 2cfq_A          182 VLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCT----YDVFDQQFANFFTSFFATGEQG  257 (417)
T ss_dssp             HHSCSSCCCCSCSSCSSSSSSSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHTSSSHHHH
T ss_pred             HHHHHcCcccccccccccccccccccccHHHHHHHhcCCchhhHHHHHHHHHHH----HHHHHHHHHHHHHHHHhccCCC
Confidence                00000000000 000 0011   112344566666655444332222221    11111223333222 2211   


Q ss_pred             h---hHHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhc
Q 014286          261 S---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALG  337 (427)
Q Consensus       261 ~---~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (427)
                      .   +....+..++.+++.++.++++||+|||+.+..+..+.+++...+...       + ..+..++...+.+.+... 
T Consensus       258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~-------~-~~~~~~~~~~l~~~~~~~-  328 (417)
T 2cfq_A          258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA-------T-SALEVVILKTLHMFEVPF-  328 (417)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTC-------C-SHHHHHHHTTHHHHHHHH-
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh-------c-cHHHHHHHHHHHHHHHHH-
Confidence            1   134445566778889999999999999998887777666654443221       1 112222222222322221 


Q ss_pred             ccchhhhhccCcCCccchhhHHHHH-HHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhccCCCCCC
Q 014286          338 AGPVPSLLLPEIFPSRIRAKAMAVC-MSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKS  415 (427)
Q Consensus       338 ~~~~~~~~~~~~~p~~~~g~~~g~~-~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  415 (427)
                      ..+....++.|.+|++.||++.++. +...++|++++|.+.|.+.+..|+...|.+.+++++++.++.+...+|+++.+
T Consensus       329 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~  407 (417)
T 2cfq_A          329 LLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLS  407 (417)
T ss_dssp             HHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCTTC
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCchH
Confidence            2233355899999999999999994 88888999999999999999888888888888888887776666566555443

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.86  E-value=4.6e-22  Score=189.70  Aligned_cols=95  Identities=21%  Similarity=0.325  Sum_probs=86.0

Q ss_pred             chhh-hhhhccC------CCCchhHHHHHHHHHHHHHHHHHHhHHhhhccc-chhHHHHHhhHHHHHHHHHHHhhh-hhH
Q 014286           72 EPLE-SISLDLG------FNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV-GRRRAFQLCALPMIIGASISATTR-NLI  142 (427)
Q Consensus        72 ~~~~-~i~~~~~------~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~-~~~  142 (427)
                      +.++ .+.+++|      ++..+.  |++.+.+.++..++++++|+++||+ |||+++.++.++.+++.+++++++ +++
T Consensus        33 ~~l~~~l~~~~~~~~~~~~s~~~~--g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~  110 (524)
T 2xut_A           33 NILTPFLMTALLLSIPEELRGAVA--KDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQ  110 (524)
T ss_dssp             HHHHHHHHHSCSSCCSSSTTTTTH--HHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHH
T ss_pred             HHHHHHHHHHhccccccccCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHH
Confidence            3444 5677888      877766  9999999999999999999999999 999999999999999999999999 999


Q ss_pred             HHHHHHHHHhhhccccccceeecccC
Q 014286          143 GMLLGRFVVGTGMGLGPTVAALYVTE  168 (427)
Q Consensus       143 ~l~~~r~l~G~~~g~~~~~~~~~i~~  168 (427)
                      .++++|+++|++.+...+...+++.|
T Consensus       111 ~~~~~~~l~g~~~~~~~~~~~~~~~~  136 (524)
T 2xut_A          111 GFYTGLFLIALGSGGIKPLVSSFMGD  136 (524)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccchhHHHHHHH
Confidence            99999999999999998888888776

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.56  E-value=2.8e-14  Score=133.17  Aligned_cols=159  Identities=14%  Similarity=0.055  Sum_probs=124.6

Q ss_pred             hhHHHHhHHHHHHhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHH----HhhcCCC
Q 014286          243 INAIFYFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVA----ASSSYIP  315 (427)
Q Consensus       243 ~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~----~~~~~~~  315 (427)
                      ......+.+.+.++. .+..   +......++..++.++.|+++||+|||+.+..+.++.+++.+++.+    ..+.   
T Consensus        44 ~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~---  119 (451)
T 1pw4_A           44 RKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSI---  119 (451)
T ss_dssp             HTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSS---
T ss_pred             HHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccH---
Confidence            334445566666666 5544   6777788889999999999999999999999999999998888776    4332   


