Citrus Sinensis ID: 014294

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------
MGGLRLLALVVVTVAVVHQWAVGGGGVMGNFVFEVENKFKAGGERERTLSALKQHDTRRHGRMMASIDLELGGNGHPSATGLYFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSSTSGEIACSDNFCRTTYNNRYPSCSPGVRCEYVVTYGDGSSTSGYFVRDIIQLNQASGNLKTAPLNSSVIFGCGNRQSGDLGSSTDAAVDGILGFGQANSSLLSQLAAAGNVRKEFAHCLDVVKGGGIFAIGDVVSPKVKTTPMVPNMPHYNVILEEVEVGGNPLDLPTSLLGTGDERGTIIDSGTTLAYLPPMLYDLVLSQILDRQPGLKMHTVEEQFSCFQFSKNVDDAFPTVTFKFKGSLSLTVYPHEYLFQIREDVWCIGWQNGGLQNHDGRQMILLGGTVYSCFMLN
ccccHHHHHHHHHHHHHHHHHcccccccccEEEEEEcccccccHHHHHHHHHHHccccccccccccccccccccccccccccEEEEEEccccccEEEEEEEcccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccEEEEEEEEEEEEEEccccccccccccccEEEEccccccccccccccccccEEEcccccccHHHHHHHHccccccccEEEcccccccEEEEEccccccccEEEccccccccEEEEEEEEEEccEEEccccccccccccccEEEEcccccccccHHHHHHHHHHHHHHcccccccccccccccEEccccccccccEEEEEEccccEEEEccccEEEEEcccEEEEEEEccccccccccccEEEEcEEEccEEEc
cHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEccccccccHHHHHHHHHHcHHHHHccccccccccccccccccccEEEEEEEEccccEEEEEEEEcccccEEEEccccccccccccccccccccccccccccEEcccccHHHHHcccccccccccccccEEEEEEcccccccEEEEEEEEEEcccccccccccccccEEEEEcccccccEEEccccccccEEccccccccHHHHHHHccccccEEEEEEccccccEEEEEEccccccEEEEcccccccEEEEEEEEEEEccEEEEcccccEccccccEEEEEcccEEEcccHHHHHHHHHHHHHHccccccccccccccEEEEEccccccccEEEEEEEccEEEcccHHHEEEEccccEEEEEEccccccccccccEEEEEcEEEccEccc
MGGLRLLALVVVTVAVVHQWavggggvmgNFVFEVENKFKAGGERERTLSALKQHDTRRHGRMMASIDlelggnghpsatglyftkvglgtptdeyyvqvdtgsdllwvncagcsrcptksdlgikltlfdpsksstsgeiacsdnfcrttynnrypscspgvrceyvvtygdgsstsgyfVRDIIQLNqasgnlktaplnssvifgcgnrqsgdlgsstdAAVDGILGFGQANSSLLSQLAAAGNVRKEFAHCLDVvkgggifaigdvvspkvkttpmvpnmphyNVILEEvevggnpldlptsllgtgdergtiidsgttlaylppmLYDLVLSQildrqpglkmhtveEQFSCFqfsknvddafptvtfkfkgslsltvypheyLFQIREDVWCigwqngglqnhdgrqMILLGGTVYSCFMLN
MGGLRLLALVVVTVAVVHQWAVGGGGVMGNFVFEVENKFkaggerertlsalkqhdtrrhGRMMASIDLELGGNGHPSATGLYFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLfdpsksstsgeiacSDNFCRTTYNNRYPSCSPGVRCEYVVTYGDGSSTSGYFVRDIIQLNQASGNLKTAPLNSSVIFGCGNRQSGDLGSSTDAAVDGILGFGQANSSLLSQLAAAGNVRKEFAHCLDVVKGGGIFAIGDVVSPKVKTTPMVPNMPHYNVILEEVEVGGNPLDLPTSLLGTGDERGTIIDSGTTLAYLPPMLYDLVLSQILDRQPGLKMHTVEEQFSCFQFSKNVDDAFPTVTFKFKGSLSLTVYPHEYLFQIREDVWCIGWQNGGLQNHDGRQMILLGGTVYSCFMLN
MGGLRllalvvvtvavvhqwavggggvmgnfvfeveNKFKAGGERERTLSALKQHDTRRHGRMMASIDLELGGNGHPSATGLYFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSSTSGEIACSDNFCRTTYNNRYPSCSPGVRCEYVVTYGDGSSTSGYFVRDIIQLNQASGNLKTAPLNSSVIFGCGNRQSGDLGSSTDAAVDGILGFgqanssllsqlaaagnVRKEFAHCLDVVKGGGIFAIGDVVSPKVKTTPMVPNMPHYNVILEEVEVGGNPLDLPTSLLGTGDERGTIIDSGTTLAYLPPMLYDLVLSQILDRQPGLKMHTVEEQFSCFQFSKNVDDAFPTVTFKFKGSLSLTVYPHEYLFQIREDVWCIGWQNGGLQNHDGRQMILLGGTVYSCFMLN
***LRLLALVVVTVAVVHQWAVGGGGVMGNFVFEVENKFK****************************LELGGNGHPSATGLYFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFD*******GEIACSDNFCRTTYNNRYPSCSPGVRCEYVVTYGDGSSTSGYFVRDIIQLNQASGNLKTAPLNSSVIFGCGNR*********DAAVDGILGFGQANSSLLSQLAAAGNVRKEFAHCLDVVKGGGIFAIGDVVSPKVKTTPMVPNMPHYNVILEEVEVGGNPLDLPTSLLGTGDERGTIIDSGTTLAYLPPMLYDLVLSQILDRQPGLKMHTVEEQFSCFQFSKNVDDAFPTVTFKFKGSLSLTVYPHEYLFQIREDVWCIGWQNGGLQNHDGRQMILLGGTVYSCFM**
*GGLRLLALVVVTVAVVHQWAV*******************************************************SATGLYFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSSTSGEIACSDNFCR*************VRCEYVVTYGDGSSTSGYFVRDIIQLNQASGN***APLNSSVIFGCGNRQSGDLGSSTDAAVDGILGFGQANSSLLSQLAAAGNVRKEFAHCLDVVKGGGIFAIGDVVSPKVKTTPMVPNMPHYNVILEEVEVGGNPLDLPTSLLGTGDERGTIIDSGTTLAYLPPMLYDLVLSQILDRQPG*****VEEQFSCFQFSKNVDDAFPTVTFKFKGSLSLTVYPHEYLFQIREDVWCIGWQNGGLQNHDGRQMILLGGTVYSCFML*
MGGLRLLALVVVTVAVVHQWAVGGGGVMGNFVFEVENKFKAGGERERTLSALKQHDTRRHGRMMASIDLELGGNGHPSATGLYFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDP********IACSDNFCRTTYNNRYPSCSPGVRCEYVVTYGDGSSTSGYFVRDIIQLNQASGNLKTAPLNSSVIFGCGNRQSGDLGSSTDAAVDGILGFGQANSSLLSQLAAAGNVRKEFAHCLDVVKGGGIFAIGDVVSPKVKTTPMVPNMPHYNVILEEVEVGGNPLDLPTSLLGTGDERGTIIDSGTTLAYLPPMLYDLVLSQILDRQPGLKMHTVEEQFSCFQFSKNVDDAFPTVTFKFKGSLSLTVYPHEYLFQIREDVWCIGWQNGGLQNHDGRQMILLGGTVYSCFMLN
MGGLRLLALVVVTVAVVHQWAVGGGGVMGNFVFEVENKFKAGGERERTLSALKQHDTRRHGRMMASIDLELGGNGHPSATGLYFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSSTSGEIACSDNFCRTTYNNRYPSCSPGVRCEYVVTYGDGSSTSGYFVRDIIQLNQASGNLKTAPLNSSVIFGCGNRQSGDLGSSTDAAVDGILGFGQANSSLLSQLAAAGNVRKEFAHCLDVVKGGGIFAIGDVVSPKVKTTPMVPNMPHYNVILEEVEVGGNPLDLPTSLLGTGDERGTIIDSGTTLAYLPPMLYDLVLSQILDRQPGLKMHTVEEQFSCFQFSKNVDDAFPTVTFKFKGSLSLTVYPHEYLFQIREDVWCIGWQNGGLQNHDGRQMILLGGTVYSCFMLN
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGGLRLLALVVVTVAVVHQWAVGGGGVMGNFVFEVENKFKAGGERERTLSALKQHDTRRHGRMMASIDLELGGNGHPSATGLYFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSSTSGEIACSDNFCRTTYNNRYPSCSPGVRCEYVVTYGDGSSTSGYFVRDIIQLNQASGNLKTAPLNSSVIFGCGNRQSGDLGSSTDAAVDGILGFGQANSSLLSQLAAAGNVRKEFAHCLDVVKGGGIFAIGDVVSPKVKTTPMVPNMPHYNVILEEVEVGGNPLDLPTSLLGTGDERGTIIDSGTTLAYLPPMLYDLVLSQILDRQPGLKMHTVEEQFSCFQFSKNVDDAFPTVTFKFKGSLSLTVYPHEYLFQIREDVWCIGWQNGGLQNHDGRQMILLGGTVYSCFMLN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query427 2.2.26 [Sep-21-2011]
Q9S9K4475 Aspartic proteinase-like no no 0.899 0.808 0.548 1e-128
Q9LX20528 Aspartic proteinase-like no no 0.686 0.554 0.307 2e-26
Q766C2438 Aspartic proteinase nepen N/A no 0.742 0.723 0.279 2e-26
Q0IU52410 Aspartic proteinase Asp1 no no 0.772 0.804 0.269 3e-22
Q3EBM5447 Probable aspartic proteas no no 0.756 0.722 0.274 3e-22
A2ZC67410 Aspartic proteinase Asp1 N/A no 0.742 0.773 0.265 7e-21
Q9LS40500 Protein ASPARTIC PROTEASE no no 0.786 0.672 0.268 2e-20
Q6XBF8437 Aspartic proteinase CDR1 no no 0.728 0.711 0.296 2e-20
Q9LHE3470 Protein ASPARTIC PROTEASE no no 0.693 0.629 0.279 3e-18
Q766C3437 Aspartic proteinase nepen N/A no 0.838 0.819 0.262 2e-17
>sp|Q9S9K4|ASPL2_ARATH Aspartic proteinase-like protein 2 OS=Arabidopsis thaliana GN=At1g65240 PE=1 SV=2 Back     alignment and function desciption
 Score =  457 bits (1176), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 216/394 (54%), Positives = 290/394 (73%), Gaps = 10/394 (2%)

