Citrus Sinensis ID: 014312

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------
MDPTSRPAVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADLDFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETFNVPGLYIAVNSVLALAAGYTTSKCEMTGVVVDVGDGATYVVPVAEGYVIGSSIKSIPIAGKDVTLFIQQLMRERGENVPPEDSFEVARKVKEMYCYTCSDIVKEYNKHDKEPSKYLKQWRGIKPKTGAPYSCDIGYERFLGPEVFFNPEIYSSDFTTPLPAVIDKCIQSAPIDTRRALYKNIVLSGGSTMFKDFHRRLQRDLKKIVDARVLASDARLGGEVKAQPVEVNVVSHAIQRYAVWFGGSVLASTPEFFAACHTKAEYEEYGASICRSNPVFKGMY
cccccccEEEEEcccccccccccccccccEEEcccEEEccccccccccccccccccccccccccccccEEcHHHHccccccccEEEccccccccccccHHHHHHHHHHHHHccccccccccEEEEccccccHHHHHHHHHHHHccccccEEEHHHHHHHHHHHccccccccccEEEEEcccccEEEEEccccccccccccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccccccHHHHHHHHccccccccccccccccccccccEEEEccccccccccccccccccccccccHHHHHHHHHHcccHHHHHHHHccEEEEccccccccHHHHHHHHHHHHHccccHHHHccccccccccccEEEEEcccccccEEEEcccccccccccccEEEEHHHHHHccccEEEEcccccccc
cccccccEEEEEcccccEEcccccccccccEcccEcccccccEEEEccccccccccccEEEccccccccccHHHHHccccccEEEEEccEEccEEccHHHHHHHHHHHHHccccccHHHccEEEEEcccccHHHHHHHHHHHHHcccccEEEEEEHHHHHHHHccccccEEEcEEEEEEccccEEEEEEEccEEcHHHcEEEcccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHcccHHHHHHHcccccccccccEEEEcccccccHHHHccHHHcccccccccHHHHHHHHHHcccccHHHHHcccEEEcHHHccccHHHHHHHHHHHHHHHHccccccccccEEEcccEEEEEEccccccEEEEEcHHHHHHHHHHHHHHHcHHHHHcccccEEEEEEEEcccc
mdptsrpavvidngtgytkmgfagnvepcfiLPTVVAVNESFlnqsrsssKANWLAQYNAgvmadldffigdeavtksrssstynlsypirhgqvdnWDAMERYWQQCIFnylrcdpedhyflltespltapesreytgeIMFETFNVPGLYIAVNSVLALAAGyttskcemtgvvvdvgdgatyvVPVAEgyvigssiksipiagkDVTLFIQQLMRergenvppedsfEVARKVKEMYCYTCSDIVKeynkhdkepskYLKQwrgikpktgapyscdigyerflgpevffnpeiyssdfttplpAVIDKCiqsapidtRRALYKNIVLSGGSTMFKDFHRRLQRDLKKIVDARVLASdarlggevkaqpveVNVVSHAIQRYAVWFggsvlastPEFFAACHTKAEYEEYGasicrsnpvfkgmy
mdptsrpavvidngtgYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADLDFFIGDEAVTKsrssstynlsypirhGQVDNWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETFNVPGLYIAVNSVLALAAGYTTSKCEMTGVVVDVGDGATYVVPVAEGYVIGssiksipiagKDVTLFIQQLMrergenvppedsFEVARKVKEMYCYTCSDIvkeynkhdkepskylkqwrgikpktgaPYSCDIGYERFLGPEVFFNPEIYSSDFTTPLPAVIDKCIQSAPIDTRRALYKNIVLSGGSTMFKDFHRRLQRDLKKIVDARVLASdarlggevkaqpvEVNVVSHAIQRYAVWFGGSVLASTPEFFAACHTKAEYEeygasicrsnpvfkgmy
MDPTSRPAVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADLDFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETFNVPGLYIAVNSVLALAAGYTTSKCEMtgvvvdvgdgatyvvPVAEGYVIGSSIKSIPIAGKDVTLFIQQLMRERGENVPPEDSFEVARKVKEMYCYTCSDIVKEYNKHDKEPSKYLKQWRGIKPKTGAPYSCDIGYERFLGPEVFFNPEIYSSDFTTPLPAVIDKCIQSAPIDTRRALYKNIVLSGGSTMFKDFHRRLQRDLKKIVDARVLASDARLGGEVKAQPVEVNVVSHAIQRYAVWFGGSVLASTPEFFAACHTKAEYEEYGASICRSNPVFKGMY
********VVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQ*****KANWLAQYNAGVMADLDFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETFNVPGLYIAVNSVLALAAGYTTSKCEMTGVVVDVGDGATYVVPVAEGYVIGSSIKSIPIAGKDVTLFIQQLMR***********FEVARKVKEMYCYTCSDIVKEYNKHDKEPSKYLKQWRGIKPKTGAPYSCDIGYERFLGPEVFFNPEIYSSDFTTPLPAVIDKCIQSAPIDTRRALYKNIVLSGGSTMFKDFHRRLQRDLKKIVDARVLASDARLGGEVKAQPVEVNVVSHAIQRYAVWFGGSVLASTPEFFAACHTKAEYEEYGASICRS********
****SRPAVVIDNGTGYTKMGFAGNVEPCFILPTVVAV*********************AGVMADLDFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETFNVPGLYIAVNSVLALAAGYTTSKCEMTGVVVDVGDGATYVVPVAEGYVIGSSIKSIPIAGKDVTLFIQQLMRERGENVPPEDSFEVARKVKEMYCYTCSDIVK*****************GIKPKTGAPYSCDIGYERFLGPEVFFNPEIYSSDFTTPLPAVIDKCIQSAPIDTRRALYKNIVLSGGSTMFKDFHRRLQRDLKKIVDARVLASDAR*G*EVKAQPVEVNVVSHAIQRYAVWFGGSVLASTPEFFAACHTKAEYEEYGASICRSNPVFK*MY
MDPTSRPAVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADLDFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETFNVPGLYIAVNSVLALAAGYTTSKCEMTGVVVDVGDGATYVVPVAEGYVIGSSIKSIPIAGKDVTLFIQQLMRER********SFEVARKVKEMYCYTCSDIVKEYNKHDKEPSKYLKQWRGIKPKTGAPYSCDIGYERFLGPEVFFNPEIYSSDFTTPLPAVIDKCIQSAPIDTRRALYKNIVLSGGSTMFKDFHRRLQRDLKKIVDARVLASDARLGGEVKAQPVEVNVVSHAIQRYAVWFGGSVLASTPEFFAACHTKAEYEEYGASICRSNPVFKGMY
*****RPAVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADLDFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETFNVPGLYIAVNSVLALAAGYTTSKCEMTGVVVDVGDGATYVVPVAEGYVIGSSIKSIPIAGKDVTLFIQQLMRERGENVPPEDSFEVARKVKEMYCYTCSDIVKEYNKHDKEPSKYLKQWRGIKPKTGAPYSCDIGYERFLGPEVFFNPEIYSSDFTTPLPAVIDKCIQSAPIDTRRALYKNIVLSGGSTMFKDFHRRLQRDLKKIVDARVLASD*RLGGEVKAQPVEVNVVSHAIQRYAVWFGGSVLASTPEFFAACHTKAEYEEYGASICRSNPVFKGM*
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MDPTSRPAVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADLDFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETFNVPGLYIAVNSVLALAAGYTTSKCEMTGVVVDVGDGATYVVPVAEGYVIGSSIKSIPIAGKDVTLFIQQLMRERGENVPPEDSFEVARKVKEMYCYTCSDIVKEYNKHDKEPSKYLKQWRGIKPKTGAPYSCDIGYERFLGPEVFFNPEIYSSDFTTPLPAVIDKCIQSAPIDTRRALYKNIVLSGGSTMFKDFHRRLQRDLKKIVDARVLASDARLGGEVKAQPVEVNVVSHAIQRYAVWFGGSVLASTPEFFAACHTKAEYEEYGASICRSNPVFKGMY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query427 2.2.26 [Sep-21-2011]
Q9SAF1427 Actin-related protein 3 O yes no 1.0 1.0 0.894 0.0
Q6K908428 Actin-related protein 3 O yes no 1.0 0.997 0.836 0.0
A2X6S3428 Actin-related protein 3 O N/A no 1.0 0.997 0.836 0.0
P53490427 Actin-related protein 3 O N/A no 0.988 0.988 0.603 1e-153
P42528418 Actin-related protein 3 O yes no 0.969 0.990 0.610 1e-153
Q61WW9426 Actin-related protein 3 O N/A no 0.988 0.990 0.578 1e-150
Q9N4I0425 Actin-related protein 3 O yes no 0.985 0.990 0.571 1e-148
P32392418 Actin-related protein 3 O yes no 0.950 0.971 0.584 1e-144
Q5R8R1418 Actin-related protein 3 O yes no 0.957 0.978 0.598 1e-143
P61158418 Actin-related protein 3 O yes no 0.957 0.978 0.598 1e-143
>sp|Q9SAF1|ARP3_ARATH Actin-related protein 3 OS=Arabidopsis thaliana GN=ARP3 PE=1 SV=1 Back     alignment and function desciption
 Score =  820 bits (2117), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/427 (89%), Positives = 411/427 (96%)

Query: 1   MDPTSRPAVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNA 60
           MDPTSRPA+VIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQS+SSSKA W  Q+NA
Sbjct: 1   MDPTSRPAIVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSKSSSKATWQTQHNA 60

Query: 61  GVMADLDFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPEDH 120
           GV ADLDF+IGDEA+ KSRSSST+NL YPI HGQV++WDAMERYWQQCIFNYLRCDPEDH
Sbjct: 61  GVAADLDFYIGDEALAKSRSSSTHNLHYPIEHGQVEDWDAMERYWQQCIFNYLRCDPEDH 120

Query: 121 YFLLTESPLTAPESREYTGEIMFETFNVPGLYIAVNSVLALAAGYTTSKCEMTGVVVDVG 180
           YFLLTESPLT PESREYTGEI+FETFNVPGLYIAVNSVLALAAGYTTSKCEMTGVVVDVG
Sbjct: 121 YFLLTESPLTPPESREYTGEILFETFNVPGLYIAVNSVLALAAGYTTSKCEMTGVVVDVG 180

Query: 181 DGATYVVPVAEGYVIGSSIKSIPIAGKDVTLFIQQLMRERGENVPPEDSFEVARKVKEMY 240
           DGAT+VVPVAEGYVIGS IKSIPIAGKDVTLFIQQLMRERGEN+PPEDSF+VARKVKEMY
Sbjct: 181 DGATHVVPVAEGYVIGSCIKSIPIAGKDVTLFIQQLMRERGENIPPEDSFDVARKVKEMY 240

Query: 241 CYTCSDIVKEYNKHDKEPSKYLKQWRGIKPKTGAPYSCDIGYERFLGPEVFFNPEIYSSD 300
           CYTCSDIVKE+NKHDKEP+KY+KQW+G+KPKTGAPY+CD+GYERFLGPEVFFNPEIYS+D
Sbjct: 241 CYTCSDIVKEFNKHDKEPAKYIKQWKGVKPKTGAPYTCDVGYERFLGPEVFFNPEIYSND 300

