Citrus Sinensis ID: 014324

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420------
Protein Sequence
MEKKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEIFLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELLNKRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDPLKQIFWSNVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQGLALPDREPFNTKTASPQDCQELQQKTMPFFADLPSLVDSTLCST
Secondary Structure (PSIPRED)
ccccccccEEEEcccHHHHHHHHHHHHccccEEEEcccccccccccccccccccHHHHHHHHHHcccHHHHHHccccccEEEEEcccccHHHHHHHHHHccccEEEEEHHHHHHHHHHHcccccEEEccEEEEEEEEccEEEEEEEEEEEEEcccEEEEEcEEEEcccccHHHHcccccccccccccEEEEEEEEEccccccHHHHHHHHccccccccEEEEEEccccEEEEEEccccEEEEEEEEEccccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHccccccEEEccccccccccccccEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEEccHHHHHHHHHHHHHccccEEEEEccccHHHcccccccEEccHHHHHHHHHccccHHHHHHHccccccEEEcccccccEEEEcccccccccEEEEEHHHHHHHHHHHccccEEEcccEEEEEEEccccEEEEEEEEEEEEccccEEEEEEEEEcccHHHHHHHHHcccccccEcEEEEEEEEEcHHHcccccccccEEEEcccccccEEEEEccccEEEEEEccccEEEEEEEEcccccccccccccccccHHHHHHHHHHHHccccHHHHHHHHHcccHcHHHHHccccccccccccEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHcccccccHHHcccccccHHHHHHHHHHccccccccccccccccccc
Coil and Loop (DISEMBL)
MEKKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLekaggpptgsptgaglgldrpaQRIIQSWLngrphllhlatvpltidqnqatdnaKVTRTlarddnfnfRAAHWADLHGLlynalppeiflrghQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSIRQSFLsdfklrysgycawrgvldfsgiedSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELLNKRLNWVwyinqpepimkgnsvTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPfinamydcdplkqifWSNVVligdaahpttphglrstnMSILDAMVLGKSLEKWGVEGLLSALEEYqtvrlpvtskqvlhsrrlgrikqglalpdrepfntktaspqdcQELQQktmpffadlpslvdstlcst
Flexible Loop (DISEMBL)
MEKKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTgsptgaglgldRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEIFLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELLNKRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDPLKQIFWSNVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEeyqtvrlpvtskqvlhsrrlgrikqglalpdrepfntkTASPQDCQELQQKTMpffadlpslvdstlcst
Low Complexity Region (SEG)
MEKKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKaggpptgsptgaglglDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEIFLRGHQYLSFCISEvkttvtvkakvLQTDEVIEIKGNLLVAADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELLNKRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDPLKQIFWSNVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQGLALPDREPFNTKTASPQDCQELQQKTMPFFADLPSLVDSTLCST
Disordered region (IsUnstruct)
********AVIVGGSIAGISCAHALLRAGWDVVVLEKA************LGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEIFLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELLNKRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDPLKQIFWSNVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTVRLPVTSKQVLHSRRLGRI***********************************************
Disordered Region (DISOPRED)
*****KG***IVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEIFLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELLNKRLNWVWYINQPEPIMK**S*****SNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDPLKQIFWSNVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQGLALPDREPFNTKT********LQQKTMPFFADLPSLVDST*C**
Disordered Region (DISEMBL)
*********VIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEIFLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELLNKRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDPLKQIFWSNVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQGLALPDREPF**********QELQQKTMPFFADLPSLVDSTLCST
Disordered Region (DISPRO)
****EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEIFLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELLNKRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDPLKQIFWSNVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQGLALPDREPFNTKTASPQDCQELQQKTMPFFADLPSLVD**LC**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEKKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEIFLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELLNKRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDPLKQIFWSNVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQGLALPDREPFNTKTASPQDCQELQQKTMPFFADLPSLVDSTLCST
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	426	2.2.26 [Sep-21-2011]
Q3S4B7	400	3-hydroxybenzoate 6-hydro	yes	no	0.453	0.482	0.278	4e-10
Q9F131	394	3-hydroxybenzoate 6-hydro	N/A	no	0.767	0.829	0.272	4e-10
A6T923	384	FAD-dependent urate hydro	yes	no	0.762	0.846	0.231	2e-09
Q0QFQ1	320	3-hydroxybenzoate 6-hydro	N/A	no	0.549	0.731	0.249	2e-09
B6D1N4	384	FAD-dependent urate hydro	yes	no	0.762	0.846	0.231	4e-09
P86491	385	6-hydroxynicotinate 3-mon	yes	no	0.575	0.636	0.251	6e-09
Q9FGC7	667	Zeaxanthin epoxidase, chl	no	no	0.772	0.493	0.242	8e-09
Q53552	435	Salicylate hydroxylase OS	no	no	0.793	0.777	0.240	3e-08
P23262	434	Salicylate hydroxylase OS	no	no	0.497	0.488	0.265	7e-08
Q5EXK1	397	3-hydroxybenzoate 6-hydro	yes	no	0.575	0.617	0.231	1e-07

>sp|Q3S4B7|3HBH_POLNA 3-hydroxybenzoate 6-hydroxylase OS=Polaromonas naphthalenivorans (strain CJ2) GN=nagX PE=1 SV=1

 Score = 66.2 bits (160), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 102/230 (44%), Gaps = 37/230 (16%)

Query: 159 KGNLLVAADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGK 218
           KG  L+ ADG  S +R+ F+ D   R +G+  +R V+D                  D  +
Sbjct: 157 KGIALIGADGVKSVVREQFVGD-AARVTGHVVYRAVVD----------------KKDFPE 199

Query: 219 CLYFDLAS-----GTHSVFYELLN-KRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHE 272
            L ++ AS       H V Y L   ++ N V   +  +P   G          + +   E
Sbjct: 200 SLQWNAASIWVGPNCHLVHYPLRGGEQYNVVVTFHSRQPEQWG----------VTEGSKE 249

Query: 273 EAEKVW---LPEFVKVIKETKEPFINAMYDCDPLKQIFWSNVVLIGDAAHPTTPHGLRST 329
           E +  +    P+  ++I   K     A  D +P+ Q  +  V L+GDAAHPTT +  +  
Sbjct: 250 EVQSYFQGICPQARQLIDLPKTWKRWATADREPIGQWSFGRVTLLGDAAHPTTQYMAQGA 309

Query: 330 NMSILDAMVLGKSLEKWGVEGLLSALEEYQTVRLPVTSKQVLHSRRLGRI 379
            M++ D + LG++L +        A E YQ  R+  T++ VL SR +GRI
Sbjct: 310 CMAMEDGVTLGEAL-RVNNNDFPKAFELYQRSRVARTARIVLSSREMGRI 358

Catalyzes the NAD- or NADP-dependent conversion of 3-hydroxybenzoate to gentisate. The affinity of the enzyme toward NAD is twice as high as for NADP.
Polaromonas naphthalenivorans (strain CJ2) (taxid: 365044)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 3EC: .EC: 2EC: 4

>sp|Q9F131|3HBH1_PSEAC 3-hydroxybenzoate 6-hydroxylase 1 OS=Pseudomonas alcaligenes GN=xlnD PE=1 SV=1

 Score = 66.2 bits (160), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 104/381 (27%), Positives = 146/381 (38%), Gaps = 54/381 (14%)

Query: 10  VIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRP 69
           +I G  I G+S A  L R G   +VLEKA   P     GAG+ L   A   + +   G  
Sbjct: 6   LIAGAGIGGLSAALGLARKGMRSIVLEKA---PELGEIGAGIQLAPNAYHALDALGIGEV 62

Query: 70  HLLHLATVPLTIDQNQATDNAKVTRTLA-RDDNF---NFRAAHWADLHGLLYNALPPEIF 125
                  V   +  +  TD    +  LA R   F    +   H AD HGLL  A      
Sbjct: 63  ARQTGVHVDKLLWMDGMTDKEIASVPLANRFREFFGNPYAVIHRADFHGLLVEAC----- 117

Query: 126 LRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEI-------KGNLLVAADGCLSSIRQSFL 178
              H+     + EV+T   V       D V  I        G +LV ADG  S++RQ  +
Sbjct: 118 ---HKT---GLVEVRTNAEVVDYENFPDRVEAILHDGSCINGAVLVGADGLWSNVRQKVI 171

Query: 179 SDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELL-N 237
            D   R SG+  +R V+    + + E+   M   +             G H V Y L   
Sbjct: 172 GDGDPRVSGHTTYRSVIPAEDMPE-ELRWNMSTAWA----------GEGCHMVHYPLKGG 220

Query: 238 KRLNWVWYIN----QPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPF 293
           K  N V   N    +PE    G  VT     +  K M              +I +     
Sbjct: 221 KVFNLVLTSNSGASEPE---AGVPVTTDEVFEKFKTMKRRP--------TSLIHKGNNWK 269

Query: 294 INAMYDCDPLKQIFWSNVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLS 353
              + D DPL       V L+GDAAHP   +  +  +M+I DA+ L   L +      +S
Sbjct: 270 RWVLCDRDPLPNWVDGRVTLLGDAAHPMMQYMAQGASMAIEDAVCLAFELGR--EMDPVS 327

Query: 354 ALEEYQTVRLPVTSKQVLHSR 374
           AL++Y   R   T++   +SR
Sbjct: 328 ALKKYNRARFARTARVQTYSR 348

Catalyzes the NAD- or NADP-dependent conversion of 3-hydroxybenzoate to gentisate. The affinity of the enzyme toward NAD is twice as high as for NADP. The enzyme shows higher specific activities against the intermediates in the degradation of 2,5-xylenol and 3,5-xylenol, 3-hydroxy-4-methylbenzoate and 3-hydroxy-5-methylbenzoate, respectively, than for 3-hydroxybenzoate. It also shows activity against 3-substituted benzoates.

Pseudomonas alcaligenes (taxid: 43263)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 2

EC: 4

>sp|A6T923|HPXO_KLEP7 FAD-dependent urate hydroxylase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=hpxO PE=1 SV=1

 Score = 63.9 bits (154), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 92/398 (23%), Positives = 149/398 (37%), Gaps = 73/398 (18%)

Query: 8   KAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNG 67
           KA+++G  I G+S A AL ++G D  V E         P GA           I  W NG
Sbjct: 2   KAIVIGAGIGGLSAAVALKQSGIDCDVYEAV---KEIKPVGAA----------ISVWPNG 48

Query: 68  RPHLLHLATVPLTIDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEIFLR 127
              + HL      +     T    + R   RD    FR+        +   +L P I   
Sbjct: 49  VKCMAHLG-----MGDIMETFGGPLRRMAYRD----FRSGE-----NMTQFSLAPLIERT 94

Query: 128 GHQYLSFCISEV---------KTTVTVKAKVLQTDEVIE-----------IKGNLLVAAD 167
           G +      +E+         + +V    +V + +E  +             G+LL+AAD
Sbjct: 95  GSRPCPVSRAELQREMLDYWGRDSVQFGKRVTRCEEDADGVTVWFTDGSSASGDLLIAAD 154

Query: 168 GCLSSIRQSFLS-DFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLAS 226
           G  S++R   L    + RY+GY  W G+     +E  E +    +    +G+     L  
Sbjct: 155 GSHSALRPWVLGFTPQRRYAGYVNWNGL-----VEIDEALAPGDQWTTFVGEGKRVSLMP 209

Query: 227 GTHSVFYELLNKRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVI 286
            +   FY          ++ + P P        +    D ++         W P   K+I
Sbjct: 210 VSAGRFY----------FFFDVPLP------AGLAEDRDTLRADLSRYFAGWAPPVQKLI 253

Query: 287 KETKEPFIN--AMYDCDPLKQIFWSNVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLE 344
                   N   ++D +P  ++    V L+GDA H TTP   +    ++ DA+VLG    
Sbjct: 254 AALDPQTTNRIEIHDIEPFSRLVRGRVALLGDAGHSTTPDIGQGGCAAMEDAVVLGAVFR 313

Query: 345 KWGVEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQG 382
           +     + +AL EY+  R       VL +R+   I  G
Sbjct: 314 Q--TRDIAAALREYEAQRCDRVRDLVLKARKRCDITHG 349

Catalyzes the hydroxylation of uric acid to 5-hydroxyisourate.

Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) (taxid: 272620)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 1

EC: 3

>sp|Q0QFQ1|3HBH2_PSEAC 3-hydroxybenzoate 6-hydroxylase 2 OS=Pseudomonas alcaligenes GN=hbzD PE=2 SV=1

 Score = 63.9 bits (154), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 120/285 (42%), Gaps = 51/285 (17%)

Query: 118 NALPPEIFLRGHQYLSFCIS-------EVKTTVTVKAKVLQTDEVI-------EIKGNLL 163
           +A P + F R   +LS           E KT   V+      D V          +G  L
Sbjct: 21  SATPTQSFHRVDAHLSLLEGAEETGWVEFKTNTRVERIEQDADSVTVYDQNGNAYRGVAL 80

Query: 164 VAADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLG---KC- 219
           + ADG  S +RQ++++D + R +G+  +R V+D       E  + +R     L    KC 
Sbjct: 81  IGADGVRSVVRQTYVND-QPRVTGHVVYRAVVD-----KDEFPQDLRWNASSLWVGPKCH 134

Query: 220 -LYFDLASGTHSVFYELLNKRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVW 278
            +++ L  G           R    W + +              S + +++  ++     
Sbjct: 135 LVHYPLRGGEQYNIVVTFQSRQQEEWGVTEG-------------SKEEVESYFQDI---- 177

Query: 279 LPEFVKVIKETKEPFINAMYDCDPLKQIFWSNVVLIGDAAHPTTPHGLRSTNMSILDAMV 338
            P+  ++I   K     A  D +P+ Q  +    L+GDAAHPTT +  +   M++ DA+ 
Sbjct: 178 CPKARQLIGLPKSWKRWATADREPIPQWTFGRTTLLGDAAHPTTQYMAQGACMALEDAVT 237

Query: 339 LGKSLE----KWGVEGLLSALEEYQTVRLPVTSKQVLHSRRLGRI 379
           LG++L      WG      AL+ YQ  R+  T++ VL  R +GR+
Sbjct: 238 LGEALRVHGNDWG-----KALDLYQRSRITRTARIVLSGREMGRL 277

Catalyzes the conversion of 3-hydroxybenzoate to gentisate.

Pseudomonas alcaligenes (taxid: 43263)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 2

EC: 4

>sp|B6D1N4|HPXO_KLEPN FAD-dependent urate hydroxylase OS=Klebsiella pneumoniae GN=hpxO PE=3 SV=1

 Score = 63.2 bits (152), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 92/398 (23%), Positives = 149/398 (37%), Gaps = 73/398 (18%)

Query: 8   KAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNG 67
           KA+++G  I G+S A AL ++G D  V E         P GA           I  W NG
Sbjct: 2   KAIVIGAGIGGLSAAVALKQSGIDCDVYEAV---KEIKPVGAA----------ISVWPNG 48

Query: 68  RPHLLHLATVPLTIDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEIFLR 127
              + HL      +     T    + R   RD    FR+        +   +L P I   
Sbjct: 49  VKCMAHLG-----MGDIMETFGGPLRRMAYRD----FRSGE-----NMTQFSLAPLIERT 94

Query: 128 GHQYLSFCISEV---------KTTVTVKAKVLQTDEVIE-----------IKGNLLVAAD 167
           G +      +E+         + +V    +V + +E  +             G+LL+AAD
Sbjct: 95  GSRPCPVSRAELQREMLDYWGRDSVQFGKRVTRCEEDADGVTVWFTDGSSASGDLLIAAD 154

Query: 168 GCLSSIRQSFLS-DFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLAS 226
           G  S++R   L    + RY+GY  W G+     +E  E +    +    +G+     L  
Sbjct: 155 GSHSALRPWVLGFTPQRRYAGYVNWNGL-----VEIDEALAPGDQWTTFVGEGKRVSLMP 209

Query: 227 GTHSVFYELLNKRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVI 286
            +   FY          ++ + P P        +    D ++         W P   K+I
Sbjct: 210 VSAGRFY----------FFFDVPLP------AGLAEDRDTLRADLSRYFAGWAPPVQKLI 253

Query: 287 KETKEPFIN--AMYDCDPLKQIFWSNVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLE 344
                   N   ++D +P  ++    V L+GDA H TTP   +    ++ DA+VLG    
Sbjct: 254 AALDPQTTNRIEIHDIEPFSRLVRGRVALLGDAGHSTTPDIGQGGCAAMEDAVVLGAVFR 313

Query: 345 KWGVEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQG 382
           +     + +AL EY+  R       VL +R+   I  G
Sbjct: 314 Q--TRDIAAALCEYEAQRCDRVRDLVLKARKRCDITHG 349

Catalyzes the hydroxylation of uric acid to 5-hydroxyisourate.

Klebsiella pneumoniae (taxid: 573)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 1

EC: 3

>sp|P86491|6HN3M_PSEFL 6-hydroxynicotinate 3-monooxygenase OS=Pseudomonas fluorescens PE=1 SV=1

 Score = 62.4 bits (150), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 67/266 (25%), Positives = 106/266 (39%), Gaps = 21/266 (7%)

Query: 103 NFRAAHWADLHGLLYNALPPEIFLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNL 162
           ++   H  D H LL  ALP  +   G ++L+    E +  V V      T E    + ++
Sbjct: 102 SYLTVHRGDFHALLVEALPDSVMAYG-KFLTKV--EDRGNVVVMHFADGTTE----EADI 154

Query: 163 LVAADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYF 222
           ++  DG  S IR+  L     +Y+GY A R V         E+  GM         C+ +
Sbjct: 155 VIGPDGVNSRIREELLGPELPKYAGYLAHRAVF-----PTPEVKAGML----PFDACVKW 205

Query: 223 DLASGTHSVFYELLNKRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEF 282
             +   H + Y +  K     +    P      N   +  S + ++    EA   W P  
Sbjct: 206 -WSDDRHMMTYFVTGKADELYYVTGVPVEKWDLNDRWLESSKEEMR----EAFSGWHPTV 260

Query: 283 VKVIKETKEPFINAMYDCDPLKQIFWSNVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKS 342
             +I  T E    ++ + DPL       +VL+GDA HP  PH  +   M+I D  +L + 
Sbjct: 261 QALIDATVEVTKWSLLERDPLPLWSRGRLVLLGDACHPMKPHMAQGAAMAIEDGAMLARC 320

Query: 343 LEKWGVEGLLSALEEYQTVRLPVTSK 368
           L++ G      A   Y+  R    SK
Sbjct: 321 LKEVGAHNHELAFALYEANRAERASK 346

Catalyzes the oxidative decarboxylation of 6-hydroxynicotinic acid to 2,5-dihydroxypyridine. Uses NADH in preference to NADPH as an electron donor.

Pseudomonas fluorescens (taxid: 294)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 1

EC: 1

EC: 4

>sp|Q9FGC7|ZEP_ARATH Zeaxanthin epoxidase, chloroplastic OS=Arabidopsis thaliana GN=ZEP PE=1 SV=1

 Score = 62.0 bits (149), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 97/400 (24%), Positives = 154/400 (38%), Gaps = 71/400 (17%)

Query: 2   EKKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAG----------- 50
           EKK+K + ++ GG I G+  A A  + G+DV+V EK      G     G           
Sbjct: 76  EKKKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDLSAIRGEGKYRGPIQIQSNALAA 135

Query: 51  -LGLD-RPAQRIIQSWLNGRPHLLHLAT-------VPLTIDQNQATDNAKVTRTLARDDN 101
              +D   A++++++       +  L         V        A+    VTR ++R   
Sbjct: 136 LEAIDIEVAEQVMEAGCITGDRINGLVDGISGTWYVKFDTFTPAASRGLPVTRVISR--- 192

Query: 102 FNFRAAHWADLHGLLYNALPPEIFLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGN 161
                     L  +L  A+  ++       + F  S  K TV     VL+  +  E  G+
Sbjct: 193 --------MTLQQILARAVGEDVIRNESNVVDFEDSGDKVTV-----VLENGQRYE--GD 237

Query: 162 LLVAADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLY 221
           LLV ADG  S +R +     +  YSGY  + G+ DF     ++I     RV+  LG   Y
Sbjct: 238 LLVGADGIWSKVRNNLFGRSEATYSGYTCYTGIADFI---PADIESVGYRVF--LGHKQY 292

Query: 222 F---DLASGTHSVFYELLNKRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVW 278
           F   D+  G                WY    EP    ++      N M K + E  +  W
Sbjct: 293 FVSSDVGGGKMQ-------------WYAFHEEPAGGADA-----PNGMKKRLFEIFDG-W 333

Query: 279 LPEFVKVIKETKEPFI--NAMYDCDPLKQIFWSNVVLIGDAAHPTTPHGLRSTNMSILDA 336
               + ++  T+E  I    +YD  P        V L+GD+ H   P+  +   M+I D+
Sbjct: 334 CDNVLDLLHATEEEAILRRDIYDRSPGFTWGKGRVTLLGDSIHAMQPNMGQGGCMAIEDS 393

Query: 337 MVLGKSLEKWGVEGLLSALEEYQTVRLPVTSKQVLHSRRL 376
             L   L+    E    ++E    V +  + K+   SRRL
Sbjct: 394 FQLALELD----EAWKQSVETTTPVDVVSSLKRYEESRRL 429

Zeaxanthin epoxidase that plays an important role in the xanthophyll cycle and abscisic acid (ABA) biosynthesis. Converts zeaxanthin into antheraxanthin and subsequently violaxanthin. Required for resistance to osmotic and drought stresses, ABA-dependent stomatal closure, seed development and dormancy, modulation of defense gene expression and disease resistance and non-photochemical quencing (NPQ). Through its role in ABA biosynthesis, regulates the expression of stress-responsive genes such as RD29A during osmotic stress and is required for normal plant growth during vegetative development. Is required for late skotomorphogenic growth through its role in the xanthophyll carotenoids neoxanthin, violaxanthin and antheraxanthin biosynthesis. Required for beta-aminobutyric acid (BABA)-induced priming in disease resistance, tolerance to salt and drought stresses and sterility. Participates in NPQ by regulating the level of zeaxanthin in photosynthetic energy conversion. NPQ is a process that maintains the balance between dissipation and utilization of light energy to minimize the generation of oxidizing molecules and the molecular damages they can generate.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 9

EC: 0

>sp|Q53552|NHG2_PSEPU Salicylate hydroxylase OS=Pseudomonas putida GN=nahG PE=4 SV=1

 Score = 60.5 bits (145), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 92/383 (24%), Positives = 154/383 (40%), Gaps = 45/383 (11%)

Query: 3   KKEKGKAVIVGGSIAGISCAHALLR-AGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRII 61
           KK   +  IVGG I+G++ A +L + +  +V + E A   P     GAG+     A R I
Sbjct: 7   KKPALRVAIVGGGISGLALALSLCKHSHLNVQLFEAA---PAFGEVGAGVSFGPNAVRAI 63

Query: 62  QSWLNGRPHLLHLATVP-----LTIDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLL 116
                G+ +       P     +  +  + +D + +  T+A        + H AD    L
Sbjct: 64  VGLGLGQAYFQVADRTPQPWEDIWFEWRRGSDASYLGATIA---GVGQSSVHRADFLDAL 120

Query: 117 YNALPPEIFLRGHQYLSFCISEVKTTVTVKAKVLQT--DEVIEIKGNLLVAADGCLSSIR 174
              LP  I             +  T +  +   LQ    +  E + +LL+  DG  S++R
Sbjct: 121 VKHLPEGIAQ---------FRKRATQIEQQGDELQVLFRDGTEYRCDLLIGRDGIKSALR 171

Query: 175 QSFLSD-----FKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTH 229
              L        + R+SG CA+RG++D   + ++  I G+     D+ + +Y  L    H
Sbjct: 172 SYVLEGQGQDHLEPRFSGTCAYRGMVDSLQLREAYRINGIDEHLVDVPQ-MYLGLYG--H 228

Query: 230 SVFYELLNKRL-NWVWYIN---QPEPIMKGNSVTMRVSN--DMIKNMHEEAEKVWLPEFV 283
            + + +   R+ N V + +   QPEP    ++  +R ++  +M+       +   L E +
Sbjct: 229 ILTFPVRKGRIVNVVAFTSDRSQPEPTWPADAPWVREASQREMLDAFAGWGDARALLECI 288

Query: 284 KVIKETKEPFINAMYDCDPLKQIFWSNVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSL 343
                   P + A++D   L       V LIGDAAH   PH        + DA  L + L
Sbjct: 289 PA------PTLWALHDLPELPGYVHGRVALIGDAAHAMLPHQGAGAGQGLEDAYFLARLL 342

Query: 344 EKWGVE--GLLSALEEYQTVRLP 364
                E   L   L  Y  +R P
Sbjct: 343 GDSRTETGNLPELLGAYDDLRRP 365

Pseudomonas putida (taxid: 303)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 1

>sp|P23262|NHG1_PSEPU Salicylate hydroxylase OS=Pseudomonas putida GN=nahG PE=1 SV=4

 Score = 58.9 bits (141), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 104/230 (45%), Gaps = 18/230 (7%)

Query: 146 KAKVLQTDEVIEIKGNLLVAADGCLSSIRQSFLSDFKL-----RYSGYCAWRGVLDFSGI 200
           + +VL TD   E + +LL+ ADG  S++R   L    L     R+SG CA+RG++D   +
Sbjct: 142 EVQVLFTDGT-EYRCDLLIGADGIKSALRSHVLEGQGLAPQVPRFSGTCAYRGMVDSLHL 200

Query: 201 EDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELLNKRL-NWVWYIN---QPEPIMKGN 256
            ++    G+     D+ + +Y  L    H + + + N  + N V +I+   +P+P    +
Sbjct: 201 REAYRAHGIDEHLVDVPQ-MYLGLDG--HILTFPVRNGGIINVVAFISDRSEPKPTWPAD 257

Query: 257 SVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDPLKQIFWSNVVLIGD 316
           +  +R ++   +    +A   W      +++    P + A++D   L       VVLIGD
Sbjct: 258 APWVREAS---QREMLDAFAGWGDAARALLECIPAPTLWALHDLAELPGYVHGRVVLIGD 314

Query: 317 AAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEG--LLSALEEYQTVRLP 364
           AAH   PH        + DA  L + L     +   L   LE Y  +R P
Sbjct: 315 AAHAMLPHQGAGAGQGLEDAYFLARLLGDTQADAGNLAELLEAYDDLRRP 364

Pseudomonas putida (taxid: 303)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 1

>sp|Q5EXK1|3HBH_KLEOX 3-hydroxybenzoate 6-hydroxylase OS=Klebsiella oxytoca GN=mhbM PE=1 SV=1

 Score = 58.5 bits (140), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 68/294 (23%), Positives = 123/294 (41%), Gaps = 49/294 (16%)

Query: 100 DNFN--FRAAHWADLHGLLYNALPPEIFLRGHQYLSFCISEVKTTVTVKAKVLQTDE--- 154
           D+F   +   H  D+H  ++ A            L+    E +T+  V   + QT +   
Sbjct: 97  DHFGGPYAVIHRVDIHATVWEAA-----------LTHPAVEYRTSTQV-VDIRQTADDVT 144

Query: 155 VIEIKGN-----LLVAADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGM 209
           V + KGN     +L+  DG  S +RQS L D   R +G+  +R V+D + + D   I   
Sbjct: 145 VFDDKGNSWTADILIGCDGGKSVVRQSLLGD-SPRVTGHVVYRAVVDAADMPDDLRINAP 203

Query: 210 RRVYPDLGKCLYFDLASGTHSVFYELLNKRLNWVWYI--NQPEPIMKGNSVTMRVSNDMI 267
                     +++ L  G         + R    W +     E ++              
Sbjct: 204 VLWAGPHCHLVHYPLRGGKQYNLVVTFHSRQQEEWGVRDGSKEEVLS-----------YF 252

Query: 268 KNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDPLKQIFWSN--VVLIGDAAHPTTPHG 325
           K +H        P   +++ +       +  D +P+++  W N  + L+GDAAHP   + 
Sbjct: 253 KGIH--------PRPRQMLDKPTSWRRWSTADREPVEK--WGNDRITLVGDAAHPVAQYM 302

Query: 326 LRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTVRLPVTSKQVLHSRRLGRI 379
            +   M++ DA+ LGK+L +   +    A   Y++VR+P T++ V  +R +GR+
Sbjct: 303 AQGACMALEDAVTLGKALAQCDGDA-ARAFALYESVRIPRTARIVWSTREMGRV 355

Catalyzes the NAD- or NADP-dependent conversion of 3-hydroxybenzoate to gentisate. NAD and NADP function equally well.

Klebsiella oxytoca (taxid: 571)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: 2

EC: 4

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	426
225430163	424	PREDICTED: 6-hydroxynicotinate 3-monooxy	0.983	0.988	0.735	0.0
224143077	420	predicted protein [Populus trichocarpa]	0.983	0.997	0.733	0.0
255546593	447	monoxygenase, putative [Ricinus communis	0.981	0.935	0.735	0.0
296081969	410	unnamed protein product [Vitis vinifera]	0.936	0.973	0.74	1e-175
357436855	428	3-hydroxybenzoate 6-hydroxylase [Medicag	0.964	0.960	0.703	1e-174
388497176	428	unknown [Medicago truncatula]	0.964	0.960	0.701	1e-173
449442198	433	PREDICTED: 6-hydroxynicotinate 3-monooxy	0.971	0.956	0.690	1e-172
255546595	420	monoxygenase, putative [Ricinus communis	0.978	0.992	0.686	1e-171
356563844	436	PREDICTED: 6-hydroxynicotinate 3-monooxy	0.962	0.940	0.716	1e-170
297811247	406	monooxygenase family protein [Arabidopsi	0.941	0.987	0.640	1e-157

>gi|225430163|ref|XP_002282242.1| PREDICTED: 6-hydroxynicotinate 3-monooxygenase [Vitis vinifera]

 Score =  649 bits (1674), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 309/420 (73%), Positives = 356/420 (84%), Gaps = 1/420 (0%)

Query: 2   EKKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRII 61
           EK+ K KA+IVGGSIAG+SCAHAL  AGW+VVVLEK   PPTGSPTGAGLGLD  AQR+I
Sbjct: 6   EKQPKPKAIIVGGSIAGVSCAHALTLAGWNVVVLEKTCAPPTGSPTGAGLGLDPLAQRLI 65

Query: 62  QSWLNGRPHLLHLATVPLTIDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALP 121
           +SW+ G P  L  ATVPLTIDQNQA D  K+  TL RD+N NFRAAHWADL GLLYNAL 
Sbjct: 66  ESWV-GDPDSLRKATVPLTIDQNQAIDGKKIRGTLTRDENLNFRAAHWADLDGLLYNALA 124

Query: 122 PEIFLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSIRQSFLSDF 181
            ++FL GH +LSF IS+ K+ V VK+KVL+T E+IE  G+LLVAADGCLS+IR+ FL D 
Sbjct: 125 EDVFLWGHLFLSFSISDDKSCVKVKSKVLETGEIIETVGDLLVAADGCLSAIREHFLPDL 184

Query: 182 KLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELLNKRLN 241
           +LRYSGYCAWRGVLDFS  E+SE I+GMRR YPDLGKCLYFDL SGTHS  YELLNKR+N
Sbjct: 185 QLRYSGYCAWRGVLDFSENENSETIQGMRRAYPDLGKCLYFDLGSGTHSGIYELLNKRIN 244

Query: 242 WVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCD 301
           W+WY+NQP+P MKG SVTM+VS+DMI+ MH+EAE  W PE V+V+KETKEPF+NA+YDCD
Sbjct: 245 WLWYVNQPQPEMKGKSVTMKVSSDMIEKMHQEAEMAWAPELVRVMKETKEPFLNAIYDCD 304

Query: 302 PLKQIFWSNVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTV 361
           PL+QIFW NVVLIGDAAHPTTPHGLRSTNMS+LDA VLGK LEKWGVE L SALEEYQ+ 
Sbjct: 305 PLEQIFWDNVVLIGDAAHPTTPHGLRSTNMSVLDAAVLGKCLEKWGVENLSSALEEYQST 364

Query: 362 RLPVTSKQVLHSRRLGRIKQGLALPDREPFNTKTASPQDCQELQQKTMPFFADLPSLVDS 421
           RLPVTSKQVLH+RRLGR+KQGL L DR+PF+ KTAS +DC+ELQQK MPFFAD+P  ++S
Sbjct: 365 RLPVTSKQVLHARRLGRLKQGLILADRKPFDPKTASLEDCEELQQKNMPFFADIPLPLNS 424

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224143077|ref|XP_002324842.1| predicted protein [Populus trichocarpa] gi|222866276|gb|EEF03407.1| predicted protein [Populus trichocarpa]

 Score =  648 bits (1671), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 309/421 (73%), Positives = 360/421 (85%), Gaps = 2/421 (0%)

Query: 1   MEKKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRI 60
           M +K+K KAVIVGGSIAG+SCAHAL+ AGWDVVVLEK+  PP GSPTGAGL LDR A  I
Sbjct: 1   MGEKKKAKAVIVGGSIAGVSCAHALISAGWDVVVLEKSSQPPKGSPTGAGLALDRQAFNI 60

Query: 61  IQSWLNGRPHLLHLATVPLTIDQNQATDNAK-VTRTLARDDNFNFRAAHWADLHGLLYNA 119
           I+SWL  +P LL   T+PLTIDQNQ  D  K V+R L RD++FNFRAAHWADLHGLLYNA
Sbjct: 61  IESWLP-QPQLLQQTTLPLTIDQNQTADGEKEVSRILTRDEDFNFRAAHWADLHGLLYNA 119

Query: 120 LPPEIFLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSIRQSFLS 179
           LP E+FL GH YLSF  SE KT+VTV+AKVLQT+E+IEI G+LLVAADGCLS IR++FL 
Sbjct: 120 LPAEVFLWGHLYLSFRTSEDKTSVTVEAKVLQTEEIIEINGDLLVAADGCLSLIRKTFLP 179

Query: 180 DFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELLNKR 239
           D KLRYSGYCAWRGVLDFSG E+SE I  ++RVYPDLGKCLYFDL +G+H+V YELL+KR
Sbjct: 180 DLKLRYSGYCAWRGVLDFSGNENSETIMSIQRVYPDLGKCLYFDLNTGSHTVLYELLSKR 239

Query: 240 LNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYD 299
           LNW+WY++QPEP  KG SVTM+VS+DMI+NM++EAEK W PE V+V++ETKEPFIN +YD
Sbjct: 240 LNWIWYVHQPEPEQKGYSVTMKVSSDMIENMYQEAEKAWGPELVRVMRETKEPFINIIYD 299

Query: 300 CDPLKQIFWSNVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQ 359
           CDPL++IF  NVVLIGDAAHPTTPHG+RSTNMSILDA VLGK +EKWG E + SALEEYQ
Sbjct: 300 CDPLERIFLDNVVLIGDAAHPTTPHGVRSTNMSILDAAVLGKCIEKWGAENIPSALEEYQ 359

Query: 360 TVRLPVTSKQVLHSRRLGRIKQGLALPDREPFNTKTASPQDCQELQQKTMPFFADLPSLV 419
            +RLPVTSKQVLHSRR+GRIKQGLAL DR+PF+ KTAS ++C+ELQQK MPFFA +P  V
Sbjct: 360 RIRLPVTSKQVLHSRRMGRIKQGLALLDRKPFDPKTASAEECEELQQKNMPFFATVPLSV 419

Query: 420 D 420
           D
Sbjct: 420 D 420

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255546593|ref|XP_002514356.1| monoxygenase, putative [Ricinus communis] gi|223546812|gb|EEF48310.1| monoxygenase, putative [Ricinus communis]

 Score =  644 bits (1660), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 308/419 (73%), Positives = 353/419 (84%), Gaps = 1/419 (0%)

Query: 2   EKKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRII 61
           + K K KA+IVGGSIAGISCAHAL+ AGW+ VVLEK+  PP GSPTGAG+G+D  +Q+II
Sbjct: 4   KNKNKPKAIIVGGSIAGISCAHALILAGWNAVVLEKSNSPPKGSPTGAGIGIDLLSQQII 63

Query: 62  QSWLNGRPHLLHLATVPLTIDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALP 121
           +SWL   PHLLH  T PL+IDQN  TD  K TR L RD+NFNFRAAHWADLHGLLY+ LP
Sbjct: 64  KSWL-ANPHLLHELTFPLSIDQNIVTDGDKATRILTRDENFNFRAAHWADLHGLLYSDLP 122

Query: 122 PEIFLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSIRQSFLSDF 181
           PEIFL GH  LSF +SE KT+V VKAK LQTDE+IEIKG+LLVAADGCLSSIR++FL D 
Sbjct: 123 PEIFLWGHLCLSFNVSEDKTSVNVKAKALQTDEIIEIKGDLLVAADGCLSSIRRTFLPDL 182

Query: 182 KLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELLNKRLN 241
           KLRYSGYCAWRGVLDFSG E SE I G+R+VYPDLG CLYF L  G HSV YEL  ++LN
Sbjct: 183 KLRYSGYCAWRGVLDFSGKEGSETIVGIRKVYPDLGNCLYFHLNGGIHSVLYELPKEKLN 242

Query: 242 WVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCD 301
           W+WY++QPEP +KG+SVTM+VS+D+I NM++EAEKVW  EFVKV+K+TKEPF+N MYDCD
Sbjct: 243 WIWYVHQPEPKVKGSSVTMKVSSDVINNMYQEAEKVWPHEFVKVMKDTKEPFLNIMYDCD 302

Query: 302 PLKQIFWSNVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTV 361
           PL+QI W  VVLIGDAAHPTTPHGLRSTNMSI+DA VLGK LEKWGVE L SALEEYQ +
Sbjct: 303 PLEQIVWDRVVLIGDAAHPTTPHGLRSTNMSIVDAAVLGKRLEKWGVENLPSALEEYQGL 362

Query: 362 RLPVTSKQVLHSRRLGRIKQGLALPDREPFNTKTASPQDCQELQQKTMPFFADLPSLVD 420
           RLPVTSKQVLHSRR+GRIKQGL+L DRE F+ KTA+P DC+ LQQK MPFFA +P LVD
Sbjct: 363 RLPVTSKQVLHSRRMGRIKQGLSLTDRETFDPKTATPDDCEGLQQKHMPFFAGVPGLVD 421

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296081969|emb|CBI20974.3| unnamed protein product [Vitis vinifera]

 Score =  621 bits (1601), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 296/400 (74%), Positives = 339/400 (84%), Gaps = 1/400 (0%)

Query: 2   EKKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRII 61
           EK+ K KA+IVGGSIAG+SCAHAL  AGW+VVVLEK   PPTGSPTGAGLGLD  AQR+I
Sbjct: 6   EKQPKPKAIIVGGSIAGVSCAHALTLAGWNVVVLEKTCAPPTGSPTGAGLGLDPLAQRLI 65

Query: 62  QSWLNGRPHLLHLATVPLTIDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALP 121
           +SW+ G P  L  ATVPLTIDQNQA D  K+  TL RD+N NFRAAHWADL GLLYNAL 
Sbjct: 66  ESWV-GDPDSLRKATVPLTIDQNQAIDGKKIRGTLTRDENLNFRAAHWADLDGLLYNALA 124

Query: 122 PEIFLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSIRQSFLSDF 181
            ++FL GH +LSF IS+ K+ V VK+KVL+T E+IE  G+LLVAADGCLS+IR+ FL D 
Sbjct: 125 EDVFLWGHLFLSFSISDDKSCVKVKSKVLETGEIIETVGDLLVAADGCLSAIREHFLPDL 184

Query: 182 KLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELLNKRLN 241
           +LRYSGYCAWRGVLDFS  E+SE I+GMRR YPDLGKCLYFDL SGTHS  YELLNKR+N
Sbjct: 185 QLRYSGYCAWRGVLDFSENENSETIQGMRRAYPDLGKCLYFDLGSGTHSGIYELLNKRIN 244

Query: 242 WVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCD 301
           W+WY+NQP+P MKG SVTM+VS+DMI+ MH+EAE  W PE V+V+KETKEPF+NA+YDCD
Sbjct: 245 WLWYVNQPQPEMKGKSVTMKVSSDMIEKMHQEAEMAWAPELVRVMKETKEPFLNAIYDCD 304

Query: 302 PLKQIFWSNVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTV 361
           PL+QIFW NVVLIGDAAHPTTPHGLRSTNMS+LDA VLGK LEKWGVE L SALEEYQ+ 
Sbjct: 305 PLEQIFWDNVVLIGDAAHPTTPHGLRSTNMSVLDAAVLGKCLEKWGVENLSSALEEYQST 364

Query: 362 RLPVTSKQVLHSRRLGRIKQGLALPDREPFNTKTASPQDC 401
           RLPVTSKQVLH+RRLGR+KQGL L DR+PF+ KTAS +DC
Sbjct: 365 RLPVTSKQVLHARRLGRLKQGLILADRKPFDPKTASLEDC 404

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357436855|ref|XP_003588703.1| 3-hydroxybenzoate 6-hydroxylase [Medicago truncatula] gi|355477751|gb|AES58954.1| 3-hydroxybenzoate 6-hydroxylase [Medicago truncatula]

 Score =  616 bits (1588), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 290/412 (70%), Positives = 342/412 (83%), Gaps = 1/412 (0%)

Query: 6   KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWL 65
           K KAVIVGGSI GIS AHAL+ AGWDV+VLEK   PPTGSPTGAGLGL+  +Q+IIQSW+
Sbjct: 7   KPKAVIVGGSIGGISSAHALILAGWDVLVLEKTTSPPTGSPTGAGLGLNSLSQQIIQSWI 66

Query: 66  NGRPHLLHLATVPLTIDQNQATDN-AKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI 124
           +  P  LH  T PLTIDQN  TD+  KV RTL RD++ NFRAAHW DLHG+LY +LPP+I
Sbjct: 67  SKPPQFLHNTTHPLTIDQNLVTDSEKKVNRTLTRDESLNFRAAHWGDLHGVLYESLPPQI 126

Query: 125 FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSIRQSFLSDFKLR 184
           FL GH +LSF ++  K  V VKAKV++T EVIEI G+LLVAADGCLSSIR+ +L DFKLR
Sbjct: 127 FLWGHIFLSFHVANEKGPVIVKAKVVKTGEVIEIVGDLLVAADGCLSSIRRKYLPDFKLR 186

Query: 185 YSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELLNKRLNWVW 244
           YSGYCAWRGVLDFS IE+SE IKG+++ YPDLGKCLYFDLASGTHSV YEL NK+LNW+W
Sbjct: 187 YSGYCAWRGVLDFSEIENSETIKGIKKAYPDLGKCLYFDLASGTHSVLYELPNKKLNWIW 246

Query: 245 YINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDPLK 304
           Y+NQPEP +KG SVT +V++DMI+ MH+EAEK+W+PE  KV+KETKEPF+N +YD DPL+
Sbjct: 247 YVNQPEPEVKGTSVTTKVTSDMIQKMHQEAEKIWIPELAKVMKETKEPFLNFIYDSDPLE 306

Query: 305 QIFWSNVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTVRLP 364
           +IFW NVVL+G+AAHPTTPH LRSTNM+ILDA VLGK +EKWG E L SALEEYQ  RLP
Sbjct: 307 KIFWDNVVLVGEAAHPTTPHYLRSTNMTILDAAVLGKCIEKWGTEMLESALEEYQLTRLP 366

Query: 365 VTSKQVLHSRRLGRIKQGLALPDREPFNTKTASPQDCQELQQKTMPFFADLP 416
           VTSKQVLH+RRLGRIKQGL LPDR+PF+ K+A  ++CQE+     PFF D P
Sbjct: 367 VTSKQVLHARRLGRIKQGLVLPDRDPFDPKSARQEECQEIILTNTPFFNDAP 418

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388497176|gb|AFK36654.1| unknown [Medicago truncatula]

 Score =  613 bits (1581), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 289/412 (70%), Positives = 341/412 (82%), Gaps = 1/412 (0%)

Query: 6   KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWL 65
           K KAVIVGGSI GIS AHAL+ AGWDV+VL K   PPTGSPTGAGLGL+  +Q+IIQSW+
Sbjct: 7   KPKAVIVGGSIGGISSAHALILAGWDVLVLGKTTSPPTGSPTGAGLGLNSLSQQIIQSWI 66

Query: 66  NGRPHLLHLATVPLTIDQNQATDN-AKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI 124
           +  P  LH  T PLTIDQN  TD+  KV RTL RD++ NFRAAHW DLHG+LY +LPP+I
Sbjct: 67  SKPPQFLHNTTHPLTIDQNLVTDSEKKVNRTLTRDESLNFRAAHWGDLHGVLYESLPPQI 126

Query: 125 FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSIRQSFLSDFKLR 184
           FL GH +LSF ++  K  V VKAKV++T EVIEI G+LLVAADGCLSSIR+ +L DFKLR
Sbjct: 127 FLWGHIFLSFHVANEKGPVIVKAKVVKTGEVIEIVGDLLVAADGCLSSIRRKYLPDFKLR 186

Query: 185 YSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELLNKRLNWVW 244
           YSGYCAWRGVLDFS IE+SE IKG+++ YPDLGKCLYFDLASGTHSV YEL NK+LNW+W
Sbjct: 187 YSGYCAWRGVLDFSEIENSETIKGIKKAYPDLGKCLYFDLASGTHSVLYELPNKKLNWIW 246

Query: 245 YINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDPLK 304
           Y+NQPEP +KG SVT +V++DMI+ MH+EAEK+W+PE  KV+KETKEPF+N +YD DPL+
Sbjct: 247 YVNQPEPEVKGTSVTTKVTSDMIQKMHQEAEKIWIPELAKVMKETKEPFLNFIYDSDPLE 306

Query: 305 QIFWSNVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTVRLP 364
           +IFW NVVL+G+AAHPTTPH LRSTNM+ILDA VLGK +EKWG E L SALEEYQ  RLP
Sbjct: 307 KIFWDNVVLVGEAAHPTTPHYLRSTNMTILDAAVLGKCIEKWGTEMLESALEEYQLTRLP 366

Query: 365 VTSKQVLHSRRLGRIKQGLALPDREPFNTKTASPQDCQELQQKTMPFFADLP 416
           VTSKQVLH+RRLGRIKQGL LPDR+PF+ K+A  ++CQE+     PFF D P
Sbjct: 367 VTSKQVLHARRLGRIKQGLVLPDRDPFDPKSARQEECQEIILTNTPFFNDAP 418

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442198|ref|XP_004138869.1| PREDICTED: 6-hydroxynicotinate 3-monooxygenase-like [Cucumis sativus] gi|449499632|ref|XP_004160869.1| PREDICTED: 6-hydroxynicotinate 3-monooxygenase-like [Cucumis sativus]

 Score =  611 bits (1576), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 288/417 (69%), Positives = 348/417 (83%), Gaps = 3/417 (0%)

Query: 8   KAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNG 67
           KA+IVGGSIAGISCAHALL+AGW V VLEK+  PPTGS TGAGLGLD  +Q ++QSWL+ 
Sbjct: 10  KALIVGGSIAGISCAHALLKAGWKVQVLEKSTTPPTGSSTGAGLGLDLLSQSLVQSWLSD 69

Query: 68  RPHLLHLATVPLTIDQNQATDNAKVTR--TLARDDNFNFRAAHWADLHGLLYNALPPEIF 125
            PHLL  +T+PLT+DQNQAT + +      L+RD+NFNFRAA WADLHGLLYN LPPEIF
Sbjct: 70  -PHLLLHSTLPLTVDQNQATVDRETKERWILSRDENFNFRAALWADLHGLLYNDLPPEIF 128

Query: 126 LRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSIRQSFLSDFKLRY 185
           L GH +LS   SE K+ V ++A+VLQ+ E++EI G+LLV ADGCLSS+ Q+FL +F+LRY
Sbjct: 129 LWGHHFLSLSKSEDKSCVKIRARVLQSGEIVEIVGDLLVGADGCLSSVLQTFLPNFQLRY 188

Query: 186 SGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELLNKRLNWVWY 245
           SGYCAWRGVLD S  E+SE I G+R+ YP+LGKCLYFDL S TH   YEL  K+LNW+WY
Sbjct: 189 SGYCAWRGVLDCSKNENSETIVGIRKAYPELGKCLYFDLGSATHIGLYELPKKKLNWIWY 248

Query: 246 INQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDPLKQ 305
           +NQPEP +KGNS+TMRV ++M++ MHE+AEKVW+PEFVKV+KETKEPFIN +YD + ++Q
Sbjct: 249 VNQPEPQLKGNSMTMRVQDEMVRKMHEQAEKVWVPEFVKVVKETKEPFINVIYDRNSMEQ 308

Query: 306 IFWSNVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTVRLPV 365
           + W NVVL+GDAAHPTTPHGLRSTNMSILDA VLGK LEKWG E L SAL EYQ+VRLPV
Sbjct: 309 LVWDNVVLVGDAAHPTTPHGLRSTNMSILDAAVLGKCLEKWGPENLQSALAEYQSVRLPV 368

Query: 366 TSKQVLHSRRLGRIKQGLALPDREPFNTKTASPQDCQELQQKTMPFFADLPSLVDST 422
           +SKQVLHSR LGR+KQGLALPDREPF+ + A+P++C ELQQK MPFF D+P L+D+T
Sbjct: 369 SSKQVLHSRYLGRLKQGLALPDREPFDPRVATPENCLELQQKNMPFFNDVPQLIDTT 425

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255546595|ref|XP_002514357.1| monoxygenase, putative [Ricinus communis] gi|223546813|gb|EEF48311.1| monoxygenase, putative [Ricinus communis]

 Score =  606 bits (1563), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 287/418 (68%), Positives = 339/418 (81%), Gaps = 1/418 (0%)

Query: 1   MEKKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRI 60
           M KK+K KA+IVGGSIAGISCAHAL+ AGW+V+VLEK+  PP GS TGAGL +D  +Q+I
Sbjct: 1   MSKKQKPKAIIVGGSIAGISCAHALISAGWNVLVLEKSNSPPKGSSTGAGLRIDLLSQKI 60

Query: 61  IQSWLNGRPHLLHLATVPLTIDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNAL 120
           I+SW + +P      T PL +DQN  TD     R L RD+NFNFR AHWADLHGLLYN L
Sbjct: 61  IKSWFS-QPQRFQEITFPLAMDQNVVTDGDNTIRILTRDENFNFRTAHWADLHGLLYNDL 119

Query: 121 PPEIFLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSIRQSFLSD 180
           PPEIFL G+   SFC SE KT+V VKAK LQTDE+IE+ G+LLVAADG  S+IR+  L D
Sbjct: 120 PPEIFLWGYLCFSFCNSEGKTSVNVKAKCLQTDEIIELNGDLLVAADGGQSTIRRILLPD 179

Query: 181 FKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELLNKRL 240
            KLRYSGYCAWRGVLDFSG   S+ + G+++VYPDLG C YF L+SG+HSV YEL  + L
Sbjct: 180 LKLRYSGYCAWRGVLDFSGKRSSDTVTGLKKVYPDLGNCSYFHLSSGSHSVLYELRKEEL 239

Query: 241 NWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDC 300
           NWVWY++ PEP +KG+SVTM+VS+DMI NM++EAEKVW PEFVKV+KET+EPF+N +YDC
Sbjct: 240 NWVWYVHHPEPELKGSSVTMKVSSDMINNMYQEAEKVWPPEFVKVMKETQEPFLNFIYDC 299

Query: 301 DPLKQIFWSNVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQT 360
           DPL+QI W NVVLIGDAAHPTTPHG RSTNM+I DA VLGK L KW VE L SALEEYQ 
Sbjct: 300 DPLEQIVWENVVLIGDAAHPTTPHGARSTNMAIADAAVLGKCLGKWRVENLPSALEEYQH 359

Query: 361 VRLPVTSKQVLHSRRLGRIKQGLALPDREPFNTKTASPQDCQELQQKTMPFFADLPSL 418
           +RLPVTSKQVLHSRR+GRIKQGL+LPDR+PF+ KTA+P+DC+ELQ K MPFFA +P L
Sbjct: 360 LRLPVTSKQVLHSRRMGRIKQGLSLPDRKPFDPKTATPEDCEELQDKNMPFFAGVPGL 417

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563844|ref|XP_003550168.1| PREDICTED: 6-hydroxynicotinate 3-monooxygenase-like [Glycine max]

 Score =  605 bits (1560), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 298/416 (71%), Positives = 347/416 (83%), Gaps = 6/416 (1%)

Query: 5   EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSW 64
           EK KAVI+GGSIAGIS AHAL  AGWDV+VLEK   PPTGSPTGAGLGL+  +Q+II SW
Sbjct: 19  EKPKAVIIGGSIAGISSAHALTLAGWDVLVLEKTTSPPTGSPTGAGLGLNSLSQQIIHSW 78

Query: 65  LNGRPH---LLHLATVPLTIDQNQATDN-AKVTRTLARDDNFNFRAAHWADLHGLLYNAL 120
           L   PH   LLH  T+ LTIDQN ATD+  K + TL RD++FNFRAAHWADLHGLLYNAL
Sbjct: 79  L--PPHQKQLLHNTTLTLTIDQNHATDSEKKFSWTLTRDESFNFRAAHWADLHGLLYNAL 136

Query: 121 PPEIFLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSIRQSFLSD 180
           PP +FL GH +LS  +++ K +V VKAKVL+T ++IEI G+ LVAADGCLSS+RQ +L D
Sbjct: 137 PPNVFLWGHLFLSVHVADDKGSVIVKAKVLETGKIIEIVGDFLVAADGCLSSLRQKYLPD 196

Query: 181 FKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELLNKRL 240
           FKLRYSGYCAWRGVLDFS IE+SE I G+R+ YPDLGKCLYFDLASGTH+V YEL NK+L
Sbjct: 197 FKLRYSGYCAWRGVLDFSKIENSETINGIRKAYPDLGKCLYFDLASGTHTVLYELQNKKL 256

Query: 241 NWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDC 300
           NW+WY+NQPEP +KG SVTM+V+NDMI+ MH+EAE+VW+PE VKVIKETK+PF+N +YD 
Sbjct: 257 NWIWYVNQPEPEVKGTSVTMKVNNDMIQKMHQEAEQVWIPELVKVIKETKDPFLNFIYDS 316

Query: 301 DPLKQIFWSNVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQT 360
           DPL++IFW NVVL+GDAAHPTTPH LRSTNMSILDA VLGK +EKWG E L SALEEYQ 
Sbjct: 317 DPLEKIFWDNVVLVGDAAHPTTPHCLRSTNMSILDAAVLGKCIEKWGPEKLGSALEEYQF 376

Query: 361 VRLPVTSKQVLHSRRLGRIKQGLALPDREPFNTKTASPQDCQELQQKTMPFFADLP 416
           VRLPVTSK+VL+SRRLGR+KQGL LPDREPF+ K   P+DCQEL  +  PFF D P
Sbjct: 377 VRLPVTSKEVLYSRRLGRLKQGLVLPDREPFDPKLIRPEDCQELLLRNTPFFNDEP 432

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297811247|ref|XP_002873507.1| monooxygenase family protein [Arabidopsis lyrata subsp. lyrata] gi|297319344|gb|EFH49766.1| monooxygenase family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  560 bits (1443), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 265/414 (64%), Positives = 332/414 (80%), Gaps = 13/414 (3%)

Query: 4   KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQS 63
           K+KGKA+IVGGSIAG+SCAH+L  AGWDV+VLEK+  PP GSPTGAGLGLD  A++II+S
Sbjct: 3   KKKGKAIIVGGSIAGLSCAHSLTLAGWDVLVLEKSSEPPVGSPTGAGLGLDPQARQIIKS 62

Query: 64  WLNGRPHLLHLATVPLTIDQNQATDNAKV-TRTLARDDNFNFRAAHWADLHGLLYNALPP 122
           WL  RPHLL   T+PLTIDQNQ TD+ K  T+ L RD++F+FRAA+W+D+H LLY ALP 
Sbjct: 63  WLP-RPHLLDEITLPLTIDQNQTTDSEKKETKILTRDEDFDFRAAYWSDVHSLLYKALPQ 121

Query: 123 EIFLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSIRQSFLSDFK 182
            +FL GH++LSF +S+ ++ V VK  V++T E +EI+G+LLVAADGCLSSIR+SFL DFK
Sbjct: 122 TLFLWGHKFLSFTMSQDESIVKVKTLVIETQETVEIEGDLLVAADGCLSSIRKSFLPDFK 181

Query: 183 LRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELLNKRLNW 242
           LRYSGYCAWRGV DFSG E+SE + G+++VYPDLGKCLYFDL   TH+VFYEL NK+LNW
Sbjct: 182 LRYSGYCAWRGVFDFSGNENSETVTGIKKVYPDLGKCLYFDLGEQTHTVFYELFNKKLNW 241

Query: 243 VWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDP 302
           +WY+NQPEP +K NSVT++VS +MI  MH+EAE +W+PE  ++++ETK+PF+N +YDCDP
Sbjct: 242 IWYVNQPEPDLKSNSVTLKVSQEMINKMHQEAETIWIPELARLMRETKDPFLNVIYDCDP 301

Query: 303 LKQIFWSNVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTVR 362
           L++IFW N+VL+GDAAHPTTPHGLRSTNMSILDA VLGK LEK   + L   L+EYQ +R
Sbjct: 302 LERIFWGNIVLVGDAAHPTTPHGLRSTNMSILDAEVLGKCLEKCKPDNLSLGLKEYQRIR 361

Query: 363 LPVTSKQVLHSRRLGRIKQGLALPDREPFNTKTASPQDCQELQQKTMPFFADLP 416
           LPV S+QVL++RRLGRIKQGL   D +              L+Q+TMPFF   P
Sbjct: 362 LPVVSEQVLYARRLGRIKQGL---DHDGIGGGG--------LEQRTMPFFTCAP 404

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	426
TAIR|locus:2147982	408	AT5G11330 [Arabidopsis thalian	0.946	0.987	0.591	2.7e-132
UNIPROTKB|G4NIF6	443	MGG_15421 "Monooxygenase" [Mag	0.218	0.209	0.344	3.9e-10
UNIPROTKB|A6T923	384	hpxO "FAD-dependent urate hydr	0.241	0.268	0.289	1.1e-08
UNIPROTKB|B6D1N4	384	hpxO "FAD-dependent urate hydr	0.241	0.268	0.289	3.1e-08
TIGR_CMR|SPO_3692	395	SPO_3692 "monooxygenase, putat	0.321	0.346	0.287	4.2e-08
TIGR_CMR|CPS_3257	465	CPS_3257 "monooxygenase family	0.556	0.509	0.242	1.4e-07
UNIPROTKB|B5B0J6	384	hpxO "FAD-dependent urate hydr	0.241	0.268	0.261	1.6e-07
TAIR|locus:2158083	667	ABA1 "ABA DEFICIENT 1" [Arabid	0.138	0.088	0.390	3e-07
UNIPROTKB|G4NFB3	415	MGG_04240 "Uncharacterized pro	0.495	0.508	0.246	3.1e-07
UNIPROTKB|P86491	385	P86491 "6-hydroxynicotinate 3-	0.455	0.503	0.264	4.9e-07

TAIR|locus:2147982 AT5G11330 [Arabidopsis thaliana (taxid:3702)]

 Score = 1297 (461.6 bits), Expect = 2.7e-132, P = 2.7e-132
 Identities = 245/414 (59%), Positives = 309/414 (74%)

Query:     4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKXXXXXXXXXXXXXXXXDRPAQRIIQS 63
             K+KGKA+IVGGSIAG+SCAH+L  A WDV+VLEK                D  A++II+S
Sbjct:     3 KKKGKAIIVGGSIAGLSCAHSLTLACWDVLVLEKSSEPPVGSPTGAGLGLDPQARQIIKS 62

Query:    64 WLNGRPHLLHLATVPLTIDQNQATDNAK-VTRTLARDDNFNFRAAHWADLHGLLYNALPP 122
             WL   P LL   T+PL+IDQNQ TD+ K VTR L RD++F+FRAA+W+D+  LLYNALP 
Sbjct:    63 WLT-TPQLLDEITLPLSIDQNQTTDSEKKVTRILTRDEDFDFRAAYWSDIQSLLYNALPQ 121

Query:   123 EIFLRGHQYLSFCISEXXXXXXXXXXXLQTDEVIEIKGNLLVAADGCLSSIRQSFLSDFK 182
              +FL GH++LSF +S+           ++T E +EI+G+LL+AADGCLSSIR++FL DFK
Sbjct:   122 TMFLWGHKFLSFTMSQDESNVKVKTLVVETQETVEIEGDLLIAADGCLSSIRKTFLPDFK 181

Query:   183 LRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELLNKRLNW 242
             LRYSGYCAWRGV DFSG E+SE + G+++VYPDLGKCLYFDL   THSVFYEL NK+LNW
Sbjct:   182 LRYSGYCAWRGVFDFSGNENSETVSGIKKVYPDLGKCLYFDLGEQTHSVFYELFNKKLNW 241

Query:   243 VWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDP 302
             +WY+NQPEP +K NSVT++VS +MI  MH+EAE +W+PE  +++ ETK+PF+N +YD DP
Sbjct:   242 IWYVNQPEPDLKSNSVTLKVSQEMINKMHQEAETIWIPELARLMSETKDPFLNVIYDSDP 301

Query:   303 LKQIFWSNVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTVR 362
             L++IFW N+VL+GDAAHPTTPHGLRSTNMSILDA VLGK LE  G E +   LEEYQ +R
Sbjct:   302 LERIFWGNIVLVGDAAHPTTPHGLRSTNMSILDAEVLGKCLENCGPENVSLGLEEYQRIR 361

Query:   363 LPVTSKQVLHSRRLGRIKQGLALPDREPFNTKTASPQDCQELQQKTMPFFADLP 416
             LPV S+QVL++RRLGRIKQGL   D +              L+Q+ MPFF+  P
Sbjct:   362 LPVVSEQVLYARRLGRIKQGL---DHDGIGDGVFG------LEQRNMPFFSCAP 406

GO:0005739 "mitochondrion" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA;ISS

UNIPROTKB|G4NIF6 MGG_15421 "Monooxygenase" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 129 (50.5 bits), Expect = 3.9e-10, Sum P(3) = 3.9e-10
 Identities = 32/93 (34%), Positives = 49/93 (52%)

Query:   285 VIKETKEPFINAMYDCDPLKQIFWSNVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLE 344
             +I  T+  F   M D DPL++  +  + L GDAAH   P G      +I+DA  + + L 
Sbjct:   288 LIAPTERVFEFPMCDRDPLERWSFGRLTLTGDAAHCMYPIGSNGATQAIIDAETIAQCLT 347

Query:   345 KWGVEGLLSALEEYQTVRLPVTSKQVLHSRRLG 377
                 E +  AL++Y+ +RLP T+K V  +R  G
Sbjct:   348 GTETEKIPEALKKYEEIRLPPTAKIVYANRANG 380

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|A6T923 hpxO "FAD-dependent urate hydroxylase" [Klebsiella pneumoniae subsp. pneumoniae MGH 78578 (taxid:272620)]

 Score = 105 (42.0 bits), Expect = 1.1e-08, Sum P(3) = 1.1e-08
 Identities = 31/107 (28%), Positives = 48/107 (44%)

Query:   278 WLPEFVKVIKETKEPFINAM--YDCDPLKQIFWSNVVLIGDAAHPTTPHGLRSTNMSILD 335
             W P   K+I        N +  +D +P  ++    V L+GDA H TTP   +    ++ D
Sbjct:   245 WAPPVQKLIAALDPQTTNRIEIHDIEPFSRLVRGRVALLGDAGHSTTPDIGQGGCAAMED 304

Query:   336 AMVLGKSLEKWGVEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQG 382
             A+VLG    +     + +AL EY+  R       VL +R+   I  G
Sbjct:   305 AVVLGAVFRQ--TRDIAAALREYEAQRCDRVRDLVLKARKRCDITHG 349

GO:0016709 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen" evidence=IDA

GO:0019628 "urate catabolic process" evidence=IDA

GO:0071949 "FAD binding" evidence=IDA

UNIPROTKB|B6D1N4 hpxO "FAD-dependent urate hydroxylase" [Klebsiella pneumoniae (taxid:573)]

 Score = 101 (40.6 bits), Expect = 3.1e-08, Sum P(3) = 3.1e-08
 Identities = 31/107 (28%), Positives = 48/107 (44%)

Query:   278 WLPEFVKVIKETKEPFINAM--YDCDPLKQIFWSNVVLIGDAAHPTTPHGLRSTNMSILD 335
             W P   K+I        N +  +D +P  ++    V L+GDA H TTP   +    ++ D
Sbjct:   245 WAPPVQKLIAALDPQTTNRIEIHDIEPFSRLVRGRVALLGDAGHSTTPDIGQGGCAAMED 304

Query:   336 AMVLGKSLEKWGVEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQG 382
             A+VLG    +     + +AL EY+  R       VL +R+   I  G
Sbjct:   305 AVVLGAVFRQ--TRDIAAALCEYEAQRCDRVRDLVLKARKRCDITHG 349

GO:0016709 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen" evidence=ISS

GO:0019628 "urate catabolic process" evidence=ISS

GO:0071949 "FAD binding" evidence=ISS

TIGR_CMR|SPO_3692 SPO_3692 "monooxygenase, putative" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 95 (38.5 bits), Expect = 4.2e-08, Sum P(3) = 4.2e-08
 Identities = 44/153 (28%), Positives = 71/153 (46%)

Query:   229 HSVFYELLNKR-LNWV--WYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKV 285
             H V Y L   R  N V  ++ + P+P+  G    M V+ D ++   E       P   +V
Sbjct:   212 HIVHYPLQGWRSFNLVVTYHNDAPDPVA-G----MPVTADEVRKGFEHVS----PVARQV 262

Query:   286 IKETKEPFINAMYDCDPLKQIFWSNVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEK 345
             I + ++  +  + D DP+       V L+GDAAHP   +  +   M++ DA+ L   + +
Sbjct:   263 IDKGQDWKLWVLCDRDPVMTWTEGRVALLGDAAHPMLQYFAQGACMAMEDAVRLSALVGE 322

Query:   346 WG-VEGLLSALEEYQTVRLPVTSKQVLHSRRLG 377
              G +E LL     YQ  R   T++  L SR +G
Sbjct:   323 GGEIETLL---RRYQDSRRLRTARVQLQSREIG 352

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0006725 "cellular aromatic compound metabolic process" evidence=ISS

TIGR_CMR|CPS_3257 CPS_3257 "monooxygenase family protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 145 (56.1 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
 Identities = 63/260 (24%), Positives = 108/260 (41%)

Query:   128 GHQYLSFCISEXXXXXXXXXXXLQT-DEVIEIKGNLLVAADGCLSSIRQSFLSDFKLRYS 186
             GHQ +SF                Q   ++   K +++V ADG  SS+R+  + +     +
Sbjct:   186 GHQLVSFKEKTNECTDQFVDLSFQVAGKIKNAKADIVVGADGIRSSVRKLLIGED----A 241

Query:   187 GYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELLNKRLNWVWYI 246
                 + G L   GI     + G+    P L     F  A+G H   Y +     + +W +
Sbjct:   242 SPLLYLGCLVILGICPLAALDGLES--PLLDSATVFQTANG-HERIYIMPYSSDSVMWQL 298

Query:   247 NQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINA--MYDCDPLK 304
             + P P  +  +++      + K      +  W     +++  T E  I+   +YD   LK
Sbjct:   299 SFPMPEEEAKALSALGVQALKKEACHRCQ--WHDPIPQILAATLEAQISGYPVYDRALLK 356

Query:   305 QIFWSN---VVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEK-------WGVEGLL-S 353
               F      V LIGDAAHP +P   +  N ++LDA+ L + + K       W   G+  S
Sbjct:   357 SEFLEKGDQVTLIGDAAHPMSPFKGQGANQALLDALALARGISKGCRPFSRWRETGIRES 416

Query:   354 ALEEYQTVRLPVTSKQVLHS 373
              L E+++  L  ++ +V  S
Sbjct:   417 VLTEFESEMLARSASKVKDS 436

GO:0003824 "catalytic activity" evidence=ISS

GO:0008152 "metabolic process" evidence=ISS

UNIPROTKB|B5B0J6 hpxO "FAD-dependent urate hydroxylase" [Klebsiella oxytoca (taxid:571)]

 Score = 99 (39.9 bits), Expect = 1.6e-07, Sum P(3) = 1.6e-07
 Identities = 28/107 (26%), Positives = 48/107 (44%)

Query:   278 WLPEFVKVIKETKEPFINAM--YDCDPLKQIFWSNVVLIGDAAHPTTPHGLRSTNMSILD 335
             W P+  K+I        N +  +D +P +++    V L+GDA H TTP   +    ++ D
Sbjct:   245 WAPQVQKLIAALDPQTTNRIEIHDIEPFERLVRGKVALLGDAGHSTTPDIGQGGCAALED 304

Query:   336 AMVLGKSLEKWGVEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQG 382
             A+VLG    +     +   L +Y+  R       VL +R+   +  G
Sbjct:   305 AVVLGDLFRE--SRDIAGVLRQYEAQRCDRVRDLVLKARKRCDVTHG 349

GO:0016709 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen" evidence=ISS

GO:0019628 "urate catabolic process" evidence=ISS

GO:0071949 "FAD binding" evidence=ISS

TAIR|locus:2158083 ABA1 "ABA DEFICIENT 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 86 (35.3 bits), Expect = 3.0e-07, Sum P(3) = 3.0e-07
 Identities = 25/64 (39%), Positives = 34/64 (53%)

Query:   159 KGNLLVAADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGK 218
             +G+LLV ADG  S +R +     +  YSGY  + G+ DF    D E + G R V+  LG 
Sbjct:   235 EGDLLVGADGIWSKVRNNLFGRSEATYSGYTCYTGIADFIPA-DIESV-GYR-VF--LGH 289

Query:   219 CLYF 222
               YF
Sbjct:   290 KQYF 293

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IEA;IDA

GO:0009540 "zeaxanthin epoxidase [overall

GO:0009688 "abscisic acid biosynthetic process" evidence=IEA;TAS

GO:0016020 "membrane" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006970 "response to osmotic stress" evidence=IMP

GO:0009414 "response to water deprivation" evidence=IMP

GO:0010182 "sugar mediated signaling pathway" evidence=TAS

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009408 "response to heat" evidence=IMP

GO:0010114 "response to red light" evidence=IEP

GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA

GO:0016123 "xanthophyll biosynthetic process" evidence=IMP

UNIPROTKB|G4NFB3 MGG_04240 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 125 (49.1 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
 Identities = 58/235 (24%), Positives = 94/235 (40%)

Query:   159 KGNLLVAADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGK 218
             KG  L+  DG  S  R+  L+   L   G  ++ G+    GI  + + + + +  P L  
Sbjct:   156 KGEFLIGCDGLKSKTRRWLLASKGLE-DGQPSYTGLAQTGGISPTPV-QFLSK--PGLRN 211

Query:   219 CLYFDLASGTHSVFYELLNKRLNWVWYINQP--EPIMKG---NSVTMRVSNDMIKNMHEE 273
               ++ +  G H V Y +  +  +W    N+   E    G   +    R   ++ KN+ + 
Sbjct:   212 --WYGV--GLHLVCYPITAEHTSWALTRNESAAEEASWGLFDDERRERTKVELEKNLRDL 267

Query:   274 AEKVWLPEFVKVIKETKEPFINAMYDCDPLKQIFW--SNVVLIGDAAHPTTPHGLRSTNM 331
             +   W P   +++   +      +YD   LK   W     VL+GDA HPT  H  +  N 
Sbjct:   268 S---WDPVVAEMVGNAQRLIKYGIYDRPELKPSDWYLGRCVLMGDAVHPTAVHLGQGANQ 324

Query:   332 SILDAMVLGKSLEKWG------VEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIK 380
             +  D   L   L           E L     +Y  +R P TS  V  +RR G I+
Sbjct:   325 ACEDCFYLTAELPDCDPATVIPTEELTRVFAKYAEIRQPRTSVLVEGARRQGEIR 379

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|P86491 P86491 "6-hydroxynicotinate 3-monooxygenase" [Pseudomonas fluorescens (taxid:294)]

 Score = 135 (52.6 bits), Expect = 4.9e-07, Sum P(2) = 4.9e-07
 Identities = 56/212 (26%), Positives = 91/212 (42%)

Query:   159 KGNLLVAADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGK 218
             + ++++  DG  S IR+  L     +Y+GY A R V         E+  GM    P    
Sbjct:   151 EADIVIGPDGVNSRIREELLGPELPKYAGYLAHRAVFP-----TPEVKAGM---LP-FDA 201

Query:   219 CLYFDLASGTHSVFYELLNKRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVW 278
             C+ +  +   H + Y +  K  + ++Y+    P+ K +     + +   K    EA   W
Sbjct:   202 CVKW-WSDDRHMMTYFVTGKA-DELYYVTGV-PVEKWDLNDRWLESS--KEEMREAFSGW 256

Query:   279 LPEFVKVIKETKEPFINAMYDCDPLKQIFWSN--VVLIGDAAHPTTPHGLRSTNMSILDA 336
              P    +I  T E    ++ + DPL    WS   +VL+GDA HP  PH  +   M+I D 
Sbjct:   257 HPTVQALIDATVEVTKWSLLERDPLP--LWSRGRLVLLGDACHPMKPHMAQGAAMAIEDG 314

Query:   337 MVLGKSLEKWGVEGLLSALEEYQTVRLPVTSK 368
              +L + L++ G      A   Y+  R    SK
Sbjct:   315 AMLARCLKEVGAHNHELAFALYEANRAERASK 346

GO:0004497 "monooxygenase activity" evidence=IDA

GO:0019439 "aromatic compound catabolic process" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.14.13	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	426
PRK07236	386	PRK07236, PRK07236, hypothetical protein; Provisio	2e-39
COG0654	387	COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydrox	4e-33
PRK06753	373	PRK06753, PRK06753, hypothetical protein; Provisio	1e-28
PRK07538	413	PRK07538, PRK07538, hypothetical protein; Provisio	5e-23
PRK06475	400	PRK06475, PRK06475, salicylate hydroxylase; Provis	5e-20
PRK08163	396	PRK08163, PRK08163, salicylate hydroxylase; Provis	2e-11
TIGR03219	414	TIGR03219, salicylate_mono, salicylate 1-monooxyge	9e-11
PRK08163	396	PRK08163, PRK08163, salicylate hydroxylase; Provis	6e-10
PLN02927	668	PLN02927, PLN02927, antheraxanthin epoxidase/zeaxa	6e-09
PRK06847	375	PRK06847, PRK06847, hypothetical protein; Provisio	9e-08
COG0644	396	COG0644, FixC, Dehydrogenases (flavoproteins) [Ene	1e-07
pfam01266	234	pfam01266, DAO, FAD dependent oxidoreductase	4e-07
COG0665	387	COG0665, DadA, Glycine/D-amino acid oxidases (deam	1e-06
pfam13450	66	pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-	3e-06
PRK01747	662	PRK01747, mnmC, bifunctional tRNA (mnm(5)s(2)U34)-	4e-05
pfam00890	401	pfam00890, FAD_binding_2, FAD binding domain	7e-05
COG1233	487	COG1233, COG1233, Phytoene dehydrogenase and relat	9e-05
PRK07364	415	PRK07364, PRK07364, 2-octaprenyl-6-methoxyphenyl h	1e-04
pfam07992	283	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp	1e-04
COG3380	331	COG3380, COG3380, Predicted NAD/FAD-dependent oxid	1e-04
PRK11749	457	PRK11749, PRK11749, dihydropyrimidine dehydrogenas	2e-04
PRK06184	502	PRK06184, PRK06184, hypothetical protein; Provisio	2e-04
PRK07045	388	PRK07045, PRK07045, putative monooxygenase; Review	3e-04
PRK06847	375	PRK06847, PRK06847, hypothetical protein; Provisio	5e-04
PRK12810	471	PRK12810, gltD, glutamate synthase subunit beta; R	6e-04
PRK08255	765	PRK08255, PRK08255, salicylyl-CoA 5-hydroxylase; R	0.001
TIGR01984	382	TIGR01984, UbiH, 2-polyprenyl-6-methoxyphenol 4-hy	0.001
PRK07233	434	PRK07233, PRK07233, hypothetical protein; Provisio	0.001
TIGR02734	502	TIGR02734, crtI_fam, phytoene desaturase	0.002
TIGR01988	387	TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hyd	0.003
COG1251	793	COG1251, NirB, NAD(P)H-nitrite reductase [Energy p	0.004