Query: 29  GNFVFEVENKFKAGGERERTLSALKQHDTRRHGRMMASIDLELGGNGHPSATGLYFTKVG 88
            NFVF+ ++KF     +++ L   K HDTRRH RM+ASIDL LGG+    + GLYFTK+ 
Sbjct: 23  ANFVFKAQHKFAG---KKKNLEHFKSHDTRRHSRMLASIDLPLGGDSRVDSVGLYFTKIK 79

Query: 89  LGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSSTSGEIACSDNFC 148
           LG+P  EY+VQVDTGSD+LW+NC  C +CPTK++L  +L+LFD + SSTS ++ C D+FC
Sbjct: 80  LGSPPKEYHVQVDTGSDILWINCKPCPKCPTKTNLNFRLSLFDMNASSTSKKVGCDDDFC 139

Query: 149 RTTYNNRYPSCSPGVRCEYVVTYGDGSSTSGYFVRDIIQLNQASGNLKTAPLNSSVIFGC 208
             ++ ++  SC P + C Y + Y D S++ G F+RD++ L Q +G+LKT PL   V+FGC
Sbjct: 140 --SFISQSDSCQPALGCSYHIVYADESTSDGKFIRDMLTLEQVTGDLKTGPLGQEVVFGC 197

Query: 209 GNRQSGDLGSSTDAAVDGILGFGQANSSLLSQLAAAGNVRKEFAHCLDVVKGGGIFAIGD 268
           G+ QSG LG+  D+AVDG++GFGQ+N+S+LSQLAA G+ ++ F+HCLD VKGGGIFA+G 
Sbjct: 198 GSDQSGQLGNG-DSAVDGVMGFGQSNTSVLSQLAATGDAKRVFSHCLDNVKGGGIFAVGV 256

Query: 269 VVSPKVKTTPMVPNMPHYNVILEEVEVGGNPLDLPTSLLGTGDERGTIIDSGTTLAYLPP 328
           V SPKVKTTPMVPN  HYNV+L  ++V G  LDLP S++  G   GTI+DSGTTLAY P 
Sbjct: 257 VDSPKVKTTPMVPNQMHYNVMLMGMDVDGTSLDLPRSIVRNG---GTIVDSGTTLAYFPK 313

Query: 329 MLYDLVLSQILDRQPGLKMHTVEEQFSCFQFSKNVDDAFPTVTFKFKGSLSLTVYPHEYL 388
           +LYD ++  IL RQP +K+H VEE F CF FS NVD+AFP V+F+F+ S+ LTVYPH+YL
Sbjct: 314 VLYDSLIETILARQP-VKLHIVEETFQCFSFSTNVDEAFPPVSFEFEDSVKLTVYPHDYL 372

Query: 389 FQIREDVWCIGWQNGGLQNHDGRQMILLGGTVYS 422
           F + E+++C GWQ GGL   +  ++ILLG  V S
Sbjct: 373 FTLEEELYCFGWQAGGLTTDERSEVILLGDLVLS 406

Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 3EC: .EC: -
>sp|Q9LX20|ASPL1_ARATH Aspartic proteinase-like protein 1 OS=Arabidopsis thaliana GN=At5g10080 PE=1 SV=1 Back     alignment and function description
>sp|Q766C2|NEP2_NEPGR Aspartic proteinase nepenthesin-2 OS=Nepenthes gracilis GN=nep2 PE=1 SV=1 Back     alignment and function description
>sp|Q0IU52|ASP1_ORYSJ Aspartic proteinase Asp1 OS=Oryza sativa subsp. japonica GN=ASP1 PE=2 SV=1 Back     alignment and function description
>sp|Q3EBM5|ASPR1_ARATH Probable aspartic protease At2g35615 OS=Arabidopsis thaliana GN=At2g35615 PE=3 SV=1 Back     alignment and function description
>sp|A2ZC67|ASP1_ORYSI Aspartic proteinase Asp1 OS=Oryza sativa subsp. indica GN=ASP1 PE=2 SV=2 Back     alignment and function description
>sp|Q9LS40|ASPG1_ARATH Protein ASPARTIC PROTEASE IN GUARD CELL 1 OS=Arabidopsis thaliana GN=ASPG1 PE=1 SV=1 Back     alignment and function description
>sp|Q6XBF8|CDR1_ARATH Aspartic proteinase CDR1 OS=Arabidopsis thaliana GN=CDR1 PE=1 SV=1 Back     alignment and function description
>sp|Q9LHE3|ASPG2_ARATH Protein ASPARTIC PROTEASE IN GUARD CELL 2 OS=Arabidopsis thaliana GN=ASPG2 PE=2 SV=1 Back     alignment and function description
>sp|Q766C3|NEP1_NEPGR Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query427
255547548488 Aspartic proteinase Asp1 precursor, puta 0.913 0.799 0.642 1e-156
359476754 561 PREDICTED: aspartic proteinase-like prot 0.915 0.696 0.618 1e-149
297735249480 unnamed protein product [Vitis vinifera] 0.915 0.814 0.618 1e-148
359476756 560 PREDICTED: aspartic proteinase-like prot 0.913 0.696 0.618 1e-146
449442641478 PREDICTED: aspartic proteinase-like prot 0.906 0.809 0.624 1e-146
449476186478 PREDICTED: LOW QUALITY PROTEIN: aspartic 0.906 0.809 0.618 1e-145
147819672507 hypothetical protein VITISV_020864 [Viti 0.903 0.761 0.604 1e-143
449442281482 PREDICTED: aspartic proteinase-like prot 0.906 0.802 0.608 1e-140
356535252475 PREDICTED: aspartic proteinase-like prot 0.946 0.850 0.565 1e-139
363808270475 uncharacterized protein LOC100801883 [Gl 0.946 0.850 0.569 1e-138
>gi|255547548|ref|XP_002514831.1| Aspartic proteinase Asp1 precursor, putative [Ricinus communis] gi|223545882|gb|EEF47385.1| Aspartic proteinase Asp1 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  558 bits (1438), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 253/394 (64%), Positives = 321/394 (81%), Gaps = 4/394 (1%)

Query: 29  GNFVFEVENKFKAGGERERTLSALKQHDTRRHGRMMASIDLELGGNGHPSATGLYFTKVG 88
           GN+VF V++KF     +ER+LSALKQHD RRH R+++++DL LGGNGHP+  GLYF K+G
Sbjct: 31  GNYVFNVQHKFAG---KERSLSALKQHDARRHRRILSAVDLPLGGNGHPAEAGLYFAKIG 87

Query: 89  LGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSSTSGEIACSDNFC 148
           LG P  +YYVQVDTGSD+LWVNCA C +CPTKSDLG+KLTL+DP  S+++  I C D+FC
Sbjct: 88  LGNPPKDYYVQVDTGSDILWVNCANCDKCPTKSDLGVKLTLYDPQSSTSATRIYCDDDFC 147

Query: 149 RTTYNNRYPSCSPGVRCEYVVTYGDGSSTSGYFVRDIIQLNQASGNLKTAPLNSSVIFGC 208
             TYN     C+  + C+Y V YGDGSST+G+FV+D +Q ++ +GNL+T+  N SVIFGC
Sbjct: 148 AATYNGVLQGCTKDLPCQYSVVYGDGSSTAGFFVKDNLQFDRVTGNLQTSSANGSVIFGC 207

Query: 209 GNRQSGDLGSSTDAAVDGILGFGQANSSLLSQLAAAGNVRKEFAHCLDVVKGGGIFAIGD 268
           G +QSG+LG+S++A +DGILGFGQANSS++SQLAAAG V++ FAHCLD VKGGGIFAIG+
Sbjct: 208 GAKQSGELGTSSEA-LDGILGFGQANSSMISQLAAAGKVKRVFAHCLDNVKGGGIFAIGE 266

Query: 269 VVSPKVKTTPMVPNMPHYNVILEEVEVGGNPLDLPTSLLGTGDERGTIIDSGTTLAYLPP 328
           VVSPKV TTPMVPN PHYNV+++E+EVGGN L+LPT +  TGD RGTIIDSGTTLAYLP 
Sbjct: 267 VVSPKVNTTPMVPNQPHYNVVMKEIEVGGNVLELPTDIFDTGDRRGTIIDSGTTLAYLPE 326

Query: 329 MLYDLVLSQILDRQPGLKMHTVEEQFSCFQFSKNVDDAFPTVTFKFKGSLSLTVYPHEYL 388
           ++Y+ ++++I+  QPGLK+HTVEEQF+CFQ++ NV++ FP V F F GSLSLTV PH+YL
Sbjct: 327 VVYESMMTKIVSEQPGLKLHTVEEQFTCFQYTGNVNEGFPVVKFHFNGSLSLTVNPHDYL 386

Query: 389 FQIREDVWCIGWQNGGLQNHDGRQMILLGGTVYS 422
           FQI E+VWC GWQN G+Q+ DGR M LLG  V S
Sbjct: 387 FQIHEEVWCFGWQNSGMQSKDGRDMTLLGDLVLS 420