Query: 301 FTTPLPAVIDKCIQSAPIDTRRALYKNIVLSGGSTMFKDFHRRLQRDLKKIVDARVLASD 360
           FTT LPAVIDKCIQSAPIDTRRALYKNIVLSGGSTMFKDF RRLQRDLKKIVDARVLA++
Sbjct: 301 FTTTLPAVIDKCIQSAPIDTRRALYKNIVLSGGSTMFKDFGRRLQRDLKKIVDARVLANN 360

Query: 361 ARLGGEVKAQPVEVNVVSHAIQRYAVWFGGSVLASTPEFFAACHTKAEYEEYGASICRSN 420
           AR GGE+ +QPVEVNVVSH +QR+AVWFGGSVL+STPEFFA+C TK EYEEYGASICR+N
Sbjct: 361 ARTGGEITSQPVEVNVVSHPVQRFAVWFGGSVLSSTPEFFASCRTKEEYEEYGASICRTN 420

Query: 421 PVFKGMY 427
           PVFKGMY
Sbjct: 421 PVFKGMY 427
Functions as ATP-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the pointed end of the daughter actin filament (By similarity). Involved in the control of cell morphogenesis in leaf epidermal pavement cells, root hairs, hypocotyls epidermal cells and trichomes, especially during rapid cell expansion. Regulates the directionality of cell expansion by regulating the actin organization, and thus the microtubules distribution and the fusion of small vacuoles.
Arabidopsis thaliana (taxid: 3702)
>sp|Q6K908|ARP3_ORYSJ Actin-related protein 3 OS=Oryza sativa subsp. japonica GN=ARP3 PE=2 SV=1 Back     alignment and function description
>sp|A2X6S3|ARP3_ORYSI Actin-related protein 3 OS=Oryza sativa subsp. indica GN=ARP3 PE=2 SV=2 Back     alignment and function description
>sp|P53490|ARP3_ACACA Actin-related protein 3 OS=Acanthamoeba castellanii GN=ARP3 PE=2 SV=1 Back     alignment and function description
>sp|P42528|ARP3_DICDI Actin-related protein 3 OS=Dictyostelium discoideum GN=arpC PE=1 SV=1 Back     alignment and function description
>sp|Q61WW9|ARP3_CAEBR Actin-related protein 3 OS=Caenorhabditis briggsae GN=arx-1 PE=3 SV=1 Back     alignment and function description
>sp|Q9N4I0|ARP3_CAEEL Actin-related protein 3 OS=Caenorhabditis elegans GN=arx-1 PE=3 SV=1 Back     alignment and function description
>sp|P32392|ARP3_DROME Actin-related protein 3 OS=Drosophila melanogaster GN=Arp66B PE=2 SV=3 Back     alignment and function description
>sp|Q5R8R1|ARP3_PONAB Actin-related protein 3 OS=Pongo abelii GN=ACTR3 PE=2 SV=3 Back     alignment and function description
>sp|P61158|ARP3_HUMAN Actin-related protein 3 OS=Homo sapiens GN=ACTR3 PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query427
255547968427 protein binding protein, putative [Ricin 1.0 1.0 0.932 0.0
449435007428 PREDICTED: actin-related protein 3-like 1.0 0.997 0.929 0.0
224110830428 predicted protein [Populus trichocarpa] 1.0 0.997 0.936 0.0
356525409428 PREDICTED: actin-related protein 3-like 1.0 0.997 0.915 0.0
224102373428 predicted protein [Populus trichocarpa] 1.0 0.997 0.927 0.0
225424568428 PREDICTED: actin-related protein 3 [Viti 0.990 0.988 0.924 0.0
356512648428 PREDICTED: actin-related protein 3-like 1.0 0.997 0.901 0.0
356525415428 PREDICTED: actin-related protein 3-like 1.0 0.997 0.894 0.0
15222206427 actin-related protein 3 [Arabidopsis tha 1.0 1.0 0.894 0.0
297844220427 hypothetical protein ARALYDRAFT_471471 [ 1.0 1.0 0.892 0.0
>gi|255547968|ref|XP_002515041.1| protein binding protein, putative [Ricinus communis] gi|223546092|gb|EEF47595.1| protein binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  848 bits (2192), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/427 (93%), Positives = 421/427 (98%)

Query: 1   MDPTSRPAVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNA 60
           MDPT+RPAVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSR++SKANWL+Q+NA
Sbjct: 1   MDPTNRPAVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRTTSKANWLSQHNA 60

Query: 61  GVMADLDFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPEDH 120
           GVMADLDFFIG+EA+TKSRSS+TYNLSYPI+HGQVDNWDAMERYWQQCIFNYLRCDPEDH
Sbjct: 61  GVMADLDFFIGEEAITKSRSSNTYNLSYPIKHGQVDNWDAMERYWQQCIFNYLRCDPEDH 120

Query: 121 YFLLTESPLTAPESREYTGEIMFETFNVPGLYIAVNSVLALAAGYTTSKCEMTGVVVDVG 180
           YFLLTESPLTAPE+REYTGEIMFETFNVPGLYIAVNSVLALAAGYTTSKCEMTGVVVDVG
Sbjct: 121 YFLLTESPLTAPETREYTGEIMFETFNVPGLYIAVNSVLALAAGYTTSKCEMTGVVVDVG 180

Query: 181 DGATYVVPVAEGYVIGSSIKSIPIAGKDVTLFIQQLMRERGENVPPEDSFEVARKVKEMY 240
           DGAT+VVPVA+GYVIGSSIKSIPIAGKDVTLFIQQLMRERGEN+P EDSF+VARKVKEM+
Sbjct: 181 DGATHVVPVADGYVIGSSIKSIPIAGKDVTLFIQQLMRERGENIPLEDSFDVARKVKEMH 240

Query: 241 CYTCSDIVKEYNKHDKEPSKYLKQWRGIKPKTGAPYSCDIGYERFLGPEVFFNPEIYSSD 300
           CYTCSDIVKE+NKHDKEP KY+K WRGIKPKTGAPYSCDIGYERFLGPEVFFNPEIYSSD
Sbjct: 241 CYTCSDIVKEFNKHDKEPGKYIKHWRGIKPKTGAPYSCDIGYERFLGPEVFFNPEIYSSD 300

Query: 301 FTTPLPAVIDKCIQSAPIDTRRALYKNIVLSGGSTMFKDFHRRLQRDLKKIVDARVLASD 360
           FTTPLPA+IDKCIQSAPIDTRRALYKNIVLSGGSTMFKDF RRLQRDLKKIVDARVLAS+
Sbjct: 301 FTTPLPALIDKCIQSAPIDTRRALYKNIVLSGGSTMFKDFGRRLQRDLKKIVDARVLASE 360

Query: 361 ARLGGEVKAQPVEVNVVSHAIQRYAVWFGGSVLASTPEFFAACHTKAEYEEYGASICRSN 420
           ARL GE+K+QPVEVNVVSH IQR+AVWFGGSVLASTPEFFAACHTKAEYEEYGASICR+N
Sbjct: 361 ARLNGEIKSQPVEVNVVSHPIQRFAVWFGGSVLASTPEFFAACHTKAEYEEYGASICRTN 420

Query: 421 PVFKGMY 427
           PVFKGMY
Sbjct: 421 PVFKGMY 427

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449435007|ref|XP_004135287.1| PREDICTED: actin-related protein 3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224110830|ref|XP_002315648.1| predicted protein [Populus trichocarpa] gi|222864688|gb|EEF01819.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356525409|ref|XP_003531317.1| PREDICTED: actin-related protein 3-like [Glycine max] Back     alignment and taxonomy information
>gi|224102373|ref|XP_002312654.1| predicted protein [Populus trichocarpa] gi|222852474|gb|EEE90021.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225424568|ref|XP_002285370.1| PREDICTED: actin-related protein 3 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356512648|ref|XP_003525030.1| PREDICTED: actin-related protein 3-like [Glycine max] Back     alignment and taxonomy information
>gi|356525415|ref|XP_003531320.1| PREDICTED: actin-related protein 3-like [Glycine max] Back     alignment and taxonomy information
>gi|15222206|ref|NP_172777.1| actin-related protein 3 [Arabidopsis thaliana] gi|75313139|sp|Q9SAF1.1|ARP3_ARATH RecName: Full=Actin-related protein 3; AltName: Full=Protein DISTORTED TRICHOMES 1 gi|4850401|gb|AAD31071.1|AC007357_20 Strong similarity to gb|U29610 Actin-like protein (Arp3) from Acanthamoeba castellanii and is a member of the PF|00022 Actin family [Arabidopsis thaliana] gi|21427461|gb|AAM53243.1|AF507911_1 actin-related protein 3 [Arabidopsis thaliana] gi|20260500|gb|AAM13148.1| similar to actin-like protein [Arabidopsis thaliana] gi|21489929|tpg|DAA00033.1| TPA_exp: actin-related protein 3; AtARP3 [Arabidopsis thaliana] gi|30387525|gb|AAP31928.1| At1g13180 [Arabidopsis thaliana] gi|332190859|gb|AEE28980.1| actin-related protein 3 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297844220|ref|XP_002889991.1| hypothetical protein ARALYDRAFT_471471 [Arabidopsis lyrata subsp. lyrata] gi|297335833|gb|EFH66250.1| hypothetical protein ARALYDRAFT_471471 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query427
TAIR|locus:2031815427 DIS1 "DISTORTED TRICHOMES 1" [ 1.0 1.0 0.861 2.9e-206
DICTYBASE|DDB_G0283755418 arpC "actin related protein 3" 0.969 0.990 0.594 1.1e-137
WB|WBGene00000199425 arx-1 [Caenorhabditis elegans 0.964 0.969 0.561 3.2e-129
FB|FBgn0262716418 Arp3 "Actin-related protein 3" 0.957 0.978 0.567 1.1e-128
UNIPROTKB|P61157418 ACTR3 "Actin-related protein 3 0.950 0.971 0.578 1.4e-128
UNIPROTKB|P61158418 ACTR3 "Actin-related protein 3 0.950 0.971 0.578 1.4e-128
UNIPROTKB|F2Z5D2418 ACTR3 "Uncharacterized protein 0.950 0.971 0.578 1.4e-128
MGI|MGI:1921367418 Actr3 "ARP3 actin-related prot 0.950 0.971 0.576 1.7e-128
RGD|71024418 Actr3 "ARP3 actin-related prot 0.950 0.971 0.576 1.7e-128
UNIPROTKB|F1NW48419 ACTR3B "Uncharacterized protei 0.950 0.968 0.573 3.6e-128
TAIR|locus:2031815 DIS1 "DISTORTED TRICHOMES 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1995 (707.3 bits), Expect = 2.9e-206, P = 2.9e-206
 Identities = 368/427 (86%), Positives = 396/427 (92%)

Query:     1 MDPTSRPAVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNA 60
             MDPTSRPA+VIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQS+SSSKA W  Q+NA
Sbjct:     1 MDPTSRPAIVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSKSSSKATWQTQHNA 60

Query:    61 GVMADLDFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPEDH 120
             GV ADLDF+IGDEA+ KSRSSST+NL YPI HGQV++WDAMERYWQQCIFNYLRCDPEDH
Sbjct:    61 GVAADLDFYIGDEALAKSRSSSTHNLHYPIEHGQVEDWDAMERYWQQCIFNYLRCDPEDH 120

Query:   121 YFLLTESPLTAPESREYTGEIMFETFNVPGLYIAVNSVLALAAGYTTSKCEMXXXXXXXX 180
             YFLLTESPLT PESREYTGEI+FETFNVPGLYIAVNSVLALAAGYTTSKCEM        
Sbjct:   121 YFLLTESPLTPPESREYTGEILFETFNVPGLYIAVNSVLALAAGYTTSKCEMTGVVVDVG 180