>gnl|CDD|235980 PRK07236, PRK07236, hypothetical protein; Provisional

 Score =  145 bits (368), Expect = 2e-39
 Identities = 110/431 (25%), Positives = 169/431 (39%), Gaps = 85/431 (19%)

Query: 1   MEKKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRI 60
           M      +AV++GGS+ G+  A  L RAGWDV V E++     G   GAG+ L     R 
Sbjct: 1   MTHMSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGR--GAGIVLQPELLRA 58

Query: 61  IQSWLNGRPHLLHLATVPLTIDQNQATDNAKVT----RTLARDDNFNFRAAH-------- 108
                      L  A V L         +  V       L RD     R           
Sbjct: 59  -----------LAEAGVAL-------PADIGVPSRERIYLDRDG----RVVQRRPMPQTQ 96

Query: 109 --WADLHGLLYNALPPEIFLRGHQYLSFCISEVKTTVTVK----AKVLQTDEVIEIKGNL 162
             W  L+  L  A P E +  G   + F   +    VT +     +            +L
Sbjct: 97  TSWNVLYRALRAAFPAERYHLGETLVGF--EQDGDRVTARFADGRRE---------TADL 145

Query: 163 LVAADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYF 222
           LV ADG  S++R   L D +  Y+GY AWRG++D + +           +         F
Sbjct: 146 LVGADGGRSTVRAQLLPDVRPTYAGYVAWRGLVDEAALPPEAR----AALRDRFT----F 197

Query: 223 DLASGTHSVFY---------ELLNKRLNWVWYINQPEP-----IMKGNSVTMR------- 261
            L  G+H + Y         E   +R NWVWY N P       ++     T R       
Sbjct: 198 QLGPGSHILGYPVPGEDGSTEPGKRRYNWVWYRNAPAGEELDELLTDRDGTRRPFSVPPG 257

Query: 262 -VSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDPLKQIFWSNVVLIGDAAHP 320
            + +D++  + ++A ++  P F ++++ T +PF+ A++D +  +  F   V L+GDAA  
Sbjct: 258 ALRDDVLAELRDDAAELLAPVFAELVEATAQPFVQAIFDLEVPRMAF-GRVALLGDAAFV 316

Query: 321 TTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIK 380
             PH       +  DA+ L ++L       + +AL  ++  RL V +  V   RRLG   
Sbjct: 317 ARPHTAAGVAKAAADAVALAEALAAAA-GDIDAALAAWEAERLAVGAAIVARGRRLGARL 375

Query: 381 QGLALPDREPF 391
           Q       E  
Sbjct: 376 QAQGRDPPERA 386

Length = 386

>gnl|CDD|223727 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

 Score =  127 bits (322), Expect = 4e-33
 Identities = 83/395 (21%), Positives = 126/395 (31%), Gaps = 54/395 (13%)

Query: 8   KAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNG 67
              IVG   AG++ A AL RAG DV +LE+A  P      G G+ L   A R ++  L  
Sbjct: 4   DVAIVGAGPAGLALALALARAGLDVTLLERA--PRELLERGRGIALSPNALRALER-LGL 60

Query: 68  RPHLLHLATVPLTIDQNQATDNAKVTRTLA-RDDNFNFRAAHWADLHGLLYNAL---PPE 123
              L  L   PL +          +    A             +DL   L  A    P  
Sbjct: 61  WDRLEALGVPPLHVMVVDDGGRRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNV 120

Query: 124 IFLRGHQYLSFCISEVKTT---VTVKAKVLQTDEVIEIKGNLLVAADGCLSSIRQSFLSD 180
               G +     +  V+     VTV    L  D    +  +LLV ADG  S++R++    
Sbjct: 121 TLRFGAE-----VEAVEQDGDGVTV---TLSFDG-ETLDADLLVGADGANSAVRRAA--- 168

Query: 181 FKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELLNKRL 240
               +SG    +  L  +                                    L + R 
Sbjct: 169 GIAEFSGRDYGQTALVAN-----------VEPEEPHEGRAGERFTHAGPFALLPLPDNRS 217

Query: 241 NWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEF------VKVIKETKEPFI 294
           + VW                    + ++ + +E     L         +  +        
Sbjct: 218 SVVWS-------------LPPGPAEDLQGLSDEEFLRELQRRLGERDPLGRVTLVSSRSA 264

Query: 295 NAMYDCDPLKQIFWSNVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEK-WGVEGLLS 353
             +      ++     VVLIGDAAH   P   +  N+++ DA  L ++L          +
Sbjct: 265 FPLSLRVA-ERYRRGRVVLIGDAAHAMHPLAGQGANLALEDAAALAEALAAAPRPGADAA 323

Query: 354 ALEEYQTVRLPVTSKQVLHSRRLGRIKQGLALPDR 388
           AL  Y+  R P        SR LGR+        R
Sbjct: 324 ALAAYEARRRPRAEAIQKLSRALGRLFSADGPFAR 358

Length = 387

>gnl|CDD|168661 PRK06753, PRK06753, hypothetical protein; Provisional

 Score =  115 bits (289), Expect = 1e-28
 Identities = 89/386 (23%), Positives = 148/386 (38%), Gaps = 60/386 (15%)

Query: 8   KAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNG 67
           K  I+G  I G++ A  L   G +V V EK     +    GAG+G+      +I+     
Sbjct: 2   KIAIIGAGIGGLTAAALLQEQGHEVKVFEKN---ESVKEVGAGIGI---GDNVIKK---- 51

Query: 68  RPHLLHLATVPLTIDQNQATDNAKVTRTLARDDNF-----------NFRAAHWADLHGLL 116
                 L    L      A         L                 N    H   L  ++
Sbjct: 52  ------LGNHDLAKGIKNAGQILSTMNLLDDKGTLLNKVKLKSNTLNV-TLHRQTLIDII 104

Query: 117 YNALPPEIFLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSIRQS 176
            + +  +    G +         K         +   +      +L + ADG  S +RQS
Sbjct: 105 KSYVKEDAIFTGKEV-------TKIENETDKVTIHFADGESEAFDLCIGADGIHSKVRQS 157

Query: 177 FLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELL 236
             +D K+RY GY  +RG++D   ++  +  K             Y+    G   +   LL
Sbjct: 158 VNADSKVRYQGYTCFRGLIDDIDLKLPDCAKE------------YWG-TKGRFGIV-PLL 203

Query: 237 NKRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFI-N 295
           N +  W   IN  E   K +S           +   E  ++       + K+++   + +
Sbjct: 204 NNQAYWFITINAKERDPKYSSFGKPHLQAYFNHYPNEVREI-------LDKQSETGILHH 256

Query: 296 AMYDCDPLKQIFWSNVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSAL 355
            +YD  PLK   +  +VL+GDAAH TTP+  +    ++ DA+VL   L  +  E    AL
Sbjct: 257 DIYDLKPLKSFVYGRIVLLGDAAHATTPNMGQGAGQAMEDAIVLANCLNAYDFE---KAL 313

Query: 356 EEYQTVRLPVTSKQVLHSRRLGRIKQ 381
           + Y  +R+  T+K +  SR++G+I Q
Sbjct: 314 QRYDKIRVKHTAKVIKRSRKIGKIAQ 339

Length = 373

>gnl|CDD|236046 PRK07538, PRK07538, hypothetical protein; Provisional

 Score =   99 bits (250), Expect = 5e-23
 Identities = 106/419 (25%), Positives = 157/419 (37%), Gaps = 106/419 (25%)

Query: 8   KAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNG 67
           K +I GG I G++ A  L + G +VVV E A   P   P G G+ L              
Sbjct: 2   KVLIAGGGIGGLTLALTLHQRGIEVVVFEAA---PELRPLGVGINL-------------- 44

Query: 68  RPH----LLHLATVPLTIDQNQATDNAKV-TRTLA---RDDNFNF-----RAA------- 107
            PH    L  L  +        A D   + TR LA   R     +      AA       
Sbjct: 45  LPHAVRELAELGLLD-------ALDAIGIRTRELAYFNRHGQRIWSEPRGLAAGYDWPQY 97

Query: 108 --HWADLHGLLYNA----LPPEIFLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGN 161
             H  +L  LL +A    L P+    GH+ + F      T V +        +++ ++G+
Sbjct: 98  SIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTVVFLG--DRAGGDLVSVRGD 155

Query: 162 LLVAADGCLSSIRQSFLSD-FKLRYSGYCAWRGVLDFSGIED--SEIIKGMRR----VYP 214
           +L+ ADG  S++R     D    R++G   WRGV +        S ++ G       VYP
Sbjct: 156 VLIGADGIHSAVRAQLYPDEGPPRWNGVMMWRGVTEAPPFLTGRSMVMAGHLDGKLVVYP 215

Query: 215 ---DLGKCLYFDLASGTHSVFYELLNKRLNWVWYINQPE-PIMKGNSVTMRVSNDMIKNM 270
               +        A G            +NWV  +   +    +                
Sbjct: 216 ISEPVD-------ADGRQ---------LINWVAEVRVDDAGAPRREDWNRPG-------- 251

Query: 271 HEEAEKVWLPEFV----------KVIKETKEPFINAMYDCDPLKQIFWSN--VVLIGDAA 318
             + E   LP F            +I+  +  +   M D DPL +  W+   V L+GDAA
Sbjct: 252 --DLEDF-LPHFADWRFDWLDVPALIRAAEAIYEYPMVDRDPLPR--WTRGRVTLLGDAA 306

Query: 319 HPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTVRLPVTSKQVLHSRRLG 377
           HP  P G    + +ILDA  L  +L   G     +AL  Y+  R P T++ VL +R  G
Sbjct: 307 HPMYPVGSNGASQAILDARALADALAAHGDPE--AALAAYEAERRPATAQIVLANRLNG 363

Length = 413

>gnl|CDD|180582 PRK06475, PRK06475, salicylate hydroxylase; Provisional

 Score = 91.0 bits (226), Expect = 5e-20
 Identities = 88/379 (23%), Positives = 150/379 (39%), Gaps = 56/379 (14%)

Query: 6   KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSW- 64
           +G  +I G  +AG+S A  L   GW V ++EKA      S  GAGL L   A R ++   
Sbjct: 2   RGSPLIAGAGVAGLSAALELAARGWAVTIIEKA---QELSEVGAGLQLAPNAMRHLERLG 58

Query: 65  LNGRPHLLHLATVPLTIDQNQATDNAKVTRTLARDDNFNFRAAHW---------ADLHGL 115
           +  R  L      P  +      D  K  R L      +     W         ADL   
Sbjct: 59  VADR--LSGTGVTPKAL---YLMDGRKA-RPLLAMQLGDLARKRWHHPYIVCHRADLQSA 112

Query: 116 LYNALPPEIFLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSIRQ 175
           L +A      +   +  +   S+ +T  ++ A +++T+ V  +    L+A DG  S +R 
Sbjct: 113 LLDACRNNPGIE-IKLGAEMTSQRQTGNSITATIIRTNSVETVSAAYLIACDGVWSMLRA 171

Query: 176 SFLSDF-KLRYSGYCAWRGVLDFSGIEDS--EIIKGMRRVYPDLGKCLYFDLASGTHSVF 232
              + F K R+SG+ AWR  L    +  S    +   + V   LG           H + 
Sbjct: 172 --KAGFSKARFSGHIAWRTTLAADALPASFLSAMPEHKAVSAWLGN--------KAHFIA 221

Query: 233 YELL-NKRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKE 291
           Y +   K  N+V  I   E   +  S T       +K+++ +    W    ++++    E
Sbjct: 222 YPVKGGKFFNFV-AITGGENPGEVWSKTGD--KAHLKSIYAD----WNKPVLQILAAIDE 274

Query: 292 PFINAMYDCDPLKQIFWS------NVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEK 345
                 +   PL ++  +        + +GDA+H  TP   +   M+I DA  L ++L+ 
Sbjct: 275 ------WTYWPLFEMADAQFVGPDRTIFLGDASHAVTPFAAQGAAMAIEDAAALAEALD- 327

Query: 346 WGVEGLLSALEEYQTVRLP 364
              +   + L+ + +VR  
Sbjct: 328 --SDDQSAGLKRFDSVRKE 344

Length = 400

>gnl|CDD|181262 PRK08163, PRK08163, salicylate hydroxylase; Provisional

 Score = 64.7 bits (158), Expect = 2e-11
 Identities = 56/203 (27%), Positives = 81/203 (39%), Gaps = 24/203 (11%)

Query: 4   KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQS 63
            +    +IVGG I G++ A AL R G  V +LE+A         GAG+ L   A   + +
Sbjct: 2   TKVTPVLIVGGGIGGLAAALALARQGIKVKLLEQA---AEIGEIGAGIQLGPNAFSALDA 58

Query: 64  WLNGRPHLLHLATVPLTIDQNQATDNAKVTRTLARDDNFNFRAA--------HWADLHGL 115
            L         A     +    A D  +V R         FRA         H AD+H  
Sbjct: 59  -LGVGEAARQRAVFTDHLTMMDAVDAEEVVRIPTGQA---FRARFGNPYAVIHRADIHLS 114

Query: 116 LYNAL--PPEIFLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSI 173
           L  A+   P +  R   ++   I +    VTV     Q        G+ L+  DG  S +
Sbjct: 115 LLEAVLDHPLVEFRTSTHVV-GIEQDGDGVTV---FDQQGNR--WTGDALIGCDGVKSVV 168

Query: 174 RQSFLSDFKLRYSGYCAWRGVLD 196
           RQS + D   R +G+  +R V+D
Sbjct: 169 RQSLVGD-APRVTGHVVYRAVID 190

Length = 396

>gnl|CDD|132263 TIGR03219, salicylate_mono, salicylate 1-monooxygenase

 Score = 62.9 bits (153), Expect = 9e-11
 Identities = 98/388 (25%), Positives = 156/388 (40%), Gaps = 39/388 (10%)

Query: 11  IVGGSIAGISCAHALLR-AGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRP 69
           I+GG IAG++ A  L + +  +V + E A   P     GAG+     A R I     G  
Sbjct: 5   IIGGGIAGVALALNLCKHSHLNVQLFEAA---PAFGEVGAGVSFGANAVRAIVGLGLGEA 61

Query: 70  HLLHLATVP-----LTIDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI 124
           +     + P     +  +    +D + +  T+A        + H AD    L   LP  I
Sbjct: 62  YTQVADSTPAPWQDIWFEWRNGSDASYLGATIA--PGVGQSSVHRADFLDALLKHLPEGI 119

Query: 125 FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSIRQSFLSDFKL- 183
              G +     I E    V V    L TD   E + +LL+ ADG  S++R   L      
Sbjct: 120 ASFGKRATQ--IEEQAEEVQV----LFTDGT-EYRCDLLIGADGIKSALRDYVLQGQGQA 172

Query: 184 ----RYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELLNKR 239
               R+SG CA+RG++D   + ++    G+     D+ + +Y  L    H + + +   R
Sbjct: 173 PVRPRFSGTCAYRGLVDSLQLREAYRAAGLDEHLVDVPQ-MY--LGLDGHILTFPVRQGR 229

Query: 240 L-NWVWYIN---QPEPIMKGNSVTMR-VSNDMIKNMHEEAEKVWLPEFVKVIKET-KEPF 293
           L N V +I+   QP+P    ++  +R  +   + +           +  + + E    P 
Sbjct: 230 LINVVAFISDRSQPKPTWPSDTPWVREATQREMLDAFAGWG-----DAARALLECIPAPT 284

Query: 294 INAMYDCDPLKQIFWSNVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLE--KWGVEGL 351
           + A++D   L       V LIGDAAH   PH        + DA  L + L   +     L
Sbjct: 285 LWALHDLAELPGYVHGRVALIGDAAHAMLPHQGAGAGQGLEDAYFLARLLGDTELEAGDL 344

Query: 352 LSALEEYQTVRLPVTSKQVLHSRRLGRI 379
            + LE Y  VR P   +    SR  G +
Sbjct: 345 PALLEAYDDVRRPRACRVQRTSREAGEL 372

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway. Length = 414

>gnl|CDD|181262 PRK08163, PRK08163, salicylate hydroxylase; Provisional

 Score = 60.1 bits (146), Expect = 6e-10
 Identities = 34/86 (39%), Positives = 53/86 (61%), Gaps = 5/86 (5%)

Query: 296 AMYDCDPLKQIFWSN--VVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLS 353
           A  D +P+ +  WS   V L+GDAAHP T +  +   M++ DA+ LGK+LE    +   +
Sbjct: 273 ATADREPVAK--WSTGRVTLLGDAAHPMTQYMAQGACMALEDAVTLGKALEGCDGD-AEA 329

Query: 354 ALEEYQTVRLPVTSKQVLHSRRLGRI 379
           A   Y++VR+P T++ VL +R +GRI
Sbjct: 330 AFALYESVRIPRTARVVLSAREMGRI 355

Length = 396

>gnl|CDD|178515 PLN02927, PLN02927, antheraxanthin epoxidase/zeaxanthin epoxidase

 Score = 57.8 bits (139), Expect = 6e-09
 Identities = 98/401 (24%), Positives = 159/401 (39%), Gaps = 73/401 (18%)

Query: 2   EKKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP---------PTGSPTGAGLG 52
           EKK+K + ++ GG I G+  A A  + G+DV+V EK             P    + A   
Sbjct: 77  EKKKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDLSAIRGEGKYRGPIQIQSNALAA 136

Query: 53  LD----RPAQRIIQSW------LNGRPHLLHLATVPLTIDQ--NQATDNAKVTRTLARDD 100
           L+      A++++++       +NG    +   +  +  D     A+    VTR ++R  
Sbjct: 137 LEAIDIDVAEQVMEAGCITGDRINGLVDGIS-GSWYVKFDTFTPAASRGLPVTRVISR-- 193

Query: 101 NFNFRAAHWADLHGLLYNALPPEIFLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKG 160
                      L  +L  A+  ++       + F  S  K TV     VL+  +  E  G
Sbjct: 194 ---------MTLQQILARAVGEDVIRNESNVVDFEDSGDKVTV-----VLENGQRYE--G 237

Query: 161 NLLVAADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCL 220
           +LLV ADG  S +R +     +  YSGY  + G+ DF     ++I     RV+  LG   
Sbjct: 238 DLLVGADGIWSKVRNNLFGRSEATYSGYTCYTGIADFI---PADIESVGYRVF--LGHKQ 292

Query: 221 YF---DLASGTHSVFYELLNKRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKV 277
           YF   D+  G                WY    EP    ++      N M K + E  +  
Sbjct: 293 YFVSSDVGGGKMQ-------------WYAFHEEPAGGADA-----PNGMKKRLFEIFDG- 333

Query: 278 WLPEFVKVIKETKEPFI--NAMYDCDPLKQIFWSNVVLIGDAAHPTTPHGLRSTNMSILD 335
           W    + ++  T+E  I    +YD  P        V L+GD+ H   P+  +   M+I D
Sbjct: 334 WCDNVLDLLHATEEDAILRRDIYDRSPGFTWGKGRVTLLGDSIHAMQPNMGQGGCMAIED 393

Query: 336 AMVLGKSLEKWGVEGLLSALEEYQTVRLPVTSKQVLHSRRL 376
           +  L   L+    E    ++E    V +  + K+   SRRL
Sbjct: 394 SFQLALELD----EAWKQSVETNTPVDVVSSLKRYEESRRL 430

Length = 668

>gnl|CDD|235874 PRK06847, PRK06847, hypothetical protein; Provisional

 Score = 53.3 bits (129), Expect = 9e-08
 Identities = 31/70 (44%), Positives = 39/70 (55%), Gaps = 4/70 (5%)

Query: 311 VVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWG-VEGLLSALEEYQTVRLPVTSKQ 369
           VVLIGDAAH TTPH  +   M+I DA+VL + L +   +E    AL+ Y   R       
Sbjct: 284 VVLIGDAAHATTPHLAQGAGMAIEDAIVLAEELARHDSLEA---ALQAYYARRWERCRMV 340

Query: 370 VLHSRRLGRI 379
           V  S R+GRI
Sbjct: 341 VEASARIGRI 350

Length = 375

>gnl|CDD|223717 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion]

 Score = 53.2 bits (128), Expect = 1e-07
 Identities = 77/401 (19%), Positives = 132/401 (32%), Gaps = 98/401 (24%)

Query: 9   AVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLG--------LDRPAQRI 60
            VIVG   AG S A  L +AG DV+VLEK   P  G+    G G        L       
Sbjct: 6   VVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEP--GAKPCCGGGLSPRALEELIPDFDEE 63

Query: 61  IQSWLNGRPHLLHLATVPLTIDQNQA--TDNAKVTRTLARDDNFNFRAAHW-ADLHGLLY 117
           I+  + G         V + +   +    D AK  + LA       RA    A+L+    
Sbjct: 64  IERKVTGARIYFPGEKVAIEVPVGEGYIVDRAKFDKWLAE------RAEEAGAELY---- 113

Query: 118 NALPPEIFLRGHQYLSFCISEVKTTVTV------KAKVLQTDEVIEIKGNLLVAADGCLS 171
                                  T VT          V       E++  +++ ADG  S
Sbjct: 114 ---------------------PGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNS 152

Query: 172 SIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSV 231
           ++ +      +                       +K +  V PD G             +
Sbjct: 153 ALARKLGLKDRKPEDYAIG---------------VKEVIEV-PDDGDVE--------EFL 188

Query: 232 FYELLNKRLNWVWYINQPEPI----------MKGNSVTMRVSNDMIKNMHEEAEKVWLPE 281
           +  L      + W      P+          +  +  ++    ++++   E      L  
Sbjct: 189 YGPLDVGPGGYGWIF----PLGDGHANVGIGVLLDDPSLSPFLELLERFKEHPAIRKLLL 244

Query: 282 FVKVIKETKEPFINAMYDCDPLKQIFWSNVVLIGDAA---HPTTPHGLRSTNMSILDAMV 338
             K+++              PL       V+L+GDAA   +P T  G+R    +I    +
Sbjct: 245 GGKILEYAAGGIPEGGPASRPL---VGDGVLLVGDAAGFVNPLTGEGIRY---AIKSGKL 298

Query: 339 LGKSLEKWGVEGLLSALEEYQTVRLPVTSKQVLHSRRLGRI 379
             +++ +  +EG   AL EY+ +     +++ L S RL ++
Sbjct: 299 AAEAIAE-ALEGGEEALAEYERLLRKSLAREDLKSLRLLKL 338

Length = 396

>gnl|CDD|216400 pfam01266, DAO, FAD dependent oxidoreductase

 Score = 50.4 bits (121), Expect = 4e-07
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 2/46 (4%)

Query: 8  KAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGL 53
            V++GG I G+S A+ L R G  V +LE+ G   +G+ +G   GL
Sbjct: 1  DVVVIGGGIVGLSTAYELARRGLSVTLLER-GDLASGA-SGRNAGL 44

This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1. Length = 234

>gnl|CDD|223737 COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

 Score = 50.3 bits (120), Expect = 1e-06
 Identities = 22/62 (35%), Positives = 26/62 (41%), Gaps = 2/62 (3%)

Query: 8  KAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNG 67
            VI+GG I G+S A+ L   G DV VLE  G    G+  G   G            L  
Sbjct: 6  DVVIIGGGIVGLSAAYYLAERGADVTVLEA-GEAGGGA-AGRNAGGILAPWASPGGELEV 63

Query: 68 RP 69
          RP
Sbjct: 64 RP 65

Length = 387

>gnl|CDD|205628 pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-like domain

 Score = 44.4 bits (106), Expect = 3e-06
 Identities = 13/31 (41%), Positives = 19/31 (61%)

Query: 11 IVGGSIAGISCAHALLRAGWDVVVLEKAGGP 41
          IVG  ++G+  A+ L + G DV+VLEK    
Sbjct: 1  IVGAGLSGLVAAYLLAKRGKDVLVLEKRDRI 31

Length = 66

>gnl|CDD|234978 PRK01747, mnmC, bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

 Score = 45.6 bits (109), Expect = 4e-05
 Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 3/45 (6%)

Query: 8   KAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPT---GSPTGA 49
            A I+GG IAG + A AL R GW V + E    P     G+  GA
Sbjct: 262 DAAIIGGGIAGAALALALARRGWQVTLYEADEAPAQGASGNRQGA 306

Length = 662

>gnl|CDD|216176 pfam00890, FAD_binding_2, FAD binding domain

 Score = 44.6 bits (106), Expect = 7e-05
 Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 7/60 (11%)

Query: 10 VIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPT-----GAGLGLDRPAQRIIQSW 64
          V++G  +AG++ A     AG  V V+EK  G P G  T     G       P    I S 
Sbjct: 3  VVIGSGLAGLAAALEAAEAGLKVAVVEK--GQPFGGATAWSSGGIDALGTPPQGAGIDSP 60

This family includes members that bind FAD. This family includes the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. Length = 401

>gnl|CDD|224154 COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 44.3 bits (105), Expect = 9e-05
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 3/36 (8%)

Query: 8  KAVIVGGSIAGISCAHALLRAGWDVVVLEKA---GG 40
            V++G  + G++ A  L RAG  V VLEK    GG
Sbjct: 5  DVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGG 40

Length = 487

>gnl|CDD|236001 PRK07364, PRK07364, 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 43/176 (24%), Positives = 69/176 (39%), Gaps = 20/176 (11%)

Query: 10  VIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQS---WLN 66
            IVGG I G++ A AL  +G  + ++E A      +  G    L   + RI +    W  
Sbjct: 22  AIVGGGIVGLTLAAALKDSGLRIALIE-AQPAEAAAAKGQAYALSLLSARIFEGIGVWEK 80

Query: 67  GRPHLLHLATVPLTIDQNQATDNAKVTRTLARD---DNFNFRAAHWADLHGLLYNALP-- 121
             P +     + L+       D   V +    D   +   +   H   L  L    L   
Sbjct: 81  ILPQIGKFRQIRLS-----DADYPGVVKFQPTDLGTEALGYVGEHQVLLEAL-QEFLQSC 134

Query: 122 PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSIRQS 176
           P I +L   + +S    +   TVT++       +   ++  L+VAADG  S IRQ+
Sbjct: 135 PNITWLCPAEVVSVEYQQDAATVTLE----IEGKQQTLQSKLVVAADGARSPIRQA 186

Length = 415

>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 14/33 (42%), Positives = 20/33 (60%)

Query: 10 VIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP 42
          VI+GG  AG++ A  L R G  V ++E+ GG  
Sbjct: 3  VIIGGGPAGLAAAIRLARLGLKVALIEREGGTC 35

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283

>gnl|CDD|225915 COG3380, COG3380, Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 16/31 (51%), Positives = 20/31 (64%)

Query: 10 VIVGGSIAGISCAHALLRAGWDVVVLEKAGG 40
           IVG  IAG++ A+AL  AG +V V EK  G
Sbjct: 5  AIVGAGIAGLAAAYALREAGREVTVFEKGRG 35

Length = 331

>gnl|CDD|236967 PRK11749, PRK11749, dihydropyrimidine dehydrogenase subunit A; Provisional

 Score = 43.2 bits (103), Expect = 2e-04
 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 4/42 (9%)

Query: 3   KKEKGKAV-IVGGSIAGISCAHALLRAGWDVVV---LEKAGG 40
             + GK V ++G   AG++ AH L R G+DV +    +KAGG
Sbjct: 136 APKTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGG 177

Length = 457

>gnl|CDD|235728 PRK06184, PRK06184, hypothetical protein; Provisional

 Score = 43.0 bits (102), Expect = 2e-04
 Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 13/87 (14%)

Query: 310 NVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLL-----SALEEYQTVRLP 364
            V L GDAAH   P G +  N S+ DA  LG     W +  +L     + L+ Y+  R P
Sbjct: 282 RVFLAGDAAHVHPPAGGQGLNTSVQDAYNLG-----WKLAAVLAGAPEALLDTYEEERRP 336

Query: 365 VTSKQVLH--SRRLGRIKQGLALPDRE 389
           V +  VL   +  L  IK+G     R+
Sbjct: 337 VAA-AVLGLSTELLDAIKRGDMRRGRD 362

Length = 502

>gnl|CDD|136171 PRK07045, PRK07045, putative monooxygenase; Reviewed

 Score = 42.2 bits (99), Expect = 3e-04
 Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 310 NVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKW--GVEGLLSALEEYQTVRLPV 365
           NVVL+GDAAH   P   +  N++I DA  LG  L+    G   L  ALE ++ +R PV
Sbjct: 286 NVVLLGDAAHSIHPITGQGMNLAIEDAGELGACLDLHLSGQIALADALERFERIRRPV 343

Length = 388

>gnl|CDD|235874 PRK06847, PRK06847, hypothetical protein; Provisional

 Score = 41.8 bits (99), Expect = 5e-04
 Identities = 23/52 (44%), Positives = 28/52 (53%), Gaps = 3/52 (5%)

Query: 8  KAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQR 59
          K +IVGG I G+S A AL RAG  V ++E     P     GAG+ L   A R
Sbjct: 6  KVLIVGGGIGGLSAAIALRRAGIAVDLVEID---PEWRVYGAGITLQGNALR 54

Length = 375

>gnl|CDD|237213 PRK12810, gltD, glutamate synthase subunit beta; Reviewed

 Score = 41.7 bits (99), Expect = 6e-04
 Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 4/38 (10%)

Query: 7   GKAV-IVGGSIAGISCAHALLRAGWDVVVLEKA---GG 40
           GK V +VG   AG++ A  L RAG  V V E+A   GG
Sbjct: 143 GKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGG 180

Length = 471

>gnl|CDD|236203 PRK08255, PRK08255, salicylyl-CoA 5-hydroxylase; Reviewed

 Score = 41.1 bits (97), Expect = 0.001
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 11/65 (16%)

Query: 309 SNVVLIGDAAHPTTPH-----GLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTVRL 363
             VVL+GDAAH  T H     G   T +++ DA+ L + L +     L +AL  Y+  R 
Sbjct: 269 VPVVLMGDAAH--TAHFSIGSG---TKLALEDAIELARCLHEHP-GDLPAALAAYEEERR 322

Query: 364 PVTSK 368
               +
Sbjct: 323 VEVLR 327

Length = 765

>gnl|CDD|233669 TIGR01984, UbiH, 2-polyprenyl-6-methoxyphenol 4-hydroxylase

 Score = 40.8 bits (96), Expect = 0.001
 Identities = 44/179 (24%), Positives = 70/179 (39%), Gaps = 24/179 (13%)

Query: 10  VIVGGSIAGISCAHALLR-AGWDVVVLEK--AGGPPTGSPTGAGLGLDRPAQRI---IQS 63
           +IVGG + G+S A AL R     + ++E         G    + L L   +++I   +  
Sbjct: 3   IIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARS-LALSYGSKQILEKLGL 61

Query: 64  WLNGRPHLLHLATVPLTIDQNQATDNAKVTRTLARDDNFNFRA----AHWADLHGLLYNA 119
           W    P L   AT  L I     +D      T  R   F   A       ADL   L + 
Sbjct: 62  W----PKLAPFATPILDI---HVSDQGHFGATHLRASEFGLPALGYVVELADLGQALLSR 114

Query: 120 LPPEIFLRGHQYLSFCISEVKTTVTVKAKV-LQTDEVIEIKGNLLVAADGCLSSIRQSF 177
           L     ++      +C +  K  +  +  V +  D   +++  LL+AADG  S +R+  
Sbjct: 115 LALLTNIQ-----LYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAADGANSKVRELL 168

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 382

>gnl|CDD|235977 PRK07233, PRK07233, hypothetical protein; Provisional

 Score = 40.6 bits (96), Expect = 0.001
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 3/36 (8%)

Query: 8  KAVIVGGSIAGISCAHALLRAGWDVVVLEKA---GG 40
          K  IVGG IAG++ A+ L + G +V V E     GG
Sbjct: 1  KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGG 36

Length = 434

>gnl|CDD|233988 TIGR02734, crtI_fam, phytoene desaturase

 Score = 40.0 bits (94), Expect = 0.002
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 9  AVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP 41
          AV++G    G++ A  L  AG  V V+E+   P
Sbjct: 1  AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKP 33

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 502

>gnl|CDD|233671 TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

 Score = 39.1 bits (92), Expect = 0.003
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 12/62 (19%)

Query: 311 VVLIGDAA---HPTTPHGLRSTNMSILDAMVLGKSLEKWGVE-----GLLSALEEYQTVR 362
           + LIGDAA   HP    GL   N+ + D   L + LE          G    L+ Y+  R
Sbjct: 280 LALIGDAAHTIHPLAGQGL---NLGLRDVAALAEVLED-ARRRGEDIGSPRVLQRYERRR 335

Query: 363 LP 364
             
Sbjct: 336 RF 337

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4,) and UbiF (which acts at position 5,). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) making it difficult to ascribe a specific activity to each one. Eukaryotes appear to have only a single homolog in this subfamily (COQ6,) which complements UbiH, but also possess a non-orthologous gene, COQ7 which complements UbiF [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 387

>gnl|CDD|224171 COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and conversion]

 Score = 39.2 bits (92), Expect = 0.004
 Identities = 13/38 (34%), Positives = 20/38 (52%)

Query: 4   KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP 41
           + K KAV++GG + G+  A  L   G +V V+  A   
Sbjct: 143 RNKKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTL 180

Length = 793

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	426
PRK07236	386	hypothetical protein; Provisional	100.0
PRK07538	413	hypothetical protein; Provisional	100.0
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	100.0
PRK08294	634	phenol 2-monooxygenase; Provisional	100.0
PRK06753	373	hypothetical protein; Provisional	100.0
PRK06475	400	salicylate hydroxylase; Provisional	100.0
PRK08163	396	salicylate hydroxylase; Provisional	100.0
PRK07588	391	hypothetical protein; Provisional	100.0
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	100.0
PRK05868	372	hypothetical protein; Validated	100.0
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	100.0
PRK07045	388	putative monooxygenase; Reviewed	100.0
PRK08013	400	oxidoreductase; Provisional	100.0
PRK06847	375	hypothetical protein; Provisional	100.0
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	100.0
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	100.0
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	100.0
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	100.0
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	100.0
PRK06184	502	hypothetical protein; Provisional	100.0
PRK06126	545	hypothetical protein; Provisional	100.0
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	100.0
PLN02985	514	squalene monooxygenase	100.0
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	100.0
PRK08244	493	hypothetical protein; Provisional	100.0
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	100.0
KOG2614	420	consensus Kynurenine 3-monooxygenase and related f	100.0
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	100.0
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	100.0
PRK09126	392	hypothetical protein; Provisional	100.0
PTZ00367	567	squalene epoxidase; Provisional	100.0
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	100.0
PRK07190	487	hypothetical protein; Provisional	100.0
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	100.0
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	100.0
PRK06996	398	hypothetical protein; Provisional	100.0
PRK08132	547	FAD-dependent oxidoreductase; Provisional	100.0
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	100.0
PRK06185	407	hypothetical protein; Provisional	100.0
PRK06834	488	hypothetical protein; Provisional	100.0
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	100.0
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	100.0
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	100.0
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	100.0
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	100.0
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	100.0
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	100.0
PRK11445	351	putative oxidoreductase; Provisional	100.0
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	100.0
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	99.97
KOG1298	509	consensus Squalene monooxygenase [Lipid transport	99.97
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	99.97
PRK10015	429	oxidoreductase; Provisional	99.96
PRK10157	428	putative oxidoreductase FixC; Provisional	99.96
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	99.94
KOG3855	481	consensus Monooxygenase involved in coenzyme Q (ub	99.92
PLN02697	529	lycopene epsilon cyclase	99.92
PLN02463	447	lycopene beta cyclase	99.91
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	99.9
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	99.9
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	99.83
PF08491	276	SE: Squalene epoxidase; InterPro: IPR013698 This d	99.82
KOG2415	621	consensus Electron transfer flavoprotein ubiquinon	99.75
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	99.6
COG2081	408	Predicted flavoproteins [General function predicti	99.55
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	99.53
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	99.49
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	99.44
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	99.34
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	99.33
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	99.33
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	99.32
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	99.29
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	99.26
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	99.26
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	99.24
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	99.23
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	99.2
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	99.19
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	99.18
COG0579	429	Predicted dehydrogenase [General function predicti	99.17
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	99.17
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	99.12
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	99.11
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	99.1
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	99.08
PLN02661	357	Putative thiazole synthesis	99.08
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	99.08
PRK07804	541	L-aspartate oxidase; Provisional	99.07
PLN02464	627	glycerol-3-phosphate dehydrogenase	99.06
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	99.05
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	99.04
PRK08275	554	putative oxidoreductase; Provisional	99.04
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	99.04
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	99.03
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	99.03
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	99.03
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	99.02
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	99.02
PRK08274	466	tricarballylate dehydrogenase; Validated	99.02
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	99.02
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	99.01
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	99.01
PRK11728	393	hydroxyglutarate oxidase; Provisional	99.01
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	99.01
PRK13339	497	malate:quinone oxidoreductase; Reviewed	99.01
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	99.0
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	98.99
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	98.99
PRK05257	494	malate:quinone oxidoreductase; Validated	98.99
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	98.99
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	98.98
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	98.97
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	98.97
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	98.97
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	98.96
PRK09077	536	L-aspartate oxidase; Provisional	98.94
TIGR00275	400	flavoprotein, HI0933 family. The model when search	98.94
PRK07121	492	hypothetical protein; Validated	98.94
PRK08071	510	L-aspartate oxidase; Provisional	98.94
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	98.92
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	98.92
PLN02815	594	L-aspartate oxidase	98.9
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	98.9
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	98.89
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	98.88
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	98.88
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	98.87
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	98.87
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	98.87
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	98.87
PRK06175	433	L-aspartate oxidase; Provisional	98.86
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	98.85
PRK12416	463	protoporphyrinogen oxidase; Provisional	98.84
PTZ00383	497	malate:quinone oxidoreductase; Provisional	98.83
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	98.83
PRK08401	466	L-aspartate oxidase; Provisional	98.82
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	98.82
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	98.8
PRK14694	468	putative mercuric reductase; Provisional	98.79
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	98.78
PLN02612	567	phytoene desaturase	98.78
KOG2820	399	consensus FAD-dependent oxidoreductase [General fu	98.76
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	98.75
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	98.75
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.73
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	98.73
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	98.72
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.72
PRK07395	553	L-aspartate oxidase; Provisional	98.71
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	98.71
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.7
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	98.7
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	98.7
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	98.7
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	98.69
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	98.68
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	98.67
PRK12842	574	putative succinate dehydrogenase; Reviewed	98.67
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	98.67
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	98.66
PRK10262	321	thioredoxin reductase; Provisional	98.66
PRK12839	572	hypothetical protein; Provisional	98.66
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	98.66
PRK09897	534	hypothetical protein; Provisional	98.65
PRK06370	463	mercuric reductase; Validated	98.64
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	98.64
PLN02507	499	glutathione reductase	98.63
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	98.62
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	98.61
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	98.61
PRK07512	513	L-aspartate oxidase; Provisional	98.6
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	98.6
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	98.57
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	98.56
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	98.56
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.55
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	98.55
PRK06116	450	glutathione reductase; Validated	98.54
PTZ00058	561	glutathione reductase; Provisional	98.53
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.53
PRK13748	561	putative mercuric reductase; Provisional	98.53
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	98.53
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	98.52
KOG2853	509	consensus Possible oxidoreductase [General functio	98.51
PRK14727	479	putative mercuric reductase; Provisional	98.49
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	98.49
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	98.45
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	98.45
PRK12779	944	putative bifunctional glutamate synthase subunit b	98.44
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	98.41
KOG2404	477	consensus Fumarate reductase, flavoprotein subunit	98.41
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	98.41
KOG0029	501	consensus Amine oxidase [Secondary metabolites bio	98.39
PTZ00052	499	thioredoxin reductase; Provisional	98.39
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	98.38
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	98.38
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	98.35
PRK07845	466	flavoprotein disulfide reductase; Reviewed	98.35
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	98.35
PRK07208	479	hypothetical protein; Provisional	98.34
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	98.31
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	98.31
KOG2665	453	consensus Predicted FAD-dependent oxidoreductase [	98.31
PRK13512	438	coenzyme A disulfide reductase; Provisional	98.28
PRK09564	444	coenzyme A disulfide reductase; Reviewed	98.25
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	98.25
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	98.25
PLN02546	558	glutathione reductase	98.24
KOG0042	680	consensus Glycerol-3-phosphate dehydrogenase [Ener	98.2
PTZ00153	659	lipoamide dehydrogenase; Provisional	98.18
PRK11883	451	protoporphyrinogen oxidase; Reviewed	98.17
PRK07233	434	hypothetical protein; Provisional	98.17
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	98.16
COG3349	485	Uncharacterized conserved protein [Function unknow	98.16
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	98.15
KOG2844	856	consensus Dimethylglycine dehydrogenase precursor	98.14
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	98.14
PLN02568	539	polyamine oxidase	98.13
PLN02576	496	protoporphyrinogen oxidase	98.13
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	98.11
PLN02268	435	probable polyamine oxidase	98.11
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	98.11
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	98.09
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	98.09
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	98.09
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	98.06
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	98.05
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	98.05
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	98.04
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	98.04
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	98.0
PTZ00188	506	adrenodoxin reductase; Provisional	98.0
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	98.0
PRK12831	464	putative oxidoreductase; Provisional	98.0
PLN02852	491	ferredoxin-NADP+ reductase	98.0
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	97.99
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	97.98
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	97.98
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	97.98
PLN02676	487	polyamine oxidase	97.97
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	97.97
TIGR02053	463	MerA mercuric reductase. This model represents the	97.97
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	97.96
PRK07846	451	mycothione reductase; Reviewed	97.95
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	97.95
PLN02487	569	zeta-carotene desaturase	97.94
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	97.94
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	97.92
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	97.92
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	97.92
PRK06567	1028	putative bifunctional glutamate synthase subunit b	97.91
PRK07846	451	mycothione reductase; Reviewed	97.9
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	97.89
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	97.89
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	97.89
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	97.89
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	97.88
COG2907	447	Predicted NAD/FAD-binding protein [General functio	97.87
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	97.86
PRK14989	847	nitrite reductase subunit NirD; Provisional	97.85
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	97.85
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	97.85
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	97.85
TIGR02053	463	MerA mercuric reductase. This model represents the	97.84
PLN02529	738	lysine-specific histone demethylase 1	97.83
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	97.83
PRK13977	576	myosin-cross-reactive antigen; Provisional	97.82
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	97.82
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	97.81
PRK06370	463	mercuric reductase; Validated	97.81
PLN02328	808	lysine-specific histone demethylase 1 homolog	97.81
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	97.8
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	97.8
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	97.78
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	97.78
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	97.78
PRK02106	560	choline dehydrogenase; Validated	97.78
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	97.78
KOG2960	328	consensus Protein involved in thiamine biosynthesi	97.77
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	97.76
PRK12814	652	putative NADPH-dependent glutamate synthase small	97.76
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	97.76
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	97.75
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	97.74
PRK06116	450	glutathione reductase; Validated	97.73
COG3573	552	Predicted oxidoreductase [General function predict	97.71
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	97.7
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	97.69
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	97.69
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	97.68
PRK14989	847	nitrite reductase subunit NirD; Provisional	97.66
PRK07845	466	flavoprotein disulfide reductase; Reviewed	97.66
PLN02507	499	glutathione reductase	97.66
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	97.65
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	97.65
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	97.64
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	97.64
KOG0685	498	consensus Flavin-containing amine oxidase [Coenzym	97.62
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	97.61
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	97.56
PRK12770	352	putative glutamate synthase subunit beta; Provisio	97.55
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	97.55
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	97.54
PTZ00153	659	lipoamide dehydrogenase; Provisional	97.52
PRK14694	468	putative mercuric reductase; Provisional	97.52
KOG2852	380	consensus Possible oxidoreductase [General functio	97.51
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	97.51
KOG4716	503	consensus Thioredoxin reductase [Posttranslational	97.5
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	97.48
PLN03000	881	amine oxidase	97.48
PRK13512	438	coenzyme A disulfide reductase; Provisional	97.47
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	97.47
KOG1276	491	consensus Protoporphyrinogen oxidase [Coenzyme tra	97.45
PRK09564	444	coenzyme A disulfide reductase; Reviewed	97.44
PTZ00052	499	thioredoxin reductase; Provisional	97.44
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	97.43
PRK14727	479	putative mercuric reductase; Provisional	97.4
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	97.39
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	97.38
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	97.37
PLN02976	1713	amine oxidase	97.36
PTZ00058	561	glutathione reductase; Provisional	97.36
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	97.35
PRK13984	604	putative oxidoreductase; Provisional	97.34
KOG3851	446	consensus Sulfide:quinone oxidoreductase/flavo-bin	97.33
PRK13748	561	putative mercuric reductase; Provisional	97.3
KOG3923	342	consensus D-aspartate oxidase [Amino acid transpor	97.3
KOG1800	468	consensus Ferredoxin/adrenodoxin reductase [Nucleo	97.3
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	97.26
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	97.21
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	97.2
PRK10262	321	thioredoxin reductase; Provisional	97.19
PLN02785	587	Protein HOTHEAD	97.15
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	97.11
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	97.1
PLN02546	558	glutathione reductase	97.08
PRK12770	352	putative glutamate synthase subunit beta; Provisio	97.04
KOG2311	679	consensus NAD/FAD-utilizing protein possibly invol	97.04
PRK12831	464	putative oxidoreductase; Provisional	97.02
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	97.0
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	96.98
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	96.95
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	96.93
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	96.92
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	96.74
PRK05675	570	sdhA succinate dehydrogenase flavoprotein subunit;	96.66
KOG4254	561	consensus Phytoene desaturase [Coenzyme transport	96.62
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	96.55
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	96.48
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	96.34
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	96.33
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	96.33
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	96.31
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	96.29
COG0569	225	TrkA K+ transport systems, NAD-binding component [	96.26
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.25
PRK12779	944	putative bifunctional glutamate synthase subunit b	96.22
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	96.2
PRK06719	157	precorrin-2 dehydrogenase; Validated	96.18
PRK12814	652	putative NADPH-dependent glutamate synthase small	96.16
TIGR02352	337	thiamin_ThiO glycine oxidase ThiO. This family con	96.13
KOG1238	623	consensus Glucose dehydrogenase/choline dehydrogen	96.1
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.08
TIGR03377	516	glycerol3P_GlpA glycerol-3-phosphate dehydrogenase	96.07
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.03
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.02
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.0
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	95.98
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	95.85
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	95.83
TIGR03862	376	flavo_PP4765 uncharacterized flavoprotein, PP_4765	95.82
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	95.73
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	95.69
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.68
TIGR03197	381	MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri	95.67
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	95.67
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	95.67
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	95.64
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.63
PTZ00082	321	L-lactate dehydrogenase; Provisional	95.53
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	95.5
PF00996	438	GDI: GDP dissociation inhibitor; InterPro: IPR0182	95.44
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	95.44
KOG2495	491	consensus NADH-dehydrogenase (ubiquinone) [Energy	95.43
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	95.4
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	95.38
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	95.36
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	95.32
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	95.3
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	95.19
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	95.18
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.17
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	95.16
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.13
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	95.13
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	95.1
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	95.04
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.98
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	94.95
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	94.91
PF13478	136	XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2	94.89
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	94.87
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	94.84
PRK04148	134	hypothetical protein; Provisional	94.78
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	94.74
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	94.7
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	94.7
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	94.68
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	94.68
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	94.64
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.62
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	94.55
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	94.5
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	94.42
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	94.4
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	94.37
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	94.35
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.31
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	94.28
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	94.25
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	94.21
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	94.19
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	94.19
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	94.14
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	94.14
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	94.08
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	94.06
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	94.06
PRK07417	279	arogenate dehydrogenase; Reviewed	94.03
PRK07326	237	short chain dehydrogenase; Provisional	93.97
PRK03806	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.97
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	93.96
TIGR02964	246	xanthine_xdhC xanthine dehydrogenase accessory pro	93.85
PRK15116	268	sulfur acceptor protein CsdL; Provisional	93.81
PRK01368	454	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.75
PRK06223	307	malate dehydrogenase; Reviewed	93.75
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	93.74
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	93.73
COG5044	434	MRS6 RAB proteins geranylgeranyltransferase compon	93.68
PLN02852	491	ferredoxin-NADP+ reductase	93.62
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	93.54
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	93.48
PRK07233	434	hypothetical protein; Provisional	93.43
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	93.41
KOG2495	491	consensus NADH-dehydrogenase (ubiquinone) [Energy	93.38
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	93.3
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	93.28
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.28
PRK08264	238	short chain dehydrogenase; Validated	93.22
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	93.18
PRK08306	296	dipicolinate synthase subunit A; Reviewed	93.09
PRK07067	257	sorbitol dehydrogenase; Provisional	93.09
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.08
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	93.06
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	93.05
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	93.03
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	92.99
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	92.97
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.95
PLN02353	473	probable UDP-glucose 6-dehydrogenase	92.94
PRK07774	250	short chain dehydrogenase; Provisional	92.91
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	92.9
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.87
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	92.87
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	92.8
PTZ00117	319	malate dehydrogenase; Provisional	92.76
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	92.7
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	92.54
PRK09496	453	trkA potassium transporter peripheral membrane com	92.44
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	92.36
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	92.36
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.35
PLN02602	350	lactate dehydrogenase	92.32
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	92.24
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	92.23
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	92.19
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	92.12
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	92.11
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	92.09
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	92.06
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	92.04
PLN02487	569	zeta-carotene desaturase	92.03
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	91.99
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	91.97
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	91.96
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	91.9
PRK11730	715	fadB multifunctional fatty acid oxidation complex	91.85
PRK10669	558	putative cation:proton antiport protein; Provision	91.84
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	91.83
PRK13984	604	putative oxidoreductase; Provisional	91.79
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	91.78
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	91.77
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	91.76
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.68
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	91.62
PLN02256	304	arogenate dehydrogenase	91.59
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	91.59
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	91.58
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	91.57

>PRK07236 hypothetical protein; Provisional

Probab=100.00  E-value=1.2e-45  Score=355.37  Aligned_cols=356  Identities=29%  Similarity=0.475  Sum_probs=252.8

Q ss_pred             CCCCCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCccee
Q 014324            1 MEKKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLT   80 (426)
Q Consensus         1 m~~~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~   80 (426)
                      |+.|+.++|+||||||+||++|+.|+++|++|+||||.+.+..  ..|.++.+.|+++++|+++|+.  +.. ..+.+..
T Consensus         1 ~~~~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~--~~g~gi~l~~~~~~~l~~lg~~--~~~-~~~~~~~   75 (386)
T PRK07236          1 MTHMSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELD--GRGAGIVLQPELLRALAEAGVA--LPA-DIGVPSR   75 (386)
T ss_pred             CCCCCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcC--CCCceeEeCHHHHHHHHHcCCC--ccc-ccccCcc
Confidence            7788899999999999999999999999999999999976432  3667899999999999999883  322 2222221


Q ss_pred             eccccccccccccccccccCCCcchhccHHHHHHHHHhcCCCCeeEeeeeEEEEEEecCCceEEEEEEeccCCceEEEee
Q 014324           81 IDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEIFLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKG  160 (426)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~  160 (426)
                      .......+++.+..     ...+...+.+..+.+.|.+.+....++++++|++++.+  +..|+++   +++|++  ++|
T Consensus        76 ~~~~~~~~g~~~~~-----~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~--~~~v~v~---~~~g~~--~~a  143 (386)
T PRK07236         76 ERIYLDRDGRVVQR-----RPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQD--GDRVTAR---FADGRR--ETA  143 (386)
T ss_pred             ceEEEeCCCCEeec-----cCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEec--CCeEEEE---ECCCCE--EEe
Confidence            11111122321111     11122235678888888887754349999999999864  3457766   567765  899


Q ss_pred             cEEEeccCCchhhhhhhcCCCcccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEEEecCC--
Q 014324          161 NLLVAADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELLNK--  238 (426)
Q Consensus       161 d~vI~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  238 (426)
                      |+||+|||++|.+|+++.+...+.|.++..|++++.........     .   ........++.+++..++.||+++.  
T Consensus       144 d~vIgADG~~S~vR~~l~~~~~~~~~g~~~~~~~v~~~~~~~~~-----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (386)
T PRK07236        144 DLLVGADGGRSTVRAQLLPDVRPTYAGYVAWRGLVDEAALPPEA-----R---AALRDRFTFQLGPGSHILGYPVPGEDG  215 (386)
T ss_pred             CEEEECCCCCchHHHHhCCCCCCCcCCeEEEEEecchHHcCchh-----h---hhcccceEEEEcCCceEEEEECCCCCC
Confidence            99999999999999999877788899999999887543221110     0   0001123345577778888887642  


Q ss_pred             -------eeeEEEEEecCCCCc--------CCCcce-----eccCHHHHHHHHHHHhhcccHHHHHHhhhcCcceEeeee
Q 014324          239 -------RLNWVWYINQPEPIM--------KGNSVT-----MRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMY  298 (426)
Q Consensus       239 -------~~~~~~~~~~~~~~~--------~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (426)
                             ..+|.|+...+....        .+..+.     .....+.++++.+.....|.+.+.++++.......+.++
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (386)
T PRK07236        216 STEPGKRRYNWVWYRNAPAGEELDELLTDRDGTRRPFSVPPGALRDDVLAELRDDAAELLAPVFAELVEATAQPFVQAIF  295 (386)
T ss_pred             CcCCCCcEEEEEEEecCCCccchhhhcccCCCccccCCCCccccCHHHHHHHHHHHHHhcCHHHHHHHhhCcCchhhhhh
Confidence                   356777765543110        000010     011233444444433334888899988877655544444


Q ss_pred             ccCCCCccccccEEEeccccccCCCCCcchhhhhHHHHHHHHHHHHhhccccHHHHHHHHHHhhhhhHHHHHHHHHHhhh
Q 014324          299 DCDPLKQIFWSNVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTVRLPVTSKQVLHSRRLGR  378 (426)
Q Consensus       299 ~~~p~~~~~~~rv~LvGDAAh~~~P~~G~G~~~ai~Da~~La~~L~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~  378 (426)
                      .. ..++|..+|++|+|||||.|+|+.|||+|+||+||..|+++|.... .+.+.+|+.|+++|+++++.++..++.++.
T Consensus       296 ~~-~~~~~~~grv~LiGDAAH~~~P~~GqG~n~aieDA~~La~~L~~~~-~~~~~al~~Ye~~R~~r~~~~~~~s~~~~~  373 (386)
T PRK07236        296 DL-EVPRMAFGRVALLGDAAFVARPHTAAGVAKAAADAVALAEALAAAA-GDIDAALAAWEAERLAVGAAIVARGRRLGA  373 (386)
T ss_pred             cc-cCcccccCcEEEEecccccCCCcchhhHHHHHHHHHHHHHHHHhcc-cchHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            32 2467888999999999999999999999999999999999998753 457899999999999999999999999999


Q ss_pred             hhhcC
Q 014324          379 IKQGL  383 (426)
Q Consensus       379 ~~~~~  383 (426)
                      +++.+
T Consensus       374 ~~~~~  378 (386)
T PRK07236        374 RLQAQ  378 (386)
T ss_pred             HHHhc
Confidence            88776

>PRK07538 hypothetical protein; Provisional

Probab=100.00  E-value=2.1e-45  Score=356.80  Aligned_cols=379  Identities=23%  Similarity=0.302  Sum_probs=255.7

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccccc
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQA   86 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   86 (426)
                      +||+||||||+||++|+.|+++|++|+||||.+.+.   +.|.++.+.|+++++|+++|+  .+.+...+.+........
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~---~~g~gi~l~p~~~~~L~~lgl--~~~l~~~~~~~~~~~~~~   75 (413)
T PRK07538          1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELR---PLGVGINLLPHAVRELAELGL--LDALDAIGIRTRELAYFN   75 (413)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCccc---ccCcceeeCchHHHHHHHCCC--HHHHHhhCCCCcceEEEc
Confidence            489999999999999999999999999999998765   367899999999999999998  566665554322111112


Q ss_pred             cccccccccc---cccCCCcchhccHHHHHHHHHhcCCC--C-e-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEe
Q 014324           87 TDNAKVTRTL---ARDDNFNFRAAHWADLHGLLYNALPP--E-I-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIK  159 (426)
Q Consensus        87 ~~~~~~~~~~---~~~~~~~~~~~~r~~l~~~L~~~~~~--~-~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~  159 (426)
                      ..+..+....   ......+.+.++|..|++.|.+.+.+  + . |+++++|++++.+++  .+.+.+.+..+|+..+++
T Consensus        76 ~~g~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~--~~~~~~~~~~~g~~~~~~  153 (413)
T PRK07538         76 RHGQRIWSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDAD--VTVVFLGDRAGGDLVSVR  153 (413)
T ss_pred             CCCCEEeeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCC--ceEEEEeccCCCccceEE
Confidence            2233211111   11122344568999999999887632  4 4 999999999986544  355554333455555699


Q ss_pred             ecEEEeccCCchhhhhhhcCCC-cccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEEEecCC
Q 014324          160 GNLLVAADGCLSSIRQSFLSDF-KLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELLNK  238 (426)
Q Consensus       160 ~d~vI~AdG~~S~vR~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (426)
                      ||+||+|||.+|.+|+++.++. .+.+.+...|++.++.++...              +....+.-.++..+++||+.+.
T Consensus       154 adlvIgADG~~S~vR~~l~~~~~~~~~~g~~~~~~~~~~~~~~~--------------~~~~~~~g~~~~~~~~~p~~~~  219 (413)
T PRK07538        154 GDVLIGADGIHSAVRAQLYPDEGPPRWNGVMMWRGVTEAPPFLT--------------GRSMVMAGHLDGKLVVYPISEP  219 (413)
T ss_pred             eeEEEECCCCCHHHhhhhcCCCCCCcccceEEEEEeecCccccC--------------CCcEEEEcCCCCEEEEEECCCC
Confidence            9999999999999999997665 677888999998876542210              1111122123556778887653


Q ss_pred             -------eeeEEEEEecCCC-CcCCCcceeccCHHHHHHHHHHHhhcccH---HHHHHhhhcCcceEeeeeccCCCCccc
Q 014324          239 -------RLNWVWYINQPEP-IMKGNSVTMRVSNDMIKNMHEEAEKVWLP---EFVKVIKETKEPFINAMYDCDPLKQIF  307 (426)
Q Consensus       239 -------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~p~~~~~  307 (426)
                             .++|.+....+.. ......+..   ....++++. .+..|.+   .+.++++.......+++....|+++|.
T Consensus       220 ~~~~g~~~~~w~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~p~~~~~~~~~w~  295 (413)
T PRK07538        220 VDADGRQLINWVAEVRVDDAGAPRREDWNR---PGDLEDFLP-HFADWRFDWLDVPALIRAAEAIYEYPMVDRDPLPRWT  295 (413)
T ss_pred             cccCCceEEEEEEEEcCCccCCCcccccCC---ccCHHHHHH-HhcCCCCCcccHHHHHhcCcceeeccccccCCCCccc
Confidence                   3455554443321 001111111   122233332 2334543   255666655555566666677888999


Q ss_pred             cccEEEeccccccCCCCCcchhhhhHHHHHHHHHHHHhhccccHHHHHHHHHHhhhhhHHHHHHHHHHh-----hhhhhc
Q 014324          308 WSNVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTVRLPVTSKQVLHSRRL-----GRIKQG  382 (426)
Q Consensus       308 ~~rv~LvGDAAh~~~P~~G~G~~~ai~Da~~La~~L~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~-----~~~~~~  382 (426)
                      .+|++|||||||.|+|+.|||+|+||+||..|+++|...  .+.+++|+.|+++|++++..++..++..     ..++..
T Consensus       296 ~grv~LvGDAAH~~~P~~GqG~~~Ai~Da~~La~~L~~~--~~~~~aL~~Ye~~R~~~~~~~~~~s~~~~~~~~~~~~~~  373 (413)
T PRK07538        296 RGRVTLLGDAAHPMYPVGSNGASQAILDARALADALAAH--GDPEAALAAYEAERRPATAQIVLANRLNGPEGVLQLVEE  373 (413)
T ss_pred             CCcEEEEeeccCcCCCCCcccHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHhhHHHHHHHHHhhhcChHHHHHHHHh
Confidence            999999999999999999999999999999999999875  3588999999999999999999999984     455555


Q ss_pred             CCCCCCCCCCCCCCChhhhHHHhhccCCcccC
Q 014324          383 LALPDREPFNTKTASPQDCQELQQKTMPFFAD  414 (426)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (426)
                      ..+....... ++...+++..+.+. +.+..|
T Consensus       374 ~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~  403 (413)
T PRK07538        374 RAPGGFADID-DVISSAELEAIAAR-YKAAAG  403 (413)
T ss_pred             hCCCCccchh-hcCCHHHHHHHHHH-HHHhhC
Confidence            4322222122 24555566555543 334433

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=100.00  E-value=2.6e-45  Score=356.43  Aligned_cols=358  Identities=23%  Similarity=0.272  Sum_probs=253.2

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcC-CcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcce--eec-
Q 014324            7 GKAVIVGGSIAGISCAHALLRAG-WDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPL--TID-   82 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G-~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~-   82 (426)
                      ++|+||||||+||++|+.|+++| ++|+||||++.+.   ..|.++.+.|+++++|+++|+  .+.+.+.....  ... 
T Consensus         1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~---~~G~gi~l~~~~~~~L~~lg~--~~~~~~~~~~~~~~~~~   75 (414)
T TIGR03219         1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFG---EVGAGVSFGANAVRAIVGLGL--GEAYTQVADSTPAPWQD   75 (414)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCC---CCccceeeCccHHHHHHHcCC--hhHHHHHhcCCCccCcc
Confidence            47999999999999999999998 6999999998765   378899999999999999998  45444333211  000 


Q ss_pred             -cccccccccccccc-cccCCCcchhccHHHHHHHHHhcCCCCeeEeeeeEEEEEEecCCceEEEEEEeccCCceEEEee
Q 014324           83 -QNQATDNAKVTRTL-ARDDNFNFRAAHWADLHGLLYNALPPEIFLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKG  160 (426)
Q Consensus        83 -~~~~~~~~~~~~~~-~~~~~~~~~~~~r~~l~~~L~~~~~~~~i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~  160 (426)
                       ...+.++....... ......+...++|..|.+.|.+.++...++++++|++++.++  ..|+++   +++|++  +++
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~v~~~~~v~~i~~~~--~~~~v~---~~~g~~--~~a  148 (414)
T TIGR03219        76 IWFEWRNGSDASYLGATIAPGVGQSSVHRADFLDALLKHLPEGIASFGKRATQIEEQA--EEVQVL---FTDGTE--YRC  148 (414)
T ss_pred             eeEEEEecCccceeeeeccccCCcccCCHHHHHHHHHHhCCCceEEcCCEEEEEEecC--CcEEEE---EcCCCE--EEe
Confidence             01111111000000 001123345689999999999988765588999999998643  356666   567765  899


Q ss_pred             cEEEeccCCchhhhhhhcC-----CCcccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEEEe
Q 014324          161 NLLVAADGCLSSIRQSFLS-----DFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYEL  235 (426)
Q Consensus       161 d~vI~AdG~~S~vR~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (426)
                      |+||+|||.+|.||+.+++     ...+.+.++..|+++++............+.   +.......++.+++++++++|+
T Consensus       149 d~vVgADG~~S~vR~~l~~~~~~~~~~p~~~g~~~~r~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~p~  225 (414)
T TIGR03219       149 DLLIGADGIKSALRDYVLQGQGQAPVRPRFSGTCAYRGLVDSLQLREAYRAAGLD---EHLVDVPQMYLGLDGHILTFPV  225 (414)
T ss_pred             eEEEECCCccHHHHHHhcCccCCCCCCccccCcEEEEEEeeHHHHhhhhcccccc---ccccccceEEEcCCCeEEEEEC
Confidence            9999999999999999864     2456788999999988654321110000000   1111122345678888889999


Q ss_pred             cCCe-eeEEEEEecCCCCc----CCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcceEeeeeccCCCCcccccc
Q 014324          236 LNKR-LNWVWYINQPEPIM----KGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDPLKQIFWSN  310 (426)
Q Consensus       236 ~~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~r  310 (426)
                      .++. .++.++...+....    ....+.   .....+++++ .+..|.+.+.++++.......+.++...++++|..||
T Consensus       226 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~w~~gr  301 (414)
T TIGR03219       226 RQGRLINVVAFISDRSQPKPTWPSDTPWV---REATQREMLD-AFAGWGDAARALLECIPAPTLWALHDLAELPGYVHGR  301 (414)
T ss_pred             CCCcEEEEEEEEcCcccccCCCCCCCccc---CccCHHHHHH-HhcCCCHHHHHHHHhCCCCCceeeeecccccceeeCc
Confidence            8776 44555543221110    001111   1122334433 4567999999998877766667776677888999999


Q ss_pred             EEEeccccccCCCCCcchhhhhHHHHHHHHHHHHhh--ccccHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhcC
Q 014324          311 VVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKW--GVEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQGL  383 (426)
Q Consensus       311 v~LvGDAAh~~~P~~G~G~~~ai~Da~~La~~L~~~--~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~~  383 (426)
                      ++|+|||||.|+|+.|||+|+||+||..|+++|...  ...+++.+|+.|+++|+++++.+++.++.++++++..
T Consensus       302 v~LiGDAAH~m~P~~GqGa~~AieDA~~La~~L~~~~~~~~~~~~al~~Ye~~R~~r~~~~~~~s~~~~~~~~~~  376 (414)
T TIGR03219       302 VALIGDAAHAMLPHQGAGAGQGLEDAYFLARLLGDTELEAGDLPALLEAYDDVRRPRACRVQRTSREAGELYELR  376 (414)
T ss_pred             EEEEEcccCCCCCCcCcchHhHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCC
Confidence            999999999999999999999999999999999864  2357889999999999999999999999999887653

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=100.00  E-value=6.4e-45  Score=366.59  Aligned_cols=383  Identities=15%  Similarity=0.166  Sum_probs=250.2

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHc-CCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecc
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRA-GWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQ   83 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~-G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~   83 (426)
                      +++||+||||||+||++|+.|++. |++|+||||++.+.   ..|++++++|+++++|+++|+  .+.+.+.+.+.....
T Consensus        31 ~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~---~~grA~gl~prtleiL~~lGl--~d~l~~~g~~~~~~~  105 (634)
T PRK08294         31 DEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRL---ELGQADGIACRTMEMFQAFGF--AERILKEAYWINETA  105 (634)
T ss_pred             CCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCC---CCCeeeEEChHHHHHHHhccc--hHHHHhhcccccceE
Confidence            468999999999999999999995 99999999998764   367889999999999999998  566655554432111


Q ss_pred             cccccc---cccc---ccc---cccCCCcchhccHHHHHHHHHhcCCC-C--e-eEeeeeEEEEEEecC-CceEEEEEEe
Q 014324           84 NQATDN---AKVT---RTL---ARDDNFNFRAAHWADLHGLLYNALPP-E--I-FLRGHQYLSFCISEV-KTTVTVKAKV  149 (426)
Q Consensus        84 ~~~~~~---~~~~---~~~---~~~~~~~~~~~~r~~l~~~L~~~~~~-~--~-i~~~~~v~~~~~~~~-~~~v~v~~~~  149 (426)
                      .+..++   ..+.   ...   .....++...++|..+++.|.+.+.+ +  + +++++++++++.+++ ...|++++++
T Consensus       106 ~~~~~~~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~  185 (634)
T PRK08294        106 FWKPDPADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRR  185 (634)
T ss_pred             EEcCCCccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEE
Confidence            111111   0110   000   01123345678999999999987753 3  5 789999999987543 2468887654


Q ss_pred             cc---CCceEEEeecEEEeccCCchhhhhhhcCCCcccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCC
Q 014324          150 LQ---TDEVIEIKGNLLVAADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLAS  226 (426)
Q Consensus       150 ~~---~g~~~~~~~d~vI~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (426)
                      ..   +|+..+++|||||||||++|.||+++.......  .+...+++++....          .++|.......+...+
T Consensus       186 ~~~~~~g~~~tv~A~~lVGaDGa~S~VR~~lgi~~~G~--~~~~~~~v~dv~~~----------~~~p~~~~~~~~~~~~  253 (634)
T PRK08294        186 TDGEHEGEEETVRAKYVVGCDGARSRVRKAIGRELRGD--SANHAWGVMDVLAV----------TDFPDIRLKCAIQSAS  253 (634)
T ss_pred             CCCCCCCceEEEEeCEEEECCCCchHHHHhcCCCccCC--cccceEEEEEEEEc----------cCCCCcceEEEEecCC
Confidence            32   465567999999999999999999985433221  12222344443211          1234322222344466


Q ss_pred             CceEEEEEecCCe-eeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcceEeeeec--cCCC
Q 014324          227 GTHSVFYELLNKR-LNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYD--CDPL  303 (426)
Q Consensus       227 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~  303 (426)
                      ++.++++|.+++. ++  +++................+.+.+.+........+...+.       ....|..+.  ....
T Consensus       254 ~g~~~~~P~~~g~~~r--~~~~~~~~~~~~~~~~~~~t~e~l~~~~~~~~~p~~~~~~-------~v~w~s~y~i~~r~a  324 (634)
T PRK08294        254 EGSILLIPREGGYLVR--LYVDLGEVPPDERVAVRNTTVEEVIAKAQRILHPYTLDVK-------EVAWWSVYEVGQRLT  324 (634)
T ss_pred             CceEEEEECCCCeEEE--EEEecCcCCCccccccccCCHHHHHHHHHHhcCCCCCcee-------EEeEEecccccceeh
Confidence            7788889987774 33  3333221111111111222343333333322211111111       111222221  1111


Q ss_pred             Cc----------cccccEEEeccccccCCCCCcchhhhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHhhhhhHHHHHHH
Q 014324          304 KQ----------IFWSNVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWG-VEGLLSALEEYQTVRLPVTSKQVLH  372 (426)
Q Consensus       304 ~~----------~~~~rv~LvGDAAh~~~P~~G~G~~~ai~Da~~La~~L~~~~-~~~~~~~L~~Y~~~R~~~~~~~~~~  372 (426)
                      ++          |..+||+|+|||||+++|..|||||++|+||++|+|+|+... +...+++|++|+++|+++++.+++.
T Consensus       325 ~~f~~~~~~~~~~r~gRVfLaGDAAH~hsP~~GQGmN~giqDA~nLawkLa~vl~g~a~~~lL~tYe~ERrp~a~~li~~  404 (634)
T PRK08294        325 DRFDDVPAEEAGTRLPRVFIAGDACHTHSAKAGQGMNVSMQDGFNLGWKLAAVLSGRSPPELLHTYSAERQAIAQELIDF  404 (634)
T ss_pred             hhcccccccccccccCCEEEEecCccCCCCccccchhhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            12          235999999999999999999999999999999999998763 3567899999999999999999999


Q ss_pred             HHHhhhhhhcCCCCCCCCCCCCCCChhhhHHHhhccCCcccCCCccc
Q 014324          373 SRRLGRIKQGLALPDREPFNTKTASPQDCQELQQKTMPFFADLPSLV  419 (426)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (426)
                      ++.+.++|.......      .....+.+.+.+.+...|++|++..+
T Consensus       405 ~~~~~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~sG~~~~Y  445 (634)
T PRK08294        405 DREWSTMMAAPPKEG------GGVDPAELQDYFVKHGRFTAGTATHY  445 (634)
T ss_pred             HHHHHHHhccCCccc------cccCHHHHHHHHHHhhhhhcccCccc
Confidence            999999997642211      23445678888888889999998776

>PRK06753 hypothetical protein; Provisional

Probab=100.00  E-value=1.8e-44  Score=346.38  Aligned_cols=338  Identities=25%  Similarity=0.337  Sum_probs=246.8

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccccc
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQA   86 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   86 (426)
                      ++|+||||||+||++|+.|+++|++|+||||++.+..   .++++.+.+++++.|+.+|+  .+.+...+.+........
T Consensus         1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~---~g~gi~l~~~~~~~L~~~gl--~~~~~~~~~~~~~~~~~~   75 (373)
T PRK06753          1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKE---VGAGIGIGDNVIKKLGNHDL--AKGIKNAGQILSTMNLLD   75 (373)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccc---cccceeeChHHHHHHHhcCh--HHHHHhcCCcccceeEEc
Confidence            4899999999999999999999999999999998753   57889999999999999987  555555444322111122


Q ss_pred             cccccccccccccCCCcchhccHHHHHHHHHhcCCCCeeEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEec
Q 014324           87 TDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEIFLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAA  166 (426)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~A  166 (426)
                      .+++.+... ........+.++|..|++.|.+.++...+++++++++++.+  +..++++   +++|+.  +++|+||+|
T Consensus        76 ~~g~~~~~~-~~~~~~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~~--~~~v~v~---~~~g~~--~~~~~viga  147 (373)
T PRK06753         76 DKGTLLNKV-KLKSNTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENE--TDKVTIH---FADGES--EAFDLCIGA  147 (373)
T ss_pred             CCCCEEeec-ccccCCccccccHHHHHHHHHHhCCCceEEECCEEEEEEec--CCcEEEE---ECCCCE--EecCEEEEC
Confidence            223322111 11122345679999999999998875348999999999853  3456666   567765  799999999


Q ss_pred             cCCchhhhhhhcCCCcccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEEEecCCeeeEEEEE
Q 014324          167 DGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELLNKRLNWVWYI  246 (426)
Q Consensus       167 dG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (426)
                      ||.+|.+|+++.++....+.++..|++.++......           +  ... ...+.++++++++|.+++...|.+.+
T Consensus       148 dG~~S~vR~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----------~--~~~-~~~~~~~g~~~~~p~~~~~~~~~~~~  213 (373)
T PRK06753        148 DGIHSKVRQSVNADSKVRYQGYTCFRGLIDDIDLKL-----------P--DCA-KEYWGTKGRFGIVPLLNNQAYWFITI  213 (373)
T ss_pred             CCcchHHHHHhCCCCCceEcceEEEEEEeccccccC-----------c--cce-EEEEcCCCEEEEEEcCCCeEEEEEEe
Confidence            999999999997766677888888888765332110           0  011 12235566788899988877776655


Q ss_pred             ecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCc--ceEeeeeccCCCCccccccEEEeccccccCCCC
Q 014324          247 NQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKE--PFINAMYDCDPLKQIFWSNVVLIGDAAHPTTPH  324 (426)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~p~~~~~~~rv~LvGDAAh~~~P~  324 (426)
                      ..+....   . ....+.+.+.    ..+..|.+.+..+++....  ...+..+...++++|..+|++|||||||.|+|+
T Consensus       214 ~~~~~~~---~-~~~~~~~~l~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LiGDAAh~~~P~  285 (373)
T PRK06753        214 NAKERDP---K-YSSFGKPHLQ----AYFNHYPNEVREILDKQSETGILHHDIYDLKPLKSFVYGRIVLLGDAAHATTPN  285 (373)
T ss_pred             ccccCCc---c-cccccHHHHH----HHHhcCChHHHHHHHhCCcccceeeccccccccccccCCCEEEEecccccCCCC
Confidence            4322110   0 1111222222    3345688888887765432  233445556677889999999999999999999