Q ss_pred             CCchhHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cchhHHHHH
Q 014286          316 GSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLG-PQLLYSIFG  394 (427)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~  394 (427)
                           +..++..++.+.+.+. ..+...+++.|.+|+++|+++.|+.+....+|..++|.+.+.+.+..| |+..|++.+
T Consensus       120 -----~~l~~~~~l~G~~~~~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~  193 (451)
T 1pw4_A          120 -----AVMFVLLFLCGWFQGM-GWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPA  193 (451)
T ss_dssp             -----SHHHHHHHHHHHHHHH-THHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHH
T ss_pred             -----HHHHHHHHHHHHHhhh-ccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence                 2444445555555443 345555699999999999999999999999999999999999999999 999999998


Q ss_pred             HHHHHHHHHHHHhccCC
Q 014286          395 TFCLMAVAFVKRNVVET  411 (427)
Q Consensus       395 ~~~~~~~~~~~~~~~~~  411 (427)
                      ++.++..++.++..+|+
T Consensus       194 ~~~~~~~~~~~~~~~~~  210 (451)
T 1pw4_A          194 FCAILVALFAFAMMRDT  210 (451)
T ss_dssp             HHHHHHHHHHHHHCCCS
T ss_pred             HHHHHHHHHHHhhccCC
Confidence            88877776666666654

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.49  E-value=2.2e-13  Score=126.59  Aligned_cols=158  Identities=14%  Similarity=0.085  Sum_probs=118.9

Q ss_pred             hhHHHHhHHHHHHhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCch
Q 014286          243 INAIFYFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSAS  319 (427)
Q Consensus       243 ~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (427)
                      ........|.+.++.|.+..   +......++..++.++.|+++||+|||+.+..+.++.+++.++......     ..+
T Consensus        42 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~-----~~~  116 (438)
T 3o7q_A           42 NNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE-----IMN  116 (438)
T ss_dssp             HHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH-----TTC
T ss_pred             HHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccc-----ccc
Confidence            44555667788888998876   5667777888899999999999999999999999999988887733221     112


Q ss_pred             hHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHH-HHhc-------------
Q 014286          320 LYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLL-EQLG-------------  385 (427)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~-~~~g-------------  385 (427)
                      .+..++..++.+.+.+.. .+...+++.|.+|+++|+.+.++.+....+|..++|.+.+.+. +..+             
T Consensus       117 ~~~l~~~~~l~G~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~  195 (438)
T 3o7q_A          117 YTLFLVGLFIIAAGLGCL-ETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPE  195 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHH-HHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHH
T ss_pred             HHHHHHHHHHHHhhHHHh-hhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcc
Confidence            234455555555555433 4455569999999999999999999999999999999999998 4443             


Q ss_pred             ------------cchhHHHHHHHHHHHHHHHHH
Q 014286          386 ------------PQLLYSIFGTFCLMAVAFVKR  406 (427)
Q Consensus       386 ------------~~~~~~~~~~~~~~~~~~~~~  406 (427)
                                  |++.|.+.+++.++..++..+
T Consensus       196 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  228 (438)
T 3o7q_A          196 QLSAYKHSLVLSVQTPYMIIVAIVLLVALLIML  228 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence                        778887777666655544433

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.48  E-value=2.1e-13  Score=128.67  Aligned_cols=154  Identities=9%  Similarity=0.109  Sum_probs=116.2

Q ss_pred             HHHHhHHHHHHh-----cCCChh---HHHHHHHHHHHHHHHhHhhhhcc-cCccchhhhhhHHHHHHHHHHHHHhhcCCC
Q 014286          245 AIFYFSSSVFKS-----AGLSSG---LANVFVGIANLLGSVVAMVLMDK-LGRKALLQWSFFSMAVSMAIQVAASSSYIP  315 (427)
Q Consensus       245 ~~~~~~~~~~~~-----~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (427)
                      ......+++.+.     .|.+..   +......++..++.++.|+++|| +|||+.+..+.++.+++.+++....+    
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~----  107 (491)
T 4aps_A           32 MRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFG----  107 (491)
T ss_dssp             HHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCS----
T ss_pred             HHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhh----
Confidence            333444455454     788776   56677788889999999999999 89999999999888888777654322    