Query:   181 XXXXXXXPVAEGYVIGSSIKSIPIAGKDVTLFIQQLMRERGENVPPEDSFEVARKVKEMY 240
                    PVAEGYVIGS IKSIPIAGKDVTLFIQQLMRERGEN+PPEDSF+VARKVKEMY
Sbjct:   181 DGATHVVPVAEGYVIGSCIKSIPIAGKDVTLFIQQLMRERGENIPPEDSFDVARKVKEMY 240

Query:   241 CYTCSDIVKEYNKHDKEPSKYLKQWRGIKPKTGAPYSCDIGYERFLGPEVFFNPEIYSSD 300
             CYTCSDIVKE+NKHDKEP+KY+KQW+G+KPKTGAPY+CD+GYERFLGPEVFFNPEIYS+D
Sbjct:   241 CYTCSDIVKEFNKHDKEPAKYIKQWKGVKPKTGAPYTCDVGYERFLGPEVFFNPEIYSND 300

Query:   301 FTTPLPAVIDKCIQSAPIDTRRALYKNIVLSGGSTMFKDFHRRLQRDLKKIVDARVLASD 360
             FTT LPAVIDKCIQSAPIDTRRALYKNIVLSGGSTMFKDF RRLQRDLKKIVDARVLA++
Sbjct:   301 FTTTLPAVIDKCIQSAPIDTRRALYKNIVLSGGSTMFKDFGRRLQRDLKKIVDARVLANN 360

Query:   361 ARLGGEVKAQPVEVNVVSHAIQRYAVWFGGSVLASTPEFFAACHTKAEYEEYGASICRSN 420
             AR GGE+ +QPVEVNVVSH +QR+AVWFGGSVL+STPEFFA+C TK EYEEYGASICR+N
Sbjct:   361 ARTGGEITSQPVEVNVVSHPVQRFAVWFGGSVLSSTPEFFASCRTKEEYEEYGASICRTN 420

Query:   421 PVFKGMY 427
             PVFKGMY
Sbjct:   421 PVFKGMY 427
GO:0003779 "actin binding" evidence=IEA
GO:0005200 "structural constituent of cytoskeleton" evidence=ISS
GO:0005524 "ATP binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0005856 "cytoskeleton" evidence=IEA
GO:0030833 "regulation of actin filament polymerization" evidence=IEA
GO:0007015 "actin filament organization" evidence=RCA;IMP
GO:0000902 "cell morphogenesis" evidence=IMP
GO:0005885 "Arp2/3 protein complex" evidence=TAS
GO:0009825 "multidimensional cell growth" evidence=IMP
GO:0010090 "trichome morphogenesis" evidence=RCA;IMP
GO:0005829 "cytosol" evidence=IDA
GO:0045010 "actin nucleation" evidence=RCA
DICTYBASE|DDB_G0283755 arpC "actin related protein 3" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
WB|WBGene00000199 arx-1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
FB|FBgn0262716 Arp3 "Actin-related protein 3" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|P61157 ACTR3 "Actin-related protein 3" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|P61158 ACTR3 "Actin-related protein 3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F2Z5D2 ACTR3 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1921367 Actr3 "ARP3 actin-related protein 3" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|71024 Actr3 "ARP3 actin-related protein 3 homolog (yeast)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1NW48 ACTR3B "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8I4X0ACT1_PLAF7No assigned EC number0.33890.84300.9574yesno
P32392ARP3_DROMENo assigned EC number0.58450.95080.9712yesno
P32390ARP3_SCHPONo assigned EC number0.56940.95080.9508yesno
Q61WW9ARP3_CAEBRNo assigned EC number0.57800.98820.9906N/Ano
Q99JY9ARP3_MOUSENo assigned EC number0.59570.95780.9784yesno
Q8SWN8ACT_ENCCUNo assigned EC number0.34930.84540.9626yesno
Q5R8R1ARP3_PONABNo assigned EC number0.59810.95780.9784yesno
P42528ARP3_DICDINo assigned EC number0.61070.96950.9904yesno
P61157ARP3_BOVINNo assigned EC number0.59810.95780.9784yesno
Q6K908ARP3_ORYSJNo assigned EC number0.83641.00.9976yesno
P61158ARP3_HUMANNo assigned EC number0.59810.95780.9784yesno
O73723ARP3_TAKRUNo assigned EC number0.59570.95780.9784N/Ano
P78712ARP3_NEUCRNo assigned EC number0.55830.96480.9384N/Ano
Q4V7C7ARP3_RATNo assigned EC number0.59570.95780.9784yesno
P53490ARP3_ACACANo assigned EC number0.60370.98820.9882N/Ano
P47117ARP3_YEASTNo assigned EC number0.55280.97650.9287yesno
Q9SAF1ARP3_ARATHNo assigned EC number0.89461.01.0yesno
A2X6S3ARP3_ORYSINo assigned EC number0.83641.00.9976N/Ano
Q9N4I0ARP3_CAEELNo assigned EC number0.57100.98590.9905yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query427
PTZ00280414 PTZ00280, PTZ00280, Actin-related protein 3; Provi 0.0
smart00268373 smart00268, ACTIN, Actin 1e-134
COG5277444 COG5277, COG5277, Actin and related proteins [Cyto 2e-99
pfam00022367 pfam00022, Actin, Actin 3e-98
PTZ00004378 PTZ00004, PTZ00004, actin-2; Provisional 5e-88
PTZ00281376 PTZ00281, PTZ00281, actin; Provisional 2e-74
PTZ00466380 PTZ00466, PTZ00466, actin-like protein; Provisiona 1e-73
PTZ00452375 PTZ00452, PTZ00452, actin; Provisional 2e-54
cd00012185 cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide- 1e-13
>gnl|CDD|240343 PTZ00280, PTZ00280, Actin-related protein 3; Provisional Back     alignment and domain information 
 Score =  659 bits (1701), Expect = 0.0
 Identities = 250/425 (58%), Positives = 320/425 (75%), Gaps = 20/425 (4%)

Query: 7   PAVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADL 66
           P VVIDNGTGYTKMG+AGN EP +I+PT++A N     QSR  SK             DL
Sbjct: 5   PVVVIDNGTGYTKMGYAGNTEPTYIIPTLIADNSK---QSRRRSKK---------GFEDL 52

Query: 67  DFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPEDHYFLLTE 126
           DF+IGDEA+  S    +Y L+YP++HG V++WD ME++W+QCIF YLRC+PE+HYF+LTE
Sbjct: 53  DFYIGDEALAAS---KSYTLTYPMKHGIVEDWDLMEKFWEQCIFKYLRCEPEEHYFILTE 109

Query: 127 SPLTAPESREYTGEIMFETFNVPGLYIAVNSVLALAAGYTTSKCE-----MTGVVVDVGD 181
            P+  PE+REYT EIMFETFNV GLYIAV +VLAL A +T+ K +     +TG V+D GD
Sbjct: 110 PPMNPPENREYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAKELGGTLTGTVIDSGD 169

Query: 182 GATYVVPVAEGYVIGSSIKSIPIAGKDVTLFIQQLMRERGENVPPEDSFEVARKVKEMYC 241
           G T+V+PV +GYVIGSSIK IP+AG+D+T FIQQ++RERGE +P ED   +A+++KE YC
Sbjct: 170 GVTHVIPVVDGYVIGSSIKHIPLAGRDITNFIQQMLRERGEPIPAEDILLLAQRIKEKYC 229

Query: 242 YTCSDIVKEYNKHDKEPSKYLKQWRGIKPKTGAPYSCDIGYERFLGPEVFFNPEIYSSDF 301
           Y   DI KE+ K+D +P  + K++  +   T  PY+ D+GYERFLGPE+FF+PEI+SS++
Sbjct: 230 YVAPDIAKEFEKYDSDPKNHFKKYTAVNSVTKKPYTVDVGYERFLGPEMFFHPEIFSSEW 289

Query: 302 TTPLPAVIDKCIQSAPIDTRRALYKNIVLSGGSTMFKDFHRRLQRDLKKIVDARVLASDA 361
           TTPLP V+D  IQS PID RR LYKNIVLSGGSTMFK F +RLQRD++K VD R+  ++ 
Sbjct: 290 TTPLPEVVDDAIQSCPIDCRRPLYKNIVLSGGSTMFKGFDKRLQRDVRKRVDRRLKKAEE 349

Query: 362 RLGGEVKAQPVEVNVVSHAIQRYAVWFGGSVLASTPEFFAACHTKAEYEEYGASICRSNP 421
             GG++K  P++VNVVSH  QRYAVW+GGS+LAS+PEF   CHTKAEY+EYG SICR N 
Sbjct: 350 LSGGKLKPIPIDVNVVSHPRQRYAVWYGGSMLASSPEFEKVCHTKAEYDEYGPSICRYNN 409