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359476754|ref|XP_002277058.2| PREDICTED: aspartic proteinase-like protein 2-like isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297735249|emb|CBI17611.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359476756|ref|XP_002277082.2| PREDICTED: aspartic proteinase-like protein 2-like isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449442641|ref|XP_004139089.1| PREDICTED: aspartic proteinase-like protein 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449476186|ref|XP_004154665.1| PREDICTED: LOW QUALITY PROTEIN: aspartic proteinase-like protein 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|147819672|emb|CAN76394.1| hypothetical protein VITISV_020864 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449442281|ref|XP_004138910.1| PREDICTED: aspartic proteinase-like protein 2-like [Cucumis sativus] gi|449506266|ref|XP_004162699.1| PREDICTED: aspartic proteinase-like protein 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356535252|ref|XP_003536162.1| PREDICTED: aspartic proteinase-like protein 2-like [Glycine max] Back     alignment and taxonomy information
>gi|363808270|ref|NP_001242239.1| uncharacterized protein LOC100801883 [Glycine max] gi|255641727|gb|ACU21134.1| unknown [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query427
TAIR|locus:2075512488 AT3G02740 [Arabidopsis thalian 0.885 0.774 0.527 1.8e-112
TAIR|locus:2183617482 AT5G36260 [Arabidopsis thalian 0.887 0.786 0.533 8.7e-111
TAIR|locus:2200365475 AT1G65240 [Arabidopsis thalian 0.880 0.791 0.525 6.1e-110
TAIR|locus:2198753485 AT1G05840 [Arabidopsis thalian 0.875 0.771 0.517 1.3e-107
TAIR|locus:2172661493 AT5G22850 [Arabidopsis thalian 0.840 0.728 0.403 2.1e-68
TAIR|locus:2200023492 AT1G08210 [Arabidopsis thalian 0.850 0.737 0.385 4.5e-66
TAIR|locus:2040545512 AT2G36670 [Arabidopsis thalian 0.824 0.687 0.378 1.4e-64
TAIR|locus:2101586430 AT3G42550 [Arabidopsis thalian 0.330 0.327 0.381 7.6e-34
TAIR|locus:2827921513 AT2G17760 [Arabidopsis thalian 0.765 0.637 0.291 6.2e-31
TAIR|locus:2102335452 AT3G25700 [Arabidopsis thalian 0.737 0.696 0.303 1.6e-29
TAIR|locus:2075512 AT3G02740 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1110 (395.8 bits), Expect = 1.8e-112, P = 1.8e-112
 Identities = 202/383 (52%), Positives = 269/383 (70%)

Query:    40 KAGGERERTLSALKQHDTRRHGRMMASIDLELGGNGHPSATGLYFTKVGLGTPTDEYYVQ 99
             K  G+R + L AL+ HD  RH R++++ID+ LGG+  P + GLYF K+GLGTP+ +++VQ
Sbjct:    42 KFAGKRVKDLGALRAHDVHRHSRLLSAIDIPLGGDSQPESIGLYFAKIGLGTPSRDFHVQ 101

Query:   100 VDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSSTSGEIACSDNFCRTTYNNRYPSC 159
             VDTGSD+LWVNCAGC RCP KSDL ++LT +D   SST+  ++CSDNFC  +Y N+   C
Sbjct:   102 VDTGSDILWVNCAGCIRCPRKSDL-VELTPYDVDASSTAKSVSCSDNFC--SYVNQRSEC 158

Query:   160 SPGVRCEYVVTYGDGSSTSGYFVRDIIQLNQASGNLKTAPLNSSVIFGCGNRQSGDLGSS 219
               G  C+YV+ YGDGSST+GY V+D++ L+  +GN +T   N ++IFGCG++QSG LG S
Sbjct:   159 HSGSTCQYVIMYGDGSSTNGYLVKDVVHLDLVTGNRQTGSTNGTIIFGCGSKQSGQLGES 218

Query:   220 TDAAVDGILGFXXXXXXXXXXXXXXXXVRKEFAHCLDVVKGGGIFAIGDVVSPKVKTTPM 279
               AAVDGI+GF                V++ FAHCLD   GGGIFAIG+VVSPKVKTTPM
Sbjct:   219 -QAAVDGIMGFGQSNSSFISQLASQGKVKRSFAHCLDNNNGGGIFAIGEVVSPKVKTTPM 277

Query:   280 VPNMPHYNVILEEVEVGGNPLDLPTSLLGTGDERGTIIDSGTTLAYLPPMLYDLVLSQIL 339
             +    HY+V L  +EVG + L+L ++   +GD++G IIDSGTTL YLP  +Y+ +L++IL
Sbjct:   278 LSKSAHYSVNLNAIEVGNSVLELSSNAFDSGDDKGVIIDSGTTLVYLPDAVYNPLLNEIL 337

Query:   340 DRQPGLKMHTVEEQFSCFQFSKNVDDAFPTVTFKFKGSLSLTVYPHEYLFQIREDVWCIG 399
                P L +HTV+E F+CF ++  +D  FPTVTF+F  S+SL VYP EYLFQ+RED WC G
Sbjct:   338 ASHPELTLHTVQESFTCFHYTDKLD-RFPTVTFQFDKSVSLAVYPREYLFQVREDTWCFG 396

Query:   400 WQNGGLQNHDGRQMILLGGTVYS 422
             WQNGGLQ   G  + +LG    S
Sbjct:   397 WQNGGLQTKGGASLTILGDMALS 419
GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA
GO:0006508 "proteolysis" evidence=IEA;ISS
GO:0031225 "anchored to membrane" evidence=TAS
GO:0005886 "plasma membrane" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
TAIR|locus:2183617 AT5G36260 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200365 AT1G65240 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2198753 AT1G05840 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2172661 AT5G22850 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200023 AT1G08210 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040545 AT2G36670 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2101586 AT3G42550 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2827921 AT2G17760 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2102335 AT3G25700 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.230.691
3rd Layer3.4.23.39LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00025051001
SubName- Full=Chromosome chr4 scaffold_32, whole genome shotgun sequence; (480 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query427
cd05476265 cd05476, pepsin_A_like_plant, Chroloplast Nucleoid 3e-52
PLN03146431 PLN03146, PLN03146, aspartyl protease family prote 2e-41
cd05471283 cd05471, pepsin_like, Pepsin-like aspartic proteas 1e-40
cd05472299 cd05472, cnd41_like, Chloroplast Nucleoids DNA-bin 5e-40
cd05475273 cd05475, nucellin_like, Nucellins, plant aspartic 8e-33
cd06096326 cd06096, Plasmepsin_5, Plasmepsins are a class of 3e-27
cd05489362 cd05489, xylanase_inhibitor_I_like, TAXI-I inhibit 5e-15
pfam00026316 pfam00026, Asp, Eukaryotic aspartyl protease 1e-13
cd05470109 cd05470, pepsin_retropepsin_like, Cellular and ret 3e-12
cd06097278 cd06097, Aspergillopepsin_like, Aspergillopepsin_l 3e-11
cd05488320 cd05488, Proteinase_A_fungi, Fungal Proteinase A , 7e-09
cd05477318 cd05477, gastricsin, Gastricsins, asparate proteas 7e-05
cd05490325 cd05490, Cathepsin_D2, Cathepsin_D2, pepsin family 1e-04
PTZ00165482 PTZ00165, PTZ00165, aspartyl protease; Provisional 2e-04
cd05478317 cd05478, pepsin_A, Pepsin A, aspartic protease pro 2e-04
cd05474295 cd05474, SAP_like, SAPs, pepsin-like proteinases s 3e-04
cd05487326 cd05487, renin_like, Renin stimulates production o 6e-04
cd06098317 cd06098, phytepsin, Phytepsin, a plant homolog of 0.001
>gnl|CDD|133143 cd05476, pepsin_A_like_plant, Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants Back     alignment and domain information 
 Score =  175 bits (446), Expect = 3e-52
 Identities = 92/346 (26%), Positives = 122/346 (35%), Gaps = 118/346 (34%)

Query: 83  YFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSSTSGEIA 142
           Y   + +GTP   + + VDTGSDL W  C                               
Sbjct: 2   YLVTLSIGTPPQPFSLIVDTGSDLTWTQC------------------------------- 30

Query: 143 CSDNFCRTTYNNRYPSCSPGVRCEYVVTYGDGSSTSGYFVRDIIQLNQASGNLKTAPLNS 202
                                 C Y  +YGDGSSTSG    +         ++       
Sbjct: 31  ----------------------CSYEYSYGDGSSTSGVLATETFTFG--DSSVSVPN--- 63

Query: 203 SVIFGCGNRQSGDLGSSTDAAVDGILGFGQANSSLLSQLAAAGNVRKEFAHCL---DVVK 259
            V FGCG    G     +    DGILG G+   SL+SQL + GN    F++CL   D   
Sbjct: 64  -VAFGCGTDNEGG----SFGGADGILGLGRGPLSLVSQLGSTGNK---FSYCLVPHDDTG 115

Query: 260 GGGIFAIGD---VVSPKVKTTPMVPNM---PHYNVILEEVEVGGNPLDLPTSLLGTGDER 313
           G     +GD   +    V  TP+V N     +Y V LE + VGG  L +P S+     + 
Sbjct: 116 GSSPLILGDAADLGGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDG 175

Query: 314 --GTIIDSGTTLAYLPPMLYDLVLSQILDRQPGLKMHTVEEQFSCFQFSKNVDDAFPTVT 371
             GTIIDSGTTL YLP                                    D A+P +T
Sbjct: 176 SGGTIIDSGTTLTYLP------------------------------------DPAYPDLT 199

Query: 372 FKFKGSLSLTVYPHEYLFQIREDVWCIGWQNGGLQNHDGRQMILLG 417
             F G   L + P  Y   + E V C+   +          + +LG
Sbjct: 200 LHFDGGADLELPPENYFVDVGEGVVCLAILSSSSGG-----VSILG 240