Q ss_pred             CcchhhhhHHHHHHHHHHHHhhccccHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhc
Q 014324          325 GLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQG  382 (426)
Q Consensus       325 ~G~G~~~ai~Da~~La~~L~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~  382 (426)
                      .|||+|+||+||..|+++|..   .+.+++|+.|+++|+++++.+++.++.++++++.
T Consensus       286 ~GqG~n~ai~Da~~L~~~L~~---~~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~~  340 (373)
T PRK06753        286 MGQGAGQAMEDAIVLANCLNA---YDFEKALQRYDKIRVKHTAKVIKRSRKIGKIAQI  340 (373)
T ss_pred             cCccHHHHHHHHHHHHHHhhh---ccHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHhc
Confidence            999999999999999999964   4678999999999999999999999999998865

>PRK06475 salicylate hydroxylase; Provisional

Probab=100.00  E-value=2.8e-44  Score=347.35  Aligned_cols=347  Identities=22%  Similarity=0.270  Sum_probs=243.4

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccccc
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQA   86 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   86 (426)
                      .+|+||||||+||++|+.|+++|++|+|+||.+.+.   ..|+++.+.|+++++|+++|+  .+.+...+.....  ...
T Consensus         3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~---~~g~gi~l~~~~~~~L~~~Gl--~~~l~~~~~~~~~--~~~   75 (400)
T PRK06475          3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELS---EVGAGLQLAPNAMRHLERLGV--ADRLSGTGVTPKA--LYL   75 (400)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccC---cCCccceeChhHHHHHHHCCC--hHHHhhcccCcce--EEE
Confidence            689999999999999999999999999999998764   367899999999999999998  5666554443221  111


Q ss_pred             ccccccc---c-c----ccccCCCcchhccHHHHHHHHHhcCC--CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCce
Q 014324           87 TDNAKVT---R-T----LARDDNFNFRAAHWADLHGLLYNALP--PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEV  155 (426)
Q Consensus        87 ~~~~~~~---~-~----~~~~~~~~~~~~~r~~l~~~L~~~~~--~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~  155 (426)
                      .++....   . .    .......++..++|..|++.|.+.+.  .++ ++++++|++++.+  ...+++++.+..+++ 
T Consensus        76 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~--~~~v~v~~~~~~~~~-  152 (400)
T PRK06475         76 MDGRKARPLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQT--GNSITATIIRTNSVE-  152 (400)
T ss_pred             ecCCCcceEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecC--CCceEEEEEeCCCCc-
Confidence            2222110   0 0    00111234556899999999999875  367 9999999999853  345666643333333 


Q ss_pred             EEEeecEEEeccCCchhhhhhhcCCCcccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEEEe
Q 014324          156 IEIKGNLLVAADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYEL  235 (426)
Q Consensus       156 ~~~~~d~vI~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (426)
                       ++++|+||||||.+|.||+++.. ..+.|.++..|++.++.+.....     +...++..+ ....+.+++..++.+|+
T Consensus       153 -~~~adlvIgADG~~S~vR~~~~~-~~~~~~g~~~~~~~~~~~~~~~~-----~~~~~~~~~-~~~~~~g~~~~~~~~p~  224 (400)
T PRK06475        153 -TVSAAYLIACDGVWSMLRAKAGF-SKARFSGHIAWRTTLAADALPAS-----FLSAMPEHK-AVSAWLGNKAHFIAYPV  224 (400)
T ss_pred             -EEecCEEEECCCccHhHHhhcCC-CCCCcCCceEEEEEeehhhcchh-----hhhhcccCC-ceEEEEcCCCEEEEEEc
Confidence             38999999999999999999743 45678889999998876532211     111112222 23456688899999999


Q ss_pred             cCCeeeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcceEeeeeccCCCCccccccEEEec
Q 014324          236 LNKRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDPLKQIFWSNVVLIG  315 (426)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~rv~LvG  315 (426)
                      +++...+.+.+..+...  ...+....+.+.    +...+..|.+.+..+++.......++++...+.+.|..+|++|||
T Consensus       225 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~----l~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~grvvLiG  298 (400)
T PRK06475        225 KGGKFFNFVAITGGENP--GEVWSKTGDKAH----LKSIYADWNKPVLQILAAIDEWTYWPLFEMADAQFVGPDRTIFLG  298 (400)
T ss_pred             cCCcEEEEEEEEcCCCC--cccCCCCCCHHH----HHHHhcCCChHHHHHHhcCCceeECcCcccCCCcceecCCEEEEe
Confidence            87754333322222110  111122222332    233467799999988887666555665544444445569999999


Q ss_pred             cccccCCCCCcchhhhhHHHHHHHHHHHHhhccccHHHHHHHHHHhhhhhHHHHHHHHHHhhhhh
Q 014324          316 DAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIK  380 (426)
Q Consensus       316 DAAh~~~P~~G~G~~~ai~Da~~La~~L~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~  380 (426)
                      ||||.|+|+.|||+|+||+||..|+++|..   .+...+|+.|++.|+++++.++..++....++
T Consensus       299 DAAH~~~P~~GqG~n~aieDa~~La~~L~~---~~~~~aL~~Ye~~R~~r~~~~~~~s~~~~~~~  360 (400)
T PRK06475        299 DASHAVTPFAAQGAAMAIEDAAALAEALDS---DDQSAGLKRFDSVRKERIAAVAKRGQLNRFAY  360 (400)
T ss_pred             cccccCCchhhhhHHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999964   36779999999999999999999887444333

>PRK08163 salicylate hydroxylase; Provisional

Probab=100.00  E-value=9.7e-44  Score=344.11  Aligned_cols=346  Identities=26%  Similarity=0.296  Sum_probs=248.2

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCccee-ecc
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLT-IDQ   83 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~   83 (426)
                      .+.||+||||||+||++|+.|+++|++|+||||.+.+..   .|+++.+.|+++++|+++|+  .+.+.+...... ...
T Consensus         3 ~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~---~g~gi~l~~~~~~~l~~lg~--~~~~~~~~~~~~~~~~   77 (396)
T PRK08163          3 KVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGE---IGAGIQLGPNAFSALDALGV--GEAARQRAVFTDHLTM   77 (396)
T ss_pred             CCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCccccc---ccceeeeCchHHHHHHHcCC--hHHHHhhccCCcceEE
Confidence            458999999999999999999999999999999987653   67899999999999999998  555554443321 111


Q ss_pred             ccccccccccccc-----cccCCCcchhccHHHHHHHHHhcCCC--Ce-eEeeeeEEEEEEecCCceEEEEEEeccCCce
Q 014324           84 NQATDNAKVTRTL-----ARDDNFNFRAAHWADLHGLLYNALPP--EI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEV  155 (426)
Q Consensus        84 ~~~~~~~~~~~~~-----~~~~~~~~~~~~r~~l~~~L~~~~~~--~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~  155 (426)
                      ....++..+....     ......++..++|..|.+.|.+.+.+  ++ +++++++++++.+  +..++++   +.+|++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~--~~~v~v~---~~~g~~  152 (396)
T PRK08163         78 MDAVDAEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQD--GDGVTVF---DQQGNR  152 (396)
T ss_pred             EeCCCCCEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecC--CCceEEE---EcCCCE
Confidence            1111222221111     01122345678999999999987753  46 9999999999853  3456665   566764


Q ss_pred             EEEeecEEEeccCCchhhhhhhcCCCcccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEEEe
Q 014324          156 IEIKGNLLVAADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYEL  235 (426)
Q Consensus       156 ~~~~~d~vI~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (426)
                        +++|+||+|||.+|.+|+.+.+. .+.+.++..|++.++.......         .+  ......+.+++.+++.+|+
T Consensus       153 --~~ad~vV~AdG~~S~~r~~~~g~-~~~~~g~~~~~~~~~~~~~~~~---------~~--~~~~~~~~g~~~~~~~~p~  218 (396)
T PRK08163        153 --WTGDALIGCDGVKSVVRQSLVGD-APRVTGHVVYRAVIDVDDMPED---------LR--INAPVLWAGPHCHLVHYPL  218 (396)
T ss_pred             --EecCEEEECCCcChHHHhhccCC-CCCccccEEEEEEEeHHHCcch---------hc--cCccEEEEcCCceEEEEEe
Confidence              89999999999999999998544 5567778888887764322110         01  0112345677788889999


Q ss_pred             cCCe-eeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcceEeeeeccCCCCccccccEEEe
Q 014324          236 LNKR-LNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDPLKQIFWSNVVLI  314 (426)
Q Consensus       236 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~rv~Lv  314 (426)
                      +++. +++++.+..+....   ......+.   +++. +.+..|.|.+.++++.......+......|+++|..+|++|+
T Consensus       219 ~~g~~~~~~~~~~~~~~~~---~~~~~~~~---~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~grv~Li  291 (396)
T PRK08163        219 RGGEQYNLVVTFHSREQEE---WGVKDGSK---EEVL-SYFEGIHPRPRQMLDKPTSWKRWATADREPVAKWSTGRVTLL  291 (396)
T ss_pred             cCCeEEEEEEEECCCCCcc---cccCCCCH---HHHH-HHHcCCChHHHHHHhcCCceeEccccCCCcccccccCcEEEE
Confidence            8765 55555554322110   00111122   2222 345678888888876654444444555667888999999999


Q ss_pred             ccccccCCCCCcchhhhhHHHHHHHHHHHHhhccccHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhc
Q 014324          315 GDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQG  382 (426)
Q Consensus       315 GDAAh~~~P~~G~G~~~ai~Da~~La~~L~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~  382 (426)
                      |||||.|+|+.|||+|+||+||..|+++|.... .+.+.+|+.|+++|++++..++..++.++.+++.
T Consensus       292 GDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~-~~~~~al~~y~~~R~~r~~~~~~~s~~~~~~~~~  358 (396)
T PRK08163        292 GDAAHPMTQYMAQGACMALEDAVTLGKALEGCD-GDAEAAFALYESVRIPRTARVVLSAREMGRIYHA  358 (396)
T ss_pred             ecccccCCcchhccHHHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhCC
Confidence            999999999999999999999999999997643 5678999999999999999999999999988864

>PRK07588 hypothetical protein; Provisional

Probab=100.00  E-value=1.6e-43  Score=341.55  Aligned_cols=342  Identities=17%  Similarity=0.141  Sum_probs=233.4

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccccc
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQA   86 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   86 (426)
                      +||+||||||+||++|+.|+++|++|+||||.+....   .+.++.+.++++++|+++|+  .+.+.+.+.+......+.
T Consensus         1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~---~g~~~~l~~~~~~~l~~lGl--~~~l~~~~~~~~~~~~~~   75 (391)
T PRK07588          1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRT---GGYMVDFWGVGYEVAKRMGI--TDQLREAGYQIEHVRSVD   75 (391)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccC---CCeEEeccCcHHHHHHHcCC--HHHHHhccCCccceEEEc
Confidence            4899999999999999999999999999999987642   46788899999999999998  666666554432211122


Q ss_pred             cccccccccc----cccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeec
Q 014324           87 TDNAKVTRTL----ARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGN  161 (426)
Q Consensus        87 ~~~~~~~~~~----~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d  161 (426)
                      .++..+....    ....+..+..++|..|.+.|.+.++.++ ++++++|++++.++  ..|+++   +++|++  +++|
T Consensus        76 ~~g~~~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~~~v~i~~~~~v~~i~~~~--~~v~v~---~~~g~~--~~~d  148 (391)
T PRK07588         76 PTGRRKADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAIDGQVETIFDDSIATIDEHR--DGVRVT---FERGTP--RDFD  148 (391)
T ss_pred             CCCCEEEEecHHHccccCCCceEEEEHHHHHHHHHHhhhcCeEEEeCCEEeEEEECC--CeEEEE---ECCCCE--EEeC
Confidence            2333221111    1112234567999999999998877778 99999999998543  466666   567876  7899


Q ss_pred             EEEeccCCchhhhhhhcCCCc--ccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEEEecCCe
Q 014324          162 LLVAADGCLSSIRQSFLSDFK--LRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELLNKR  239 (426)
Q Consensus       162 ~vI~AdG~~S~vR~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (426)
                      +||+|||.+|+||+.+.+...  ..+.+...+...++  ..            .+........+.+++.++.++|++++.
T Consensus       149 ~vIgADG~~S~vR~~~~~~~~~~~~~~g~~~~~~~~~--~~------------~~~~~~~~~~~~~~g~~~~~~p~~~~~  214 (391)
T PRK07588        149 LVIGADGLHSHVRRLVFGPERDFEHYLGCKVAACVVD--GY------------RPRDERTYVLYNEVGRQVARVALRGDR  214 (391)
T ss_pred             EEEECCCCCccchhhccCCccceEEEcCcEEEEEEcC--CC------------CCCCCceEEEEeCCCCEEEEEecCCCC
Confidence            999999999999998643222  22344333322221  00            011111223445677788999998887


Q ss_pred             eeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcc--eEeeeeccCCCCccccccEEEeccc
Q 014324          240 LNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEP--FINAMYDCDPLKQIFWSNVVLIGDA  317 (426)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~p~~~~~~~rv~LvGDA  317 (426)
                      ..+.+....+...       ...+.+...+.+.+.+..|.+....++......  .........++++|..||++|+|||
T Consensus       215 ~~~~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~grv~LiGDA  287 (391)
T PRK07588        215 TLFLFIFRAEHDN-------PPLTPAEEKQLLRDQFGDVGWETPDILAALDDVEDLYFDVVSQIRMDRWSRGRVALVGDA  287 (391)
T ss_pred             eEEEEEEEcCCcc-------ccCCHHHHHHHHHHHhccCCccHHHHHHhhhcccchheeeeeeeccCccccCCEEEEEcc
Confidence            6666555433211       011233333434444545544333333221111  1111122345678899999999999


Q ss_pred             cccCCCCCcchhhhhHHHHHHHHHHHHhhccccHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhc
Q 014324          318 AHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQG  382 (426)
Q Consensus       318 Ah~~~P~~G~G~~~ai~Da~~La~~L~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~  382 (426)
                      ||.|+|+.|||+|+||+||..|+++|.... .+.+.+|+.|++.|++++..++..+..+.++++.
T Consensus       288 AH~~~P~~GqG~n~aieDa~~La~~L~~~~-~~~~~al~~Y~~~R~~~~~~~~~~~~~~~~~~~~  351 (391)
T PRK07588        288 AACPSLLGGEGSGLAITEAYVLAGELARAG-GDHRRAFDAYEKRLRPFIAGKQAAAAKFLSVFAP  351 (391)
T ss_pred             ccCCCCccCCcHHHHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHHHHHhhcccccccccC
Confidence            999999999999999999999999998643 4578999999999999999999999988877754

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=100.00  E-value=6.9e-43  Score=345.94  Aligned_cols=350  Identities=21%  Similarity=0.262  Sum_probs=250.4

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC-CCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecc
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP-TGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQ   83 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~-~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~   83 (426)
                      +.++|+||||||+||++|+.|+++|++|+||||.+... .....++++.|.++++++|+++|+...+.+.+.+.......
T Consensus        80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~~~~r~~G~~~~~I~L~pngl~aLe~LGl~~~e~l~~~g~~~~~~i  159 (668)
T PLN02927         80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDLSAIRGEGKYRGPIQIQSNALAALEAIDIDVAEQVMEAGCITGDRI  159 (668)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccccccccccccCcccccCHHHHHHHHHcCcchHHHHHhhcCccccee
Confidence            45899999999999999999999999999999986421 11112356899999999999998643455555443211111


Q ss_pred             c---cccccccccccc--c--ccCCCc-chhccHHHHHHHHHhcCCCCeeEeeeeEEEEEEecCCceEEEEEEeccCCce
Q 014324           84 N---QATDNAKVTRTL--A--RDDNFN-FRAAHWADLHGLLYNALPPEIFLRGHQYLSFCISEVKTTVTVKAKVLQTDEV  155 (426)
Q Consensus        84 ~---~~~~~~~~~~~~--~--~~~~~~-~~~~~r~~l~~~L~~~~~~~~i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~  155 (426)
                      .   ....+.......  .  ...+.+ .+.++|..|++.|.+.+...+++++++|++++..  +..|+++   +.+|++
T Consensus       160 ~~~~d~~~G~~~~~~~~~~~~~~~g~p~~~~I~R~~L~~~L~~alg~~~i~~g~~V~~I~~~--~d~VtV~---~~dG~t  234 (668)
T PLN02927        160 NGLVDGISGSWYVKFDTFTPAASRGLPVTRVISRMTLQQILARAVGEDVIRNESNVVDFEDS--GDKVTVV---LENGQR  234 (668)
T ss_pred             eeeeecCCCceEeeccccccccccCCCeEEEEeHHHHHHHHHhhCCCCEEEcCCEEEEEEEe--CCEEEEE---ECCCCE
Confidence            1   111222111100  0  011122 3578999999999988866568899999999854  3467776   567765


Q ss_pred             EEEeecEEEeccCCchhhhhhhcCCCcccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEEEe
Q 014324          156 IEIKGNLLVAADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYEL  235 (426)
Q Consensus       156 ~~~~~d~vI~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (426)
                        +++|+||+|||++|++|+.+++...+.+.++..|+++++..+...           ...+  ...+.++..+++.++.
T Consensus       235 --i~aDlVVGADG~~S~vR~~l~g~~~~~~sG~~~~rgi~~~~p~~~-----------~~~~--~~~~~G~~~~~v~~~v  299 (668)
T PLN02927        235 --YEGDLLVGADGIWSKVRNNLFGRSEATYSGYTCYTGIADFIPADI-----------ESVG--YRVFLGHKQYFVSSDV  299 (668)
T ss_pred             --EEcCEEEECCCCCcHHHHHhcCCCCCcccceEEEEEEcCCCcccc-----------cccc--eEEEEcCCeEEEEEcC
Confidence              799999999999999999998777788999999999987643210           0011  1234567777777777


Q ss_pred             cCCeeeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCc--ceEeeeeccCCCCccccccEEE
Q 014324          236 LNKRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKE--PFINAMYDCDPLKQIFWSNVVL  313 (426)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~p~~~~~~~rv~L  313 (426)
                      +++...|.++...+....       .......+++ ...+..|.+.+.++++..+.  ...+.++...|..+|.+|||+|
T Consensus       300 ~~g~~~~~~f~~~p~~~~-------~~~~~~~e~L-~~~f~~w~~~v~elI~~t~~~~i~~~~iyd~~p~~~W~~grVvL  371 (668)
T PLN02927        300 GGGKMQWYAFHEEPAGGA-------DAPNGMKKRL-FEIFDGWCDNVLDLLHATEEDAILRRDIYDRSPGFTWGKGRVTL  371 (668)
T ss_pred             CCCeEEEEEEEECCcccc-------ccchhHHHHH-HHHhccCCHHHHHHHHhCccccceeeeEEeccCCCccccCcEEE
Confidence            777666655544432110       0122233333 34567899999998876653  3456677777888899999999


Q ss_pred             eccccccCCCCCcchhhhhHHHHHHHHHHHHhhc--------cccHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhc
Q 014324          314 IGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWG--------VEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQG  382 (426)
Q Consensus       314 vGDAAh~~~P~~G~G~~~ai~Da~~La~~L~~~~--------~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~  382 (426)
                      +|||||.|+|+.|||+|+||+||..|+++|....        ..+++.+|+.|+++|++++..++..++....++..
T Consensus       372 iGDAAH~~~P~~GqG~n~AieDa~~La~~L~~~~~~~~~~~~~~~~~~aL~~Ye~~R~~rv~~i~~~ar~a~~~~~~  448 (668)
T PLN02927        372 LGDSIHAMQPNMGQGGCMAIEDSFQLALELDEAWKQSVETNTPVDVVSSLKRYEESRRLRVAIIHAMARMAAIMAST  448 (668)
T ss_pred             EcCccCCCCCccccchHHHHHHHHHHHHHHHHhhccccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999997641        23578999999999999999999998877766543

>PRK05868 hypothetical protein; Validated

Probab=100.00  E-value=1.4e-42  Score=331.30  Aligned_cols=342  Identities=16%  Similarity=0.172  Sum_probs=227.6

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccccc
Q 014324            8 KAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQAT   87 (426)
Q Consensus         8 ~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (426)
                      ||+||||||+|+++|+.|+++|++|+||||++.+.   ..|.++.+.++++++|+++|+  .+.+.+...+.........
T Consensus         3 ~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~---~~g~~i~~~~~a~~~L~~lGl--~~~~~~~~~~~~~~~~~~~   77 (372)
T PRK05868          3 TVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLR---PGGQAIDVRGPALDVLERMGL--LAAAQEHKTRIRGASFVDR   77 (372)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC---CCceeeeeCchHHHHHHhcCC--HHHHHhhccCccceEEEeC
Confidence            89999999999999999999999999999998865   357788999999999999997  5666554443322122222


Q ss_pred             cccccccccc---cc--CCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeec
Q 014324           88 DNAKVTRTLA---RD--DNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGN  161 (426)
Q Consensus        88 ~~~~~~~~~~---~~--~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d  161 (426)
                      ++..+.....   ..  ...+...++|..|.+.|.+.+..++ +++++++++++.+  +..|+++   +++|++  ++||
T Consensus        78 ~g~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~~~~v~i~~~~~v~~i~~~--~~~v~v~---~~dg~~--~~ad  150 (372)
T PRK05868         78 DGNELFRDTESTPTGGPVNSPDIELLRDDLVELLYGATQPSVEYLFDDSISTLQDD--GDSVRVT---FERAAA--REFD  150 (372)
T ss_pred             CCCEEeecccccccCCCCCCceEEEEHHHHHHHHHHhccCCcEEEeCCEEEEEEec--CCeEEEE---ECCCCe--EEeC
Confidence            3332211110   00  1112346789999999988777788 9999999999853  4567776   677875  7899


Q ss_pred             EEEeccCCchhhhhhhcCCCcccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEEEecCCee-
Q 014324          162 LLVAADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELLNKRL-  240 (426)
Q Consensus       162 ~vI~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  240 (426)
                      +||||||.+|.+|+++++........+..+...+..+...            +. .....++.+++..+.++|..++.. 
T Consensus       151 lvIgADG~~S~vR~~~~~~~~~~~~~~g~~~~~~~~~~~~------------~~-~~~~~~~~g~~~~~~~~~~~~~~~~  217 (372)
T PRK05868        151 LVIGADGLHSNVRRLVFGPEEQFVKRLGTHAAIFTVPNFL------------EL-DYWQTWHYGDSTMAGVYSARNNTEA  217 (372)
T ss_pred             EEEECCCCCchHHHHhcCCcccceeecceEEEEEEcCCCC------------CC-CcceEEEecCCcEEEEEecCCCCce
Confidence            9999999999999998643322222223333343332210            11 112223357777888888876543 


Q ss_pred             eEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhh-ccc-HHHHHHhhhcCcceEeeeeccCCCCccccccEEEecccc
Q 014324          241 NWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEK-VWL-PEFVKVIKETKEPFINAMYDCDPLKQIFWSNVVLIGDAA  318 (426)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~rv~LvGDAA  318 (426)
                      +..+.+.......     .........+.+.+.+.. .|. +.+.+.+...... ........++++|..|||+|+||||
T Consensus       218 ~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~f~~~~w~~~~l~~~~~~~~~~-~~~~~~~~~~~~w~~grv~LvGDAA  291 (372)
T PRK05868        218 RAALAFMDTELRI-----DYRDTEAQFAELQRRMAEDGWVRAQLLHYMRSAPDF-YFDEMSQILMDRWSRGRVALVGDAG  291 (372)
T ss_pred             EEEEEEecCCccc-----ccCChHHHHHHHHHHHhhCCCchHHHHhhcccCCce-eeccceEEecCCCCCCCeeeeeccc
Confidence            3333232211110     001112223333333221 565 4555554433222 1221224567889999999999999


Q ss_pred             ccCCCCCcchhhhhHHHHHHHHHHHHhhccccHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhh
Q 014324          319 HPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQ  381 (426)
Q Consensus       319 h~~~P~~G~G~~~ai~Da~~La~~L~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~  381 (426)
                      |.++|+.|||+|+||+||+.|+++|.... .+.+++|+.|++.++|++.+.++.......+|.
T Consensus       292 H~~~P~~GqGa~~AleDa~~La~~L~~~~-~~~~~al~~ye~~~~~~~~~~q~~~~~~~~~~~  353 (372)
T PRK05868        292 YCCSPLSGQGTSVALLGAYILAGELKAAG-DDYQLGFANYHAEFHGFVERNQWLVSDNIPGGA  353 (372)
T ss_pred             ccCCCccCccHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHhHHHHHhhhhhhccCCccc
Confidence            99999999999999999999999997653 568999999999988888887777666555543

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=100.00  E-value=8.5e-43  Score=348.58  Aligned_cols=342  Identities=21%  Similarity=0.193  Sum_probs=229.9

Q ss_pred             CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecc
Q 014324            4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQ   83 (426)
Q Consensus         4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~   83 (426)
                      +..+||+||||||+||++|+.|+++|++|+||||.+.+..   .++++.+.++++++|+++|+  .+.+.+.+.+.....
T Consensus         8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~---~~ra~~l~~~~~~~L~~lGl--~~~l~~~~~~~~~~~   82 (538)
T PRK06183          8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYD---LPRAVGIDDEALRVLQAIGL--ADEVLPHTTPNHGMR   82 (538)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC---CCceeeeCHHHHHHHHHcCC--hhHHHhhcccCCceE
Confidence            4578999999999999999999999999999999988753   45788999999999999998  566555444322111


Q ss_pred             ccccccccccccc-c--ccCCCc-chhccHHHHHHHHHhcCC--CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceE
Q 014324           84 NQATDNAKVTRTL-A--RDDNFN-FRAAHWADLHGLLYNALP--PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVI  156 (426)
Q Consensus        84 ~~~~~~~~~~~~~-~--~~~~~~-~~~~~r~~l~~~L~~~~~--~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~  156 (426)
                      ....+++.+.... .  ....++ ...++|..+++.|.+.+.  .++ |++++++++++.+++  .|+++++ ..+|+..
T Consensus        83 ~~~~~g~~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~--~v~v~~~-~~~G~~~  159 (538)
T PRK06183         83 FLDAKGRCLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDD--GVTVTLT-DADGQRE  159 (538)
T ss_pred             EEcCCCCEEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCC--eEEEEEE-cCCCCEE
Confidence            1112333221111 1  111122 246788999999988764  377 999999999986544  5666643 2367666


Q ss_pred             EEeecEEEeccCCchhhhhhhcCCCcccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEEEec
Q 014324          157 EIKGNLLVAADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELL  236 (426)
Q Consensus       157 ~~~~d~vI~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (426)
                      +++||+||+|||++|.||+++....  ....+...+.+++.....           .+......++++++++.++++|.+
T Consensus       160 ~i~ad~vVgADG~~S~vR~~lg~~~--~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~p~~  226 (538)
T PRK06183        160 TVRARYVVGCDGANSFVRRTLGVPF--EDLTFPERWLVVDVLIAN-----------DPLGGPHTYQYCDPARPYTSVRLP  226 (538)
T ss_pred             EEEEEEEEecCCCchhHHHHcCCee--eCCCccceEEEEEEeccc-----------CccCCCceEEEECCCCCEEEEEcC
Confidence            7999999999999999999984322  111221111222321000           011112234567888888999998


Q ss_pred             CCeeeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhccc--HHHHHHhhhcCcceEeeeec--cCCCCccccccEE
Q 014324          237 NKRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWL--PEFVKVIKETKEPFINAMYD--CDPLKQIFWSNVV  312 (426)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~p~~~~~~~rv~  312 (426)
                      ++...|.+.+......      ......+.+.+++.    .|.  +...+       ......+.  ....++|..|||+
T Consensus       227 ~~~~r~~~~~~~~~~~------~~~~~~~~~~~~l~----~~~~~~~~~~-------~~~~~~~~~~~~~a~~~~~gRv~  289 (538)
T PRK06183        227 HGRRRWEFMLLPGETE------EQLASPENVWRLLA----PWGPTPDDAE-------LIRHAVYTFHARVADRWRSGRVL  289 (538)
T ss_pred             CCeEEEEEEeCCCCCh------hhcCCHHHHHHHHH----hhCCCCcceE-------EEEEEeeeEccEEhhhhccCCEE
Confidence            8877776655322111      01112333333332    221  11101       11111121  2345678899999


Q ss_pred             EeccccccCCCCCcchhhhhHHHHHHHHHHHHhh-ccccHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhcC
Q 014324          313 LIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKW-GVEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQGL  383 (426)
Q Consensus       313 LvGDAAh~~~P~~G~G~~~ai~Da~~La~~L~~~-~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~~  383 (426)
                      |+|||||.|+|++|||+|+||+||.+|+|+|... .+...+.+|++|+++|+++++.+++.+..+.++++..
T Consensus       290 L~GDAAH~~~P~~GQG~n~gi~DA~~La~kLa~~~~g~~~~~~L~~Ye~eR~p~~~~~~~~s~~~~~~~~~~  361 (538)
T PRK06183        290 LAGDAAHLMPPFAGQGMNSGIRDAANLAWKLAAVLRGRAGDALLDTYEQERRPHARAMIDLAVRLGRVICPT  361 (538)
T ss_pred             EEechhhcCCCccccchhhhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC
Confidence            9999999999999999999999999999999865 2345689999999999999999999999999887653

>PRK07045 putative monooxygenase; Reviewed

Probab=100.00  E-value=2.9e-42  Score=332.50  Aligned_cols=347  Identities=20%  Similarity=0.180  Sum_probs=226.4

Q ss_pred             CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecc
Q 014324            4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQ   83 (426)
Q Consensus         4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~   83 (426)
                      +.++||+||||||+||++|+.|+++|++|+||||.+.+..   .+++..+.|+++++|+++|+  .+.+.+.........
T Consensus         3 ~~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~---~~~~~~l~~~~~~~L~~lGl--~~~~~~~~~~~~~~~   77 (388)
T PRK07045          3 NNPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRA---QNGADLLKPSGIGVVRAMGL--LDDVFAAGGLRRDAM   77 (388)
T ss_pred             CceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccC---CCcccccCccHHHHHHHcCC--HHHHHhcccccccce
Confidence            4678999999999999999999999999999999998753   33456799999999999998  555554433211111


Q ss_pred             cccccccccccccc-ccCCCc-chhccHHHHHHHHHhcCC--CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEE
Q 014324           84 NQATDNAKVTRTLA-RDDNFN-FRAAHWADLHGLLYNALP--PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEI  158 (426)
Q Consensus        84 ~~~~~~~~~~~~~~-~~~~~~-~~~~~r~~l~~~L~~~~~--~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~  158 (426)
                      ..+.+++....... .....+ +..++|..|++.|.+.+.  .++ +++++++++++.++++..+.|+   +++|++  +
T Consensus        78 ~~~~~g~~~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~---~~~g~~--~  152 (388)
T PRK07045         78 RLYHDKELIASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVT---LSDGER--V  152 (388)
T ss_pred             EEecCCcEEEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEE---eCCCCE--E
Confidence            11223332211111 111112 345789999999998764  467 9999999999976554444565   567764  8


Q ss_pred             eecEEEeccCCchhhhhhhcC-C-CcccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEEEec
Q 014324          159 KGNLLVAADGCLSSIRQSFLS-D-FKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELL  236 (426)
Q Consensus       159 ~~d~vI~AdG~~S~vR~~l~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (426)
                      ++|+||+|||.+|.+|+++.+ . ....+..... .+.+...+..            +... .. +...++++.+++|.+
T Consensus       153 ~~~~vIgADG~~S~vR~~~~~~~~~~~~~~~~~~-~~~~~~~~~~------------~~~~-~~-~~~~~~~~~~~~p~~  217 (388)
T PRK07045        153 APTVLVGADGARSMIRDDVLRMPAERVPYATPMA-FGTIALTDSV------------RECN-RL-YVDSNQGLAYFYPIG  217 (388)
T ss_pred             ECCEEEECCCCChHHHHHhhCCCcccCCCCccee-EEEEeccCCc------------cccc-eE-EEcCCCceEEEEEcC
Confidence            999999999999999997542 1 1233333333 3333322110            1101 11 122334566788888


Q ss_pred             CCeeeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcceEee--eeccCCCCccccccEEEe
Q 014324          237 NKRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINA--MYDCDPLKQIFWSNVVLI  314 (426)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~p~~~~~~~rv~Lv  314 (426)
                      ++..++.+.++.+...    .+......+.+.+.+..   .+.+.+.+.++.......+.  .....++++|..+|++|+
T Consensus       218 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~grv~Li  290 (388)
T PRK07045        218 DQATRLVVSFPADEMQ----GYLADTTRTKLLARLNE---FVGDESADAMAAIGAGTAFPLIPLGRMNLDRYHKRNVVLL  290 (388)
T ss_pred             CCcEEEEEEeccccch----hccCCCCHHHHHHHHhh---hcCccchHHHhccCcccccceeecCccccccccCCCEEEE
Confidence            7777676655432211    01111122222222221   12233333333222111111  112345677889999999


Q ss_pred             ccccccCCCCCcchhhhhHHHHHHHHHHHHhhcc--ccHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhc
Q 014324          315 GDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGV--EGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQG  382 (426)
Q Consensus       315 GDAAh~~~P~~G~G~~~ai~Da~~La~~L~~~~~--~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~  382 (426)
                      |||||.|+|+.|||+|+||+||..|+++|.....  .+.+++|+.|+++|++++..++..++.+.+.++.
T Consensus       291 GDAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~~~~~  360 (388)
T PRK07045        291 GDAAHSIHPITGQGMNLAIEDAGELGACLDLHLSGQIALADALERFERIRRPVNEAVISYGHALATTYHD  360 (388)
T ss_pred             EccccccCCCccccHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHhhhHHHHHHhhhHHHhhhccc
Confidence            9999999999999999999999999999987532  3568999999999999999999999998888764

>PRK08013 oxidoreductase; Provisional

Probab=100.00  E-value=1.3e-42  Score=335.67  Aligned_cols=345  Identities=15%  Similarity=0.151  Sum_probs=217.7

Q ss_pred             CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCC---CCcceeccChhHHHHHHHHhcCCchhhhcc-Ccce
Q 014324            4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGS---PTGAGLGLDRPAQRIIQSWLNGRPHLLHLA-TVPL   79 (426)
Q Consensus         4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~---~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~-~~~~   79 (426)
                      |+++||+||||||+|+++|+.|+++|++|+|+||.+.+....   ...++..++++++++|+++|+  .+.+.+. ..+.
T Consensus         1 m~~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl--~~~~~~~~~~~~   78 (400)
T PRK08013          1 MQSVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGV--WQDILARRASCY   78 (400)
T ss_pred             CCcCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCC--chhhhhhcCccc
Confidence            345899999999999999999999999999999998754211   012456789999999999998  5555433 2232


Q ss_pred             eecccccccc-ccccccccccCCC--cchhccHHHHHHHHHhcCCC--Ce-eEeeeeEEEEEEecCCceEEEEEEeccCC
Q 014324           80 TIDQNQATDN-AKVTRTLARDDNF--NFRAAHWADLHGLLYNALPP--EI-FLRGHQYLSFCISEVKTTVTVKAKVLQTD  153 (426)
Q Consensus        80 ~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~r~~l~~~L~~~~~~--~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g  153 (426)
                      .....+..+. ..+. ......+.  ..+.++|..|++.|.+.+.+  ++ +++++++++++.++  ..++++   +.+|
T Consensus        79 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~--~~v~v~---~~~g  152 (400)
T PRK08013         79 HGMEVWDKDSFGRIA-FDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGE--NEAFLT---LKDG  152 (400)
T ss_pred             cEEEEEeCCCCceEE-EcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecC--CeEEEE---EcCC
Confidence            2111111110 0010 00011111  23578999999999987754  67 99999999998644  356666   5677


Q ss_pred             ceEEEeecEEEeccCCchhhhhhhcCCCcccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEE
Q 014324          154 EVIEIKGNLLVAADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFY  233 (426)
Q Consensus       154 ~~~~~~~d~vI~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (426)
                      ++  ++||+||||||.+|+||+++.............+...++.+.              +... ..+..+.+++++.++
T Consensus       153 ~~--i~a~lvVgADG~~S~vR~~~~~~~~~~~~~~~~~~~~v~~~~--------------~~~~-~~~~~~~~~g~~~~~  215 (400)
T PRK08013        153 SM--LTARLVVGADGANSWLRNKADIPLTFWDYQHHALVATIRTEE--------------PHDA-VARQVFHGDGILAFL  215 (400)
T ss_pred             CE--EEeeEEEEeCCCCcHHHHHcCCCccccccCcEEEEEEEeccC--------------CCCC-EEEEEEcCCCCEEEE
Confidence            65  899999999999999999985433222112222333333221              1111 122333455577888


Q ss_pred             EecCCe-eeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcceEeeeeccCCCCccccccEE
Q 014324          234 ELLNKR-LNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDPLKQIFWSNVV  312 (426)
Q Consensus       234 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~rv~  312 (426)
                      |.+++. .++.|....+...    . ......+.+.+.+   ...|.+.+... ........+.+. ....++|..+|++
T Consensus       216 p~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~l---~~~~~~~l~~~-~~~~~~~~~~l~-~~~~~~~~~grv~  285 (400)
T PRK08013        216 PLSDPHLCSIVWSLSPEEAQ----R-MQQAPEEEFNRAL---AIAFDNRLGLC-ELESERQVFPLT-GRYARQFAAHRLA  285 (400)
T ss_pred             ECCCCCeEEEEEEcCHHHHH----H-HHcCCHHHHHHHH---HHHHhHhhCce-EecCCccEEecc-eeecccccCCcEE
Confidence            887654 4566554321100    0 0011121222211   11122222111 111111122222 2246778899999


Q ss_pred             EeccccccCCCCCcchhhhhHHHHHHHHHHHHhhc--ccc--HHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhcC
Q 014324          313 LIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWG--VEG--LLSALEEYQTVRLPVTSKQVLHSRRLGRIKQGL  383 (426)
Q Consensus       313 LvGDAAh~~~P~~G~G~~~ai~Da~~La~~L~~~~--~~~--~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~~  383 (426)
                      |+|||||.++|+.|||+|+||+||.+|+++|....  ..+  ...+|++|+++|++++..++..+..+.++|+..
T Consensus       286 LiGDAAH~~~P~~GQG~n~gi~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~l~~~~  360 (400)
T PRK08013        286 LVGDAAHTIHPLAGQGVNLGFMDAAELIAELRRLHRQGKDIGQHLYLRRYERSRKHSAALMLAGMQGFRDLFAGN  360 (400)
T ss_pred             EEechhhcCCccccCchhhhHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            99999999999999999999999999999998542  122  235899999999999999999999898888653

>PRK06847 hypothetical protein; Provisional

Probab=100.00  E-value=5e-42  Score=329.82  Aligned_cols=339  Identities=25%  Similarity=0.245  Sum_probs=235.8

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ   85 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   85 (426)
                      ..||+||||||+||++|+.|++.|++|+|||+++.+..   .|+++.+.++++++|+++|+  .+.+.+.+.+.......
T Consensus         4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~---~g~g~~l~~~~~~~l~~~gl--~~~~~~~~~~~~~~~~~   78 (375)
T PRK06847          4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRV---YGAGITLQGNALRALRELGV--LDECLEAGFGFDGVDLF   78 (375)
T ss_pred             cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcc---CCceeeecHHHHHHHHHcCC--HHHHHHhCCCccceEEE
Confidence            46999999999999999999999999999999988653   57889999999999999987  55555544433221112


Q ss_pred             ccccccccccccc---cC-CCcchhccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEe
Q 014324           86 ATDNAKVTRTLAR---DD-NFNFRAAHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIK  159 (426)
Q Consensus        86 ~~~~~~~~~~~~~---~~-~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~  159 (426)
                      ...++.+......   .. ......++|..+.+.|.+.+. .++ +++++++++++.++  ..++++   +.+|++  ++
T Consensus        79 ~~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~~~v~---~~~g~~--~~  151 (375)
T PRK06847         79 DPDGTLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDD--DGVTVT---FSDGTT--GR  151 (375)
T ss_pred             CCCCCEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcC--CEEEEE---EcCCCE--EE
Confidence            2233322111100   01 122356889999999988775 477 99999999998543  356665   567765  89


Q ss_pred             ecEEEeccCCchhhhhhhcCC-CcccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEEEecCC
Q 014324          160 GNLLVAADGCLSSIRQSFLSD-FKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELLNK  238 (426)
Q Consensus       160 ~d~vI~AdG~~S~vR~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (426)
                      +|+||+|||.+|.+|+++.+. ..+.+.+...|.+.++.+..               .. ...++.+++..+.++|..++
T Consensus       152 ad~vI~AdG~~s~~r~~l~~~~~~~~~~g~~~~~~~~~~~~~---------------~~-~~~~~~~~~~~~~~~p~~~~  215 (375)
T PRK06847        152 YDLVVGADGLYSKVRSLVFPDEPEPEYTGQGVWRAVLPRPAE---------------VD-RSLMYLGPTTKAGVVPLSED  215 (375)
T ss_pred             cCEEEECcCCCcchhhHhcCCCCCceeccceEEEEEecCCCC---------------cc-ceEEEeCCCcEEEEEcCCCC
Confidence            999999999999999998554 35667788888776654321               00 11345567777888888776


Q ss_pred             eeeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccH-HHHHHhhhcC---cceEeeeeccCCCCccccccEEEe
Q 014324          239 RLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLP-EFVKVIKETK---EPFINAMYDCDPLKQIFWSNVVLI  314 (426)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~p~~~~~~~rv~Lv  314 (426)
                      ...+.+....+..        ...+.+.+.+.+.+....|.+ ....+.+...   ....+.+....+.++|..+|++|+
T Consensus       216 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~grv~Li  287 (375)
T PRK06847        216 LMYLFVTEPRPDN--------PRIEPDTLAALLRELLAPFGGPVLQELREQITDDAQVVYRPLETLLVPAPWHRGRVVLI  287 (375)
T ss_pred             eEEEEEeccCccc--------ccCChHHHHHHHHHHHhhcCchHHHHHHHhcCCccceeeccHhhccCCCCccCCeEEEE
Confidence            5543332221111        011233333444444555664 3444433211   112222322333456889999999


Q ss_pred             ccccccCCCCCcchhhhhHHHHHHHHHHHHhhccccHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhc
Q 014324          315 GDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQG  382 (426)
Q Consensus       315 GDAAh~~~P~~G~G~~~ai~Da~~La~~L~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~  382 (426)
                      |||||.|+|+.|||+|+||+||.+|+++|...  ...+++|+.|+++|+++++.+++.++.++.++.+
T Consensus       288 GDAaH~~~P~~GqG~n~aieDA~~La~~L~~~--~~~~~al~~Y~~~R~~r~~~~~~~s~~~~~~~~~  353 (375)
T PRK06847        288 GDAAHATTPHLAQGAGMAIEDAIVLAEELARH--DSLEAALQAYYARRWERCRMVVEASARIGRIEIE  353 (375)
T ss_pred             echhccCCCCccccHHHHHHHHHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHhhheecC
Confidence            99999999999999999999999999999864  5678999999999999999999999999887654

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=100.00  E-value=1.5e-42  Score=333.25  Aligned_cols=344  Identities=22%  Similarity=0.153  Sum_probs=230.3

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ   85 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   85 (426)
                      .+||+||||||+||++|+.|+++|++|+||||.+...  ...++++.|+++++++|+++|+  .+.+.....+.......
T Consensus         2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~--~~~~r~~~l~~~~~~~L~~lG~--~~~i~~~~~~~~~~~~~   77 (387)
T COG0654           2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPREL--LERGRGIALSPNALRALERLGL--WDRLEALGVPPLHVMVV   77 (387)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCcccc--ccCceeeeecHhHHHHHHHcCC--hhhhhhccCCceeeEEE
Confidence            4799999999999999999999999999999993221  2356899999999999999998  35666655543322222


Q ss_pred             ccccc-cccccc-cccCCCcchhccHHHHHHHHHhcCCC--Ce-eEeeeeEEEEEEecCCceEEEEEEecc-CCceEEEe
Q 014324           86 ATDNA-KVTRTL-ARDDNFNFRAAHWADLHGLLYNALPP--EI-FLRGHQYLSFCISEVKTTVTVKAKVLQ-TDEVIEIK  159 (426)
Q Consensus        86 ~~~~~-~~~~~~-~~~~~~~~~~~~r~~l~~~L~~~~~~--~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~-~g~~~~~~  159 (426)
                      ...+. .+.... ..........+.|..|++.|.+++.+  ++ ++++++|+.++.+++  .++++   ++ +|+  +++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~--~v~v~---l~~dG~--~~~  150 (387)
T COG0654          78 DDGGRRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGD--GVTVT---LSFDGE--TLD  150 (387)
T ss_pred             ecCCceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCC--ceEEE---EcCCCc--EEe
Confidence            22221 111111 11124456789999999999998863  47 999999999997554  45555   34 787  499


Q ss_pred             ecEEEeccCCchhhhhhhcCCCcccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEEEecCCe
Q 014324          160 GNLLVAADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELLNKR  239 (426)
Q Consensus       160 ~d~vI~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (426)
                      ||+||||||.+|.||+.+. ........|...+.+......            .| .....+.++.+.+.+.++|.++..
T Consensus       151 a~llVgADG~~S~vR~~~~-~~~~~~~~y~~~~l~~~~~~~------------~~-~~~~~~~~~~~~~~~~~~p~~~~~  216 (387)
T COG0654         151 ADLLVGADGANSAVRRAAG-IAEFSGRDYGQTALVANVEPE------------EP-HEGRAGERFTHAGPFALLPLPDNR  216 (387)
T ss_pred             cCEEEECCCCchHHHHhcC-CCCccCCCCCceEEEEEeecC------------CC-CCCeEEEEecCCCceEEEecCCCc
Confidence            9999999999999999986 111112123322323332211            11 223445566777788999999877


Q ss_pred             eeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHH-HHhhhcCcceEeeeeccCCCCccccccEEEecccc
Q 014324          240 LNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFV-KVIKETKEPFINAMYDCDPLKQIFWSNVVLIGDAA  318 (426)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~~~rv~LvGDAA  318 (426)
                      ...+|+......+.     ....+.+.+...+.   ..|..... ..+.... ...+.........+|..+|++|+||||
T Consensus       217 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~-~~~~~pl~~~~a~~~~~~Rv~LiGDAA  287 (387)
T COG0654         217 SSVVWSLPPGPAED-----LQGLSDEEFLRELQ---RRLGERDPLGRVTLVS-SRSAFPLSLRVAERYRRGRVVLIGDAA  287 (387)
T ss_pred             eeEEEECChhhHHH-----HhcCCHHHHHHHHH---HhcCcccccceEEEcc-ccccccccchhhhheecCcEEEEeecc
Confidence            88888776543221     11112222212111   11221110 0010000 111111113334567789999999999


Q ss_pred             ccCCCCCcchhhhhHHHHHHHHHHHHhhcc-ccHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhcC
Q 014324          319 HPTTPHGLRSTNMSILDAMVLGKSLEKWGV-EGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQGL  383 (426)
Q Consensus       319 h~~~P~~G~G~~~ai~Da~~La~~L~~~~~-~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~~  383 (426)
                      |.|+|+.|||+|+||+||.+|+++|..... ...+.+|+.|+++|++++..++..+..+.+.|...
T Consensus       288 H~~~P~~gQG~nlgl~Da~~La~~L~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~  353 (387)
T COG0654         288 HAMHPLAGQGANLALEDAAALAEALAAAPRPGADAAALAAYEARRRPRAEAIQKLSRALGRLFSAD  353 (387)
T ss_pred             ccCCCccccchhhhhhhHHHHHHHHHHHhhcCccHHHHHHHHHhhhhHHHHHHHHHHHHhhhhccC
Confidence            999999999999999999999999998743 12289999999999999999999999887777653

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=100.00  E-value=3.4e-43  Score=336.59  Aligned_cols=334  Identities=16%  Similarity=0.174  Sum_probs=220.3

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCC-CCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTG-SPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ   85 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~-~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   85 (426)
                      +||+||||||+|+++|+.|++.|++|+|+|+.+..... ...++++.++|+++++|+++|+  .+.+.....+.......
T Consensus         2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl--~~~l~~~~~~~~~~~~~   79 (374)
T PRK06617          2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDI--WEELEKFVAEMQDIYVV   79 (374)
T ss_pred             ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCc--HHHHHhhcCCCcEEEEE
Confidence            58999999999999999999999999999998543211 1246889999999999999998  45555444332221111


Q ss_pred             ccccccccccccccCCCcchhccHHHHHHHHHhcCCC--Ce-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecE
Q 014324           86 ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPP--EI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNL  162 (426)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~--~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~  162 (426)
                      ..++...............+.++|..|++.|.+.+.+  ++ ++++++++++..++  ..++++   +.++   +++||+
T Consensus        80 ~~~g~~~~~~~~~~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~--~~v~v~---~~~~---~~~adl  151 (374)
T PRK06617         80 DNKASEILDLRNDADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHN--DYSIIK---FDDK---QIKCNL  151 (374)
T ss_pred             ECCCceEEEecCCCCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcC--CeEEEE---EcCC---EEeeCE
Confidence            2222211111111111234678999999999998764  36 88999999998544  356666   4444   389999


Q ss_pred             EEeccCCchhhhhhhcCCC-cccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEEEecCCe-e
Q 014324          163 LVAADGCLSSIRQSFLSDF-KLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELLNKR-L  240 (426)
Q Consensus       163 vI~AdG~~S~vR~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  240 (426)
                      ||||||.+|++|++++.+. ...|  ...+...++.+.              +... ..+.++.+.++++++|++++. .
T Consensus       152 vIgADG~~S~vR~~l~~~~~~~~y--~~~~~~~v~~~~--------------~~~~-~~~~~~~~~g~~~~lPl~~~~~~  214 (374)
T PRK06617        152 LIICDGANSKVRSHYFANEIEKPY--QTALTFNIKHEK--------------PHEN-CAMEHFLPLGPFALLPLKDQYAS  214 (374)
T ss_pred             EEEeCCCCchhHHhcCCCcccccC--CeEEEEEEeccC--------------CCCC-EEEEEecCCCCEEEeECCCCCeE
Confidence            9999999999999986543 2334  233333333221              1111 223344555668888998775 4


Q ss_pred             eEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcceEeeeeccCCCCccccccEEEecccccc
Q 014324          241 NWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDPLKQIFWSNVVLIGDAAHP  320 (426)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~rv~LvGDAAh~  320 (426)
                      .++|....+...     .....+.+.+.+.++..   +.+.+.+ +........+++... ++++|..+|++|+|||||+
T Consensus       215 ~~vw~~~~~~~~-----~~~~~~~~~~~~~~~~~---~~~~~~~-i~~~~~~~~~~l~~~-~~~~~~~grv~LiGDAAH~  284 (374)
T PRK06617        215 SVIWSTSSDQAA-----LIVNLPVEEVRFLTQRN---AGNSLGK-ITIDSEISSFPLKAR-IANRYFHNRIVLIADTAHT  284 (374)
T ss_pred             EEEEeCCHHHHH-----HHHcCCHHHHHHHHHHh---hchhcCc-eeeccceeEEEeeee-eccceecCCEEEEEccccc
Confidence            666655321100     00111222232222211   1122222 111111223333323 5678999999999999999


Q ss_pred             CCCCCcchhhhhHHHHHHHHHHHHhhccccHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhcC
Q 014324          321 TTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQGL  383 (426)
Q Consensus       321 ~~P~~G~G~~~ai~Da~~La~~L~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~~  383 (426)
                      |+|+.|||+|+||+||..|+++|..      ..+|++|+++|++++..++..+..+.++|+..
T Consensus       285 ~~P~~GQG~n~gl~Da~~La~~L~~------~~~L~~Ye~~R~~~~~~~~~~t~~l~~~f~~~  341 (374)
T PRK06617        285 VHPLAGQGLNQGIKDIEILSMIVSN------NGTLQEYQKLRQEDNFIMYKLTDELNNIFSNY  341 (374)
T ss_pred             CCCCccccHHHHHHHHHHHHHHHcC------cchHHHHHHHHhHHHHHHHHHHHHHHHHHcCC
Confidence            9999999999999999999999842      25799999999999999999999999998754

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=100.00  E-value=7.3e-43  Score=333.36  Aligned_cols=339  Identities=23%  Similarity=0.262  Sum_probs=214.2

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeec-cc
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTID-QN   84 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~   84 (426)
                      .+||+||||||+||++|+.|+++|++|+||||++.+..   .++++.+.++++++|+++|+  .+.+.+...+.... ..
T Consensus         1 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~---~~~~~~l~~~~~~~l~~lgl--~~~~~~~~~~~~~~~~~   75 (356)
T PF01494_consen    1 EYDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRP---KGRGIGLSPNSLRILQRLGL--LDEILARGSPHEVMRIF   75 (356)
T ss_dssp             EEEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCC---SSSSEEEEHHHHHHHHHTTE--HHHHHHHSEEECEEEEE
T ss_pred             CceEEEECCCHHHHHHHHHHHhcccccccchhcccccc---cccccccccccccccccccc--hhhhhhhcccccceeeE
Confidence            37999999999999999999999999999999999764   45788999999999999998  66666655432211 11


Q ss_pred             cccc--cc-------ccccccc-ccCCCcchhccHHHHHHHHHhcCCC-Ce-eEeeeeEEEEEEecCCceEEEEEEeccC
Q 014324           85 QATD--NA-------KVTRTLA-RDDNFNFRAAHWADLHGLLYNALPP-EI-FLRGHQYLSFCISEVKTTVTVKAKVLQT  152 (426)
Q Consensus        85 ~~~~--~~-------~~~~~~~-~~~~~~~~~~~r~~l~~~L~~~~~~-~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~  152 (426)
                      ....  +.       ....... .........+.|..|++.|.+.+++ ++ +++++++++++.+.+  .+++.+.+..+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~--~~~~~~~~~~~  153 (356)
T PF01494_consen   76 FYDGISDSRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDDD--GVTVVVRDGED  153 (356)
T ss_dssp             EEEETTTSEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEETT--EEEEEEEETCT
T ss_pred             eecccCCccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhhhheeeeeccccccccc--ccccccccccC
Confidence            1111  00       0001111 1223345678999999999998764 78 999999999986554  55555555667


Q ss_pred             CceEEEeecEEEeccCCchhhhhhhcCCCcccccce-EEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEE
Q 014324          153 DEVIEIKGNLLVAADGCLSSIRQSFLSDFKLRYSGY-CAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSV  231 (426)
Q Consensus       153 g~~~~~~~d~vI~AdG~~S~vR~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (426)
                      |+.++++||+||+|||++|+||+++..+.......+ ..+..+.......      .     +... ..++...+...++
T Consensus       154 g~~~~i~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~-----~~~~-~~~~~~~~~~~~~  221 (356)
T PF01494_consen  154 GEEETIEADLVVGADGAHSKVRKQLGIDRPGPDTVYRWGWFGIVFDSDLS------D-----PWED-HCFIYSPPSGGFA  221 (356)
T ss_dssp             CEEEEEEESEEEE-SGTT-HHHHHTTGGEEEEEEEEEEEEEEEEEECHSH------T-----TTSC-EEEEEEETTEEEE
T ss_pred             CceeEEEEeeeecccCcccchhhhccccccCccccccccccccccccccc------c-----cccc-cccccccccccee
Confidence            887789999999999999999999854422111111 2222222211110      0     0001 2333444555567


Q ss_pred             EEEecC-CeeeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcceEeeeeccCCCCcccccc
Q 014324          232 FYELLN-KRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDPLKQIFWSN  310 (426)
Q Consensus       232 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~r  310 (426)
                      ++|..+ +...+.+.+.........   .   .....+.+.+.....+.+.....  .......+... ..+.++|..+|
T Consensus       222 ~~p~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~gr  292 (356)
T PF01494_consen  222 IIPLENGDRSRFVWFLPFDESKEER---P---EEFSPEELFANLPEIFGPDLLET--EIDEISAWPIP-QRVADRWVKGR  292 (356)
T ss_dssp             EEEETTTTEEEEEEEEETTTTTCCS---T---HCHHHHHHHHHHHHHHHTCHHHH--EEEEEEEEEEE-EEEESSSEETT
T ss_pred             EeeccCCccceEEEeeecccccccc---c---ccccccccccccccccccccccc--ccccccccccc-cccccccccce
Confidence            888877 445555555544322111   1   11112222221111111111111  11111122221 33455688899


Q ss_pred             EEEeccccccCCCCCcchhhhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHhhhhhHHHHHHH
Q 014324          311 VVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWG-VEGLLSALEEYQTVRLPVTSKQVLH  372 (426)
Q Consensus       311 v~LvGDAAh~~~P~~G~G~~~ai~Da~~La~~L~~~~-~~~~~~~L~~Y~~~R~~~~~~~~~~  372 (426)
                      |+|||||||.|+|+.|||+|+||+||..|+++|.... +...+++|+.|+++|+++++++++.
T Consensus       293 v~LiGDAAh~~~P~~GqG~n~Ai~da~~La~~L~~~~~g~~~~~~l~~Y~~~r~~~~~~~~~~  355 (356)
T PF01494_consen  293 VLLIGDAAHAMDPFSGQGINMAIEDAAALAELLAAALKGEASEEALKAYEQERRPRARKAVQF  355 (356)
T ss_dssp             EEE-GGGTEEE-CCTSHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEeccceeeecccccCCCCcccccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999999999874 3677899999999999999998875

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=100.00  E-value=8.7e-42  Score=328.09  Aligned_cols=346  Identities=15%  Similarity=0.115  Sum_probs=218.1

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ   85 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   85 (426)
                      .+||+||||||+|+++|+.|+++|++|+||||.+.+......+.+. +.++++++|+++|+  .+.+...+.+.......
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~-l~~~~~~~L~~lGl--~~~l~~~~~~~~~~~~~   78 (390)
T TIGR02360         2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGV-LEQGTVDLLREAGV--DERMDREGLVHEGTEIA   78 (390)
T ss_pred             CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEee-ECHHHHHHHHHCCC--hHHHHhcCceecceEEe
Confidence            3799999999999999999999999999999998643212234444 89999999999998  66666655443211111


Q ss_pred             ccccccccccccc-cCCCcchhccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecE
Q 014324           86 ATDNAKVTRTLAR-DDNFNFRAAHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNL  162 (426)
Q Consensus        86 ~~~~~~~~~~~~~-~~~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~  162 (426)
                       ..+......... ....+.....+..+.+.|.+.+. .++ ++++++++.+... +...+.|++.  .+|+..++++|+
T Consensus        79 -~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~-~~~~~~V~~~--~~g~~~~i~adl  154 (390)
T TIGR02360        79 -FDGQRFRIDLKALTGGKTVMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDL-AGDRPYVTFE--RDGERHRLDCDF  154 (390)
T ss_pred             -eCCEEEEEeccccCCCceEEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEec-CCCccEEEEE--ECCeEEEEEeCE
Confidence             122111000111 01111112346677788877664 366 8899988887642 2234445421  367666699999


Q ss_pred             EEeccCCchhhhhhhcCCCcccccce--EEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEEEecCCee
Q 014324          163 LVAADGCLSSIRQSFLSDFKLRYSGY--CAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELLNKRL  240 (426)
Q Consensus       163 vI~AdG~~S~vR~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (426)
                      ||||||.+|.||+++.....+.+.++  ..|.+++...+..              ....  ++.+++..+.++|++++..
T Consensus       155 vIGADG~~S~VR~~l~~~~~~~~~~~~~~~~~~l~~~~~~~--------------~~~~--~~~~~~~~~~~~~~~~~~~  218 (390)
T TIGR02360       155 IAGCDGFHGVSRASIPAEVLKEFERVYPFGWLGILSETPPV--------------SHEL--IYSNHERGFALCSMRSATR  218 (390)
T ss_pred             EEECCCCchhhHHhcCcccceeeeccCCcceEEEecCCCCC--------------CCce--EEEeCCCceEEEeccCCCc
Confidence            99999999999999855444445544  3566655422110              0111  2334455566667654332


Q ss_pred             -eEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcceEe-eeeccCCCCccccccEEEecccc
Q 014324          241 -NWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFIN-AMYDCDPLKQIFWSNVVLIGDAA  318 (426)
Q Consensus       241 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~rv~LvGDAA  318 (426)
                       .|.+.+  +.... .    ...+.+.+.+.+.   ..+.+.+.+.+........+ ........++|..||++|+||||
T Consensus       219 ~~~~~~~--~~~~~-~----~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~grvvLvGDAA  288 (390)
T TIGR02360       219 SRYYVQV--PLTDK-V----EDWSDDRFWAELK---RRLPSEAAERLVTGPSIEKSIAPLRSFVCEPMQYGRLFLAGDAA  288 (390)
T ss_pred             ceEEEEc--CCCCC-h----hhCChhHHHHHHH---HhcCchhhhhhccCCccceeeeeHHhhccccCccCCEEEEEccc
Confidence             233332  22110 0    0011111122121   22334444443322211111 01112234567889999999999


Q ss_pred             ccCCCCCcchhhhhHHHHHHHHHHHHhhccccHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhcCC
Q 014324          319 HPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQGLA  384 (426)
Q Consensus       319 h~~~P~~G~G~~~ai~Da~~La~~L~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~~~  384 (426)
                      |.|+|+.|||+|+||+||.+|+++|......+.+.+|+.|++.|++|++.+++.++.++++++.+.
T Consensus       289 H~~~P~~GQG~n~aieDA~~La~~L~~~~~~~~~~al~~Y~~~R~~r~~~~~~~s~~~~~~~~~~~  354 (390)
T TIGR02360       289 HIVPPTGAKGLNLAASDVHYLYEALLEHYQEGSSAGIEGYSARALARVWKAERFSWWMTSLLHRFP  354 (390)
T ss_pred             cCCCCCcCCchhHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            999999999999999999999999987644567899999999999999999999999999988664

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=100.00  E-value=8.9e-42  Score=329.08  Aligned_cols=347  Identities=14%  Similarity=0.081  Sum_probs=212.3

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ   85 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   85 (426)
                      ++||+||||||+||++|+.|+++|++|+|+||++.+......+. ..+.|+++++|+++|+  .+.+...+.+...... 
T Consensus         2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a-~~l~~~~~~~l~~lGl--~~~l~~~~~~~~~~~~-   77 (392)
T PRK08243          2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRA-GVLEQGTVDLLREAGV--GERMDREGLVHDGIEL-   77 (392)
T ss_pred             cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccce-eEECHhHHHHHHHcCC--hHHHHhcCCccCcEEE-
Confidence            47999999999999999999999999999999986432222233 3489999999999998  6666665544221111 


Q ss_pred             cccccccccccccc-CCCcchhccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecE
Q 014324           86 ATDNAKVTRTLARD-DNFNFRAAHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNL  162 (426)
Q Consensus        86 ~~~~~~~~~~~~~~-~~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~  162 (426)
                      ..+++......... .......++|..+.+.|.+.+. .++ +++++++++++.. +...+.|++  ..+|+..+++||+
T Consensus        78 ~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~-~~~~~~V~~--~~~G~~~~i~ad~  154 (392)
T PRK08243         78 RFDGRRHRIDLTELTGGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDF-DSDRPYVTY--EKDGEEHRLDCDF  154 (392)
T ss_pred             EECCEEEEeccccccCCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEec-CCCceEEEE--EcCCeEEEEEeCE
Confidence            12232111011100 1122334567777777766543 577 9999999998741 333455553  2467766799999


Q ss_pred             EEeccCCchhhhhhhcCCCcccccce--EEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEEEecCCee
Q 014324          163 LVAADGCLSSIRQSFLSDFKLRYSGY--CAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELLNKRL  240 (426)
Q Consensus       163 vI~AdG~~S~vR~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (426)
                      ||||||.+|.||+++.......+...  ..|.+++...+              +... ...+...+....++++.+++..
T Consensus       155 vVgADG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~-~~~~~~~~~~~~~~~~~~~~~~  219 (392)
T PRK08243        155 IAGCDGFHGVSRASIPAGALRTFERVYPFGWLGILAEAP--------------PVSD-ELIYANHERGFALCSMRSPTRS  219 (392)
T ss_pred             EEECCCCCCchhhhcCcchhhceecccCceEEEEeCCCC--------------CCCC-ceEEeeCCCceEEEecCCCCcE
Confidence            99999999999999854433333332  33444332111              0001 1112223334444443344444


Q ss_pred             eEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcceEeeeeccCCCCccccccEEEecccccc
Q 014324          241 NWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDPLKQIFWSNVVLIGDAAHP  320 (426)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~rv~LvGDAAh~  320 (426)
                      .+.+.+.....   ...+   ......+.+.. ....+.  ...+..................++|..||++|||||||.
T Consensus       220 ~~~~~~~~~~~---~~~~---~~~~~~~~l~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~grvvLvGDAAH~  290 (392)
T PRK08243        220 RYYLQCPLDDK---VEDW---SDERFWDELRR-RLPPED--AERLVTGPSIEKSIAPLRSFVAEPMQYGRLFLAGDAAHI  290 (392)
T ss_pred             EEEEEecCCCC---cccC---ChhHHHHHHHH-hcCccc--ccccccCccccccceeeeeceeccceeCCEEEEeccccc
Confidence            44433322111   0000   11222222222 111110  000010000000000111223456788999999999999


Q ss_pred             CCCCCcchhhhhHHHHHHHHHHHHhhccccHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhcC
Q 014324          321 TTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQGL  383 (426)
Q Consensus       321 ~~P~~G~G~~~ai~Da~~La~~L~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~~  383 (426)
                      ++|++|||+|+||+||.+|+++|......+.+++|+.|+++|+++++.++..+..+.++++..
T Consensus       291 ~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~~~~L~~Ye~~r~~r~~~~~~~~~~~~~~~~~~  353 (392)
T PRK08243        291 VPPTGAKGLNLAASDVRYLARALVEFYREGDTALLDAYSATALRRVWKAERFSWWMTSMLHRF  353 (392)
T ss_pred             CCCCcCcchhHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            999999999999999999999998864345689999999999999999999999999988765

>PRK06184 hypothetical protein; Provisional

Probab=100.00  E-value=8.1e-42  Score=339.23  Aligned_cols=340  Identities=18%  Similarity=0.135  Sum_probs=217.6

Q ss_pred             CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecc
Q 014324            4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQ   83 (426)
Q Consensus         4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~   83 (426)
                      |+.+||+||||||+||++|+.|+++|++|+||||.+.+..   .+++..++++++++|+++|+  .+.+.+.+.+.....
T Consensus         1 ~~~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~---~~ra~~l~~~~~e~l~~lGl--~~~l~~~~~~~~~~~   75 (502)
T PRK06184          1 YTTTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFP---GSRGKGIQPRTQEVFDDLGV--LDRVVAAGGLYPPMR   75 (502)
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCc---CccceeecHHHHHHHHHcCc--HHHHHhcCcccccee
Confidence            4568999999999999999999999999999999988753   45778899999999999998  566666554432111


Q ss_pred             cccccccccccccc------ccCCC-cchhccHHHHHHHHHhcCCC-Ce-eEeeeeEEEEEEecCCceEEEEEEeccCCc
Q 014324           84 NQATDNAKVTRTLA------RDDNF-NFRAAHWADLHGLLYNALPP-EI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDE  154 (426)
Q Consensus        84 ~~~~~~~~~~~~~~------~~~~~-~~~~~~r~~l~~~L~~~~~~-~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~  154 (426)
                      .+...+........      ....+ ....++|..+++.|.+.+.+ ++ +++++++++++.+++  .|++++.+..++ 
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~--~v~v~~~~~~~~-  152 (502)
T PRK06184         76 IYRDDGSVAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDAD--GVTARVAGPAGE-  152 (502)
T ss_pred             EEeCCceEEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCC--cEEEEEEeCCCe-
Confidence            11111211100000      01111 23467889999999987764 77 999999999986443  566654332333 


Q ss_pred             eEEEeecEEEeccCCchhhhhhhcCCCccc-ccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCC-ceEEE
Q 014324          155 VIEIKGNLLVAADGCLSSIRQSFLSDFKLR-YSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASG-THSVF  232 (426)
Q Consensus       155 ~~~~~~d~vI~AdG~~S~vR~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  232 (426)
                       .+++||+||+|||++|.||+++....... +.....+...+..+.             .+.  ...+.+..+. +.+.+
T Consensus       153 -~~i~a~~vVgADG~~S~vR~~lgi~~~g~~~~~~~~~~~~~~~~~-------------~~~--~~~~~~~~~~~~~~~~  216 (502)
T PRK06184        153 -ETVRARYLVGADGGRSFVRKALGIGFPGETLGIDRMLVADVSLTG-------------LDR--DAWHQWPDGDMGMIAL  216 (502)
T ss_pred             -EEEEeCEEEECCCCchHHHHhCCCCcccCcCCCceEEEEEEEeec-------------CCC--cceEEccCCCCcEEEE
Confidence             35899999999999999999985433211 111011111111110             010  1122233333 66777


Q ss_pred             EEecCCeeeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcceEeeeec--cCCCCcccccc
Q 014324          233 YELLNKRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYD--CDPLKQIFWSN  310 (426)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~~~~~~~r  310 (426)
                      +|++++.. |.+++..+...      ....+.+.+.+.+..... +.+ + . +.   .......+.  ....++|..||
T Consensus       217 ~p~~~~~~-~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~-~~~-~-~-~~---~~~~~~~~~~~~~~a~~~~~gR  282 (502)
T PRK06184        217 CPLPGTDL-FQIQAPLPPGG------EPDLSADGLTALLAERTG-RTD-I-R-LH---SVTWASAFRMNARLADRYRVGR  282 (502)
T ss_pred             EEccCCCe-EEEEEEcCCCc------cCCCCHHHHHHHHHHhcC-CCC-c-c-ee---eeeeeeccccceeEhhhhcCCc
Confidence            88876542 34444332211      111234444444432211 110 0 0 00   011111111  22246788899


Q ss_pred             EEEeccccccCCCCCcchhhhhHHHHHHHHHHHHhhccccHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhh
Q 014324          311 VVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQ  381 (426)
Q Consensus       311 v~LvGDAAh~~~P~~G~G~~~ai~Da~~La~~L~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~  381 (426)
                      |+|+|||||.|+|++|||||+||+||.+|+|+|+.......+.+|++|+++|+++++.+++.+..+.+.+.
T Consensus       283 v~L~GDAAH~~~P~~GqG~n~gi~DA~~LawkLa~vl~g~~~~lL~~Ye~eR~p~~~~~~~~s~~~~~~~~  353 (502)
T PRK06184        283 VFLAGDAAHVHPPAGGQGLNTSVQDAYNLGWKLAAVLAGAPEALLDTYEEERRPVAAAVLGLSTELLDAIK  353 (502)
T ss_pred             EEEeccccccCCCcccccccchHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999987633367889999999999999999999988776653

>PRK06126 hypothetical protein; Provisional

Probab=100.00  E-value=8e-42  Score=342.84  Aligned_cols=351  Identities=17%  Similarity=0.155  Sum_probs=227.2

Q ss_pred             CCCCCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCccee
Q 014324            1 MEKKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLT   80 (426)
Q Consensus         1 m~~~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~   80 (426)
                      ||++..+||+||||||+||++|+.|+++|++|+||||.+.+..   .++++.++++++++|+++|+  .+.+.+.+.+..
T Consensus         2 ~~~~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~---~~ra~~l~~r~~e~L~~lGl--~~~l~~~g~~~~   76 (545)
T PRK06126          2 MENTSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAF---NPKANTTSARSMEHFRRLGI--ADEVRSAGLPVD   76 (545)
T ss_pred             CCCCccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCC---CCccccCCHHHHHHHHhcCh--HHHHHhhcCCcc
Confidence            5677789999999999999999999999999999999986543   55788899999999999998  666766654431


Q ss_pred             ec----cccccccccccccccc----------------cCCCcchhccHHHHHHHHHhcCC--CCe-eEeeeeEEEEEEe
Q 014324           81 ID----QNQATDNAKVTRTLAR----------------DDNFNFRAAHWADLHGLLYNALP--PEI-FLRGHQYLSFCIS  137 (426)
Q Consensus        81 ~~----~~~~~~~~~~~~~~~~----------------~~~~~~~~~~r~~l~~~L~~~~~--~~~-i~~~~~v~~~~~~  137 (426)
                      ..    +.....++.+......                ........++|..+++.|.+.+.  .++ +++++++++++.+
T Consensus        77 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~  156 (545)
T PRK06126         77 YPTDIAYFTRLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQD  156 (545)
T ss_pred             ccCCceEEecCCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEEC
Confidence            10    1111122211111000                01112456889999999998764  367 9999999999854


Q ss_pred             cCCceEEEEEEeccCCceEEEeecEEEeccCCchhhhhhhcCCCcc-cccceEEEEEEeeCCCCCchHHHhhhhcccCCC
Q 014324          138 EVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSIRQSFLSDFKL-RYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDL  216 (426)
Q Consensus       138 ~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~vR~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (426)
                      +  ..|++++.+..+|+..++++|+||+|||++|.||+++...... .+..+. ....+..+...  .       ..+..
T Consensus       157 ~--~~v~v~~~~~~~g~~~~i~ad~vVgADG~~S~VR~~lgi~~~g~~~~~~~-~~~~~~~~~l~--~-------~~~~~  224 (545)
T PRK06126        157 A--DGVTATVEDLDGGESLTIRADYLVGCDGARSAVRRSLGISYEGTSGLQRD-LSIYIRAPGLA--A-------LVGHD  224 (545)
T ss_pred             C--CeEEEEEEECCCCcEEEEEEEEEEecCCcchHHHHhcCCccccCCCcceE-EEEEEEcCchH--H-------HhcCC
Confidence            3  4566666555678767799999999999999999998533211 111111 11122221110  0       01111


Q ss_pred             CceeeEecCCCceEEEEEecCCeeeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcceEee
Q 014324          217 GKCLYFDLASGTHSVFYELLNKRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINA  296 (426)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (426)
                      ....+++.+++...++++.+.+. .|.+. ..+....     ....+.+.+.+.+....   ...+...+.   ....|.
T Consensus       225 ~~~~~~~~~p~~~~~~~~~~~~~-~~~~~-~~~~~~~-----~~~~~~~~~~~~~~~~~---~~~~~~~i~---~~~~w~  291 (545)
T PRK06126        225 PAWMYWLFNPDRRGVLVAIDGRD-EWLFH-QLRGGED-----EFTIDDVDARAFVRRGV---GEDIDYEVL---SVVPWT  291 (545)
T ss_pred             CceEEEEECCCccEEEEEECCCC-eEEEE-EecCCCC-----CCCCCHHHHHHHHHHhc---CCCCCeEEE---eecccc
Confidence            22335556777676777765543 34433 1111110     00112222333322211   111100000   011122


Q ss_pred             eeccCCCCccccccEEEeccccccCCCCCcchhhhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHhhhhhHHHHHHHHHH
Q 014324          297 MYDCDPLKQIFWSNVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWG-VEGLLSALEEYQTVRLPVTSKQVLHSRR  375 (426)
Q Consensus       297 ~~~~~p~~~~~~~rv~LvGDAAh~~~P~~G~G~~~ai~Da~~La~~L~~~~-~~~~~~~L~~Y~~~R~~~~~~~~~~~~~  375 (426)
                       .....+++|..|||+|+|||||.|+|++|||+|+||+||.+|+|+|.... ....+.+|+.|+++|+++++.+++.+..
T Consensus       292 -~~~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~N~gieDa~~La~~La~~~~~~~~~~lL~~Y~~eR~p~~~~~~~~s~~  370 (545)
T PRK06126        292 -GRRLVADSYRRGRVFLAGDAAHLFTPTGGYGMNTGIGDAVNLAWKLAAVLNGWAGPALLDSYEAERRPIAARNTDYARR  370 (545)
T ss_pred             -hhheehhhhccCCEEEechhhccCCCCcCcccchhHHHHHHHHHHHHHHHcCCCcHHHHhhhHHHhhHHHHHHHHHHHH
Confidence             22445677888999999999999999999999999999999999998763 3456799999999999999999999998