Query: 422 VFKGM 426
           VF  +
Sbjct: 410 VFHSV 414

Length = 414
>gnl|CDD|214592 smart00268, ACTIN, Actin Back     alignment and domain information
>gnl|CDD|227602 COG5277, COG5277, Actin and related proteins [Cytoskeleton] Back     alignment and domain information
>gnl|CDD|200935 pfam00022, Actin, Actin Back     alignment and domain information
>gnl|CDD|240225 PTZ00004, PTZ00004, actin-2; Provisional Back     alignment and domain information
>gnl|CDD|173506 PTZ00281, PTZ00281, actin; Provisional Back     alignment and domain information
>gnl|CDD|240426 PTZ00466, PTZ00466, actin-like protein; Provisional Back     alignment and domain information
>gnl|CDD|185631 PTZ00452, PTZ00452, actin; Provisional Back     alignment and domain information
>gnl|CDD|212657 cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 427
KOG0676372 consensus Actin and related proteins [Cytoskeleton 100.0
PTZ00452375 actin; Provisional 100.0
PTZ00466380 actin-like protein; Provisional 100.0
PTZ00280414 Actin-related protein 3; Provisional 100.0
PTZ00281376 actin; Provisional 100.0
PTZ00004378 actin-2; Provisional 100.0
KOG0679426 consensus Actin-related protein - Arp4p/Act3p [Cyt 100.0
KOG0677389 consensus Actin-related protein Arp2/3 complex, su 100.0
PF00022393 Actin: Actin; InterPro: IPR004000 Actin [, ] is a 100.0
smart00268373 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarki 100.0
cd00012371 ACTIN Actin; An ubiquitous protein involved in the 100.0
KOG0678415 consensus Actin-related protein Arp2/3 complex, su 100.0
KOG0680400 consensus Actin-related protein - Arp6p [Cytoskele 100.0
COG5277444 Actin and related proteins [Cytoskeleton] 100.0
KOG0681645 consensus Actin-related protein - Arp5p [Cytoskele 100.0
KOG0797618 consensus Actin-related protein [Cytoskeleton] 100.0
PRK13930335 rod shape-determining protein MreB; Provisional 100.0
PRK13927334 rod shape-determining protein MreB; Provisional 100.0
TIGR00904333 mreB cell shape determining protein, MreB/Mrl fami 100.0
PRK13929335 rod-share determining protein MreBH; Provisional 100.0
PF06723326 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Ba 99.97
PRK13928336 rod shape-determining protein Mbl; Provisional 99.97
COG1077342 MreB Actin-like ATPase involved in cell morphogene 99.89
TIGR02529239 EutJ ethanolamine utilization protein EutJ family 99.69
PRK15080267 ethanolamine utilization protein EutJ; Provisional 99.64
CHL00094 621 dnaK heat shock protein 70 99.51
TIGR02350 595 prok_dnaK chaperone protein DnaK. Members of this 99.42
PTZ00186 657 heat shock 70 kDa precursor protein; Provisional 99.42
PTZ00400 663 DnaK-type molecular chaperone; Provisional 99.42
TIGR01991 599 HscA Fe-S protein assembly chaperone HscA. The Hea 99.41
PLN03184 673 chloroplast Hsp70; Provisional 99.39
PRK00290 627 dnaK molecular chaperone DnaK; Provisional 99.37
PRK13411 653 molecular chaperone DnaK; Provisional 99.37
PRK13410 668 molecular chaperone DnaK; Provisional 99.35
PRK01433 595 hscA chaperone protein HscA; Provisional 99.35
PTZ00009 653 heat shock 70 kDa protein; Provisional 99.32
PRK05183 616 hscA chaperone protein HscA; Provisional 99.29
TIGR01174371 ftsA cell division protein FtsA. This bacterial ce 99.28
PRK09472420 ftsA cell division protein FtsA; Reviewed 99.21
PF00012 602 HSP70: Hsp70 protein; InterPro: IPR013126 Heat sho 99.08
PRK11678450 putative chaperone; Provisional 99.02
COG0849418 ftsA Cell division ATPase FtsA [Cell division and 98.96
TIGR01175348 pilM type IV pilus assembly protein PilM. This pro 98.71
PRK13917344 plasmid segregation protein ParM; Provisional 98.65
TIGR03739320 PRTRC_D PRTRC system protein D. A novel genetic sy 98.65
COG0443 579 DnaK Molecular chaperone [Posttranslational modifi 98.59
PF11104340 PilM_2: Type IV pilus assembly protein PilM;; PDB: 98.52
PF06406318 StbA: StbA protein; InterPro: IPR009440 This entry 97.66
COG4820277 EutJ Ethanolamine utilization protein, possible ch 97.6
KOG0104 902 consensus Molecular chaperones GRP170/SIL1, HSP70 97.52
KOG0101 620 consensus Molecular chaperones HSP70/HSC70, HSP70 97.4
KOG0100 663 consensus Molecular chaperones GRP78/BiP/KAR2, HSP 97.31
PRK10719475 eutA reactivating factor for ethanolamine ammonia 97.11
TIGR00241248 CoA_E_activ CoA-substrate-specific enzyme activase 96.94
COG4972354 PilM Tfp pilus assembly protein, ATPase PilM [Cell 96.9
TIGR03286404 methan_mark_15 putative methanogenesis marker prot 96.09
KOG0103 727 consensus Molecular chaperones HSP105/HSP110/SSE1, 95.93
PF06277473 EutA: Ethanolamine utilisation protein EutA; Inter 94.91
PRK11031 496 guanosine pentaphosphate phosphohydrolase; Provisi 94.27
KOG0102 640 consensus Molecular chaperones mortalin/PBP74/GRP7 93.34
TIGR03706300 exo_poly_only exopolyphosphatase. It appears that 93.18
PRK10854 513 exopolyphosphatase; Provisional 92.66
COG0248 492 GppA Exopolyphosphatase [Nucleotide transport and 89.88
PF14450120 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B 89.77
TIGR02261262 benz_CoA_red_D benzoyl-CoA reductase, bcr type, su 86.74
TIGR03123318 one_C_unchar_1 probable H4MPT-linked C1 transfer p 85.97
PF01869271 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; In 84.83
COG1521251 Pantothenate kinase type III (Bvg accessory factor 82.26
PRK13324258 pantothenate kinase; Reviewed 81.29
PF01968290 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPr 80.91
>KOG0676 consensus Actin and related proteins [Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=8.5e-90  Score=652.63  Aligned_cols=368  Identities=39%  Similarity=0.681  Sum_probs=338.4

Q ss_pred             CCCCcEEEeCCCccEEEEEcCCCCCceeeeeeEEeeccccccccccchhhhhhhhccCCCCCCCeEEccccccccCCCCC
Q 014312            4 TSRPAVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNAGVMADLDFFIGDEAVTKSRSSST   83 (427)
Q Consensus         4 ~~~~~vVlD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~   83 (427)
                      +...+||+|+||..+|+||||++.|+.++||.++++++.               ....+...++.++|+++...+     
T Consensus         5 ~~~~~vViDnGsg~~KaGfag~~~P~~v~ps~vg~~~~~---------------~~~~~~~~~~~~vg~~a~~~~-----   64 (372)
T KOG0676|consen    5 DDIQAVVIDNGSGFVKAGFAGDDAPRAVFPSIVGRPRHQ---------------GVMAGMTQKDTYVGDEAESKR-----   64 (372)
T ss_pred             CCcceEEEECCCceeecccCCCCCCceecceeccccccc---------------cccccccccccccchhhhccc-----
Confidence            567899999999999999999999999999999987532               223345577889999998865     


Q ss_pred             cEEeCcccCCccCCHHHHHHHHHHHHhhccCCCCCCceeEEEeCCCCCHHHHHHHHHHhhhccCCCeEEEechhhhhhhh
Q 014312           84 YNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETFNVPGLYIAVNSVLALAA  163 (427)
Q Consensus        84 ~~~~~Pi~~G~i~d~~~~e~i~~~~l~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfe~~~~~~v~~~~~~~lal~~  163 (427)
                       .++||++||.|.|||+|+.||+|+|++.|+++|++||++++|++++|+.+||+|+|+|||.||+|++|+..++++  |+
T Consensus        65 -~l~~Pie~Giv~~wd~me~iw~~if~~~L~~~Pee~pvllte~pl~p~~nREk~tqi~FE~fnvpa~yva~qavl--ya  141 (372)
T KOG0676|consen   65 -TLKYPIERGIVTDWDDMEKIWHHLFYSELLVAPEEHPVLLTEPPLNPKANREKLTQIMFETFNVPALYVAIQAVL--YA  141 (372)
T ss_pred             -cccCccccccccchHHHHHHHHHHHHHhhccCcccCceEeecCCCCchHhHHHHHHHhhhhcCccHhHHHHHHHH--HH
Confidence             479999999999999999999999999999999999999999999999999999999999999999999777666  99


Q ss_pred             ccCCCCCcceEEEEEcCCCceEEEEeecceecccCceEeccchHHHHHHHHHHHHhcCCCCCCcchHHHHHHhhhhcCcc
Q 014312          164 GYTTSKCEMTGVVVDVGDGATYVVPVAEGYVIGSSIKSIPIAGKDVTLFIQQLMRERGENVPPEDSFEVARKVKEMYCYT  243 (427)
Q Consensus       164 ~g~~~~~~~tglVVDiG~~~t~v~pV~dG~~l~~~~~~~~~gG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~c~v  243 (427)
                      +|     .+||+|||+|++.|+++||++|+++++++.++++||+++|+||+..|.++++.+....+.++++++||++||+
T Consensus       142 ~g-----~ttG~VvD~G~gvt~~vPI~eG~~lp~ai~~ldl~G~dlt~~l~~~L~~~g~s~~~~~~~eIv~diKeklCyv  216 (372)
T KOG0676|consen  142 SG-----RTTGLVVDSGDGVTHVVPIYEGYALPHAILRLDLAGRDLTDYLLKQLRKRGYSFTTSAEFEIVRDIKEKLCYV  216 (372)
T ss_pred             cC-----CeeEEEEEcCCCceeeeecccccccchhhheecccchhhHHHHHHHHHhcccccccccHHHHHHHhHhhhccc
Confidence            98     8899999999999999999999999999999999999999999999999988887778889999999999999


Q ss_pred             cccHHHHHhhccCCCccccceeeccCCCCCCceEEeecceeeecccccccCCCCCCCCCCChHHHHHHHHHhCChhhHHH
Q 014312          244 CSDIVKEYNKHDKEPSKYLKQWRGIKPKTGAPYSCDIGYERFLGPEVFFNPEIYSSDFTTPLPAVIDKCIQSAPIDTRRA  323 (427)
Q Consensus       244 ~~d~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~~i~i~~er~~~~E~LF~P~~~~~~~~~~l~~~i~~~i~~~~~d~r~~  323 (427)
                      +.|+.+|+.. ..........|.+||   |+  .+.+++|||.+||+||+|+..+.+ ..+|++++.++|.+||+|+|+.
T Consensus       217 ald~~~e~~~-~~~~~~l~~~y~lPD---g~--~i~i~~erf~~pE~lFqP~~~g~e-~~gi~~~~~~sI~kcd~dlrk~  289 (372)
T KOG0676|consen  217 ALDFEEEEET-ANTSSSLESSYELPD---GQ--KITIGNERFRCPEVLFQPSLLGME-SPGIHELTVNSIMKCDIDLRKD  289 (372)
T ss_pred             ccccchhhhc-ccccccccccccCCC---CC--EEecCCcccccchhcCChhhcCCC-CCchhHHHHHHHHhCChhHhHH
Confidence            9999999887 322234455688887   87  699999999999999999999998 5899999999999999999999


Q ss_pred             hhcCeEEecCccCcccHHHHHHHHHHHHHHHhhhhhhcccCCccCCCCeeEEEecCCCccceeeecceeecccccccccc
Q 014312          324 LYKNIVLSGGSTMFKDFHRRLQRDLKKIVDARVLASDARLGGEVKAQPVEVNVVSHAIQRYAVWFGGSVLASTPEFFAAC  403 (427)
Q Consensus       324 l~~nIil~GG~s~i~G~~eRL~~eL~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~W~Ggsilasl~~f~~~~  403 (427)
                      ||+||||+||+|++|||.+||++||+.+.                |+..+++|++++++.+++|+||||+|||++|+++|
T Consensus       290 L~~nivLsGGtT~~pGl~~Rl~kEl~~l~----------------P~~~~ikv~~pp~r~~s~WlGgSIlaslstfq~~w  353 (372)
T KOG0676|consen  290 LYENIVLSGGTTMFPGLADRLQKELQALA----------------PSTIKIKVIAPPERKYSAWLGGSILASLSTFQQMW  353 (372)
T ss_pred             HHhheEEeCCcccchhHHHHHHHHHhhcC----------------CCCcceEEecCcccccceecCceeEeecchHhhcc
Confidence            99999999999999999999999999886                55778999999999999999999999999999999


Q ss_pred             cchHHHhhcCcceeeecCC
Q 014312          404 HTKAEYEEYGASICRSNPV  422 (427)
Q Consensus       404 itk~eY~e~G~~~~~~~~~  422 (427)
                      |||+||+|+|++++|||||
T Consensus       354 itk~eY~e~g~~~~~rk~f  372 (372)
T KOG0676|consen  354 ITKEEYEEHGPSIIHRKCF  372 (372)
T ss_pred             ccHHHHhhhCCceeeeccC
Confidence            9999999999999999995