Q ss_pred             CCchhHHHHHHHHHHHHHHhhcccchhhhhccCcCCccc--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHH
Q 014286          316 GSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRI--RAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIF  393 (427)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~  393 (427)
                          .+...+..++.+.+.+. ..+...+++.|.+|+++  |+.+.++.+...++|..++|.+.+.+.+..||+..|.+.
T Consensus       108 ----~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~  182 (491)
T 4aps_A          108 ----ASALFGSIILIIIGTGF-LKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLA  182 (491)
T ss_dssp             ----TTHHHHHHHHHHHHHHH-HHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHHHHHh-ccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence                23444444555554443 34555669999999988  778888899999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHHHh
Q 014286          394 GTFCLMAVAFVKRN  407 (427)
Q Consensus       394 ~~~~~~~~~~~~~~  407 (427)
                      ++..+++.++....
T Consensus       183 ~~~~~~~~~~~~~~  196 (491)
T 4aps_A          183 AIGMFIGLLVYYFG  196 (491)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            77776665555433

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.43  E-value=2.8e-13  Score=123.10  Aligned_cols=161  Identities=12%  Similarity=0.063  Sum_probs=123.8

Q ss_pred             hhHHHHhHHHHHHhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCch
Q 014286          243 INAIFYFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSAS  319 (427)
Q Consensus       243 ~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (427)
                      ........+.+.++.|.+..   .......++..++.+..|+++||+|||+.+..+..+..++..+.....+.       
T Consensus        16 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~-------   88 (375)
T 2gfp_A           16 QTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSL-------   88 (375)
T ss_dssp             HHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHH-------
T ss_pred             HHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccH-------
Confidence            34444456677788888776   56667778888999999999999999999999999998888877765432       


Q ss_pred             hHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Q 014286          320 LYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLM  399 (427)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~  399 (427)
                       +.......+.+.+.+. ..+....++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..||+..|.+.+++.++
T Consensus        89 -~~l~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  166 (375)
T 2gfp_A           89 -TVLIAASAMQGMGTGV-GGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAG  166 (375)
T ss_dssp             -HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHh-hhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence             2334444444444432 34555668999999999999999999999999999999999999888999999888877776


Q ss_pred             HHHHHHHhccCCC
Q 014286          400 AVAFVKRNVVETK  412 (427)
Q Consensus       400 ~~~~~~~~~~~~~  412 (427)
                      ..+...+..||++
T Consensus       167 ~~~~~~~~~~~~~  179 (375)
T 2gfp_A          167 VTFSMARWMPETR  179 (375)
T ss_dssp             HHCCCCCSSCCCS
T ss_pred             HHHHHHHHCcccC
Confidence            6654555556543

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.38  E-value=4.2e-12  Score=120.77  Aligned_cols=152  Identities=16%  Similarity=0.162  Sum_probs=113.3

Q ss_pred             HHHhHHHHHHhcC------CChh---HHHHHHHHHHHHHHHhHhhhhccc-CccchhhhhhHHHHHHHHHHHHHhhcCCC
Q 014286          246 IFYFSSSVFKSAG------LSSG---LANVFVGIANLLGSVVAMVLMDKL-GRKALLQWSFFSMAVSMAIQVAASSSYIP  315 (427)
Q Consensus       246 ~~~~~~~~~~~~g------~~~~---~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (427)
                      ..+..+++.++.|      .+..   .......++..++.++.|+++||+ |||+.+..+.++.+++.+++.+..     
T Consensus        32 ~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~-----  106 (524)
T 2xut_A           32 RNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFE-----  106 (524)
T ss_dssp             HHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTS-----
T ss_pred             HHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhc-----
Confidence            3344445555667      6655   567777888889999999999999 999999999888888877766543     