Q ss_pred             hhhhhhc
Q 014324          376 LGRIKQG  382 (426)
Q Consensus       376 ~~~~~~~  382 (426)
                      +...+..
T Consensus       371 ~~~~~~~  377 (545)
T PRK06126        371 NADALGS  377 (545)
T ss_pred             HHHHhcc
Confidence            8776543

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=100.00  E-value=1e-41  Score=330.18  Aligned_cols=345  Identities=16%  Similarity=0.162  Sum_probs=222.5

Q ss_pred             CCCCCCccEEEEcCChHHHHHHHHHHHcCCcEEEEccc-CCCCC-CCCCcceeccChhHHHHHHHHhcCCchhhhcc-Cc
Q 014324            1 MEKKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKA-GGPPT-GSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLA-TV   77 (426)
Q Consensus         1 m~~~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~-~~~~~-~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~-~~   77 (426)
                      ||  ..+||+||||||+|+++|+.|+++|++|+|+|+. +.+.. ..+..++..++++++++|+++|+  .+.+.+. ..
T Consensus         1 ~m--~~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl--~~~l~~~~~~   76 (405)
T PRK08850          1 MM--QSVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGA--WQGIEARRAA   76 (405)
T ss_pred             CC--CcCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCc--hhhhhhhhCC
Confidence            55  4689999999999999999999999999999997 32211 11124678899999999999998  5666543 33


Q ss_pred             ceeecccccccccccccccc--ccC-C-CcchhccHHHHHHHHHhcCCC--Ce-eEeeeeEEEEEEecCCceEEEEEEec
Q 014324           78 PLTIDQNQATDNAKVTRTLA--RDD-N-FNFRAAHWADLHGLLYNALPP--EI-FLRGHQYLSFCISEVKTTVTVKAKVL  150 (426)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~--~~~-~-~~~~~~~r~~l~~~L~~~~~~--~~-i~~~~~v~~~~~~~~~~~v~v~~~~~  150 (426)
                      +... ...+ ++........  ... . ...+.+.+..+++.|.+.+.+  ++ +++++++++++.+++  .++++   +
T Consensus        77 ~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~--~~~v~---~  149 (405)
T PRK08850         77 PYIA-MEVW-EQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGES--EAWLT---L  149 (405)
T ss_pred             cccE-EEEE-eCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCC--eEEEE---E
Confidence            3211 1111 1111111110  001 1 113457788899988887653  67 999999999986443  56665   5


Q ss_pred             cCCceEEEeecEEEeccCCchhhhhhhcCCCcccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceE
Q 014324          151 QTDEVIEIKGNLLVAADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHS  230 (426)
Q Consensus       151 ~~g~~~~~~~d~vI~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (426)
                      ++|++  ++||+||+|||.+|.+|+++.........+...+.+.+..+.              +.. ...+.++++++.+
T Consensus       150 ~~g~~--~~a~lvIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~v~~~~--------------~~~-~~~~~~~~~~g~~  212 (405)
T PRK08850        150 DNGQA--LTAKLVVGADGANSWLRRQMDIPLTHWDYGHSALVANVRTVD--------------PHN-SVARQIFTPQGPL  212 (405)
T ss_pred             CCCCE--EEeCEEEEeCCCCChhHHHcCCCeeEEeeccEEEEEEEEccC--------------CCC-CEEEEEEcCCCce
Confidence            67764  899999999999999999986544333334455555554321              111 1334456777788


Q ss_pred             EEEEecCC-eeeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcceEeeeeccCCCCccccc
Q 014324          231 VFYELLNK-RLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDPLKQIFWS  309 (426)
Q Consensus       231 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  309 (426)
                      .++|++++ ..++.|..+......     ....+.+.+.+.+.   ..+.+.+.. ++.......+++. ....++|..+
T Consensus       213 ~~lp~~~~~~~~~~w~~~~~~~~~-----~~~~~~~~~~~~l~---~~~~~~~~~-~~~~~~~~~~pl~-~~~~~~~~~~  282 (405)
T PRK08850        213 AFLPMSEPNMSSIVWSTEPLRAEA-----LLAMSDEQFNKALT---AEFDNRLGL-CEVVGERQAFPLK-MRYARDFVRE  282 (405)
T ss_pred             EEEECCCCCeEEEEEECCHHHHHH-----HHcCCHHHHHHHHH---HHHhhhhCc-EEEcccccEEecc-eeeccccccC
Confidence            88898764 456666553211100     00011111111111   111111110 1101111111221 2335678889


Q ss_pred             cEEEeccccccCCCCCcchhhhhHHHHHHHHHHHHhhc----cccHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhcC
Q 014324          310 NVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWG----VEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQGL  383 (426)
Q Consensus       310 rv~LvGDAAh~~~P~~G~G~~~ai~Da~~La~~L~~~~----~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~~  383 (426)
                      |++|+|||||.++|+.|||+|+||+||.+|+++|....    ....+.+|+.|+++|+++++.++..+..+.++|+..
T Consensus       283 rv~LiGDAAH~~~P~~GQG~n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~l~~~~~~~  360 (405)
T PRK08850        283 RVALVGDAAHTIHPLAGQGVNLGLLDAASLAQEILALWQQGRDIGLKRNLRGYERWRKAEAAKMIAAMQGFRDLFSGS  360 (405)
T ss_pred             cEEEEEhhhhcCCccccccHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHCCC
Confidence            99999999999999999999999999999999998642    113478999999999999999999999999998753

>PLN02985 squalene monooxygenase

Probab=100.00  E-value=1.4e-41  Score=334.34  Aligned_cols=382  Identities=14%  Similarity=0.136  Sum_probs=248.9

Q ss_pred             CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecc
Q 014324            4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQ   83 (426)
Q Consensus         4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~   83 (426)
                      ...+||+||||||+|+++|+.|+++|++|+|+||......   .+.|+.++|++.++|+++|+  .+.+..........+
T Consensus        41 ~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~---~~~g~~L~p~g~~~L~~LGl--~d~l~~~~~~~~~~~  115 (514)
T PLN02985         41 DGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPE---RMMGEFMQPGGRFMLSKLGL--EDCLEGIDAQKATGM  115 (514)
T ss_pred             CCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCc---cccccccCchHHHHHHHcCC--cchhhhccCcccccE
Confidence            3568999999999999999999999999999999865432   44688999999999999998  555554332211122


Q ss_pred             cccccccccccccc-ccC----CCcchhccHHHHHHHHHhcCCC--Ce-eEeeeeEEEEEEecCCceEEEEEEeccCCce
Q 014324           84 NQATDNAKVTRTLA-RDD----NFNFRAAHWADLHGLLYNALPP--EI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEV  155 (426)
Q Consensus        84 ~~~~~~~~~~~~~~-~~~----~~~~~~~~r~~l~~~L~~~~~~--~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~  155 (426)
                      ..+.+++....... ...    ....+.++|..|.+.|.+.+.+  ++ ++.+ +++++..+ ++..+.|++. .++|++
T Consensus       116 ~v~~~g~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i~~g-tvv~li~~-~~~v~gV~~~-~~dG~~  192 (514)
T PLN02985        116 AVYKDGKEAVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNVRLEEG-TVKSLIEE-KGVIKGVTYK-NSAGEE  192 (514)
T ss_pred             EEEECCEEEEEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCeEEEee-eEEEEEEc-CCEEEEEEEE-cCCCCE
Confidence            22233332111111 111    1123578899999999987743  56 6655 56666543 3322334432 457777


Q ss_pred             EEEeecEEEeccCCchhhhhhhcCCCcccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEEEe
Q 014324          156 IEIKGNLLVAADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYEL  235 (426)
Q Consensus       156 ~~~~~d~vI~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (426)
                      .+++||+||+|||.+|++|+++.......++....|.   .....          ...+.   ..+++++++.+++++|+
T Consensus       193 ~~~~AdLVVgADG~~S~vR~~l~~~~~~~~s~~~~~~---~~~~~----------~~~~~---~~~~~~~~~~~~l~ypi  256 (514)
T PLN02985        193 TTALAPLTVVCDGCYSNLRRSLNDNNAEVLSYQVGYI---SKNCR----------LEEPE---KLHLIMSKPSFTMLYQI  256 (514)
T ss_pred             EEEECCEEEECCCCchHHHHHhccCCCcceeEeEEEE---Ecccc----------CCCCC---cceEEcCCCceEEEEEe
Confidence            6788999999999999999998643332222222222   11100          00121   22456678888999999


Q ss_pred             cCCeeeEEEEEecCCCCcCCCcceeccCHHHHHHHHHH-HhhcccHHHHHHhhh-cCcc--eEeeeeccCCCCccccccE
Q 014324          236 LNKRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEE-AEKVWLPEFVKVIKE-TKEP--FINAMYDCDPLKQIFWSNV  311 (426)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~p~~~~~~~rv  311 (426)
                      ++++.++.+.++.+...       . .....+..++.. ..+.+.+.+++.+.. .+..  .........|...+..+|+
T Consensus       257 ~~~~~~~~~~~~~~~~~-------~-~~~~~~~~~~~~~~~p~~p~~l~~~f~~~~~~~~~~~~~p~~~l~~~~~~~~~v  328 (514)
T PLN02985        257 SSTDVRCVFEVLPDNIP-------S-IANGEMSTFVKNTIAPQVPPKLRKIFLKGIDEGAHIKVVPTKRMSATLSDKKGV  328 (514)
T ss_pred             CCCeEEEEEEEeCCCCC-------C-cChhhHHHHHHhccccccCHHHHHHHHhhcccccceeecCcccccccccCCCCE
Confidence            88887777666532211       0 012223333322 223344455554432 1111  1111111223334455899


Q ss_pred             EEeccccccCCCCCcchhhhhHHHHHHHHHHHHhhc----cccHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhcCCCCC
Q 014324          312 VLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWG----VEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQGLALPD  387 (426)
Q Consensus       312 ~LvGDAAh~~~P~~G~G~~~ai~Da~~La~~L~~~~----~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~~~~~~  387 (426)
                      +|+|||||+++|+.|||||+|++||..|+++|....    ..+..++|+.|+++|+++++.++..|..+.++|....++.
T Consensus       329 vLiGDAaH~~~P~~GQGmn~AleDA~vLa~lL~~~~~~~~~~~~~~aL~~y~~~Rk~r~~~i~~la~al~~~f~a~~~~~  408 (514)
T PLN02985        329 IVLGDAFNMRHPAIASGMMVLLSDILILRRLLQPLSNLGNANKVSEVIKSFYDIRKPMSATVNTLGNAFSQVLVASTDEA  408 (514)
T ss_pred             EEEecccccCCCCccccHhHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhCCHHH
Confidence            999999999999999999999999999999997642    2356789999999999999999999999999997543221


Q ss_pred             CCCCCCCCCChhhhHHHhhccCCcccCCCccccccc
Q 014324          388 REPFNTKTASPQDCQELQQKTMPFFADLPSLVDSTL  423 (426)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (426)
                      .      -.....|.+.+..+..+++|.-.|+-.+.
T Consensus       409 ~------~~l~~~~f~y~~~g~~~~~~~~~ll~~~~  438 (514)
T PLN02985        409 K------EAMRQGCYDYLCSGGFRTSGMMALLGGMN  438 (514)
T ss_pred             H------HHHHHHHHHHHHcCCccccccHHHHcCCC
Confidence            1      12245789999999999999988886654

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=100.00  E-value=3.6e-41  Score=328.64  Aligned_cols=372  Identities=17%  Similarity=0.166  Sum_probs=232.8

Q ss_pred             ccEEEEcCChHHHHHHHHHHH----cCCcEEEEcccCCCCCC---------CCCcceeccChhHHHHHHHHhcCCchhhh
Q 014324            7 GKAVIVGGSIAGISCAHALLR----AGWDVVVLEKAGGPPTG---------SPTGAGLGLDRPAQRIIQSWLNGRPHLLH   73 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~----~G~~v~v~E~~~~~~~~---------~~~~~~~~l~~~~~~~l~~~~~~~~~~~~   73 (426)
                      +||+||||||+|+++|+.|++    +|++|+|||+++.+...         ...++++.++++++++|+++|+  .+.+.
T Consensus         1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~--~~~l~   78 (437)
T TIGR01989         1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGA--WDHIQ   78 (437)
T ss_pred             CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCc--hhhhh
Confidence            699999999999999999999    89999999996544321         0134689999999999999998  55655


Q ss_pred             ccC-cceeecccccccccccccccccc-CCCcchhccHHHHHHHHHhcCCC----Ce-eEeeeeEEEEEEe-----cCCc
Q 014324           74 LAT-VPLTIDQNQATDNAKVTRTLARD-DNFNFRAAHWADLHGLLYNALPP----EI-FLRGHQYLSFCIS-----EVKT  141 (426)
Q Consensus        74 ~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~r~~l~~~L~~~~~~----~~-i~~~~~v~~~~~~-----~~~~  141 (426)
                      +.. .+......+...+.......... .....+.++|..|++.|.+.+..    ++ +++++++++++..     ++..
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~  158 (437)
T TIGR01989        79 SDRIQPFGRMQVWDGCSLALIRFDRDNGKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSN  158 (437)
T ss_pred             hhcCCceeeEEEecCCCCceEEeecCCCCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCC
Confidence            432 22221111111111000000001 11124568899999999886653    37 9999999999753     2345


Q ss_pred             eEEEEEEeccCCceEEEeecEEEeccCCchhhhhhhcCCCc-ccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCcee
Q 014324          142 TVTVKAKVLQTDEVIEIKGNLLVAADGCLSSIRQSFLSDFK-LRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCL  220 (426)
Q Consensus       142 ~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~vR~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (426)
                      .++|+   +.+|++  ++||+||||||++|.||+++..... ..|..... .+.+..+..             +. ....
T Consensus       159 ~v~v~---~~~g~~--i~a~llVgADG~~S~vR~~~gi~~~g~~y~q~~~-v~~v~~~~~-------------~~-~~~~  218 (437)
T TIGR01989       159 WVHIT---LSDGQV--LYTKLLIGADGSNSNVRKAANIDTTGWNYNQHAV-VATLKLEEA-------------TE-NDVA  218 (437)
T ss_pred             ceEEE---EcCCCE--EEeeEEEEecCCCChhHHHcCCCccceeeccEEE-EEEEEcccC-------------CC-CCeE
Confidence            67776   567765  8999999999999999999854432 22333322 222222210             11 1122


Q ss_pred             eEecCCCceEEEEEecCCeeeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHh----hcccH------HHHHHhh---
Q 014324          221 YFDLASGTHSVFYELLNKRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAE----KVWLP------EFVKVIK---  287 (426)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~------~~~~~~~---  287 (426)
                      +..+.+++.+.++|++++..+++|.........     ....+.+.+.+.+....    ..|..      .+.++.+   
T Consensus       219 ~~~f~~~g~~~~lPl~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~l~~~~~  293 (437)
T TIGR01989       219 WQRFLPTGPIALLPLPDNNSTLVWSTSPEEALR-----LLSLPPEDFVDALNAAFDLGYSDHPYSYLLDYAMEKLNEDIG  293 (437)
T ss_pred             EEEECCCCCEEEeECCCCCEEEEEeCCHHHHHH-----HHcCCHHHHHHHHHHHhccccccccccccccccccccccccc
Confidence            334457778888999888777777654221100     01112222222221111    00000      0000000   


Q ss_pred             -----------------h-cC-cceEeeeeccCCCCccccccEEEeccccccCCCCCcchhhhhHHHHHHHHHHHHhhcc
Q 014324          288 -----------------E-TK-EPFINAMYDCDPLKQIFWSNVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGV  348 (426)
Q Consensus       288 -----------------~-~~-~~~~~~~~~~~p~~~~~~~rv~LvGDAAh~~~P~~G~G~~~ai~Da~~La~~L~~~~~  348 (426)
                                       . .. .....++ ...+.++|..+|++|+|||||.++|+.|||+|+||+||.+|+++|.+...
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~rv~l~GDAAH~~~P~~GqG~n~~l~Da~~La~~L~~~~~  372 (437)
T TIGR01989       294 FRTEGSKSCFQVPPRVIGVVDKSRAAFPL-GLGHADEYVTKRVALVGDAAHRVHPLAGQGVNLGFGDVASLVKALAEAVS  372 (437)
T ss_pred             ccccccccccccCchhheeecccceeEEe-cccchhhccCCCEEEEchhhcCCCCChhhhHHHHHHHHHHHHHHHHHHHh
Confidence                             0 00 0011111 23445678889999999999999999999999999999999999987631


Q ss_pred             --c--cHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhcCCCCCCCCCCCCCCChhhhHHHhhccCCcccCCCcccc
Q 014324          349 --E--GLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQGLALPDREPFNTKTASPQDCQELQQKTMPFFADLPSLVD  420 (426)
Q Consensus       349 --~--~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (426)
                        .  ..+.+|+.|+++|+++++.++..+..+.++|.....              ....+++.++..+..+|++..
T Consensus       373 ~~~~~~~~~~L~~Y~~~R~~~~~~v~~~t~~l~~l~~~~~~--------------~~~~~R~~~l~~~~~~~~~k~  434 (437)
T TIGR01989       373 VGADIGSISSLKPYERERYAKNVVLLGLVDKLHKLYATDFP--------------PVVALRTFGLNLTNYIGPLKN  434 (437)
T ss_pred             cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc--------------HHHHHHHHHHHHhhhCHHhHH
Confidence              1  235799999999999999999999999999865321              344445554445555555543

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PRK08244 hypothetical protein; Provisional

Probab=100.00  E-value=4e-41  Score=333.78  Aligned_cols=338  Identities=17%  Similarity=0.125  Sum_probs=219.6

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ   85 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   85 (426)
                      ++||+||||||+||++|+.|+++|++|+||||.+.+..   .++++.++++++++|+++|+  .+.+.+.+.+.......
T Consensus         2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~---~~ra~~l~~~~~e~l~~lGl--~~~l~~~~~~~~~~~~~   76 (493)
T PRK08244          2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVP---YSKALTLHPRTLEILDMRGL--LERFLEKGRKLPSGHFA   76 (493)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC---CcceeEecHHHHHHHHhcCc--HHHHHhhcccccceEEe
Confidence            37999999999999999999999999999999988643   56889999999999999998  56666554432211111


Q ss_pred             ccccccccccccccCCCc-chhccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecE
Q 014324           86 ATDNAKVTRTLARDDNFN-FRAAHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNL  162 (426)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~-~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~  162 (426)
                      ...+. +.... .....+ ...++|..+++.|.+.+. .++ +++++++++++.+++  .++++++ ..+| ..++++|+
T Consensus        77 ~~~~~-~~~~~-~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~--~v~v~~~-~~~g-~~~i~a~~  150 (493)
T PRK08244         77 GLDTR-LDFSA-LDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGD--GVEVVVR-GPDG-LRTLTSSY  150 (493)
T ss_pred             ccccc-CCccc-CCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCC--eEEEEEE-eCCc-cEEEEeCE
Confidence            11111 10000 011122 245789999999988775 477 999999999986443  5665543 2345 23589999


Q ss_pred             EEeccCCchhhhhhhcCCCcccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEEEecCCeeeE
Q 014324          163 LVAADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELLNKRLNW  242 (426)
Q Consensus       163 vI~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (426)
                      ||+|||.+|.||+++..+.......+..+.+.+....              +... ..+.++.++++++++|++++..++
T Consensus       151 vVgADG~~S~vR~~lgi~~~g~~~~~~~~~~~~~~~~--------------~~~~-~~~~~~~~~g~~~~~P~~~~~~~~  215 (493)
T PRK08244        151 VVGADGAGSIVRKQAGIAFPGTDATFTAMLGDVVLKD--------------PPPS-SVLSLCTREGGVMIVPLSGGIYRV  215 (493)
T ss_pred             EEECCCCChHHHHhcCCCccCCCcceEEEEEEEEecC--------------CCCc-ceeEEEeCCceEEEEECCCCeEEE
Confidence            9999999999999985333211112222222222111              1111 122345677888999998887666


Q ss_pred             EEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcceEeeeec--cCCCCccccccEEEecccccc
Q 014324          243 VWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYD--CDPLKQIFWSNVVLIGDAAHP  320 (426)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~~~~~~~rv~LvGDAAh~  320 (426)
                      .+.........    .....+.+.+.+.+.....   ..    +.... ......+.  ....++|..|||+|+|||||.
T Consensus       216 ~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~---~~----~~~~~-~~~~~~~~~~~~~a~~~~~gRv~L~GDAAH~  283 (493)
T PRK08244        216 LIIDPERPQVP----KDEPVTLEELKTSLIRICG---TD----FGLND-PVWMSRFGNATRQAERYRSGRIFLAGDAAHI  283 (493)
T ss_pred             EEEcCCccccc----CCCCCCHHHHHHHHHHhhC---CC----CCcCC-eeEEEecccceeeHhhhccCcEEEeecceec
Confidence            55432211100    0111123333322221111   00    00000 11111111  234567888999999999999


Q ss_pred             CCCCCcchhhhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhh
Q 014324          321 TTPHGLRSTNMSILDAMVLGKSLEKWG-VEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQ  381 (426)
Q Consensus       321 ~~P~~G~G~~~ai~Da~~La~~L~~~~-~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~  381 (426)
                      ++|++|||+|+||+||.+|+|+|.... +...+.+|++|+++|++++..++..+..+..++.
T Consensus       284 ~~P~~GqG~n~gi~DA~~La~~La~~l~g~~~~~lL~~Ye~eR~~~~~~~~~~~~~~~~~~~  345 (493)
T PRK08244        284 HFPAGGQGLNVGLQDAMNLGWKLAAAIKGWAPDWLLDSYHAERHPVGTALLRNTEVQTKLFD  345 (493)
T ss_pred             cCCccccccccchhhHHHHHHHHHHHHcCCCCchhhhhhHHHHHHHHHHHHHHhHHHHHHhc
Confidence            999999999999999999999998763 3456789999999999999999998887777764

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=100.00  E-value=1.6e-41  Score=326.44  Aligned_cols=363  Identities=16%  Similarity=0.168  Sum_probs=222.7

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCC--CCc-ceeccChhHHHHHHHHhcCCchhhhcc-Cccee
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGS--PTG-AGLGLDRPAQRIIQSWLNGRPHLLHLA-TVPLT   80 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~--~~~-~~~~l~~~~~~~l~~~~~~~~~~~~~~-~~~~~   80 (426)
                      +.+||+||||||+|+++|+.|+++|++|+|||+.+......  ..+ +.+.++|+++++|+++|+  .+.+.+. ..+..
T Consensus         2 ~~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~--~~~~~~~~~~~~~   79 (384)
T PRK08849          2 NKYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGA--WSSIVAMRVCPYK   79 (384)
T ss_pred             CcccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCC--chhhhHhhCCccc
Confidence            35899999999999999999999999999999886321110  111 346899999999999998  4555432 22211


Q ss_pred             eccccccccc--cccccccccCCCcchhccHHHHHHHHHhcCC--CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCce
Q 014324           81 IDQNQATDNA--KVTRTLARDDNFNFRAAHWADLHGLLYNALP--PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEV  155 (426)
Q Consensus        81 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~--~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~  155 (426)
                      ....+.....  .+.......... .+.+.+..|++.|.+.+.  .++ +++++++++++.+++  .++++   +++|++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~-g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~--~~~v~---~~~g~~  153 (384)
T PRK08849         80 RLETWEHPECRTRFHSDELNLDQL-GYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAE--GNRVT---LESGAE  153 (384)
T ss_pred             eEEEEeCCCceEEecccccCCCcc-EEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCC--eEEEE---ECCCCE
Confidence            1000000000  111000001111 244566678888887664  367 999999999986443  56666   567764


Q ss_pred             EEEeecEEEeccCCchhhhhhhcCCCc-ccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEEE
Q 014324          156 IEIKGNLLVAADGCLSSIRQSFLSDFK-LRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYE  234 (426)
Q Consensus       156 ~~~~~d~vI~AdG~~S~vR~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (426)
                        ++||+||+|||.+|++|++++.... ..|..+.   .+++....            .+... ..+.++.+.+...++|
T Consensus       154 --~~~~lvIgADG~~S~vR~~~gi~~~~~~~~~~~---~v~~~~~~------------~~~~~-~~~~~~~~~g~~~~~p  215 (384)
T PRK08849        154 --IEAKWVIGADGANSQVRQLAGIGITAWDYRQHC---MLINVETE------------QPQQD-ITWQQFTPSGPRSFLP  215 (384)
T ss_pred             --EEeeEEEEecCCCchhHHhcCCCceeccCCCeE---EEEEEEcC------------CCCCC-EEEEEeCCCCCEEEeE
Confidence              8999999999999999999853322 2233221   12221110            01111 2233344444555678


Q ss_pred             ecCCeeeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcceEeeeeccCCCCccccccEEEe
Q 014324          235 LLNKRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDPLKQIFWSNVVLI  314 (426)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~rv~Lv  314 (426)
                      ++++..++.|+.......    . ....+.+...+.+.   +.|.+.+..+ . ......+++ ...++++|..+|++|+
T Consensus       216 l~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~l~---~~~~~~~~~~-~-~~~~~~~~l-~~~~~~~~~~grv~Ll  284 (384)
T PRK08849        216 LCGNQGSLVWYDSPKRIK----Q-LSAMNPEQLRSEIL---RHFPAELGEI-K-VLQHGSFPL-TRRHAQQYVKNNCVLL  284 (384)
T ss_pred             cCCCceEEEEECCHHHHH----H-HHcCCHHHHHHHHH---HHhhhhhCcE-E-eccceEeec-cccccchhccCCEEEE
Confidence            877766666654321100    0 00112222222221   2222222211 0 011111221 2345678999999999


Q ss_pred             ccccccCCCCCcchhhhhHHHHHHHHHHHHhhccccHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhcCCCCCCCCCCCC
Q 014324          315 GDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQGLALPDREPFNTK  394 (426)
Q Consensus       315 GDAAh~~~P~~G~G~~~ai~Da~~La~~L~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (426)
                      |||||.|+|+.|||+|+||+||.+|+++|.... .+.+++|+.|+++|+++...++..+..+.++|+...          
T Consensus       285 GDAAH~~~P~~GQG~n~al~Da~~L~~~l~~~~-~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~~~~~~~----------  353 (384)
T PRK08849        285 GDAAHTINPLAGQGVNLGFKDVDVLLAETEKQG-VLNDASFARYERRRRPDNLLMQTGMDLFYKTFSNSL----------  353 (384)
T ss_pred             EcccccCCCCccchHhHHHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCc----------
Confidence            999999999999999999999999999997543 456889999999999999999999998888886531          


Q ss_pred             CCChhhhHHHhhccCCcccCCCccc
Q 014324          395 TASPQDCQELQQKTMPFFADLPSLV  419 (426)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~~  419 (426)
                          .....+++.++.....+|++-
T Consensus       354 ----~~~~~~R~~~l~~~~~~~~~k  374 (384)
T PRK08849        354 ----TPLKFVRNAALKLAENSGPLK  374 (384)
T ss_pred             ----hHHHHHHHHHHHHHhccHHHH
Confidence                133444555555555555544

>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]

Probab=100.00  E-value=3.6e-41  Score=305.27  Aligned_cols=328  Identities=27%  Similarity=0.315  Sum_probs=226.4

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeec-cc
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTID-QN   84 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~   84 (426)
                      +.+|+|||||++||++|++|+|.|++|+|+|++..++.   .|.++++.-++.++|+.+++  .+.+.+.+.+...+ ..
T Consensus         2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~---~g~si~L~~ng~~aLkai~~--~e~i~~~gip~~~~v~~   76 (420)
T KOG2614|consen    2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRG---EGTSINLALNGWRALKAIGL--KEQIREQGIPLGGRVLI   76 (420)
T ss_pred             CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeecccccc---CCcceeehhhHHHHHHHccc--HHHHHHhcCcccceeee
Confidence            35899999999999999999999999999999888874   36778888889999999996  77888888886654 33


Q ss_pred             cccccccccccccccCCC-cchhccHHHHHHHHHhcCCCCeeEeee------eEEEEEEecCCceEEEEEEeccCCceEE
Q 014324           85 QATDNAKVTRTLARDDNF-NFRAAHWADLHGLLYNALPPEIFLRGH------QYLSFCISEVKTTVTVKAKVLQTDEVIE  157 (426)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~-~~~~~~r~~l~~~L~~~~~~~~i~~~~------~v~~~~~~~~~~~v~v~~~~~~~g~~~~  157 (426)
                      +..+|+............ -...+.|..+++.|.++.+.+.|+|+.      ....++.  ......+.   +.+|.+  
T Consensus        77 ~~~sg~~~~~~~~~~~~~~i~r~~~r~ll~~lL~~a~~~~~ikf~~~~~~~~~~~~~~~--~~~~~~v~---l~~g~~--  149 (420)
T KOG2614|consen   77 HGDSGKEVSRILYGEPDEYILRINRRNLLQELLAEALPTGTIKFHSNLSCTSKDVEIET--LGKKLVVH---LSDGTT--  149 (420)
T ss_pred             ecCCCCeeEecccCCchHHHHHHHHHHHHHHHHHhhcCCCeeecccccccccccceeee--ccccccee---cCCCcE--
Confidence            444555455554443332 244566778888888888876677775      3332332  12223333   667776  


Q ss_pred             EeecEEEeccCCchhhhhhhcCCCcccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEEEecC
Q 014324          158 IKGNLLVAADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELLN  237 (426)
Q Consensus       158 ~~~d~vI~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (426)
                      +++|++|||||++|.||++|+... ++|.+++.|++...++ ...++    ....++..+...+.|..+......|..-+
T Consensus       150 ~~~dlligCDGa~S~Vr~~l~~~~-p~~~~~~ayrg~~~~~-~~~~~----~~~vf~~~~~~~~~~~~~~~~~~~y~~~~  223 (420)
T KOG2614|consen  150 VKGDLLIGCDGAYSKVRKWLGFKE-PRYDGSQAYRGLGFIP-NGIPF----GKKVFAIYGNGLHSWPRPGFHLIAYWFLD  223 (420)
T ss_pred             EEeeEEEEcCchHHHHHHHhcccC-CcceeEEEEeeeeecc-CCCCc----ccceecccCCeEEEcccCCceEEEEEeec
Confidence            899999999999999999996544 8999999999988443 33222    22345555666777776666666666666


Q ss_pred             CeeeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcce--EeeeeccCCCCc----cccccE
Q 014324          238 KRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPF--INAMYDCDPLKQ----IFWSNV  311 (426)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~p~~~----~~~~rv  311 (426)
                      +...+.++.+.+++             +.+.....+....|...+.++++......  ..++..+.|.+-    ...+++
T Consensus       224 k~~t~t~~~~~~e~-------------~~l~~~~~~v~~~~~en~~d~i~~~~~e~i~~t~l~~r~p~~~i~~~~s~~~v  290 (420)
T KOG2614|consen  224 KSLTSTDFAPFDEP-------------EKLKKTSLEVVDFFPENFPDIIELTGEESIVRTPLADRPPWPLISVKCSPGNV  290 (420)
T ss_pred             CCcccccccCcCCH-------------HHHhhhHHHHHHHhHHhHHHHHHhcChHHhhhchhhhcCCcCeeeeccCCCeE
Confidence            66666655544332             22333333344456666777666554332  222333333321    122789


Q ss_pred             EEeccccccCCCCCcchhhhhHHHHHHHHHHHHhhccc--------c--------HHHHHHHHHHhhhh
Q 014324          312 VLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVE--------G--------LLSALEEYQTVRLP  364 (426)
Q Consensus       312 ~LvGDAAh~~~P~~G~G~~~ai~Da~~La~~L~~~~~~--------~--------~~~~L~~Y~~~R~~  364 (426)
                      +|+|||||.|.|+.|||+|+||||+.+|+++|.++.++        .        .+.+...|..+|+.
T Consensus       291 vL~GDAaHaM~Pf~GQG~n~a~ED~~VLa~~L~~~~~d~s~~~~~~s~~~e~~~~ie~a~~~Y~~~r~~  359 (420)
T KOG2614|consen  291 VLLGDAAHAMTPFLGQGGNCAFEDCVVLAECLDEAINDVSLAGEEYSRENESHAIIELAMYSYKEERWR  359 (420)
T ss_pred             EEecccccccCCcccccccchHHHHHHHHHHHHHhccchhccccceecccchhHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999988531        1        34566666666633

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=100.00  E-value=8.2e-41  Score=325.64  Aligned_cols=344  Identities=19%  Similarity=0.197  Sum_probs=216.2

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccc
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQN   84 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~   84 (426)
                      .++||+||||||+|+++|+.|+++|++|+||||++.+... ..+.++.++++++++|+++|+  .+.+.....+......
T Consensus        17 ~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~-~~g~~~~l~~~~~~~L~~lGl--~~~l~~~~~~~~~~~~   93 (415)
T PRK07364         17 LTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAA-AKGQAYALSLLSARIFEGIGV--WEKILPQIGKFRQIRL   93 (415)
T ss_pred             cccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccC-CCCcEEEechHHHHHHHHCCh--hhhhHhhcCCccEEEE
Confidence            4689999999999999999999999999999999886532 246788999999999999998  5555554443321111


Q ss_pred             cccccccccccc---cccCCCcchhccHHHHHHHHHhcCCC--Ce-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEE
Q 014324           85 QATDNAKVTRTL---ARDDNFNFRAAHWADLHGLLYNALPP--EI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEI  158 (426)
Q Consensus        85 ~~~~~~~~~~~~---~~~~~~~~~~~~r~~l~~~L~~~~~~--~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~  158 (426)
                      ....+.......   ......++...+| .+.+.|.+.+..  ++ +++++++++++.++  ..+++++.  .+++..++
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~--~~~~v~~~--~~~~~~~i  168 (415)
T PRK07364         94 SDADYPGVVKFQPTDLGTEALGYVGEHQ-VLLEALQEFLQSCPNITWLCPAEVVSVEYQQ--DAATVTLE--IEGKQQTL  168 (415)
T ss_pred             EeCCCCceeeeccccCCCCccEEEEecH-HHHHHHHHHHhcCCCcEEEcCCeeEEEEecC--CeeEEEEc--cCCcceEE
Confidence            111111110101   0111122233344 677778776643  67 89999999998543  35566532  23333458


Q ss_pred             eecEEEeccCCchhhhhhhcCCCcc-cccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEEEecC
Q 014324          159 KGNLLVAADGCLSSIRQSFLSDFKL-RYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELLN  237 (426)
Q Consensus       159 ~~d~vI~AdG~~S~vR~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (426)
                      +||+||+|||.+|.+|+++...... .+.. ..+...+..+.              +... ..+..+.+.++++++|+++
T Consensus       169 ~adlvIgADG~~S~vR~~~~~~~~~~~~~~-~~~~~~~~~~~--------------~~~~-~~~~~~~~~g~~~~~p~~~  232 (415)
T PRK07364        169 QSKLVVAADGARSPIRQAAGIKTKGWKYWQ-SCVTATVKHEA--------------PHND-IAYERFWPSGPFAILPLPG  232 (415)
T ss_pred             eeeEEEEeCCCCchhHHHhCCCceeecCCC-EEEEEEEEccC--------------CCCC-EEEEEecCCCCeEEeECCC
Confidence            9999999999999999998543221 1111 22222332221              1011 1111223456788899988


Q ss_pred             CeeeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcceEeeeeccCCCCccccccEEEeccc
Q 014324          238 KRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDPLKQIFWSNVVLIGDA  317 (426)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~rv~LvGDA  317 (426)
                      +..++.|....+...    . ....+.+.+.+.+.+....|.+.+    ........+++. ..+.++|..+|++|+|||
T Consensus       233 ~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~~~~~rv~LvGDA  302 (415)
T PRK07364        233 NRCQIVWTAPHAQAK----A-LLALPEAEFLAELQQRYGDQLGKL----ELLGDRFLFPVQ-LMQSDRYVQHRLALVGDA  302 (415)
T ss_pred             CCEEEEEECCHHHHH----H-HHCCCHHHHHHHHHHHhhhhhcCc----eecCCCceecch-hhhhhhhcCCcEEEEecc
Confidence            877776654321100    0 001122222222222222221111    111112223322 223567888999999999


Q ss_pred             cccCCCCCcchhhhhHHHHHHHHHHHHhhc--ccc--HHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhc
Q 014324          318 AHPTTPHGLRSTNMSILDAMVLGKSLEKWG--VEG--LLSALEEYQTVRLPVTSKQVLHSRRLGRIKQG  382 (426)
Q Consensus       318 Ah~~~P~~G~G~~~ai~Da~~La~~L~~~~--~~~--~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~  382 (426)
                      ||.++|+.|||+|+||+||..|+++|....  +.+  ..++|+.|+++|++++..++..++.+.+++..
T Consensus       303 Ah~~~P~~GqG~n~al~DA~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~  371 (415)
T PRK07364        303 AHCCHPVGGQGLNLGIRDAAALAQVLQTAHQRGEDIGSLAVLKRYERWRKRENWLILGFTDLLDRLFSN  371 (415)
T ss_pred             cccCCCcccccHhHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            999999999999999999999999998652  122  34899999999999999999999999988864

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=100.00  E-value=1.4e-41  Score=329.71  Aligned_cols=345  Identities=19%  Similarity=0.186  Sum_probs=217.6

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCC-----CCCCcceeccChhHHHHHHHHhcCCchhhhcc-Ccce
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPT-----GSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLA-TVPL   79 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~-----~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~-~~~~   79 (426)
                      ++||+||||||+|+++|+.|+++|++|+|||+.+....     .....++..++++++++|+++|+  .+.+.+. ..+.
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl--~~~l~~~~~~~~   79 (405)
T PRK05714          2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGA--WDGIAARRASPY   79 (405)
T ss_pred             CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCCh--hhhhhHhhCccc
Confidence            37999999999999999999999999999999873210     00122457899999999999998  4555432 2222


Q ss_pred             eecccccccccccccccccc--CCCcchhccHHHHHHHHHhcCCC-Ce-eEeeeeEEEEEEecCCceEEEEEEeccCCce
Q 014324           80 TIDQNQATDNAKVTRTLARD--DNFNFRAAHWADLHGLLYNALPP-EI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEV  155 (426)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~r~~l~~~L~~~~~~-~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~  155 (426)
                      .....+...+..........  .....+.++|..+.+.|.+.+++ ++ +++++++++++.++  ..++++   +.+|++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~v~v~---~~~g~~  154 (405)
T PRK05714         80 SEMQVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSG--DDWLLT---LADGRQ  154 (405)
T ss_pred             eeEEEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcC--CeEEEE---ECCCCE
Confidence            11111111111000000001  11123467888999888887764 77 99999999998543  356665   567754


Q ss_pred             EEEeecEEEeccCCchhhhhhhcCCCcccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEEEe
Q 014324          156 IEIKGNLLVAADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYEL  235 (426)
Q Consensus       156 ~~~~~d~vI~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (426)
                        ++||+||+|||.+|.||++++....  ...+.....+......            .+. ....+..+.+++++.++|+
T Consensus       155 --~~a~~vVgAdG~~S~vR~~lg~~~~--~~~~~~~~~~~~~~~~------------~~~-~~~~~~~~~~~g~~~~~P~  217 (405)
T PRK05714        155 --LRAPLVVAADGANSAVRRLAGCATR--EWDYLHHAIVTSVRCS------------EPH-RATAWQRFTDDGPLAFLPL  217 (405)
T ss_pred             --EEeCEEEEecCCCchhHHhcCCCcc--cccCCceEEEEEEEcC------------CCC-CCEEEEEcCCCCCeEEeeC
Confidence              8999999999999999999854332  2222211111111100            011 1123344567778889998


Q ss_pred             cCCe----eeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcceEeeeeccCCCCccccccE
Q 014324          236 LNKR----LNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDPLKQIFWSNV  311 (426)
Q Consensus       236 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~rv  311 (426)
                      +.+.    .++.|....+...    . ....+.+.   +.+...+.|...+.+++.. .....+++.. .++++|..+|+
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~---~~~~l~~~~~~~~~~~~~~-~~~~~~~l~~-~~~~~~~~~rv  287 (405)
T PRK05714        218 ERDGDEHWCSIVWSTTPEEAE----R-LMALDDDA---FCAALERAFEGRLGEVLSA-DPRLCVPLRQ-RHAKRYVEPGL  287 (405)
T ss_pred             CCCCCCCeEEEEEECCHHHHH----H-HHCCCHHH---HHHHHHHHHHHHhCCceec-CCccEEecce-eehhhhccCCE
Confidence            6432    2233432211100    0 00011111   1121122233333333322 2223344433 35778999999


Q ss_pred             EEeccccccCCCCCcchhhhhHHHHHHHHHHHHhhc--cc--cHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhcCC
Q 014324          312 VLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWG--VE--GLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQGLA  384 (426)
Q Consensus       312 ~LvGDAAh~~~P~~G~G~~~ai~Da~~La~~L~~~~--~~--~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~~~  384 (426)
                      +|+|||||.|+|+.|||+|+||+||.+|+++|....  +.  ..+.+|+.|+++|++++..++..++.+.++|+.-.
T Consensus       288 ~LlGDAAH~~~P~~GQG~n~al~DA~~La~~L~~~~~~g~~~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~~~~~~~  364 (405)
T PRK05714        288 ALIGDAAHTIHPLAGQGVNLGFLDAAVLAEVLLHAAERGERLADVRVLSRFERRRMPHNLALMAAMEGFERLFQADP  364 (405)
T ss_pred             EEEEeccccCCCcccccccHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence            999999999999999999999999999999997642  11  24689999999999999999999999999987643

>PRK09126 hypothetical protein; Provisional

Probab=100.00  E-value=1.4e-40  Score=321.58  Aligned_cols=343  Identities=16%  Similarity=0.136  Sum_probs=220.2

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCC--CCCcceeccChhHHHHHHHHhcCCchhhhccCc-ceeec
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTG--SPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATV-PLTID   82 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~--~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~   82 (426)
                      ++||+||||||+|+++|+.|+++|++|+|+||.+.+...  ...|.++.++++++++|+++|+  .+.+..... +....
T Consensus         3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl--~~~~~~~~~~~~~~~   80 (392)
T PRK09126          3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGA--WDRIPEDEISPLRDA   80 (392)
T ss_pred             cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCC--hhhhccccCCccceE
Confidence            589999999999999999999999999999999875321  1356778899999999999998  555544332 21110


Q ss_pred             cccccccc-ccccccc-ccCCCcchhccHHHHHHHHHhcCC--CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEE
Q 014324           83 QNQATDNA-KVTRTLA-RDDNFNFRAAHWADLHGLLYNALP--PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIE  157 (426)
Q Consensus        83 ~~~~~~~~-~~~~~~~-~~~~~~~~~~~r~~l~~~L~~~~~--~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~  157 (426)
                      ........ .+..... .......+.++|..+.+.|.+.+.  .++ +++++++++++.+++  .+.|+   +++|++  
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~--~~~v~---~~~g~~--  153 (392)
T PRK09126         81 KVLNGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDD--GAQVT---LANGRR--  153 (392)
T ss_pred             EEEcCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCC--eEEEE---EcCCCE--
Confidence            11111111 1100000 001111245788889888888663  477 999999999985433  45555   466764  


Q ss_pred             EeecEEEeccCCchhhhhhhcCCCcccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEEEecC
Q 014324          158 IKGNLLVAADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELLN  237 (426)
Q Consensus       158 ~~~d~vI~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (426)
                      ++||+||+|||.+|.+|+.+.........+...+...+....              + .....+.+++++.+++++|.++
T Consensus       154 ~~a~~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~~--------------~-~~~~~~~~~~~~~~~~~~P~~~  218 (392)
T PRK09126        154 LTARLLVAADSRFSATRRQLGIGADMHDFGRTMLVCRMRHEL--------------P-HHHTAWEWFGYGQTLALLPLNG  218 (392)
T ss_pred             EEeCEEEEeCCCCchhhHhcCCCccccccCCeEEEEEEeccC--------------C-CCCEEEEEecCCCCeEEeECCC
Confidence            899999999999999999985443333333333332222111              1 1123345567777888999988


Q ss_pred             CeeeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcceEeeeeccCCCCccccccEEEeccc
Q 014324          238 KRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDPLKQIFWSNVVLIGDA  317 (426)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~rv~LvGDA  317 (426)
                      +..++.+.++.+...    . ....+.+.+.+.+.   ..|...+..+ ........+++. ..+.++|..+|++|+|||
T Consensus       219 ~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~l~---~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~rv~LvGDA  288 (392)
T PRK09126        219 HLSSLVLTLPPDQIE----A-LLALDPEAFAAEVT---ARFKGRLGAM-RLVSSRHAYPLV-AVYAHRFVAKRFALIGDA  288 (392)
T ss_pred             CCEEEEEECCHHHHH----H-HHcCCHHHHHHHHH---HHHhhhccCe-EEcCCCcEeech-HHHHHHHhhcceEEEehh
Confidence            877766644321100    0 00011111111111   1111111111 111111222322 223467888999999999


Q ss_pred             cccCCCCCcchhhhhHHHHHHHHHHHHhhc----cccHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhc
Q 014324          318 AHPTTPHGLRSTNMSILDAMVLGKSLEKWG----VEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQG  382 (426)
Q Consensus       318 Ah~~~P~~G~G~~~ai~Da~~La~~L~~~~----~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~  382 (426)
                      ||.++|+.|||+|+||+||..|+++|....    ....+++|+.|+++|+++++.++..++.+.+++..
T Consensus       289 Ah~~~P~~GqG~~~ai~da~~la~~L~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~~~~~~~~~~~  357 (392)
T PRK09126        289 AVGMHPVTAHGFNLGLKGQDILARLILAAARRGQDIGAASLLERYERKHRLATRPLYHATNAIAALYTD  357 (392)
T ss_pred             hhcCCCcccchhhhhHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence            999999999999999999999999998753    12357899999999999999999999999888754

>PTZ00367 squalene epoxidase; Provisional

Probab=100.00  E-value=1e-39  Score=322.34  Aligned_cols=374  Identities=17%  Similarity=0.067  Sum_probs=244.8

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccc
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQN   84 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~   84 (426)
                      ..+||+||||||+|+++|+.|+++|++|+|+||......  ....|+.++|++.++|+++|+  .+.+.....+......
T Consensus        32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~~~~~--~r~~G~~L~p~g~~~L~~LGL--~d~l~~i~~~~~~~~v  107 (567)
T PTZ00367         32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDLFSKP--DRIVGELLQPGGVNALKELGM--EECAEGIGMPCFGYVV  107 (567)
T ss_pred             cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccccccc--chhhhhhcCHHHHHHHHHCCC--hhhHhhcCcceeeeEE
Confidence            568999999999999999999999999999999872111  123567899999999999998  5666655555332222


Q ss_pred             cccccccccccccccCCCcchhccHHHHHHHHHhcC----CCCe-eEeeeeEEEEEEecCC-----ceEEEEEEeccCC-
Q 014324           85 QATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNAL----PPEI-FLRGHQYLSFCISEVK-----TTVTVKAKVLQTD-  153 (426)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~----~~~~-i~~~~~v~~~~~~~~~-----~~v~v~~~~~~~g-  153 (426)
                      ...+++...  ...........++|..+.+.|.+.+    ..++ +. ..+++++..++..     .+|+++   ..++ 
T Consensus       108 ~~~~G~~~~--i~~~~~~~g~~~~rg~~~~~Lr~~a~~~~~~~V~v~-~~~v~~l~~~~~~~~~~v~gV~~~---~~~~~  181 (567)
T PTZ00367        108 FDHKGKQVK--LPYGAGASGVSFHFGDFVQNLRSHVFHNCQDNVTML-EGTVNSLLEEGPGFSERAYGVEYT---EAEKY  181 (567)
T ss_pred             EECCCCEEE--ecCCCCCceeEeEHHHHHHHHHHHHHhhcCCCcEEE-EeEEEEeccccCccCCeeEEEEEe---cCCcc
Confidence            222233221  1111222345567888888887755    3466 54 5578877543321     134433   2221 


Q ss_pred             --------------------ceEEEeecEEEeccCCchhhhhhhcCCCcccccceEEEEEEeeCCCCCchHHHhhhhccc
Q 014324          154 --------------------EVIEIKGNLLVAADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVY  213 (426)
Q Consensus       154 --------------------~~~~~~~d~vI~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (426)
                                          +..+++||+||+|||.+|++|+++.... +.+.....|.+.+....            ..
T Consensus       182 ~~~~~~f~~~~~~~~~~~~~~g~~~~AdLvVgADG~~S~vR~~l~~~~-~~~~~~s~~~g~~~~~~------------~l  248 (567)
T PTZ00367        182 DVPENPFREDPPSANPSATTVRKVATAPLVVMCDGGMSKFKSRYQHYT-PASENHSHFVGLVLKNV------------RL  248 (567)
T ss_pred             cccccccccccccccccccccceEEEeCEEEECCCcchHHHHHccCCC-CCcCcceEEEEEEEecc------------cC
Confidence                                1235899999999999999999985332 23334455555432211            01


Q ss_pred             CCCCceeeEecCCCceEEEEEecCCeeeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHh-hhc---
Q 014324          214 PDLGKCLYFDLASGTHSVFYELLNKRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVI-KET---  289 (426)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---  289 (426)
                      |..+ ....+++++++++++|++++..++.+.+..+...      .   ..+..+.+.+...+.+.+.+++.+ +..   
T Consensus       249 p~~~-~~~v~~g~~gpi~~yPl~~~~~r~lv~~~~~~~p------~---~~~~~~~l~~~~~p~l~~~l~~~f~~~l~~~  318 (567)
T PTZ00367        249 PKEQ-HGTVFLGKTGPILSYRLDDNELRVLVDYNKPTLP------S---LEEQSEWLIEDVAPHLPENMRESFIRASKDT  318 (567)
T ss_pred             CCCC-eeEEEEcCCceEEEEEcCCCeEEEEEEecCCcCC------C---hHHHHHHHHHhhcccCcHHHHHHHHHhhccc
Confidence            1111 2234678899999999998877655544332110      0   011112222222333444454433 211   


Q ss_pred             CcceEeeeeccCCCCccccccEEEeccccccCCCCCcchhhhhHHHHHHHHHHHHhhcc---------ccHHHHHH----
Q 014324          290 KEPFINAMYDCDPLKQIFWSNVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGV---------EGLLSALE----  356 (426)
Q Consensus       290 ~~~~~~~~~~~~p~~~~~~~rv~LvGDAAh~~~P~~G~G~~~ai~Da~~La~~L~~~~~---------~~~~~~L~----  356 (426)
                      .....++.. ..|..+|..+|++|+|||||+|+|+.|||+|+||+||..|+++|.....         .+++++|+    
T Consensus       319 ~~l~~~p~~-~~p~~~~~~~gvvLIGDAAH~mhP~~GQGmn~AleDA~~La~~L~~~~~~~~~d~~d~~~v~~aL~~~~~  397 (567)
T PTZ00367        319 KRIRSMPNA-RYPPAFPSIKGYVGIGDHANQRHPLTGGGMTCCFSDCIRLAKSLTGIKSLRSIDQNEMAEIEDAIQAAIL  397 (567)
T ss_pred             CCeEEeeHh-hCCCccCCCCCEEEEEcccCCCCCcccccHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHHHHHHhHH
Confidence            111222222 3344456779999999999999999999999999999999999975320         13467777    


Q ss_pred             HHHHhhhhhHHHHHHHHHHhhhhhhcCCCCCCCCCCCCCCChhhhHHHhhccCCcccCCCcccccccc
Q 014324          357 EYQTVRLPVTSKQVLHSRRLGRIKQGLALPDREPFNTKTASPQDCQELQQKTMPFFADLPSLVDSTLC  424 (426)
Q Consensus       357 ~Y~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (426)
                      .|++.|++++..++..+..+.++|+..            ...+.|.++++.+..+++|.-+|+..+..
T Consensus       398 ~Y~~~Rk~~a~~i~~ls~aL~~lf~~~------------~lr~~~~~y~~~gg~~~~~p~~ll~g~~~  453 (567)
T PTZ00367        398 SYARNRKTHASTINILSWALYSVFSSP------------ALRDACLDYFSLGGECVTGPMSLLSGLDP  453 (567)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHHhChH------------HHHHHHHHHHhcCCccccccHHHHcCCCC
Confidence            999999999999999999999999761            23468999999999999999988876653

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=100.00  E-value=3.7e-41  Score=325.03  Aligned_cols=341  Identities=19%  Similarity=0.146  Sum_probs=224.2

Q ss_pred             CCCCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceee
Q 014324            2 EKKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTI   81 (426)
Q Consensus         2 ~~~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~   81 (426)
                      |+|..+||+||||||+|+++|+.|+++|++|+|||+.+.+.    ..+++.+.+++.++|+++|+  .+.+.....+...
T Consensus         3 ~~~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~----~~r~~~l~~~s~~~l~~lgl--~~~~~~~~~~~~~   76 (388)
T PRK07494          3 MEKEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYA----DLRTTALLGPSIRFLERLGL--WARLAPHAAPLQS   76 (388)
T ss_pred             CCCCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCC----CcchhhCcHHHHHHHHHhCc--hhhhHhhcceeeE
Confidence            55778999999999999999999999999999999998653    23456788899999999987  4555544433322


Q ss_pred             ccccccccccccc---ccc---ccCCCcchhccHHHHHHHHHhcCCC-C-eeEeeeeEEEEEEecCCceEEEEEEeccCC
Q 014324           82 DQNQATDNAKVTR---TLA---RDDNFNFRAAHWADLHGLLYNALPP-E-IFLRGHQYLSFCISEVKTTVTVKAKVLQTD  153 (426)
Q Consensus        82 ~~~~~~~~~~~~~---~~~---~~~~~~~~~~~r~~l~~~L~~~~~~-~-~i~~~~~v~~~~~~~~~~~v~v~~~~~~~g  153 (426)
                      ...+...+..+..   ...   .......+.+++..+.+.|.+.+.. + +.+++++|++++.++  ..++++   +++|
T Consensus        77 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~--~~~~v~---~~~g  151 (388)
T PRK07494         77 MRIVDATGRLIRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNITRFGDEAESVRPRE--DEVTVT---LADG  151 (388)
T ss_pred             EEEEeCCCCCCCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcEEECCeeEEEEEcC--CeEEEE---ECCC
Confidence            1111122221100   000   0111223568899999999987754 3 478899999998543  356665   5566


Q ss_pred             ceEEEeecEEEeccCCchhhhhhhcCCCcccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEE
Q 014324          154 EVIEIKGNLLVAADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFY  233 (426)
Q Consensus       154 ~~~~~~~d~vI~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (426)
                      ++  +++|+||+|||.+|.+|+.+.........+...+...+..+              .+... ....++.+.++..++
T Consensus       152 ~~--~~a~~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~v~~~--------------~~~~~-~~~~~~~~~g~~~~~  214 (388)
T PRK07494        152 TT--LSARLVVGADGRNSPVREAAGIGVRTWSYPQKALVLNFTHS--------------RPHQN-VSTEFHTEGGPFTQV  214 (388)
T ss_pred             CE--EEEeEEEEecCCCchhHHhcCCCceecCCCCEEEEEEEecc--------------CCCCC-EEEEEeCCCCcEEEE
Confidence            54  89999999999999999998544433322333333333221              11111 112333466778889


Q ss_pred             EecCCeeeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhh---cCcceEeeeeccCCCCcccccc
Q 014324          234 ELLNKRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKE---TKEPFINAMYDCDPLKQIFWSN  310 (426)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~p~~~~~~~r  310 (426)
                      |++++..+++|+...+....     ....+.+.+.+.+..       .+..++..   ......+++.. ...++|..+|
T Consensus       215 Pl~~~~~~~v~~~~~~~~~~-----~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~~l~~-~~~~~~~~~r  281 (388)
T PRK07494        215 PLPGRRSSLVWVVRPAEAER-----LLALSDAALSAAIEE-------RMQSMLGKLTLEPGRQAWPLSG-QVAHRFAAGR  281 (388)
T ss_pred             ECCCCcEEEEEECCHHHHHH-----HHcCCHHHHHHHHHH-------HHhhhcCCeEEccCCcEeechH-HHHHhhccCc
Confidence            99888777777654322110     011122222222221       22222221   11223333332 2235688899


Q ss_pred             EEEeccccccCCCCCcchhhhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhcC
Q 014324          311 VVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWG-VEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQGL  383 (426)
Q Consensus       311 v~LvGDAAh~~~P~~G~G~~~ai~Da~~La~~L~~~~-~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~~  383 (426)
                      ++|+|||||.++|+.|||+|+||+||..|+++|.... ......+|+.|+++|++++..++..+..+.++|...
T Consensus       282 v~LiGDAAH~~~P~~GqG~n~~l~Da~~La~~L~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~~  355 (388)
T PRK07494        282 TALVGEAAHVFPPIGAQGLNLGLRDVATLVEIVEDRPEDPGSAAVLAAYDRARRPDILSRTASVDLLNRSLLSD  355 (388)
T ss_pred             eEEEEhhhhcCCchhhcccchhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            9999999999999999999999999999999998753 234678999999999999998888888888877653

>PRK07190 hypothetical protein; Provisional

Probab=100.00  E-value=3.5e-40  Score=323.46  Aligned_cols=334  Identities=18%  Similarity=0.214  Sum_probs=212.7

Q ss_pred             CCCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeec
Q 014324            3 KKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTID   82 (426)
Q Consensus         3 ~~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~   82 (426)
                      +...+||+||||||+||++|+.|+++|++|+|+||.+.+..   .+++..++++++++|+.+|+  .+.+...+.+....
T Consensus         2 ~~~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~---~gra~~l~~~tle~L~~lGl--~~~l~~~~~~~~~~   76 (487)
T PRK07190          2 STQVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLE---VGRADALNARTLQLLELVDL--FDELYPLGKPCNTS   76 (487)
T ss_pred             CCccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccc---cccceEeCHHHHHHHHhcCh--HHHHHhhCccceeE
Confidence            34668999999999999999999999999999999998653   56788899999999999988  55555544332211


Q ss_pred             cccccccccccccc------cccCCCcchhccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCc
Q 014324           83 QNQATDNAKVTRTL------ARDDNFNFRAAHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDE  154 (426)
Q Consensus        83 ~~~~~~~~~~~~~~------~~~~~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~  154 (426)
                      . .+.++..+....      .......+..+.+..+++.|.+.+. .|+ ++++++|++++.+++  .++++   ..+|+
T Consensus        77 ~-~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~--~v~v~---~~~g~  150 (487)
T PRK07190         77 S-VWANGKFISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQA--GCLTT---LSNGE  150 (487)
T ss_pred             E-EecCCceEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCC--eeEEE---ECCCc
Confidence            1 111222111100      0011112345788999999988765 478 999999999986544  45554   34565


Q ss_pred             eEEEeecEEEeccCCchhhhhhhcCCCcccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEEE
Q 014324          155 VIEIKGNLLVAADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYE  234 (426)
Q Consensus       155 ~~~~~~d~vI~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (426)
                        +++|++||+|||.+|.||+++.......... ..| .+++...          ..++|.......+ ..+.+.++.+|
T Consensus       151 --~v~a~~vVgADG~~S~vR~~lgi~f~g~~~~-~~~-~~~d~~~----------~~~~~~~~~~~~~-~~~~g~~~~~p  215 (487)
T PRK07190        151 --RIQSRYVIGADGSRSFVRNHFNVPFEIIRPQ-IIW-AVIDGVI----------DTDFPKVPEIIVF-QAETSDVAWIP  215 (487)
T ss_pred             --EEEeCEEEECCCCCHHHHHHcCCCccccccc-eeE-EEEEEEE----------ccCCCCCcceEEE-EcCCCCEEEEE
Confidence              4899999999999999999985443322111 111 2221110          0011211111112 23445566677


Q ss_pred             ecCCeeeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcceEeeee--ccCCCCccc-cccE
Q 014324          235 LLNKRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMY--DCDPLKQIF-WSNV  311 (426)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~~~~-~~rv  311 (426)
                      .+++...+  +...+..         ..+.+.+.+.+......+.  + . +.   ....+..+  .....++|. .|||
T Consensus       216 ~~~~~~r~--~~~~~~~---------~~t~~~~~~~l~~~~~~~~--~-~-~~---~~~w~s~~~~~~r~a~~~r~~gRV  277 (487)
T PRK07190        216 REGEIDRF--YVRMDTK---------DFTLEQAIAKINHAMQPHR--L-G-FK---EIVWFSQFSVKESVAEHFFIQDRI  277 (487)
T ss_pred             CCCCEEEE--EEEcCCC---------CCCHHHHHHHHHHhcCCCC--C-c-eE---EEEEEEEeeeCcEehhhcCcCCcE
Confidence            76554432  2221110         1122222222221111110  0 0 00   01111111  133356676 6999


Q ss_pred             EEeccccccCCCCCcchhhhhHHHHHHHHHHHHhh-ccccHHHHHHHHHHhhhhhHHHHHHHHHHhhhhh
Q 014324          312 VLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKW-GVEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIK  380 (426)
Q Consensus       312 ~LvGDAAh~~~P~~G~G~~~ai~Da~~La~~L~~~-~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~  380 (426)
                      +|+|||||.++|++|||||++|+||.+|+|+|+.. .+...+..|++|+.+|+++++.++..++.+.++.
T Consensus       278 ~LaGDAAH~h~P~gGQGmN~giqDA~nL~wkLa~v~~g~a~~~lLdtY~~eR~p~a~~vl~~t~~~~~~~  347 (487)
T PRK07190        278 FLAGDACHIHSVNGGQGLNTGLADAFNLIWKLNMVIHHGASPELLQSYEAERKPVAQGVIETSGELVRST  347 (487)
T ss_pred             EEEecccccCCCccccchhhhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            99999999999999999999999999999999876 2345689999999999999999999999887755

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=100.00  E-value=8.2e-41  Score=322.83  Aligned_cols=372  Identities=17%  Similarity=0.196  Sum_probs=234.0

Q ss_pred             CCCCCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCC--CCcceeccChhHHHHHHHHhcCCchhhhcc-Cc
Q 014324            1 MEKKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGS--PTGAGLGLDRPAQRIIQSWLNGRPHLLHLA-TV   77 (426)
Q Consensus         1 m~~~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~--~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~-~~   77 (426)
                      ||.+..+||+||||||+|+++|+.|+++|++|+|+||.+.+....  ...+.+.++|+++++|+++|+  .+.+.+. ..
T Consensus         1 ~~~~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl--~~~~~~~~~~   78 (392)
T PRK08773          1 MSRRSRRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGV--WPAVRAARAQ   78 (392)
T ss_pred             CCCCCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCc--hhhhhHhhCC
Confidence            777888999999999999999999999999999999998654211  112456799999999999998  4555432 22


Q ss_pred             ceeeccccccccc-ccccccc-ccCCCcchhccHHHHHHHHHhcCCC-Ce-eEeeeeEEEEEEecCCceEEEEEEeccCC
Q 014324           78 PLTIDQNQATDNA-KVTRTLA-RDDNFNFRAAHWADLHGLLYNALPP-EI-FLRGHQYLSFCISEVKTTVTVKAKVLQTD  153 (426)
Q Consensus        78 ~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~r~~l~~~L~~~~~~-~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g  153 (426)
                      +......+...+. ....... .......+.++|..|.+.|.+.+++ ++ +++++++++++.++  ..++++   +++|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~--~~v~v~---~~~g  153 (392)
T PRK08773         79 PYRRMRVWDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDA--DRVRLR---LDDG  153 (392)
T ss_pred             cccEEEEEeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecC--CeEEEE---ECCC
Confidence            2211111111111 1110000 0111123567889999999887764 77 99999999998543  356665   5566


Q ss_pred             ceEEEeecEEEeccCCchhhhhhhcCCCc-ccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEE
Q 014324          154 EVIEIKGNLLVAADGCLSSIRQSFLSDFK-LRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVF  232 (426)
Q Consensus       154 ~~~~~~~d~vI~AdG~~S~vR~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (426)
                      ++  +++|+||+|||.+|.+|+.+..... ..+..... ...++.+              .|... ..+..+.+++.+.+
T Consensus       154 ~~--~~a~~vV~AdG~~S~vr~~~g~~~~~~~~~~~~~-~~~v~~~--------------~~~~~-~~~~~~~~~g~~~~  215 (392)
T PRK08773        154 RR--LEAALAIAADGAASTLRELAGLPVSRHDYAQRGV-VAFVDTE--------------HPHQA-TAWQRFLPTGPLAL  215 (392)
T ss_pred             CE--EEeCEEEEecCCCchHHHhhcCCceEEEeccEEE-EEEEEcc--------------CCCCC-EEEEEeCCCCcEEE
Confidence            64  8999999999999999998743332 11222111 1112211              11111 22334456677888


Q ss_pred             EEecCCeeeEEEEEecCCCCcCCCcceeccCH-HHHHHHHHHHhhcccHHHHHHhhhcCcceEeeeeccCCCCccccccE
Q 014324          233 YELLNKRLNWVWYINQPEPIMKGNSVTMRVSN-DMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDPLKQIFWSNV  311 (426)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~rv  311 (426)
                      +|.+++..+++|.++.....    . ....+. +..+++.+ .   +.+.+..+ ........+++. ..++++|..+|+
T Consensus       216 lP~~~~~~~~~w~~~~~~~~----~-~~~~~~~~~~~~l~~-~---~~~~~~~~-~~~~~~~~~~l~-~~~~~~~~~~rv  284 (392)
T PRK08773        216 LPFADGRSSIVWTLPDAEAE----R-VLALDEAAFSRELTQ-A---FAARLGEV-RVASPRTAFPLR-RQLVQQYVSGRV  284 (392)
T ss_pred             EECCCCceEEEEECCHHHHH----H-HHcCCHHHHHHHHHH-H---HhhhhcCe-EecCCccEeech-hhhhhhhcCCcE
Confidence            99988887777765422110    0 000111 11222211 1   11111111 111111222332 345678899999


Q ss_pred             EEeccccccCCCCCcchhhhhHHHHHHHHHHHHhhc----cccHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhcCCCCC
Q 014324          312 VLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWG----VEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQGLALPD  387 (426)
Q Consensus       312 ~LvGDAAh~~~P~~G~G~~~ai~Da~~La~~L~~~~----~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~~~~~~  387 (426)
                      +|+|||||.++|+.|||+|+||+||..|+++|.+..    ....+.+|+.|+++|+++...+......+.++|.+-.   
T Consensus       285 ~LiGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~l~~y~~~R~~~~~~~~~~~~~l~~~f~~~~---  361 (392)
T PRK08773        285 LTLGDAAHVVHPLAGQGVNLGLRDVAALQQLVRQAHARRADWAAPHRLQRWARTRRSDNTVAAYGFDAINRVFSNDE---  361 (392)
T ss_pred             EEEechhhcCCCchhchhhhhHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---
Confidence            999999999999999999999999999999998752    1234689999999999998777776677777776531   


Q ss_pred             CCCCCCCCCChhhhHHHhhccCCcccCCCcccccc
Q 014324          388 REPFNTKTASPQDCQELQQKTMPFFADLPSLVDST  422 (426)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (426)
                                 .....+++.++.++..+|++...+
T Consensus       362 -----------~~~~~~r~~~l~~~~~~~~~k~~~  385 (392)
T PRK08773        362 -----------MHLTLLRGSVLGLAGKLPPLVDAL  385 (392)
T ss_pred             -----------hHHHHHHHHHHHHHhhCHHHHHHH
Confidence                       244455555555666666655443

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=100.00  E-value=3.8e-40  Score=319.84  Aligned_cols=342  Identities=20%  Similarity=0.165  Sum_probs=221.4

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcC--CcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccc
Q 014324            7 GKAVIVGGSIAGISCAHALLRAG--WDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQN   84 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G--~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~   84 (426)
                      +||+||||||+||++|+.|+++|  ++|+|+||.+..... ..++++.++++++++|+++|+  .+.+...+.+......
T Consensus         2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~-~~~~~~~l~~~~~~~l~~lGl--~~~~~~~~~~~~~~~~   78 (403)
T PRK07333          2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWS-RDPRASAIAAAARRMLEALGV--WDEIAPEAQPITDMVI   78 (403)
T ss_pred             CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCC-CCcceEEecHHHHHHHHHCCC--hhhhhhhcCcccEEEE
Confidence            79999999999999999999996  999999999864321 246789999999999999998  5666555443321111


Q ss_pred             ccccc-cccccc-cc----ccCCCc-chhccHHHHHHHHHhcCCC-Ce-eEeeeeEEEEEEecCCceEEEEEEeccCCce
Q 014324           85 QATDN-AKVTRT-LA----RDDNFN-FRAAHWADLHGLLYNALPP-EI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEV  155 (426)
Q Consensus        85 ~~~~~-~~~~~~-~~----~~~~~~-~~~~~r~~l~~~L~~~~~~-~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~  155 (426)
                      ....+ ...... ..    .....+ .+.++|..+++.|.+.+.+ ++ ++++++|++++.++  ..+.++   +++|+.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~v~v~---~~~g~~  153 (403)
T PRK07333         79 TDSRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRD--EGVTVT---LSDGSV  153 (403)
T ss_pred             EeCCCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcC--CEEEEE---ECCCCE
Confidence            11111 110000 00    011122 2468999999999987764 78 99999999998543  356665   566764


Q ss_pred             EEEeecEEEeccCCchhhhhhhcCCCcccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEEEe
Q 014324          156 IEIKGNLLVAADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYEL  235 (426)
Q Consensus       156 ~~~~~d~vI~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (426)
                        +++|+||+|||.+|.+|+.+.........+...+...+....              +. ......++.++++.+++|+
T Consensus       154 --~~ad~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~~--------------~~-~~~~~~~~~~~g~~~~~Pl  216 (403)
T PRK07333        154 --LEARLLVAADGARSKLRELAGIKTVGWDYGQSGIVCTVEHER--------------PH-GGRAEEHFLPAGPFAILPL  216 (403)
T ss_pred             --EEeCEEEEcCCCChHHHHHcCCCcccccCCCEEEEEEEEcCC--------------CC-CCEEEEEeCCCCceEEeEC
Confidence              899999999999999999975433222222222333332221              11 1122334457777888999


Q ss_pred             cCCeeeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcceEeeeeccCCCCccccccEEEec
Q 014324          236 LNKRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDPLKQIFWSNVVLIG  315 (426)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~rv~LvG  315 (426)
                      +++..++.|........    ... ..+.+...+.+...+..|.+.+    ........+.. ...++++|..+|++|||
T Consensus       217 ~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~~~grv~LvG  286 (403)
T PRK07333        217 KGNRSSLVWTERTADAE----RLV-ALDDLVFEAELEQRFGHRLGEL----KVLGKRRAFPL-GLTLARSFVAPRFALVG  286 (403)
T ss_pred             CCCCeEEEEECCHHHHH----HHH-CCCHHHHHHHHHHHhhhhcCce----EeccCccEeec-hhhhhhhccCCCEEEEe
Confidence            88887766543211000    000 0011111111111111111111    00111111222 13356678889999999


Q ss_pred             cccccCCCCCcchhhhhHHHHHHHHHHHHhhcc----ccHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhcC
Q 014324          316 DAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGV----EGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQGL  383 (426)
Q Consensus       316 DAAh~~~P~~G~G~~~ai~Da~~La~~L~~~~~----~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~~  383 (426)
                      ||||.++|+.|||+|+||+||.+|+++|.....    ...+.+|+.|+++|+++.+.++..++.+.++++..
T Consensus       287 DAAH~~~P~~GqG~n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~~~~~~  358 (403)
T PRK07333        287 DAAHGIHPIAGQGLNLGLKDVAALAEVVVEAARLGLDIGSLDVLERYQRWRRFDTVRMGVTTDVLNRLFSND  358 (403)
T ss_pred             chhhcCCCccccchhhhHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCC
Confidence            999999999999999999999999999987631    24689999999999999999999999999888653

>PRK06996 hypothetical protein; Provisional

Probab=100.00  E-value=8.9e-40  Score=315.61  Aligned_cols=341  Identities=14%  Similarity=0.131  Sum_probs=218.3

Q ss_pred             CCCccEEEEcCChHHHHHHHHHHHcC----CcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcce
Q 014324            4 KEKGKAVIVGGSIAGISCAHALLRAG----WDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPL   79 (426)
Q Consensus         4 ~~~~~V~IvGaG~aGl~~A~~L~~~G----~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~   79 (426)
                      .+.+||+||||||+|+++|+.|+++|    ++|+|+|+.+.+... ...+++.++++++++|+++|+.  +.   ...+.
T Consensus         9 ~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~-~~~r~~~l~~~~~~~L~~lg~~--~~---~~~~~   82 (398)
T PRK06996          9 APDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASA-NDPRAIALSHGSRVLLETLGAW--PA---DATPI   82 (398)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCC-CCceEEEecHHHHHHHHhCCCc--hh---cCCcc
Confidence            35689999999999999999999987    469999998754321 2346899999999999999972  22   12221


Q ss_pred             eecccc--ccccccccccccccCCCcchhccHHHHHHHHHhcCCC-Ce-eEeeeeEEEEEEecCCceEEEEEEeccCCc-
Q 014324           80 TIDQNQ--ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPP-EI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDE-  154 (426)
Q Consensus        80 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~-~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~-  154 (426)
                      ......  ...+...............+.++|..|++.|.+.+.+ ++ +++++++++++.  +...|+++   +.+++ 
T Consensus        83 ~~~~~~~~~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~--~~~~v~v~---~~~~~g  157 (398)
T PRK06996         83 EHIHVSQRGHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQ--DADGVTLA---LGTPQG  157 (398)
T ss_pred             cEEEEecCCCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeee--cCCeEEEE---ECCCCc
Confidence            110001  0111110000111111224578999999999998765 67 999999999974  34467766   44332 


Q ss_pred             eEEEeecEEEeccCC-chhhhhhhcCCCcccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEE
Q 014324          155 VIEIKGNLLVAADGC-LSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFY  233 (426)
Q Consensus       155 ~~~~~~d~vI~AdG~-~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (426)
                      ..+++||+||+|||. +|.+|+.++......+.+...+++.++.+..              ..+ ..+..+.+.+++.++
T Consensus       158 ~~~i~a~lvIgADG~~~s~~r~~~~~~~~~~~~~~~~~~~~v~~~~~--------------~~~-~~~~~~~~~G~~~~l  222 (398)
T PRK06996        158 ARTLRARIAVQAEGGLFHDQKADAGDSARRRDYGQTAIVGTVTVSAP--------------RPG-WAWERFTHEGPLALL  222 (398)
T ss_pred             ceEEeeeEEEECCCCCchHHHHHcCCCceeeecCCeEEEEEEEccCC--------------CCC-EEEEEecCCCCeEEe
Confidence            135999999999997 5788888765555555555666666654321              111 112223456667778