>PTZ00452 actin; Provisional Back     alignment and domain information
>PTZ00466 actin-like protein; Provisional Back     alignment and domain information
>PTZ00280 Actin-related protein 3; Provisional Back     alignment and domain information
>PTZ00281 actin; Provisional Back     alignment and domain information
>PTZ00004 actin-2; Provisional Back     alignment and domain information
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton] Back     alignment and domain information
>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton] Back     alignment and domain information
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton Back     alignment and domain information
>smart00268 ACTIN Actin Back     alignment and domain information
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton Back     alignment and domain information
>KOG0678 consensus Actin-related protein Arp2/3 complex, subunit Arp3 [Cytoskeleton] Back     alignment and domain information
>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton] Back     alignment and domain information
>COG5277 Actin and related proteins [Cytoskeleton] Back     alignment and domain information
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton] Back     alignment and domain information
>KOG0797 consensus Actin-related protein [Cytoskeleton] Back     alignment and domain information
>PRK13930 rod shape-determining protein MreB; Provisional Back     alignment and domain information
>PRK13927 rod shape-determining protein MreB; Provisional Back     alignment and domain information
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family Back     alignment and domain information
>PRK13929 rod-share determining protein MreBH; Provisional Back     alignment and domain information
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes Back     alignment and domain information
>PRK13928 rod shape-determining protein Mbl; Provisional Back     alignment and domain information
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning] Back     alignment and domain information
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein Back     alignment and domain information
>PRK15080 ethanolamine utilization protein EutJ; Provisional Back     alignment and domain information
>CHL00094 dnaK heat shock protein 70 Back     alignment and domain information
>TIGR02350 prok_dnaK chaperone protein DnaK Back     alignment and domain information
>PTZ00186 heat shock 70 kDa precursor protein; Provisional Back     alignment and domain information
>PTZ00400 DnaK-type molecular chaperone; Provisional Back     alignment and domain information
>TIGR01991 HscA Fe-S protein assembly chaperone HscA Back     alignment and domain information
>PLN03184 chloroplast Hsp70; Provisional Back     alignment and domain information
>PRK00290 dnaK molecular chaperone DnaK; Provisional Back     alignment and domain information
>PRK13411 molecular chaperone DnaK; Provisional Back     alignment and domain information
>PRK13410 molecular chaperone DnaK; Provisional Back     alignment and domain information
>PRK01433 hscA chaperone protein HscA; Provisional Back     alignment and domain information
>PTZ00009 heat shock 70 kDa protein; Provisional Back     alignment and domain information
>PRK05183 hscA chaperone protein HscA; Provisional Back     alignment and domain information
>TIGR01174 ftsA cell division protein FtsA Back     alignment and domain information
>PRK09472 ftsA cell division protein FtsA; Reviewed Back     alignment and domain information
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins Back     alignment and domain information
>PRK11678 putative chaperone; Provisional Back     alignment and domain information
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning] Back     alignment and domain information
>TIGR01175 pilM type IV pilus assembly protein PilM Back     alignment and domain information
>PRK13917 plasmid segregation protein ParM; Provisional Back     alignment and domain information
>TIGR03739 PRTRC_D PRTRC system protein D Back     alignment and domain information
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A Back     alignment and domain information
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA [] Back     alignment and domain information
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism] Back     alignment and domain information
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional Back     alignment and domain information
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative Back     alignment and domain information
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15 Back     alignment and domain information
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon Back     alignment and domain information
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional Back     alignment and domain information
>KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR03706 exo_poly_only exopolyphosphatase Back     alignment and domain information
>PRK10854 exopolyphosphatase; Provisional Back     alignment and domain information
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism] Back     alignment and domain information
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T Back     alignment and domain information
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D Back     alignment and domain information
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein Back     alignment and domain information
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis Back     alignment and domain information
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription] Back     alignment and domain information
>PRK13324 pantothenate kinase; Reviewed Back     alignment and domain information
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query427
1k8k_A418 Crystal Structure Of Arp23 COMPLEX Length = 418 1e-136
3dwl_A427 Crystal Structure Of Fission Yeast Arp2/3 Complex L 1e-129
4efh_A375 Acanthamoeba Actin Complex With Spir Domain D Lengt 5e-56
3b63_A365 Actin Filament Model In The Extended Form Of Acroms 1e-54
1yvn_A375 The Yeast Actin Val 159 Asn Mutant Complex With Hum 1e-54
3eks_A375 Crystal Structure Of Monomeric Actin Bound To Cytoc 1e-54
1yag_A375 Structure Of The Yeast Actin-human Gelsolin Segment 1e-54
3b63_C365 Actin Filament Model In The Extended Form Of Acroms 1e-54
2hf3_A374 Crystal Structure Of Monomeric Actin In The Adp Bou 1e-54
3b63_L365 Actin Filament Model In The Extended Form Of Acroms 6e-54
2oan_A375 Structure Of Oxidized Beta-Actin Length = 375 6e-54
3byh_A374 Model Of Actin-Fimbrin Abd2 Complex Length = 374 1e-53
3u4l_A375 Cryocooled Bovine Profilin:actin Crystal Structure 1e-53
1lcu_A371 Polylysine Induces An Antiparallel Actin Dimer That 2e-53
1d4x_A375 Crystal Structure Of Caenorhabditis Elegans Mg-Atp 2e-53
3m6g_A371 Crystal Structure Of Actin In Complex With Lobophor 2e-53
1nlv_A375 Crystal Structure Of Dictyostelium Discoideum Actin 2e-53
2w49_D372 Isometrically Contracting Insect Asynchronous Fligh 2e-53
1dej_A375 Crystal Structure Of A DictyosteliumTETRAHYMENA CHI 2e-53
3b63_E365 Actin Filament Model In The Extended Form Of Acroms 2e-53
1kxp_A375 Crystal Structure Of Human Vitamin D-binding Protei 2e-53
4b1v_A376 Structure Of The Phactr1 Rpel-N Domain Bound To G-A 2e-53
1ijj_A377 The X-Ray Crystal Structure Of The Complex Between 2e-53
1t44_A370 Structural Basis Of Actin Sequestration By Thymosin 2e-53
2btf_A375 The Structure Of Crystalline Profilin-Beta-Actin Le 1e-52
1atn_A373 Atomic Structure Of The Actin:dnase I Complex Lengt 2e-52
3g37_O376 Cryo-Em Structure Of Actin Filament In The Presence 2e-52
1qz5_A375 Structure Of Rabbit Actin In Complex With Kabiramid 2e-52
1c0g_A375 Crystal Structure Of 1:1 Complex Between Gelsolin S 3e-52
2gwj_A371 Spvb Adp-Ribosylated Actin: Hexagonal Crystal Form 3e-52
1eqy_A377 Complex Between Rabbit Muscle Alpha-Actin: Human Ge 3e-52
3chw_A375 Complex Of Dictyostelium Discoideum Actin With Prof 4e-52
3w3d_A374 Crystal Structure Of Smooth Muscle G Actin Dnase I 6e-52
1c0f_A368 Crystal Structure Of Dictyostelium Caatp-Actin In C 1e-51
3ci5_A375 Complex Of Phosphorylated Dictyostelium Discoideum 1e-51
3mn5_A359 Structures Of Actin-Bound Wh2 Domains Of Spire And 4e-51
3b63_B364 Actin Filament Model In The Extended Form Of Acroms 4e-51
3a5l_C375 Crystal Structure Of A Dictyostelium P109a Mg2+-Act 1e-50
3a5m_C375 Crystal Structure Of A Dictyostelium P109i Mg2+-Act 2e-50
3b63_D357 Actin Filament Model In The Extended Form Of Acroms 1e-49
3b63_F357 Actin Filament Model In The Extended Form Of Acroms 6e-49
2p9k_B394 Crystal Structure Of Bovine Arp23 COMPLEX CO-Crysta 3e-45
1k8k_B394 Crystal Structure Of Arp23 COMPLEX Length = 394 4e-45
3qb0_A498 Crystal Structure Of Actin-Related Protein Arp4 Fro 4e-07
4i6m_A477 Structure Of Arp7-arp9-snf2(hsa)-rtt102 Subcomplex 2e-04
>pdb|1K8K|A Chain A, Crystal Structure Of Arp23 COMPLEX Length = 418 Back     alignment and structure 
Iteration: 1