Q ss_pred             CCchhHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHH---HHHHHHHHHHHHHHHHHHHHHHhccchhHHH
Q 014286          316 GSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAV---CMSVHWVINFFVGLLFLRLLEQLGPQLLYSI  392 (427)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~---~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~  392 (427)
                        .+.+..++..++.+.+.+. ..+...+++.|.+|+++|+++.+.   .+...++|..++|.+.+.+.+..||+..|.+
T Consensus       107 --~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~  183 (524)
T 2xut_A          107 --HSVQGFYTGLFLIALGSGG-IKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGI  183 (524)
T ss_dssp             --SCHHHHHHHHHHHHHHHHT-THHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHH
T ss_pred             --ccHHHHHHHHHHHHHhccc-cchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence              0123444444444544443 345666699999999999877666   8889999999999999999998999999988


Q ss_pred             HHHHHHHHHHHHH
Q 014286          393 FGTFCLMAVAFVK  405 (427)
Q Consensus       393 ~~~~~~~~~~~~~  405 (427)
                      .+++.++..++..
T Consensus       184 ~~~~~~~~~~~~~  196 (524)
T 2xut_A          184 PGVLMFVATVFFW  196 (524)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            8877666655543

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=98.98  E-value=4.5e-09  Score=98.98  Aligned_cols=119  Identities=13%  Similarity=0.077  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCC----------CCchhHHHHHHHHHHHH
Q 014286          263 LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIP----------GSASLYLSVGGMLMFVL  332 (427)
Q Consensus       263 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~  332 (427)
                      +......++.++|.++.|+++||+|||+.+.++.++..++.++.++.......          -..+.+..++.-++.+.
T Consensus        59 ~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~  138 (491)
T 4gc0_A           59 FCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGI  138 (491)
T ss_dssp             HHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHH
Confidence            34555678889999999999999999999999999998888877643211000          01223344444555555


Q ss_pred             HHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014286          333 TFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLE  382 (427)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~  382 (427)
                      +.+. ..+....+++|..|+++|+...++.+.....|..+++.+......
T Consensus       139 g~G~-~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~  187 (491)
T 4gc0_A          139 GVGL-ASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIAR  187 (491)
T ss_dssp             HHHH-HHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHH-HHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhcc
Confidence            4443 345556699999999999999999999988888888877666554

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=98.83  E-value=1e-10  Score=107.81  Aligned_cols=170  Identities=15%  Similarity=0.130  Sum_probs=94.9

Q ss_pred             hhcccchhHHHHHHHHHHhhhccchhHHHHhHHHHH-HhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhh
Q 014286          219 LLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVF-KSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQW  294 (427)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~  294 (427)
                      .+|+++++......++....    +.....+.+.+. ++.|.+..   .......++..+++++.|+++||+|||+.+..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~   78 (417)
T 2cfq_A            3 YLKNTNFWMFGLFFFFYFFI----MGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLW   78 (417)
T ss_dssp             TTSCHHHHHHHHHHHHHHHH----HHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHH
T ss_pred             cccccchHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence            45666666555444333332    222223344433 44677655   67777788899999999999999999999887


Q ss_pred             hhHHHHHHHHHH---HHHhhcCCCCCchhHHHHHHHHHHHHHHhh---cccchhhhhccCcCCccchhhHHHHHHHHHHH
Q 014286          295 SFFSMAVSMAIQ---VAASSSYIPGSASLYLSVGGMLMFVLTFAL---GAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWV  368 (427)
Q Consensus       295 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~  368 (427)
                      +..+..++...+   ........       .......+.+...+.   ...+....+..|.  ++.++.+.|..+....+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~  149 (417)
T 2cfq_A           79 IITGMLVMFAPFFIFIFGPLLQY-------NILVGSIVGGIYLGFCFNAGAPAVEAFIEKV--SRRSNFEFGRARMFGCV  149 (417)
T ss_dssp             HHHHTTSCHHHHHHHTHHHHHHT-------TCCHHHHGGGSSTTHHHHTTHHHHHHHHHHH--HHHHTCCHHHHSSSTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh--hhhcccchHHHHHHHHH
Confidence            776554322111   11110000       000011111111111   1112222222221  14567778888888889