This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which have at least six residues in length with hydrophobic residues in both the P1 and P1' positions. The active site is located at the groove formed by the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors in the active site. Specificity is determined by nearest-neighbor hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. The enzymes are mostly secreted from cells as inactive proenzymes that activate autocatalytically at acidic pH. Length = 265
>gnl|CDD|178691 PLN03146, PLN03146, aspartyl protease family protein; Provisional Back     alignment and domain information
>gnl|CDD|133138 cd05471, pepsin_like, Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH Back     alignment and domain information
>gnl|CDD|133139 cd05472, cnd41_like, Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase Back     alignment and domain information
>gnl|CDD|133142 cd05475, nucellin_like, Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation Back     alignment and domain information
>gnl|CDD|133160 cd06096, Plasmepsin_5, Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite Back     alignment and domain information
>gnl|CDD|133156 cd05489, xylanase_inhibitor_I_like, TAXI-I inhibits degradation of xylan in the cell wall Back     alignment and domain information
>gnl|CDD|215663 pfam00026, Asp, Eukaryotic aspartyl protease Back     alignment and domain information
>gnl|CDD|133137 cd05470, pepsin_retropepsin_like, Cellular and retroviral pepsin-like aspartate proteases Back     alignment and domain information
>gnl|CDD|133161 cd06097, Aspergillopepsin_like, Aspergillopepsin_like, aspartic proteases of fungal origin Back     alignment and domain information
>gnl|CDD|133155 cd05488, Proteinase_A_fungi, Fungal Proteinase A , aspartic proteinase superfamily Back     alignment and domain information
>gnl|CDD|133144 cd05477, gastricsin, Gastricsins, asparate proteases produced in gastric mucosa Back     alignment and domain information
>gnl|CDD|133157 cd05490, Cathepsin_D2, Cathepsin_D2, pepsin family of proteinases Back     alignment and domain information
>gnl|CDD|240300 PTZ00165, PTZ00165, aspartyl protease; Provisional Back     alignment and domain information
>gnl|CDD|133145 cd05478, pepsin_A, Pepsin A, aspartic protease produced in gastric mucosa of mammals Back     alignment and domain information
>gnl|CDD|133141 cd05474, SAP_like, SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins Back     alignment and domain information
>gnl|CDD|133154 cd05487, renin_like, Renin stimulates production of angiotensin and thus affects blood pressure Back     alignment and domain information
>gnl|CDD|133162 cd06098, phytepsin, Phytepsin, a plant homolog of mammalian lysosomal pepsins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 427
PLN03146431 aspartyl protease family protein; Provisional 100.0
KOG1339398 consensus Aspartyl protease [Posttranslational mod 100.0
PTZ00165482 aspartyl protease; Provisional 100.0
cd05490325 Cathepsin_D2 Cathepsin_D2, pepsin family of protei 100.0
cd05477318 gastricsin Gastricsins, asparate proteases produce 100.0
cd05486316 Cathespin_E Cathepsin E, non-lysosomal aspartic pr 100.0
cd05478317 pepsin_A Pepsin A, aspartic protease produced in g 100.0
cd05472299 cnd41_like Chloroplast Nucleoids DNA-binding Prote 100.0
cd06096326 Plasmepsin_5 Plasmepsins are a class of aspartic p 100.0
cd06098317 phytepsin Phytepsin, a plant homolog of mammalian 100.0
cd05487326 renin_like Renin stimulates production of angioten 100.0
cd05485329 Cathepsin_D_like Cathepsin_D_like, pepsin family o 100.0
cd05489362 xylanase_inhibitor_I_like TAXI-I inhibits degradat 100.0
cd05488320 Proteinase_A_fungi Fungal Proteinase A , aspartic 100.0
PTZ00147453 plasmepsin-1; Provisional 100.0
PTZ00013450 plasmepsin 4 (PM4); Provisional 100.0
cd05473364 beta_secretase_like Beta-secretase, aspartic-acid 100.0
cd05475273 nucellin_like Nucellins, plant aspartic proteases 100.0
cd05476265 pepsin_A_like_plant Chroloplast Nucleoids DNA-bind 100.0
cd06097278 Aspergillopepsin_like Aspergillopepsin_like, aspar 100.0
PF00026317 Asp: Eukaryotic aspartyl protease The Prosite entr 100.0
cd05474295 SAP_like SAPs, pepsin-like proteinases secreted fr 100.0
cd05471283 pepsin_like Pepsin-like aspartic proteases, biloba 100.0
PF14543164 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 99.97
cd05470109 pepsin_retropepsin_like Cellular and retroviral pe 99.89
PF14541161 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 99.84
cd0548396 retropepsin_like_bacteria Bacterial aspartate prot 97.76
TIGR02281121 clan_AA_DTGA clan AA aspartic protease, TIGR02281 95.56
PF1365090 Asp_protease_2: Aspartyl protease 94.38
cd05479124 RP_DDI RP_DDI; retropepsin-like domain of DNA dama 93.02
cd0548491 retropepsin_like_LTR_2 Retropepsins_like_LTR, peps 92.7
TIGR02281121 clan_AA_DTGA clan AA aspartic protease, TIGR02281 88.87
PF1397572 gag-asp_proteas: gag-polyprotein putative aspartyl 88.72
PF1365090 Asp_protease_2: Aspartyl protease 87.79
PF12384177 Peptidase_A2B: Ty3 transposon peptidase; InterPro: 86.04
PF1397572 gag-asp_proteas: gag-polyprotein putative aspartyl 85.37
PF00077100 RVP: Retroviral aspartyl protease The Prosite entr 84.93
cd0548491 retropepsin_like_LTR_2 Retropepsins_like_LTR, peps 84.6
cd0548396 retropepsin_like_bacteria Bacterial aspartate prot 84.37
cd0609586 RP_RTVL_H_like Retropepsin of the RTVL_H family of 80.13
>PLN03146 aspartyl protease family protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.7e-59  Score=467.36  Aligned_cols=372  Identities=27%  Similarity=0.484  Sum_probs=293.4

Q ss_pred             ccceeEEEEeccCCCCC-------ChhhHHHHHHHhHhhhhhhccc--cccccCCCCCCCCCceEEEEEEeCCCCceEEE
Q 014294           28 MGNFVFEVENKFKAGGE-------RERTLSALKQHDTRRHGRMMAS--IDLELGGNGHPSATGLYFTKVGLGTPTDEYYV   98 (427)
Q Consensus        28 ~~~~~~~l~~~~~~~~~-------~~~~~~~~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~~~Y~~~i~vGtP~q~~~v   98 (427)
                      ...++++|.|+.++...       ..+.+.+..+|+++|.+++.+.  ...++.. .....+++|+++|.||||||++.|
T Consensus        22 ~~~~~~~l~h~~~~~sp~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Y~v~i~iGTPpq~~~v  100 (431)
T PLN03146         22 KGGFTVDLIHRDSPKSPFYNPSETPSQRLRNAFRRSISRVNHFRPTDASPNDPQS-DLISNGGEYLMNISIGTPPVPILA  100 (431)
T ss_pred             CCceEEEEEeCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHhhccccCCcccc-CcccCCccEEEEEEcCCCCceEEE
Confidence            35788999999875321       2355667777788777666321  2234432 223467899999999999999999


Q ss_pred             EEEcCCCceeEeCCCCCCCCCCCCCCCcccCCCCCCCCCcceecCCCcccCCcCCCCCCCCCCCCcceeeEEcCCCCeee
Q 014294           99 QVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSSTSGEIACSDNFCRTTYNNRYPSCSPGVRCEYVVTYGDGSSTS  178 (427)
Q Consensus        99 ~lDTGS~~~Wv~~~~C~~C~~~~~~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~~~~c~~~~~~~~~~~Y~~g~~~~  178 (427)
                      ++||||+++||+|.+|..|..+.     ++.|||++|+||+.++|+++.|.....  ...|..++.|.|.+.|+||+.+.
T Consensus       101 i~DTGS~l~Wv~C~~C~~C~~~~-----~~~fdps~SST~~~~~C~s~~C~~~~~--~~~c~~~~~c~y~i~Ygdgs~~~  173 (431)
T PLN03146        101 IADTGSDLIWTQCKPCDDCYKQV-----SPLFDPKKSSTYKDVSCDSSQCQALGN--QASCSDENTCTYSYSYGDGSFTK  173 (431)
T ss_pred             EECCCCCcceEcCCCCcccccCC-----CCcccCCCCCCCcccCCCCcccccCCC--CCCCCCCCCCeeEEEeCCCCcee
Confidence            99999999999999999998764     379999999999999999999986543  23576667799999999999889


Q ss_pred             eeEEEEEEEEcccCCCCcccCCCceeeEEeeecccCCCCCCCCCCcceeeecCCCCCcHHHHHHhcCCCCCceeeecccc
Q 014294          179 GYFVRDIIQLNQASGNLKTAPLNSSVIFGCGNRQSGDLGSSTDAAVDGILGFGQANSSLLSQLAAAGNVRKEFAHCLDVV  258 (427)
Q Consensus       179 G~~~~D~v~i~~~~~~~~~~~~~~~~~fG~~~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~l~~~~~i~~~Fs~~l~~~  258 (427)
                      |.+++|+|+|++..+.   ...++++.|||++...+.|.    ...+||||||++..|++.||...  ++++||+||.+.
T Consensus       174 G~l~~Dtltlg~~~~~---~~~v~~~~FGc~~~~~g~f~----~~~~GilGLG~~~~Sl~sql~~~--~~~~FSycL~~~  244 (431)
T PLN03146        174 GNLAVETLTIGSTSGR---PVSFPGIVFGCGHNNGGTFD----EKGSGIVGLGGGPLSLISQLGSS--IGGKFSYCLVPL  244 (431)
T ss_pred             eEEEEEEEEeccCCCC---cceeCCEEEeCCCCCCCCcc----CCCceeEecCCCCccHHHHhhHh--hCCcEEEECCCC
Confidence            9999999999875332   12456899999998876552    24789999999999999999763  556999999753