 Score =  483 bits (1242), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 246/425 (57%), Positives = 305/425 (71%), Gaps = 18/425 (4%)
Query: 7   PAVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNA--GVMA 64
           PA V+D GTGYTK+G+AGN EP FI+P+ +A+ ES        +K    AQ     GV  
Sbjct: 6   PACVVDCGTGYTKLGYAGNTEPQFIIPSCIAIKES--------AKVGDQAQRRVMKGV-D 56
Query: 65  DLDFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPEDHYFLL 124
           DLDFFIGDEA+ K     TY   +PIRHG V++WD MER+ +Q IF YLR +PEDHYFLL
Sbjct: 57  DLDFFIGDEAIEKP----TYATKWPIRHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLL 112
Query: 125 TESPLTAPESREYTGEIMFETFNVPGLYIAVNSVLALAAGYTTSKC---EMXXXXXXXXX 181
           TE PL  PE+REYT EIMFE+FNVPGLYIAV +VLALAA +T+ +     +         
Sbjct: 113 TEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERTLTGTVIDSGD 172
Query: 182 XXXXXXPVAEGYVIGSSIKSIPIAGKDVTLFIQQLMRERGENVPPEDSFEVARKVKEMYC 241
                 PVAEGYVIGS IK IPIAG+D+T FIQQL+R+R   +PPE S E A+ VKE Y 
Sbjct: 173 GVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLRDREVGIPPEQSLETAKAVKERYS 232
Query: 242 YTCSDIVKEYNKHDKEPSKYLKQWRGIKPKTGAPYSCDIGYERFLGPEVFFNPEIYSSDF 301
           Y C D+VKE+NK+D + SK++KQ+ GI   +   +S D+GYERFLGPE+FF+PE  + DF
Sbjct: 233 YVCPDLVKEFNKYDTDGSKWIKQYTGINAISKKEFSIDVGYERFLGPEIFFHPEFANPDF 292
Query: 302 TTPLPAVIDKCIQSAPIDTRRALYKNIVLSGGSTMFKDFHRRLQRDLKKIVDARVLASDA 361
           T P+  V+D+ IQ+ PID RR LYKNIVLSGGSTMF+DF RRLQRDLK+ VDAR+  S+ 
Sbjct: 293 TQPISEVVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEE 352
Query: 362 RLGGEVKAQPVEVNVVSHAIQRYAVWFGGSVLASTPEFFAACHTKAEYEEYGASICRSNP 421
             GG +K +P++V V++H +QRYAVWFGGS+LASTPEF+  CHTK +YEE G SICR NP
Sbjct: 353 LSGGRLKPKPIDVQVITHHMQRYAVWFGGSMLASTPEFYQVCHTKKDYEEIGPSICRHNP 412
Query: 422 VFKGM 426
           VF  M
Sbjct: 413 VFGVM 417
>pdb|3DWL|A Chain A, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking The Arp2 Subunit Length = 427 Back     alignment and structure
>pdb|4EFH|A Chain A, Acanthamoeba Actin Complex With Spir Domain D Length = 375 Back     alignment and structure
>pdb|3B63|A Chain A, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365 Back     alignment and structure
>pdb|1YVN|A Chain A, The Yeast Actin Val 159 Asn Mutant Complex With Human Gelsolin Segment 1 Length = 375 Back     alignment and structure
>pdb|3EKS|A Chain A, Crystal Structure Of Monomeric Actin Bound To Cytochalasin D Length = 375 Back     alignment and structure
>pdb|1YAG|A Chain A, Structure Of The Yeast Actin-human Gelsolin Segment 1 Complex Length = 375 Back     alignment and structure
>pdb|3B63|C Chain C, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365 Back     alignment and structure
>pdb|2HF3|A Chain A, Crystal Structure Of Monomeric Actin In The Adp Bound State Length = 374 Back     alignment and structure
>pdb|3B63|L Chain L, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365 Back     alignment and structure
>pdb|2OAN|A Chain A, Structure Of Oxidized Beta-Actin Length = 375 Back     alignment and structure
>pdb|3BYH|A Chain A, Model Of Actin-Fimbrin Abd2 Complex Length = 374 Back     alignment and structure
>pdb|3U4L|A Chain A, Cryocooled Bovine Profilin:actin Crystal Structure To 2.4 A Length = 375 Back     alignment and structure
>pdb|1LCU|A Chain A, Polylysine Induces An Antiparallel Actin Dimer That Nucleates Filament Assembly: Crystal Structure At 3.5 A Resolution Length = 371 Back     alignment and structure
>pdb|1D4X|A Chain A, Crystal Structure Of Caenorhabditis Elegans Mg-Atp Actin Complexed With Human Gelsolin Segment 1 At 1.75 A Resolution Length = 375 Back     alignment and structure
>pdb|3M6G|A Chain A, Crystal Structure Of Actin In Complex With Lobophorolide Length = 371 Back     alignment and structure
>pdb|1NLV|A Chain A, Crystal Structure Of Dictyostelium Discoideum Actin Complexed With Ca Atp And Human Gelsolin Segment 1 Length = 375 Back     alignment and structure
>pdb|2W49|D Chain D, Isometrically Contracting Insect Asynchronous Flight Muscle Length = 372 Back     alignment and structure
>pdb|1DEJ|A Chain A, Crystal Structure Of A DictyosteliumTETRAHYMENA CHIMERA Actin (Mutant 646: Q228kT229AA230YA231KS232EE360H) IN Complex With Human Gelsolin Segment 1 Length = 375 Back     alignment and structure
>pdb|3B63|E Chain E, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365 Back     alignment and structure
>pdb|1KXP|A Chain A, Crystal Structure Of Human Vitamin D-binding Protein In Complex With Skeletal Actin Length = 375 Back     alignment and structure
>pdb|4B1V|A Chain A, Structure Of The Phactr1 Rpel-N Domain Bound To G-Actin Length = 376 Back     alignment and structure
>pdb|1IJJ|A Chain A, The X-Ray Crystal Structure Of The Complex Between Rabbit Skeletal Muscle Actin And Latrunculin A At 2.85 A Resolution Length = 377 Back     alignment and structure
>pdb|1T44|A Chain A, Structural Basis Of Actin Sequestration By Thymosin-B4: Implications For Arp23 ACTIVATION Length = 370 Back     alignment and structure
>pdb|2BTF|A Chain A, The Structure Of Crystalline Profilin-Beta-Actin Length = 375 Back     alignment and structure
>pdb|1ATN|A Chain A, Atomic Structure Of The Actin:dnase I Complex Length = 373 Back     alignment and structure
>pdb|3G37|O Chain O, Cryo-Em Structure Of Actin Filament In The Presence Of Phosphate Length = 376 Back     alignment and structure
>pdb|1QZ5|A Chain A, Structure Of Rabbit Actin In Complex With Kabiramide C Length = 375 Back     alignment and structure
>pdb|1C0G|A Chain A, Crystal Structure Of 1:1 Complex Between Gelsolin Segment 1 And A DictyosteliumTETRAHYMENA CHIMERA ACTIN (MUTANT 228: Q228kT229AA230YE360H) Length = 375 Back     alignment and structure
>pdb|2GWJ|A Chain A, Spvb Adp-Ribosylated Actin: Hexagonal Crystal Form Length = 371 Back     alignment and structure
>pdb|1EQY|A Chain A, Complex Between Rabbit Muscle Alpha-Actin: Human Gelsolin Domain 1 Length = 377 Back     alignment and structure
>pdb|3CHW|A Chain A, Complex Of Dictyostelium Discoideum Actin With Profilin And The Last Poly-Pro Of Human Vasp Length = 375 Back     alignment and structure
>pdb|3W3D|A Chain A, Crystal Structure Of Smooth Muscle G Actin Dnase I Complex Length = 374 Back     alignment and structure
>pdb|1C0F|A Chain A, Crystal Structure Of Dictyostelium Caatp-Actin In Complex With Gelsolin Segment 1 Length = 368 Back     alignment and structure
>pdb|3CI5|A Chain A, Complex Of Phosphorylated Dictyostelium Discoideum Actin With Gelsolin Length = 375 Back     alignment and structure
>pdb|3MN5|A Chain A, Structures Of Actin-Bound Wh2 Domains Of Spire And The Implication For Filament Nucleation Length = 359 Back     alignment and structure
>pdb|3B63|B Chain B, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 364 Back     alignment and structure
>pdb|3A5L|C Chain C, Crystal Structure Of A Dictyostelium P109a Mg2+-Actin In Complex With Human Gelsolin Segment 1 Length = 375 Back     alignment and structure
>pdb|3A5M|C Chain C, Crystal Structure Of A Dictyostelium P109i Mg2+-Actin In Complex With Human Gelsolin Segment 1 Length = 375 Back     alignment and structure
>pdb|3B63|D Chain D, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 357 Back     alignment and structure
>pdb|3B63|F Chain F, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 357 Back     alignment and structure
>pdb|2P9K|B Chain B, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized With Atp And Crosslinked With Glutaraldehyde Length = 394 Back     alignment and structure
>pdb|1K8K|B Chain B, Crystal Structure Of Arp23 COMPLEX Length = 394 Back     alignment and structure
>pdb|3QB0|A Chain A, Crystal Structure Of Actin-Related Protein Arp4 From S. Cerevisiae Complexed With Atp Length = 498 Back     alignment and structure
>pdb|4I6M|A Chain A, Structure Of Arp7-arp9-snf2(hsa)-rtt102 Subcomplex Of Swi/snf Chromatin Remodeler Length = 477 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query427
1k8k_A418 ARP3, actin-like protein 3, actin-2; beta-propelle 0.0
3dwl_A427 Actin-related protein 3; propellor, actin-binding, 0.0
1k8k_B394 ARP2, actin-like protein 2; beta-propeller, struct 1e-164
2fxu_A375 Alpha-actin-1, actin, alpha skeletal muscle; actin 1e-154
3qb0_A498 Actin-related protein 4; actin fold, ATP binding, 8e-93
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-05
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A Length = 418 Back     alignment and structure
 Score =  537 bits (1386), Expect = 0.0
 Identities = 251/429 (58%), Positives = 316/429 (73%), Gaps = 15/429 (3%)

Query: 1   MDPTSRPAVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQSRSSSKANWLAQYNA 60
           M     PA V+D GTGYTK+G+AGN EP FI+P+ +A+ ES       +   +   +   
Sbjct: 1   MA-GRLPACVVDCGTGYTKLGYAGNTEPQFIIPSCIAIKES-------AKVGDQAQRRVM 52

Query: 61  GVMADLDFFIGDEAVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPEDH 120
             + DLDFFIGDEA+ K     TY   +PIRHG V++WD MER+ +Q IF YLR +PEDH
Sbjct: 53  KGVDDLDFFIGDEAIEKP----TYATKWPIRHGIVEDWDLMERFMEQVIFKYLRAEPEDH 108

Query: 121 YFLLTESPLTAPESREYTGEIMFETFNVPGLYIAVNSVLALAAGYTTSKCE---MTGVVV 177
           YFLLTE PL  PE+REYT EIMFE+FNVPGLYIAV +VLALAA +T+ +     +TG V+
Sbjct: 109 YFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERTLTGTVI 168

Query: 178 DVGDGATYVVPVAEGYVIGSSIKSIPIAGKDVTLFIQQLMRERGENVPPEDSFEVARKVK 237
           D GDG T+V+PVAEGYVIGS IK IPIAG+D+T FIQQL+R+R   +PPE S E A+ VK
Sbjct: 169 DSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLRDREVGIPPEQSLETAKAVK 228

Query: 238 EMYCYTCSDIVKEYNKHDKEPSKYLKQWRGIKPKTGAPYSCDIGYERFLGPEVFFNPEIY 297
           E Y Y C D+VKE+NK+D + SK++KQ+ GI   +   +S D+GYERFLGPE+FF+PE  
Sbjct: 229 ERYSYVCPDLVKEFNKYDTDGSKWIKQYTGINAISKKEFSIDVGYERFLGPEIFFHPEFA 288

Query: 298 SSDFTTPLPAVIDKCIQSAPIDTRRALYKNIVLSGGSTMFKDFHRRLQRDLKKIVDARVL 357
           + DFT P+  V+D+ IQ+ PID RR LYKNIVLSGGSTMF+DF RRLQRDLK+ VDAR+ 
Sbjct: 289 NPDFTQPISEVVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVDARLK 348

Query: 358 ASDARLGGEVKAQPVEVNVVSHAIQRYAVWFGGSVLASTPEFFAACHTKAEYEEYGASIC 417
            S+   GG +K +P++V V++H +QRYAVWFGGS+LASTPEF+  CHTK +YEE G SIC
Sbjct: 349 LSEELSGGRLKPKPIDVQVITHHMQRYAVWFGGSMLASTPEFYQVCHTKKDYEEIGPSIC 408

Query: 418 RSNPVFKGM 426
           R NPVF  M
Sbjct: 409 RHNPVFGVM 417
>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 427 Back     alignment and structure
>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B* Length = 394 Back     alignment and structure
>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ... Length = 375 Back     alignment and structure
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} Length = 498 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query427
3dwl_A427 Actin-related protein 3; propellor, actin-binding, 100.0
3qb0_A498 Actin-related protein 4; actin fold, ATP binding, 100.0
4fo0_A593 Actin-related protein 8; chromatin remodeling, nuc 100.0
1k8k_A418 ARP3, actin-like protein 3, actin-2; beta-propelle 100.0
2fxu_A375 Alpha-actin-1, actin, alpha skeletal muscle; actin 100.0
1k8k_B394 ARP2, actin-like protein 2; beta-propeller, struct 100.0
4am6_A655 Actin-like protein ARP8; nuclear protein, chromati 100.0
1jce_A344 ROD shape-determining protein MREB; MBL, actin, HS 100.0
3h1q_A272 Ethanolamine utilization protein EUTJ; ethanolamin 99.88
2v7y_A 509 Chaperone protein DNAK; HSP70, heat shock protein, 99.87
1dkg_D383 Molecular chaperone DNAK; HSP70, GRPE, nucleotide 99.83
3qfu_A394 78 kDa glucose-regulated protein homolog; HSP70, K 99.81
3i33_A404 Heat shock-related 70 kDa protein 2; protein-ADP c 99.76
1yuw_A 554 Heat shock cognate 71 kDa protein; chaperone; 2.60 99.68
2kho_A 605 Heat shock protein 70; molecular chaperone, HSP70, 99.61
4gni_A409 Putative heat shock protein; HSP70-type ATPase, AT 99.54
3d2f_A 675 Heat shock protein homolog SSE1; nucleotide exchan 99.52
2ych_A377 Competence protein PILM; cell cycle, type IV pilus 99.47
2fsj_A346 Hypothetical protein TA0583; actin homologs, archa 99.42
4b9q_A 605 Chaperone protein DNAK; HET: ATP; 2.40A {Escherich 99.35
4a2a_A419 Cell division protein FTSA, putative; cell cycle, 99.31
4apw_A329 ALP12; actin-like protein; 19.70A {Clostridium tet 99.0
2zgy_A320 Plasmid segregation protein PARM; plasmid partitio 98.98
3js6_A355 Uncharacterized PARM protein; partition, segregati 98.93
1nbw_A607 Glycerol dehydratase reactivase alpha subunit; mol 98.01
2d0o_A610 DIOL dehydratase-reactivating factor large subunit 98.01
1t6c_A315 Exopolyphosphatase; alpha/beta protein, actin-like 95.33
3cer_A343 Possible exopolyphosphatase-like protein; NESG, BL 95.32
3mdq_A315 Exopolyphosphatase; structural genomics, joint cen 95.22
1u6z_A 513 Exopolyphosphatase; alpha/beta protein, askha (ace 94.25
3hi0_A 508 Putative exopolyphosphatase; 17739545, structural 92.72
4ehu_A276 Activator of 2-hydroxyisocaproyl-COA dehydratase; 91.08
4db3_A327 Glcnac kinase, N-acetyl-D-glucosamine kinase; stru 89.39
3cet_A334 Conserved archaeal protein; Q6M145, MRR63, NESG, X 88.02
3r8e_A321 Hypothetical sugar kinase; ribonuclease H-like mot 87.12
3aap_A353 Ectonucleoside triphosphate diphosphohydrolase I; 86.8
2gup_A292 ROK family protein; sugar kinase, streptococcus pn 86.78
2h3g_X268 Biosynthetic protein; pantothenate kinase, anthrax 80.3
>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Back     alignment and structure
Probab=100.00  E-value=2.7e-91  Score=695.37  Aligned_cols=416  Identities=57%  Similarity=1.002  Sum_probs=329.7