Q ss_pred             HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Q 014286          369 INFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVA  402 (427)
Q Consensus       369 g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~  402 (427)
                      |..++|.+.+.+.+ .+|+..|++.++..++..+
T Consensus       150 g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~  182 (417)
T 2cfq_A          150 GWALGASIVGIMFT-INNQFVFWLGSGCALILAV  182 (417)
T ss_dssp             HHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHH
T ss_pred             HHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHH
Confidence            99999999999887 5788887766555443333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	427
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	2e-07
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	3e-07

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 50.2 bits (118), Expect = 2e-07
 Identities = 42/392 (10%), Positives = 96/392 (24%), Gaps = 40/392 (10%)

Query: 51  PHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGW 110
            +  +  L  F + + +G    P   I L    + +    G++ +     + +   L G 
Sbjct: 7   TNFWMFGLFFFFYFFIMGAYF-PFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGL 65

Query: 111 IADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTESP 170
           ++D +G R+        M++  +          +     V     G+           + 
Sbjct: 66  LSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAV 125

Query: 171 HWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIV---------------- 214
               +K             + G    +  A +  +    +   V                
Sbjct: 126 EAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLF 185

Query: 215 ---------------------KFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSV 253
                                 F   L    FR   +      +  +S    +F    + 
Sbjct: 186 FAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFAN 245

Query: 254 FKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSY 313
           F ++  ++G     V         +    +       + +    +  +     ++     
Sbjct: 246 FFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIG 305

Query: 314 IPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFV 373
              + S    V    + +             +    F  R  A    VC      +    
Sbjct: 306 SSFATSALEVVILKTLHMFEVPFLLVGCFKYI-TSQFEVRFSATIYLVCFCFFKQLAMIF 364

Query: 374 G-LLFLRLLEQLGPQLLYSIFGTFCLMAVAFV 404
             +L   + E +G Q  Y + G   L      
Sbjct: 365 MSVLAGNMYESIGFQGAYLVLGLVALGFTLIS 396

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 50.1 bits (118), Expect = 3e-07
 Identities = 36/434 (8%), Positives = 111/434 (25%), Gaps = 56/434 (12%)

Query: 40  ENTNPSWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLG 99
              +P+++     + +     +   Y +           ++ GF+   L  G  +S    
Sbjct: 13  AEIDPTYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDL--GFALSGISI 70

Query: 100 GAFIGSTLSGWIADGVGRRRAFQ----LCALPMIIGASISATTRNLIGMLLGRFVVGTGM 155
                  + G ++D    R        L A  M+    +   T ++  M +  F+ G   
Sbjct: 71  AYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQ 130

Query: 156 GLGPTVAALYVTESPHWLYKKGRTAEAEA------------------------------- 184
           G+G       +        + G  +                                   
Sbjct: 131 GMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPA 190

Query: 185 ---------------EFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVF 229
                          +  +  G   ++    +            +  +++          
Sbjct: 191 FCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKL 250

Query: 230 IGSTLFALQQLSGINAIFYFSSSVF--KSAGLSSGLANVFVGIANLLGSVVAMVLMDKLG 287
           +     A   +  +       S  +  +    +   ++    +    G    ++      
Sbjct: 251 LWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSD 310

Query: 288 RKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLP 347
           +          +     + +A    ++  + +  + +  M++       G   +  L   
Sbjct: 311 KVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGF-LIYGPVMLIGLHAL 369

Query: 348 EIFPSRIRAKAMAVCMSVHWVINFFVG-LLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKR 406
           E+ P +    A        ++        +    ++  G    + +     ++AV  +  
Sbjct: 370 ELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 429

Query: 407 NVVETKGKSLQEIE 420
            ++  K +  Q ++
Sbjct: 430 VMIGEKRRHEQLLQ 443

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	427
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.97
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.95
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.5
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.08

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=2.1e-31  Score=246.86  Aligned_cols=348  Identities=11%  Similarity=0.058  Sum_probs=225.3