Q ss_pred             ----CCcceEEeCCcCC---CCceeecCCCC--CCcceEEEEEEEECCEEeeCCCCCcccCCCCcEEEeccccccccCHH
Q 014294          259 ----KGGGIFAIGDVVS---PKVKTTPMVPN--MPHYNVILEEVEVGGNPLDLPTSLLGTGDERGTIIDSGTTLAYLPPM  329 (427)
Q Consensus       259 ----~~~G~l~~Gg~d~---~~~~~~p~~~~--~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~iiDSGts~~~lp~~  329 (427)
                          ...|.|+||+...   ..+.|+|++.+  +.+|.|.|++|+||++.+.++...|...+.+++||||||++++||++
T Consensus       245 ~~~~~~~g~l~fG~~~~~~~~~~~~tPl~~~~~~~~y~V~L~gIsVgg~~l~~~~~~~~~~~~g~~iiDSGTt~t~Lp~~  324 (431)
T PLN03146        245 SSDSNGTSKINFGTNAIVSGSGVVSTPLVSKDPDTFYYLTLEAISVGSKKLPYTGSSKNGVEEGNIIIDSGTTLTLLPSD  324 (431)
T ss_pred             CCCCCCcceEEeCCccccCCCCceEcccccCCCCCeEEEeEEEEEECCEECcCCccccccCCCCcEEEeCCccceecCHH
Confidence                2479999998542   23889999843  46899999999999999988776664334567999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCcccc-cCCCCceeeecCCCCccCceEEEEecCCcEEEECCCceEEEeCCceEEEEEEeCCCCCC
Q 014294          330 LYDLVLSQILDRQPGLKMHT-VEEQFSCFQFSKNVDDAFPTVTFKFKGSLSLTVYPHEYLFQIREDVWCIGWQNGGLQNH  408 (427)
Q Consensus       330 ~~~~l~~~~~~~~~~~~~~~-~~~~~~C~~~~~~~~~~~P~i~f~f~gg~~~~l~~~~y~~~~~~~~~Cl~i~~~~~~~~  408 (427)
                      +|++|.+++.+.+....... ......||.....  ..+|+|+|+| +|+.+.|++++|++...++..|+++....    
T Consensus       325 ~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~--~~~P~i~~~F-~Ga~~~l~~~~~~~~~~~~~~Cl~~~~~~----  397 (431)
T PLN03146        325 FYSELESAVEEAIGGERVSDPQGLLSLCYSSTSD--IKLPIITAHF-TGADVKLQPLNTFVKVSEDLVCFAMIPTS----  397 (431)
T ss_pred             HHHHHHHHHHHHhccccCCCCCCCCCccccCCCC--CCCCeEEEEE-CCCeeecCcceeEEEcCCCcEEEEEecCC----
Confidence            99999999987765322111 1123689975332  4689999999 68999999999999877777999987542    


Q ss_pred             CCCCeEEEcccccccccC
Q 014294          409 DGRQMILLGGTVYSCFML  426 (427)
Q Consensus       409 ~~~~~~ilG~~fLr~~yv  426 (427)
                         +.||||+.|||++||
T Consensus       398 ---~~~IlG~~~q~~~~v  412 (431)
T PLN03146        398 ---SIAIFGNLAQMNFLV  412 (431)
T ss_pred             ---CceEECeeeEeeEEE
Confidence               359999999999997

>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PTZ00165 aspartyl protease; Provisional Back     alignment and domain information
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases Back     alignment and domain information
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa Back     alignment and domain information
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease Back     alignment and domain information
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals Back     alignment and domain information
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase Back     alignment and domain information
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite Back     alignment and domain information
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins Back     alignment and domain information
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure Back     alignment and domain information
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases Back     alignment and domain information
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall Back     alignment and domain information
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily Back     alignment and domain information
>PTZ00147 plasmepsin-1; Provisional Back     alignment and domain information
>PTZ00013 plasmepsin 4 (PM4); Provisional Back     alignment and domain information
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease Back     alignment and domain information
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation Back     alignment and domain information
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants Back     alignment and domain information
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin Back     alignment and domain information
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077 Back     alignment and domain information
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins Back     alignment and domain information
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH Back     alignment and domain information
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A Back     alignment and domain information
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases Back     alignment and domain information
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A Back     alignment and domain information
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family Back     alignment and domain information
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family Back     alignment and domain information
>PF13650 Asp_protease_2: Aspartyl protease Back     alignment and domain information
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein Back     alignment and domain information
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases Back     alignment and domain information
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family Back     alignment and domain information
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease Back     alignment and domain information
>PF13650 Asp_protease_2: Aspartyl protease Back     alignment and domain information
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease Back     alignment and domain information
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases Back     alignment and domain information
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family Back     alignment and domain information
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query427
1g0v_A329 The Structure Of Proteinase A Complexed With A Ia3 2e-07
1dp5_A329 The Structure Of Proteinase A Complexed With A Ia3 3e-07
2jxr_A329 Structure Of Yeast Proteinase A Length = 329 3e-07
1uh7_A325 Crystal Structure Of Rhizopuspepsin At Ph 4.6 Lengt 3e-05
3apr_E325 Binding Of A Reduced Peptide Inhibitor To The Aspar 8e-05
3vla_A413 Crystal Structure Of Edgp Length = 413 3e-04
3vlb_A413 Crystal Structure Of Xeg-Edgp Length = 413 3e-04
1mpp_A361 X-Ray Analyses Of Aspartic Proteinases. V. Structur 6e-04
4aa9_A320 Camel Chymosin At 1.6a Resolution Length = 320 7e-04
3psg_A370 The High Resolution Crystal Structure Of Porcine Pe 7e-04
2psg_A370 Refined Structure Of Porcine Pepsinogen At 1.8 Angs 9e-04
>pdb|1G0V|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant, Mvv Length = 329 Back     alignment and structure 
Iteration: 1

 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 76/320 (23%), Positives = 122/320 (38%), Gaps = 64/320 (20%)
Query: 83  YFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSSTSGEIA 142
           Y+T + LGTP   + V +DTGS  LWV    C                        G +A
Sbjct: 15  YYTDITLGTPPQNFKVILDTGSSNLWVPSNEC------------------------GSLA 50
Query: 143 CSDNFCRTTYNNRYPSCSPGVRCEYVVTYGDGSSTSGYFVRDIIQLNQAS---GNLKTAP 199
           C   F  + Y++   S       E+ + YG G S  GY  +D + +   +    +   A 
Sbjct: 51  C---FLHSKYDHEASSSYKANGTEFAIQYGTG-SLEGYISQDTLSIGDLTIPKQDFAEAT 106
Query: 200 LNSSVIFGCGNRQSGDLGSSTDA-AVDGILGFXXXXXXXXXXXXXXXXVRKEFAHCL-DV 257
               + F  G +  G LG   D  +VD ++                    K FA  L D 
Sbjct: 107 SEPGLTFAFG-KFDGILGLGYDTISVDKVV------PPFYNAIQQDLLDEKRFAFYLGDT 159
Query: 258 VK---GGGIFAIGDVVSPKVK---TTPMVPNMPHYNVILEEVEVGGNPLDLPTSLLGTGD 311
            K    GG    G +   K K   T   V    ++ V  E + +G    +L        +
Sbjct: 160 SKDTENGGEATFGGIDESKFKGDITWLPVRRKAYWEVKFEGIGLGDEYAEL--------E 211
Query: 312 ERGTIIDSGTTLAYLPPMLYDLVLSQILDRQPGLKMHTVEEQFSCFQFSKNVDDAFPTVT 371
             G  ID+GT+L  LP  L +++ ++I  ++     +T++    C     N  D  P + 
Sbjct: 212 SHGAAIDTGTSLITLPSGLAEMINAEIGAKKGSTGQYTLD----C-----NTRDNLPDLI 262
Query: 372 FKFKGSLSLTVYPHEYLFQI 391
           F F G  + T+ P++Y  ++
Sbjct: 263 FNFNG-YNFTIGPYDYTLEV 281
>pdb|1DP5|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant Inhibitor Length = 329 Back     alignment and structure
>pdb|2JXR|A Chain A, Structure Of Yeast Proteinase A Length = 329 Back     alignment and structure
>pdb|1UH7|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 4.6 Length = 325 Back     alignment and structure
>pdb|3APR|E Chain E, Binding Of A Reduced Peptide Inhibitor To The Aspartic Proteinase From Rhizopus Chinensis. Implications For A Mechanism Of Action Length = 325 Back     alignment and structure
>pdb|3VLA|A Chain A, Crystal Structure Of Edgp Length = 413 Back     alignment and structure
>pdb|3VLB|A Chain A, Crystal Structure Of Xeg-Edgp Length = 413 Back     alignment and structure
>pdb|1MPP|A Chain A, X-Ray Analyses Of Aspartic Proteinases. V. Structure And Refinement At 2.0 Angstroms Resolution Of The Aspartic Proteinase From Mucor Pusillus Length = 361 Back     alignment and structure
>pdb|4AA9|A Chain A, Camel Chymosin At 1.6a Resolution Length = 320 Back     alignment and structure
>pdb|3PSG|A Chain A, The High Resolution Crystal Structure Of Porcine Pepsinogen Length = 370 Back     alignment and structure
>pdb|2PSG|A Chain A, Refined Structure Of Porcine Pepsinogen At 1.8 Angstroms Resolution Length = 370 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query427
3aup_A403 SBG7S, BG, basic 7S globulin; pepsin-like fold, pl 1e-75
1t6e_X381 Xylanase inhibitor; two beta-barrel domain structu 6e-72
3vla_A413 EDGP; extracellular, inhibitor, plant protein; HET 3e-68
2ewy_A383 Beta-secretase 2; BACE2, aspartic protease, hydrol 1e-26
3pvk_A342 Candidapepsin-2; hydrolase; 1.27A {Candida albican 2e-26
3lpj_A455 Beta-secretase 1; alzheimer'S, aspartyl protease, 1e-25
1j71_A334 Candidapepsin, aspartic proteinase; candida tropic 2e-25
2qzx_A342 Candidapepsin-5; aspartic proteinase, aspartyl pro 1e-24
2qp8_A395 Beta-secretase 1; BACE1, protease, alternative spl 5e-24
3c9x_A329 Trichoderma reesei aspartic protease; aspartic pro 2e-23
1oew_A329 Endothiapepsin; hydrolase, aspartic proteinase mec 2e-23
3fv3_A339 SAPP1P-secreted aspartic protease 1; secreted aspa 9e-23
1ibq_A325 Aspergillopepsin; aspartic proteinase, hydrolase; 7e-22
1bxo_A323 Protein (penicillopepsin); hydrolase, phosphonate 9e-22
1am5_A324 Pepsin, acid proteinase; aspartyl protease, hydrol 3e-21
1mpp_A361 Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu 3e-21
3cms_A323 Chymosin B; hydrolase, acid proteinase; 2.00A {Bos 6e-21
1htr_B329 Gastricsin; aspartyl protease; 1.62A {Homo sapiens 2e-20
1izd_A323 Aspartic proteinase; sugar binding, acid protease, 2e-20
3k1w_A341 Renin; protease, alternative splicing, aspartyl pr 4e-20
1tzs_A351 Cathepsin E; hydrolase, aspartic protease, activat 7e-20
1dpj_A329 Proteinase A; proteinase A, hydrolase-hydrolase in 9e-20
2apr_A325 Rhizopuspepsin; hydrolase (aspartic proteinase); 1 2e-19
2x0b_A383 Renin; hydrolase-hormone complex, hydrolase hormon 2e-19
3psg_A370 Pepsinogen; hydrolase(acid proteinase zymogen); 1. 1e-18
1miq_A375 Plasmepsin; aspartic proteinase zymogen, domain op 6e-18
3qvc_A451 Histo-aspartic protease; HAP, plasmepsin, zymogen, 2e-17
2bju_A453 Plasmepsin II; aspartic proteinase, drug design, m 2e-17
1qdm_A 478 Prophytepsin; aspartic proteinases, saposin-like d 2e-16
1b5f_A239 Protein (cardosin A); hydrolase, aspartic proteina 2e-16
1yg9_A330 Aspartic protease BLA G 2; allegren, hydrolase, al 8e-16
1wkr_A340 Polyporopepsin; hydrolase, hydrolase-hydrolase inh 2e-14
1lya_A97 Cathepsin D; lysosomal aspartic protease; HET: NAG 1e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-06
1lya_B241 Cathepsin D; lysosomal aspartic protease; HET: NAG 4e-04
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} Length = 403 Back     alignment and structure
 Score =  240 bits (614), Expect = 1e-75
 Identities = 70/361 (19%), Positives = 117/361 (32%), Gaps = 35/361 (9%)