Q ss_pred             EecCCe---eeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcceEeeeeccCCCCcccccc
Q 014324          234 ELLNKR---LNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDPLKQIFWSN  310 (426)
Q Consensus       234 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~r  310 (426)
                      |.+++.   .+++|....+...    . ....+.+...+.+...   +...+..+.. ......+.+. ....++|..+|
T Consensus       223 p~~~~~~~~~~~v~~~~~~~~~----~-~~~~~~~~~~~~l~~~---~~~~~~~~~~-~~~~~~~~l~-~~~~~~~~~gr  292 (398)
T PRK06996        223 PLGGPRQADYALVWCCAPDEAA----R-RAALPDDAFLAELGAA---FGTRMGRFTR-IAGRHAFPLG-LNAARTLVNGR  292 (398)
T ss_pred             ECCCCCCCcEEEEEECCHHHHH----H-HHcCCHHHHHHHHHHH---hccccCceEE-ecceEEEeee-cccccceecCC
Confidence            887654   5555554321100    0 0001111222212211   2222211111 1111112222 33456788899


Q ss_pred             EEEeccccccCCCCCcchhhhhHHHHHHHHHHHHhhccccHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhc
Q 014324          311 VVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQG  382 (426)
Q Consensus       311 v~LvGDAAh~~~P~~G~G~~~ai~Da~~La~~L~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~  382 (426)
                      |+|+|||||.++|+.|||+|+||+||.+|+++|...  ...+.+|+.|+++|++++..++..+..+.++|+.
T Consensus       293 v~LiGDAAH~~~P~~GQG~n~ai~Da~~La~~L~~~--~~~~~~L~~Y~~~R~~~~~~~~~~s~~l~~~~~~  362 (398)
T PRK06996        293 IAAVGNAAQTLHPVAGQGLNLGLRDAHTLADALSDH--GATPLALATFAARRALDRRVTIGATDLLPRLFTV  362 (398)
T ss_pred             EEEEEhhhccCCcccchhHHHHHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            999999999999999999999999999999999763  2456789999999999999999999999999875

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=100.00  E-value=1.1e-39  Score=327.12  Aligned_cols=338  Identities=17%  Similarity=0.198  Sum_probs=214.4

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccc
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQN   84 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~   84 (426)
                      ..+||+||||||+||++|+.|+++|++|+||||++.+..   .++++.++++++++|+++|+  .+.+.+.+.+......
T Consensus        22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~---~~ra~~l~~~~~~~l~~lGl--~~~l~~~~~~~~~~~~   96 (547)
T PRK08132         22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLST---GSRAICFAKRSLEIFDRLGC--GERMVDKGVSWNVGKV   96 (547)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCC---CCeEEEEcHHHHHHHHHcCC--cHHHHhhCceeeceeE
Confidence            567999999999999999999999999999999987643   45788999999999999998  5666555543221111


Q ss_pred             ccccccccccccc--ccCC-CcchhccHHHHHHHHHhcCCC--Ce-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEE
Q 014324           85 QATDNAKVTRTLA--RDDN-FNFRAAHWADLHGLLYNALPP--EI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEI  158 (426)
Q Consensus        85 ~~~~~~~~~~~~~--~~~~-~~~~~~~r~~l~~~L~~~~~~--~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~  158 (426)
                      ...++........  .... ..+..+.|..+++.|.+.+.+  ++ +++++++++++.+++  .++++++ ..+|+ .++
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~--~v~v~~~-~~~g~-~~i  172 (547)
T PRK08132         97 FLRDEEVYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDD--GVTLTVE-TPDGP-YTL  172 (547)
T ss_pred             EeCCCeEEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCC--EEEEEEE-CCCCc-EEE
Confidence            1111111110000  1111 123457889999999987653  57 999999999986544  5555543 23443 358


Q ss_pred             eecEEEeccCCchhhhhhhcCCCccc-ccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEe--cCCCceEEEEEe
Q 014324          159 KGNLLVAADGCLSSIRQSFLSDFKLR-YSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFD--LASGTHSVFYEL  235 (426)
Q Consensus       159 ~~d~vI~AdG~~S~vR~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  235 (426)
                      ++|+||+|||.+|.||+.+..+.... +..... ...+..+.            .++... ..++.  ..++..+++++.
T Consensus       173 ~ad~vVgADG~~S~vR~~lg~~~~g~~~~~~~~-~~d~~~~~------------~~~~~~-~~~~~~~~~~~~~~~~~~~  238 (547)
T PRK08132        173 EADWVIACDGARSPLREMLGLEFEGRTFEDRFL-IADVKMKA------------DFPTER-WFWFDPPFHPGQSVLLHRQ  238 (547)
T ss_pred             EeCEEEECCCCCcHHHHHcCCCCCCccccceEE-EEEEEecC------------CCCCee-eEEEeccCCCCcEEEEEeC
Confidence            99999999999999999985433221 211111 11111110            111111 11111  134445555555


Q ss_pred             cCCeeeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCc-ceEe-ee--eccCCCCccccccE
Q 014324          236 LNKRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKE-PFIN-AM--YDCDPLKQIFWSNV  311 (426)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~--~~~~p~~~~~~~rv  311 (426)
                      +++...+  .+........    ......+           .|.+.+.+++..... ...| ..  ....++++|..|||
T Consensus       239 ~~~~~~~--~~~~~~~~~~----~~~~~~~-----------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~gRV  301 (547)
T PRK08132        239 PDNVWRI--DFQLGWDADP----EAEKKPE-----------NVIPRVRALLGEDVPFELEWVSVYTFQCRRMDRFRHGRV  301 (547)
T ss_pred             CCCeEEE--EEecCCCCCc----hhhcCHH-----------HHHHHHHHHcCCCCCeeEEEEEeeeeeeeeecccccccE
Confidence            5543332  2222111000    0000111           122334444432111 1122 11  22456778999999


Q ss_pred             EEeccccccCCCCCcchhhhhHHHHHHHHHHHHhh-ccccHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhc
Q 014324          312 VLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKW-GVEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQG  382 (426)
Q Consensus       312 ~LvGDAAh~~~P~~G~G~~~ai~Da~~La~~L~~~-~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~  382 (426)
                      +|+|||||.|+|++|||+|+||+||.+|+|+|+.. .+...+++|++|+++|+++++.+++.+..+..++..
T Consensus       302 ~L~GDAAH~~~P~~GqG~n~gi~DA~~LawkLa~vl~g~~~~~lL~~Ye~eR~p~~~~~~~~s~~~~~~~~~  373 (547)
T PRK08132        302 LFAGDAAHQVSPFGARGANSGIQDADNLAWKLALVLRGRAPDSLLDSYASEREFAADENIRNSTRSTDFITP  373 (547)
T ss_pred             EEEecccccCCCcccccccchHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCC
Confidence            99999999999999999999999999999999875 334578999999999999999999998888777654

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=100.00  E-value=2.2e-40  Score=319.26  Aligned_cols=340  Identities=19%  Similarity=0.199  Sum_probs=221.8

Q ss_pred             cEEEEcCChHHHHHHHHHHHcC-CcEEEEcccCCCCCCC-CCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324            8 KAVIVGGSIAGISCAHALLRAG-WDVVVLEKAGGPPTGS-PTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ   85 (426)
Q Consensus         8 ~V~IvGaG~aGl~~A~~L~~~G-~~v~v~E~~~~~~~~~-~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   85 (426)
                      ||+||||||+|+++|+.|+++| ++|+|+||.+.+.... ..++++.++|+++++|+++|+  .+.+...+.+.......
T Consensus         1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl--~~~~~~~~~~~~~~~~~   78 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGL--WPKLAPFATPILDIHVS   78 (382)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCC--hhhhHhhcCccceEEEE
Confidence            7999999999999999999999 9999999998875421 114678999999999999998  55555444432211111


Q ss_pred             ccc--cccccccccccCCCcchhccHHHHHHHHHhcCCC--Ce-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEee
Q 014324           86 ATD--NAKVTRTLARDDNFNFRAAHWADLHGLLYNALPP--EI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKG  160 (426)
Q Consensus        86 ~~~--~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~--~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~  160 (426)
                      ...  +...............+.++|..|.+.|.+.+..  ++ +++++++++++.++  ..++++   +++|++  ++|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~--~~~~v~---~~~g~~--~~a  151 (382)
T TIGR01984        79 DQGHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQ--DYVRVT---LDNGQQ--LRA  151 (382)
T ss_pred             cCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcC--CeEEEE---ECCCCE--EEe
Confidence            110  1100000001111223568999999999997764  77 89999999998544  356665   456664  899


Q ss_pred             cEEEeccCCchhhhhhhcCCCcccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEEEecCC-e
Q 014324          161 NLLVAADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELLNK-R  239 (426)
Q Consensus       161 d~vI~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  239 (426)
                      |+||+|||.+|.+|+.+.........+...+...++.+..              ... .....+.+++.+.++|.+++ .
T Consensus       152 d~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~--------------~~~-~~~~~~~~~g~~~~~p~~~~~~  216 (382)
T TIGR01984       152 KLLIAADGANSKVRELLSIPTEEHDYNQTALIANIRHEQP--------------HQG-CAFERFTPHGPLALLPLKDNYR  216 (382)
T ss_pred             eEEEEecCCChHHHHHcCCCCcccccCCEEEEEEEEecCC--------------CCC-EEEEeeCCCCCeEECcCCCCCC
Confidence            9999999999999999864443333334444444433211              111 11123345556777888777 5


Q ss_pred             eeEEEEEecCCCCcCCCcceeccCHH-HHHHHHHHHhhcccHHHHHHhhhcCcceEeeeeccCCCCccccccEEEecccc
Q 014324          240 LNWVWYINQPEPIMKGNSVTMRVSND-MIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDPLKQIFWSNVVLIGDAA  318 (426)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~rv~LvGDAA  318 (426)
                      .++.|..+.+...    . ....+.+ ..+++    .+.|.+.+..+. .......+... ....++|..+|++|+||||
T Consensus       217 ~~~~~~~~~~~~~----~-~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~rv~LvGDAA  285 (382)
T TIGR01984       217 SSLVWCLPSKQAD----T-IANLPDAEFLAEL----QQAFGWRLGKIT-QVGERKTYPLK-LRIAETHVHPRVVLIGNAA  285 (382)
T ss_pred             EEEEEECCHHHHH----H-HHcCCHHHHHHHH----HHHHhhhccCeE-EcCCccEeecc-hhhhhheecCCEEEEeecc
Confidence            5555543221100    0 0011121 12222    222322222211 11122223332 2345678889999999999


Q ss_pred             ccCCCCCcchhhhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhc
Q 014324          319 HPTTPHGLRSTNMSILDAMVLGKSLEKWG-VEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQG  382 (426)
Q Consensus       319 h~~~P~~G~G~~~ai~Da~~La~~L~~~~-~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~  382 (426)
                      |.++|+.|||+|+||+||..|+++|.... ....+++|+.|+++|++++..++..+..+.+++..
T Consensus       286 h~~~P~~GqG~~~al~Da~~La~~L~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~~~~~~~~~~~  350 (382)
T TIGR01984       286 QTLHPIAGQGFNLGLRDVETLAEVLIDARIDLGTYALLQEYLRRRQFDQFITIGLTDGLNRLFSN  350 (382)
T ss_pred             cccCCccccchhhhHHHHHHHHHHHHHhccCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            99999999999999999999999998763 23457899999999999999999999999888754

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK06185 hypothetical protein; Provisional

Probab=100.00  E-value=2.7e-39  Score=314.12  Aligned_cols=349  Identities=20%  Similarity=0.143  Sum_probs=225.9

Q ss_pred             CCCCCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCccee
Q 014324            1 MEKKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLT   80 (426)
Q Consensus         1 m~~~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~   80 (426)
                      ||...++||+||||||+|+++|+.|+++|++|+|+|+.+.+..   ..++..+++.+.++|+++|+  .+.+.+......
T Consensus         1 ~~~~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~---~~r~~~l~~~s~~~L~~lG~--~~~~~~~~~~~~   75 (407)
T PRK06185          1 MAEVETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLR---DFRGDTVHPSTLELMDELGL--LERFLELPHQKV   75 (407)
T ss_pred             CCccccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCc---cccCceeChhHHHHHHHcCC--hhHHhhccccee
Confidence            7777889999999999999999999999999999999876532   33577899999999999998  455544332111


Q ss_pred             eccccccccccccccc--cccCCCc-chhccHHHHHHHHHhcCC--CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCc
Q 014324           81 IDQNQATDNAKVTRTL--ARDDNFN-FRAAHWADLHGLLYNALP--PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDE  154 (426)
Q Consensus        81 ~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~r~~l~~~L~~~~~--~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~  154 (426)
                      .....+..+.......  ......+ ...+.+..+.+.|.+.+.  .++ ++++++++++..+++. .+.+++. ..+|+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~-v~~v~~~-~~~g~  153 (407)
T PRK06185         76 RTLRFEIGGRTVTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEEGGR-VTGVRAR-TPDGP  153 (407)
T ss_pred             eeEEEEECCeEEEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCE-EEEEEEE-cCCCc
Confidence            1111112222111100  0111112 245778889998888664  367 9999999999865432 2223322 34554


Q ss_pred             eEEEeecEEEeccCCchhhhhhhcCCCcc-cccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEE
Q 014324          155 VIEIKGNLLVAADGCLSSIRQSFLSDFKL-RYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFY  233 (426)
Q Consensus       155 ~~~~~~d~vI~AdG~~S~vR~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (426)
                       .+++||+||+|||.+|.+|+.+...... .+.....+ ..++.+.              +. ....+.++.++++++++
T Consensus       154 -~~i~a~~vI~AdG~~S~vr~~~gi~~~~~~~~~~~~~-~~~~~~~--------------~~-~~~~~~~~~~~g~~~ll  216 (407)
T PRK06185        154 -GEIRADLVVGADGRHSRVRALAGLEVREFGAPMDVLW-FRLPREP--------------DD-PESLMGRFGPGQGLIMI  216 (407)
T ss_pred             -EEEEeCEEEECCCCchHHHHHcCCCccccCCCceeEE-EecCCCC--------------CC-CcccceEecCCcEEEEE
Confidence             3589999999999999999998544322 22233222 1111110              00 01123356777888888


Q ss_pred             EecCCeeeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcc---eEeeeeccCCCCcccccc
Q 014324          234 ELLNKRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEP---FINAMYDCDPLKQIFWSN  310 (426)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~p~~~~~~~r  310 (426)
                      |.+ +..+++|..+.....    . .   .....+.+.+.. ..+.|.+.+.+......   ...++. ...+++|..+|
T Consensus       217 P~~-~~~~i~~~~~~~~~~----~-~---~~~~~~~~~~~~-~~~~p~~~~~l~~~~~~~~~~~~~l~-~~~~~~~~~~r  285 (407)
T PRK06185        217 DRG-DYWQCGYVIPKGGYA----A-L---RAAGLEAFRERV-AELAPELADRVAELKSWDDVKLLDVR-VDRLRRWHRPG  285 (407)
T ss_pred             cCC-CeEEEEEEecCCCch----h-h---hhhhHHHHHHHH-HHhCccHHHHHhhcCCccccEEEEEe-ccccccccCCC
Confidence            886 667777766432211    0 0   111122222221 12333343333322211   122221 34566788899


Q ss_pred             EEEeccccccCCCCCcchhhhhHHHHHHHHHHHHhhc--cccHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhcCC
Q 014324          311 VVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWG--VEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQGLA  384 (426)
Q Consensus       311 v~LvGDAAh~~~P~~G~G~~~ai~Da~~La~~L~~~~--~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~~~  384 (426)
                      ++|+|||||.++|+.|||+|+||+||..|++.|....  .+..+..|+.|+++|+++...++..+..+.++|....
T Consensus       286 v~LvGDAAh~~~P~~GqG~nlgl~Da~~La~~l~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~~~  361 (407)
T PRK06185        286 LLCIGDAAHAMSPVGGVGINLAIQDAVAAANILAEPLRRGRVSDRDLAAVQRRREFPTRVTQALQRRIQRRLLAPA  361 (407)
T ss_pred             eEEEeccccccCcccccchhHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcccc
Confidence            9999999999999999999999999999999998752  2234589999999999999999999999999886643

>PRK06834 hypothetical protein; Provisional

Probab=100.00  E-value=1.1e-39  Score=320.35  Aligned_cols=334  Identities=18%  Similarity=0.147  Sum_probs=210.4

Q ss_pred             CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecc
Q 014324            4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQ   83 (426)
Q Consensus         4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~   83 (426)
                      |.++||+||||||+|+++|+.|+++|++|+|+||.+.+...  ..++..++++++++|+++|+  .+.+.+.+...... 
T Consensus         1 ~~~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~--~~Ra~~l~~~s~~~L~~lGl--~~~l~~~~~~~~~~-   75 (488)
T PRK06834          1 MTEHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELV--GSRAGGLHARTLEVLDQRGI--ADRFLAQGQVAQVT-   75 (488)
T ss_pred             CCcceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCC--CcceeeECHHHHHHHHHcCc--HHHHHhcCCccccc-
Confidence            35589999999999999999999999999999999875421  22567799999999999998  56665543332110 


Q ss_pred             ccccccccccccccccCCCcchhccHHHHHHHHHhcCCC-Ce-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeec
Q 014324           84 NQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPP-EI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGN  161 (426)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~-~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d  161 (426)
                       .+ ....+..............+.+..+++.|.+.+.+ ++ +++++++++++.++  ..++++   +.+|+  ++++|
T Consensus        76 -~~-~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~--~~v~v~---~~~g~--~i~a~  146 (488)
T PRK06834         76 -GF-AATRLDISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDD--TGVDVE---LSDGR--TLRAQ  146 (488)
T ss_pred             -ee-eeEecccccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcC--CeEEEE---ECCCC--EEEeC
Confidence             00 00001000000111123457788999999987764 77 99999999998644  356665   45665  48999


Q ss_pred             EEEeccCCchhhhhhhcCCCcccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEEEec-CCee
Q 014324          162 LLVAADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELL-NKRL  240 (426)
Q Consensus       162 ~vI~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  240 (426)
                      +||+|||.+|.+|+++.......  .+.....+.++.....           +..+    ....+.+...+.|.+ ++..
T Consensus       147 ~vVgADG~~S~vR~~lgi~~~g~--~~~~~~~~~dv~~~~~-----------~~~~----~~~~~~g~~~~~~~~~~~~~  209 (488)
T PRK06834        147 YLVGCDGGRSLVRKAAGIDFPGW--DPTTSYLIAEVEMTEE-----------PEWG----VHRDALGIHAFGRLEDEGPV  209 (488)
T ss_pred             EEEEecCCCCCcHhhcCCCCCCC--CcceEEEEEEEEecCC-----------CCcc----eeeCCCceEEEeccCCCCeE
Confidence            99999999999999985333211  1111112222211000           1000    122333444455554 4455


Q ss_pred             eEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcceEeeeeccCCCCccccccEEEecccccc
Q 014324          241 NWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDPLKQIFWSNVVLIGDAAHP  320 (426)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~rv~LvGDAAh~  320 (426)
                      ++.+....+  ..     ....+.+.+.+.+...   +...+..   ................++|..|||+|+|||||.
T Consensus       210 ~~~~~~~~~--~~-----~~~~~~~~~~~~l~~~---~g~~~~~---~~~~~~~~~~~~~r~a~~~~~gRV~LaGDAAH~  276 (488)
T PRK06834        210 RVMVTEKQV--GA-----TGEPTLDDLREALIAV---YGTDYGI---HSPTWISRFTDMARQAASYRDGRVLLAGDAAHV  276 (488)
T ss_pred             EEEEecCCC--CC-----CCCCCHHHHHHHHHHh---hCCCCcc---ccceeEEeccccceecccccCCcEEEEeecccc
Confidence            555443211  10     1112333333322221   1111110   000111101111344678889999999999999


Q ss_pred             CCCCCcchhhhhHHHHHHHHHHHHhh-ccccHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhh
Q 014324          321 TTPHGLRSTNMSILDAMVLGKSLEKW-GVEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQ  381 (426)
Q Consensus       321 ~~P~~G~G~~~ai~Da~~La~~L~~~-~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~  381 (426)
                      |+|++|||||+||+||.+|+|+|+.. .+...+.+|++|+++|++++..++..+..+..++.
T Consensus       277 ~~P~gGQG~N~gi~DA~nLawkLa~vl~g~~~~~lLd~Ye~eRrp~~~~~~~~t~~~~~~~~  338 (488)
T PRK06834        277 HSPVGGQGLNTGVQDAVNLGWKLAQVVKGTSPESLLDTYHAERHPVAARVLRNTMAQVALLR  338 (488)
T ss_pred             CCccccccccccHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            99999999999999999999999886 33467899999999999999999988877766553

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=100.00  E-value=1.1e-39  Score=314.88  Aligned_cols=341  Identities=18%  Similarity=0.162  Sum_probs=221.6

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCC--CCcceeccChhHHHHHHHHhcCCchhhhc-cCcceeeccc
Q 014324            8 KAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGS--PTGAGLGLDRPAQRIIQSWLNGRPHLLHL-ATVPLTIDQN   84 (426)
Q Consensus         8 ~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~--~~~~~~~l~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~   84 (426)
                      ||+||||||+|+++|+.|+++|++|+||||++.++...  ..++++.+++++.++|+++|+  .+.+.+ ...+......
T Consensus         1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl--~~~~~~~~~~~~~~~~~   78 (385)
T TIGR01988         1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGV--WDKIEPDRAQPIRDIHV   78 (385)
T ss_pred             CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCc--hhhhhhhcCCCceEEEE
Confidence            79999999999999999999999999999999875321  135778999999999999998  556555 4433222111


Q ss_pred             cccccc-ccccccc-ccCCCcchhccHHHHHHHHHhcCCC-C-e-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEe
Q 014324           85 QATDNA-KVTRTLA-RDDNFNFRAAHWADLHGLLYNALPP-E-I-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIK  159 (426)
Q Consensus        85 ~~~~~~-~~~~~~~-~~~~~~~~~~~r~~l~~~L~~~~~~-~-~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~  159 (426)
                      +...+. .+..... .......+.++|..+.+.|.+.+.+ + + ++++++|++++.++  ..++++   +++|+.  ++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~--~~~~v~---~~~g~~--~~  151 (385)
T TIGR01988        79 SDGGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHS--DHVELT---LDDGQQ--LR  151 (385)
T ss_pred             EeCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecC--CeeEEE---ECCCCE--EE
Confidence            111111 1111000 0111223568899999999987754 5 6 99999999998543  356665   567765  89


Q ss_pred             ecEEEeccCCchhhhhhhcCCCcccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEEEecCCe
Q 014324          160 GNLLVAADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELLNKR  239 (426)
Q Consensus       160 ~d~vI~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (426)
                      +|+||+|||.+|.+|+++.........+...+...+..+..              . ....+.++.++++++++|++++.
T Consensus       152 ~~~vi~adG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~--------------~-~~~~~~~~~~~g~~~~~p~~~~~  216 (385)
T TIGR01988       152 ARLLVGADGANSKVRQLAGIPTTGWDYGQSAVVANVKHERP--------------H-QGTAWERFTPTGPLALLPLPDNR  216 (385)
T ss_pred             eeEEEEeCCCCCHHHHHcCCCccccccCCeEEEEEEEecCC--------------C-CCEEEEEecCCCCEEEeECCCCC
Confidence            99999999999999999854332221122233333332211              0 11112233456678889998887


Q ss_pred             eeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcceEeeeeccCCCCccccccEEEeccccc
Q 014324          240 LNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDPLKQIFWSNVVLIGDAAH  319 (426)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~rv~LvGDAAh  319 (426)
                      .++.|.........     ....+.+.+.+.+.+.   +.+...++ ........+++. ..+.++|..+|++|+|||||
T Consensus       217 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~v~LiGDAah  286 (385)
T TIGR01988       217 SSLVWTLPPEEAER-----LLALSDEEFLAELQRA---FGSRLGAI-TLVGERHAFPLS-LTHAKRYVAPRLALIGDAAH  286 (385)
T ss_pred             eEEEEECCHHHHHH-----HHcCCHHHHHHHHHHH---HhhhcCce-EeccCcceeech-hhhhhheecCceEEEecccc
Confidence            77776653211000     0001122122212211   11111111 111112222222 23456788899999999999


Q ss_pred             cCCCCCcchhhhhHHHHHHHHHHHHhhcc----ccHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhc
Q 014324          320 PTTPHGLRSTNMSILDAMVLGKSLEKWGV----EGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQG  382 (426)
Q Consensus       320 ~~~P~~G~G~~~ai~Da~~La~~L~~~~~----~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~  382 (426)
                      .|+|+.|||+|+||+||..|+++|.....    ...+.+|+.|+++|+++++.++..++.+.+++..
T Consensus       287 ~~~P~~G~G~~~Ai~da~~La~~L~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~~~~~~~~~~~  353 (385)
T TIGR01988       287 TIHPLAGQGLNLGLRDVAALAEVLEDARRRGEDIGSPRVLQRYERRRRFDNAAMLGATDGLNRLFSN  353 (385)
T ss_pred             cCCccccchhhhhHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            99999999999999999999999987521    1347999999999999999999999999988764

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=100.00  E-value=1.5e-39  Score=314.21  Aligned_cols=343  Identities=17%  Similarity=0.156  Sum_probs=215.5

Q ss_pred             CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCC---CCcceeccChhHHHHHHHHhcCCchhhhcc-Ccce
Q 014324            4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGS---PTGAGLGLDRPAQRIIQSWLNGRPHLLHLA-TVPL   79 (426)
Q Consensus         4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~---~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~-~~~~   79 (426)
                      .+.+||+||||||+|+++|+.|+++|++|+|||+.+.+....   ...+...+++++.++|+++|+  .+.+... ..+.
T Consensus         3 ~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl--~~~~~~~~~~~~   80 (391)
T PRK08020          3 NQPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGV--WDAVQAMRSHPY   80 (391)
T ss_pred             cccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCC--hhhhhhhhCccc
Confidence            366999999999999999999999999999999986533211   112456899999999999998  4444432 1221


Q ss_pred             e-eccccccccccccccccccCCCcchhccHHHHHHHHHhcCC--CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCce
Q 014324           80 T-IDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALP--PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEV  155 (426)
Q Consensus        80 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~--~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~  155 (426)
                      . .....+..+...............+.++|..+++.|.+.+.  .++ +++++++++++.+++  .+.++   +.+|++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~--~~~v~---~~~g~~  155 (391)
T PRK08020         81 RRLETWEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDD--GWELT---LADGEE  155 (391)
T ss_pred             ceEEEEeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCC--eEEEE---ECCCCE
Confidence            1 11111111111000000011112346889999999988764  377 889999999985433  45555   456654


Q ss_pred             EEEeecEEEeccCCchhhhhhhcCCC-cccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEEE
Q 014324          156 IEIKGNLLVAADGCLSSIRQSFLSDF-KLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYE  234 (426)
Q Consensus       156 ~~~~~d~vI~AdG~~S~vR~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (426)
                        ++||+||+|||.+|++|+.+..+. ...|.... +...+..+.              +... ..+..+.+.+...++|
T Consensus       156 --~~a~~vI~AdG~~S~vR~~~~~~~~~~~y~~~~-~~~~~~~~~--------------~~~~-~~~~~~~~~g~~~~~p  217 (391)
T PRK08020        156 --IQAKLVIGADGANSQVRQMAGIGVHGWQYRQSC-MLISVKCEN--------------PPGD-STWQQFTPSGPRAFLP  217 (391)
T ss_pred             --EEeCEEEEeCCCCchhHHHcCCCccccCCCceE-EEEEEEecC--------------CCCC-EEEEEEcCCCCEEEeE
Confidence              899999999999999999985433 23344332 222232221              1111 1222333444556678


Q ss_pred             ecCCeeeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcceEeeeeccCCCCccccccEEEe
Q 014324          235 LLNKRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDPLKQIFWSNVVLI  314 (426)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~rv~Lv  314 (426)
                      +.++..+++|+.......    . ....+.+.   +.+.....|.+.+.++...  ....+++. ..+.++|..+|++|+
T Consensus       218 ~~~~~~~~v~~~~~~~~~----~-~~~~~~~~---~~~~l~~~~~~~~~~~~~~--~~~~~pl~-~~~~~~~~~~rv~Lv  286 (391)
T PRK08020        218 LFDNWASLVWYDSPARIR----Q-LQAMSMAQ---LQQEIAAHFPARLGAVTPV--AAGAFPLT-RRHALQYVQPGLALV  286 (391)
T ss_pred             CCCCcEEEEEECCHHHHH----H-HHCCCHHH---HHHHHHHHhhhhccceEec--cccEeecc-eeehhhhccCcEEEE
Confidence            877766776654321100    0 00112222   2222222333333222111  11122222 234677889999999


Q ss_pred             ccccccCCCCCcchhhhhHHHHHHHHHHHHhhc--cc--cHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhc
Q 014324          315 GDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWG--VE--GLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQG  382 (426)
Q Consensus       315 GDAAh~~~P~~G~G~~~ai~Da~~La~~L~~~~--~~--~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~  382 (426)
                      |||||.++|+.|||+|+||+||..|+++|.+..  ..  ..+.+|+.|+++|+++...++..+..+.++|+.
T Consensus       287 GDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~l~~~~~~  358 (391)
T PRK08020        287 GDAAHTINPLAGQGVNLGYRDVDALLDVLVNARSYGEAWASEAVLKRYQRRRMADNLLMQSGMDLFYAGFSN  358 (391)
T ss_pred             echhhccCCcccchhHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            999999999999999999999999999998752  11  356899999999999998888888888888765

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=100.00  E-value=1.1e-38  Score=308.94  Aligned_cols=344  Identities=19%  Similarity=0.188  Sum_probs=218.5

Q ss_pred             CCCccEEEEcCChHHHHHHHHHHHc---CCcEEEEcccCCCCCC--CCCcceeccChhHHHHHHHHhcCCchhhhccCcc
Q 014324            4 KEKGKAVIVGGSIAGISCAHALLRA---GWDVVVLEKAGGPPTG--SPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVP   78 (426)
Q Consensus         4 ~~~~~V~IvGaG~aGl~~A~~L~~~---G~~v~v~E~~~~~~~~--~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~   78 (426)
                      |+++||+||||||+|+++|+.|+++   |++|+||||.......  ...++++.+.++++++|+++|+  .+.+.+.+.+
T Consensus         1 m~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl--~~~~~~~~~~   78 (395)
T PRK05732          1 MSRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGV--WQALADCATP   78 (395)
T ss_pred             CCcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCC--hhhhHhhcCC
Confidence            4568999999999999999999998   9999999996432110  1134688999999999999998  5666554443


Q ss_pred             eeecccccccccccc-ccccccC--CCcchhccHHHHHHHHHhcCC--CCe-eEeeeeEEEEEEecCCceEEEEEEeccC
Q 014324           79 LTIDQNQATDNAKVT-RTLARDD--NFNFRAAHWADLHGLLYNALP--PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQT  152 (426)
Q Consensus        79 ~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~r~~l~~~L~~~~~--~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~  152 (426)
                      ...... ...+.... .......  ....+.++|..+.+.|.+.+.  .++ ++++++++++..+  +..++++   +++
T Consensus        79 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~--~~~~~v~---~~~  152 (395)
T PRK05732         79 ITHIHV-SDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERT--QGSVRVT---LDD  152 (395)
T ss_pred             ccEEEE-ecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEc--CCeEEEE---ECC
Confidence            221111 11111000 0000011  111245788899999888664  367 8999999999753  3456665   456


Q ss_pred             CceEEEeecEEEeccCCchhhhhhhcCCCcccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEE
Q 014324          153 DEVIEIKGNLLVAADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVF  232 (426)
Q Consensus       153 g~~~~~~~d~vI~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (426)
                      |..  +++|+||+|||.+|.+|+.+..+....+.+...+...+.....              ..+. .+..+.+++++.+
T Consensus       153 g~~--~~a~~vI~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~-~~~~~~~~g~~~~  215 (395)
T PRK05732        153 GET--LTGRLLVAADGSHSALREALGIDWQQHPYEQVAVIANVTTSEA--------------HQGR-AFERFTEHGPLAL  215 (395)
T ss_pred             CCE--EEeCEEEEecCCChhhHHhhCCCccceecCCEEEEEEEEecCC--------------CCCE-EEEeecCCCCEEE
Confidence            654  8999999999999999999865444443344444444432211              0111 1122345556778


Q ss_pred             EEecCCeeeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcceEeeeeccCCCCccccccEE
Q 014324          233 YELLNKRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDPLKQIFWSNVV  312 (426)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~rv~  312 (426)
                      +|.+++...+.|+++.+...    ........+..+.+...    +...+..+.. ......+.+. ....++|..+|++
T Consensus       216 ~p~~~g~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~----~~~~~~~~~~-~~~~~~~~l~-~~~~~~~~~grv~  285 (395)
T PRK05732        216 LPMSDGRCSLVWCHPLEDAE----EVLSWSDAQFLAELQQA----FGWRLGRITH-AGKRSAYPLA-LVTAAQQISHRLA  285 (395)
T ss_pred             eECCCCCeEEEEECCHHHHH----HHHcCCHHHHHHHHHHH----HHhhhcceee-cCCcceeccc-ccchhhhccCcEE
Confidence            89888887777765432110    00000112222222221    1111111111 1111112221 2234568889999


Q ss_pred             EeccccccCCCCCcchhhhhHHHHHHHHHHHHhhc---c-ccHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhc
Q 014324          313 LIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWG---V-EGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQG  382 (426)
Q Consensus       313 LvGDAAh~~~P~~G~G~~~ai~Da~~La~~L~~~~---~-~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~  382 (426)
                      |+|||||.++|+.|||+|+||+||.+|+++|....   . ...+++|+.|+++|++++..++..++.+.+++..
T Consensus       286 LvGDAAh~~~P~~GqG~~~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~~~~~~~~~~~~~~~~~~~~  359 (395)
T PRK05732        286 LVGNAAQTLHPIAGQGFNLGLRDVMSLAETLTQALARGEDIGDYAVLQRYQQRRQQDREATIGFTDGLVRLFAN  359 (395)
T ss_pred             EEeecccccCCccccccchHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999999996542   1 1245899999999999999999999999988854

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=100.00  E-value=3.1e-38  Score=304.91  Aligned_cols=341  Identities=18%  Similarity=0.182  Sum_probs=216.5

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCC--CCcceeccChhHHHHHHHHhcCCchhhhccC-cceeec
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGS--PTGAGLGLDRPAQRIIQSWLNGRPHLLHLAT-VPLTID   82 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~--~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~   82 (426)
                      ++||+||||||+|+++|+.|++.|++|+|+||.+.+....  ...+.+.++++++++|+++|+  .+.+.... .+....
T Consensus         5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~--~~~~~~~~~~~~~~~   82 (388)
T PRK07608          5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGV--WQALDAARLAPVYDM   82 (388)
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCc--hhhhhhhcCCcceEE
Confidence            5799999999999999999999999999999998865311  122458899999999999987  44443222 121111


Q ss_pred             ccccccccccccc-ccccCCCcchhccHHHHHHHHHhcCCC-C-e-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEE
Q 014324           83 QNQATDNAKVTRT-LARDDNFNFRAAHWADLHGLLYNALPP-E-I-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEI  158 (426)
Q Consensus        83 ~~~~~~~~~~~~~-~~~~~~~~~~~~~r~~l~~~L~~~~~~-~-~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~  158 (426)
                      .........+... .........+.++|..+++.|.+.+++ + + ++ ++++++++..+  ..+.++   +.+|++  +
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~--~~~~v~---~~~g~~--~  154 (388)
T PRK07608         83 RVFGDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDP--DAATLT---LADGQV--L  154 (388)
T ss_pred             EEEECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecC--CeEEEE---ECCCCE--E
Confidence            1111111111100 001111223568899999999887754 5 6 66 99999987543  356665   456654  8


Q ss_pred             eecEEEeccCCchhhhhhhcCCCccc-ccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEEEecC
Q 014324          159 KGNLLVAADGCLSSIRQSFLSDFKLR-YSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELLN  237 (426)
Q Consensus       159 ~~d~vI~AdG~~S~vR~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (426)
                      +||+||+|||.+|.+|+.+....... +.. ..+...+..+.              +. ....+.++.++++++++|+++
T Consensus       155 ~a~~vI~adG~~S~vr~~~~~~~~~~~~~~-~~~~~~~~~~~--------------~~-~~~~~~~~~~~~~~~~~p~~~  218 (388)
T PRK07608        155 RADLVVGADGAHSWVRSQAGIKAERRPYRQ-TGVVANFKAER--------------PH-RGTAYQWFRDDGILALLPLPD  218 (388)
T ss_pred             EeeEEEEeCCCCchHHHhcCCCccccccCC-EEEEEEEEecC--------------CC-CCEEEEEecCCCCEEEeECCC
Confidence            99999999999999999985433222 211 11222222111              11 113345567888889999998


Q ss_pred             CeeeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcceEeeeeccCCCCccccccEEEeccc
Q 014324          238 KRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDPLKQIFWSNVVLIGDA  317 (426)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~rv~LvGDA  317 (426)
                      +...+.|....+...    . ....+.+.+.+.+.....   ..+.. +........+++. ..+++.|..+|++|+|||
T Consensus       219 ~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~rv~liGDA  288 (388)
T PRK07608        219 GHVSMVWSARTAHAD----E-LLALSPEALAARVERASG---GRLGR-LECVTPAAGFPLR-LQRVDRLVAPRVALVGDA  288 (388)
T ss_pred             CCeEEEEECCHHHHH----H-HHCCCHHHHHHHHHHHHH---HhcCC-ceecCCcceeecc-hhhhhhhhcCceEEEecc
Confidence            877665544221100    0 000122222222221111   01111 1111111122221 234567888999999999


Q ss_pred             cccCCCCCcchhhhhHHHHHHHHHHHHhhc---cccHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhc
Q 014324          318 AHPTTPHGLRSTNMSILDAMVLGKSLEKWG---VEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQG  382 (426)
Q Consensus       318 Ah~~~P~~G~G~~~ai~Da~~La~~L~~~~---~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~  382 (426)
                      ||.|+|+.|||+|+||+||.+|+++|....   .....++|+.|+++|+++++.++..++.+.+++..
T Consensus       289 Ah~~~P~~GqG~n~ai~da~~La~~L~~~~~~~~~~~~~~l~~Ye~~R~~~~~~~~~~~~~~~~~~~~  356 (388)
T PRK07608        289 AHLIHPLAGQGMNLGLRDVAALADVLAGREPFRDLGDLRLLRRYERARREDILALQVATDGLQRLFAL  356 (388)
T ss_pred             ccccCCccccccchhHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            999999999999999999999999998653   12345899999999999999999999999988864

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=100.00  E-value=2e-33  Score=289.81  Aligned_cols=326  Identities=17%  Similarity=0.174  Sum_probs=205.5

Q ss_pred             ccEEEEcCChHHHHHHHHHHHc--CCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccc
Q 014324            7 GKAVIVGGSIAGISCAHALLRA--GWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQN   84 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~--G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~   84 (426)
                      ++|+|||||||||++|+.|+++  |++|+|+||++...   ..|+|+.+++++++.|..++....+.+......... ..
T Consensus         1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~---~~G~Gi~ls~~~l~~L~~~~~~~~~~~~~~~~~~~~-~~   76 (765)
T PRK08255          1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYD---TFGWGVVFSDATLGNLRAADPVSAAAIGDAFNHWDD-ID   76 (765)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCc---ccCcceEccHHHHHHHHhcCHHHHHHHHHhcccCCc-eE
Confidence            4799999999999999999998  89999999998754   367899999999999987653112222221111000 00


Q ss_pred             cccccccccccccccCCCcchhccHHHHHHHHHhcCCC-Ce-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecE
Q 014324           85 QATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPP-EI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNL  162 (426)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~-~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~  162 (426)
                      ....+...     ...+.++..++|.+|.+.|.+.+.+ |+ ++++++++++..             .      ..++|+
T Consensus        77 ~~~~g~~~-----~~~g~~~~~i~R~~L~~~L~e~a~~~GV~i~~g~~v~~i~~-------------~------~~~~D~  132 (765)
T PRK08255         77 VHFKGRRI-----RSGGHGFAGIGRKRLLNILQARCEELGVKLVFETEVPDDQA-------------L------AADADL  132 (765)
T ss_pred             EEECCEEE-----EECCeeEecCCHHHHHHHHHHHHHHcCCEEEeCCccCchhh-------------h------hcCCCE
Confidence            01112111     1123345678999999999998765 78 999988765431             0      147999


Q ss_pred             EEeccCCchhhhhhhcCCCcc----cccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCce--EEEEEec
Q 014324          163 LVAADGCLSSIRQSFLSDFKL----RYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTH--SVFYELL  236 (426)
Q Consensus       163 vI~AdG~~S~vR~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  236 (426)
                      ||+|||.+|.+|+++.....+    .+..+ .|.+.....  .      .+       .  ..+...+.++  ...||+.
T Consensus       133 VVgADG~~S~vR~~~~~~~~~~~~~~~~~~-~w~g~~~~~--~------~~-------~--~~~~~~~~g~~~~~~y~~~  194 (765)
T PRK08255        133 VIASDGLNSRIRTRYADTFQPDIDTRRCRF-VWLGTHKVF--D------AF-------T--FAFEETEHGWFQAHAYRFD  194 (765)
T ss_pred             EEEcCCCCHHHHHHHHhhcCCceecCCCce-EEecCCCcc--c------ce-------e--EEEEecCCceEEEEEeeeC
Confidence            999999999999986422222    22232 243322110  0      00       0  0000011111  2346666


Q ss_pred             CCeeeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCc--ceEeeeeccCCCCcccccc----
Q 014324          237 NKRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKE--PFINAMYDCDPLKQIFWSN----  310 (426)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~p~~~~~~~r----  310 (426)
                      ++...+.+...  .......... ..+.+...+.+.+.+..|.+.. .++.....  ...|..+...+.++|..+|    
T Consensus       195 ~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~l~~~f~~~~~~~-~li~~~~~~~~~~w~~~~~~~~~~w~~gr~~~~  270 (765)
T PRK08255        195 DDTSTFIVETP--EEVWRAAGLD-EMSQEESIAFCEKLFADYLDGH-PLMSNASHLRGSAWINFPRVVCERWVHWNRRVP  270 (765)
T ss_pred             CCCcEEEEEcC--HHHHHhcCCc-cCCHHHHHHHHHHHhHHhcCCC-cccccccccccceeeecceeccCCCccCCCccc
Confidence            65544433332  1110000001 1122233333344455564432 22222111  1224444445567899999    


Q ss_pred             EEEeccccccCCCCCcchhhhhHHHHHHHHHHHHhhccccHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhcC
Q 014324          311 VVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQGL  383 (426)
Q Consensus       311 v~LvGDAAh~~~P~~G~G~~~ai~Da~~La~~L~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~~  383 (426)
                      ++|+|||||.++|+.|||+|+||+||..|+++|.... .+.+.+|+.|++.|+++++.+++.++..+.+|...
T Consensus       271 v~liGDAAH~~~P~~GqG~~~aieDa~~La~~L~~~~-~~~~~al~~ye~~R~~r~~~~~~~s~~~~~~~~~~  342 (765)
T PRK08255        271 VVLMGDAAHTAHFSIGSGTKLALEDAIELARCLHEHP-GDLPAALAAYEEERRVEVLRIQNAARNSTEWFENV  342 (765)
T ss_pred             EEEEEcCcccCCCCcchhHHHHHHHHHHHHHHHHHcc-ccHHHHHHHHHHHHHHHHHHHHHHHHHhCceeeec
Confidence            9999999999999999999999999999999998764 37889999999999999999999999998888764

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=100.00  E-value=1.1e-31  Score=260.23  Aligned_cols=333  Identities=12%  Similarity=0.073  Sum_probs=195.5

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccc
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQN   84 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~   84 (426)
                      ..+||+||||||||+++|+.|+++|++|+|+||+....  .++|.+  ++   ...++++++  .+.+...... ...+.
T Consensus        38 ~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~--k~cgg~--i~---~~~l~~lgl--~~~~~~~~i~-~~~~~  107 (450)
T PLN00093         38 RKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNA--KPCGGA--IP---LCMVGEFDL--PLDIIDRKVT-KMKMI  107 (450)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCC--CCcccc--cc---HhHHhhhcC--cHHHHHHHhh-hheEe
Confidence            46899999999999999999999999999999986432  234544  43   356677766  3332221110 00111


Q ss_pred             cccccccccccccccCCCcchhccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecC-CceEEEEEEecc----CCceEE
Q 014324           85 QATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEV-KTTVTVKAKVLQ----TDEVIE  157 (426)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~-~~~v~v~~~~~~----~g~~~~  157 (426)
                       ...+..+..............++|..|++.|.+.+. .|+ ++.+ +++++....+ +..+.+++++..    +|+..+
T Consensus       108 -~p~~~~v~~~~~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~  185 (450)
T PLN00093        108 -SPSNVAVDIGKTLKPHEYIGMVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKT  185 (450)
T ss_pred             -cCCceEEEecccCCCCCeEEEecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCcEEEEEEeccccccCCCccE
Confidence             111111100000011112235899999999998765 477 7654 5777764322 234555543221    244456


Q ss_pred             EeecEEEeccCCchhhhhhhcCCCcccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEec----CCCceEEEE
Q 014324          158 IKGNLLVAADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDL----ASGTHSVFY  233 (426)
Q Consensus       158 ~~~d~vI~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~  233 (426)
                      ++||+||+|||++|.+|+.+....   ......+...+..+...         ..+  ......+++    .|+.|.|+|
T Consensus       186 v~a~~VIgADG~~S~vrr~lg~~~---~~~~~~~~~~~~~~~~~---------~~~--~~~~~~~~~g~~~~p~~Y~Wif  251 (450)
T PLN00093        186 LEVDAVIGADGANSRVAKDIDAGD---YDYAIAFQERIKIPDDK---------MEY--YEDLAEMYVGDDVSPDFYGWVF  251 (450)
T ss_pred             EEeCEEEEcCCcchHHHHHhCCCC---cceeEEEEEEEeCChhh---------ccc--cCCeEEEEeCCCCCCCceEEEE
Confidence            999999999999999999985331   11222333333222110         000  111222333    467899999


Q ss_pred             EecCCeeeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcC-cceEeeeeccCCCCccccccEE
Q 014324          234 ELLNKRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETK-EPFINAMYDCDPLKQIFWSNVV  312 (426)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~rv~  312 (426)
                      |.++ ..++........          .......+.+..        .+...+.... ........+..+.+++..+|++
T Consensus       252 P~g~-~~~VG~g~~~~~----------~~~~~~~~~l~~--------~~~~~l~~~~~~~~~~~~ip~~~~~~~~~~~vl  312 (450)
T PLN00093        252 PKCD-HVAVGTGTVVNK----------PAIKKYQRATRN--------RAKDKIAGGKIIRVEAHPIPEHPRPRRVRGRVA  312 (450)
T ss_pred             ECCC-cEEEEEEEccCC----------CChHHHHHHHHH--------HhhhhcCCCeEEEEEEEEcccccccceeCCCcE
Confidence            9884 444443221110          001111111111        1111111111 0111111223345567789999


Q ss_pred             EeccccccCCCCCcchhhhhHHHHHHHHHHHHhhccc----cHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhc
Q 014324          313 LIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVE----GLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQG  382 (426)
Q Consensus       313 LvGDAAh~~~P~~G~G~~~ai~Da~~La~~L~~~~~~----~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~  382 (426)
                      |||||||.++|++|+|++.||.+|..+|+.+.+....    .....|+.|++.++......+..+..+.++|..
T Consensus       313 LvGDAAg~v~P~tGeGI~~Am~sg~~AAe~i~~~~~~g~~~~s~~~L~~Y~~~~~~~~g~~~~~~~~l~~~~~~  386 (450)
T PLN00093        313 LVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSENGTRMVDEADLREYLRKWDKKYWPTYKVLDILQKVFYR  386 (450)
T ss_pred             EEeccccCCCccccccHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999999999876311    245779999998888787788888888887765

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=100.00  E-value=2.7e-31  Score=255.70  Aligned_cols=323  Identities=14%  Similarity=0.162  Sum_probs=190.3

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEccc-CCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKA-GGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ   85 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~-~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   85 (426)
                      |||+||||||||+++|+.|++.|++|+|+|++ ..+   ..++  ..+++.   .++.+++  .+.+...... ... ..
T Consensus         1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~---~~cg--~~i~~~---~l~~l~i--~~~~~~~~~~-~~~-~~   68 (388)
T TIGR02023         1 YDVAVIGGGPSGATAAETLARAGIETILLERALSNI---KPCG--GAIPPC---LIEEFDI--PDSLIDRRVT-QMR-MI   68 (388)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCc---CcCc--CCcCHh---hhhhcCC--chHHHhhhcc-eeE-EE
Confidence            69999999999999999999999999999998 322   1344  445553   5666665  3333222111 111 11


Q ss_pred             ccccccccccccccCCCcc-hhccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEec---cCCceEEEe
Q 014324           86 ATDNAKVTRTLARDDNFNF-RAAHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVL---QTDEVIEIK  159 (426)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~-~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~---~~g~~~~~~  159 (426)
                      ..++..+...  ......+ ..++|..|++.|.+.+. .|+ ++.+ +++++..+++  .+++++.+.   .+|+..+++
T Consensus        69 ~~~~~~~~~~--~~~~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~~--~~~v~~~~~~~~~~~~~~~i~  143 (388)
T TIGR02023        69 SPSRVPIKVT--IPSEDGYVGMVRREVFDSYLRERAQKAGAELIHG-LFLKLERDRD--GVTLTYRTPKKGAGGEKGSVE  143 (388)
T ss_pred             cCCCceeeec--cCCCCCceEeeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEcCC--eEEEEEEeccccCCCcceEEE
Confidence            1112111111  1111122 25899999999998764 477 7554 6888875443  555554321   133445699


Q ss_pred             ecEEEeccCCchhhhhhhcCCCcccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEe----cCCCceEEEEEe
Q 014324          160 GNLLVAADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFD----LASGTHSVFYEL  235 (426)
Q Consensus       160 ~d~vI~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~  235 (426)
                      ||+||+|||.+|.+|+.+.....  ......+...+..+...         ..+..  ....++    ..++.+.|++|.
T Consensus       144 a~~VI~AdG~~S~v~r~lg~~~~--~~~~~a~~~~~~~~~~~---------~~~~~--~~~~~~~~~~~~p~~y~wv~P~  210 (388)
T TIGR02023       144 ADVVIGADGANSPVAKELGLPKN--LPRVIAYQERIKLPDDK---------MAYYE--ELADVYYGGEVSPDFYGWVFPK  210 (388)
T ss_pred             eCEEEECCCCCcHHHHHcCCCCC--CcEEEEEEEEecCCchh---------cccCC--CeEEEEECCCcCCCceEEEeeC
Confidence            99999999999999999843221  11112233333222100         00111  111222    346778999998


Q ss_pred             cCCeeeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCc-ceEeeeeccCCCCccccccEEEe
Q 014324          236 LNKRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKE-PFINAMYDCDPLKQIFWSNVVLI  314 (426)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~rv~Lv  314 (426)
                      ++ ..++........          ....+..+.+.+. .   .      +..... .......+..+.++|..++++||
T Consensus       211 ~~-~~~vg~~~~~~~----------~~~~~~~~~l~~~-~---~------~~~~~~~~~~~~~ip~~~~~~~~~~~v~lv  269 (388)
T TIGR02023       211 GD-HIAVGTGTGTHG----------FDAKQLQANLRRR-A---G------LDGGQTIRREAAPIPMKPRPRWDFGRAMLV  269 (388)
T ss_pred             CC-eeEEeEEECCCC----------CCHHHHHHHHHHh-h---C------CCCceEeeeeeEeccccccccccCCCEEEE
Confidence            64 444443221100          0011112222111 0   0      111000 01111222345567778999999


Q ss_pred             ccccccCCCCCcchhhhhHHHHHHHHHHHHhhccccHHHHHHHHHHhhhhhHHHHHHHHHHhhhhh
Q 014324          315 GDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIK  380 (426)
Q Consensus       315 GDAAh~~~P~~G~G~~~ai~Da~~La~~L~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~  380 (426)
                      |||||.++|++|+|++.||++|..+++.+.+....+..+.|+.|++.++......+...+.+..++
T Consensus       270 GDAAg~v~P~tG~GI~~A~~sg~~aa~~i~~~l~~~~~~~L~~Y~~~~~~~~~~~~~~~~~~~~~~  335 (388)
T TIGR02023       270 GDAAGLVTPASGEGIYFAMKSGQMAAQAIAEYLQNGDATDLRHYERKFMKLYGTTFRVLRVLQMVY  335 (388)
T ss_pred             eccccCcCCcccccHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999998874333467899999999988876666666666555

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>PRK11445 putative oxidoreductase; Provisional

Probab=100.00  E-value=7.2e-31  Score=249.04  Aligned_cols=312  Identities=17%  Similarity=0.112  Sum_probs=180.3

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCC-CCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGS-PTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ   85 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~-~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   85 (426)
                      +||+||||||||+++|+.|+++ ++|+|+||++.+.... ...+|..++|++.++|+++|+................  .
T Consensus         2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~--~   78 (351)
T PRK11445          2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAVK--T   78 (351)
T ss_pred             ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccccceee--E
Confidence            7999999999999999999999 9999999998653111 1235678999999999999873111111100000000  0


Q ss_pred             ccccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEE
Q 014324           86 ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLV  164 (426)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI  164 (426)
                      .    .+...........+..++|..|+++|.+..+.++ +++++++++++..++  .+.+++  .++|+..+++||+||
T Consensus        79 ~----~~~~~~~~~~~~~~~~i~R~~~~~~L~~~~~~gv~v~~~~~v~~i~~~~~--~~~v~~--~~~g~~~~i~a~~vV  150 (351)
T PRK11445         79 I----DLANSLTRNYQRSYINIDRHKFDLWLKSLIPASVEVYHNSLCRKIWREDD--GYHVIF--RADGWEQHITARYLV  150 (351)
T ss_pred             e----cccccchhhcCCCcccccHHHHHHHHHHHHhcCCEEEcCCEEEEEEEcCC--EEEEEE--ecCCcEEEEEeCEEE
Confidence            0    0001111112224557999999999998766788 999999999986444  455553  246665568999999


Q ss_pred             eccCCchhhhhhhcCCCcccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEe-cCCCceEEEEEecCCeeeEE
Q 014324          165 AADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFD-LASGTHSVFYELLNKRLNWV  243 (426)
Q Consensus       165 ~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  243 (426)
                      +|||.+|.+|+++.....  ...+..+...+......            +.  ....+. -..+.+.|.+|..+ ...+.
T Consensus       151 ~AdG~~S~vr~~l~~~~~--~~~~~~~~~~~~~~~~~------------~~--~~~~f~~~~~~~~~W~~p~~~-~~~~g  213 (351)
T PRK11445        151 GADGANSMVRRHLYPDHQ--IRKYVAIQQWFAEKHPV------------PF--YSCIFDNEITDCYSWSISKDG-YFIFG  213 (351)
T ss_pred             ECCCCCcHHhHHhcCCCc--hhhEEEEEEEecCCCCC------------CC--cceEEeccCCCceEEEeCCCC-cEEec
Confidence            999999999999864422  12222222222211100            00  001111 11234566665533 22211


Q ss_pred             EEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcceEeeeeccCCCCc--cccccEEEeccccccC
Q 014324          244 WYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDPLKQ--IFWSNVVLIGDAAHPT  321 (426)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~rv~LvGDAAh~~  321 (426)
                       +.. +.          ..+.+.++.+.+...+ ....+.+.+....    ..+....+...  +..+|++|||||||.+
T Consensus       214 -~~~-~~----------~~~~~~~~~l~~~l~~-~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~vvlVGDAAg~i  276 (351)
T PRK11445        214 -GAY-PM----------KDGRERFETLKEKLSA-FGFQFGKPVKTEA----CTVLRPSRWQDFVCGKDNAFLIGEAAGFI  276 (351)
T ss_pred             -ccc-cc----------cchHHHHHHHHHHHHh-ccccccccccccc----ccccCcccccccccCCCCEEEEEcccCcc
Confidence             110 10          0112222221111000 0000111111000    00010111122  2348999999999999


Q ss_pred             CCCCcchhhhhHHHHHHHHHHHHhhccccHHHHHHHHHHhhhhhHH
Q 014324          322 TPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTVRLPVTS  367 (426)
Q Consensus       322 ~P~~G~G~~~ai~Da~~La~~L~~~~~~~~~~~L~~Y~~~R~~~~~  367 (426)
                      +|++|+|++.|++||..|++.|.+..    +..|+.|++.++.-.-
T Consensus       277 ~P~tG~Gi~~al~sa~~la~~l~~~~----~~~~~~y~~~~~~~~~  318 (351)
T PRK11445        277 SPSSLEGISYALDSARILSEVLNKQP----EKLNTAYWRKTRKLRL  318 (351)
T ss_pred             CCccCccHHHHHHhHHHHHHHHHhcc----cchHHHHHHHHHHHHH
Confidence            99999999999999999999998653    4558899888777553

>TIGR02028 ChlP geranylgeranyl reductase

Probab=100.00  E-value=3.7e-30  Score=247.64  Aligned_cols=330  Identities=13%  Similarity=0.091  Sum_probs=193.3

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccccc
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQA   86 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   86 (426)
                      +||+||||||||+++|+.|+++|++|+|+||.+.+.  .+++.+  +++   +.++++++  .+.+...... ..... .
T Consensus         1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~--~~cg~~--i~~---~~l~~~g~--~~~~~~~~i~-~~~~~-~   69 (398)
T TIGR02028         1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNA--KPCGGA--IPL---CMVDEFAL--PRDIIDRRVT-KMKMI-S   69 (398)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCC--CCcccc--ccH---hhHhhccC--chhHHHhhhc-eeEEe-c
Confidence            589999999999999999999999999999986543  234433  433   45677766  2222221111 01110 1


Q ss_pred             cccccccccccccCCCcc-hhccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEec-CCceEEEEEEecc----CCceEEE
Q 014324           87 TDNAKVTRTLARDDNFNF-RAAHWADLHGLLYNALP-PEI-FLRGHQYLSFCISE-VKTTVTVKAKVLQ----TDEVIEI  158 (426)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~-~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~-~~~~v~v~~~~~~----~g~~~~~  158 (426)
                      ..+..+.... .....++ ..++|..|++.|.+.+. .|+ ++.++ +++++... .+..+++++....    .|+..++
T Consensus        70 p~~~~~~~~~-~~~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i  147 (398)
T TIGR02028        70 PSNIAVDIGR-TLKEHEYIGMLRREVLDSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGTRCTL  147 (398)
T ss_pred             CCceEEEecc-CCCCCCceeeeeHHHHHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCCCccEE
Confidence            1111110000 0011122 36899999999998775 488 77664 77765422 2234445433221    1444569


Q ss_pred             eecEEEeccCCchhhhhhhcCCCcccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEec----CCCceEEEEE
Q 014324          159 KGNLLVAADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDL----ASGTHSVFYE  234 (426)
Q Consensus       159 ~~d~vI~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~  234 (426)
                      +||+||+|||.+|.+|+.+....   +.....+...+..+...           .........+++    .|+.|.|+||
T Consensus       148 ~a~~VIgADG~~S~v~~~~g~~~---~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~g~~~~p~gY~WifP  213 (398)
T TIGR02028       148 EVDAVIGADGANSRVAKEIDAGD---YSYAIAFQERIRLPDEK-----------MAYYDDLAEMYVGDDVSPDFYGWVFP  213 (398)
T ss_pred             EeCEEEECCCcchHHHHHhCCCC---cceEEEEEEEeeCChhh-----------cccCCCeEEEEeCCCCCCCceEEEEE
Confidence            99999999999999999985321   12222333233332110           000111223333    4678999999


Q ss_pred             ecCCeeeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcC-cceEeeeeccCCCCccccccEEE
Q 014324          235 LLNKRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETK-EPFINAMYDCDPLKQIFWSNVVL  313 (426)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~rv~L  313 (426)
                      .++ ..++......  .            ...++++.+....    .....+.... ........+..+.+++..+|++|
T Consensus       214 ~~~-~~~VG~g~~~--~------------~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~ll  274 (398)
T TIGR02028       214 KCD-HVAVGTGTVA--A------------KPEIKRLQSGIRA----RAAGKVAGGRIIRVEAHPIPEHPRPRRVVGRVAL  274 (398)
T ss_pred             CCC-eEEEEEEeCC--C------------CccHHHHHHhhhh----hhhhccCCCcEEEEEEEeccccccccEECCCEEE
Confidence            874 4444332110  0            0011222221111    0000010000 01111111223445677899999


Q ss_pred             eccccccCCCCCcchhhhhHHHHHHHHHHHHhhcc--c--cHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhc
Q 014324          314 IGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGV--E--GLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQG  382 (426)
Q Consensus       314 vGDAAh~~~P~~G~G~~~ai~Da~~La~~L~~~~~--~--~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~  382 (426)
                      ||||||.++|++|+|++.||.+|..+|+.+.+...  +  ..+..|+.|++..+......+..+..+.+++..
T Consensus       275 vGDAAg~v~P~tGeGI~~A~~sg~~aa~~i~~~~~~~~~~~~~~~l~~Y~~~~~~~~~~~~~~~~~~~~~~~~  347 (398)
T TIGR02028       275 VGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEESRLGGAVTEEGDLAGYLRRWDKEYRPTYRVLDLLQRVFYR  347 (398)
T ss_pred             EEcCCCCCCcccccchHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999999987631  1  246789999998888777788888888887765

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=99.97  E-value=4.3e-30  Score=238.83  Aligned_cols=291  Identities=19%  Similarity=0.126  Sum_probs=176.5

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccccc
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQA   86 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   86 (426)
                      +||+||||||+|+++|+.|+++|++|+|+||...+..   ..++..+.+++.+.+..++..   ....   . .......
T Consensus         1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~---~~~~~~~~~~~~~~l~~~~~~---~~~~---~-~~~~~~~   70 (295)
T TIGR02032         1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRY---KPCGGALSPRVLEELDLPLEL---IVNL---V-RGARFFS   70 (295)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCc---ccccCccCHhHHHHhcCCchh---hhhh---e-eeEEEEc
Confidence            6999999999999999999999999999999988653   446677888888777654321   1111   0 0001111


Q ss_pred             cccccccccccccCCCcchhccHHHHHHHHHhcCCC-Ce-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEE
Q 014324           87 TDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPP-EI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLV  164 (426)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~-~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI  164 (426)
                      ..++.+   ...........++|..+.+.|.+.+.+ ++ ++++++++++..+++  .+.+.+   .++. .++++|+||
T Consensus        71 ~~~~~~---~~~~~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~--~~~~~~---~~~~-~~~~a~~vv  141 (295)
T TIGR02032        71 PNGDSV---EIPIETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDD--RVVVIV---RGGE-GTVTAKIVI  141 (295)
T ss_pred             CCCcEE---EeccCCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCC--EEEEEE---cCcc-EEEEeCEEE
Confidence            122111   011112334568999999999987764 77 999999999986544  444432   2222 248999999


Q ss_pred             eccCCchhhhhhhcCCCcccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEe--cCCCceEEEEEecCCeeeE
Q 014324          165 AADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFD--LASGTHSVFYELLNKRLNW  242 (426)
Q Consensus       165 ~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  242 (426)
                      +|||.+|.+|+.+......... ...+...++.+....           .......++.  ..++.+.+++|..++..++
T Consensus       142 ~a~G~~s~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~v  209 (295)
T TIGR02032       142 GADGSRSIVAKKLGLRKEPREL-GVAARAEVEMPDEEV-----------DEDFVEVYIDRGISPGGYGWVFPKGDGTANV  209 (295)
T ss_pred             ECCCcchHHHHhcCCCCCCcce-eeEEEEEEecCCccc-----------CcceEEEEcCCCcCCCceEEEEeCCCCeEEE
Confidence            9999999999987422221111 233444444332110           0000011111  1245788899998887766


Q ss_pred             EEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcceEeeeeccCCCCccccccEEEeccccccCC
Q 014324          243 VWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDPLKQIFWSNVVLIGDAAHPTT  322 (426)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~rv~LvGDAAh~~~  322 (426)
                      .+....+.        ......+.++++...    . |.+... + ......+.+....+..++..+|++|+|||||+++
T Consensus       210 ~~~~~~~~--------~~~~~~~~~~~~~~~----~-~~l~~~-~-~~~~~~~~~~~~~~~~~~~~~~v~liGDAA~~~~  274 (295)
T TIGR02032       210 GVGSRSAE--------EGEDLKKYLKDFLAR----R-PELKDA-E-TVEVIGAPIPIGRPDDKTVRGNVLLVGDAAGHVK  274 (295)
T ss_pred             eeeeccCC--------CCCCHHHHHHHHHHh----C-cccccC-c-EEeeeceeeccCCCCCccccCCEEEEecccCCCC
Confidence            65443221        011123333333321    1 111110 0 0011222222234556778899999999999999


Q ss_pred             CCCcchhhhhHHHHHHHHHHH
Q 014324          323 PHGLRSTNMSILDAMVLGKSL  343 (426)
Q Consensus       323 P~~G~G~~~ai~Da~~La~~L  343 (426)
                      |+.|||+|+||+||..+|++|
T Consensus       275 P~~g~G~~~a~~~a~~aa~~~  295 (295)
T TIGR02032       275 PLTGEGIYYAMRSGDVAAEVI  295 (295)
T ss_pred             CccCCcHHHHHHHHHHHHhhC
Confidence            999999999999999999875

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]

Probab=99.97  E-value=3.2e-30  Score=229.80  Aligned_cols=383  Identities=17%  Similarity=0.149  Sum_probs=264.0

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccc
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQN   84 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~   84 (426)
                      ...||||||||.+|.++|+.|+|.|.+|.|+||+-..+...   -|..++|.+...|.++|+  .+.++.........+.
T Consensus        44 ~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~EPdRi---vGEllQPGG~~~L~~LGl--~Dcve~IDAQ~v~Gy~  118 (509)
T KOG1298|consen   44 GAADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSEPDRI---VGELLQPGGYLALSKLGL--EDCVEGIDAQRVTGYA  118 (509)
T ss_pred             CcccEEEECCcchHHHHHHHHhhCCcEEEEEecccccchHH---HHHhcCcchhHHHHHhCH--HHHhhcccceEeeeeE
Confidence            45899999999999999999999999999999998765422   478899999999999999  7888877766555555


Q ss_pred             ccccccccc--ccc-cccCCCcchhccHHHHHHHHHhcCC--CCeeEeeeeEEEEEEecCCceEEEEEEeccCCceEEEe
Q 014324           85 QATDNAKVT--RTL-ARDDNFNFRAAHWADLHGLLYNALP--PEIFLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIK  159 (426)
Q Consensus        85 ~~~~~~~~~--~~~-~~~~~~~~~~~~r~~l~~~L~~~~~--~~~i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~  159 (426)
                      .+.+|+.+.  ... ...........+.+.+.+-|++.+.  .++-.....|.++.+ +++....|+++ .+.|+..+..
T Consensus       119 ifk~gk~v~~pyP~~~f~~d~~GrsFhnGRFvq~lR~ka~slpNV~~eeGtV~sLle-e~gvvkGV~yk-~k~gee~~~~  196 (509)
T KOG1298|consen  119 IFKDGKEVDLPYPLKNFPSDPSGRSFHNGRFVQRLRKKAASLPNVRLEEGTVKSLLE-EEGVVKGVTYK-NKEGEEVEAF  196 (509)
T ss_pred             EEeCCceeeccCCCcCCCCCcccceeeccHHHHHHHHHHhcCCCeEEeeeeHHHHHh-ccCeEEeEEEe-cCCCceEEEe
Confidence            566666322  111 1223344566777888888888653  366223344555543 23322235554 4556667789


Q ss_pred             ecEEEeccCCchhhhhhhcCCCcccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEEEecCCe
Q 014324          160 GNLLVAADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELLNKR  239 (426)
Q Consensus       160 ~d~vI~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (426)
                      |.+.|.|||++|.+|+.+..+.-..  -...+.|.+-..          .+...|.++   ++.+++..++++|++....
T Consensus       197 ApLTvVCDGcfSnlRrsL~~~~v~~--V~S~fVG~vl~N----------~~l~~p~hg---hvIL~~pspil~Y~ISStE  261 (509)
T KOG1298|consen  197 APLTVVCDGCFSNLRRSLCDPKVEE--VPSYFVGLVLKN----------CRLPAPNHG---HVILSKPSPILVYQISSTE  261 (509)
T ss_pred             cceEEEecchhHHHHHHhcCCcccc--cchheeeeeecC----------CCCCCCCcc---eEEecCCCcEEEEEecchh
Confidence            9999999999999999985322111  112222322211          112234433   4567788899999999998


Q ss_pred             eeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCc--ceEeeeeccCCCCccccccEEEeccc
Q 014324          240 LNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKE--PFINAMYDCDPLKQIFWSNVVLIGDA  317 (426)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~p~~~~~~~rv~LvGDA  317 (426)
                      +++.+-++.+.       .+.....++...+.+...+...+.+++.+.....  .++.......|.......+++|+|||
T Consensus       262 vRcl~~v~g~~-------~Psi~~gem~~~mk~~v~PqiP~~lR~~F~~av~~g~irsmpn~~mpa~~~~~~G~illGDA  334 (509)
T KOG1298|consen  262 VRCLVDVPGQK-------LPSIANGEMATYMKESVAPQIPEKLRESFLEAVDEGNIRSMPNSSMPATLNDKKGVILLGDA  334 (509)
T ss_pred             eEEEEecCccc-------CCcccchhHHHHHHHhhCcCCCHHHHHHHHHHhhccchhcCccccCCCCcCCCCceEEEccc
Confidence            88776654321       1222244555555555555556666655433221  22222222344444556899999999


Q ss_pred             cccCCCCCcchhhhhHHHHHHHHHHHHhhc----cccHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhcCCCCCCCCCCC
Q 014324          318 AHPTTPHGLRSTNMSILDAMVLGKSLEKWG----VEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQGLALPDREPFNT  393 (426)
Q Consensus       318 Ah~~~P~~G~G~~~ai~Da~~La~~L~~~~----~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (426)
                      ..+-+|..|.||..|+.|...|.+.|....    .+.+-+.+++|...|++....+...+..+.++|....++..     
T Consensus       335 fNMRHPltggGMtV~l~Di~lLr~ll~pl~dL~d~ekv~~~i~sFy~~RKp~s~tINtLa~Aly~vf~as~dea~-----  409 (509)
T KOG1298|consen  335 FNMRHPLTGGGMTVALSDIVLLRRLLKPLPDLSDAEKVSDYIKSFYWIRKPYSATINTLANALYQVFVASTDEAR-----  409 (509)
T ss_pred             ccccCCccCCceEeehhHHHHHHHHhccccccccHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhcCCchHHH-----
Confidence            999999999999999999999999997643    23456889999999999999999999999999988644332     


Q ss_pred             CCCChhhhHHHhhccCCcccCCCcccccc
Q 014324          394 KTASPQDCQELQQKTMPFFADLPSLVDST  422 (426)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (426)
                       -...+.|.+++..+..+++|.-.++-.+
T Consensus       410 -~~mr~gCfdYl~~GG~c~sGpv~lLsGl  437 (509)
T KOG1298|consen  410 -KAMRKGCFDYLKRGGFCVSGPVALLSGL  437 (509)
T ss_pred             -HHHHHHHHHHHhcCCccccchHHHhcCC
Confidence             2334689999999999999988777544

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=99.97  E-value=2.6e-29  Score=242.00  Aligned_cols=329  Identities=20%  Similarity=0.225  Sum_probs=202.5

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccc
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQN   84 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~   84 (426)
                      ..+||+||||||||++||+.|+++|++|+|+||...++...  .++-.+.+..++-+   .+.....+.   ........
T Consensus         2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~--~~~~~~~~~~l~~l---~~~~~~~i~---~~v~~~~~   73 (396)
T COG0644           2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKP--CCGGGLSPRALEEL---IPDFDEEIE---RKVTGARI   73 (396)
T ss_pred             ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCc--cccceechhhHHHh---CCCcchhhh---eeeeeeEE
Confidence            45899999999999999999999999999999999998643  23344666544433   331111111   11111111


Q ss_pred             cccccccccccccccCCCcchhccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecE
Q 014324           85 QATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNL  162 (426)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~  162 (426)
                      ... +...   .........+.++|..+.++|.+.++ .|+ ++.++++.++..+++...+.+.    .++  .++++++
T Consensus        74 ~~~-~~~~---~~~~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~----~~~--~e~~a~~  143 (396)
T COG0644          74 YFP-GEKV---AIEVPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVR----AGD--DEVRAKV  143 (396)
T ss_pred             Eec-CCce---EEecCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEE----cCC--EEEEcCE
Confidence            111 1111   11111134678999999999998776 588 9999999999976554444432    222  4599999


Q ss_pred             EEeccCCchhhhhhhcCCCcccccce-EEEEEEeeCCCCCchHHHhhhhcccCCCCceee--EecCCCceEEEEEecCCe
Q 014324          163 LVAADGCLSSIRQSFLSDFKLRYSGY-CAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLY--FDLASGTHSVFYELLNKR  239 (426)
Q Consensus       163 vI~AdG~~S~vR~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  239 (426)
                      ||+|||.+|.+++.+... ......+ .....++..+..             .......+  ....+.++.|+||..++.
T Consensus       144 vI~AdG~~s~l~~~lg~~-~~~~~~~~~~~~e~~~~~~~-------------~~~~~~~~~~~~~~~~Gy~wifP~~~~~  209 (396)
T COG0644         144 VIDADGVNSALARKLGLK-DRKPEDYAIGVKEVIEVPDD-------------GDVEEFLYGPLDVGPGGYGWIFPLGDGH  209 (396)
T ss_pred             EEECCCcchHHHHHhCCC-CCChhheeEEeEEEEecCCC-------------CceEEEEecCCccCCCceEEEEECCCce
Confidence            999999999999998655 2222222 223333333200             00011111  135678999999999998


Q ss_pred             eeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhh-cCcceEeeeec-cCCCCc-cccccEEEecc
Q 014324          240 LNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKE-TKEPFINAMYD-CDPLKQ-IFWSNVVLIGD  316 (426)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~p~~~-~~~~rv~LvGD  316 (426)
                      .++........+.       .....+.++++.+      ++.....+.. ..........+ ..+... +..+++++|||
T Consensus       210 ~~VG~g~~~~~~~-------~~~~~~~l~~f~~------~~~~~~~~~~~~~~~~~~~~ip~~g~~~~~~~~~~~~lvGD  276 (396)
T COG0644         210 ANVGIGVLLDDPS-------LSPFLELLERFKE------HPAIRKLLLGGKILEYAAGGIPEGGPASRPLVGDGVLLVGD  276 (396)
T ss_pred             EEEEEEEecCCcC-------CCchHHHHHHHHh------CcccchhccCCceEEEeeeecccCCcCCCccccCCEEEEec
Confidence            8888776544311       1101133343332      1112221111 11111111222 222222 56799999999


Q ss_pred             ccccCCCCCcchhhhhHHHHHHHHHHHHhhccccHHHHHHHHHHhhhhhHHHHHHHHHHhhhh
Q 014324          317 AAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTVRLPVTSKQVLHSRRLGRI  379 (426)
Q Consensus       317 AAh~~~P~~G~G~~~ai~Da~~La~~L~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~  379 (426)
                      ||.+++|+.|+|+..||.+|..+|+.+.+....+ .+.|..|++..+...........+..+.
T Consensus       277 AAg~v~p~~g~Gi~~A~~sg~~Aa~~i~~~~~~~-~~~l~~Y~~~~~~~~~~~~~~~~~~~~~  338 (396)
T COG0644         277 AAGFVNPLTGEGIRYAIKSGKLAAEAIAEALEGG-EEALAEYERLLRKSLAREDLKSLRLLKL  338 (396)
T ss_pred             cccCCCCcccCcHHHHHHHHHHHHHHHHHHHHcC-hhHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            9999999999999999999999999999875333 6778889988887665554444444433