Q ss_pred             hhHHHHHHHHHHhhhhhccccccccchhhhhhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHhhH
Q 014286           47 KLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCAL  126 (427)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~  126 (427)
                      +.+|.++..++++++..+++...++.+.|.+. |+|++.++.  |++.+++.+++.++++++|+++||+|||+++.++.+
T Consensus        21 ~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~--g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~   97 (447)
T d1pw4a_          21 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDL--GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLI   97 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCH--HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence            44566777788888888888888888888876 579888877  999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhh----hhHHHHHHHHHHhhhccccccceeecccCCchhhhhcCChHHHHHHHHHH-------------
Q 014286          127 PMIIGASISATTR----NLIGMLLGRFVVGTGMGLGPTVAALYVTESPHWLYKKGRTAEAEAEFEKL-------------  189 (427)
Q Consensus       127 ~~~~~~~~~~~~~----~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-------------  189 (427)
                      +.+++.+++++++    +++.++++|++.|++.|...+....++.|.    ..++++..+.......             
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~----~~~~~r~~~~~~~~~~~~~g~~i~~~~~~  173 (447)
T d1pw4a_          98 LAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHW----WSQKERGGIVSVWNCAHNVGGGIPPLLFL  173 (447)
T ss_dssp             HHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTT----CTTTHHHHHHHHHHHHHHHHHTSHHHHHH
T ss_pred             HHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHH----HHhhcccccccccccccchhhhhhhhhhh
Confidence            9999999998864    788999999999999999998888888762    1222222221111100             


Q ss_pred             -----hCC-C----------------------chhhH------------HHHH--hhhhcCCCCCcchhHhhhcccchhH
Q 014286          190 -----LGG-S----------------------HVKSS------------LAEL--SKLDRGDDGDIVKFEELLYGRHFRV  227 (427)
Q Consensus       190 -----~~~-~----------------------~~~~~------------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  227 (427)
                           ... .                      ..++.            .++.  ++.+++....+...+..++++..+.
T Consensus       174 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (447)
T d1pw4a_         174 LGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWY  253 (447)
T ss_dssp             HHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHH
T ss_pred             hHhhhhhcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhhhhhcccchhhccccccchhhHHHHHHHcCchHHH
Confidence                 000 0                      00000            0000  0000000011112334444444443


Q ss_pred             HHHHHHHHHhhhccchhHHHHhHHHH-HHhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHH
Q 014286          228 VFIGSTLFALQQLSGINAIFYFSSSV-FKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSM  303 (427)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~  303 (427)
                      .....++...    .......+.+.+ .+..+.+..   .......+..+++.++.|++.||++|++..........+..
T Consensus       254 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  329 (447)
T d1pw4a_         254 IAIANVFVYL----LRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVT  329 (447)
T ss_dssp             HHHHHHHHHH----HHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred             HHHHhhhhhh----hhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHH
Confidence            3333322222    223333344443 345666655   56667778888999999999999998775554444333333


Q ss_pred             HHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 014286          304 AIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVI-NFFVGLLFLRLLE  382 (427)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g-~~~~~~~~g~l~~  382 (427)
                      ........   ....+.+...+..++.+.+.. +..+....+..|.+|++.||++.|+.+.+.+++ ..++|.+.|.+.|
T Consensus       330 ~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~  405 (447)
T d1pw4a_         330 IATIVYWM---NPAGNPTVDMICMIVIGFLIY-GPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVD  405 (447)
T ss_dssp             HHHHHTTS---CCTTCHHHHHHHHHHHHHHHT-HHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHh---cccccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            32222211   122233333444444333322 334555668899999999999999999998875 5678999999999


Q ss_pred             HhccchhHHHHHHHHHHHHHHHHHhcc
Q 014286          383 QLGPQLLYSIFGTFCLMAVAFVKRNVV  409 (427)
Q Consensus       383 ~~g~~~~~~~~~~~~~~~~~~~~~~~~  409 (427)
                      ..|+...|.+.+++.+++.++.....+
T Consensus       406 ~~g~~~~~~~~~~~~~~~~~~~~~~~~  432 (447)
T d1pw4a_         406 FFGWDGGFMVMIGGSILAVILLIVVMI  432 (447)
T ss_dssp             SSCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999998988888877777666655444

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=1.2e-27  Score=218.60  Aligned_cols=348  Identities=14%  Similarity=0.030  Sum_probs=209.6