Q ss_pred             CCCCCCCcEEEeCCCccEEEEEcCCCCCceeeeeeEEeecccccc-ccccchhhhhh------hhccCCCCCCCeEEccc
Q 014312            1 MDPTSRPAVVIDNGTGYTKMGFAGNVEPCFILPTVVAVNESFLNQ-SRSSSKANWLA------QYNAGVMADLDFFIGDE   73 (427)
Q Consensus         1 ~~~~~~~~vVlD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~-~~~~~~~~~~~------~~~~~~~~~~~~~vg~~   73 (427)
                      |+ +..++||||+||+++|+||||++.|++++||++|+++..... ...+++++|..      ...+.+...++++||++
T Consensus         1 m~-~~~~~iViDnGs~~~KaG~ag~~~P~~v~Ps~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~e   79 (427)
T 3dwl_A            1 MA-SFNVPIIMDNGTGYSKLGYAGNDAPSYVFPTVIATRSAGASSGPAVSSKPSYMASKGSGHLSSKRATEDLDFFIGND   79 (427)
T ss_dssp             ---CCCSCEEECCCSSBC-CEETTSSSCSCCCBCCEECC------------------------------CCSSCCEETHH
T ss_pred             CC-CCCCeEEEECCCCeEEEEECCCCCCCCcCCceEEeecccccccccccccccccccccccccccccCcccCCeEEchH
Confidence            77 789999999999999999999999999999999998643110 00111222211      01122445678999999


Q ss_pred             cccccCCCCCcEEeCcccCCccCCHHHHHHHHHHHHhhccCCCCCCceeEEEeCCCCCHHHHHHHHHHhhhccCCCeEEE
Q 014312           74 AVTKSRSSSTYNLSYPIRHGQVDNWDAMERYWQQCIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETFNVPGLYI  153 (427)
Q Consensus        74 ~~~~~~~~~~~~~~~Pi~~G~i~d~~~~e~i~~~~l~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lfe~~~~~~v~~  153 (427)
                      |......  .+.+++|+++|.|.|||++|++|+|+|++.|++++++||+||+||+++++..|++++|++||.|++|++|+
T Consensus        80 a~~~~~~--~l~~~~Pi~~GvI~dwd~~e~iw~~~~~~~L~v~~~~~pvlltep~~~~~~~re~~~ei~FE~~~~p~v~l  157 (427)
T 3dwl_A           80 ALKKASA--GYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFESFNCAGLYI  157 (427)
T ss_dssp             HHHTHHH--HCCCCCSEETTEECCHHHHHHHHHHHHHTTSCCCGGGCEEEEEECTTCCHHHHHHHHHHHTTTTCCSEEEE
T ss_pred             HhhCccc--CcEEecCcccCeeccHHHHHHHHHHHHhHhhCCCCcCCcEEEEcCCCCCHHHHHHHHHHHHHhccCceeee
Confidence            9987742  48999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             echhhhhhhhccCCC---CCcceEEEEEcCCCceEEEEeecceecccCceEeccchHHHHHHHHHHHHhcCCCCCCcchH
Q 014312          154 AVNSVLALAAGYTTS---KCEMTGVVVDVGDGATYVVPVAEGYVIGSSIKSIPIAGKDVTLFIQQLMRERGENVPPEDSF  230 (427)
Q Consensus       154 ~~~~~lal~~~g~~~---~~~~tglVVDiG~~~t~v~pV~dG~~l~~~~~~~~~gG~~l~~~l~~~l~~~~~~~~~~~~~  230 (427)
                      +.+++||+|++|+..   .+.+||+|||+|++.|+|+||++|++++++++++++||+++|++|.++|+.++..   ..+.
T Consensus       158 ~~~~vla~~a~G~~~~~~~~~~tglVVDiG~g~T~v~PV~~G~~l~~~~~rl~~gG~~lt~~L~~lL~~~~~~---~~~~  234 (427)
T 3dwl_A          158 AVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDRNEP---DSSL  234 (427)
T ss_dssp             EEHHHHHHHGGGGSTTTCSCCCCEEEEEESSSCEEEEEEETTEECGGGCEEESCCHHHHHHHHHHTTC-----------C
T ss_pred             cchHHHHHHhcCCcccccCCCceEEEEECCCCceEEEEEECCEEehhhheeccccHHHHHHHHHHHHHHcCCC---chhH
Confidence            999999999998421   0147999999999999999999999999999999999999999999999988775   3566


Q ss_pred             HHHHHhhhhcCcccccHHHHHhhccCCCccccceeeccCCCCCCceEEeecceeeecccccccCCCCCCCCCCChHHHHH
Q 014312          231 EVARKVKEMYCYTCSDIVKEYNKHDKEPSKYLKQWRGIKPKTGAPYSCDIGYERFLGPEVFFNPEIYSSDFTTPLPAVID  310 (427)
Q Consensus       231 ~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~~~~~~~~~~g~~~~i~i~~er~~~~E~LF~P~~~~~~~~~~l~~~i~  310 (427)
                      +++++|||++|||+.|+.+|++.+...+. ....|.+. +.+|+++.++++.|||++||+||+|++++.+...+|+++|.
T Consensus       235 ~~~~~IKe~~cyv~~d~~~e~~~~~~~~~-~~~~~~l~-~~~g~~~~i~ig~erf~~pE~LF~P~~~g~~~~~gI~~~i~  312 (427)
T 3dwl_A          235 KTAERIKEECCYVCPDIVKEFSRFDREPD-RYLKYASE-SITGHSTTIDVGFERFLAPEIFFNPEIASSDFLTPLPELVD  312 (427)
T ss_dssp             HHHHHHHHHHCCCCSCHHHHHHHTTC------CCBCC----------CBCCTHHHHSGGGGTCGGGTCSSCCSCHHHHHH
T ss_pred             HHHHHHHHhcCcccCCHHHHHHHhhcCcc-ccceeEee-CCCCCeeEEEEChHhhhChhhccCchhcCCccCCCccHHHH
Confidence            89999999999999999999887665442 35667761 12388789999999999999999999998874479999999


Q ss_pred             HHHHhCChhhHHHhhcCeEEecCccCcccHHHHHHHHHHHHHHHhhhhhhcccCCccCCCCeeEEEecCCCccceeeecc
Q 014312          311 KCIQSAPIDTRRALYKNIVLSGGSTMFKDFHRRLQRDLKKIVDARVLASDARLGGEVKAQPVEVNVVSHAIQRYAVWFGG  390 (427)
Q Consensus       311 ~~i~~~~~d~r~~l~~nIil~GG~s~i~G~~eRL~~eL~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~W~Gg  390 (427)
                      ++|++||+|+|+.|++||||+||+|++|||.+||++||+.+++.++.......|.  +|..++++|.++++|+|++|+||
T Consensus       313 ~sI~~c~~dlr~~L~~nIvLtGG~sl~~G~~~RL~~El~~l~~~~~~~~~~~~~~--~p~~~~vkv~~~~~r~~s~WiGG  390 (427)
T 3dwl_A          313 NVVQSSPIDVRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGA--KSGGVDVNVISHKRQRNAVWFGG  390 (427)
T ss_dssp             HHHHTSCHHHHHHHHHCEEEESGGGCSTTTTHHHHHHHHHHHTTC---------------CCCCCEECCTTCTTHHHHHH
T ss_pred             HHHHhCCHHHHHHHhCCEEEEccCcCCCChHHHHHHHHHHhhhhhcccccccccc--CCCceeEEEecCCccccceecCc
Confidence            9999999999999999999999999999999999999999986544332222211  25567899999999999999999