>PRK10015 oxidoreductase; Provisional

Probab=99.96  E-value=1.8e-27  Score=230.64  Aligned_cols=350  Identities=17%  Similarity=0.173  Sum_probs=190.4

Q ss_pred             CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCc--hhhhccCcceee
Q 014324            4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRP--HLLHLATVPLTI   81 (426)
Q Consensus         4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~--~~~~~~~~~~~~   81 (426)
                      +.++||+||||||||+++|+.|+++|++|+|+||.+.++....+|.  .+.....+   .+.+...  ..+........+
T Consensus         3 ~~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg--~i~~~~~~---~l~~~~~~~~~i~~~~~~~~~   77 (429)
T PRK10015          3 DDKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGG--RLYAHTLE---AIIPGFAASAPVERKVTREKI   77 (429)
T ss_pred             ccccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCc--eeecccHH---HHcccccccCCccccccceeE
Confidence            3579999999999999999999999999999999998765332232  23333322   2211100  011111111001


Q ss_pred             ccccccccc-cccc--cccccCCCcchhccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceE
Q 014324           82 DQNQATDNA-KVTR--TLARDDNFNFRAAHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVI  156 (426)
Q Consensus        82 ~~~~~~~~~-~~~~--~~~~~~~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~  156 (426)
                      .+. ..++. .+..  ..........+.+.|..++++|.+.+. .|+ ++.+++|+++..++  ..+...   ..++.  
T Consensus        78 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~--~~v~~v---~~~~~--  149 (429)
T PRK10015         78 SFL-TEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREG--NKVTGV---QAGDD--  149 (429)
T ss_pred             EEE-eCCCceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEeC--CEEEEE---EeCCe--
Confidence            000 01111 0100  000011123567899999999988775 488 99999999987543  234321   12232  


Q ss_pred             EEeecEEEeccCCchhhhhhhcCCCcccccc-eEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCC-Cc---eEE
Q 014324          157 EIKGNLLVAADGCLSSIRQSFLSDFKLRYSG-YCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLAS-GT---HSV  231 (426)
Q Consensus       157 ~~~~d~vI~AdG~~S~vR~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~  231 (426)
                      +++||+||+|||.+|.+++.+.......... .......+..+    ...+..........+..+++.-.+ ++   +.|
T Consensus       150 ~i~A~~VI~AdG~~s~v~~~lg~~~~~~~~~~~~gvk~~~~~~----~~~i~~~~~~~~~~g~~w~~~g~~~~g~~g~G~  225 (429)
T PRK10015        150 ILEANVVILADGVNSMLGRSLGMVPASDPHHYAVGVKEVIGLT----PEQINDRFNITGEEGAAWLFAGSPSDGLMGGGF  225 (429)
T ss_pred             EEECCEEEEccCcchhhhcccCCCcCCCcCeEEEEEEEEEeCC----HHHhhHhhcCCCCCCeEEEecCccCCCCCCceE
Confidence            4899999999999999999874211111111 12222223222    111111100111112222222111 11   345


Q ss_pred             EEEecCCeeeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCc-ceEeeeec---cCCCCccc
Q 014324          232 FYELLNKRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKE-PFINAMYD---CDPLKQIF  307 (426)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~p~~~~~  307 (426)
                      +|+ ..+.+++.+.........     ......+.++++.      .+|.+.+++..... .......+   ...+++..
T Consensus       226 ~~~-~~d~v~vGv~~~~~~~~~-----~~~~~~~~l~~~~------~~p~~~~~~~~~~~~e~~~~~ip~gg~~~~~~~~  293 (429)
T PRK10015        226 LYT-NKDSISLGLVCGLGDIAH-----AQKSVPQMLEDFK------QHPAIRPLISGGKLLEYSAHMVPEGGLAMVPQLV  293 (429)
T ss_pred             EEE-cCCcEEEEEEEehhhhcc-----CCCCHHHHHHHHh------hChHHHHHhcCCEEEEEeeEEcccCCcccCCccc
Confidence            554 345566554332211100     0111233333332      24566666643321 11122211   12345667


Q ss_pred             cccEEEeccccccCC--CCCcchhhhhHHHHHHHHHHHHhhcc--ccHHHHHHHHHHhhhhhH-HHHHHHHHHhhhhhhc
Q 014324          308 WSNVVLIGDAAHPTT--PHGLRSTNMSILDAMVLGKSLEKWGV--EGLLSALEEYQTVRLPVT-SKQVLHSRRLGRIKQG  382 (426)
Q Consensus       308 ~~rv~LvGDAAh~~~--P~~G~G~~~ai~Da~~La~~L~~~~~--~~~~~~L~~Y~~~R~~~~-~~~~~~~~~~~~~~~~  382 (426)
                      .+++++|||||+.++  |+.|+||+.||.++..+|+.+.+...  +.....|+.|++..+... .+-++..+++..++..
T Consensus       294 ~~g~llvGDAAg~v~p~~~~g~Gi~~A~~SG~~AAe~i~~a~~~~d~s~~~l~~Y~~~~~~~~~~~~l~~~~~~~~~~~~  373 (429)
T PRK10015        294 NDGVMIVGDAAGFCLNLGFTVRGMDLAIASAQAAATTVIAAKERADFSASSLAQYKRELEQSCVMRDMQHFRKIPALMEN  373 (429)
T ss_pred             cCCeEEEecccccccccCccccchhHHHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHCHHHHHHHHHhChHhhhcC
Confidence            899999999999998  46999999999999999999987632  335677899999888653 3324555555555543

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=99.96  E-value=1.6e-26  Score=224.42  Aligned_cols=348  Identities=14%  Similarity=0.149  Sum_probs=187.0

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCch--hhhccCcceeec
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPH--LLHLATVPLTID   82 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~   82 (426)
                      +.+||+||||||||+++|+.|+++|++|+|+||.+.++....+| +. +.....+   .+......  .+..........
T Consensus         4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~g-g~-l~~~~~e---~l~~~~~~~~~~~~~~~~~~~~   78 (428)
T PRK10157          4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTG-GR-LYAHSLE---HIIPGFADSAPVERLITHEKLA   78 (428)
T ss_pred             ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCccccc-ce-echhhHH---HHhhhhhhcCcccceeeeeeEE
Confidence            56999999999999999999999999999999999886533222 22 3333322   22110000  011100000000


Q ss_pred             cccccccc-ccccc--ccccCCCcchhccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEE
Q 014324           83 QNQATDNA-KVTRT--LARDDNFNFRAAHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIE  157 (426)
Q Consensus        83 ~~~~~~~~-~~~~~--~~~~~~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~  157 (426)
                      + ...++. .+...  .........+.+.|..++++|.+.+. .|+ ++.+++|+++..++  ..+.+.   ..+|.+  
T Consensus        79 ~-~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~--g~v~~v---~~~g~~--  150 (428)
T PRK10157         79 F-MTEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRD--GKVVGV---EADGDV--  150 (428)
T ss_pred             E-EcCCCceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeC--CEEEEE---EcCCcE--
Confidence            0 011111 00000  00111223567889999999998775 488 99999999988643  233222   234543  


Q ss_pred             EeecEEEeccCCchhhhhhhcCCCcccccce-EEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCC----ceEEE
Q 014324          158 IKGNLLVAADGCLSSIRQSFLSDFKLRYSGY-CAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASG----THSVF  232 (426)
Q Consensus       158 ~~~d~vI~AdG~~S~vR~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~  232 (426)
                      ++||+||+|||.+|.+++.+....+...... ..+...+..+.    ..+..........+...++.-.+.    ++.|+
T Consensus       151 i~A~~VI~A~G~~s~l~~~lgl~~~~~~~~~av~~~~~~~~~~----~~~~~~~~~~~~~g~~~~~~g~~~~g~~ggG~~  226 (428)
T PRK10157        151 IEAKTVILADGVNSILAEKLGMAKRVKPTDVAVGVKELIELPK----SVIEDRFQLQGNQGAACLFAGSPTDGLMGGGFL  226 (428)
T ss_pred             EECCEEEEEeCCCHHHHHHcCCCCCCCCcEEEEEEEEEEEcCH----HHHHHhhccCCCCCeEEEEEECCCCCCcCceeE
Confidence            8999999999999999998743322222211 22222333321    111110000011122222211111    12355


Q ss_pred             EEecCCeeeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCc-ceEe---eeeccCCCCcccc
Q 014324          233 YELLNKRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKE-PFIN---AMYDCDPLKQIFW  308 (426)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~p~~~~~~  308 (426)
                      |+ ..+..++.+.........     ......+.++.+.      -.|.+...+..... ....   +.......++...
T Consensus       227 ~~-~~~~~svG~~~~~~~~~~-----~~~~~~~~l~~~~------~~p~v~~~~~~~~~~~~~~~~ip~~g~~~~~~~~~  294 (428)
T PRK10157        227 YT-NENTLSLGLVCGLHHLHD-----AKKSVPQMLEDFK------QHPAVAPLIAGGKLVEYSAHVVPEAGINMLPELVG  294 (428)
T ss_pred             EE-cCCeEEEEEEEehHHhcc-----cCCCHHHHHHHHH------hCchHHHHhCCCeEHHHHhhHhhcCCcccCCceec
Confidence            53 344555555443221100     0111223333221      13444444432211 0111   1111123445667


Q ss_pred             ccEEEeccccccCCC--CCcchhhhhHHHHHHHHHHHHhhc--cccHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhh
Q 014324          309 SNVVLIGDAAHPTTP--HGLRSTNMSILDAMVLGKSLEKWG--VEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQ  381 (426)
Q Consensus       309 ~rv~LvGDAAh~~~P--~~G~G~~~ai~Da~~La~~L~~~~--~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~  381 (426)
                      +++++|||||..++|  +.|+|++.||.++..+|+.+.+..  ++.....|..|++..+.-+-+-++..+++..++.
T Consensus       295 ~g~llvGDAAg~v~p~g~~g~Gi~~A~~SG~lAAeai~~a~~~~~~s~~~l~~Y~~~l~~~~~~~l~~~~~~~~~~~  371 (428)
T PRK10157        295 DGVLIAGDAAGMCMNLGFTIRGMDLAIAAGEAAAKTVLSAMKSDDFSKQKLAEYRQHLESGPLRDMRMYQKLPAFLD  371 (428)
T ss_pred             CCeEEEecccccccccCceeeeHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHhHHHHHHHHhccHHHhc
Confidence            999999999999998  699999999999999999987763  2345678999998777765333444444444443

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=99.94  E-value=7.3e-25  Score=211.58  Aligned_cols=318  Identities=13%  Similarity=0.023  Sum_probs=168.5

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccccc
Q 014324            8 KAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQAT   87 (426)
Q Consensus         8 ~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (426)
                      ||+||||||||+++|+.|++.|++|+|+|+.+..+..    ..+.+.+..   ++.+++  .+.+. .....  ......
T Consensus         1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~----~~~~~~~~~---~~~~~~--~~~~~-~~~~~--~~~~~~   68 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGN----HTYGVWDDD---LSDLGL--ADCVE-HVWPD--VYEYRF   68 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCC----ccccccHhh---hhhhch--hhHHh-hcCCC--ceEEec
Confidence            7999999999999999999999999999999765421    122232221   223322  11111 00000  000000


Q ss_pred             ccccccccccccCCCcchhccHHHHHHHHHhcCCC-CeeEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEec
Q 014324           88 DNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPP-EIFLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAA  166 (426)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~-~~i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~A  166 (426)
                      .+..      .....++..++|..+.+.|.+.+.+ ++..+.++++++..+ +...+.++   ..+|++  ++|++||+|
T Consensus        69 ~~~~------~~~~~~~~~i~~~~l~~~l~~~~~~~gv~~~~~~v~~i~~~-~~~~~~v~---~~~g~~--~~a~~VI~A  136 (388)
T TIGR01790        69 PKQP------RKLGTAYGSVDSTRLHEELLQKCPEGGVLWLERKAIHAEAD-GVALSTVY---CAGGQR--IQARLVIDA  136 (388)
T ss_pred             CCcc------hhcCCceeEEcHHHHHHHHHHHHHhcCcEEEccEEEEEEec-CCceeEEE---eCCCCE--EEeCEEEEC
Confidence            1100      0112345568999999999887764 663346688888753 23455555   456654  899999999


Q ss_pred             cCCchhhhhhhcCCCcccccceEEEEEE-eeCCCCCchHHHhhhhcccCCCCce-eeEecCCCceEEEEEecCCeeeEEE
Q 014324          167 DGCLSSIRQSFLSDFKLRYSGYCAWRGV-LDFSGIEDSEIIKGMRRVYPDLGKC-LYFDLASGTHSVFYELLNKRLNWVW  244 (426)
Q Consensus       167 dG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  244 (426)
                      ||.+|.+++...+ .   ..++....|. +..+....+.... ...++...... .........+.+++|..++...+..
T Consensus       137 ~G~~s~~~~~~~~-~---~~~~q~~~G~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~~~~~~f~~~lP~~~~~~~v~~  211 (388)
T TIGR01790       137 RGFGPLVQYVRFP-L---NVGFQVAYGVEARLSRPPHGPSSM-VIMDARVDQLAAPELKGYRPTFLYAMPLGSTRVFIEE  211 (388)
T ss_pred             CCCchhcccccCC-C---CceEEEEEEEEEEEcCCCCCCCce-EEEeccccccccccccCCCCceEEEeecCCCeEEEEe
Confidence            9999977644311 1   1122222222 2221111000000 00001000000 0000000126777887766543321


Q ss_pred             EEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcceEeeeeccCCCCccccccEEEeccccccCCCC
Q 014324          245 YINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDPLKQIFWSNVVLIGDAAHPTTPH  324 (426)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~rv~LvGDAAh~~~P~  324 (426)
                      .. ...        ....+.+.+++.+....+.......+++     ...+...+.....++..+|+++||||||.++|+
T Consensus       212 ~~-~~~--------~~~~~~~~~~~~l~~~~~~~g~~~~~i~-----~~~~~~iP~~~~~~~~~~rv~liGdAAg~~~P~  277 (388)
T TIGR01790       212 TS-LAD--------RPALPRDRLRQRILARLNAQGWQIKTIE-----EEEWGALPVGLPGPFLPQRVAAFGAAAGMVHPT  277 (388)
T ss_pred             cc-ccC--------CCCCCHHHHHHHHHHHHHHcCCeeeEEE-----eeeeEEEecccCCCccCCCeeeeechhcCcCCc
Confidence            11 000        0111333333333322221110111111     011111111111123679999999999999999


Q ss_pred             CcchhhhhHHHHHHHHHHHHhhccccHHHHHHHHHHhhhhhHHH
Q 014324          325 GLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTVRLPVTSK  368 (426)
Q Consensus       325 ~G~G~~~ai~Da~~La~~L~~~~~~~~~~~L~~Y~~~R~~~~~~  368 (426)
                      +|+|++.|+++|..|++.|.+....+.+.+++.|++..+++..+
T Consensus       278 tG~Gi~~al~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~  321 (388)
T TIGR01790       278 TGYSVARALSDAPGLAAAIAQALCQSSELATAAWDGLWPTERRR  321 (388)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHhchHHHHH
Confidence            99999999999999999998775455678899998776665554

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]

Probab=99.92  E-value=2.1e-24  Score=194.90  Aligned_cols=354  Identities=19%  Similarity=0.194  Sum_probs=209.1

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHc----CCcEEEEcccCCCCCCC------CCcceeccChhHHHHHHHHhcCCchhhhc
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRA----GWDVVVLEKAGGPPTGS------PTGAGLGLDRPAQRIIQSWLNGRPHLLHL   74 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~----G~~v~v~E~~~~~~~~~------~~~~~~~l~~~~~~~l~~~~~~~~~~~~~   74 (426)
                      ..+||+||||||+|+++|..|+.+    -++|.++|....+.-..      -..+-..++|.+...++.++.  .+.+..
T Consensus        35 ~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~~~~~~~~f~Nrvss~s~~s~~~fk~~~a--wd~i~~  112 (481)
T KOG3855|consen   35 AKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLGDFKPSETFSNRVSSISPASISLFKSIGA--WDHIFH  112 (481)
T ss_pred             ccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCccccccccCccccceeecCCcchHHHHHhcCH--HHHhhh
Confidence            368999999999999999999965    47999999984432111      122356789999999998876  333332


Q ss_pred             c-CcceeeccccccccccccccccccCCCc---chhccHHHHHHHHHh--c--CCCCe-eEeeeeEEEEEEe------cC
Q 014324           75 A-TVPLTIDQNQATDNAKVTRTLARDDNFN---FRAAHWADLHGLLYN--A--LPPEI-FLRGHQYLSFCIS------EV  139 (426)
Q Consensus        75 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~r~~l~~~L~~--~--~~~~~-i~~~~~v~~~~~~------~~  139 (426)
                      . ..+...  ...+++.....+....+...   .+.+....++..|..  .  ....+ |....++.++...      +.
T Consensus       113 ~R~~~~~~--~~v~Ds~s~a~I~~~~d~~~~d~a~iien~nIq~sL~~s~~~s~~~nv~vi~~~k~~~~~~~~~l~~~~n  190 (481)
T KOG3855|consen  113 DRYQKFSR--MLVWDSCSAALILFDHDNVGIDMAFIIENDNIQCSLYNSQLDSESDNVTVINMAKVIDCTIPEYLIKNDN  190 (481)
T ss_pred             hccccccc--eeeecccchhhhhhccccccccceeeeehhHHHHHHHHHHHhhhcCceeeecccceeeeccccccCCCCC
Confidence            2 222211  11122221111111111111   233444555555552  2  22466 8888888887763      12


Q ss_pred             CceEEEEEEeccCCceEEEeecEEEeccCCchhhhhhhcCCC-cccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCc
Q 014324          140 KTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSIRQSFLSDF-KLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGK  218 (426)
Q Consensus       140 ~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~vR~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (426)
                      ...+.++   +.||..  +.+|++|||||.+|.+|+....+. ...|..+ +..+.+.+...             .....
T Consensus       191 ~~~~~i~---l~dg~~--~~~~LLigAdg~Ns~vR~~snid~~~~ny~~h-avVAtl~l~~~-------------~~~~~  251 (481)
T KOG3855|consen  191 GMWFHIT---LTDGIN--FATDLLIGADGFNSVVRKASNIDVASWNYDQH-AVVATLKLEEE-------------AILNG  251 (481)
T ss_pred             cceEEEE---eccCce--eeeceeeccccccchhhhhcCCCcccccccce-eeeEEEEeccc-------------ccccc
Confidence            2233444   677875  899999999999999999974222 1122222 12222222221             11111


Q ss_pred             eeeEecCCCceEEEEEecCCeeeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhc------------cc-------
Q 014324          219 CLYFDLASGTHSVFYELLNKRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKV------------WL-------  279 (426)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~-------  279 (426)
                      ..+..+-|.+++.+.|.+++..+++|........     .....+++.+-.++...+..            +.       
T Consensus       252 ~AwQRFlP~GpiAllpl~d~~s~LvWSts~~~a~-----~L~~lp~e~fv~~lNsaf~~q~~~~~~~~~~~~al~~~~~~  326 (481)
T KOG3855|consen  252 VAWQRFLPTGPIALLPLSDTLSSLVWSTSPENAS-----ILKSLPEERFVDLLNSAFSSQNPRAAYSDDADFALNGRAQL  326 (481)
T ss_pred             hhHHhcCCCCceeecccccccccceeecCHHHHH-----HHhcCCchhHHHHHHHHHhccCCCchhhhchhhhhcchhhc
Confidence            2234566778888999999999999987632211     01112222222221111100            00       


Q ss_pred             -HHHHHHhh-hcC---cceEeeee----ccCCC-----CccccccEEEeccccccCCCCCcchhhhhHHHHHHHHHHHHh
Q 014324          280 -PEFVKVIK-ETK---EPFINAMY----DCDPL-----KQIFWSNVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEK  345 (426)
Q Consensus       280 -~~~~~~~~-~~~---~~~~~~~~----~~~p~-----~~~~~~rv~LvGDAAh~~~P~~G~G~~~ai~Da~~La~~L~~  345 (426)
                       +.+..-.. ...   ++....+.    -.+|+     +.++.+|+.|+|||||.++|..|||.|+++.|+..|...|.+
T Consensus       327 ~~sl~~~~k~~~~~q~pp~V~~v~dksRa~FPLgf~ha~~yV~~~~Al~GDAAHr~hPlAgqGvNlg~~dV~~L~~sL~~  406 (481)
T KOG3855|consen  327 SESLLNTSKRLANQQYPPSVFEVGDKSRAQFPLGFGHADEYVTDRVALIGDAAHRVHPLAGQGVNLGFSDVKILVDSLSE  406 (481)
T ss_pred             cHHHHhccCcccccccCCeEEEecccceeecccccccHHHhcCCchhhhcchhhccccCcccccCCChhhHHHHHHHHHH
Confidence             00100000 000   11111110    13333     345669999999999999999999999999999999999988


Q ss_pred             hc----cccHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhcCCCC
Q 014324          346 WG----VEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQGLALP  386 (426)
Q Consensus       346 ~~----~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~~~~~  386 (426)
                      +.    .-....-|+.|+.+|.+....+.-....+.++|+....|
T Consensus       407 ai~~g~DlgS~~~L~~y~~~~~~~N~~ll~~vdkl~klY~t~~p~  451 (481)
T KOG3855|consen  407 AIVSGLDLGSVEHLEPYERERLQHNYVLLGAVDKLHKLYATSAPP  451 (481)
T ss_pred             HHHhcccccchhhhhHHHHHHhhhcchHHHHHHHHHHHHhccCCc
Confidence            63    223457799999999998888888888899999876555

>PLN02697 lycopene epsilon cyclase

Probab=99.92  E-value=1.2e-22  Score=199.01  Aligned_cols=333  Identities=12%  Similarity=-0.009  Sum_probs=180.5

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccc
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQN   84 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~   84 (426)
                      ..+||+||||||||+++|+.|++.|++|+|+|+.....      ..+++..   ..++.+++  .+.+... ...  ...
T Consensus       107 ~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~------~n~GvW~---~~l~~lgl--~~~i~~~-w~~--~~v  172 (529)
T PLN02697        107 GTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT------NNYGVWE---DEFKDLGL--EDCIEHV-WRD--TIV  172 (529)
T ss_pred             CcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCC------Cccccch---hHHHhcCc--HHHHHhh-cCC--cEE
Confidence            45899999999999999999999999999999864332      1122222   23455554  2222211 110  001


Q ss_pred             cccccccccccccccCCCcchhccHHHHHHHHHhcCCC-CeeEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEE
Q 014324           85 QATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPP-EIFLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLL  163 (426)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~-~~i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~v  163 (426)
                      ...++...    .  ...++..++|..|.+.|.+.+.+ |+...+++|+++..+++...+ ++   ..+|.+  ++|++|
T Consensus       173 ~~~~~~~~----~--~~~~Yg~V~R~~L~~~Ll~~a~~~GV~~~~~~V~~I~~~~~~~~v-v~---~~dG~~--i~A~lV  240 (529)
T PLN02697        173 YLDDDKPI----M--IGRAYGRVSRTLLHEELLRRCVESGVSYLSSKVDRITEASDGLRL-VA---CEDGRV--IPCRLA  240 (529)
T ss_pred             EecCCcee----e--ccCcccEEcHHHHHHHHHHHHHhcCCEEEeeEEEEEEEcCCcEEE-EE---EcCCcE--EECCEE
Confidence            11111110    0  12334468999999999887754 773378899998854433222 22   356654  899999


Q ss_pred             EeccCCchhhhhhhc-CCCcccccceEEEEEEeeCCCCCchHHHhhhhcccCCCC--ceeeEecCCCceEEEEEecCCee
Q 014324          164 VAADGCLSSIRQSFL-SDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLG--KCLYFDLASGTHSVFYELLNKRL  240 (426)
Q Consensus       164 I~AdG~~S~vR~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  240 (426)
                      |+|||++|.  +.+. +...+.......+...+.++....++... +-.++....  .......+...+.+++|..++..
T Consensus       241 I~AdG~~S~--rl~~~~~~~~~~~~Q~a~Gi~ve~~~~~~d~~~~-vlMD~r~~~~~~~~~~~~~~p~FlYvlP~~~~~~  317 (529)
T PLN02697        241 TVASGAASG--RLLQYEVGGPRVCVQTAYGVEVEVENNPYDPSLM-VFMDYRDYFKEKVSHLEAEYPTFLYAMPMSSTRV  317 (529)
T ss_pred             EECCCcChh--hhhccccCCCCcccEEEEEEEEEecCCCCCcchh-eeeccccccccccccccCCCceEEEEeecCCCeE
Confidence            999999993  2221 11122222333444444443211111111 111111100  00000111224667778777766


Q ss_pred             eEEEE-EecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcceEeeeec-cCCCCccccccEEEecccc
Q 014324          241 NWVWY-INQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYD-CDPLKQIFWSNVVLIGDAA  318 (426)
Q Consensus       241 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~rv~LvGDAA  318 (426)
                      .+--. +....          ..+.+.+++.+..+.+...-...++++     ..+...+ ..+++.. .++++++||||
T Consensus       318 ~VE~T~l~~~~----------~l~~~~l~~~L~~~l~~~Gi~~~~i~~-----~E~g~iPm~g~~~~~-~~~vl~vG~AA  381 (529)
T PLN02697        318 FFEETCLASKD----------AMPFDLLKKRLMSRLETMGIRILKTYE-----EEWSYIPVGGSLPNT-EQKNLAFGAAA  381 (529)
T ss_pred             EEEEeeeccCC----------CCCHHHHHHHHHHHHHhCCCCcceEEE-----EEeeeecCCCCCccc-CCCeeEeehhh
Confidence            55222 21111          012333444333222211000111111     1111111 1233433 68999999999


Q ss_pred             ccCCCCCcchhhhhHHHHHHHHHHHHhhcc-----------ccHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhc
Q 014324          319 HPTTPHGLRSTNMSILDAMVLGKSLEKWGV-----------EGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQG  382 (426)
Q Consensus       319 h~~~P~~G~G~~~ai~Da~~La~~L~~~~~-----------~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~  382 (426)
                      +.++|.+|.|+..++.+|..+|+.+++..+           +.....++.|++.+.+...+....-.....++..
T Consensus       382 G~vhPsTGy~v~~~l~~A~~~A~~ia~~l~~~~~~~~~~~~~~~~~~l~~~~~lw~~e~~r~~~~~~~g~~~l~~  456 (529)
T PLN02697        382 SMVHPATGYSVVRSLSEAPKYASVIARILKNVSSGGKLGTSNSSNISMQAWNTLWPQERKRQRAFFLFGLALILQ  456 (529)
T ss_pred             cCCCCchhhhHHHHHHhHHHHHHHHHHHhhCCccccccccccchHHHHHHHHHhChHHHHHHHHHHHHHHHHHHC
Confidence            999999999999999999999999988632           1346889999998887666555544444444443

>PLN02463 lycopene beta cyclase

Probab=99.91  E-value=2.3e-22  Score=194.29  Aligned_cols=295  Identities=16%  Similarity=0.112  Sum_probs=161.5

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccc
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQN   84 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~   84 (426)
                      ..+||+||||||||+++|+.|+++|++|+|+|+.+....  +..++  +   ..+.++.+++  .+.+... .+..  ..
T Consensus        27 ~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~--p~~~g--~---w~~~l~~lgl--~~~l~~~-w~~~--~v   94 (447)
T PLN02463         27 RVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIW--PNNYG--V---WVDEFEALGL--LDCLDTT-WPGA--VV   94 (447)
T ss_pred             cCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchh--ccccc--h---HHHHHHHCCc--HHHHHhh-CCCc--EE
Confidence            458999999999999999999999999999999765322  11111  1   1234555555  3333221 1100  00


Q ss_pred             cccccccccccccccCCCcchhccHHHHHHHHHhcCCC-Ce-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecE
Q 014324           85 QATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPP-EI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNL  162 (426)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~-~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~  162 (426)
                      ...++..      .....++..++|..|.+.|.+.+.+ |+ ++ ..+|.+++..++  .+.|+   +++|++  ++||+
T Consensus        95 ~~~~~~~------~~~~~~y~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~--~~~V~---~~dG~~--i~A~l  160 (447)
T PLN02463         95 YIDDGKK------KDLDRPYGRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEES--KSLVV---CDDGVK--IQASL  160 (447)
T ss_pred             EEeCCCC------ccccCcceeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcCC--eEEEE---ECCCCE--EEcCE
Confidence            1111110      0112345568999999999887764 67 54 578999886433  45555   567764  89999


Q ss_pred             EEeccCCchhhhhhhcCCCcccccceEEEEEE-eeCC--CCCchHHHhhhhcccCCC--Cc--eeeEec-CCCceEEEEE
Q 014324          163 LVAADGCLSSIRQSFLSDFKLRYSGYCAWRGV-LDFS--GIEDSEIIKGMRRVYPDL--GK--CLYFDL-ASGTHSVFYE  234 (426)
Q Consensus       163 vI~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~--~~--~~~~~~-~~~~~~~~~~  234 (426)
                      ||+|||.+|++++.    ..+...++..+.++ ++.+  +.+.+...  + .++...  +.  .....- .-..+.+.+|
T Consensus       161 VI~AdG~~s~l~~~----~~~~~~g~Q~a~Gi~~ev~~~p~d~~~~v--l-MD~r~~~~~~~~~~~~~~~~~p~FlY~~P  233 (447)
T PLN02463        161 VLDATGFSRCLVQY----DKPFNPGYQVAYGILAEVDSHPFDLDKML--F-MDWRDSHLGNNPELRARNSKLPTFLYAMP  233 (447)
T ss_pred             EEECcCCCcCccCC----CCCCCccceeeeeEEeecCCCCcccccch--h-hhcChhhccccchhhhccCCCCceEEEEe
Confidence            99999999998753    12223344333333 3332  11111100  0 011100  00  000000 0023667788


Q ss_pred             ecCCeeeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcceEeeeec-cCCCCccccccEEE
Q 014324          235 LLNKRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYD-CDPLKQIFWSNVVL  313 (426)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~rv~L  313 (426)
                      .+++++.+-.......+         ..+.+.+++.+....+.+.-...++.     ...+...+ ..+++ ...+|+++
T Consensus       234 ~~~~~~~vEeT~l~s~~---------~~~~~~lk~~L~~~l~~~Gi~~~~i~-----~~E~~~IPmg~~~~-~~~~~~~~  298 (447)
T PLN02463        234 FSSNRIFLEETSLVARP---------GLPMDDIQERMVARLRHLGIKVKSVE-----EDEKCVIPMGGPLP-VIPQRVLG  298 (447)
T ss_pred             cCCCeEEEEeeeeecCC---------CCCHHHHHHHHHHHHHHCCCCcceee-----eeeeeEeeCCCCCC-CCCCCEEE
Confidence            87776443322110000         11333334333322221110111111     01111111 12222 23589999


Q ss_pred             eccccccCCCCCcchhhhhHHHHHHHHHHHHhhc
Q 014324          314 IGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWG  347 (426)
Q Consensus       314 vGDAAh~~~P~~G~G~~~ai~Da~~La~~L~~~~  347 (426)
                      +||||..++|.+|.|+..++..|..+|+.+.+..
T Consensus       299 ~G~aag~v~p~tG~~i~~~~~~~~~~a~~~~~~~  332 (447)
T PLN02463        299 IGGTAGMVHPSTGYMVARTLAAAPIVADAIVEYL  332 (447)
T ss_pred             ecchhcCcCCCccccHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998763

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=99.90  E-value=1.9e-22  Score=196.12  Aligned_cols=320  Identities=16%  Similarity=0.103  Sum_probs=181.0

Q ss_pred             cEEEEcCChHHHHHHHHHHHcC---CcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceee--c
Q 014324            8 KAVIVGGSIAGISCAHALLRAG---WDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTI--D   82 (426)
Q Consensus         8 ~V~IvGaG~aGl~~A~~L~~~G---~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~   82 (426)
                      ||+|||||+||.++|..|++.+   ++|+|+|+...+.    .+.|....|....+++.+|+...+.+.+.....+.  .
T Consensus         1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~~~----~~vGe~~~p~~~~~~~~lgi~e~~~~~~~~~~~k~g~~   76 (454)
T PF04820_consen    1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDIPR----IGVGESTLPSLRPFLRRLGIDEADFMRACDATFKLGIR   76 (454)
T ss_dssp             EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS-------SSEEE--THHHHCHHHHT--HHHHCHHCT-EEESEEE
T ss_pred             CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCC----CCccccchHHHHHHHHHcCCChHHHHHHhCCeEeccEE
Confidence            7999999999999999999998   8999999999874    56778899999999999998522235555433221  1


Q ss_pred             ccccc-ccc----cccc----------------------------------------ccccc-C----CCcchhccHHHH
Q 014324           83 QNQAT-DNA----KVTR----------------------------------------TLARD-D----NFNFRAAHWADL  112 (426)
Q Consensus        83 ~~~~~-~~~----~~~~----------------------------------------~~~~~-~----~~~~~~~~r~~l  112 (426)
                      +..+. .+.    .++.                                        ..... .    ....+.++|..+
T Consensus        77 f~~w~~~~~~~~~~f~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ayhlDR~~f  156 (454)
T PF04820_consen   77 FVNWGERGESYFHPFGSYGPPIDGVDFHHYWLRLRAAGFDGPFSDFSLSAALAKQGRFAPPPEDFLSPFNYAYHLDRAKF  156 (454)
T ss_dssp             EESSSSCCSEEEEESS---TEETTEEHHHHHHHHHHTTCCSHHHHHHHCHHHHHHTTBTSB-TTSTBTSS-EEEEEHHHH
T ss_pred             eeecCCCCCceEeeccccCCCCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCCCCcccccCCCCeeEEEeHHHH
Confidence            11111 000    0000                                        00000 0    112256789999


Q ss_pred             HHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCchhhhhhhcCCCcccccc-e-
Q 014324          113 HGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSIRQSFLSDFKLRYSG-Y-  188 (426)
Q Consensus       113 ~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~vR~~l~~~~~~~~~~-~-  188 (426)
                      .++|.+.+. .|+ ++.+ +|+++..++++....|+   .++|++  ++||++|+|+|..|.+.+..+...-..... . 
T Consensus       157 d~~L~~~A~~~Gv~~~~g-~V~~v~~~~~g~i~~v~---~~~g~~--i~ad~~IDASG~~s~L~~~~L~~~~~~~~~~L~  230 (454)
T PF04820_consen  157 DQFLRRHAEERGVEVIEG-TVVDVELDEDGRITAVR---LDDGRT--IEADFFIDASGRRSLLARKALKVGFRDWSDWLP  230 (454)
T ss_dssp             HHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEE---ETTSEE--EEESEEEE-SGGG-CCCCCCT-EEEEEETTTCE
T ss_pred             HHHHHHHHhcCCCEEEeC-EEEEEEEcCCCCEEEEE---ECCCCE--EEEeEEEECCCccchhhHhhhcCCCcccccccc
Confidence            999999765 588 6665 58888876654444565   567765  899999999999999887742111111111 1 


Q ss_pred             --EEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEEEecCCeeeEEEEEecCCCCcCCCcceeccCHHH
Q 014324          189 --CAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELLNKRLNWVWYINQPEPIMKGNSVTMRVSNDM  266 (426)
Q Consensus       189 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (426)
                        ..+...++...              +. .........+.++.|.+|++++..+ .+.+.....          .+.+.
T Consensus       231 ~d~av~~~~~~~~--------------~~-~~~T~~~a~~~GW~W~IPL~~~~~~-G~V~s~~~~----------s~~~A  284 (454)
T PF04820_consen  231 NDRAVAVQVPNED--------------PP-EPYTRSTAFEAGWIWYIPLQNRRGS-GYVYSSDFI----------SDDEA  284 (454)
T ss_dssp             EEEEEEEEEE-SS--------------CT-TSSEEEEEESSEEEEEEEESSEEEE-EEEEETTTS----------HHHHH
T ss_pred             ccEEEEEecCcCC--------------CC-CCceeEEecCCceEEEccCCCcceE-EEEeccccC----------CHHHH
Confidence              11111122211              00 1112234457889999999998766 444432211          11222


Q ss_pred             HHHHHHHHhhcccHHHHHHhhhcCcceEeeeeccCCCCccccccEEEeccccccCCCCCcchhhhhHHHHHHHHHHHHhh
Q 014324          267 IKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDPLKQIFWSNVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKW  346 (426)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~rv~LvGDAAh~~~P~~G~G~~~ai~Da~~La~~L~~~  346 (426)
                      ..++...        +........  ...... .....+...+|+++|||||++++|+.++|+.+++..+..|+..|...
T Consensus       285 ~~~l~~~--------l~~~~~~~~--~~i~~~-~g~~~~~~~~n~vavGdAAgFiDPL~StGI~la~~aa~~l~~~l~~~  353 (454)
T PF04820_consen  285 EAELLAY--------LGGSPEAEP--RHIRFR-SGRRKQFWGKNCVAVGDAAGFIDPLESTGIHLALSAAEALAEALPDD  353 (454)
T ss_dssp             HHHHHHH--------HTCHCTTSC--EEEE-S--EEESSSEETTEEE-CCCTEE--GGGSHHHHHHHHHHHHHHHTHHCT
T ss_pred             HHHHHHh--------cchhhhcch--hhhccc-ccchhhcccCCEEEEcchhhccCccccccHHHHHHHHHHHHHhcccC
Confidence            2222221        111111111  111110 11123345689999999999999999999999999999999998765


Q ss_pred             ccccHHHHHHHHHHhhhhhHHHHHHHHHHh
Q 014324          347 GVEGLLSALEEYQTVRLPVTSKQVLHSRRL  376 (426)
Q Consensus       347 ~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~  376 (426)
                      .  ..+.+++.|++......+.+.+.-...
T Consensus       354 ~--~~~~~~~~Yn~~~~~~~~~~~~fi~~h  381 (454)
T PF04820_consen  354 D--FSPAALDRYNRRMRREYERIRDFISLH  381 (454)
T ss_dssp             T--CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             C--CCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3  337789999999888887665554443

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=99.90  E-value=4.9e-22  Score=188.88  Aligned_cols=305  Identities=13%  Similarity=0.040  Sum_probs=159.8

Q ss_pred             cEEEEcCChHHHHHHHHHHHc--CCcEEEEcccCCCCCCCCCc-ceeccChhHHHHHHHHhcCCchhhhccCcceeeccc
Q 014324            8 KAVIVGGSIAGISCAHALLRA--GWDVVVLEKAGGPPTGSPTG-AGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQN   84 (426)
Q Consensus         8 ~V~IvGaG~aGl~~A~~L~~~--G~~v~v~E~~~~~~~~~~~~-~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~   84 (426)
                      ||+||||||||+++|+.|++.  |++|+|+|+.+........+ +...+.+.....++.+        ....        
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~--------v~~~--------   64 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADL--------VQTD--------   64 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhh--------heEe--------
Confidence            799999999999999999987  99999999987654321111 0111111111111110        0000        


Q ss_pred             cccccccccccccccCCCcchhccHHHHHHHHHhcCCCCeeEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEE
Q 014324           85 QATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEIFLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLV  164 (426)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI  164 (426)
                       +.+..............++..+++.+|.+.+.+.+..+ ++++++|+++.  ++  .|++     .+|++  ++||+||
T Consensus        65 -W~~~~v~~~~~~~~l~~~Y~~I~r~~f~~~l~~~l~~~-i~~~~~V~~v~--~~--~v~l-----~dg~~--~~A~~VI  131 (370)
T TIGR01789        65 -WPGYEVRFPKYRRKLKTAYRSMTSTRFHEGLLQAFPEG-VILGRKAVGLD--AD--GVDL-----APGTR--INARSVI  131 (370)
T ss_pred             -CCCCEEECcchhhhcCCCceEEEHHHHHHHHHHhhccc-EEecCEEEEEe--CC--EEEE-----CCCCE--EEeeEEE
Confidence             00000000001111225677899999999998887656 67788999883  33  3543     46765  8999999


Q ss_pred             eccCCchhhhhhhcCCCcccccceEEEEEEee-CCCCCchHHHhhhhcccCCCCceeeEecC-CCceEEE--EEecCCee
Q 014324          165 AADGCLSSIRQSFLSDFKLRYSGYCAWRGVLD-FSGIEDSEIIKGMRRVYPDLGKCLYFDLA-SGTHSVF--YELLNKRL  240 (426)
Q Consensus       165 ~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~  240 (426)
                      +|||.+|+-..         +.++..+.|+.- .... .++....          .+-+... .+++.++  .|+.+++.
T Consensus       132 ~A~G~~s~~~~---------~~~~Q~f~G~~~r~~~p-~~~~~~~----------lMD~~~~q~~g~~F~Y~lP~~~~~~  191 (370)
T TIGR01789       132 DCRGFKPSAHL---------KGGFQVFLGREMRLQEP-HGLENPI----------IMDATVDQLAGYRFVYVLPLGSHDL  191 (370)
T ss_pred             ECCCCCCCccc---------cceeeEEEEEEEEEcCC-CCCCccE----------EEeeeccCCCCceEEEECcCCCCeE
Confidence            99999975211         123333333321 1111 1100000          0111111 2222233  45556554


Q ss_pred             eEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcceEeeeeccCC-CCccc-cccEEEecccc
Q 014324          241 NWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDP-LKQIF-WSNVVLIGDAA  318 (426)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~-~~rv~LvGDAA  318 (426)
                      .+-.....+.         ...+.+.+++.+..+.....-...+++....  ...++....+ ...|. .++++++||||
T Consensus       192 lvE~T~~s~~---------~~l~~~~l~~~l~~~~~~~g~~~~~i~~~e~--g~iPm~~~~~~~~~~~~~~~v~~iG~AA  260 (370)
T TIGR01789       192 LIEDTYYADD---------PLLDRNALSQRIDQYARANGWQNGTPVRHEQ--GVLPVLLGGDFSAYQDEVRIVAIAGLRA  260 (370)
T ss_pred             EEEEEeccCC---------CCCCHHHHHHHHHHHHHHhCCCceEEEEeee--eEEeeecCCCcccccccCCceeeeeccc
Confidence            4432211110         1123444443333221110001111111110  0111110011 11222 35699999999


Q ss_pred             ccCCCCCcchhhhhHHHHHHHHHHHHhhccccHHHHHHHHHHhhhhhHHHHHHHH
Q 014324          319 HPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTVRLPVTSKQVLHS  373 (426)
Q Consensus       319 h~~~P~~G~G~~~ai~Da~~La~~L~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~  373 (426)
                      |.++|.+|+|++.+++||..|++.+.... ....+++..|...|+++........
T Consensus       261 g~~~P~tGyg~~~a~~~a~~la~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  314 (370)
T TIGR01789       261 GLTHPTTGYSLPVAVENADALAAQPDLSS-EQLAAFIDSRARRHWSKTGYYRLLN  314 (370)
T ss_pred             ccccccccccHHHHHHHHHHHHhccCcCc-cchhhhhhHHHHHHHHHhHHHHHHH
Confidence            99999999999999999999999985121 2455667889988888776444333

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=99.83  E-value=1.9e-18  Score=165.15  Aligned_cols=282  Identities=18%  Similarity=0.169  Sum_probs=153.8

Q ss_pred             cEEEEcCChHHHHHHHHH--HHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324            8 KAVIVGGSIAGISCAHAL--LRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ   85 (426)
Q Consensus         8 ~V~IvGaG~aGl~~A~~L--~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   85 (426)
                      |||||||||||+++|+.|  ++.|.+|+|+|+++.........+++  .......++.+..        .... .. ...
T Consensus         1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~--~~~~~~~~~~~v~--------~~w~-~~-~v~   68 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCF--WEKDLGPLDSLVS--------HRWS-GW-RVY   68 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCccccc--ccccccchHHHHh--------eecC-ce-EEE
Confidence            899999999999999999  78899999999998863222222222  1111111221111        1100 00 001


Q ss_pred             ccccccccccccccCCCcchhccHHHHHHHHHhcCCC-CeeEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEE
Q 014324           86 ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPP-EIFLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLV  164 (426)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~-~~i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI  164 (426)
                      ..++.   ...   ..+++..+++..|.+.|.+.+.. +++..+++|.+++...+  .+.++   +.+|++  ++|++||
T Consensus        69 ~~~~~---~~~---~~~~Y~~i~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~~~~--~~~v~---~~~g~~--i~a~~Vv  135 (374)
T PF05834_consen   69 FPDGS---RIL---IDYPYCMIDRADFYEFLLERAAAGGVIRLNARVTSIEETGD--GVLVV---LADGRT--IRARVVV  135 (374)
T ss_pred             eCCCc---eEE---cccceEEEEHHHHHHHHHHHhhhCCeEEEccEEEEEEecCc--eEEEE---ECCCCE--EEeeEEE
Confidence            11111   001   11567789999999999998875 45888999999985443  44444   677875  8999999


Q ss_pred             eccCCchhhhhhhcCCCcccccceEEEEEE-eeCCCCCchHHHhhhhcccCCCCceeeEec----CCCceEEEEEecCCe
Q 014324          165 AADGCLSSIRQSFLSDFKLRYSGYCAWRGV-LDFSGIEDSEIIKGMRRVYPDLGKCLYFDL----ASGTHSVFYELLNKR  239 (426)
Q Consensus       165 ~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~  239 (426)
                      +|+|..|...+..         ++..+.|. +..+....+          +.....+-+..    +...+++++|...++
T Consensus       136 Da~g~~~~~~~~~---------~~Q~f~G~~v~~~~~~f~----------~~~~~lMD~r~~~~~~~~~F~Y~lP~~~~~  196 (374)
T PF05834_consen  136 DARGPSSPKARPL---------GLQHFYGWEVETDEPVFD----------PDTATLMDFRVPQSADGPSFLYVLPFSEDR  196 (374)
T ss_pred             ECCCccccccccc---------ccceeEEEEEeccCCCCC----------CCceEEEEecccCCCCCceEEEEEEcCCCe
Confidence            9999776622211         11222222 222211000          00001111112    223455566777766


Q ss_pred             eeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcceEeeeeccCCCCccccccEEEeccccc
Q 014324          240 LNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDPLKQIFWSNVVLIGDAAH  319 (426)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~rv~LvGDAAh  319 (426)
                      ..+-..+-.+.+         ..+.+.+++.+....+...-...++++....  ..++. ..+..+..+++++.+|+||+
T Consensus       197 alvE~T~fs~~~---------~~~~~~~~~~l~~~l~~~g~~~~~i~~~E~G--~IPm~-~~~~~~~~~~~v~~iG~agG  264 (374)
T PF05834_consen  197 ALVEETSFSPRP---------ALPEEELKARLRRYLERLGIDDYEILEEERG--VIPMT-TGGFPPRFGQRVIRIGTAGG  264 (374)
T ss_pred             EEEEEEEEcCCC---------CCCHHHHHHHHHHHHHHcCCCceeEEEeecc--eeecc-cCCCccccCCCeeeEEcccc
Confidence            554333222211         0133444443332222111111111111100  01110 11222334578999999999


Q ss_pred             cCCCCCcchhhhhHHHHHHHHHHHHh
Q 014324          320 PTTPHGLRSTNMSILDAMVLGKSLEK  345 (426)
Q Consensus       320 ~~~P~~G~G~~~ai~Da~~La~~L~~  345 (426)
                      .++|.+|.++..+.+.|..+|+.|.+
T Consensus       265 ~v~PsTGYs~~~~~~~a~~ia~~l~~  290 (374)
T PF05834_consen  265 MVKPSTGYSFARIQRQADAIADALAK  290 (374)
T ss_pred             CCCCcccHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999986

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>PF08491 SE: Squalene epoxidase; InterPro: IPR013698 This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria

Probab=99.82  E-value=2e-18  Score=151.91  Aligned_cols=235  Identities=17%  Similarity=0.158  Sum_probs=159.9

Q ss_pred             ecEEEeccCCchhhhhhhcCCCcccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEEEecCCe
Q 014324          160 GNLLVAADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELLNKR  239 (426)
Q Consensus       160 ~d~vI~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (426)
                      |+++|.|||..|++|+.+.   .........+.|..-...          ....|.++   ++.+++..++++|++..+.
T Consensus         2 A~LtivaDG~~S~fRk~l~---~~~~~v~S~fvGl~l~~~----------~lp~~~~g---hvil~~~~pil~YqI~~~e   65 (276)
T PF08491_consen    2 APLTIVADGCFSKFRKELS---DNKPQVRSYFVGLILKDA----------PLPKPNHG---HVILGKPGPILLYQISSNE   65 (276)
T ss_pred             CCEEEEecCCchHHHHhhc---CCCCceeeeEEEEEEcCC----------CCCCCCce---EEEEcCCCcEEEEEcCCCc
Confidence            6899999999999999985   223333444555443221          11223333   4567788999999999999


Q ss_pred             eeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcC--cceEeeeeccCCCCccccccEEEeccc
Q 014324          240 LNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETK--EPFINAMYDCDPLKQIFWSNVVLIGDA  317 (426)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~p~~~~~~~rv~LvGDA  317 (426)
                      +++.+-++.+..       ....+.+..+.+.+...+...+.+++.+..+-  ..++.......|.......+++++|||
T Consensus        66 tR~Lvdvp~~k~-------P~~~~g~l~~yl~~~v~P~LP~~lr~~f~~al~~~rirsMPn~~lp~~~~~~~G~vllGDA  138 (276)
T PF08491_consen   66 TRVLVDVPGPKL-------PSVSNGELKEYLREVVAPQLPEELRPSFEKALEDGRIRSMPNSFLPASPNWKPGVVLLGDA  138 (276)
T ss_pred             eEEEEEeCCCcc-------CCccchHHHHHHHHHHHhhchHHHHHHHHHHhccCCcceecccccCCCCCCCCCEEEEehh
Confidence            888776654311       11112233344444444555555555433221  122222222333333444889999999


Q ss_pred             cccCCCCCcchhhhhHHHHHHHHHHHHhhc----cccHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhcCCCCCCCCCCC
Q 014324          318 AHPTTPHGLRSTNMSILDAMVLGKSLEKWG----VEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQGLALPDREPFNT  393 (426)
Q Consensus       318 Ah~~~P~~G~G~~~ai~Da~~La~~L~~~~----~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (426)
                      +++.+|++|+||+.|+.|+..|++.|....    .+...+++++|..+|++....+.-.+..+..+|...+...      
T Consensus       139 ~nmrHPLTGgGMTVAl~Dv~lL~~lL~~~~dl~d~~~v~~~l~~f~~~Rk~~~s~iNiLA~aLY~lF~a~~~~l------  212 (276)
T PF08491_consen  139 ANMRHPLTGGGMTVALNDVVLLRDLLSPIPDLSDTKAVLEALKKFHWKRKPLSSVINILAQALYSLFAADDDYL------  212 (276)
T ss_pred             hcCcCCccccchhhHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCHHH------
Confidence            999999999999999999999999998762    1235689999999999999999999999999998753211      


Q ss_pred             CCCChhhhHHHhhccCCcccCCCcccccccc
Q 014324          394 KTASPQDCQELQQKTMPFFADLPSLVDSTLC  424 (426)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (426)
                       ......|.++++.+..+++|.-+++-.+..
T Consensus       213 -~~Lr~gcf~Yf~~GG~~~~gpv~LLsgl~p  242 (276)
T PF08491_consen  213 -KALRQGCFKYFQLGGECVSGPVALLSGLNP  242 (276)
T ss_pred             -HHHHHHHHHHHHcCCCCCcchHHHhccCCC
Confidence             233467999999999999998888766543

SE was first cloned from Saccharomyces cerevisiae (Baker's yeast) where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway []. Putative transmembrane regions are found to the protein's C terminus. ; GO: 0004506 squalene monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process, 0016021 integral to membrane

>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]

Probab=99.75  E-value=1.6e-16  Score=143.98  Aligned_cols=381  Identities=15%  Similarity=0.139  Sum_probs=213.3

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHc------CCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcc
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRA------GWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVP   78 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~------G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~   78 (426)
                      +.+||+|||||||||++|+.|++.      .++|+|+||...++.+. .+ |-.|.|.+   |+++.++..+.=.....+
T Consensus        75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~Gght-lS-Gaviep~a---ldEL~P~wke~~apl~t~  149 (621)
T KOG2415|consen   75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHT-LS-GAVIEPGA---LDELLPDWKEDGAPLNTP  149 (621)
T ss_pred             ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCce-ec-ceeeccch---hhhhCcchhhcCCccccc
Confidence            458999999999999999998763      57999999999987643 22 33467764   444444212211111222


Q ss_pred             eeeccccccccc-ccc-ccccccCCCcchhccHHHHHHHHHhcCCC-Ce-eEeeeeEEEEEEecCCceEEEEEEec---c
Q 014324           79 LTIDQNQATDNA-KVT-RTLARDDNFNFRAAHWADLHGLLYNALPP-EI-FLRGHQYLSFCISEVKTTVTVKAKVL---Q  151 (426)
Q Consensus        79 ~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~r~~l~~~L~~~~~~-~~-i~~~~~v~~~~~~~~~~~v~v~~~~~---~  151 (426)
                      ...+...+..++ .+. ..+......+.+.++-..+.++|-+.+++ |+ |+-+..+.++.+++++....+-.++.   +
T Consensus       150 vT~d~~~fLt~~~~i~vPv~~pm~NhGNYvv~L~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k  229 (621)
T KOG2415|consen  150 VTSDKFKFLTGKGRISVPVPSPMDNHGNYVVSLGQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISK  229 (621)
T ss_pred             ccccceeeeccCceeecCCCcccccCCcEEEEHHHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeeccccccC
Confidence            222222222222 111 11112223345677889999999998876 88 99999999998877765444432221   2


Q ss_pred             CCceE-------EEeecEEEeccCCchhhhhhhcCCCccc----ccce-EEEEEEeeCCCCCchHHHhhhhcccCCCCce
Q 014324          152 TDEVI-------EIKGNLLVAADGCLSSIRQSFLSDFKLR----YSGY-CAWRGVLDFSGIEDSEIIKGMRRVYPDLGKC  219 (426)
Q Consensus       152 ~g~~~-------~~~~d~vI~AdG~~S~vR~~l~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (426)
                      +|...       ++.|+..|-|.|++..+.+++......+    ...| .....++.+++....+........+|-    
T Consensus       230 ~G~pKd~FerGme~hak~TifAEGc~G~Lskqi~kkf~Lr~n~e~qtYglGlKEvWei~~~~~~pG~v~HT~GwPl----  305 (621)
T KOG2415|consen  230 DGAPKDTFERGMEFHAKVTIFAEGCHGSLSKQIIKKFDLRENCEPQTYGLGLKEVWEIDPENHNPGEVAHTLGWPL----  305 (621)
T ss_pred             CCCccccccccceecceeEEEeccccchhHHHHHHHhCcccCCCcceeccccceeEecChhhcCCcceeeeccCcc----
Confidence            33221       4889999999999999888876444332    1111 122233333332221111111111121    


Q ss_pred             eeEecCCCceEEEEEecCCeeeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcceEe--ee
Q 014324          220 LYFDLASGTHSVFYELLNKRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFIN--AM  297 (426)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  297 (426)
                         ....-+..++|-+.+..+.+.+.+-.+..+      +...+...+.++.      -+|.+.+.++........  .+
T Consensus       306 ---~~~tYGGsFlYh~~d~~VavGlVVgLdY~N------P~lsP~~EFQk~K------~hP~i~~vleGgk~i~YgARaL  370 (621)
T KOG2415|consen  306 ---DNDTYGGSFLYHFNDPLVAVGLVVGLDYKN------PYLSPYKEFQKMK------HHPSISKVLEGGKRIAYGARAL  370 (621)
T ss_pred             ---cCCccCceeEEEcCCCeEEEEEEEEecCCC------CCCCHHHHHHHhh------cCcchhhhhcCcceeeehhhhh
Confidence               111223445666677777777766655432      1122333344332      256777777643321110  11


Q ss_pred             ec--cCCCCccccccEEEeccccccCCCCCcchhhhhHHHHHHHHHHHHhhc-ccc-H-HHH--HHHHHHhhhhhH-HHH
Q 014324          298 YD--CDPLKQIFWSNVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWG-VEG-L-LSA--LEEYQTVRLPVT-SKQ  369 (426)
Q Consensus       298 ~~--~~p~~~~~~~rv~LvGDAAh~~~P~~G~G~~~ai~Da~~La~~L~~~~-~~~-~-~~~--L~~Y~~~R~~~~-~~~  369 (426)
                      ..  .+.+|.....+=+|||-+|++++----.|..+||.++...|+.+.+.. +.+ . ...  +..|++.-+.-. .+-
T Consensus       371 NEGGfQsiPkl~FPGG~liGcSaGFlNVpKIKGTHtAMKSGmlAAesif~ai~~~~~~k~~~~~~~~Ye~nlkds~V~Ke  450 (621)
T KOG2415|consen  371 NEGGFQSIPKLVFPGGALIGCSAGFLNVPKIKGTHTAMKSGMLAAESIFEAIKGLPQSKMAGLDPTTYEENLKDSYVWKE  450 (621)
T ss_pred             ccCCcccCcccccCCceEeecccccccccccccchhhhhcchhHHHHHHHHHhcCccccccccChhhHHHhhhhhHHHHH
Confidence            11  334566777888999999999999999999999999999999987763 111 1 111  458887766633 333


Q ss_pred             HHHHHHhhhhhhcCCCCCCCCCCCCCCChhhhHHHhhccCCcccC
Q 014324          370 VLHSRRLGRIKQGLALPDREPFNTKTASPQDCQELQQKTMPFFAD  414 (426)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (426)
                      +-..+....-|++.     -..-..+.-...+.-++....+|+..
T Consensus       451 LysvRNirPsf~~~-----lG~ygGmiySgi~~~~lkG~~PwTLk  490 (621)
T KOG2415|consen  451 LYSVRNIRPSFHGK-----LGLYGGMIYSGIFSYVLKGKVPWTLK  490 (621)
T ss_pred             HHHhhccCcccccc-----cccccchhhhhhHHHhhcCccceeec
Confidence            33334444444432     01111123233444555555556544

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=99.60  E-value=1.1e-14  Score=131.01  Aligned_cols=143  Identities=18%  Similarity=0.176  Sum_probs=94.5

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCccee-----ccChhHHHHHHHHhcCCchhhhccCcce
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGL-----GLDRPAQRIIQSWLNGRPHLLHLATVPL   79 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~-----~l~~~~~~~l~~~~~~~~~~~~~~~~~~   79 (426)
                      ..+||+||||||||+++|+.|++.|++|+|+||...++... .+.+.     .+.+...++|+++++.           .
T Consensus        24 ~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~-~~gg~~~~~~~v~~~~~~~l~~~gv~-----------~   91 (257)
T PRK04176         24 LEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGM-WGGGMLFNKIVVQEEADEILDEFGIR-----------Y   91 (257)
T ss_pred             ccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCcc-ccCccccccccchHHHHHHHHHCCCC-----------c
Confidence            46899999999999999999999999999999998875321 22221     2233334444444431           1


Q ss_pred             eeccccccccccccccccccCCCcchhccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEec---cC--
Q 014324           80 TIDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVL---QT--  152 (426)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~---~~--  152 (426)
                      ..    .              ....+.+++..+.+.|.+.+. .|+ ++.++++.++..++++....+.....   .+  
T Consensus        92 ~~----~--------------~~g~~~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~  153 (257)
T PRK04176         92 KE----V--------------EDGLYVADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGL  153 (257)
T ss_pred             ee----e--------------cCcceeccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCC
Confidence            00    0              011234566777777777654 588 99999999998654422222222111   11  


Q ss_pred             -CceEEEeecEEEeccCCchhhhhhh
Q 014324          153 -DEVIEIKGNLLVAADGCLSSIRQSF  177 (426)
Q Consensus       153 -g~~~~~~~d~vI~AdG~~S~vR~~l  177 (426)
                       .+..+++|++||.|+|++|.+.+.+
T Consensus       154 ~~~~~~i~Ak~VI~ATG~~a~v~~~l  179 (257)
T PRK04176        154 HVDPLTIEAKAVVDATGHDAEVVSVL  179 (257)
T ss_pred             CCCcEEEEcCEEEEEeCCCcHHHHHH
Confidence             2345699999999999999999887

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=99.55  E-value=2.9e-14  Score=130.48  Aligned_cols=161  Identities=17%  Similarity=0.172  Sum_probs=96.9

Q ss_pred             CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCC--Cc--ceeccChhHHHHHHHHhcCCchhhhccCcce
Q 014324            4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSP--TG--AGLGLDRPAQRIIQSWLNGRPHLLHLATVPL   79 (426)
Q Consensus         4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~--~~--~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~   79 (426)
                      |+.+||+|||||||||+||..++++|.+|+|||+.+.++..-.  -|  +.+.......+++.+.+-+ .+.++..-..+
T Consensus         1 ~~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~-~~fl~sal~~f   79 (408)
T COG2081           1 MERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGN-GHFLKSALARF   79 (408)
T ss_pred             CCcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCc-chHHHHHHHhC
Confidence            4568999999999999999999999999999999999875221  11  2333333344555555421 12222111111


Q ss_pred             ee-ccccccccccccccccccCCCcchh-ccHHHHHHHHHhcCCC-Ce-eEeeeeEEEEEEecCCceEEEEEEeccCCce
Q 014324           80 TI-DQNQATDNAKVTRTLARDDNFNFRA-AHWADLHGLLYNALPP-EI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEV  155 (426)
Q Consensus        80 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~r~~l~~~L~~~~~~-~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~  155 (426)
                      .. +.+.+..+..+.... ...+.-|.. ..-..+.++|..++++ |+ ++.+++|.+++.++  ....+.   ..+|++
T Consensus        80 t~~d~i~~~e~~Gi~~~e-~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~--~~f~l~---t~~g~~  153 (408)
T COG2081          80 TPEDFIDWVEGLGIALKE-EDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDD--SGFRLD---TSSGET  153 (408)
T ss_pred             CHHHHHHHHHhcCCeeEE-ccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecC--ceEEEE---cCCCCE
Confidence            00 011111111010000 011111111 3336677777777764 88 99999999999754  345554   677874


Q ss_pred             EEEeecEEEeccCCchhh
Q 014324          156 IEIKGNLLVAADGCLSSI  173 (426)
Q Consensus       156 ~~~~~d~vI~AdG~~S~v  173 (426)
                        ++||-||.|+|..|.-
T Consensus       154 --i~~d~lilAtGG~S~P  169 (408)
T COG2081         154 --VKCDSLILATGGKSWP  169 (408)
T ss_pred             --EEccEEEEecCCcCCC
Confidence              8999999999988843

>TIGR00292 thiazole biosynthesis enzyme

Probab=99.53  E-value=1.3e-13  Score=123.68  Aligned_cols=143  Identities=20%  Similarity=0.277  Sum_probs=92.5

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCccee-----ccChhHHHHHHHHhcCCchhhhccCcce
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGL-----GLDRPAQRIIQSWLNGRPHLLHLATVPL   79 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~-----~l~~~~~~~l~~~~~~~~~~~~~~~~~~   79 (426)
                      ..+||+|||||||||++|+.|+++|++|+|+||...++... .+.+.     .+.+...++++.+++           +.
T Consensus        20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~-~~gg~~~~~~~~~~~~~~~l~~~gi-----------~~   87 (254)
T TIGR00292        20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGS-WGGGMLFSKIVVEKPAHEILDEFGI-----------RY   87 (254)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccc-cCCCcceecccccchHHHHHHHCCC-----------Ce
Confidence            46899999999999999999999999999999999875422 22221     122223333433332           10


Q ss_pred             eeccccccccccccccccccCCCcchhccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEE-EEEEec---cCC
Q 014324           80 TIDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVT-VKAKVL---QTD  153 (426)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~-v~~~~~---~~g  153 (426)
                      .                  ....++...++..+.+.|.+.+. .|+ +++++++.++..+++...|. +.....   .+|
T Consensus        88 ~------------------~~~~g~~~~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g  149 (254)
T TIGR00292        88 E------------------DEGDGYVVADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAG  149 (254)
T ss_pred             e------------------eccCceEEeeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccC
Confidence            0                  00111223456677777776554 578 99999999998755421222 221100   011


Q ss_pred             ---ceEEEeecEEEeccCCchhhhhhh
Q 014324          154 ---EVIEIKGNLLVAADGCLSSIRQSF  177 (426)
Q Consensus       154 ---~~~~~~~d~vI~AdG~~S~vR~~l  177 (426)
                         +..+++|++||+|||+.|.+.+.+
T Consensus       150 ~~~d~~~i~Ak~VVdATG~~a~v~~~l  176 (254)
T TIGR00292       150 LHVDPLTQRSRVVVDATGHDAEIVAVC  176 (254)
T ss_pred             CCCCCEEEEcCEEEEeecCCchHHHHH
Confidence               345699999999999999988886

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=99.49  E-value=2.5e-13  Score=114.48  Aligned_cols=142  Identities=19%  Similarity=0.219  Sum_probs=85.6

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcce-----eccChhHHHHHHHHhcCCchhhhccCcce
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAG-----LGLDRPAQRIIQSWLNGRPHLLHLATVPL   79 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~-----~~l~~~~~~~l~~~~~~~~~~~~~~~~~~   79 (426)
                      ..+||+|||||||||++|+.|+++|++|+|||++..++... ++.|     +.+...+..+|+.+++...    +     
T Consensus        16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~-~~Gg~lf~~iVVq~~a~~iL~elgi~y~----~-----   85 (230)
T PF01946_consen   16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGM-WGGGMLFNKIVVQEEADEILDELGIPYE----E-----   85 (230)
T ss_dssp             TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTT-TS-CTT---EEEETTTHHHHHHHT---E----E-----
T ss_pred             ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccc-cccccccchhhhhhhHHHHHHhCCceeE----E-----
Confidence            35899999999999999999999999999999999987533 3333     3455567777777766200    0     


Q ss_pred             eeccccccccccccccccccCCCcchhccHHHHHHHH-HhcCCCCe-eEeeeeEEEEEEecCCceEE-EEEEec---cC-
Q 014324           80 TIDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLL-YNALPPEI-FLRGHQYLSFCISEVKTTVT-VKAKVL---QT-  152 (426)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L-~~~~~~~~-i~~~~~v~~~~~~~~~~~v~-v~~~~~---~~-  152 (426)
                            ..              ..++..+...+-..| ...+..|+ |+-.+.|.++...++ ..|. +..+..   .. 
T Consensus        86 ------~~--------------~g~~v~d~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~-~rV~GvViNWt~V~~~g  144 (230)
T PF01946_consen   86 ------YG--------------DGYYVADSVEFTSTLASKAIDAGAKIFNLTSVEDVIVRED-DRVAGVVINWTPVEMAG  144 (230)
T ss_dssp             -------S--------------SEEEES-HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECS-CEEEEEEEEEHHHHTT-
T ss_pred             ------eC--------------CeEEEEcHHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcC-CeEEEEEEEehHHhHhh
Confidence                  00              112223334444444 44667888 888999999887664 3443 211111   11 


Q ss_pred             --CceEEEeecEEEeccCCchhhhhhh
Q 014324          153 --DEVIEIKGNLLVAADGCLSSIRQSF  177 (426)
Q Consensus       153 --g~~~~~~~d~vI~AdG~~S~vR~~l  177 (426)
                        =.+.++++++||+|+|+-+.+-+.+
T Consensus       145 lHvDPl~i~ak~ViDaTGHda~v~~~~  171 (230)
T PF01946_consen  145 LHVDPLTIRAKVVIDATGHDAEVVRVL  171 (230)
T ss_dssp             -T-B-EEEEESEEEE---SSSSSTSHH
T ss_pred             cCCCcceEEEeEEEeCCCCchHHHHHH
Confidence              1345799999999999988766554

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=99.44  E-value=3e-12  Score=107.22  Aligned_cols=142  Identities=20%  Similarity=0.274  Sum_probs=91.9

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceec-----cChhHHHHHHHHhcCCchhhhccCccee
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLG-----LDRPAQRIIQSWLNGRPHLLHLATVPLT   80 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~-----l~~~~~~~l~~~~~~~~~~~~~~~~~~~   80 (426)
                      ..||+|||||||||+||+.|+++|.+|+||||+-.++.+. ++.|..     +...+.++|+.+++. .+          
T Consensus        30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~-w~GGmlf~~iVv~~~a~~iL~e~gI~-ye----------   97 (262)
T COG1635          30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGI-WGGGMLFNKIVVREEADEILDEFGIR-YE----------   97 (262)
T ss_pred             hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcc-cccccccceeeecchHHHHHHHhCCc-ce----------
Confidence            4699999999999999999999999999999999987644 444433     445666777776662 00          


Q ss_pred             eccccccccccccccccccCCCcchhccHHHHHHHH-HhcCCCCe-eEeeeeEEEEEEecCC--ceEEEEEEec-cCC--
Q 014324           81 IDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLL-YNALPPEI-FLRGHQYLSFCISEVK--TTVTVKAKVL-QTD--  153 (426)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L-~~~~~~~~-i~~~~~v~~~~~~~~~--~~v~v~~~~~-~~g--  153 (426)
                          ...+              +++..+-..+-..| ..++..|. |..++.|.++...++.  .+|.+..... ..+  
T Consensus        98 ----~~e~--------------g~~v~ds~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lh  159 (262)
T COG1635          98 ----EEED--------------GYYVADSAEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLH  159 (262)
T ss_pred             ----ecCC--------------ceEEecHHHHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccc
Confidence                0111              11122223333333 44566688 8889999998876553  1222211000 011  


Q ss_pred             -ceEEEeecEEEeccCCchhhhhhh
Q 014324          154 -EVIEIKGNLLVAADGCLSSIRQSF  177 (426)
Q Consensus       154 -~~~~~~~d~vI~AdG~~S~vR~~l  177 (426)
                       .+.++++++||+|+|+-..+-+.+
T Consensus       160 vDPl~i~a~~VvDaTGHda~v~~~~  184 (262)
T COG1635         160 VDPLTIRAKAVVDATGHDAEVVSFL  184 (262)
T ss_pred             cCcceeeEEEEEeCCCCchHHHHHH
Confidence             234589999999999988776665

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.34  E-value=1.2e-11  Score=118.71  Aligned_cols=144  Identities=15%  Similarity=0.096  Sum_probs=90.4

Q ss_pred             CCCCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHH----HHHHHHhcCCchhhhccCc
Q 014324            2 EKKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQ----RIIQSWLNGRPHLLHLATV   77 (426)
Q Consensus         2 ~~~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~----~~l~~~~~~~~~~~~~~~~   77 (426)
                      +.+...+|+|||||||||++|..|.++|++|+||||...++.      -+...+..-    .+.+++-.++..++.    
T Consensus         2 ~~~~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGG------lW~y~~~~~~~~ss~Y~~l~tn~pKe~~----   71 (448)
T KOG1399|consen    2 IMMMSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGG------LWKYTENVEVVHSSVYKSLRTNLPKEMM----   71 (448)
T ss_pred             CcCCCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccc------eEeecCcccccccchhhhhhccCChhhh----
Confidence            345668999999999999999999999999999999999652      233332211    111111111011100    


Q ss_pred             ceeeccccccccccccccccccCCCcchhccHHHHHHHHHhcCCC-Ce---eEeeeeEEEEEEecCCceEEEEEEeccCC
Q 014324           78 PLTIDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPP-EI---FLRGHQYLSFCISEVKTTVTVKAKVLQTD  153 (426)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~-~~---i~~~~~v~~~~~~~~~~~v~v~~~~~~~g  153 (426)
                             .+.      ... .....+-+.+++..+.++|.+.++. +.   |+++++++.+....+ +.|.|+.++...+
T Consensus        72 -------~~~------dfp-f~~~~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~-gkW~V~~~~~~~~  136 (448)
T KOG1399|consen   72 -------GYS------DFP-FPERDPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDK-GKWRVTTKDNGTQ  136 (448)
T ss_pred             -------cCC------CCC-CcccCcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccC-CceeEEEecCCcc
Confidence                   000      000 1111333446667889999887764 33   999999998886442 4666664433222


Q ss_pred             ceEEEeecEEEeccCCch
Q 014324          154 EVIEIKGNLLVAADGCLS  171 (426)
Q Consensus       154 ~~~~~~~d~vI~AdG~~S  171 (426)
                       ..+..+|.||.|+|.+.
T Consensus       137 -~~~~ifd~VvVctGh~~  153 (448)
T KOG1399|consen  137 -IEEEIFDAVVVCTGHYV  153 (448)
T ss_pred             -eeEEEeeEEEEcccCcC
Confidence             34578999999999994

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=99.33  E-value=3.2e-10  Score=112.80  Aligned_cols=41  Identities=24%  Similarity=0.345  Sum_probs=37.0

Q ss_pred             CCCCCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324            1 MEKKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP   41 (426)
Q Consensus         1 m~~~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   41 (426)
                      |+.++.+||+|||||++|+++|+.|+++|++|+|+||....
T Consensus         1 ~~~~~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~   41 (508)
T PRK12266          1 MTMMETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLA   41 (508)
T ss_pred             CCCCCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            55567799999999999999999999999999999998543

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=99.33  E-value=3e-12  Score=122.39  Aligned_cols=144  Identities=19%  Similarity=0.196  Sum_probs=69.8

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCC-CCc-ceeccCh-----------------hHHHHHHHHhcC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGS-PTG-AGLGLDR-----------------PAQRIIQSWLNG   67 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~-~~~-~~~~l~~-----------------~~~~~l~~~~~~   67 (426)
                      |||+|||||||||+||+.|++.|.+|+|+||.+.++..- -+| ..++++.                 .....++++...
T Consensus         1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~   80 (409)
T PF03486_consen    1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPE   80 (409)
T ss_dssp             -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HH
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHH
Confidence            799999999999999999999999999999999975310 011 1111111                 111122222110


Q ss_pred             C-chhhhccCcceeeccccccccccccccccccCCCcch-hccHHHHHHHHHhcCCC-Ce-eEeeeeEEEEEEecCCceE
Q 014324           68 R-PHLLHLATVPLTIDQNQATDNAKVTRTLARDDNFNFR-AAHWADLHGLLYNALPP-EI-FLRGHQYLSFCISEVKTTV  143 (426)
Q Consensus        68 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~r~~l~~~L~~~~~~-~~-i~~~~~v~~~~~~~~~~~v  143 (426)
                      . .+.+.+.+.+..                ....+..|. .-.-.++.+.|.+.+.+ ++ ++++++|.+++.+++ ..+
T Consensus        81 d~~~ff~~~Gv~~~----------------~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~-~~f  143 (409)
T PF03486_consen   81 DLIAFFEELGVPTK----------------IEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKED-GVF  143 (409)
T ss_dssp             HHHHHHHHTT--EE----------------E-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETT-EEE
T ss_pred             HHHHHHHhcCCeEE----------------EcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCC-cee
Confidence            0 001111111110                000111111 11235677777777664 88 999999999987544 335


Q ss_pred             EEEEEeccCCceEEEeecEEEeccCCchh
Q 014324          144 TVKAKVLQTDEVIEIKGNLLVAADGCLSS  172 (426)
Q Consensus       144 ~v~~~~~~~g~~~~~~~d~vI~AdG~~S~  172 (426)
                      .|.   .+++.  .+.||.||.|+|..|.
T Consensus       144 ~v~---~~~~~--~~~a~~vILAtGG~S~  167 (409)
T PF03486_consen  144 GVK---TKNGG--EYEADAVILATGGKSY  167 (409)
T ss_dssp             EEE---ETTTE--EEEESEEEE----SSS
T ss_pred             Eee---ccCcc--cccCCEEEEecCCCCc
Confidence            555   33444  3899999999998874

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=99.32  E-value=1.3e-11  Score=120.62  Aligned_cols=153  Identities=14%  Similarity=0.093  Sum_probs=84.2

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCC---------chhhhcc
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGR---------PHLLHLA   75 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~---------~~~~~~~   75 (426)
                      ...+|+|||||||||++|..|.+.|++|+||||....+      ..+...+..-.  +.++...         .+.+...
T Consensus         9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vG------G~W~~~~~~~~--d~~~~~~~~~~~~s~~Y~~L~tn   80 (461)
T PLN02172          9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVG------GLWVYTPKSES--DPLSLDPTRSIVHSSVYESLRTN   80 (461)
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCc------ceeecCCCcCC--CccccCCCCcccchhhhhhhhcc
Confidence            45799999999999999999999999999999999864      22333322100  0001100         0000000


Q ss_pred             CcceeeccccccccccccccccccCCCcchhccHHHHHHHHHhcCCC-Ce---eEeeeeEEEEEEecCCceEEEEEEecc
Q 014324           76 TVPLTIDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPP-EI---FLRGHQYLSFCISEVKTTVTVKAKVLQ  151 (426)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~-~~---i~~~~~v~~~~~~~~~~~v~v~~~~~~  151 (426)
                       .+..  ...+.+- .+...........-.-+.+..+.++|.+.+.. ++   |+++++|++++..+  ..++|+.++ .
T Consensus        81 -~p~~--~m~f~df-p~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~--~~w~V~~~~-~  153 (461)
T PLN02172         81 -LPRE--CMGYRDF-PFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVD--GKWRVQSKN-S  153 (461)
T ss_pred             -CCHh--hccCCCC-CCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecC--CeEEEEEEc-C
Confidence             0000  0000000 00000000000001123457788888876643 33   88999999998643  466666432 2


Q ss_pred             CCceEEEeecEEEeccCCchh
Q 014324          152 TDEVIEIKGNLLVAADGCLSS  172 (426)
Q Consensus       152 ~g~~~~~~~d~vI~AdG~~S~  172 (426)
                      ++...+..+|.||.|+|..+.
T Consensus       154 ~~~~~~~~~d~VIvAtG~~~~  174 (461)
T PLN02172        154 GGFSKDEIFDAVVVCNGHYTE  174 (461)
T ss_pred             CCceEEEEcCEEEEeccCCCC
Confidence            233335689999999998764

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.29  E-value=5e-10  Score=111.50  Aligned_cols=41  Identities=27%  Similarity=0.373  Sum_probs=37.4

Q ss_pred             CCCCCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324            1 MEKKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP   41 (426)
Q Consensus         1 m~~~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   41 (426)
                      ||.+.++||+|||||++|+++|+.|+++|++|+|+||....
T Consensus         1 ~~~~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~   41 (502)
T PRK13369          1 MAEPETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLA   41 (502)
T ss_pred             CCCCcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCC
Confidence            66667799999999999999999999999999999999654

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=99.26  E-value=1.3e-09  Score=105.04  Aligned_cols=35  Identities=29%  Similarity=0.386  Sum_probs=32.7

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP   41 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   41 (426)
                      +||+|||||++|+++|+.|+++|.+|+|+|+....
T Consensus         1 ~dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~~~   35 (380)
T TIGR01377         1 FDVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFDLP   35 (380)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCC
Confidence            59999999999999999999999999999997654

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=99.26  E-value=4.1e-11  Score=118.61  Aligned_cols=143  Identities=11%  Similarity=0.050  Sum_probs=83.3

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhcc-Ccceeecccc
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLA-TVPLTIDQNQ   85 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~   85 (426)
                      .+|+|||||+|||++|..|.+.|++++||||++.++      ..+.......     -|.   ..+.+. ......... 
T Consensus         2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iG------G~W~~~~~~~-----~g~---~~~y~sl~~n~sk~~~-   66 (531)
T PF00743_consen    2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIG------GLWRYTENPE-----DGR---SSVYDSLHTNTSKEMM-   66 (531)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSS------GGGCHSTTCC-----CSE---GGGSTT-B-SS-GGGS-
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCC------ccCeeCCcCC-----CCc---cccccceEEeeCchHh-
Confidence            579999999999999999999999999999999864      2222111000     000   000000 000000000 


Q ss_pred             ccccccccccccccCCCcchhccHHHHHHHHHhcCCC-C--e-eEeeeeEEEEEEecCC---ceEEEEEEeccCCceEEE
Q 014324           86 ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPP-E--I-FLRGHQYLSFCISEVK---TTVTVKAKVLQTDEVIEI  158 (426)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~-~--~-i~~~~~v~~~~~~~~~---~~v~v~~~~~~~g~~~~~  158 (426)
                           .+...... ...+ .-+++..+.++|.+.++. +  - |+++++|++++..++.   ..+.|+.  ..+|+..+.
T Consensus        67 -----~fsdfp~p-~~~p-~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~--~~~g~~~~~  137 (531)
T PF00743_consen   67 -----AFSDFPFP-EDYP-DFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTT--ENDGKEETE  137 (531)
T ss_dssp             -----CCTTS-HC-CCCS-SSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEE--TTTTEEEEE
T ss_pred             -----cCCCcCCC-CCCC-CCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEe--ecCCeEEEE
Confidence                 01111111 1111 135678899999887753 2  2 9999999999986542   4677763  346666667


Q ss_pred             eecEEEeccCCchhh
Q 014324          159 KGNLLVAADGCLSSI  173 (426)
Q Consensus       159 ~~d~vI~AdG~~S~v  173 (426)
                      .+|.||.|+|.++.-
T Consensus       138 ~fD~VvvatG~~~~P  152 (531)
T PF00743_consen  138 EFDAVVVATGHFSKP  152 (531)
T ss_dssp             EECEEEEEE-SSSCE
T ss_pred             EeCeEEEcCCCcCCC
Confidence            899999999998743

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=99.24  E-value=1.2e-10  Score=113.41  Aligned_cols=140  Identities=19%  Similarity=0.089  Sum_probs=83.0

Q ss_pred             CCCCccEEEEcCChHHHHHHHHHHHcCCc-EEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceee
Q 014324            3 KKEKGKAVIVGGSIAGISCAHALLRAGWD-VVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTI   81 (426)
Q Consensus         3 ~~~~~~V~IvGaG~aGl~~A~~L~~~G~~-v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~   81 (426)
                      .+..+||+|||||++||++|+.|.++|+. ++||||+..++.      .+..+        ++     ..+. ...+.. 
T Consensus         5 ~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg------~W~~~--------ry-----~~l~-~~~p~~-   63 (443)
T COG2072           5 VATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGG------TWRYN--------RY-----PGLR-LDSPKW-   63 (443)
T ss_pred             cCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCC------cchhc--------cC-----CceE-ECCchh-
Confidence            34678999999999999999999999999 999999998653      11110        00     0000 000000 


Q ss_pred             ccccccccccccccccccCCCcchhccHHHHHHHHHhcCCCCeeEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeec
Q 014324           82 DQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEIFLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGN  161 (426)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d  161 (426)
                       ... .....+.    ....++....-+..+..++.+....--+.+++.|..+..+++...++|+   .++|...++++|
T Consensus        64 -~~~-~~~~p~~----~~~~~~~~~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~---~~~~~~~~~~a~  134 (443)
T COG2072          64 -LLG-FPFLPFR----WDEAFAPFAEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVT---TSDGGTGELTAD  134 (443)
T ss_pred             -eec-cCCCccC----CcccCCCcccHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEE---EcCCCeeeEecC
Confidence             000 0000000    0011111111234555555443322227788888888888887888888   455554337899


Q ss_pred             EEEeccCCchh
Q 014324          162 LLVAADGCLSS  172 (426)
Q Consensus       162 ~vI~AdG~~S~  172 (426)
                      .||.|+|..|.
T Consensus       135 ~vV~ATG~~~~  145 (443)
T COG2072         135 FVVVATGHLSE  145 (443)
T ss_pred             EEEEeecCCCC
Confidence            99999999653

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=99.23  E-value=2.5e-09  Score=102.98  Aligned_cols=37  Identities=22%  Similarity=0.301  Sum_probs=34.2

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP   41 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   41 (426)
                      .++||+|||||++|+++|+.|+++|++|+|+||....
T Consensus         2 ~~~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~~~   38 (376)
T PRK11259          2 MRYDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFMPP   38 (376)
T ss_pred             CcccEEEECCCHHHHHHHHHHHHCCCeEEEEecccCC
Confidence            3589999999999999999999999999999998754

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=99.20  E-value=4.2e-11  Score=104.73  Aligned_cols=138  Identities=21%  Similarity=0.152  Sum_probs=70.0

Q ss_pred             EEEcCChHHHHHHHHHHHcCCc-EEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccccccc
Q 014324           10 VIVGGSIAGISCAHALLRAGWD-VVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQATD   88 (426)
Q Consensus        10 ~IvGaG~aGl~~A~~L~~~G~~-v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (426)
                      +||||||+||++|..|.++|++ |+|||+.+.++.      .+.-.+..            ..+.......  ......+
T Consensus         1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg------~w~~~~~~------------~~~~~~~~~~--~~~~~~~   60 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGG------VWRRYYSY------------TRLHSPSFFS--SDFGLPD   60 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTT------HHHCH-TT------------TT-BSSSCCT--GGSS--C
T ss_pred             CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCC------eeEEeCCC------------CccccCcccc--ccccCCc
Confidence            6999999999999999999999 999999988642      11100000            0000000000  0000000


Q ss_pred             cccccccccccCCCcchhccHHHHHHHHHhcCCC-Ce-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEec
Q 014324           89 NAKVTRTLARDDNFNFRAAHWADLHGLLYNALPP-EI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAA  166 (426)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~-~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~A  166 (426)
                      -..+..............+.+..+.++|.+.++. +. ++++++|++++.+++.  +.|+   .++++  +++||.||.|
T Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~--w~v~---~~~~~--~~~a~~VVlA  133 (203)
T PF13738_consen   61 FESFSFDDSPEWRWPHDFPSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDG--WTVT---TRDGR--TIRADRVVLA  133 (203)
T ss_dssp             CCHSCHHHHHHHHHSBSSEBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTT--EEEE---ETTS---EEEEEEEEE-
T ss_pred             ccccccccCCCCCCCcccCCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccE--EEEE---EEecc--eeeeeeEEEe
Confidence            0000000000000011124556677777665553 56 9999999999987554  6666   56663  4889999999


Q ss_pred             cCCchhhh
Q 014324          167 DGCLSSIR  174 (426)
Q Consensus       167 dG~~S~vR  174 (426)
                      +|..|.-+
T Consensus       134 tG~~~~p~  141 (203)
T PF13738_consen  134 TGHYSHPR  141 (203)
T ss_dssp             --SSCSB-
T ss_pred             eeccCCCC
Confidence            99876644

...