Q ss_pred             Hhhhhhccccccccchhhh-hhhccCCCCchhHHHHHHHHHHHHHHHHHHhHHhhhcccchhHHHHHhhHHHHHHHHHHH
Q 014286           58 LSSFLFGYHLGVVNEPLES-ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISA  136 (427)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~  136 (427)
                      +..+...+..+...|.+|. +.+++|+|.++.  |++.+++.++..++++++|+++||+||||+++++..+..++.++..
T Consensus        14 ~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~--g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~   91 (417)
T d1pv7a_          14 LFFFFYFFIMGAYFPFFPIWLHDINHISKSDT--GIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFF   91 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH--HHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence            3344444555666788886 567789866655  9999999999999999999999999999999999999999999988


Q ss_pred             hhhhhHHH----HHHHHHHhhhccccccceeecccCC-chhhhhcCCh-HH--HHHH----HHHHhC-------------
Q 014286          137 TTRNLIGM----LLGRFVVGTGMGLGPTVAALYVTES-PHWLYKKGRT-AE--AEAE----FEKLLG-------------  191 (427)
Q Consensus       137 ~~~~~~~l----~~~r~l~G~~~g~~~~~~~~~i~~~-~~~~~~~~~~-~~--~~~~----~~~~~~-------------  191 (427)
                      +..+....    ++.+.+.+.+.+...........+. .+........ ..  ....    .....+             
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  171 (417)
T d1pv7a_          92 IFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFW  171 (417)
T ss_dssp             HHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             HhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhcccccccccccccccccccccccc
Confidence            87766554    3444444444443333322221110 0000000000 00  0000    000000             


Q ss_pred             ----------------CCchhh-HHHHHhhhhcCCCCCcchhHhhhcccchhHHHHHHHHHHhhhccchhHHHHhHHHHH
Q 014286          192 ----------------GSHVKS-SLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVF  254 (427)
Q Consensus       192 ----------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (427)
                                      ....+. ..++.++.++.++.......+..+.+..+.............    ...........
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~  247 (417)
T d1pv7a_         172 LGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTY----DVFDQQFANFF  247 (417)
T ss_dssp             HHHHHHHHHHHHHHSSCCCSCSSSCSSHHHHSCCCCCCHHHHHHHTTSSHHHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHhcccccchhhhhhhhhhcccccccccccccccccccchhhhhHHHHHHH----Hhhhccccccc
Confidence                            000000 000000111111112222333344444443333333322211    11112222222


Q ss_pred             HhcCCChh-------HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHHHHHHH
Q 014286          255 KSAGLSSG-------LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGM  327 (427)
Q Consensus       255 ~~~g~~~~-------~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (427)
                      .....+..       .......++..++..+.+++.||.++|+.+..+..+.+++.+.+....        +.+...+..
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~  319 (417)
T d1pv7a_         248 TSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFAT--------SALEVVILK  319 (417)
T ss_dssp             TTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCC--------CHHHHHHHH
T ss_pred             cccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhcccccc--------ccchhhHHH
Confidence            22222211       345556677788889999999999999999988888877776665432        223444444


Q ss_pred             HHHHHHHhhcccchhhhhccCcCCccchhhHHHHHH-HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHH
Q 014286          328 LMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCM-SVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKR  406 (427)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~-~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  406 (427)
                      .+.+.+.+.. .+...+++.|.+|++.|+++.|+.. ....+|..++|.+.|.+.|..|++..|++.+++.++..++..+
T Consensus       320 ~l~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~  398 (417)
T d1pv7a_         320 TLHMFEVPFL-LVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVF  398 (417)
T ss_dssp             HHHHHHHHHH-HHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
Confidence            4555554433 3455558999999999999999865 5567899999999999999999999999999998888888878


Q ss_pred             hccCCCCCCHHHHH
Q 014286          407 NVVETKGKSLQEIE  420 (427)
Q Consensus       407 ~~~~~~~~~~~~~~  420 (427)
                      ..+++++.+.++++
T Consensus       399 ~l~~~~~~~~~r~~  412 (417)
T d1pv7a_         399 TLSGPGPLSLLRRQ  412 (417)
T ss_dssp             HSCCSSCTTHHHHH
T ss_pred             hhcCCCccchhHhh
Confidence            88877777665544

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.50  E-value=5.7e-14  Score=128.55  Aligned_cols=159  Identities=14%  Similarity=0.070  Sum_probs=118.3