Q ss_pred             eeecccccccccccchHHHhhcCcceeeecCCCCCC
Q 014312          391 SVLASTPEFFAACHTKAEYEEYGASICRSNPVFKGM  426 (427)
Q Consensus       391 silasl~~f~~~~itk~eY~e~G~~~~~~~~~~~~~  426 (427)
                      ||||+|++|+++||||+||+|+|++|||||++|+++
T Consensus       391 Silasl~~f~~~witk~EYeE~G~~iv~~~~~~~~~  426 (427)
T 3dwl_A          391 SLLAQTPEFGSYCHTKADYEEYGASIARRYQIFGNS  426 (427)
T ss_dssp             HHHHHSTTHHHHSEEHHHHHHSCGGGGSCCCC----
T ss_pred             eeeccccchhheeEEHHHHhhhChHhheecccccCC
Confidence            999999999999999999999999999999999986
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} Back     alignment and structure
>4fo0_A Actin-related protein 8; chromatin remodeling, nucleosomes, NU gene regulation; HET: ATP; 2.60A {Homo sapiens} Back     alignment and structure
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A Back     alignment and structure
>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ... Back     alignment and structure
>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B* Back     alignment and structure
>4am6_A Actin-like protein ARP8; nuclear protein, chromatin remodelling complex, ATP-binding nuclear actin-related protein; 2.70A {Saccharomyces cerevisiae} PDB: 4am7_A* Back     alignment and structure
>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A Back     alignment and structure
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid} Back     alignment and structure
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} Back     alignment and structure
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 Back     alignment and structure
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ... Back     alignment and structure
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A* Back     alignment and structure
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} Back     alignment and structure
>4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var} Back     alignment and structure
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A* Back     alignment and structure
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus} Back     alignment and structure
>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A* Back     alignment and structure
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D Back     alignment and structure
>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A* Back     alignment and structure
>4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani} Back     alignment and structure
>2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A Back     alignment and structure
>3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus} Back     alignment and structure
>1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 Back     alignment and structure
>2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 PDB: 2d0p_A Back     alignment and structure
>1t6c_A Exopolyphosphatase; alpha/beta protein, actin-like fold, hydrolase; 1.53A {Aquifex aeolicus} SCOP: c.55.1.8 c.55.1.8 PDB: 1t6d_A 2j4r_A* Back     alignment and structure
>3cer_A Possible exopolyphosphatase-like protein; NESG, BLR13, Q8G5J2, X-RAY, structure, structural genomics, PSI-2; 2.40A {Bifidobacterium longum NCC2705} Back     alignment and structure
>3mdq_A Exopolyphosphatase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 1.50A {Cytophaga hutchinsonii} Back     alignment and structure
>1u6z_A Exopolyphosphatase; alpha/beta protein, askha (acetate and sugar kinases, HSC70, superfamily; 1.90A {Escherichia coli} SCOP: a.211.1.5 c.55.1.8 c.55.1.8 PDB: 2flo_A* Back     alignment and structure
>3hi0_A Putative exopolyphosphatase; 17739545, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 2.30A {Agrobacterium tumefaciens str} Back     alignment and structure
>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A Back     alignment and structure
>4db3_A Glcnac kinase, N-acetyl-D-glucosamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; 1.95A {Vibrio vulnificus} Back     alignment and structure
>3cet_A Conserved archaeal protein; Q6M145, MRR63, NESG, XRAY, structure, structural genomics, PSI-2, protein structure initiative; 1.80A {Methanococcus maripaludis S2} PDB: 3c0b_A Back     alignment and structure
>3r8e_A Hypothetical sugar kinase; ribonuclease H-like motif, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.65A {Cytophaga hutchinsonii} Back     alignment and structure
>3aap_A Ectonucleoside triphosphate diphosphohydrolase I; adenosine triphosphatase, ntpdase; 1.60A {Legionella pneumophila} PDB: 3aaq_A* 3aar_A* Back     alignment and structure
>2gup_A ROK family protein; sugar kinase, streptococcus pneumoniae TIGR4, AP sucrose, structural genomics, PSI; HET: SUC; 2.01A {Streptococcus pneumoniae} SCOP: c.55.1.10 c.55.1.10 Back     alignment and structure
>2h3g_X Biosynthetic protein; pantothenate kinase, anthrax, type III pantothenate kinase, COAX, COAA, askha; 2.00A {Bacillus anthracis str} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 427
d1k8ka2258 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 3e-87
d2fxua2225 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxI 2e-60
d1k8kb1190 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 9e-53
d1k8ka1158 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 { 7e-49
d2fxua1140 c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: 3e-42
>d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Length = 258 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin-related protein 3, Arp3
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  264 bits (675), Expect = 3e-87
 Identities = 158/255 (61%), Positives = 199/255 (78%)

Query: 172 MTGVVVDVGDGATYVVPVAEGYVIGSSIKSIPIAGKDVTLFIQQLMRERGENVPPEDSFE 231
           +TG V+D GDG T+V+PVAEGYVIGS IK IPIAG+D+T FIQQL+R+R   +PPE S E
Sbjct: 3   LTGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLRDREVGIPPEQSLE 62

Query: 232 VARKVKEMYCYTCSDIVKEYNKHDKEPSKYLKQWRGIKPKTGAPYSCDIGYERFLGPEVF 291
            A+ VKE Y Y C D+VKE+NK+D + SK++KQ+ GI   +   +S D+GYERFLGPE+F
Sbjct: 63  TAKAVKERYSYVCPDLVKEFNKYDTDGSKWIKQYTGINAISKKEFSIDVGYERFLGPEIF 122

Query: 292 FNPEIYSSDFTTPLPAVIDKCIQSAPIDTRRALYKNIVLSGGSTMFKDFHRRLQRDLKKI 351
           F+PE  + DFT P+  V+D+ IQ+ PID RR LYKNIVLSGGSTMF+DF RRLQRDLK+ 
Sbjct: 123 FHPEFANPDFTQPISEVVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRT 182

Query: 352 VDARVLASDARLGGEVKAQPVEVNVVSHAIQRYAVWFGGSVLASTPEFFAACHTKAEYEE 411
           VDAR+  S+   GG +K +P++V V++H +QRYAVWFGGS+LASTPEF+  CHTK +YEE
Sbjct: 183 VDARLKLSEELSGGRLKPKPIDVQVITHHMQRYAVWFGGSMLASTPEFYQVCHTKKDYEE 242

Query: 412 YGASICRSNPVFKGM 426
            G SICR NPVF  M
Sbjct: 243 IGPSICRHNPVFGVM 257
>d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]} Length = 225 Back     information, alignment and structure
>d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow (Bos taurus) [TaxId: 9913]} Length = 190 Back     information, alignment and structure
>d1k8ka1 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Length = 158 Back     information, alignment and structure
>d2fxua1 c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: 9913]} Length = 140 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query427
d1k8ka2258 Actin-related protein 3, Arp3 {Cow (Bos taurus) [T 100.0
d2fxua2225 Actin {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1k8kb1190 Actin-related protein 2, Arp2 {Cow (Bos taurus) [T 100.0
d1k8ka1158 Actin-related protein 3, Arp3 {Cow (Bos taurus) [T 100.0
d2fxua1140 Actin {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1e4ft2191 Cell division protein FtsA {Thermotoga maritima [T 99.2
d1jcea2196 Prokaryotic actin homolog MreB {Thermotoga maritim 98.86
d1dkgd2198 Heat shock protein 70kDa, ATPase fragment {Escheri 98.54
d1bupa2193 Heat shock protein 70kDa, ATPase fragment {Cow (Bo 98.21
d1jcea1137 Prokaryotic actin homolog MreB {Thermotoga maritim 98.14
d2zgya2163 Plasmid segregation protein ParM {Escherichia coli 97.66
d1bupa1185 Heat shock protein 70kDa, ATPase fragment {Cow (Bo 97.17
d1dkgd1183 Heat shock protein 70kDa, ATPase fragment {Escheri 96.98
d2fsja1161 Hypothetical protein Ta0583 {Archaeon Thermoplasma 96.85
d2fsja2164 Hypothetical protein Ta0583 {Archaeon Thermoplasma 90.07
d2zgya1157 Plasmid segregation protein ParM {Escherichia coli 84.37
>d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin-related protein 3, Arp3
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.7e-57  Score=423.01  Aligned_cols=256  Identities=62%  Similarity=1.088  Sum_probs=226.2

Q ss_pred             cceEEEEEcCCCceEEEEeecceecccCceEeccchHHHHHHHHHHHHhcCCCCCCcchHHHHHHhhhhcCcccccHHHH
Q 014312          171 EMTGVVVDVGDGATYVVPVAEGYVIGSSIKSIPIAGKDVTLFIQQLMRERGENVPPEDSFEVARKVKEMYCYTCSDIVKE  250 (427)
Q Consensus       171 ~~tglVVDiG~~~t~v~pV~dG~~l~~~~~~~~~gG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~e  250 (427)
                      ..||||||+|++.|+|+||+||++++++++++++||++|+++|.++|++++..+.+..+.+.++.+|+++||++.|+.++
T Consensus         2 ~~TGlVVDiG~~~T~v~PV~eG~~l~~~~~~~~~GG~~lt~~L~~~L~~~~~~~~~~~~~~~~~~~ke~~~~v~~d~~~e   81 (258)
T d1k8ka2           2 TLTGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLRDREVGIPPEQSLETAKAVKERYSYVCPDLVKE   81 (258)
T ss_dssp             CCCEEEEEESSSCEEEEEEETTEECGGGCEEESCSHHHHHHHHHHHHHTTCCCCCGGGHHHHHHHHHHHHCCCCSCHHHH
T ss_pred             CCEEEEEEcCCCcEEEEEEECCEEchhheEEEeCcHHHHHHHHHHHHHHcCCCCCcHHHHHHHHhHHhhhcccccchHHH
Confidence            46899999999999999999999999999999999999999999999999998887778899999999999999999999


Q ss_pred             HhhccCCCccccceeeccCCCCCCceEEeecceeeecccccccCCCCCCCCCCChHHHHHHHHHhCChhhHHHhhcCeEE
Q 014312          251 YNKHDKEPSKYLKQWRGIKPKTGAPYSCDIGYERFLGPEVFFNPEIYSSDFTTPLPAVIDKCIQSAPIDTRRALYKNIVL  330 (427)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~g~~~~i~i~~er~~~~E~LF~P~~~~~~~~~~l~~~i~~~i~~~~~d~r~~l~~nIil  330 (427)
                      ++.+...+......|..++......+.++++.|||.+||+||+|+..+.+...+|+++|.++|++||+|+|+.|++||+|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~er~~~~E~lF~p~~~~~~~~~~l~~~i~~si~~~~~d~r~~L~~nIvl  161 (258)
T d1k8ka2          82 FNKYDTDGSKWIKQYTGINAISKKEFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPLYKNIVL  161 (258)
T ss_dssp             HHHHHHSGGGTCEEEEEECTTTCCEEEEEECTHHHHHHHTTTCGGGTCTTCCCCHHHHHHHHHHHSCGGGTTHHHHCEEE
T ss_pred             HHhhcccccccccccccccccCCCCeEEecCccceeccHHHhhhhhhcccccccchHHHHHHHHhccHHhhHHHHhCEEE
Confidence            88776555455567777775555667899999999999999999998876567899999999999999999999999999


Q ss_pred             ecCccCcccHHHHHHHHHHHHHHHhhhhhhcccCCccCCCCeeEEEecCCCccceeeecceeecccccccccccchHHHh
Q 014312          331 SGGSTMFKDFHRRLQRDLKKIVDARVLASDARLGGEVKAQPVEVNVVSHAIQRYAVWFGGSVLASTPEFFAACHTKAEYE  410 (427)
Q Consensus       331 ~GG~s~i~G~~eRL~~eL~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~W~Ggsilasl~~f~~~~itk~eY~  410 (427)
                      +||+|++|||.+||++||...++.............++|..++++|.++++|++++|+||||+|+|++|+++||||+||+
T Consensus       162 ~GG~s~~~Gf~eRL~~EL~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~r~~s~W~Ggsila~l~~f~~~~Itk~eY~  241 (258)
T d1k8ka2         162 SGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSGGRLKPKPIDVQVITHHMQRYAVWFGGSMLASTPEFYQVCHTKKDYE  241 (258)
T ss_dssp             ESGGGCSTTHHHHHHHHHHHHHHHHHHHHHHHC----CCCCCCCCEECCTTCTTHHHHHHHHHTTSHHHHHHSEEHHHHH
T ss_pred             ecCcccCCCHHHHHHHHHHhhcchhhhhhhhccccccCCCCceeeEecCCCCCceehHHHHHHHcCccHHhheecHHHHh
Confidence            99999999999999999999887654443333333445777788999999999999999999999999999999999999


Q ss_pred             hcCcceeeecCCCCCC
Q 014312          411 EYGASICRSNPVFKGM  426 (427)
Q Consensus       411 e~G~~~~~~~~~~~~~  426 (427)
                      |+|++||++|++|+-|
T Consensus       242 E~G~~iv~~rk~f~~~  257 (258)
T d1k8ka2         242 EIGPSICRHNPVFGVM  257 (258)
T ss_dssp             HHCGGGGGCCCCCSCC
T ss_pred             hhChHHHhcCCCcCCC
Confidence            9999999877779865
>d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1k8ka1 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2fxua1 c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1e4ft2 c.55.1.1 (T:200-390) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Back     information, alignment and structure
>d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Back     information, alignment and structure
>d2fsja1 c.55.1.12 (A:165-325) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d2fsja2 c.55.1.12 (A:1-164) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d2zgya1 c.55.1.1 (A:1-157) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]} Back     information, alignment and structure