Query: 78  SATGLYFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSST 137
            +TGL++  +   TP  +  V VD   + LWVNC       T             ++ S 
Sbjct: 18  GSTGLHWANLQKRTPLMQVPVLVDLNGNHLWVNCEQQYSSKTYQAP-----FCHSTQCSR 72

Query: 138 SGEIACSDNFCRTTYNNRYPSCSPGVRCEYVVTYGDGSSTSGYFVRDIIQLNQASGNLKT 197
           +    C      +      P C                +  G    D++ ++   G+ + 
Sbjct: 73  ANTHQCLSCPAASR-----PGCHKNTCGLMSTNPITQQTGLGELGEDVLAIHATQGSTQQ 127

Query: 198 APLNSSV---IFGCGNRQSGDLGSSTDAAVDGILGFGQANSSLLSQLAAAGNVRKEFAHC 254
                +V   +F C        G        G+ G G A  SL +QLA+   ++++F  C
Sbjct: 128 LGPLVTVPQFLFSCAPSFLVQKGLP--RNTQGVAGLGHAPISLPNQLASHFGLQRQFTTC 185

Query: 255 L-DVVKGGGIFAIGD-----------VVSPKVKTTPMVPN-MPHYNVILEEVEVGGN--- 298
           L       G    GD            +   +  TP+       YNV +  + +  +   
Sbjct: 186 LSRYPTSKGAIIFGDAPNNMRQFQNQDIFHDLAFTPLTITLQGEYNVRVNSIRINQHSVF 245

Query: 299 PLDLPTSLLGTGDERGTIIDSGTTLAYLPPMLYDLVLSQILDRQPGLKMHTVEEQFS-CF 357
           PL+  +S +      GT+I + T    L   +Y         + P          F  CF
Sbjct: 246 PLNKISSTIVGSTSGGTMISTSTPHMVLQQSVYQAFTQVFAQQLPKQAQVKSVAPFGLCF 305

Query: 358 QFSKNVDDAFPTVTFKFKGSLSLTVYPHEYLFQIREDVWCIGWQNGGLQNHDGRQMILLG 417
             +K        +           +   + + Q +  V C+G  NGG      R  I LG
Sbjct: 306 NSNKINAYPSVDLVMDKPNGPVWRISGEDLMVQAQPGVTCLGVMNGG---MQPRAEITLG 362

Query: 418 G 418
            
Sbjct: 363 A 363
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A Length = 381 Back     alignment and structure
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A Length = 413 Back     alignment and structure
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens} Length = 383 Back     alignment and structure
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A* Length = 342 Back     alignment and structure
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A* Length = 455 Back     alignment and structure
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2 Length = 334 Back     alignment and structure
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans} Length = 342 Back     alignment and structure
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ... Length = 395 Back     alignment and structure
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A* Length = 329 Back     alignment and structure
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ... Length = 329 Back     alignment and structure
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} PDB: 3tne_A* Length = 339 Back     alignment and structure
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2 Length = 325 Back     alignment and structure
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A Length = 323 Back     alignment and structure
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2 Length = 324 Back     alignment and structure
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A* Length = 361 Back     alignment and structure
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A Length = 323 Back     alignment and structure
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A Length = 329 Back     alignment and structure
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A* Length = 323 Back     alignment and structure
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ... Length = 341 Back     alignment and structure
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} Length = 351 Back     alignment and structure
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A* Length = 329 Back     alignment and structure
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A Length = 325 Back     alignment and structure
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens} Length = 383 Back     alignment and structure
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A Length = 370 Back     alignment and structure
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A* Length = 375 Back     alignment and structure
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A* Length = 451 Back     alignment and structure
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ... Length = 453 Back     alignment and structure
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2 Length = 478 Back     alignment and structure
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Length = 239 Back     alignment and structure
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A* Length = 330 Back     alignment and structure
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2 Length = 340 Back     alignment and structure
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A* Length = 97 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B* Length = 241 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query427
3vla_A413 EDGP; extracellular, inhibitor, plant protein; HET 100.0
3psg_A370 Pepsinogen; hydrolase(acid proteinase zymogen); 1. 100.0
2x0b_A383 Renin; hydrolase-hormone complex, hydrolase hormon 100.0
2apr_A325 Rhizopuspepsin; hydrolase (aspartic proteinase); 1 100.0
3aup_A403 SBG7S, BG, basic 7S globulin; pepsin-like fold, pl 100.0
1dpj_A329 Proteinase A; proteinase A, hydrolase-hydrolase in 100.0
3cms_A323 Chymosin B; hydrolase, acid proteinase; 2.00A {Bos 100.0
4aa9_A320 Chymosin; hydrolase, aspartic peptidase, rennet; H 100.0
1tzs_A351 Cathepsin E; hydrolase, aspartic protease, activat 100.0
1am5_A324 Pepsin, acid proteinase; aspartyl protease, hydrol 100.0
1htr_B329 Gastricsin; aspartyl protease; 1.62A {Homo sapiens 100.0
1j71_A334 Candidapepsin, aspartic proteinase; candida tropic 100.0
1qdm_A478 Prophytepsin; aspartic proteinases, saposin-like d 100.0
3c9x_A329 Trichoderma reesei aspartic protease; aspartic pro 100.0
1mpp_A361 Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu 100.0
1oew_A329 Endothiapepsin; hydrolase, aspartic proteinase mec 100.0
3k1w_A341 Renin; protease, alternative splicing, aspartyl pr 100.0
2qzx_A342 Candidapepsin-5; aspartic proteinase, aspartyl pro 100.0
1miq_A375 Plasmepsin; aspartic proteinase zymogen, domain op 100.0
1t6e_X381 Xylanase inhibitor; two beta-barrel domain structu 100.0
3fv3_A339 SAPP1P-secreted aspartic protease 1; secreted aspa 100.0
3lpj_A455 Beta-secretase 1; alzheimer'S, aspartyl protease, 100.0
3pvk_A342 Candidapepsin-2; hydrolase; 1.27A {Candida albican 100.0
2bju_A453 Plasmepsin II; aspartic proteinase, drug design, m 100.0
3qvc_A451 Histo-aspartic protease; HAP, plasmepsin, zymogen, 100.0
2ewy_A383 Beta-secretase 2; BACE2, aspartic protease, hydrol 100.0
2qp8_A395 Beta-secretase 1; BACE1, protease, alternative spl 100.0
3vf3_A402 Beta-secretase 1; structure-based drug design, hyd 100.0
1yg9_A330 Aspartic protease BLA G 2; allegren, hydrolase, al 100.0
1ibq_A325 Aspergillopepsin; aspartic proteinase, hydrolase; 100.0
1izd_A323 Aspartic proteinase; sugar binding, acid protease, 100.0
1bxo_A323 Protein (penicillopepsin); hydrolase, phosphonate 100.0
1wkr_A340 Polyporopepsin; hydrolase, hydrolase-hydrolase inh 100.0
1b5f_A239 Protein (cardosin A); hydrolase, aspartic proteina 100.0
1lya_B241 Cathepsin D; lysosomal aspartic protease; HET: NAG 100.0
1lya_A97 Cathepsin D; lysosomal aspartic protease; HET: NAG 99.88
1b5f_B87 Protein (cardosin A); hydrolase, aspartic proteina 99.09
2hs1_A99 HIV-1 protease; ultra-high resolution active site 88.11
1fmb_A104 EIAV protease; hydrolase (acid proteinase), RNA-di 87.38
3ec0_A99 Protease; HIV-2, inhibitor, hydrolase; HET: GRL; 1 85.99
3liy_A116 Protease; hydrolase, hydrolase-hydrolase inhibitor 84.71
2i1a_A148 DNA damage-inducible protein DDI1; acid protease f 81.99
2hah_A116 Protease, retropepsin; retroviral, aspartyl, hydro 80.12
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A Back     alignment and structure
Probab=100.00  E-value=2.2e-56  Score=443.40  Aligned_cols=333  Identities=22%  Similarity=0.375  Sum_probs=264.7

Q ss_pred             ccccccCCCCCCCCCceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCcccCCCCCCCCCcceecCCC
Q 014294           66 SIDLELGGNGHPSATGLYFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSSTSGEIACSD  145 (427)
Q Consensus        66 ~~~~~~~~~~~~~~~~~Y~~~i~vGtP~q~~~v~lDTGS~~~Wv~~~~C~~C~~~~~~~~~~~~y~p~~Sst~~~~~c~~  145 (427)
                      ...+|++++   ..+++|+++|.||||||++.|++||||+++||+|.+|                  .+|+||+.+.|.+
T Consensus         8 ~~~~pv~~d---~~~~~Y~~~i~iGTPpq~~~v~~DTGS~~lWv~c~~c------------------~~Sst~~~v~C~s   66 (413)
T 3vla_A            8 ALVVPVKKD---ASTLQYVTTINQRTPLVSENLVVDLGGRFLWVDCDQN------------------YVSSTYRPVRCRT   66 (413)
T ss_dssp             EEEEEEEEC---TTTCCEEEEEEETTTTEEEEEEEETTCSSEEEECSSS------------------CCCTTCEECBTTS
T ss_pred             cEEEEeeec---CCCCeEEEEEEcCCCCcceEEEEeCCChhhhcccCCC------------------CCCCCcCccCCCc
Confidence            345677653   3679999999999999999999999999999999765                  3699999999999


Q ss_pred             cccCCcCCCC--------CCCCCCCCcceeeEEc-CCCCeeeeeEEEEEEEEcccCCCCc-ccCCCceeeEEeeecccCC
Q 014294          146 NFCRTTYNNR--------YPSCSPGVRCEYVVTY-GDGSSTSGYFVRDIIQLNQASGNLK-TAPLNSSVIFGCGNRQSGD  215 (427)
Q Consensus       146 ~~C~~~~~~~--------~~~c~~~~~~~~~~~Y-~~g~~~~G~~~~D~v~i~~~~~~~~-~~~~~~~~~fG~~~~~~~~  215 (427)
                      +.|.......        ...|. ++.|.|.+.| ++++.+.|++++|+|+|+..++... ....++++.|||++.+...
T Consensus        67 ~~C~~~~~~~~~~c~s~~~~~c~-~~~c~~~i~Y~~d~~~~~G~l~~Dtv~l~~~~g~~~~~~~~v~~~~FGc~~~~~~~  145 (413)
T 3vla_A           67 SQCSLSGSIACGDCFNGPRPGCN-NNTCGVFPENPVINTATGGEVAEDVVSVESTDGSSSGRVVTVPRFIFSCAPTSLLQ  145 (413)
T ss_dssp             HHHHHTTCCEEECCSSCCBTTBC-SSEEEECCEETTTTEECCEEEEEEEEEEEEECSSBEEEEEEEEEEEEEEECGGGGT
T ss_pred             ccccccccCCCcccccCCCCCCC-CCcCcceeecCcCCceeeeEEEEEEEEecccCCCCcccceeeCCEEEECccccccc
Confidence            9997654321        13454 4679999999 4888889999999999986543311 0124568999999986322


Q ss_pred             CCCCCCCCcceeeecCCCCCcHHHHHHhcCCCCCceeeecccc-CCcceEEeCCcCC---------CC-ceeecCCCCC-
Q 014294          216 LGSSTDAAVDGILGFGQANSSLLSQLAAAGNVRKEFAHCLDVV-KGGGIFAIGDVVS---------PK-VKTTPMVPNM-  283 (427)
Q Consensus       216 ~~~~~~~~~~GIlGLg~~~~s~~~~l~~~~~i~~~Fs~~l~~~-~~~G~l~~Gg~d~---------~~-~~~~p~~~~~-  283 (427)
                      .   .....|||||||++.+|++.||.+++.++++||+||.+. +.+|.|+||++|.         .. ++|+|++.++ 
T Consensus       146 g---~~~~~dGIlGLg~~~lSl~sql~~~~~i~~~FS~cL~~~~~~~G~l~fGg~~~~~~p~~~~~g~~l~~tPl~~~~~  222 (413)
T 3vla_A          146 N---LASGVVGMAGLGRTRIALPSQFASAFSFKRKFAMCLSGSTSSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPV  222 (413)
T ss_dssp             T---SCTTCCEEEECSSSSSSHHHHHHHHHTCCSEEEEECCSCSSSCEEEEEESCCEEETTTEEECTTTSEEEECBCCSS
T ss_pred             C---cccccccccccCCCCcchHHHHhhhcCCCceEEEeCCCCCCCceEEEECCCcccccccccccCCceeEeecccCCc
Confidence            1   234689999999999999999999988889999999974 5679999999874         24 9999998653 


Q ss_pred             ------------CcceEEEEEEEECCEEeeCCCCCcccC--CCCcEEEeccccccccCHHHHHHHHHHHHHhCC--CCcc
Q 014294          284 ------------PHYNVILEEVEVGGNPLDLPTSLLGTG--DERGTIIDSGTTLAYLPPMLYDLVLSQILDRQP--GLKM  347 (427)
Q Consensus       284 ------------~~~~v~l~~i~v~~~~~~~~~~~~~~~--~~~~~iiDSGts~~~lp~~~~~~l~~~~~~~~~--~~~~  347 (427)
                                  .+|+|+|++|+||++.+.++...|..+  +.+++||||||++++||.++|++|.++|.+...  ..+.
T Consensus       223 ~~~~~~~~~~~~~~y~V~l~~IsVgg~~l~~~~~~~~~~~~g~~~aIiDSGTslt~lp~~~y~~l~~a~~~~~~~~~~~~  302 (413)
T 3vla_A          223 STSATSTQGEPSVEYFIGVKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAARNITR  302 (413)
T ss_dssp             CCSSSCCTTCCCCSCEECCCEEEETTEEECCCGGGTSBCTTSCBCEEECSSSSSEEEEHHHHHHHHHHHHHHHHHTTCCE
T ss_pred             cccccccccCCCceEEEEEEEEEECCEEccCCchhcccccCCCCCEEEECCCCcEEcCHHHHHHHHHHHHHHhcccCCCc
Confidence                        689999999999999998887766533  357899999999999999999999999987642  1111


Q ss_pred             -cccCCCCceeeecCCC----CccCceEEEEecC-CcEEEECCCceEEEeCCceEEEEEEeCCCCCCCCCCeEEEccccc
Q 014294          348 -HTVEEQFSCFQFSKNV----DDAFPTVTFKFKG-SLSLTVYPHEYLFQIREDVWCIGWQNGGLQNHDGRQMILLGGTVY  421 (427)
Q Consensus       348 -~~~~~~~~C~~~~~~~----~~~~P~i~f~f~g-g~~~~l~~~~y~~~~~~~~~Cl~i~~~~~~~~~~~~~~ilG~~fL  421 (427)
                       ........||..++..    ...+|+|+|+|+| +++|+|++++|+++..++..|++|...+..   ..+.||||+.||
T Consensus       303 ~~~~~~~~~C~~~~~~~~~~~~~~lP~i~f~f~g~~~~~~l~~~~y~~~~~~~~~Cl~~~~~~~~---~~~~~IlGd~fl  379 (413)
T 3vla_A          303 VASVAPFGACFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSMVYINDNVVCLGVVDGGSN---LRTSIVIGGHQL  379 (413)
T ss_dssp             ECCCTTCSCEEECTTCCEETTEECCCCEEEECSSTTCEEEECHHHHEEEEETTEEEECEEEEESS---CSSSEEECHHHH
T ss_pred             CCCCCCCcceeccCCccccccccCCCcEEEEEcCCcEEEEeCccceEEEeCCCcEEEEEEecCCC---cccceeEehhhh
Confidence             1122346899876532    1479999999955 489999999999987667899998876531   235799999999