Q ss_pred             HHHhHHHHHHhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhhhHHHHHHHHHHHHHhhcCCCCCchhHH
Q 014286          246 IFYFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYL  322 (427)
Q Consensus       246 ~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (427)
                      +....|.+ ++.|.+..   +......++..++.++.|+++||+|||+.+..+.++.+++.++........    .+.+.
T Consensus        44 ~~~~~p~~-~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~  118 (447)
T d1pw4a_          44 FALAMPYL-VEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWAT----SSIAV  118 (447)
T ss_dssp             HHHHHHHT-TSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHH----SSSSH
T ss_pred             HHHHHHHH-HHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhh----hhHHH
Confidence            34445544 45677665   677788888999999999999999999999999998888887776543211    11123


Q ss_pred             HHHHHHHHHHHHhhcccchhhhhccCcCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhHHHHHHHHHHHH
Q 014286          323 SVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQL-GPQLLYSIFGTFCLMAV  401 (427)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~-g~~~~~~~~~~~~~~~~  401 (427)
                      .++...+.+.+.+.. .+....++.|.+|+++|+++.|+.+....+|..++|.+.+.+.+.. +|+..+.+.+.+.++..
T Consensus       119 ~~~~~~~~g~~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~  197 (447)
T d1pw4a_         119 MFVLLFLCGWFQGMG-WPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVA  197 (447)
T ss_dssp             HHHHHHHHHHHHHHT-HHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhh-hhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHH
Confidence            444444445444433 3444558999999999999999999999999999999988877765 68888888888877777


Q ss_pred             HHHHHhccC
Q 014286          402 AFVKRNVVE  410 (427)
Q Consensus       402 ~~~~~~~~~  410 (427)
                      ++.+...++
T Consensus       198 ~~~~~~~~~  206 (447)
T d1pw4a_         198 LFAFAMMRD  206 (447)
T ss_dssp             HHHHHHCCC
T ss_pred             HHHHHhccc
Confidence            766666554

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.08  E-value=1.6e-10  Score=103.56  Aligned_cols=185  Identities=13%  Similarity=0.027  Sum_probs=106.7

Q ss_pred             hhcccchhHHHHHHHHHHhhhccchhHHHHhHHHHHHhcCCChh---HHHHHHHHHHHHHHHhHhhhhcccCccchhhhh
Q 014286          219 LLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWS  295 (427)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~  295 (427)
                      .+|+|++|.+.+..++..+...   ...+++..++.++.|.+..   +......++..++.++.|+++||+|||+.+..+
T Consensus         3 ~lkn~~~~~l~~~~f~~~~~~~---~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~   79 (417)
T d1pv7a_           3 YLKNTNFWMFGLFFFFYFFIMG---AYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWI   79 (417)
T ss_dssp             HHHSHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHH
T ss_pred             cccCchHHHHHHHHHHHHHHHH---HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHH
Confidence            4678888877666655544222   2223333345566788877   566677788889999999999999999999988


Q ss_pred             hHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhhcccchhhhhccCcCC-ccchhhHHHHHHHHHHHHHHHHH
Q 014286          296 FFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFP-SRIRAKAMAVCMSVHWVINFFVG  374 (427)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~g~~~g~~~~~~~~g~~~~~  374 (427)
                      ..+..++...+.......    .................+....+..........+ .+.+....+........+..+++
T Consensus        80 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (417)
T d1pv7a_          80 ITGMLVMFAPFFIFIFGP----LLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGA  155 (417)
T ss_dssp             HHHHHHTHHHHHHHTHHH----HHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhh----hHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhcccccccc
Confidence            887777766665543211    0000111111111111111112222211111111 23455567777788888889999


Q ss_pred             HHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhccCC
Q 014286          375 LLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVET  411 (427)
Q Consensus       375 ~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (427)
                      .+.+.+.+.. +...+........+..++..+..++.
T Consensus       156 ~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (417)
T d1pv7a_         156 SIVGIMFTIN-NQFVFWLGSGCALILAVLLFFAKTDA  191 (417)
T ss_dssp             HHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHSSCCCS
T ss_pred             cccccccccc-ccccccchhhHHHHHHHHHHHHhccc
Confidence            9998887754 44455555555555555554555544