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=99.19  E-value=2.2e-10  Score=109.22  Aligned_cols=59  Identities=22%  Similarity=0.197  Sum_probs=41.7

Q ss_pred             ccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEE-EEEEeccCCceEEEeecEEEeccCCchhh
Q 014324          107 AHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVT-VKAKVLQTDEVIEIKGNLLVAADGCLSSI  173 (426)
Q Consensus       107 ~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~-v~~~~~~~g~~~~~~~d~vI~AdG~~S~v  173 (426)
                      ++-..+.+.|.+.+. .|+ ++.+++|+++..+++  .|+ |+   +++|+   +++|.||.|.|.+|..
T Consensus       144 i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~--~v~gv~---~~~g~---i~ad~vV~a~G~~s~~  205 (358)
T PF01266_consen  144 IDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGG--RVTGVR---TSDGE---IRADRVVLAAGAWSPQ  205 (358)
T ss_dssp             EEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEETT--EEEEEE---ETTEE---EEECEEEE--GGGHHH
T ss_pred             ccccchhhhhHHHHHHhhhhccccccccchhhccc--cccccc---ccccc---cccceeEeccccccee
Confidence            455667777776654 588 999999999997544  455 55   56664   7999999999998764

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=99.18  E-value=5.6e-09  Score=101.72  Aligned_cols=35  Identities=26%  Similarity=0.533  Sum_probs=33.1

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP   41 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   41 (426)
                      +||+|||||++|+++|+.|+++|.+|+|+||...+
T Consensus         2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~~   36 (410)
T PRK12409          2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRYA   36 (410)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence            59999999999999999999999999999999854

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=99.17  E-value=2.7e-10  Score=108.01  Aligned_cols=169  Identities=17%  Similarity=0.080  Sum_probs=94.6

Q ss_pred             CCCccEEEEcCChHHHHHHHHHHHcC--CcEEEEcccCCCCCCCC------CcceeccChhHHH-------------HHH
Q 014324            4 KEKGKAVIVGGSIAGISCAHALLRAG--WDVVVLEKAGGPPTGSP------TGAGLGLDRPAQR-------------IIQ   62 (426)
Q Consensus         4 ~~~~~V~IvGaG~aGl~~A~~L~~~G--~~v~v~E~~~~~~~~~~------~~~~~~l~~~~~~-------------~l~   62 (426)
                      |..+||+|||||+.|+++|..|++++  ++|+|+||...+..++.      ...|+...|....             +.+
T Consensus         1 ~~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slka~l~~~g~~~~~~~~k   80 (429)
T COG0579           1 MMDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINEFAICK   80 (429)
T ss_pred             CCceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccccCcccceeccccCCCcchhhHHHHHHHHHHHHHHH
Confidence            35689999999999999999999998  99999999999876431      1124434443211             122


Q ss_pred             HHhcCCc-----------------hhhhccCcceeecccccccccccc---ccccc-----cCCCcchhccHHHHHHHHH
Q 014324           63 SWLNGRP-----------------HLLHLATVPLTIDQNQATDNAKVT---RTLAR-----DDNFNFRAAHWADLHGLLY  117 (426)
Q Consensus        63 ~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-----~~~~~~~~~~r~~l~~~L~  117 (426)
                      +++....                 +.+.+......+......+.+.+.   ..+..     ........++-..+-..|.
T Consensus        81 q~~~~f~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p~~giV~~~~~t~~l~  160 (429)
T COG0579          81 QLGIPFINCGKLSVATGEEEVERLEKLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVPSGGIVDPGELTRALA  160 (429)
T ss_pred             HhCCcccccCeEEEEEChHHHHHHHHHHHHHhhCCCcceeecCHHHHHhhCccccccceeeEEcCCCceEcHHHHHHHHH
Confidence            2221000                 000000000000000111111000   00000     0111223345555555566


Q ss_pred             hcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCchh-hhhhh
Q 014324          118 NALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSS-IRQSF  177 (426)
Q Consensus       118 ~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~-vR~~l  177 (426)
                      +.+. .|+ ++++++|++++...++  +++  ..+.+|++. ++|++||.|-|.+|- +.+..
T Consensus       161 e~a~~~g~~i~ln~eV~~i~~~~dg--~~~--~~~~~g~~~-~~ak~Vin~AGl~Ad~la~~~  218 (429)
T COG0579         161 EEAQANGVELRLNTEVTGIEKQSDG--VFV--LNTSNGEET-LEAKFVINAAGLYADPLAQMA  218 (429)
T ss_pred             HHHHHcCCEEEecCeeeEEEEeCCc--eEE--EEecCCcEE-EEeeEEEECCchhHHHHHHHh
Confidence            6544 577 9999999999986664  222  125677765 899999999999875 55554

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=99.17  E-value=8.6e-09  Score=106.20  Aligned_cols=36  Identities=44%  Similarity=0.757  Sum_probs=33.5

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP   42 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~   42 (426)
                      +||+|||||++|+++|+.|+++|++|+|+|+...+.
T Consensus       261 ~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~~~~  296 (662)
T PRK01747        261 RDAAIIGGGIAGAALALALARRGWQVTLYEADEAPA  296 (662)
T ss_pred             CCEEEECccHHHHHHHHHHHHCCCeEEEEecCCCcc
Confidence            699999999999999999999999999999987553

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=99.12  E-value=1.2e-09  Score=107.99  Aligned_cols=149  Identities=15%  Similarity=0.117  Sum_probs=82.4

Q ss_pred             CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC-CCCCCCCcceeccCh----hHHHHHHHHhcCCchhhhccCcc
Q 014324            4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG-PPTGSPTGAGLGLDR----PAQRIIQSWLNGRPHLLHLATVP   78 (426)
Q Consensus         4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~-~~~~~~~~~~~~l~~----~~~~~l~~~~~~~~~~~~~~~~~   78 (426)
                      +..+||+||||||||+.||+.+++.|.+|+++|+..+ ++.   .++.-.+..    ...+-++.+|..........+..
T Consensus         2 ~~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~---m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq   78 (618)
T PRK05192          2 PEEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQ---MSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQ   78 (618)
T ss_pred             CccceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccc---cCCccccccchhhHHHHHHHhcCCHHHHHHhhccCc
Confidence            3569999999999999999999999999999999852 221   111100111    11122222321101111122111


Q ss_pred             eeeccccccccccccccccccCCCcchhccHHHHHHHHHhcCC--CCeeEeeeeEEEEEEecCCceEEEEEEeccCCceE
Q 014324           79 LTIDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALP--PEIFLRGHQYLSFCISEVKTTVTVKAKVLQTDEVI  156 (426)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~--~~~i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~  156 (426)
                      ...  .....+..        ...+...+++..+.+.|.+.+.  .++..+...++++..+++ ....|.   ..+|.. 
T Consensus        79 ~r~--ln~skGpA--------V~s~RaQiDr~ly~kaL~e~L~~~~nV~I~q~~V~~Li~e~g-rV~GV~---t~dG~~-  143 (618)
T PRK05192         79 FRM--LNTSKGPA--------VRALRAQADRKLYRAAMREILENQPNLDLFQGEVEDLIVENG-RVVGVV---TQDGLE-  143 (618)
T ss_pred             eee--cccCCCCc--------eeCcHHhcCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEecCC-EEEEEE---ECCCCE-
Confidence            110  00000000        0001124677778888877664  356335677888775332 222344   456764 


Q ss_pred             EEeecEEEeccCCch
Q 014324          157 EIKGNLLVAADGCLS  171 (426)
Q Consensus       157 ~~~~d~vI~AdG~~S  171 (426)
                       +.|+.||.|+|.++
T Consensus       144 -I~Ak~VIlATGTFL  157 (618)
T PRK05192        144 -FRAKAVVLTTGTFL  157 (618)
T ss_pred             -EECCEEEEeeCcch
Confidence             89999999999865

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=99.11  E-value=5.6e-11  Score=115.75  Aligned_cols=149  Identities=19%  Similarity=0.146  Sum_probs=35.2

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccCh-hHHH-HHHHHhcCCchhhhccCcceeecccc
Q 014324            8 KAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDR-PAQR-IIQSWLNGRPHLLHLATVPLTIDQNQ   85 (426)
Q Consensus         8 ~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~-~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~   85 (426)
                      ||+||||||+|++||+.+++.|.+|+|+||...++.....+....+.. .... ....+    ..++.+....... . .
T Consensus         1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi----~~e~~~~~~~~~~-~-~   74 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGI----FREFLNRLRARGG-Y-P   74 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHH----HHHHHHST---------
T ss_pred             CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCH----HHHHHHHHhhhcc-c-c
Confidence            899999999999999999999999999999998764222222111222 1111 11111    1111111110000 0 0


Q ss_pred             ccccccccccccccCCCcchhccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEE
Q 014324           86 ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLL  163 (426)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~v  163 (426)
                      .......         .....+++..+...|.+.+. .|+ +++++.++++..+++ ....|++. ..+| ..+++|+++
T Consensus        75 ~~~~~~~---------~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~-~i~~V~~~-~~~g-~~~i~A~~~  142 (428)
T PF12831_consen   75 QEDRYGW---------VSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGG-RITGVIVE-TKSG-RKEIRAKVF  142 (428)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccc---------cccccccccccccccccccccccccccccccccccccccc-cccccccc-cccc-ccccccccc
Confidence            0000000         00022333455555666554 488 999999999997532 22234432 2335 556999999


Q ss_pred             EeccCCchhhh
Q 014324          164 VAADGCLSSIR  174 (426)
Q Consensus       164 I~AdG~~S~vR  174 (426)
                      |+|+|-....+
T Consensus       143 IDaTG~g~l~~  153 (428)
T PF12831_consen  143 IDATGDGDLAA  153 (428)
T ss_dssp             -----------
T ss_pred             ccccccccccc
Confidence            99999654333

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=99.10  E-value=2.5e-08  Score=97.02  Aligned_cols=36  Identities=36%  Similarity=0.421  Sum_probs=32.5

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHc-CC-cEEEEcccCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRA-GW-DVVVLEKAGG   40 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~-G~-~v~v~E~~~~   40 (426)
                      ..+||+|||||++|+++|+.|+++ |. +|+|+||...
T Consensus        29 ~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~   66 (407)
T TIGR01373        29 PTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWL   66 (407)
T ss_pred             ccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcccc
Confidence            568999999999999999999995 95 9999999853

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=99.08  E-value=1.3e-08  Score=98.80  Aligned_cols=172  Identities=18%  Similarity=0.139  Sum_probs=100.3

Q ss_pred             CCCCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcC-Cchhhhcc-----
Q 014324            2 EKKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNG-RPHLLHLA-----   75 (426)
Q Consensus         2 ~~~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~-~~~~~~~~-----   75 (426)
                      +.+..+||+|||||+.|+-.|+.++.+|++|+++|+.......  .++.-.+-+.+.+-|..+... ..+.+.+.     
T Consensus         8 ~~~~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGT--SsrstkLiHGGlRYl~~~e~~lvrEal~Er~vL~~   85 (532)
T COG0578           8 LRMEEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGT--SSRSTKLIHGGLRYLEQYEFSLVREALAEREVLLR   85 (532)
T ss_pred             ccccCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcc--cCccccCccchhhhhhhcchHHHHHHHHHHHHHHH
Confidence            3357899999999999999999999999999999999986542  233344455555555443221 01111111     


Q ss_pred             -C----cceeecccccc---------ccccc-------------cc------------ccccc-----CCCcchhccHHH
Q 014324           76 -T----VPLTIDQNQAT---------DNAKV-------------TR------------TLARD-----DNFNFRAAHWAD  111 (426)
Q Consensus        76 -~----~~~~~~~~~~~---------~~~~~-------------~~------------~~~~~-----~~~~~~~~~r~~  111 (426)
                       .    .+..+....+.         .|-..             ..            .+...     ..++-..++-..
T Consensus        86 ~APH~v~p~~~~lp~~~~~~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D~~vddaR  165 (532)
T COG0578          86 IAPHLVEPLPFLLPHLPGLRDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYPDGVVDDAR  165 (532)
T ss_pred             hCccccccCcCeEeccCCcccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcccchhhccceEEEccceechHH
Confidence             0    00000000000         00000             00            00000     000001111111


Q ss_pred             -HHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCchh-hhhhh
Q 014324          112 -LHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSS-IRQSF  177 (426)
Q Consensus       112 -l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~-vR~~l  177 (426)
                       ....+.++...|. +...++|+++..+.+  .+.|++++..+|++.+++|+.||-|+|.++- +++..
T Consensus       166 Lv~~~a~~A~~~Ga~il~~~~v~~~~re~~--v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~i~~~~  232 (532)
T COG0578         166 LVAANARDAAEHGAEILTYTRVESLRREGG--VWGVEVEDRETGETYEIRARAVVNAAGPWVDEILEMA  232 (532)
T ss_pred             HHHHHHHHHHhcccchhhcceeeeeeecCC--EEEEEEEecCCCcEEEEEcCEEEECCCccHHHHHHhh
Confidence             2233445556677 899999999987543  5667777788899999999999999999985 56654

>PLN02661 Putative thiazole synthesis

Probab=99.08  E-value=1.8e-09  Score=99.62  Aligned_cols=140  Identities=19%  Similarity=0.246  Sum_probs=82.1

Q ss_pred             CCCccEEEEcCChHHHHHHHHHHHc-CCcEEEEcccCCCCCCCCCcceec-----cChhHHHHHHHHhcCCchhhhccCc
Q 014324            4 KEKGKAVIVGGSIAGISCAHALLRA-GWDVVVLEKAGGPPTGSPTGAGLG-----LDRPAQRIIQSWLNGRPHLLHLATV   77 (426)
Q Consensus         4 ~~~~~V~IvGaG~aGl~~A~~L~~~-G~~v~v~E~~~~~~~~~~~~~~~~-----l~~~~~~~l~~~~~~~~~~~~~~~~   77 (426)
                      ..++||+|||||++|+++|+.|+++ |++|+|+||...++.+. +..+..     +.....++|+++|+.          
T Consensus        90 ~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~-~~gg~l~~~~vv~~~a~e~LeElGV~----------  158 (357)
T PLN02661         90 YADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGA-WLGGQLFSAMVVRKPAHLFLDELGVP----------  158 (357)
T ss_pred             cccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccce-eeCcccccccccccHHHHHHHHcCCC----------
Confidence            3468999999999999999999986 89999999988765322 112211     112234445555441          


Q ss_pred             ceeeccccccccccccccccccCCCcchhc-cHHHHHHHHHh-cCC-CCe-eEeeeeEEEEEEecCCceEEEEEE-----
Q 014324           78 PLTIDQNQATDNAKVTRTLARDDNFNFRAA-HWADLHGLLYN-ALP-PEI-FLRGHQYLSFCISEVKTTVTVKAK-----  148 (426)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~r~~l~~~L~~-~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~-----  148 (426)
                       ...    . ++              +... +-..+.+.|.+ .+. .++ ++.++.+.++..+++ ....+.+.     
T Consensus       159 -fd~----~-dg--------------y~vv~ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~g-rVaGVVvnw~~v~  217 (357)
T PLN02661        159 -YDE----Q-EN--------------YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGD-RVGGVVTNWALVA  217 (357)
T ss_pred             -ccc----C-CC--------------eeEecchHHHHHHHHHHHHhcCCCEEEeCeEeeeEEecCC-EEEEEEeecchhh
Confidence             100    0 00              0000 11233344544 333 477 999999999986433 22222211     


Q ss_pred             -eccCC---ceEEEeecEEEeccCCchhhhh
Q 014324          149 -VLQTD---EVIEIKGNLLVAADGCLSSIRQ  175 (426)
Q Consensus       149 -~~~~g---~~~~~~~d~vI~AdG~~S~vR~  175 (426)
                       +..++   +...++|+.||.|+|+.+++-.
T Consensus       218 ~~~~~~s~~dp~~I~AkaVVlATGh~g~~ga  248 (357)
T PLN02661        218 QNHDTQSCMDPNVMEAKVVVSSCGHDGPFGA  248 (357)
T ss_pred             hccCCCCccceeEEECCEEEEcCCCCCcchh
Confidence             01111   3346899999999998765433

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=99.08  E-value=2.5e-09  Score=105.04  Aligned_cols=162  Identities=22%  Similarity=0.208  Sum_probs=84.0

Q ss_pred             cEEEEcCChHHHHHHHHHHHcC-CcEEEEcccCCCCCCCCC-cceeccCh-----------hHHHHHHHHh-----cCCc
Q 014324            8 KAVIVGGSIAGISCAHALLRAG-WDVVVLEKAGGPPTGSPT-GAGLGLDR-----------PAQRIIQSWL-----NGRP   69 (426)
Q Consensus         8 ~V~IvGaG~aGl~~A~~L~~~G-~~v~v~E~~~~~~~~~~~-~~~~~l~~-----------~~~~~l~~~~-----~~~~   69 (426)
                      ||+|||||+||+++|+.++++| .+|+|+||.+..+..+.. +.++....           .....++.+.     ....
T Consensus         1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s~~s~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~   80 (439)
T TIGR01813         1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNSAIAAGGMNAAGTDQQKALGIEDSPELFIKDTLKGGRGINDP   80 (439)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCcccccCceeecCCCHHHHhcCCCCCHHHHHHHHHHhcCCCCCH
Confidence            7999999999999999999999 999999999876532221 22221111           1111121110     0000


Q ss_pred             hhhhccC--cceeeccccccccccccc--ccccc-C-----CCcc-hhccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEE
Q 014324           70 HLLHLAT--VPLTIDQNQATDNAKVTR--TLARD-D-----NFNF-RAAHWADLHGLLYNALP-PEI-FLRGHQYLSFCI  136 (426)
Q Consensus        70 ~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~-~-----~~~~-~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~  136 (426)
                      +.+....  ....+.+.  ..+-.+..  ..... .     ..+. ....-..+.+.|.+.++ .++ ++++++++++..
T Consensus        81 ~l~~~~~~~~~~~i~wl--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~gv~i~~~~~v~~l~~  158 (439)
T TIGR01813        81 ELVRILAEESADAVDWL--QDGVGARLDDLIQLGGHSVPRAHRPTGGAGSGAEIVQKLYKKAKKEGIDTRLNSKVEDLIQ  158 (439)
T ss_pred             HHHHHHHhccHHHHHHH--HhCCCeeeccccccCCcCCCccccCCCCCCCHHHHHHHHHHHHHHcCCEEEeCCEeeEeEE
Confidence            0000000  00000000  00000000  00000 0     0000 00112345566666554 478 999999999987


Q ss_pred             ecCCceEEEEEEeccCCceEEEeecEEEeccCCchh
Q 014324          137 SEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSS  172 (426)
Q Consensus       137 ~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~  172 (426)
                      ++++..+.+.++ ..+++...+.+|.||.|+|..+.
T Consensus       159 ~~~g~v~Gv~~~-~~~g~~~~~~a~~VVlAtGg~~~  193 (439)
T TIGR01813       159 DDQGTVVGVVVK-GKGKGIYIKAAKAVVLATGGFGS  193 (439)
T ss_pred             CCCCcEEEEEEE-eCCCeEEEEecceEEEecCCCCC
Confidence            544433334443 24555556889999999999887

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PRK07804 L-aspartate oxidase; Provisional

Probab=99.07  E-value=2.5e-09  Score=107.15  Aligned_cols=167  Identities=19%  Similarity=0.167  Sum_probs=87.1

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCc-ceecc----ChhHHHHHHHH---h-----------
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTG-AGLGL----DRPAQRIIQSW---L-----------   65 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~-~~~~l----~~~~~~~l~~~---~-----------   65 (426)
                      ..+||+|||+|.|||++|+.+++.|.+|+|+||.......+... .++..    .......++.+   +           
T Consensus        15 ~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~g~~d~~~v~~   94 (541)
T PRK07804         15 DAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGSTRWAQGGIAAVLDPGDSPEAHVADTLVAGAGLCDPDAVRS   94 (541)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCchhhhccceeeccCCCCCHHHHHHHHHHhcCCCCCHHHHHH
Confidence            46899999999999999999999999999999998754222111 12211    11111111111   0           


Q ss_pred             -----cCCchhhhccCcceeeccccccccccccccccccCCCcch----hccHHHHHHHHHhcCC-CCe-eEeeeeEEEE
Q 014324           66 -----NGRPHLLHLATVPLTIDQNQATDNAKVTRTLARDDNFNFR----AAHWADLHGLLYNALP-PEI-FLRGHQYLSF  134 (426)
Q Consensus        66 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~  134 (426)
                           ....+.+.+.+.++..    ..++................    ...=..+.+.|.+.+. .++ ++.++.++++
T Consensus        95 ~~~~s~~~i~~L~~~Gv~f~~----~~~G~~~~~~~~g~~~~r~~~~~~d~~G~~i~~~L~~~~~~~gV~i~~~~~v~~L  170 (541)
T PRK07804         95 LVAEGPRAVRELVALGARFDE----SPDGRWALTREGGHSRRRIVHAGGDATGAEVQRALDAAVRADPLDIREHALALDL  170 (541)
T ss_pred             HHHHHHHHHHHHHHcCCcccc----CCCCcEeeeccCCeecCeeEecCCCCCHHHHHHHHHHHHHhCCCEEEECeEeeee
Confidence                 0001122223332211    01111000000000000000    0011356666777664 478 9999999999


Q ss_pred             EEecCCceEEEEEEec---cCCceEEEeecEEEeccCCchhhhh
Q 014324          135 CISEVKTTVTVKAKVL---QTDEVIEIKGNLLVAADGCLSSIRQ  175 (426)
Q Consensus       135 ~~~~~~~~v~v~~~~~---~~g~~~~~~~d~vI~AdG~~S~vR~  175 (426)
                      ..++++..+.+.+.+.   .++....+.|+.||.|+|..|.++.
T Consensus       171 i~~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~~~~~  214 (541)
T PRK07804        171 LTDGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLGQLYA  214 (541)
T ss_pred             EEcCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCCCCCC
Confidence            8644333333433211   1222346899999999999997653

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=99.06  E-value=7.5e-08  Score=97.97  Aligned_cols=70  Identities=16%  Similarity=0.132  Sum_probs=47.5

Q ss_pred             cHHHHHHHHHhcC-CCCe-eEeeeeEEEEEEec-CCceEEEEEEeccCCceEEEeecEEEeccCCchh-hhhhh
Q 014324          108 HWADLHGLLYNAL-PPEI-FLRGHQYLSFCISE-VKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSS-IRQSF  177 (426)
Q Consensus       108 ~r~~l~~~L~~~~-~~~~-i~~~~~v~~~~~~~-~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~-vR~~l  177 (426)
                      +-..+...|.+.+ ..|+ ++.+++|+++..++ ++..+.|++++..+|+.+++++|.||.|+|.+|. +++.+
T Consensus       230 dp~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~~l~~~~  303 (627)
T PLN02464        230 NDSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFCDEVRKMA  303 (627)
T ss_pred             cHHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhHHHHHHhc
Confidence            4345555555544 4588 99999999998654 2333345554445666656899999999999986 66655

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.05  E-value=3.4e-09  Score=107.96  Aligned_cols=38  Identities=32%  Similarity=0.449  Sum_probs=34.5

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP   42 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~   42 (426)
                      ..+||+|||||.|||+||+.+++.|.+|+|+||...+.
T Consensus        34 ~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~   71 (640)
T PRK07573         34 RKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPR   71 (640)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCC
Confidence            35799999999999999999999999999999976653

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=99.04  E-value=3.7e-08  Score=96.20  Aligned_cols=35  Identities=31%  Similarity=0.673  Sum_probs=32.5

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP   41 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   41 (426)
                      +||+|||||++|+++|+.|+++|++|+|+|+...+
T Consensus         1 ~~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~~   35 (416)
T PRK00711          1 MRVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPGP   35 (416)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCch
Confidence            38999999999999999999999999999998654

>PRK08275 putative oxidoreductase; Provisional

Probab=99.04  E-value=3.1e-09  Score=107.00  Aligned_cols=165  Identities=15%  Similarity=0.180  Sum_probs=86.4

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHc--CCcEEEEcccCCCCCCCC-Ccc-eec--cCh---hHHHHH--------------
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRA--GWDVVVLEKAGGPPTGSP-TGA-GLG--LDR---PAQRII--------------   61 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~--G~~v~v~E~~~~~~~~~~-~~~-~~~--l~~---~~~~~l--------------   61 (426)
                      ..+||+|||||.|||+||+.++++  |.+|+|+||.+....... .+. ++.  +.+   .....+              
T Consensus         8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~~~g~~~~~~~g~~~~~~~~~d~~~~~~~d~~~~~~~~~d~~   87 (554)
T PRK08275          8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKRSGAISMGMDGLNNAVIPGHATPEQYTKEITIANDGIVDQK   87 (554)
T ss_pred             EecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCchhhhhhhHhhhhccCCCCHHHHHHHHHHhcCCCccHH
Confidence            358999999999999999999987  689999999986432111 010 110  000   001111              


Q ss_pred             --HHHhc---CCchhhhccCcceeeccccccccccccccccccCCCcchhccHHHHHHHHHhcCC-CCe-eEeeeeEEEE
Q 014324           62 --QSWLN---GRPHLLHLATVPLTIDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALP-PEI-FLRGHQYLSF  134 (426)
Q Consensus        62 --~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~  134 (426)
                        +.+-.   ...+.+.+.+.++..    ..++..............+....-..+.+.|.+.+. .++ ++.++.++++
T Consensus        88 ~v~~~~~~s~~~i~~L~~~Gv~f~~----~~~g~~~~~~~~~~~~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~~v~~L  163 (554)
T PRK08275         88 AVYAYAEHSFETIQQLDRWGVKFEK----DETGDYAVKKVHHMGSYVLPMPEGHDIKKVLYRQLKRARVLITNRIMATRL  163 (554)
T ss_pred             HHHHHHHhhHHHHHHHHHCCCeeEe----CCCCCEeeecccccCcccccCCChHHHHHHHHHHHHHCCCEEEcceEEEEE
Confidence              11100   001122222222211    011110000000000000000011345566666554 478 9999999999


Q ss_pred             EEecCCceEEEEEEeccCCceEEEeecEEEeccCCchhh
Q 014324          135 CISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSI  173 (426)
Q Consensus       135 ~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~v  173 (426)
                      ..++++..+-+...+..+|+...+.++.||.|+|..+.+
T Consensus       164 i~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~~  202 (554)
T PRK08275        164 LTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAGRL  202 (554)
T ss_pred             EEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCcccc
Confidence            864343333344333457776678999999999998764

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=99.04  E-value=3.9e-09  Score=106.87  Aligned_cols=64  Identities=22%  Similarity=0.197  Sum_probs=44.3

Q ss_pred             HHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCchhhhh
Q 014324          111 DLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSIRQ  175 (426)
Q Consensus       111 ~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~vR~  175 (426)
                      .+...|.+.+. .|+ +++++.++++..+ ++..+.+...+..+|+...+.|+.||.|+|..|.+..
T Consensus       130 ~i~~~L~~~~~~~gv~i~~~~~v~~L~~~-~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~~~~~  195 (566)
T TIGR01812       130 ALLHTLYEQCLKLGVSFFNEYFALDLIHD-DGRVRGVVAYDLKTGEIVFFRAKAVVLATGGYGRIYK  195 (566)
T ss_pred             HHHHHHHHHHHHcCCEEEeccEEEEEEEe-CCEEEEEEEEECCCCcEEEEECCeEEECCCcccCCCC
Confidence            34555555443 488 9999999999864 3333334433345777667899999999999997654

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=99.03  E-value=3.4e-09  Score=106.39  Aligned_cols=39  Identities=18%  Similarity=0.366  Sum_probs=35.4

Q ss_pred             CCCCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            2 EKKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         2 ~~~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      +++..+||+|||||+.|+++|+.|+++|++|+|+||...
T Consensus         2 ~~~~~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d~   40 (546)
T PRK11101          2 RDSQETDVIIIGGGATGAGIARDCALRGLRCILVERHDI   40 (546)
T ss_pred             CCCccccEEEECcCHHHHHHHHHHHHcCCeEEEEECCCC
Confidence            455679999999999999999999999999999999654

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=99.03  E-value=2.1e-09  Score=104.90  Aligned_cols=62  Identities=16%  Similarity=0.132  Sum_probs=44.3

Q ss_pred             HHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCchh
Q 014324          110 ADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSS  172 (426)
Q Consensus       110 ~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~  172 (426)
                      ..+.+.|.+.++ .++ |+++++++++..+ ++..+.+.+.+..+|+...+.|+.||.|+|..+.
T Consensus       141 ~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e-~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~  204 (417)
T PF00890_consen  141 KALIEALAKAAEEAGVDIRFNTRVTDLITE-DGRVTGVVAENPADGEFVRIKAKAVILATGGFGG  204 (417)
T ss_dssp             HHHHHHHHHHHHHTTEEEEESEEEEEEEEE-TTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred             HHHHHHHHHHHhhcCeeeeccceeeeEEEe-CCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence            556666766665 478 9999999999985 3344456665567888888999999999999985

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.03  E-value=5.4e-09  Score=105.31  Aligned_cols=165  Identities=19%  Similarity=0.177  Sum_probs=87.4

Q ss_pred             CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCC-Ccceec--cC-----hhHHHH-HHHH---h--cC--
Q 014324            4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSP-TGAGLG--LD-----RPAQRI-IQSW---L--NG--   67 (426)
Q Consensus         4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~-~~~~~~--l~-----~~~~~~-l~~~---~--~~--   67 (426)
                      +..+||+|||+|.|||++|+.+++.|.+|+|+||....+..+. .+.++.  +.     ....+. .+..   +  ..  
T Consensus         3 ~~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~~~~~Ds~e~~~~d~~~~g~~~~d~   82 (566)
T PRK06452          3 KIEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRSHSAAAEGGIAAYIPGNSDPNDNPDYMTYDTVKGGDYLVDQ   82 (566)
T ss_pred             cccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCCcchhhccchhhhccccCCCcccHHHHHHHHHHhhccCCCH
Confidence            3568999999999999999999999999999999876443221 111221  10     011111 1100   0  00  


Q ss_pred             ------------CchhhhccCcceeeccccccccccccccccccCCCc-chh--ccHHHHHHHHHhcCC-CCe-eEeeee
Q 014324           68 ------------RPHLLHLATVPLTIDQNQATDNAKVTRTLARDDNFN-FRA--AHWADLHGLLYNALP-PEI-FLRGHQ  130 (426)
Q Consensus        68 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~r~~l~~~L~~~~~-~~~-i~~~~~  130 (426)
                                  ..+.+.+.+.++...    .++.............. ...  ..=..+.+.|.+.+. .++ ++.++.
T Consensus        83 ~~v~~~~~~s~~~i~~L~~~Gv~f~~~----~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~~  158 (566)
T PRK06452         83 DAAELLSNKSGEIVMLLERWGALFNRQ----PDGRVAVRYFGGQTYPRTRFVGDKTGMALLHTLFERTSGLNVDFYNEWF  158 (566)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCccccC----CCCcEeccCCcCccCCeeEecCCCCHHHHHHHHHHHHHhCCCEEEeCcE
Confidence                        011222233322110    01100000000000000 000  001234555555443 478 999999


Q ss_pred             EEEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCchhh
Q 014324          131 YLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSI  173 (426)
Q Consensus       131 v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~v  173 (426)
                      ++++..+ ++..+-|...+..+|+...+.|+.||.|+|..+.+
T Consensus       159 ~~~Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~l  200 (566)
T PRK06452        159 SLDLVTD-NKKVVGIVAMQMKTLTPFFFKTKAVVLATGGMGML  200 (566)
T ss_pred             EEEEEEE-CCEEEEEEEEECCCCeEEEEEeCeEEECCCccccc
Confidence            9999874 34334455444456666679999999999999854

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=99.02  E-value=5.3e-09  Score=106.10  Aligned_cols=155  Identities=15%  Similarity=0.179  Sum_probs=83.9

Q ss_pred             CccEEEEcCChHHHHHHHHHHHc--CCcEEEEcccCCCCCCCCCccee-ccC----h--hHHHHHHHH---h--cC----
Q 014324            6 KGKAVIVGGSIAGISCAHALLRA--GWDVVVLEKAGGPPTGSPTGAGL-GLD----R--PAQRIIQSW---L--NG----   67 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~--G~~v~v~E~~~~~~~~~~~~~~~-~l~----~--~~~~~l~~~---~--~~----   67 (426)
                      .+||+|||||+|||+||+.+++.  |.+|+|+||........ ...|. .++    +  .....++.+   +  ..    
T Consensus        11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s~~-~a~G~~~~~~~~~~~ds~e~~~~d~~~~~~~~~d~~l   89 (608)
T PRK06854         11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRSGA-VAQGLSAINAYIGEGETPEDYVRYVRKDLMGIVREDL   89 (608)
T ss_pred             EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCCcc-cccCccccccccccCCCHHHHHHHHHHhccCCCCHHH
Confidence            57999999999999999999998  99999999987643221 11111 111    1  111111110   0  00    


Q ss_pred             ----------CchhhhccCcceeeccccccccccccccccccCCCcchhccHHHHHHHHHhcCC-CC-e-eEeeeeEEEE
Q 014324           68 ----------RPHLLHLATVPLTIDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALP-PE-I-FLRGHQYLSF  134 (426)
Q Consensus        68 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~-~~-~-i~~~~~v~~~  134 (426)
                                ..+.+...+.++..    ..++...    ..  ......+.-..+.+.|.+.+. .+ + ++.++.++++
T Consensus        90 v~~~~~~s~~~i~~L~~~Gv~f~~----~~~G~~~----~~--g~~~~~~~G~~~~~~L~~~a~~~ggV~i~~~~~v~~L  159 (608)
T PRK06854         90 VYDIARHVDSVVHLFEEWGLPIWK----DENGKYV----RR--GRWQIMINGESYKPIVAEAAKKALGDNVLNRVFITDL  159 (608)
T ss_pred             HHHHHHhHHHHHHHHHHcCCeeee----cCCCCcc----cc--CCccCCCChHHHHHHHHHHHHhcCCCEEEeCCEEEEE
Confidence                      00112222222111    0011100    00  000001122456666666554 34 7 9999999998


Q ss_pred             EEecCCceEEEEEEeccCCceEEEeecEEEeccCCchh
Q 014324          135 CISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSS  172 (426)
Q Consensus       135 ~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~  172 (426)
                      ..++ +..+.|...+..+|+...+.|+.||.|+|..+.
T Consensus       160 i~~~-g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~  196 (608)
T PRK06854        160 LVDD-NRIAGAVGFSVRENKFYVFKAKAVIVATGGAAG  196 (608)
T ss_pred             EEeC-CEEEEEEEEEccCCcEEEEECCEEEECCCchhh
Confidence            7543 322223332345666667899999999999875

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.02  E-value=5.6e-09  Score=105.65  Aligned_cols=163  Identities=20%  Similarity=0.166  Sum_probs=87.1

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcC---CcEEEEcccCCCCCCCCCc-ceec--cCh---hHHH-----HHH--------
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAG---WDVVVLEKAGGPPTGSPTG-AGLG--LDR---PAQR-----IIQ--------   62 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G---~~v~v~E~~~~~~~~~~~~-~~~~--l~~---~~~~-----~l~--------   62 (426)
                      .++||+|||||+|||++|+.+++.|   .+|+|+||....+..+... .|+.  +.+   .+.+     .++        
T Consensus         4 ~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~~s~~a~Gg~~a~~~~~~~ds~e~~~~d~~~~g~~~~d~   83 (577)
T PRK06069          4 LKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSHSVSAEGGTAAVLYPEKGDSFDLHAYDTVKGSDFLADQ   83 (577)
T ss_pred             eecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCCCceecccccceeeccccCCCHHHHHHHHHHhhcccCCH
Confidence            4689999999999999999999998   8999999998755322111 1211  111   1111     110        


Q ss_pred             -------HHhcCCchhhhccCcceeeccccccccccccccccccCCCcchhc----c--HHHHHHHHHhcC-C-CCe-eE
Q 014324           63 -------SWLNGRPHLLHLATVPLTIDQNQATDNAKVTRTLARDDNFNFRAA----H--WADLHGLLYNAL-P-PEI-FL  126 (426)
Q Consensus        63 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--r~~l~~~L~~~~-~-~~~-i~  126 (426)
                             .-.....+.+.+.+.++..    ..++..... ..  .......+    +  =..+.+.|.+.+ . .++ ++
T Consensus        84 ~lv~~~~~~s~~~i~~L~~~Gv~f~~----~~~G~~~~~-~~--~g~~~~r~~~~~d~tG~~i~~~L~~~~~~~~gv~i~  156 (577)
T PRK06069         84 DAVEVFVREAPEEIRFLDHWGVPWSR----RPDGRISQR-PF--GGMSFPRTTFAADKTGFYIMHTLYSRALRFDNIHFY  156 (577)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCeeEe----cCCCcEeee-ec--CCcccceeeEcCCCchHHHHHHHHHHHHhcCCCEEE
Confidence                   0000001122233333211    011110000 00  00000000    0  023555555544 3 477 99


Q ss_pred             eeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCchhhhh
Q 014324          127 RGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSIRQ  175 (426)
Q Consensus       127 ~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~vR~  175 (426)
                      .++.++++..+ ++..+.+...+..+|+...+.|+.||.|+|..+.+..
T Consensus       157 ~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~~~~  204 (577)
T PRK06069        157 DEHFVTSLIVE-NGVFKGVTAIDLKRGEFKVFQAKAGIIATGGAGRLYG  204 (577)
T ss_pred             ECCEEEEEEEE-CCEEEEEEEEEcCCCeEEEEECCcEEEcCchhcccCC
Confidence            99999999764 3333334333345676667899999999999987543

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=99.02  E-value=3.3e-09  Score=104.98  Aligned_cols=36  Identities=31%  Similarity=0.381  Sum_probs=33.9

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ..+||+|||+|++|+++|+.++++|.+|+|+||.+.
T Consensus         3 ~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~   38 (466)
T PRK08274          3 SMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPR   38 (466)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            458999999999999999999999999999999874

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.02  E-value=5.2e-09  Score=105.77  Aligned_cols=62  Identities=10%  Similarity=0.100  Sum_probs=43.2

Q ss_pred             HHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCchhh
Q 014324          111 DLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSI  173 (426)
Q Consensus       111 ~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~v  173 (426)
                      .+.+.|.+.+. .++ ++.++.++++..+ ++..+.+...+..+|+...+.|+.||.|+|..+.+
T Consensus       136 ~i~~~L~~~~~~~gi~i~~~t~v~~L~~~-~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~~~  199 (575)
T PRK05945        136 AILHELVNNLRRYGVTIYDEWYVMRLILE-DNQAKGVVMYHIADGRLEVVRAKAVMFATGGYGRV  199 (575)
T ss_pred             HHHHHHHHHHhhCCCEEEeCcEEEEEEEE-CCEEEEEEEEEcCCCeEEEEECCEEEECCCCCcCC
Confidence            45555666554 478 9999999998764 33323333333457776678999999999999875

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.01  E-value=9.2e-09  Score=104.05  Aligned_cols=39  Identities=28%  Similarity=0.407  Sum_probs=35.4

Q ss_pred             CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324            4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP   42 (426)
Q Consensus         4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~   42 (426)
                      |.++||+|||+|+|||++|+.+++.|.+|+|+||.+..+
T Consensus         1 ~~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~   39 (589)
T PRK08641          1 MAKGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKR   39 (589)
T ss_pred             CCCccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCC
Confidence            355799999999999999999999999999999988754

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=99.01  E-value=6.1e-09  Score=105.76  Aligned_cols=164  Identities=16%  Similarity=0.170  Sum_probs=88.8

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCC-cceec--cC---hhHHHH-HHH---------------
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPT-GAGLG--LD---RPAQRI-IQS---------------   63 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~-~~~~~--l~---~~~~~~-l~~---------------   63 (426)
                      .+||+|||+|.|||++|+.+++.|.+|+|+||....+..+.. ..++.  +.   +...+. ++.               
T Consensus        50 ~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~Dt~~~g~~~~d~~lv~  129 (635)
T PLN00128         50 TYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQ  129 (635)
T ss_pred             ecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCCchHHhhcCceeecCCCCCCCHHHHHHHHHHhhCCCCCHHHHH
Confidence            579999999999999999999999999999998765432211 11221  11   111111 110               


Q ss_pred             -H---hcCCchhhhccCcceeeccccccccccccccccccC------CCcchh-----ccHHHHHHHHHhcC-CCCe-eE
Q 014324           64 -W---LNGRPHLLHLATVPLTIDQNQATDNAKVTRTLARDD------NFNFRA-----AHWADLHGLLYNAL-PPEI-FL  126 (426)
Q Consensus        64 -~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~-----~~r~~l~~~L~~~~-~~~~-i~  126 (426)
                       +   .....+.+.+.+.++..    ..++...........      ......     ..-..+.+.|.+.+ +.++ ++
T Consensus       130 ~l~~~s~~~i~~L~~~Gv~F~~----~~~g~~~~~~~gg~s~~~~~~g~~~r~~~~~d~tG~~i~~~L~~~a~~~gv~i~  205 (635)
T PLN00128        130 YMCREAPKAVIELENYGLPFSR----TEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHAMLHTLYGQAMKHNTQFF  205 (635)
T ss_pred             HHHHhHHHHHHHHHhCCCcccc----CCCCceeeccccccccccCCCcceeeeeccCCCCHHHHHHHHHHHHHhCCCEEE
Confidence             0   00001223333333221    011110000000000      000000     01134555565544 3578 99


Q ss_pred             eeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCchhh
Q 014324          127 RGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSI  173 (426)
Q Consensus       127 ~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~v  173 (426)
                      .++.++++..++++..+-+...+..+|+...+.++.||.|+|..+..
T Consensus       206 ~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~  252 (635)
T PLN00128        206 VEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGYGRA  252 (635)
T ss_pred             EeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCCccc
Confidence            99999998764344344455444567887789999999999998754

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=99.01  E-value=2.4e-09  Score=103.58  Aligned_cols=63  Identities=11%  Similarity=0.131  Sum_probs=44.8

Q ss_pred             ccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCchh-hhhhh
Q 014324          107 AHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSS-IRQSF  177 (426)
Q Consensus       107 ~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~-vR~~l  177 (426)
                      ++...+.+.|.+.+. .|+ ++++++|.+++..++  .+.|+   ..+|   +++||.||.|+|.+|. +.+.+
T Consensus       146 vd~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~--~~~V~---~~~g---~i~ad~vV~A~G~~s~~l~~~~  211 (393)
T PRK11728        146 VDYRAVAEAMAELIQARGGEIRLGAEVTALDEHAN--GVVVR---TTQG---EYEARTLINCAGLMSDRLAKMA  211 (393)
T ss_pred             ECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEecCC--eEEEE---ECCC---EEEeCEEEECCCcchHHHHHHh
Confidence            455667777777665 477 999999999885433  45554   3444   3899999999999984 55544

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=99.01  E-value=4.4e-09  Score=103.56  Aligned_cols=71  Identities=15%  Similarity=0.081  Sum_probs=48.0

Q ss_pred             ccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCch-hhhhhhc
Q 014324          107 AHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLS-SIRQSFL  178 (426)
Q Consensus       107 ~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S-~vR~~l~  178 (426)
                      ++-..+-+.|.+.+. .|+ ++++++|++++.+++ ..|.++..+..+|+..+++||+||.|.|.+| .+++.++
T Consensus       175 Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~-~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s~~La~~~G  248 (483)
T TIGR01320       175 VDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSD-GSWTVTVKNTRTGGKRTLNTRFVFVGAGGGALPLLQKSG  248 (483)
T ss_pred             ECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCC-CeEEEEEeeccCCceEEEECCEEEECCCcchHHHHHHcC
Confidence            555667777766654 478 999999999986433 3455543334455544589999988888765 5776653

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=99.01  E-value=5.8e-09  Score=102.15  Aligned_cols=71  Identities=15%  Similarity=0.073  Sum_probs=48.2

Q ss_pred             hccHHHHHHHHHhcC-CC-Ce-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCchh-hhhhh
Q 014324          106 AAHWADLHGLLYNAL-PP-EI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSS-IRQSF  177 (426)
Q Consensus       106 ~~~r~~l~~~L~~~~-~~-~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~-vR~~l  177 (426)
                      .++...+.+.|.+.+ .. |+ ++++++|++++..+ +..|+++++...+|+..+++||+||.|.|++|. +.+.+
T Consensus       180 ~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~-d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS~~La~~~  254 (497)
T PRK13339        180 DVNFGALTRKLAKHLESHPNAQVKYNHEVVDLERLS-DGGWEVTVKDRNTGEKREQVADYVFIGAGGGAIPLLQKS  254 (497)
T ss_pred             ecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECC-CCCEEEEEEecCCCceEEEEcCEEEECCCcchHHHHHHc
Confidence            456677777777766 33 67 99999999998642 234555433234453335899999999998874 55555

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.00  E-value=9e-09  Score=104.15  Aligned_cols=165  Identities=21%  Similarity=0.221  Sum_probs=87.2

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCc-ceec--c---ChhHHH-------------------
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTG-AGLG--L---DRPAQR-------------------   59 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~-~~~~--l---~~~~~~-------------------   59 (426)
                      ..+||+|||+|.|||++|+.+++.|.+|+|+||.......+... .++.  +   .....+                   
T Consensus        11 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~g~t~~a~Ggi~~~~~~~~~ds~~~~~~dt~~~g~~~~d~~~v   90 (591)
T PRK07057         11 RKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRSHTVAAQGGIGASLGNMSEDNWHYHFYDTIKGSDWLGDQDAI   90 (591)
T ss_pred             ccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCCchhccCCcccccccccccChhHhHHHHHHhcCCCCCHHHH
Confidence            45799999999999999999999999999999986543321110 1111  1   111111                   


Q ss_pred             -HHHHHhcCCchhhhccCcceeeccccccccccccccccccCC-C---cchhc------cHHHHHHHHHhcC-CCCe-eE
Q 014324           60 -IIQSWLNGRPHLLHLATVPLTIDQNQATDNAKVTRTLARDDN-F---NFRAA------HWADLHGLLYNAL-PPEI-FL  126 (426)
Q Consensus        60 -~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~------~r~~l~~~L~~~~-~~~~-i~  126 (426)
                       .+-+-.....+.+.+.+.++...    .++............ .   +...+      .=..+.+.|.+.+ +.++ ++
T Consensus        91 ~~~~~~a~~~i~~L~~~Gv~f~~~----~~G~~~~~~~gg~s~~~~~~~~~r~~~~~~~tG~~l~~~L~~~~~~~gi~i~  166 (591)
T PRK07057         91 EFMCREAPNVVYELEHFGMPFDRN----ADGTIYQRPFGGHTANYGEKPVQRACAAADRTGHALLHTLYQQNVAAKTQFF  166 (591)
T ss_pred             HHHHHHHHHHHHHHHhcCCcceeC----CCCcEeeeccCCccccccCCccceeeecCCCChHHHHHHHHHHHHhcCCEEE
Confidence             11000000011122333332210    111100000000000 0   00000      0023555565544 3577 99


Q ss_pred             eeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCchhh
Q 014324          127 RGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSI  173 (426)
Q Consensus       127 ~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~v  173 (426)
                      .++.++++..++++..+.|...+..+|+...+.++.||.|+|..+.+
T Consensus       167 ~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~  213 (591)
T PRK07057        167 VEWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGGAGRI  213 (591)
T ss_pred             eCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCcccc
Confidence            99999998865444344455444556776678999999999999864

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.99  E-value=8.7e-09  Score=103.60  Aligned_cols=163  Identities=17%  Similarity=0.127  Sum_probs=84.9

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCC-CCC-cceec--cC--hhHHHHHHHH---h--c-------
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTG-SPT-GAGLG--LD--RPAQRIIQSW---L--N-------   66 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~-~~~-~~~~~--l~--~~~~~~l~~~---~--~-------   66 (426)
                      ..+||+|||+|.|||+||+.+ +.|.+|+|+||......+ +.. +.++.  ..  ....+.++.+   +  .       
T Consensus         6 ~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~~~gG~s~~a~gg~~~~~~~~d~~~~~~~d~~~~~~~~~d~~lv~   84 (543)
T PRK06263          6 MITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLFGKSGCTVMAEGGYNAVLNPEDSFEKHFEDTMKGGAYLNDPKLVE   84 (543)
T ss_pred             eccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCCCCCccccccCceEEEeCCCCCCHHHHHHHHHHHhcCCCCHHHHH
Confidence            458999999999999999999 899999999998642211 111 11221  11  1111111111   0  0       


Q ss_pred             -------CCchhhhccCcceeecccccccccccccccccc-CCCcchh--ccHHHHHHHHHhcCC-CCe-eEeeeeEEEE
Q 014324           67 -------GRPHLLHLATVPLTIDQNQATDNAKVTRTLARD-DNFNFRA--AHWADLHGLLYNALP-PEI-FLRGHQYLSF  134 (426)
Q Consensus        67 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~  134 (426)
                             ...+.+.+.+.++...    .++.......... .....+.  ..=..+...|.+.+. .++ +++++.++++
T Consensus        85 ~~~~~s~~~i~~L~~~Gv~f~~~----~~g~~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~t~v~~L  160 (543)
T PRK06263         85 ILVKEAPKRLKDLEKFGALFDRT----EDGEIAQRPFGGQSFNRTCYAGDRTGHEMMMGLMEYLIKERIKILEEVMAIKL  160 (543)
T ss_pred             HHHHHHHHHHHHHHHcCCcceeC----CCCceeecccCCeEcCeEEECCCCCHHHHHHHHHHHHhcCCCEEEeCeEeeee
Confidence                   0011222233322110    0110000000000 0000000  001345555666554 578 9999999999


Q ss_pred             EEecCCceEEEEEEeccCCceEEEeecEEEeccCCchh
Q 014324          135 CISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSS  172 (426)
Q Consensus       135 ~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~  172 (426)
                      ..+++...+.+...+..+|+...+.|+.||.|+|..+.
T Consensus       161 i~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~  198 (543)
T PRK06263        161 IVDENREVIGAIFLDLRNGEIFPIYAKATILATGGAGQ  198 (543)
T ss_pred             EEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCCCC
Confidence            86543223334443346777777999999999999875

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=98.99  E-value=9.7e-09  Score=103.75  Aligned_cols=165  Identities=16%  Similarity=0.148  Sum_probs=86.9

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHc--CCcEEEEcccCCCCCCCCCc-ceec--c---------------------ChhHH
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRA--GWDVVVLEKAGGPPTGSPTG-AGLG--L---------------------DRPAQ   58 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~--G~~v~v~E~~~~~~~~~~~~-~~~~--l---------------------~~~~~   58 (426)
                      ..+||+|||||.|||+||+.+++.  |.+|+|+||....+..+... .++.  .                     .+..+
T Consensus         3 ~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g~s~~a~Gg~~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v   82 (582)
T PRK09231          3 FQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFDYHFHDTVAGGDWLCEQDVV   82 (582)
T ss_pred             eeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCChhhccchhhhhcCCCCCHHHHHHHHHHhcccCCCHHHH
Confidence            458999999999999999999987  47999999997654322111 1111  0                     01111


Q ss_pred             HHHHHHhcCCchhhhccCcceeeccccccccccccccccccCCC-cchhc--cHHHHHHHHHhcCC--CCe-eEeeeeEE
Q 014324           59 RIIQSWLNGRPHLLHLATVPLTIDQNQATDNAKVTRTLARDDNF-NFRAA--HWADLHGLLYNALP--PEI-FLRGHQYL  132 (426)
Q Consensus        59 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~r~~l~~~L~~~~~--~~~-i~~~~~v~  132 (426)
                      +.+-+-.....+.+.+.+.++..    ..++............. .....  .=..+.+.|.+.+.  .++ ++.++.++
T Consensus        83 ~~~~~~s~~~i~~L~~~Gv~f~~----~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~v~  158 (582)
T PRK09231         83 EYFVHHCPTEMTQLEQWGCPWSR----KPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLKYPQIQRFDEHFVL  158 (582)
T ss_pred             HHHHHHHHHHHHHHHHcCCCccc----CCCCceeeeccccccCCeeEecCCCcHHHHHHHHHHHhhcCCCcEEEeCeEEE
Confidence            11110000001122333333221    01111000000000000 00000  01346666666543  367 89999999


Q ss_pred             EEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCchhhh
Q 014324          133 SFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSIR  174 (426)
Q Consensus       133 ~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~vR  174 (426)
                      ++..+ ++..+-+...+..+|+...+.|+.||.|||..|.+-
T Consensus       159 ~Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~l~  199 (582)
T PRK09231        159 DILVD-DGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVY  199 (582)
T ss_pred             EEEEe-CCEEEEEEEEEcCCCcEEEEECCEEEECCCCCcCCC
Confidence            98864 333333433335677766799999999999999764

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=98.99  E-value=7.2e-09  Score=102.20  Aligned_cols=72  Identities=18%  Similarity=0.171  Sum_probs=48.8

Q ss_pred             hccHHHHHHHHHhcCCC-C-e-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCch-hhhhhhc
Q 014324          106 AAHWADLHGLLYNALPP-E-I-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLS-SIRQSFL  178 (426)
Q Consensus       106 ~~~r~~l~~~L~~~~~~-~-~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S-~vR~~l~  178 (426)
                      .++...+.+.|.+.++. + + ++++++|++++.++++ .|+++..+..+|+..+++|++||.|.|.+| .+++.++
T Consensus       179 ~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg-~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s~~L~~~~G  254 (494)
T PRK05257        179 DVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDG-SWTVTVKDLKTGEKRTVRAKFVFIGAGGGALPLLQKSG  254 (494)
T ss_pred             EECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCC-CEEEEEEEcCCCceEEEEcCEEEECCCcchHHHHHHcC
Confidence            35667788888776654 4 7 9999999999864433 355553333446433589999988888765 5666653

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.99  E-value=9.2e-09  Score=103.94  Aligned_cols=165  Identities=19%  Similarity=0.165  Sum_probs=90.0

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCC-cceecc--C---hhHHH-HHHHH-------------
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPT-GAGLGL--D---RPAQR-IIQSW-------------   64 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~-~~~~~l--~---~~~~~-~l~~~-------------   64 (426)
                      ..+||+|||+|.|||+||+.+++.|.+|+|+||....+..+.. ..++..  .   ..+.+ .++.+             
T Consensus         6 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~~v   85 (588)
T PRK08958          6 REFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAI   85 (588)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCCccHHhhhhHhhhcCCCCCCCHHHHHHHHHHHhCCCCCHHHH
Confidence            4589999999999999999999999999999999765432211 112211  0   01111 11110             


Q ss_pred             ------hcCCchhhhccCcceeeccccccccccccccccccC-C---Ccc-hhc-----cHHHHHHHHHhcCC-CCe-eE
Q 014324           65 ------LNGRPHLLHLATVPLTIDQNQATDNAKVTRTLARDD-N---FNF-RAA-----HWADLHGLLYNALP-PEI-FL  126 (426)
Q Consensus        65 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~-~~~-----~r~~l~~~L~~~~~-~~~-i~  126 (426)
                            .....+.|.+.+.++..    ..++........... .   ... +.+     .=..|...|.+.+. .++ ++
T Consensus        86 ~~~~~~s~~~i~~L~~~Gv~f~~----~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~G~~i~~~L~~~~~~~gi~i~  161 (588)
T PRK08958         86 EYMCKTGPEAILELEHMGLPFSR----LDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHTTIF  161 (588)
T ss_pred             HHHHHHHHHHHHHHHHcCCCccc----CCCCceeecccccccccccccccceeEecCCCCHHHHHHHHHHHhhhcCCEEE
Confidence                  00011223333333221    111110000000000 0   000 000     01345556666554 578 99


Q ss_pred             eeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCchhh
Q 014324          127 RGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSI  173 (426)
Q Consensus       127 ~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~v  173 (426)
                      .++.++++..++++..+-+...+..+|+...+.|+.||.|+|..+.+
T Consensus       162 ~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~  208 (588)
T PRK08958        162 SEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGAGRI  208 (588)
T ss_pred             eCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCcccc
Confidence            99999999865444444455444567877779999999999999864

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=98.98  E-value=1.2e-08  Score=101.56  Aligned_cols=39  Identities=38%  Similarity=0.377  Sum_probs=35.8

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPT   43 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~   43 (426)
                      .++||+|||+|++|+++|+.++++|.+|+|+||.+..+.
T Consensus        60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG   98 (506)
T PRK06481         60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGG   98 (506)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCC
Confidence            468999999999999999999999999999999987653

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.97  E-value=1.4e-08  Score=103.02  Aligned_cols=163  Identities=15%  Similarity=0.141  Sum_probs=87.6

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCC-cceecc--C---hhHHHH-----HH------------
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPT-GAGLGL--D---RPAQRI-----IQ------------   62 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~-~~~~~l--~---~~~~~~-----l~------------   62 (426)
                      .+||+|||||+|||+||+.+++.|.+|+|+||.......+.. ..|+..  .   ....+.     ++            
T Consensus        12 ~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~d~~~~g~~~~d~~lv~   91 (598)
T PRK09078         12 KYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTRSHTVAAQGGISASLGNMGEDDWRWHMYDTVKGSDWLGDQDAIE   91 (598)
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCcchhhhcCCcccccCCCCCCCHHHHHHHHHHhccCCCCHHHHH
Confidence            479999999999999999999999999999998754332111 012211  1   111111     11            


Q ss_pred             HH---hcCCchhhhccCcceeeccccccccccccccccccC-----CCcchhc------cHHHHHHHHHhcCC-CCe-eE
Q 014324           63 SW---LNGRPHLLHLATVPLTIDQNQATDNAKVTRTLARDD-----NFNFRAA------HWADLHGLLYNALP-PEI-FL  126 (426)
Q Consensus        63 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~------~r~~l~~~L~~~~~-~~~-i~  126 (426)
                      .+   .....+.+.+.+.++..    ..++...........     ......+      .=..+.+.|.+.+. .++ ++
T Consensus        92 ~l~~~s~~~i~~L~~~Gv~f~~----~~~G~~~~~~~gg~~~~~~~~~~~~R~~~~~d~tG~~i~~~L~~~~~~~gi~i~  167 (598)
T PRK09078         92 YMCREAPAAVYELEHYGVPFSR----TEEGKIYQRPFGGMTTNYGKGPPAQRTCAAADRTGHAILHTLYQQSLKHNAEFF  167 (598)
T ss_pred             HHHHHHHHHHHHHHHcCCccee----cCCCceeecccCceecccCCCCccceeEecCCCCHHHHHHHHHHHHhhcCCEEE
Confidence            00   00001122233333221    011110000000000     0000000      00245566666554 578 99


Q ss_pred             eeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCchh
Q 014324          127 RGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSS  172 (426)
Q Consensus       127 ~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~  172 (426)
                      .++.++++..++++..+.|...+..+|+...+.|+.||.|+|..+.
T Consensus       168 ~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~  213 (598)
T PRK09078        168 IEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYGR  213 (598)
T ss_pred             EeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCcc
Confidence            9999999886443333345444456787778999999999999875

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.97  E-value=1.2e-08  Score=103.16  Aligned_cols=64  Identities=20%  Similarity=0.232  Sum_probs=44.9

Q ss_pred             HHHHHHHHhcCC-CCe-eEeeeeEEEEEEecC---CceEEEEEEeccCCceEEEeecEEEeccCCchhh
Q 014324          110 ADLHGLLYNALP-PEI-FLRGHQYLSFCISEV---KTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSI  173 (426)
Q Consensus       110 ~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~---~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~v  173 (426)
                      ..+.+.|.+.+. .++ ++.++.++++..+++   +..+-+...+..+|+...+.|+.||.|+|..+.+
T Consensus       140 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~  208 (583)
T PRK08205        140 HMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSGRV  208 (583)
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCccc
Confidence            346666776654 478 999999999886442   3333344333456776678999999999999865

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=98.97  E-value=1.4e-08  Score=103.14  Aligned_cols=165  Identities=17%  Similarity=0.149  Sum_probs=90.8

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCC-cceec--cC---hhHHHH-HHHH-------------
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPT-GAGLG--LD---RPAQRI-IQSW-------------   64 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~-~~~~~--l~---~~~~~~-l~~~-------------   64 (426)
                      ..+||+|||||.|||++|+.+++.|.+|+|+||....+..+.. ..++.  +.   ....+. ++..             
T Consensus        28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~lv  107 (617)
T PTZ00139         28 HTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRSHTVAAQGGINAALGNMTEDDWRWHAYDTVKGSDWLGDQDAI  107 (617)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCCCchhhcCCeeEEecCCCCCCHHHHHHHHHHHhCCCCCHHHH
Confidence            3689999999999999999999999999999998775432211 11221  11   111111 1100             


Q ss_pred             ------hcCCchhhhccCcceeecccccccccccccccccc-----CCCcchh----cc--HHHHHHHHHhcCC-CCe-e
Q 014324           65 ------LNGRPHLLHLATVPLTIDQNQATDNAKVTRTLARD-----DNFNFRA----AH--WADLHGLLYNALP-PEI-F  125 (426)
Q Consensus        65 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~----~~--r~~l~~~L~~~~~-~~~-i  125 (426)
                            .....+.+.+.+.++...    .++..........     .......    .+  =..+.+.|.+.+. .++ +
T Consensus       108 ~~l~~~s~~~i~~L~~~Gv~f~~~----~~g~~~~~~~gg~s~~~~~~~~~~r~~~~~d~tG~~i~~~L~~~a~~~gv~i  183 (617)
T PTZ00139        108 QYMCREAPQAVLELESYGLPFSRT----KDGKIYQRAFGGQSLKFGKGGQAYRCAAAADRTGHAMLHTLYGQSLKYDCNF  183 (617)
T ss_pred             HHHHHHHHHHHHHHHhcCCceEeC----CCCcEeecccCcccccccCCCccceeeecCCCcHHHHHHHHHHHHHhCCCEE
Confidence                  000112233344443221    1111000000000     0000000    01  1356666666554 588 9


Q ss_pred             EeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCchhh
Q 014324          126 LRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSI  173 (426)
Q Consensus       126 ~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~v  173 (426)
                      +.++.++++..++++..+-|...+..+|+...+.|+.||.|+|..+..
T Consensus       184 ~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~  231 (617)
T PTZ00139        184 FIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGYGRA  231 (617)
T ss_pred             EeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCCccc
Confidence            999999998864344333354444567887789999999999998753

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=98.96  E-value=1.5e-08  Score=102.07  Aligned_cols=163  Identities=15%  Similarity=0.121  Sum_probs=87.6

Q ss_pred             CccEEEEcCChHHHHHHHHHHHc--CCcEEEEcccCCCCCCCCCc-ceec--c---------------------ChhHHH
Q 014324            6 KGKAVIVGGSIAGISCAHALLRA--GWDVVVLEKAGGPPTGSPTG-AGLG--L---------------------DRPAQR   59 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~--G~~v~v~E~~~~~~~~~~~~-~~~~--l---------------------~~~~~~   59 (426)
                      .+||+|||||+|||+||+.+++.  |.+|+|+||....+..+... .++.  .                     .+..++
T Consensus         3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s~~a~Gg~~~~~~~~ds~e~~~~dt~~~g~~~~d~~lv~   82 (580)
T TIGR01176         3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHTVAAEGGSAAVTGDDDSLDEHFHDTVSGGDWLCEQDVVE   82 (580)
T ss_pred             ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCchhcCCchhhhcCCCCCHHHHHHHHHHhcCCcCcHHHHH
Confidence            57999999999999999999987  58999999998755422111 1111  0                     011111


Q ss_pred             HHHHHhcCCchhhhccCcceeeccccccccccccccccccCCC-cchhc--cHHHHHHHHHhcCC--CCe-eEeeeeEEE
Q 014324           60 IIQSWLNGRPHLLHLATVPLTIDQNQATDNAKVTRTLARDDNF-NFRAA--HWADLHGLLYNALP--PEI-FLRGHQYLS  133 (426)
Q Consensus        60 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~r~~l~~~L~~~~~--~~~-i~~~~~v~~  133 (426)
                      .+-+-.....+.+.+.+.++...    .++............. .....  .=..|.+.|.+.+.  .++ ++.++.+++
T Consensus        83 ~l~~~s~~~i~~L~~~Gv~f~~~----~~g~~~~~~~gg~~~~R~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~v~~  158 (580)
T TIGR01176        83 YFVAEAPKEMVQLEHWGCPWSRK----PDGRVNVRRFGGMKKERTWFAADKTGFHMLHTLFQTSLTYPQIMRYDEWFVTD  158 (580)
T ss_pred             HHHHHhHHHHHHHHHcCCccEec----CCCceeeeccCCccCCeeeecCCCCHHHHHHHHHHHHHhcCCCEEEeCeEEEE
Confidence            11111110112233333332211    1111000000000000 00000  11346666766543  367 889999999