Q ss_pred             ccccC
Q 014294          422 SCFML  426 (427)
Q Consensus       422 r~~yv  426 (427)
                      |++||
T Consensus       380 ~~~~v  384 (413)
T 3vla_A          380 EDNLV  384 (413)
T ss_dssp             TTEEE
T ss_pred             cCeEE
Confidence            99997
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A Back     alignment and structure
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens} Back     alignment and structure
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A Back     alignment and structure
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} Back     alignment and structure
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A* Back     alignment and structure
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A Back     alignment and structure
>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A Back     alignment and structure
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} Back     alignment and structure
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2 Back     alignment and structure
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A Back     alignment and structure
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2 Back     alignment and structure
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2 Back     alignment and structure
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A* Back     alignment and structure
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A* Back     alignment and structure
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ... Back     alignment and structure
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ... Back     alignment and structure
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans} Back     alignment and structure
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A* Back     alignment and structure
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A Back     alignment and structure
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A* Back     alignment and structure
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A* Back     alignment and structure
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A* Back     alignment and structure
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ... Back     alignment and structure
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A* Back     alignment and structure
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens} Back     alignment and structure
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ... Back     alignment and structure
>3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ... Back     alignment and structure
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A* Back     alignment and structure
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2 Back     alignment and structure
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A* Back     alignment and structure
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A Back     alignment and structure
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2 Back     alignment and structure
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Back     alignment and structure
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B* Back     alignment and structure
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A* Back     alignment and structure
>1b5f_B Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Back     alignment and structure
>2hs1_A HIV-1 protease; ultra-high resolution active site surface binding site, HYDR; HET: 017; 0.84A {Human immunodeficiency virus 1} PDB: 3nu4_A* 3tl9_A* 3tkw_A* 3tkg_A* 3ndu_A* 3ndt_A* 3k4v_A* 3a2o_A* 1fgc_C* 2a1e_A* 2aod_A* 2aoi_A* 2aoj_A* 2hb3_A* 2ien_A* 1sdt_A* 2z4o_A* 2zye_A* 2nmw_A* 3b7v_A* ... Back     alignment and structure
>1fmb_A EIAV protease; hydrolase (acid proteinase), RNA-directed DNA polymerase, AS protease, endonuclease, polyprotein; HET: HYB; 1.80A {Equine infectious anemia virus} SCOP: b.50.1.1 PDB: 2fmb_A* Back     alignment and structure
>3ec0_A Protease; HIV-2, inhibitor, hydrolase; HET: GRL; 1.18A {Human immunodeficiency virus type 2} SCOP: b.50.1.1 PDB: 1hii_A* 1hsi_A 1hsh_A* 1idb_A* 1jld_A* 2mip_A 1ida_A* 3ebz_A* 3ecg_A* 3s45_A* 4upj_A* 1ivq_A* 1ivp_A 2hpf_A 3upj_A* 2hpe_A* 5upj_A* 6upj_A* 1sip_A 1tcw_A* ... Back     alignment and structure
>3liy_A Protease; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.86A {Human t-lymphotropic virus 1} PDB: 2b7f_A* 3liq_A* 3lit_A* 3liv_A* 3lix_A* 3lin_A* Back     alignment and structure
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae} Back     alignment and structure
>2hah_A Protease, retropepsin; retroviral, aspartyl, hydrolase-hydrolase complex; HET: 3TL; 1.70A {Feline immunodeficiency virus} PDB: 3ogp_A* 3ogq_A* 2fiv_A* 6fiv_A* 3fiv_A* 5fiv_A* 4fiv_A* 1fiv_A* 1b11_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 427
d1t6ex_381 b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Tr 6e-47
d2qp8a1387 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Hum 8e-30
g1lya.1338 b.50.1.2 (A:,B:) Cathepsin D {Human (Homo sapiens) 6e-28
d2apra_325 b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus 1e-27
g1htr.1372 b.50.1.2 (P:,B:) Pepsin(ogen) {Human (Homo sapiens 3e-27
d1eaga_342 b.50.1.2 (A:) Acid protease {Yeast (Candida albica 4e-27
d1dpja_329 b.50.1.2 (A:) Acid protease {Baker's yeast (Saccha 3e-26
d1qdma2337 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase 8e-26
d3psga_370 b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxI 1e-25
d1oewa_330 b.50.1.2 (A:) Endothiapepsin {Chestnut blight fung 2e-25
d3cmsa_323 b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos 2e-25
d1j71a_334 b.50.1.2 (A:) Acid protease {Yeast (Candida tropic 2e-25
g1b5f.1326 b.50.1.2 (A:,B:) Plant acid proteinase, phytepsin 1e-23
d1smra_335 b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mu 2e-23
d1hrna_337 b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Ho 2e-23
d1izea_323 b.50.1.2 (A:) Acid protease {Fungus (Aspergillus o 3e-23
d1bxoa_323 b.50.1.2 (A:) Acid protease {Fungus (Penicillium j 4e-23
d1miqa_373 b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading e 7e-23
d1am5a_324 b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus mo 7e-22
d2bjua1329 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrad 3e-21
d1mppa_357 b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840] 6e-21
d1wkra_340 b.50.1.2 (A:) Acid protease {Irpex lacteus (Polypo 5e-18
>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} Length = 381 Back     information, alignment and structure

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Xylanase inhibitor TAXI-I
species: Wheat (Triticum aestivum) [TaxId: 4565]

 Score =  163 bits (413), Expect = 6e-47
 Identities = 63/364 (17%), Positives = 111/364 (30%), Gaps = 45/364 (12%)

Query: 78  SATGLYFTKVGLGTPTDEYYVQVDTGSDLLWVNCAGCSRCPTKSDLGIKLTLFDPSKSST 137
            AT LY      G       + +D    L+W  C G           I  +      ++ 
Sbjct: 11  PATSLYTIPFHDGAS-----LVLDVAGPLVWSTCDGGQPPAE-----IPCSSPTCLLANA 60

Query: 138 SGEIACSDNFCRTTYNNRYPSCSPGVRCEYVVTYGDGSSTSGYFVRDIIQLNQASGNLKT 197
                C    C +                Y      G+  +G         N   G+   
Sbjct: 61  YPAPGCPAPSCGS-------DKHDKPCTAYPYNPVSGACAAGSLSHTRFVANTTDGSKPV 113

Query: 198 APLNSSVIFGCGNRQSGDLGSSTDAAVDGILGFGQANSSLLSQLAAAGNVRKEFAHCLD- 256
           + +N  V+  C   +      S      G+ G   +  +L +Q+A+A  V   F  CL  
Sbjct: 114 SKVNVGVLAACAPSKLLA---SLPRGSTGVAGLANSGLALPAQVASAQKVANRFLLCLPT 170

Query: 257 VVKGGGIFAIGDVVSPK----VKTTPMVPNM--PHYNVILEEVEVGGNPLDLPTSLLGTG 310
              G  IF  G V  P+    +  TP+V     P + +    + VG   + +P   L TG
Sbjct: 171 GGPGVAIFGGGPVPWPQFTQSMPYTPLVTKGGSPAHYISARSIVVGDTRVPVPEGALATG 230

Query: 311 DERGTIIDSGTTLAYLPPMLYDLVLSQILDRQPGLKMHTVEEQFS---------CFQFSK 361
              G ++ +      L P +Y  ++            +      +         C+    
Sbjct: 231 ---GVMLSTRLPYVLLRPDVYRPLMDAFTKALAAQHANGAPVARAVEAVAPFGVCYDTKT 287

Query: 362 NVDD----AFPTVTFKFKGSLSLTVYPHEYLFQIREDVWCIGWQN--GGLQNHDGRQMIL 415
             ++    A P V     G    T+     +  +++   C+ +    G          ++
Sbjct: 288 LGNNLGGYAVPNVQLGLDGGSDWTMTGKNSMVDVKQGTACVAFVEMKGVAAGDGRAPAVI 347

Query: 416 LGGT 419
           LGG 
Sbjct: 348 LGGA 351
>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} Length = 387 Back     information, alignment and structure
>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]} Length = 325 Back     information, alignment and structure
>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]} Length = 342 Back     information, alignment and structure
>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]} Length = 329 Back     information, alignment and structure
>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 337 Back     information, alignment and structure
>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} Length = 370 Back     information, alignment and structure
>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]} Length = 323 Back     information, alignment and structure
>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 334 Back     information, alignment and structure
>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]} Length = 335 Back     information, alignment and structure
>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]} Length = 337 Back     information, alignment and structure
>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]} Length = 323 Back     information, alignment and structure
>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Length = 323 Back     information, alignment and structure
>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} Length = 373 Back     information, alignment and structure
>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]} Length = 324 Back     information, alignment and structure
>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]} Length = 329 Back     information, alignment and structure
>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} Length = 357 Back     information, alignment and structure
>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]} Length = 340 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query427
g1htr.1372 Pepsin(ogen) {Human (Homo sapiens), progastricsin 100.0
d3psga_370 Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} 100.0
d2apra_325 Acid protease {Bread mold (Rhizopus chinensis) [Ta 100.0
d1dpja_329 Acid protease {Baker's yeast (Saccharomyces cerevi 100.0
d1j71a_334 Acid protease {Yeast (Candida tropicalis) [TaxId: 100.0
d1oewa_330 Endothiapepsin {Chestnut blight fungus (Endothia p 100.0
d1smra_335 Chymosin (synonym: renin) {Mouse (Mus musculus) [T 100.0
d1miqa_373 Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo 100.0
d1am5a_324 Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 100.0
d1hrna_337 Chymosin (synonym: renin) {Human (Homo sapiens) [T 100.0
d1eaga_342 Acid protease {Yeast (Candida albicans) [TaxId: 54 100.0
d2qp8a1387 beta-secretase (memapsin) {Human (Homo sapiens) [T 100.0
d1mppa_357 Pepsin {Mucor pusillus [TaxId: 4840]} 100.0
g1lya.1338 Cathepsin D {Human (Homo sapiens) [TaxId: 9606]} 100.0
d3cmsa_323 Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId 100.0
d1t6ex_381 Xylanase inhibitor TAXI-I {Wheat (Triticum aestivu 100.0
d1qdma2337 Plant acid proteinase, phytepsin {Barley (Hordeum 100.0
d1izea_323 Acid protease {Fungus (Aspergillus oryzae) [TaxId: 100.0
d2bjua1329 Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo 100.0
d1bxoa_323 Acid protease {Fungus (Penicillium janthinellum), 100.0
g1b5f.1326 Plant acid proteinase, phytepsin {Cynara carduncul 100.0
d1wkra_340 Acid protease {Irpex lacteus (Polyporus tulipifera 100.0
d2nmza199 Human immunodeficiency virus type 1 protease {Huma 84.27
d4fiva_113 Feline immunodeficiency virus (FIV) protease {Feli 84.01
d2fmba_104 EIAV protease {Equine infectious anemia virus [Tax 83.03
d3ecga199 Human immunodeficiency virus type 2 (HIV-2) protea 81.28
>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]} Back     information, alignment and structure
>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]} Back     information, alignment and structure
>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]} Back     information, alignment and structure
>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} Back     information, alignment and structure
>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]} Back     information, alignment and structure
>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]} Back     information, alignment and structure
>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} Back     information, alignment and structure
>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} Back     information, alignment and structure
>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Back     information, alignment and structure
>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]} Back     information, alignment and structure
>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]} Back     information, alignment and structure
>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Back     information, alignment and structure
>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]} Back     information, alignment and structure
>d2nmza1 b.50.1.1 (A:1-99) Human immunodeficiency virus type 1 protease {Human immunodeficiency virus type 1 [TaxId: 11676]} Back     information, alignment and structure
>d4fiva_ b.50.1.1 (A:) Feline immunodeficiency virus (FIV) protease {Feline immunodeficiency virus [TaxId: 11673]} Back     information, alignment and structure
>d2fmba_ b.50.1.1 (A:) EIAV protease {Equine infectious anemia virus [TaxId: 11665]} Back     information, alignment and structure
>d3ecga1 b.50.1.1 (A:1-99) Human immunodeficiency virus type 2 (HIV-2) protease {Human immunodeficiency virus type 2 [TaxId: 11709]} Back     information, alignment and structure