Q ss_pred             EEEecCCceEEEEEEeccCCceEEEeecEEEeccCCchhh
Q 014324          134 FCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSI  173 (426)
Q Consensus       134 ~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~v  173 (426)
                      +..+ ++..+-+...+..+|+...+.|+.||.|||..|.+
T Consensus       159 Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~  197 (580)
T TIGR01176       159 LLVD-DGRVCGLVAIEMAEGRLVTILADAVVLATGGAGRV  197 (580)
T ss_pred             EEee-CCEEEEEEEEEcCCCcEEEEecCEEEEcCCCCccc
Confidence            8864 33333344434567877779999999999999865

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>PRK09077 L-aspartate oxidase; Provisional

Probab=98.94  E-value=1.7e-08  Score=101.21  Aligned_cols=167  Identities=21%  Similarity=0.241  Sum_probs=88.2

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCc-ceec--cCh--hHHHHHHHH---h--cC-------
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTG-AGLG--LDR--PAQRIIQSW---L--NG-------   67 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~-~~~~--l~~--~~~~~l~~~---~--~~-------   67 (426)
                      ..+||+|||+|+|||++|+.+++. .+|+|+||....+..+... .++.  +.+  .....++..   +  ..       
T Consensus         7 ~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g~t~~a~Ggi~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v~~   85 (536)
T PRK09077          7 HQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEGSTFYAQGGIAAVLDETDSIESHVEDTLIAGAGLCDEDAVRF   85 (536)
T ss_pred             ccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCCChhhccCCeeeccCCCccHHHHHHHHHHHccCCCCHHHHHH
Confidence            458999999999999999999986 8999999988654322111 1221  111  111111111   0  00       


Q ss_pred             -------CchhhhccCcceeeccccccccccccccccccCCCcc-hhc-----cHHHHHHHHHhcCC--CCe-eEeeeeE
Q 014324           68 -------RPHLLHLATVPLTIDQNQATDNAKVTRTLARDDNFNF-RAA-----HWADLHGLLYNALP--PEI-FLRGHQY  131 (426)
Q Consensus        68 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~r~~l~~~L~~~~~--~~~-i~~~~~v  131 (426)
                             ..+.+.+.+.++.....  ..+. ............. +.+     .-..+.+.|.+.+.  .++ |+.++.+
T Consensus        86 ~~~~~~~~i~~L~~~Gv~f~~~~~--~~g~-~~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~~~I~v~~~~~v  162 (536)
T PRK09077         86 IAENAREAVQWLIDQGVPFTTDEQ--ANGE-EGYHLTREGGHSHRRILHAADATGKAVQTTLVERARNHPNITVLERHNA  162 (536)
T ss_pred             HHHHHHHHHHHHHHcCCccccCCC--CCcc-ccccccCCCCccCCceEecCCCCHHHHHHHHHHHHHhCCCcEEEeeEEe
Confidence                   01122223332211000  0000 0000000000000 001     11346666666543  378 9999999


Q ss_pred             EEEEEec-----CCceEEEEEEeccCCceEEEeecEEEeccCCchhhhh
Q 014324          132 LSFCISE-----VKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSIRQ  175 (426)
Q Consensus       132 ~~~~~~~-----~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~vR~  175 (426)
                      +++..++     ++..+.|.+.+..+|+...+.++.||.|+|..+.+..
T Consensus       163 ~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~~~~~  211 (536)
T PRK09077        163 IDLITSDKLGLPGRRVVGAYVLNRNKERVETIRAKFVVLATGGASKVYL  211 (536)
T ss_pred             eeeeecccccCCCCEEEEEEEEECCCCcEEEEecCeEEECCCCCCCCCC
Confidence            9987643     1333345554455777777999999999999987654

>TIGR00275 flavoprotein, HI0933 family

Probab=98.94  E-value=2.8e-09  Score=102.91  Aligned_cols=150  Identities=21%  Similarity=0.229  Sum_probs=78.4

Q ss_pred             EEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCC-Ccce-eccChh--HHHHHHHHhcCCchhhh----ccCcceee
Q 014324           10 VIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSP-TGAG-LGLDRP--AQRIIQSWLNGRPHLLH----LATVPLTI   81 (426)
Q Consensus        10 ~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~-~~~~-~~l~~~--~~~~l~~~~~~~~~~~~----~~~~~~~~   81 (426)
                      +|||||+|||++|+.|+++|.+|+|+||.+.++.... .|.| ..+...  ..++.+.++.. .+.+.    ........
T Consensus         1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~-~~~~~~~l~~~~~~d~~   79 (400)
T TIGR00275         1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRN-GKFLRSALSRFSNKDLI   79 (400)
T ss_pred             CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCC-cHHHHHHHHhCCHHHHH
Confidence            5999999999999999999999999999988753210 1111 112211  11122222110 11111    00000000


Q ss_pred             ccccccccccccccccccCCCcchhccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEe
Q 014324           82 DQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIK  159 (426)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~  159 (426)
                      .+. ...|..+.. ......++ .......+.+.|.+.++ .++ ++++++++++..+  +..+.++   . ++..  +.
T Consensus        80 ~~~-~~~Gv~~~~-~~~g~~~p-~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~--~~~~~v~---~-~~~~--i~  148 (400)
T TIGR00275        80 DFF-ESLGLELKV-EEDGRVFP-CSDSAADVLDALLNELKELGVEILTNSKVKSIKKD--DNGFGVE---T-SGGE--YE  148 (400)
T ss_pred             HHH-HHcCCeeEE-ecCCEeEC-CCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEec--CCeEEEE---E-CCcE--EE
Confidence            000 000100000 00000011 11123556666666664 477 9999999999753  2345554   2 3443  78


Q ss_pred             ecEEEeccCCch
Q 014324          160 GNLLVAADGCLS  171 (426)
Q Consensus       160 ~d~vI~AdG~~S  171 (426)
                      +|.||.|+|.+|
T Consensus       149 ad~VIlAtG~~s  160 (400)
T TIGR00275       149 ADKVILATGGLS  160 (400)
T ss_pred             cCEEEECCCCcc
Confidence            999999999987

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>PRK07121 hypothetical protein; Validated

Probab=98.94  E-value=4.9e-09  Score=104.32  Aligned_cols=39  Identities=36%  Similarity=0.454  Sum_probs=35.7

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPT   43 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~   43 (426)
                      ..+||+|||+|.||+++|+.++++|.+|+|+||....+.
T Consensus        19 ~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG   57 (492)
T PRK07121         19 DEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGG   57 (492)
T ss_pred             CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCC
Confidence            358999999999999999999999999999999987553

>PRK08071 L-aspartate oxidase; Provisional

Probab=98.94  E-value=1.6e-08  Score=100.73  Aligned_cols=162  Identities=15%  Similarity=0.189  Sum_probs=86.0

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCc-ceec--cCh-hHH-HHHHHH---h-----------
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTG-AGLG--LDR-PAQ-RIIQSW---L-----------   65 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~-~~~~--l~~-~~~-~~l~~~---~-----------   65 (426)
                      ..+||+|||+|.|||++|+.+++ |.+|+|+||.+..+..+... .++.  +++ .+. ..++.+   +           
T Consensus         2 ~~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v~~   80 (510)
T PRK08071          2 PSADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSNSHLAQGGIAAAVATYDSPNDHFEDTLVAGCHHNNERAVRY   80 (510)
T ss_pred             CccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCCchhcCccceecccCCCCHHHHHHHHHHhccCcCCHHHHHH
Confidence            46899999999999999999976 89999999998755433211 1221  111 111 111111   0           


Q ss_pred             -----cCCchhhhccCcceeeccccccccccccccccccCCCcch----hccHHHHHHHHHhcCCCCe-eEeeeeEEEEE
Q 014324           66 -----NGRPHLLHLATVPLTIDQNQATDNAKVTRTLARDDNFNFR----AAHWADLHGLLYNALPPEI-FLRGHQYLSFC  135 (426)
Q Consensus        66 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~  135 (426)
                           ....+.+.+.+.++...    .++................    ...-..+.+.|.+.+..++ ++.++.++++.
T Consensus        81 ~~~~s~~~i~~L~~~Gv~f~~~----~~g~~~~~~~gg~~~~r~~~~~gd~~g~~i~~~L~~~~~~gV~i~~~~~v~~Li  156 (510)
T PRK08071         81 LVEEGPKEIQELIENGMPFDGD----ETGPLHLGKEGAHRKRRILHAGGDATGKNLLEHLLQELVPHVTVVEQEMVIDLI  156 (510)
T ss_pred             HHHHHHHHHHHHHHcCCccccC----CCCceeeccCcCccCCeEEecCCCCcHHHHHHHHHHHHhcCCEEEECeEhhhee
Confidence                 00011223333332210    0111000000000000000    0011345566666666688 99999999987


Q ss_pred             EecCCceEEEEEEeccCCceEEEeecEEEeccCCchhh
Q 014324          136 ISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSI  173 (426)
Q Consensus       136 ~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~v  173 (426)
                      .+ ++..+.+...+ .+|+...+.|+.||.|+|..+.+
T Consensus       157 ~~-~g~v~Gv~~~~-~~g~~~~i~Ak~VVlATGG~~~~  192 (510)
T PRK08071        157 IE-NGRCIGVLTKD-SEGKLKRYYADYVVLASGGCGGL  192 (510)
T ss_pred             ec-CCEEEEEEEEE-CCCcEEEEEcCeEEEecCCCccc
Confidence            53 33223344332 45666678999999999998863

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.92  E-value=2.3e-08  Score=101.90  Aligned_cols=38  Identities=24%  Similarity=0.197  Sum_probs=34.7

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP   42 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~   42 (426)
                      ..+||+|||||.|||++|+.+++.|.+|+|+||....+
T Consensus         7 ~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~   44 (626)
T PRK07803          7 HSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGK   44 (626)
T ss_pred             eeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCC
Confidence            35899999999999999999999999999999997643

>TIGR00551 nadB L-aspartate oxidase

Probab=98.92  E-value=2.2e-08  Score=99.43  Aligned_cols=162  Identities=20%  Similarity=0.199  Sum_probs=83.7

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCc-ceec--cCh-hH-HHHHHHH----------------
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTG-AGLG--LDR-PA-QRIIQSW----------------   64 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~-~~~~--l~~-~~-~~~l~~~----------------   64 (426)
                      .+||+|||+|+|||++|+.+++.|. |+|+||.+.....+... .++.  +.+ .+ ...++.+                
T Consensus         2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~   80 (488)
T TIGR00551         2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEGNSFYAQGGIAAVLAETDSIDSHVEDTLAAGAGICDREAVEFV   80 (488)
T ss_pred             CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCCcchhcCcCeeeeecCCCCHHHHHHHHHHhcCCcCCHHHHHHH
Confidence            4799999999999999999999997 99999997644322111 1111  111 00 0111100                


Q ss_pred             ---hcCCchhhhccCcceeeccccccccccccccccccCCCc-ch--hccHHHHHHHHHhcCC--CCe-eEeeeeEEEEE
Q 014324           65 ---LNGRPHLLHLATVPLTIDQNQATDNAKVTRTLARDDNFN-FR--AAHWADLHGLLYNALP--PEI-FLRGHQYLSFC  135 (426)
Q Consensus        65 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~r~~l~~~L~~~~~--~~~-i~~~~~v~~~~  135 (426)
                         .....+.+.+.+.++..    ..++.............. +.  ...-..+.+.|.+.+.  .++ +++++.++++.
T Consensus        81 ~~~~~~~i~~L~~~Gv~f~~----~~~g~~~~~~~gg~~~~r~~~~~~~~G~~l~~~L~~~~~~~~gi~i~~~~~v~~l~  156 (488)
T TIGR00551        81 VSDARSAVQWLVDQGVLFDR----HEQGSYALTREGGHSYRRILHAADATGREVITTLVKKALNHPNIRIIEGENALDLL  156 (488)
T ss_pred             HHhHHHHHHHHHHcCCccee----CCCCCccccCCCCcCCCeEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECeEeeeee
Confidence               00001122222222211    001100000000000000 00  0011456667777654  477 99999999998


Q ss_pred             EecCCceEEEEEEeccCCceEEEeecEEEeccCCchhhhh
Q 014324          136 ISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSIRQ  175 (426)
Q Consensus       136 ~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~vR~  175 (426)
                      .+ ++..+.+...+  .+....+.++.||.|+|..|.+..
T Consensus       157 ~~-~g~v~Gv~~~~--~~~~~~i~A~~VVlAtGG~~~~~~  193 (488)
T TIGR00551       157 IE-TGRVVGVWVWN--RETVETCHADAVVLATGGAGKLYQ  193 (488)
T ss_pred             cc-CCEEEEEEEEE--CCcEEEEEcCEEEECCCcccCCCC
Confidence            53 32222244322  244446899999999999998654

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>PLN02815 L-aspartate oxidase

Probab=98.90  E-value=2.4e-08  Score=100.59  Aligned_cols=164  Identities=16%  Similarity=0.194  Sum_probs=87.2

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCc-ceec--cCh--hHHHHHHHH---------------
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTG-AGLG--LDR--PAQRIIQSW---------------   64 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~-~~~~--l~~--~~~~~l~~~---------------   64 (426)
                      ..+||+|||+|.|||++|+.+++.| +|+|+||....+..+... .++.  +.+  .....++.+               
T Consensus        28 ~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~s~~a~Ggi~a~~~~~Ds~e~~~~d~~~~g~~~~d~~lv~~  106 (594)
T PLN02815         28 KYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESNTNYAQGGVSAVLDPSDSVESHMRDTIVAGAFLCDEETVRV  106 (594)
T ss_pred             cccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCcHHHhhcccccCCCCCCCHHHHHHHHHHhccCCCcHHHHHH
Confidence            4589999999999999999999999 999999998754322111 1221  111  111111111               


Q ss_pred             ----hcCCchhhhccCcceeeccccccccccccccccccCCCcc---hhccHHHHHHHHHhcCC--CCe-eEeeeeEEEE
Q 014324           65 ----LNGRPHLLHLATVPLTIDQNQATDNAKVTRTLARDDNFNF---RAAHWADLHGLLYNALP--PEI-FLRGHQYLSF  134 (426)
Q Consensus        65 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~r~~l~~~L~~~~~--~~~-i~~~~~v~~~  134 (426)
                          .....+.|.+.+.++...    .++...............   ....=..+.+.|.+.+.  .++ |+.++.++++
T Consensus       107 ~~~~s~e~i~~L~~~Gv~F~~~----~~g~~~~~~~gg~s~~R~~~~~d~tG~~i~~~L~~~~~~~~~i~i~~~~~~~~L  182 (594)
T PLN02815        107 VCTEGPERVKELIAMGASFDHG----EDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVKNDPNITFFEHHFAIDL  182 (594)
T ss_pred             HHHHHHHHHHHHHHhCCeeeec----CCCCccccCCCCCccCceeecCCCCHHHHHHHHHHHHHhcCCCEEEeceEhhee
Confidence                000011222333332210    011000000000000000   00011345556666553  377 9999999998


Q ss_pred             EEecCCc---eEEEEEEeccCCceEEEeecEEEeccCCchhh
Q 014324          135 CISEVKT---TVTVKAKVLQTDEVIEIKGNLLVAADGCLSSI  173 (426)
Q Consensus       135 ~~~~~~~---~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~v  173 (426)
                      ..++++.   .+-+...+..+|+...+.++.||.|+|..+.+
T Consensus       183 i~~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~~  224 (594)
T PLN02815        183 LTSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGAGHI  224 (594)
T ss_pred             eeecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCcceee
Confidence            8654432   23354444557777778999999999998753

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=98.90  E-value=1.9e-08  Score=94.50  Aligned_cols=143  Identities=15%  Similarity=0.151  Sum_probs=76.2

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCcEEEE-cccCCCCCCCCCcceeccChhHH----HHHHHHhcCCchhhhccCcceeec
Q 014324            8 KAVIVGGSIAGISCAHALLRAGWDVVVL-EKAGGPPTGSPTGAGLGLDRPAQ----RIIQSWLNGRPHLLHLATVPLTID   82 (426)
Q Consensus         8 ~V~IvGaG~aGl~~A~~L~~~G~~v~v~-E~~~~~~~~~~~~~~~~l~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~   82 (426)
                      ||+|||||.||+.||+++++.|.+|.++ ++......   .++.=.+...+.    +-++.+|-...........+... 
T Consensus         1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~---~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~-   76 (392)
T PF01134_consen    1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGE---MSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRM-   76 (392)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT-----SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEE-
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeeccccccc---ccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhc-
Confidence            7999999999999999999999999999 44444432   222111111122    22233332111111111111111 


Q ss_pred             cccccccccccccccccCCCcchhccHHHHHHHHHhcCCC--CeeEeeeeEEEEEEecCCceEEEEEEeccCCceEEEee
Q 014324           83 QNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPP--EIFLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKG  160 (426)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~--~~i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~  160 (426)
                       ...+.|...        ...-..++|..+.+.+.+.++.  ++.....+|+++..+. +..+.|.   +.+|+.  +.+
T Consensus        77 -lN~skGpav--------~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~~~V~~l~~e~-~~v~GV~---~~~g~~--~~a  141 (392)
T PF01134_consen   77 -LNRSKGPAV--------HALRAQVDRDKYSRAMREKLESHPNLTIIQGEVTDLIVEN-GKVKGVV---TKDGEE--IEA  141 (392)
T ss_dssp             -ESTTS-GGC--------TEEEEEE-HHHHHHHHHHHHHTSTTEEEEES-EEEEEECT-TEEEEEE---ETTSEE--EEE
T ss_pred             -ccccCCCCc--------cchHhhccHHHHHHHHHHHHhcCCCeEEEEcccceEEecC-CeEEEEE---eCCCCE--Eec
Confidence             001111000        0111257888888888887653  6633578899998643 3333455   677875  899


Q ss_pred             cEEEeccCC
Q 014324          161 NLLVAADGC  169 (426)
Q Consensus       161 d~vI~AdG~  169 (426)
                      |.||.|+|.
T Consensus       142 ~~vVlaTGt  150 (392)
T PF01134_consen  142 DAVVLATGT  150 (392)
T ss_dssp             CEEEE-TTT
T ss_pred             CEEEEeccc
Confidence            999999999

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=98.89  E-value=1.9e-08  Score=93.58  Aligned_cols=33  Identities=24%  Similarity=0.376  Sum_probs=31.6

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAG   39 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~   39 (426)
                      +||+||||||||+++|..|++.|++|+|||+..
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~   33 (300)
T TIGR01292         1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME   33 (300)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC
Confidence            689999999999999999999999999999876

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=98.88  E-value=2.5e-08  Score=91.71  Aligned_cols=37  Identities=32%  Similarity=0.463  Sum_probs=31.1

Q ss_pred             CCCccEEEEcCChHHHHHHHHHHHcCCc-EEEEcccCC
Q 014324            4 KEKGKAVIVGGSIAGISCAHALLRAGWD-VVVLEKAGG   40 (426)
Q Consensus         4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~-v~v~E~~~~   40 (426)
                      |..+||+|||||||||+||+.++++|++ ++|+|+...
T Consensus         1 ~~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~   38 (305)
T COG0492           1 MKIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEP   38 (305)
T ss_pred             CceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCc
Confidence            3568999999999999999999999999 655565543

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=98.88  E-value=1.4e-08  Score=88.13  Aligned_cols=142  Identities=18%  Similarity=0.147  Sum_probs=77.4

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCC-----CCcc----eeccChhHHHHHHHHhcCCchhhhccCcc
Q 014324            8 KAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGS-----PTGA----GLGLDRPAQRIIQSWLNGRPHLLHLATVP   78 (426)
Q Consensus         8 ~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~-----~~~~----~~~l~~~~~~~l~~~~~~~~~~~~~~~~~   78 (426)
                      +|+|||+|++|+++|..|+.+|++|+||||..-.+..-     .-|+    .-.+.++.-.+++-     .+.+.+.+..
T Consensus         3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~-----Ve~~~~~glV   77 (331)
T COG3380           3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRA-----VEALRDDGLV   77 (331)
T ss_pred             cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHH-----HHHHHhCCce
Confidence            69999999999999999999999999999998765421     0011    12244443333332     1222223322


Q ss_pred             eee-ccccccccccccccccccCCCcch-hccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCce
Q 014324           79 LTI-DQNQATDNAKVTRTLARDDNFNFR-AAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEV  155 (426)
Q Consensus        79 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~  155 (426)
                      ... ...+...+..   ........++. ...-..|-+.|.    ... |.++++|+.+...  ++.++++   .++|+.
T Consensus        78 ~~W~~~~~~~~~~~---~~~~~d~~pyvg~pgmsalak~LA----tdL~V~~~~rVt~v~~~--~~~W~l~---~~~g~~  145 (331)
T COG3380          78 DVWTPAVWTFTGDG---SPPRGDEDPYVGEPGMSALAKFLA----TDLTVVLETRVTEVART--DNDWTLH---TDDGTR  145 (331)
T ss_pred             eeccccccccccCC---CCCCCCCCccccCcchHHHHHHHh----ccchhhhhhhhhhheec--CCeeEEE---ecCCCc
Confidence            111 0111111110   00111111121 122244445444    334 8899999999875  4577776   556654


Q ss_pred             EEEeecEEEecc
Q 014324          156 IEIKGNLLVAAD  167 (426)
Q Consensus       156 ~~~~~d~vI~Ad  167 (426)
                       ...+|.||.|-
T Consensus       146 -~~~~d~vvla~  156 (331)
T COG3380         146 -HTQFDDVVLAI  156 (331)
T ss_pred             -ccccceEEEec
Confidence             35788777763

>TIGR00136 gidA glucose-inhibited division protein A

Probab=98.87  E-value=3.1e-08  Score=97.99  Aligned_cols=148  Identities=12%  Similarity=0.057  Sum_probs=81.2

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceecc---Chh-HHHHHHHHhcCCchhhhccCcceeec
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGL---DRP-AQRIIQSWLNGRPHLLHLATVPLTID   82 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l---~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~   82 (426)
                      +||+|||||+||+.+|..+++.|.+|+|+|+.......  .++.-.+   ... ..+-++.+|...............  
T Consensus         1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~--~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r--   76 (617)
T TIGR00136         1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGK--CSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFR--   76 (617)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccC--CCccccccccccchhhhhhhcccchHHHHHHhhceehe--
Confidence            69999999999999999999999999999997542211  1110000   000 112222222100111111111110  


Q ss_pred             cccccccccccccccccCCCcchhccHHHHHHHHHhcCCC--CeeEeeeeEEEEEEecCCceEEEEEEeccCCceEEEee
Q 014324           83 QNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPP--EIFLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKG  160 (426)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~--~~i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~  160 (426)
                        .....+  +.    ....+-..+++..+.+.+.+.+++  ++..+...++++..++++..+.|.   ..+|..  +.|
T Consensus        77 --~ln~sk--gp----AV~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~~Vv~li~e~~g~V~GV~---t~~G~~--I~A  143 (617)
T TIGR00136        77 --VLNSSK--GP----AVRATRAQIDKVLYRKAMRNALENQPNLSLFQGEVEDLILEDNDEIKGVV---TQDGLK--FRA  143 (617)
T ss_pred             --ecccCC--CC----cccccHHhCCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEEecCCcEEEEE---ECCCCE--EEC
Confidence              000000  00    000111356777788888776653  554455678887654333334454   456764  899


Q ss_pred             cEEEeccCCch
Q 014324          161 NLLVAADGCLS  171 (426)
Q Consensus       161 d~vI~AdG~~S  171 (426)
                      +.||.|+|.++
T Consensus       144 d~VILATGtfL  154 (617)
T TIGR00136       144 KAVIITTGTFL  154 (617)
T ss_pred             CEEEEccCccc
Confidence            99999999995

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=98.87  E-value=1.7e-08  Score=99.75  Aligned_cols=41  Identities=22%  Similarity=0.201  Sum_probs=36.8

Q ss_pred             CCCCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324            2 EKKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP   42 (426)
Q Consensus         2 ~~~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~   42 (426)
                      |.|..+||+||||||+|+++|+.|+++|.+|+|||+...++
T Consensus         1 ~~~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~G   41 (461)
T PRK05249          1 MHMYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVG   41 (461)
T ss_pred             CCCccccEEEECCCHHHHHHHHHHHhCCCEEEEEecccccc
Confidence            34577999999999999999999999999999999976654

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=98.87  E-value=3.6e-08  Score=99.86  Aligned_cols=51  Identities=16%  Similarity=0.238  Sum_probs=37.8

Q ss_pred             Ce-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCchhh
Q 014324          123 EI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSI  173 (426)
Q Consensus       123 ~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~v  173 (426)
                      ++ +++++.++++..++++..+-|...+..+|+...+.|+.||.|+|..+.+
T Consensus       147 gV~i~~~t~v~~Li~dd~grV~GV~~~~~~~g~~~~i~AkaVVLATGG~g~~  198 (603)
T TIGR01811       147 LVEKYEGWEMLDIIVVDGNRARGIIARNLVTGEIETHSADAVILATGGYGNV  198 (603)
T ss_pred             CcEEEeCcEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCcCc
Confidence            67 9999999999865443334455444456776678999999999998764

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.87  E-value=1.7e-08  Score=99.69  Aligned_cols=38  Identities=26%  Similarity=0.320  Sum_probs=34.5

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP   42 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~   42 (426)
                      .+|||+||||||+|+.+|..|++.|.+|+|+|+.+.++
T Consensus         3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~G   40 (471)
T PRK06467          3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLG   40 (471)
T ss_pred             ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCccc
Confidence            45999999999999999999999999999999976543

>PRK06175 L-aspartate oxidase; Provisional

Probab=98.86  E-value=2.3e-08  Score=97.49  Aligned_cols=38  Identities=21%  Similarity=0.284  Sum_probs=33.7

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPT   43 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~   43 (426)
                      ..+||+|||+|.|||+||+.++ .|.+|+|+||.+..+.
T Consensus         3 ~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg   40 (433)
T PRK06175          3 LYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNEC   40 (433)
T ss_pred             ccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCC
Confidence            4689999999999999999985 7999999999987653

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=98.85  E-value=4.3e-08  Score=100.13  Aligned_cols=41  Identities=27%  Similarity=0.358  Sum_probs=36.6

Q ss_pred             CCCCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324            2 EKKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP   42 (426)
Q Consensus         2 ~~~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~   42 (426)
                      |.+..+||+|||||.|||++|+.+++.|.+|+|+||.+..+
T Consensus         1 ~~~~~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~~   41 (657)
T PRK08626          1 MKIIYTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKR   41 (657)
T ss_pred             CCceeccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCCC
Confidence            34467899999999999999999999999999999987754

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=98.84  E-value=5.6e-06  Score=82.01  Aligned_cols=60  Identities=18%  Similarity=0.298  Sum_probs=44.7

Q ss_pred             cEEEEcCChHHHHHHHHHHHc------CCcEEEEcccCCCCCCC----------CCcce--eccChhHHHHHHHHhcC
Q 014324            8 KAVIVGGSIAGISCAHALLRA------GWDVVVLEKAGGPPTGS----------PTGAG--LGLDRPAQRIIQSWLNG   67 (426)
Q Consensus         8 ~V~IvGaG~aGl~~A~~L~~~------G~~v~v~E~~~~~~~~~----------~~~~~--~~l~~~~~~~l~~~~~~   67 (426)
                      +|+|||||+|||++|+.|++.      |++|+|+|+++.++...          ..|..  ..-.+...++++++|+.
T Consensus         3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~~~g~~~e~G~~~i~~~~~~~~~l~~~lgl~   80 (463)
T PRK12416          3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEEKDFIMESGADSIVARNEHVMPLVKDLNLE   80 (463)
T ss_pred             eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEeeCCEEEecCcHHHhcCCHHHHHHHHHcCCc
Confidence            699999999999999999986      48999999999886521          11211  11235567888888863

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=98.83  E-value=5.7e-08  Score=95.56  Aligned_cols=38  Identities=21%  Similarity=0.330  Sum_probs=33.3

Q ss_pred             CCCccEEEEcCChHHHHHHHHHHHc-C-CcEEEEcccCCC
Q 014324            4 KEKGKAVIVGGSIAGISCAHALLRA-G-WDVVVLEKAGGP   41 (426)
Q Consensus         4 ~~~~~V~IvGaG~aGl~~A~~L~~~-G-~~v~v~E~~~~~   41 (426)
                      ...+||+|||||+.|+++|+.|++. + .+|+|+||...+
T Consensus        43 ~~~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~~~   82 (497)
T PTZ00383         43 SDVYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRSDF   82 (497)
T ss_pred             CCcccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCcch
Confidence            3568999999999999999999996 4 699999998643

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=98.83  E-value=3e-08  Score=99.18  Aligned_cols=112  Identities=16%  Similarity=0.151  Sum_probs=72.5

Q ss_pred             CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecc
Q 014324            4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQ   83 (426)
Q Consensus         4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~   83 (426)
                      ...+||+||||||||+++|..|++.|++|+|+|+.  ++      .-+. .        ..+.   +.     .+     
T Consensus       209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~--~G------G~~~-~--------~~~~---~~-----~~-----  258 (517)
T PRK15317        209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--FG------GQVL-D--------TMGI---EN-----FI-----  258 (517)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CC------Ceee-c--------cCcc---cc-----cC-----
Confidence            34689999999999999999999999999999753  21      1110 0        0000   00     00     


Q ss_pred             ccccccccccccccccCCCcchhccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeec
Q 014324           84 NQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGN  161 (426)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d  161 (426)
                           +              +.......+.+.|.+.+. .++ +++++++.++...+  ..++++   ..+|+.  +++|
T Consensus       259 -----~--------------~~~~~~~~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~--~~~~V~---~~~g~~--i~a~  312 (517)
T PRK15317        259 -----S--------------VPETEGPKLAAALEEHVKEYDVDIMNLQRASKLEPAA--GLIEVE---LANGAV--LKAK  312 (517)
T ss_pred             -----C--------------CCCCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecC--CeEEEE---ECCCCE--EEcC
Confidence                 0              000112345555555544 367 88899999998643  345555   456654  8999


Q ss_pred             EEEeccCCch
Q 014324          162 LLVAADGCLS  171 (426)
Q Consensus       162 ~vI~AdG~~S  171 (426)
                      .||.|+|..+
T Consensus       313 ~vViAtG~~~  322 (517)
T PRK15317        313 TVILATGARW  322 (517)
T ss_pred             EEEECCCCCc
Confidence            9999999975

>PRK08401 L-aspartate oxidase; Provisional

Probab=98.82  E-value=3.9e-08  Score=97.01  Aligned_cols=34  Identities=35%  Similarity=0.571  Sum_probs=32.3

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      +||+|||||+|||++|+.+++.|.+|+|+||...
T Consensus         2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~   35 (466)
T PRK08401          2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIK   35 (466)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            6999999999999999999999999999999864

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.82  E-value=3.3e-08  Score=97.67  Aligned_cols=38  Identities=24%  Similarity=0.259  Sum_probs=34.2

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP   42 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~   42 (426)
                      .+|||+||||||+|+++|..++++|.+|+|+|++..++
T Consensus         2 ~~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~G   39 (466)
T PRK06115          2 ASYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLG   39 (466)
T ss_pred             CcccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCcee
Confidence            45999999999999999999999999999999865543

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=98.80  E-value=3.2e-08  Score=94.80  Aligned_cols=35  Identities=34%  Similarity=0.503  Sum_probs=32.8

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP   41 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   41 (426)
                      +||+|||||++|+++|+.|+++|.+|+|+|+....
T Consensus         1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~~   35 (365)
T TIGR03364         1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSRA   35 (365)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence            58999999999999999999999999999998753

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PRK14694 putative mercuric reductase; Provisional

Probab=98.79  E-value=1.1e-07  Score=94.09  Aligned_cols=39  Identities=15%  Similarity=0.247  Sum_probs=36.9

Q ss_pred             CCCCCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccC
Q 014324            1 MEKKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAG   39 (426)
Q Consensus         1 m~~~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~   39 (426)
                      ||...++||+||||||+|+++|..|++.|.+|+|||+..
T Consensus         1 ~~~~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~   39 (468)
T PRK14694          1 MMSDNNLHIAVIGSGGSAMAAALKATERGARVTLIERGT   39 (468)
T ss_pred             CCCCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEccc
Confidence            888889999999999999999999999999999999863

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=98.78  E-value=3.7e-08  Score=97.22  Aligned_cols=36  Identities=31%  Similarity=0.425  Sum_probs=33.0

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHc--CCcEEEEcccCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRA--GWDVVVLEKAGG   40 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~--G~~v~v~E~~~~   40 (426)
                      .+.||+|||||++|+++|+.|+++  |.+|+|+|+...
T Consensus        23 ~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~~   60 (460)
T TIGR03329        23 TQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLC   60 (460)
T ss_pred             ceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCcc
Confidence            357999999999999999999998  899999999764

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>PLN02612 phytoene desaturase

Probab=98.78  E-value=2.4e-06  Score=86.19  Aligned_cols=63  Identities=27%  Similarity=0.248  Sum_probs=48.6

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCC-----------Ccc--eeccChhHHHHHHHHhcC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSP-----------TGA--GLGLDRPAQRIIQSWLNG   67 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~-----------~~~--~~~l~~~~~~~l~~~~~~   67 (426)
                      ...+|+|||||++||++|+.|+++|++|+|+|++..++....           .|.  .....++..++++++|+.
T Consensus        92 ~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~s~~~~~G~~~D~G~h~~~g~~~~~~~ll~elG~~  167 (567)
T PLN02612         92 KPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNVQNLFGELGIN  167 (567)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcceeeEcCCCCEEcCCceEEeCCCchHHHHHHHhCCc
Confidence            357899999999999999999999999999999987653110           111  122457788999999883

>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]

Probab=98.76  E-value=1.6e-06  Score=77.99  Aligned_cols=159  Identities=16%  Similarity=0.170  Sum_probs=88.8

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCC-CCcceeccC---------hhHHHHHHHHhcCCchhhhc
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGS-PTGAGLGLD---------RPAQRIIQSWLNGRPHLLHL   74 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~-~~~~~~~l~---------~~~~~~l~~~~~~~~~~~~~   74 (426)
                      ...||+|||||+-|+++|+.|+|+|.++.++|+-+.+...+ ..|..=.+-         .-..++++.|-..  +.+..
T Consensus         6 ~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~~--~~~~g   83 (399)
T KOG2820|consen    6 KSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWRNL--PEESG   83 (399)
T ss_pred             cceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHHHHHHhC--hhhhc
Confidence            45799999999999999999999999999999999886421 111110011         1223344444221  11111


Q ss_pred             cCcceeeccccccc------------------------ccccccccccc----C------CCcchhccHHHHHHHHHhcC
Q 014324           75 ATVPLTIDQNQATD------------------------NAKVTRTLARD----D------NFNFRAAHWADLHGLLYNAL  120 (426)
Q Consensus        75 ~~~~~~~~~~~~~~------------------------~~~~~~~~~~~----~------~~~~~~~~r~~l~~~L~~~~  120 (426)
                      .............+                        ++.+.+.....    +      ......+.-..-.+.|+..+
T Consensus        84 ~~~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G~~n~~gGvi~a~kslk~~~~~~  163 (399)
T KOG2820|consen   84 VKLHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQGVVNESGGVINAAKSLKALQDKA  163 (399)
T ss_pred             eeecccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhCCCCccCCcchhhcccccccEeeHHHHHHHHHHHH
Confidence            00100000000000                        00000000000    0      00112234445556677766


Q ss_pred             CC-Ce-eEeeeeEEEEEEecC-CceEEEEEEeccCCceEEEeecEEEeccCCc
Q 014324          121 PP-EI-FLRGHQYLSFCISEV-KTTVTVKAKVLQTDEVIEIKGNLLVAADGCL  170 (426)
Q Consensus       121 ~~-~~-i~~~~~v~~~~~~~~-~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~  170 (426)
                      ++ |+ ++.+.+++.+...++ +..+.|+   +.+|..  +.++-+|.+.|++
T Consensus       164 ~~~G~i~~dg~~v~~~~~~~e~~~~v~V~---Tt~gs~--Y~akkiI~t~GaW  211 (399)
T KOG2820|consen  164 RELGVIFRDGEKVKFIKFVDEEGNHVSVQ---TTDGSI--YHAKKIIFTVGAW  211 (399)
T ss_pred             HHcCeEEecCcceeeEeeccCCCceeEEE---eccCCe--eecceEEEEecHH
Confidence            64 77 999999999886543 4456666   677876  7899999999985

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=98.75  E-value=2.8e-07  Score=92.09  Aligned_cols=38  Identities=21%  Similarity=0.323  Sum_probs=34.8

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPT   43 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~   43 (426)
                      ..+||+|||+| +||++|+.+++.|.+|+|+||....+.
T Consensus         6 ~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg   43 (513)
T PRK12837          6 EEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGG   43 (513)
T ss_pred             CccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence            46899999999 999999999999999999999987553

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=98.75  E-value=1.6e-07  Score=94.67  Aligned_cols=36  Identities=28%  Similarity=0.509  Sum_probs=34.1

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      .++||+|||+|.|||++|+.+++.|.+|+|+||.+.
T Consensus         3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~   38 (549)
T PRK12834          3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENE   38 (549)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            568999999999999999999999999999999993

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.73  E-value=2.4e-07  Score=98.37  Aligned_cols=36  Identities=31%  Similarity=0.407  Sum_probs=33.8

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ..+||+|||||.|||++|+.+++.|.+|+|+||...
T Consensus        12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~   47 (897)
T PRK13800         12 LDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV   47 (897)
T ss_pred             eecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence            358999999999999999999999999999999885

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=98.73  E-value=1.5e-08  Score=71.05  Aligned_cols=32  Identities=38%  Similarity=0.599  Sum_probs=29.8

Q ss_pred             EEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324           11 IVGGSIAGISCAHALLRAGWDVVVLEKAGGPP   42 (426)
Q Consensus        11 IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~   42 (426)
                      |||||++||++|+.|+++|++|+|||+.+.++
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~G   32 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLG   32 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCcccC
Confidence            89999999999999999999999999999875

...

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.72  E-value=8e-08  Score=94.33  Aligned_cols=36  Identities=25%  Similarity=0.286  Sum_probs=33.9

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ++|||+||||||||+++|..|++.|.+|+|+||.+.
T Consensus         2 ~~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~   37 (438)
T PRK07251          2 LTYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKA   37 (438)
T ss_pred             CccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCc
Confidence            469999999999999999999999999999999875

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.72  E-value=1.8e-07  Score=94.29  Aligned_cols=39  Identities=31%  Similarity=0.348  Sum_probs=36.0

Q ss_pred             CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324            4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP   42 (426)
Q Consensus         4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~   42 (426)
                      ...+||+|||+|++|+++|+.++++|.+|+|+||....+
T Consensus         5 ~~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~g   43 (557)
T PRK07843          5 VQEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYG   43 (557)
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCC
Confidence            457899999999999999999999999999999998764

>PRK07395 L-aspartate oxidase; Provisional

Probab=98.71  E-value=1.2e-07  Score=95.09  Aligned_cols=159  Identities=14%  Similarity=0.114  Sum_probs=83.0

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCc-ceec--cCh--hHHHHHHHH---h-----------
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTG-AGLG--LDR--PAQRIIQSW---L-----------   65 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~-~~~~--l~~--~~~~~l~~~---~-----------   65 (426)
                      ..+||+|||+|.|||+||+.++ .|.+|+|+||.+..+..+... .++.  +.+  .....++.+   +           
T Consensus         8 ~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~gg~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~~~~d~~lv~~   86 (553)
T PRK07395          8 SQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKTSASDWAQGGIAAAIAPDDSPKLHYEDTLKAGAGLCDPEAVRF   86 (553)
T ss_pred             ccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCCCchhhhcccceecccCCCCHHHHHHHHHHhcCCCCCHHHHHH
Confidence            4689999999999999999996 599999999998754322111 1221  111  111111111   0           


Q ss_pred             -----cCCchhhhccCcceeecccc----ccccccccccccccCCCcchhccHHHHHHHHHhcCC--CCe-eEeeeeEEE
Q 014324           66 -----NGRPHLLHLATVPLTIDQNQ----ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALP--PEI-FLRGHQYLS  133 (426)
Q Consensus        66 -----~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~--~~~-i~~~~~v~~  133 (426)
                           ....+.+.+.+.++......    ...+....+....     ..... ..+...|.+.+.  .++ |+.++.+++
T Consensus        87 ~~~~s~~~i~wL~~~Gv~f~~~~~~~~~~~~~g~s~~r~~~~-----~d~~G-~~i~~~L~~~~~~~~gi~i~~~~~v~~  160 (553)
T PRK07395         87 LVEQAPEAIASLVEMGVAFDRHGQHLALTLEAAHSRPRVLHA-----ADTTG-RAIVTTLTEQVLQRPNIEIISQALALS  160 (553)
T ss_pred             HHHHHHHHHHHHHhcCCeeecCCCceeeecccccccCeEEEe-----CCCCh-HHHHHHHHHHHhhcCCcEEEECcChhh
Confidence                 00011222333332210000    0000000000000     00011 345555666553  378 999999999


Q ss_pred             EEEecC-CceEEEEEEeccCCceEEEeecEEEeccCCchh
Q 014324          134 FCISEV-KTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSS  172 (426)
Q Consensus       134 ~~~~~~-~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~  172 (426)
                      +..+++ +..+-+..  ..+|....+.++-||.|+|..+.
T Consensus       161 Li~~~~~g~v~Gv~~--~~~g~~~~i~AkaVILATGG~~~  198 (553)
T PRK07395        161 LWLEPETGRCQGISL--LYQGQITWLRAGAVILATGGGGQ  198 (553)
T ss_pred             heecCCCCEEEEEEE--EECCeEEEEEcCEEEEcCCCCcc
Confidence            986532 32233333  24666666899999999999764

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=98.71  E-value=1.2e-07  Score=94.06  Aligned_cols=34  Identities=26%  Similarity=0.362  Sum_probs=32.4

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEccc
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKA   38 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~   38 (426)
                      ..|||+||||||+|+++|..|++.|.+|+|+|+.
T Consensus         3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~   36 (472)
T PRK05976          3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG   36 (472)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc
Confidence            4699999999999999999999999999999986

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.70  E-value=2.5e-07  Score=93.58  Aligned_cols=39  Identities=23%  Similarity=0.320  Sum_probs=35.6

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPT   43 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~   43 (426)
                      .++||+|||+|++||++|+.++++|.+|+|+||.+..+.
T Consensus        10 ~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG   48 (584)
T PRK12835         10 REVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGG   48 (584)
T ss_pred             CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCc
Confidence            358999999999999999999999999999999987543

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=98.70  E-value=1.2e-07  Score=94.32  Aligned_cols=168  Identities=19%  Similarity=0.210  Sum_probs=90.1

Q ss_pred             CCCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCc-ceec--cC--h----hHHHHH-HHH--------
Q 014324            3 KKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTG-AGLG--LD--R----PAQRII-QSW--------   64 (426)
Q Consensus         3 ~~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~-~~~~--l~--~----~~~~~l-~~~--------   64 (426)
                      ...++||+|||||.|||.+|+.++..|++|+|+||....+..+... .|+.  +.  .    .+.+.+ ...        
T Consensus         3 ~~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~t~~a~gG~~a~~~~~~~~~~ds~e~~~~dtvkg~d~l~   82 (562)
T COG1053           3 TIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTVAAQGGINAALGNTVDVEGDSPELHFYDTVKGGDGLG   82 (562)
T ss_pred             ccccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCchhhhcccccccccCcccccCCCHHHHHHHHHhccCCcC
Confidence            3467899999999999999999999999999999999877432110 1111  11  0    011111 000        


Q ss_pred             -----------hcCCchhhhccCcceeecccccccccc----ccccccccCCCcchhccHHHHHHHHHhcC-C-CCe-eE
Q 014324           65 -----------LNGRPHLLHLATVPLTIDQNQATDNAK----VTRTLARDDNFNFRAAHWADLHGLLYNAL-P-PEI-FL  126 (426)
Q Consensus        65 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~r~~l~~~L~~~~-~-~~~-i~  126 (426)
                                 .+...+.+...+.++.    ...+|..    ++........+...... ..+...|.+.+ + .++ ++
T Consensus        83 dqd~i~~~~~~ap~~v~~Le~~G~~f~----r~~~G~~~~r~fgg~~~~rt~~~~~~tG-~~ll~~L~~~~~~~~~~~~~  157 (562)
T COG1053          83 DQDAVEAFADEAPEAVDELEKWGVPFS----RTEDGRIYQRRFGGHSKPRTCFAADKTG-HELLHTLYEQLLKFSGIEIF  157 (562)
T ss_pred             CHHHHHHHHHhhHHHHHHHHHhCCCcc----cCCCccccccccCCcCCCcceecCCCCc-HHHHHHHHHHHHHhhcchhh
Confidence                       0000112222222211    1111110    00000000000011111 22334444433 2 244 67


Q ss_pred             eeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCchhhhh
Q 014324          127 RGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSIRQ  175 (426)
Q Consensus       127 ~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~vR~  175 (426)
                      -+..++++..+++.....+...+..+|+...+.++-||.|+|....+..
T Consensus       158 ~~~~~~~l~~~~~~~v~Gvv~~~~~~g~~~~~~akavilaTGG~g~~~~  206 (562)
T COG1053         158 DEYFVLDLLVDDGGGVAGVVARDLRTGELYVFRAKAVILATGGAGRLYP  206 (562)
T ss_pred             hhhhhhhheecCCCcEEEEEEEEecCCcEEEEecCcEEEccCCceEEEe
Confidence            7788888876555434556666688898888999999999999884433

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=98.70  E-value=4.2e-07  Score=98.85  Aligned_cols=40  Identities=30%  Similarity=0.435  Sum_probs=36.1

Q ss_pred             CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 014324            4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPT   43 (426)
Q Consensus         4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~   43 (426)
                      +.++||+|||+|.||++||+.+++.|.+|+|+||....+.
T Consensus       407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG  446 (1167)
T PTZ00306        407 SLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGG  446 (1167)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCC
Confidence            3468999999999999999999999999999999987653

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=98.70  E-value=1.4e-07  Score=94.33  Aligned_cols=112  Identities=17%  Similarity=0.172  Sum_probs=69.6

Q ss_pred             CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecc
Q 014324            4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQ   83 (426)
Q Consensus         4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~   83 (426)
                      ...+||+||||||||+++|..|++.|++|+|+|..  ++      .-+ ..        ..+.      ...        
T Consensus       210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~--~G------G~~-~~--------~~~~------~~~--------  258 (515)
T TIGR03140       210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAER--IG------GQV-KD--------TVGI------ENL--------  258 (515)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CC------Ccc-cc--------CcCc------ccc--------
Confidence            34689999999999999999999999999999742  11      101 00        0000      000        


Q ss_pred             ccccccccccccccccCCCcchhccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeec
Q 014324           84 NQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGN  161 (426)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d  161 (426)
                      .    +    ..          ......+.+.+.+.++ .++ ++.+++|.++..++  ..+.++   .++|+.  +++|
T Consensus       259 ~----~----~~----------~~~~~~l~~~l~~~l~~~gv~i~~~~~V~~I~~~~--~~~~v~---~~~g~~--i~~d  313 (515)
T TIGR03140       259 I----S----VP----------YTTGSQLAANLEEHIKQYPIDLMENQRAKKIETED--GLIVVT---LESGEV--LKAK  313 (515)
T ss_pred             c----c----cC----------CCCHHHHHHHHHHHHHHhCCeEEcCCEEEEEEecC--CeEEEE---ECCCCE--EEeC
Confidence            0    0    00          0011333344444333 367 88899999987533  345554   456654  8999


Q ss_pred             EEEeccCCch
Q 014324          162 LLVAADGCLS  171 (426)
Q Consensus       162 ~vI~AdG~~S  171 (426)
                      .||.|+|...
T Consensus       314 ~lIlAtGa~~  323 (515)
T TIGR03140       314 SVIVATGARW  323 (515)
T ss_pred             EEEECCCCCc
Confidence            9999999874

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.69  E-value=1.3e-07  Score=93.45  Aligned_cols=35  Identities=20%  Similarity=0.306  Sum_probs=33.1

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAG   39 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~   39 (426)
                      ..|||+||||||+|+++|..|+++|++|+|+|+..
T Consensus         3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~   37 (462)
T PRK06416          3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK   37 (462)
T ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc
Confidence            46899999999999999999999999999999876

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=98.68  E-value=3.9e-07  Score=91.99  Aligned_cols=50  Identities=10%  Similarity=0.071  Sum_probs=37.3

Q ss_pred             Ce-eEeeeeEEEEEEecC--CceEEEEEEeccCCceEEEeecEEEeccCCchh
Q 014324          123 EI-FLRGHQYLSFCISEV--KTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSS  172 (426)
Q Consensus       123 ~~-i~~~~~v~~~~~~~~--~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~  172 (426)
                      ++ ++.++.++++..+++  +..+-|...+..+|+...+.|+.||.|+|..+.
T Consensus       140 ~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~  192 (614)
T TIGR02061       140 LGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKAKTVIVAAGGAVN  192 (614)
T ss_pred             CCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEECCEEEECCCcccc
Confidence            35 889999999987542  334445554556787777999999999999873

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=98.67  E-value=8.8e-08  Score=94.17  Aligned_cols=33  Identities=18%  Similarity=0.317  Sum_probs=31.7

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEccc
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKA   38 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~   38 (426)
                      +|||+||||||+|+++|+.++++|++|+|+|+.
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~   34 (446)
T TIGR01424         2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP   34 (446)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Confidence            589999999999999999999999999999984

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=98.67  E-value=5.6e-07  Score=91.21  Aligned_cols=43  Identities=30%  Similarity=0.377  Sum_probs=38.8

Q ss_pred             CCCCCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 014324            1 MEKKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPT   43 (426)
Q Consensus         1 m~~~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~   43 (426)
                      |+...++||+|||+|++|+++|+.++++|.+|+|+||....+.
T Consensus         4 ~~~~~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG   46 (574)
T PRK12842          4 MTNELTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGG   46 (574)
T ss_pred             cCcCCCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCC
Confidence            5566789999999999999999999999999999999987653

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=98.67  E-value=2.1e-07  Score=93.85  Aligned_cols=35  Identities=34%  Similarity=0.452  Sum_probs=32.4

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAG   39 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~   39 (426)
                      ..+||+|||||||||++|..|+++|++|+|||+..
T Consensus         3 ~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~   37 (555)
T TIGR03143         3 EIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDD   37 (555)
T ss_pred             CcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Confidence            34899999999999999999999999999999853

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=98.66  E-value=2.9e-06  Score=82.04  Aligned_cols=38  Identities=42%  Similarity=0.509  Sum_probs=35.4

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP   42 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~   42 (426)
                      .++||+|||||++|+++|+.|+++|.+|+|+|+.....
T Consensus         3 ~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~~   40 (387)
T COG0665           3 MKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGG   40 (387)
T ss_pred             CcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccCC
Confidence            56899999999999999999999999999999998754

>PRK10262 thioredoxin reductase; Provisional

Probab=98.66  E-value=2.3e-07  Score=87.21  Aligned_cols=38  Identities=26%  Similarity=0.338  Sum_probs=35.1

Q ss_pred             CCCCCCccEEEEcCChHHHHHHHHHHHcCCcEEEEccc
Q 014324            1 MEKKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKA   38 (426)
Q Consensus         1 m~~~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~   38 (426)
                      |...+.+||+|||||||||++|..|+++|++|++||+.
T Consensus         1 ~~~~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~   38 (321)
T PRK10262          1 MGTTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGM   38 (321)
T ss_pred             CCCCCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee
Confidence            66678899999999999999999999999999999964

>PRK12839 hypothetical protein; Provisional

Probab=98.66  E-value=6.4e-07  Score=90.32  Aligned_cols=40  Identities=33%  Similarity=0.351  Sum_probs=36.1

Q ss_pred             CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 014324            4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPT   43 (426)
Q Consensus         4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~   43 (426)
                      ...+||+|||+|++|+++|+.+++.|.+|+|+||...++.
T Consensus         6 ~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg   45 (572)
T PRK12839          6 THTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGG   45 (572)
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence            3568999999999999999999999999999999877653

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=98.66  E-value=8.8e-08  Score=90.00  Aligned_cols=153  Identities=13%  Similarity=0.039  Sum_probs=79.5

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcC-CcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcc------
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAG-WDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVP------   78 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G-~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~------   78 (426)
                      .+|+|+||.||++|++|++|...+ .++..|||++....+    .|+.+....+      ..   ..++.....      
T Consensus         2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh----~gmll~~~~~------q~---~fl~Dlvt~~~P~s~   68 (341)
T PF13434_consen    2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWH----PGMLLPGARM------QV---SFLKDLVTLRDPTSP   68 (341)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TT----GGG--SS-B-------SS----TTSSSSTTT-TTST
T ss_pred             ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcC----CccCCCCCcc------cc---ccccccCcCcCCCCc
Confidence            479999999999999999999886 999999999986532    2332222111      11   111111111      


Q ss_pred             eeeccccccccccccccccccCCCcchhccHHHHHHHHHhcCCC-Ce-eEeeeeEEEEEEecCC--ceEEEEEEeccCCc
Q 014324           79 LTIDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPP-EI-FLRGHQYLSFCISEVK--TTVTVKAKVLQTDE  154 (426)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~-~~-i~~~~~v~~~~~~~~~--~~v~v~~~~~~~g~  154 (426)
                      ..+...-...+. +...    ...+...+.|..+.+++.-.++. .. ++++++|++|+...+.  ..+.|+.++ .+|+
T Consensus        69 ~sflnYL~~~~r-l~~f----~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~-~~g~  142 (341)
T PF13434_consen   69 FSFLNYLHEHGR-LYEF----YNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRD-SDGD  142 (341)
T ss_dssp             TSHHHHHHHTT--HHHH----HHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEE-TTS-
T ss_pred             ccHHHHHHHcCC-hhhh----hhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEee-cCCC
Confidence            100000001111 0000    01123456788888888765554 34 8999999999987654  346666554 6777


Q ss_pred             eEEEeecEEEeccCCchhhhhhh
Q 014324          155 VIEIKGNLLVAADGCLSSIRQSF  177 (426)
Q Consensus       155 ~~~~~~d~vI~AdG~~S~vR~~l  177 (426)
                      ..++.|+-||.|.|....+-..+
T Consensus       143 ~~~~~ar~vVla~G~~P~iP~~~  165 (341)
T PF13434_consen  143 GETYRARNVVLATGGQPRIPEWF  165 (341)
T ss_dssp             EEEEEESEEEE----EE---GGG
T ss_pred             eeEEEeCeEEECcCCCCCCCcch
Confidence            77899999999999554444443

>PRK09897 hypothetical protein; Provisional

Probab=98.65  E-value=2.1e-07  Score=92.09  Aligned_cols=36  Identities=28%  Similarity=0.390  Sum_probs=31.9

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcC--CcEEEEcccCCCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAG--WDVVVLEKAGGPP   42 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G--~~v~v~E~~~~~~   42 (426)
                      ++|+||||||+|+++|..|.+.+  ++|+|||++..++
T Consensus         2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G   39 (534)
T PRK09897          2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAG   39 (534)
T ss_pred             CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCC
Confidence            48999999999999999998764  5899999988765

>PRK06370 mercuric reductase; Validated

Probab=98.64  E-value=2.4e-07  Score=91.61  Aligned_cols=36  Identities=22%  Similarity=0.336  Sum_probs=33.4

Q ss_pred             CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccC
Q 014324            4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAG   39 (426)
Q Consensus         4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~   39 (426)
                      |.++||+||||||+|+++|+.|+++|++|+|+|+..
T Consensus         3 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~   38 (463)
T PRK06370          3 AQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGL   38 (463)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCc
Confidence            356999999999999999999999999999999864

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=98.64  E-value=3.9e-07  Score=75.80  Aligned_cols=31  Identities=26%  Similarity=0.498  Sum_probs=27.3

Q ss_pred             EEEcCChHHHHHHHHHHHc-----CCcEEEEcccCC
Q 014324           10 VIVGGSIAGISCAHALLRA-----GWDVVVLEKAGG   40 (426)
Q Consensus        10 ~IvGaG~aGl~~A~~L~~~-----G~~v~v~E~~~~   40 (426)
                      +||||||+|++++..|.++     ..+|+|||+.+.
T Consensus         1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~   36 (156)
T PF13454_consen    1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF   36 (156)
T ss_pred             CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence            5999999999999999887     579999999544

>PLN02507 glutathione reductase

Probab=98.63  E-value=2.9e-07  Score=91.49  Aligned_cols=33  Identities=18%  Similarity=0.199  Sum_probs=31.4

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEccc
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKA   38 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~   38 (426)
                      +|||+||||||+|+.+|..+++.|.+|+|+|+.
T Consensus        25 ~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~   57 (499)
T PLN02507         25 DFDLFVIGAGSGGVRAARFSANFGAKVGICELP   57 (499)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            589999999999999999999999999999973

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=98.62  E-value=3e-07  Score=90.05  Aligned_cols=31  Identities=39%  Similarity=0.610  Sum_probs=29.2

Q ss_pred             EEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324           11 IVGGSIAGISCAHALLRAGWDVVVLEKAGGP   41 (426)
Q Consensus        11 IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   41 (426)
                      |||+|.+|+++|+.++++|.+|+|+||.+..
T Consensus         1 VVG~G~AGl~AA~~Aa~~Ga~V~vlEK~~~~   31 (432)
T TIGR02485         1 VIGGGLAGLCAAIEARRAGASVLLLEAAPRA   31 (432)
T ss_pred             CCcccHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence            7999999999999999999999999998753

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=98.61  E-value=3.7e-07  Score=86.16  Aligned_cols=66  Identities=18%  Similarity=0.167  Sum_probs=50.8

Q ss_pred             hccHHHHHHHHHhcCC--CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCchh
Q 014324          106 AAHWADLHGLLYNALP--PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSS  172 (426)
Q Consensus       106 ~~~r~~l~~~L~~~~~--~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~  172 (426)
                      .++.+.|-+.|.+.+.  .++ ++++++|++++...+ ..|.|++++..+|+..++++++|+..-|++|-
T Consensus       177 DVnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~d-g~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL  245 (488)
T PF06039_consen  177 DVNFGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGD-GRWEVKVKDLKTGEKREVRAKFVFVGAGGGAL  245 (488)
T ss_pred             cccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCC-CCEEEEEEecCCCCeEEEECCEEEECCchHhH
Confidence            3555666666666553  367 999999999997544 45777777778888889999999999998875

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=98.61  E-value=3.2e-07  Score=90.14  Aligned_cols=34  Identities=21%  Similarity=0.367  Sum_probs=32.2

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAG   39 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~   39 (426)
                      +|||+||||||+|+++|+.|++.|++|+|+||..
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~   35 (450)
T TIGR01421         2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAKK   35 (450)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEecccc
Confidence            5899999999999999999999999999999853

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK07512 L-aspartate oxidase; Provisional

Probab=98.60  E-value=3.7e-07  Score=91.09  Aligned_cols=35  Identities=43%  Similarity=0.502  Sum_probs=31.3

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP   41 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   41 (426)
                      ..+||+|||+|.|||++|+.++  |.+|+|+||.+..
T Consensus         8 ~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~~   42 (513)
T PRK07512          8 LTGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPLG   42 (513)
T ss_pred             CcCCEEEECchHHHHHHHHHhC--cCCEEEEECCCCC
Confidence            4589999999999999999997  5699999999873

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=98.60  E-value=3.1e-07  Score=90.92  Aligned_cols=36  Identities=25%  Similarity=0.296  Sum_probs=32.9

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP   42 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~   42 (426)
                      .|||+||||||+|+++|..|+++|.+|+|+|+ ..++
T Consensus         1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~G   36 (461)
T TIGR01350         1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLG   36 (461)
T ss_pred             CccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCC
Confidence            38999999999999999999999999999999 5543

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=98.57  E-value=4.3e-07  Score=90.02  Aligned_cols=33  Identities=21%  Similarity=0.324  Sum_probs=31.7

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcc
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEK   37 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~   37 (426)
                      ..|||+||||||+|+++|+.+++.|.+|+|+|+
T Consensus         3 ~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~   35 (475)
T PRK06327          3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEA   35 (475)
T ss_pred             cceeEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence            469999999999999999999999999999998

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=98.56  E-value=4.4e-07  Score=91.95  Aligned_cols=38  Identities=26%  Similarity=0.323  Sum_probs=35.0

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP   42 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~   42 (426)
                      ..+||+|||+|++|+++|+.++++|.+|+||||.+..+
T Consensus        11 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~g   48 (581)
T PRK06134         11 LECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFG   48 (581)
T ss_pred             CccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence            46899999999999999999999999999999987654

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.56  E-value=1.3e-07  Score=82.35  Aligned_cols=33  Identities=45%  Similarity=0.731  Sum_probs=31.0

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            8 KAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         8 ~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ||+||||||||+++|..|++.|++|+|+|+.+.
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~   33 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPG   33 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSH
T ss_pred             CEEEEecHHHHHHHHHHHhcCCCeEEEEecccc
Confidence            799999999999999999999999999987765

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.55  E-value=2.1e-06  Score=86.58  Aligned_cols=38  Identities=26%  Similarity=0.355  Sum_probs=35.0

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP   42 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~   42 (426)
                      .++||+|||+|++|+++|+.++++|.+|+|+||....+
T Consensus         5 ~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~g   42 (557)
T PRK12844          5 ETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVG   42 (557)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence            36899999999999999999999999999999987654

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.55  E-value=6.5e-07  Score=88.59  Aligned_cols=34  Identities=24%  Similarity=0.313  Sum_probs=32.2

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEccc
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKA   38 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~   38 (426)
                      .++||+||||||+|+++|+.|++.|.+|+|+|+.
T Consensus         3 ~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~   36 (466)
T PRK07818          3 THYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK   36 (466)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence            3599999999999999999999999999999986

>PRK06116 glutathione reductase; Validated

Probab=98.54  E-value=3.8e-07  Score=89.90  Aligned_cols=34  Identities=24%  Similarity=0.408  Sum_probs=32.4

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEccc
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKA   38 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~   38 (426)
                      .+|||+||||||+|+++|+.|+++|++|+|+|+.
T Consensus         3 ~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~   36 (450)
T PRK06116          3 KDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK   36 (450)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            4699999999999999999999999999999986

>PTZ00058 glutathione reductase; Provisional

Probab=98.53  E-value=5.6e-07  Score=90.08  Aligned_cols=35  Identities=23%  Similarity=0.386  Sum_probs=33.0

Q ss_pred             CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEccc
Q 014324            4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKA   38 (426)
Q Consensus         4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~   38 (426)
                      ..+|||+||||||+|+++|..+++.|.+|+|+||.
T Consensus        46 ~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~   80 (561)
T PTZ00058         46 RMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD   80 (561)
T ss_pred             CccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc
Confidence            45689999999999999999999999999999986

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.53  E-value=1.9e-06  Score=86.75  Aligned_cols=38  Identities=24%  Similarity=0.337  Sum_probs=34.9

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPT   43 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~   43 (426)
                      ..+||+|||+| +|+++|+.+++.|.+|+|+||.+..+.
T Consensus        15 ~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG   52 (564)
T PRK12845         15 TTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGG   52 (564)
T ss_pred             ceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcC
Confidence            46899999999 899999999999999999999987664

>PRK13748 putative mercuric reductase; Provisional

Probab=98.53  E-value=5.1e-07  Score=91.64  Aligned_cols=34  Identities=18%  Similarity=0.303  Sum_probs=32.6

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEccc
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKA   38 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~   38 (426)
                      .++||+||||||+|+++|..|++.|.+|+|+|+.
T Consensus        97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~  130 (561)
T PRK13748         97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG  130 (561)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC
Confidence            4699999999999999999999999999999987

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=98.53  E-value=2.9e-07  Score=87.42  Aligned_cols=116  Identities=13%  Similarity=0.015  Sum_probs=68.9

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCC-CC---c-ceeccChhHHHHHHHHhcCCchhhhccCcceee
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGS-PT---G-AGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTI   81 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~-~~---~-~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~   81 (426)
                      .||+|||||++|+.+|+.|+++|++|+|+|+++.+.... ..   + ..+..+..+...+...|+. .+++...+...  
T Consensus         3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~s~a~~~~~~~ervca~Slgs~~ll~a~Gll-~~em~~lgsl~--   79 (436)
T PRK05335          3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKKTPAHHTDGFAELVCSNSFRSDSLTNAVGLL-KEEMRRLGSLI--   79 (436)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccCcccccCccccccccchhhhhhhHHhcCCch-HHHHHHhcchh--
Confidence            489999999999999999999999999999987663210 01   1 2334444555556666652 23333322210  


Q ss_pred             ccccccccccccccccccCCCcchhccHHHHHHHHHhcCCC--Ce-eEeeeeEEEEE
Q 014324           82 DQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPP--EI-FLRGHQYLSFC  135 (426)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~--~~-i~~~~~v~~~~  135 (426)
                          .....     ...........++|..+.+.|.+.++.  ++ ++ ..+|+++.
T Consensus        80 ----~~aad-----~~~vPA~gaLvvdR~~~~~~L~~~L~~~pnI~l~-~~eV~~l~  126 (436)
T PRK05335         80 ----MEAAD-----AHRVPAGGALAVDREGFSEYVTEALENHPLITVI-REEVTEIP  126 (436)
T ss_pred             ----eeccc-----ccCCCCccceecCHHHHHHHHHHHHHcCCCcEEE-ccchhccc
Confidence                00000     000011223467888899988887653  55 54 44666653

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=98.52  E-value=6.4e-07  Score=84.82  Aligned_cols=160  Identities=23%  Similarity=0.260  Sum_probs=87.8

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCC--Cc-ceeccC---------------------hhHHHHHHH
Q 014324            8 KAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSP--TG-AGLGLD---------------------RPAQRIIQS   63 (426)
Q Consensus         8 ~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~--~~-~~~~l~---------------------~~~~~~l~~   63 (426)
                      ||+|||+|.|||++|+.|.+. ++|+|+-|.+.....+.  +| -...+.                     +.+.+.+-.
T Consensus         9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~~~sS~~AQGGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~~aV~~iv~   87 (518)
T COG0029           9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLGESSSYWAQGGIAAALSEDDSPELHVADTLAAGAGLCDEEAVEFIVS   87 (518)
T ss_pred             cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCCCccchhhcCceEeeeCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence            999999999999999999998 99999999987642221  11 111111                     122222222


Q ss_pred             HhcCCchhhhccCcceeecccc-c----cccccccccccccCCCcchhccHHHHHHHHHhcCC--CCe-eEeeeeEEEEE
Q 014324           64 WLNGRPHLLHLATVPLTIDQNQ-A----TDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALP--PEI-FLRGHQYLSFC  135 (426)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~--~~~-i~~~~~v~~~~  135 (426)
                      -+....+.+...+.++...... +    ..+-.-.+++.... ...     ..+.+.|.+.++  .++ +..++.+.++.
T Consensus        88 ~~~~ai~~Li~~Gv~FDr~~~g~~~lt~EggHS~rRIlH~~~-~TG-----~~I~~~L~~~v~~~p~I~v~e~~~a~~li  161 (518)
T COG0029          88 EAPEAIEWLIDLGVPFDRDEDGRLHLTREGGHSRRRILHAAD-ATG-----KEIMTALLKKVRNRPNITVLEGAEALDLI  161 (518)
T ss_pred             hHHHHHHHHHHcCCCCcCCCCCceeeeeecccCCceEEEecC-Ccc-----HHHHHHHHHHHhcCCCcEEEecchhhhhh
Confidence            2221123344444443321110 0    00000011111111 111     456666777665  478 88888888887


Q ss_pred             EecCCceE-EEEEEeccCCceEEEeecEEEeccCCchhhhhh
Q 014324          136 ISEVKTTV-TVKAKVLQTDEVIEIKGNLLVAADGCLSSIRQS  176 (426)
Q Consensus       136 ~~~~~~~v-~v~~~~~~~g~~~~~~~d~vI~AdG~~S~vR~~  176 (426)
                      .+++. .+ -+.+. ..+++..++.++.||.|+|..+.+=+.
T Consensus       162 ~~~~~-~~~Gv~~~-~~~~~~~~~~a~~vVLATGG~g~ly~~  201 (518)
T COG0029         162 IEDGI-GVAGVLVL-NRNGELGTFRAKAVVLATGGLGGLYAY  201 (518)
T ss_pred             hcCCc-eEeEEEEe-cCCCeEEEEecCeEEEecCCCcccccc
Confidence            64442 23 33322 122245679999999999998876544

>KOG2853 consensus Possible oxidoreductase [General function prediction only]

Probab=98.51  E-value=1.8e-05  Score=71.25  Aligned_cols=41  Identities=34%  Similarity=0.398  Sum_probs=35.5

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHc----CCcEEEEcccCCCCCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRA----GWDVVVLEKAGGPPTGS   45 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~----G~~v~v~E~~~~~~~~~   45 (426)
                      .+.||+|||||.+|++.|..|+++    |++|+|+||+......+
T Consensus        85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqss  129 (509)
T KOG2853|consen   85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSS  129 (509)
T ss_pred             cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccccc
Confidence            357999999999999999999864    79999999998876533

>PRK14727 putative mercuric reductase; Provisional

Probab=98.49  E-value=6.2e-07  Score=88.97  Aligned_cols=38  Identities=21%  Similarity=0.176  Sum_probs=34.7

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP   42 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~   42 (426)
                      .++||+||||||+|+++|..|++.|.+|+|+|+...++
T Consensus        15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~G   52 (479)
T PRK14727         15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIG   52 (479)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcce
Confidence            46899999999999999999999999999999986553

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.49  E-value=1.3e-07  Score=93.77  Aligned_cols=40  Identities=33%  Similarity=0.439  Sum_probs=37.1

Q ss_pred             CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 014324            4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPT   43 (426)
Q Consensus         4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~   43 (426)
                      |+.+||+|||||+.||++|+.|+++|++|+|+||+..++.
T Consensus         1 ~~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG   40 (487)
T COG1233           1 MPMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGG   40 (487)
T ss_pred             CCCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCc
Confidence            3568999999999999999999999999999999998875

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.45  E-value=1.9e-06  Score=62.80  Aligned_cols=35  Identities=31%  Similarity=0.557  Sum_probs=32.8

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324            8 KAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP   42 (426)
Q Consensus         8 ~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~   42 (426)
                      +|+|||||+.|+-+|..|++.|.+|+++++.+.+.
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~   35 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL   35 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence            58999999999999999999999999999999853

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=98.45  E-value=3.7e-06  Score=85.19  Aligned_cols=39  Identities=23%  Similarity=0.304  Sum_probs=35.5

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPT   43 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~   43 (426)
                      .++||+|||+|++|+++|+.++++|.+|+|+||....+.
T Consensus        15 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg   53 (578)
T PRK12843         15 AEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGG   53 (578)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Confidence            357999999999999999999999999999999887654

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=98.44  E-value=5.5e-07  Score=95.34  Aligned_cols=36  Identities=28%  Similarity=0.315  Sum_probs=33.9

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP   41 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   41 (426)
                      ..+|+|||||||||++|..|++.|++|+|||+.+.+
T Consensus       306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~  341 (944)
T PRK12779        306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDL  341 (944)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCC
Confidence            579999999999999999999999999999998765

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=98.41  E-value=2.5e-06  Score=84.48  Aligned_cols=33  Identities=21%  Similarity=0.408  Sum_probs=31.5

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEccc
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKA   38 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~   38 (426)
                      +|||+||||||+|+.+|+.+++.|.+|.|+|+.
T Consensus         2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~   34 (484)
T TIGR01438         2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFV   34 (484)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            489999999999999999999999999999985

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=98.41  E-value=3.3e-06  Score=75.35  Aligned_cols=167  Identities=20%  Similarity=0.213  Sum_probs=87.6

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcC------------------C
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNG------------------R   68 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~------------------~   68 (426)
                      ..|+|||+|.|||+++..+-..|-.|+++|+....+..+ ..+.-+|+....+.-+.+.+.                  .
T Consensus        10 spvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNS-iKAsSGINgA~TetQ~~~~i~Dsp~lf~~Dtl~saksk~~   88 (477)
T KOG2404|consen   10 SPVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNS-IKASSGINGAGTETQEKLHIKDSPELFVKDTLSSAKSKGV   88 (477)
T ss_pred             CcEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcc-eecccCcCCCchhhhhhcccccChHHHhhhhhhhcccCCc
Confidence            369999999999999999988876799999999987543 112222332222222222110                  0


Q ss_pred             chhhhccCcceeecccccc-------------cccccccccc-ccCCCcchhccHHHHHHHHHhcC---CCCe-eEeeee
Q 014324           69 PHLLHLATVPLTIDQNQAT-------------DNAKVTRTLA-RDDNFNFRAAHWADLHGLLYNAL---PPEI-FLRGHQ  130 (426)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~-~~~~~~~~~~~r~~l~~~L~~~~---~~~~-i~~~~~  130 (426)
                      ++.+............|..             .|..+.++-. ....+++..|- ..|...|.+..   ++-+ |..+++
T Consensus        89 ~eLm~~La~~S~~AvewL~~ef~lkld~la~lgGHSvpRTHr~s~plppgfei~-~~L~~~l~k~as~~pe~~ki~~nsk  167 (477)
T KOG2404|consen   89 PELMEKLAANSASAVEWLRGEFDLKLDLLAQLGGHSVPRTHRSSGPLPPGFEIV-KALSTRLKKKASENPELVKILLNSK  167 (477)
T ss_pred             HHHHHHHHhcCHHHHHHHhhhcccchHHHHHhcCCCCCcccccCCCCCCchHHH-HHHHHHHHHhhhcChHHHhhhhcce
Confidence            1111111110000000000             0101111100 01112222221 22333343332   2345 889999


Q ss_pred             EEEEEEecCCceEE-EEEEeccCCceEEEeecEEEeccCCchhhhhhhc
Q 014324          131 YLSFCISEVKTTVT-VKAKVLQTDEVIEIKGNLLVAADGCLSSIRQSFL  178 (426)
Q Consensus       131 v~~~~~~~~~~~v~-v~~~~~~~g~~~~~~~d~vI~AdG~~S~vR~~l~  178 (426)
                      |+++..  ++..|. |.+. ..+|+...+.++-||-|+|.++---+.++
T Consensus       168 vv~il~--n~gkVsgVeym-d~sgek~~~~~~~VVlatGGf~ysd~~lL  213 (477)
T KOG2404|consen  168 VVDILR--NNGKVSGVEYM-DASGEKSKIIGDAVVLATGGFGYSDKELL  213 (477)
T ss_pred             eeeeec--CCCeEEEEEEE-cCCCCccceecCceEEecCCcCcChHHHH
Confidence            999994  334444 4444 56788778999999999999986545554

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=98.41  E-value=1.4e-06  Score=83.45  Aligned_cols=35  Identities=29%  Similarity=0.432  Sum_probs=32.8

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP   41 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   41 (426)
                      ++|+|||||++|+.+|+.|+++|++|+|||+++..
T Consensus         1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~   35 (433)
T TIGR00137         1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEK   35 (433)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEeccccc
Confidence            48999999999999999999999999999988764

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.39  E-value=3.6e-07  Score=89.69  Aligned_cols=41  Identities=34%  Similarity=0.541  Sum_probs=37.9

Q ss_pred             CCCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 014324            3 KKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPT   43 (426)
Q Consensus         3 ~~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~   43 (426)
                      ++.+.+|||||||+|||+||..|...|++|+|+|.+..++.
T Consensus        12 ~~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGG   52 (501)
T KOG0029|consen   12 AGKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGG   52 (501)
T ss_pred             ccCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCc
Confidence            34567999999999999999999999999999999999875

>PTZ00052 thioredoxin reductase; Provisional

Probab=98.39  E-value=5.2e-07  Score=89.73  Aligned_cols=33  Identities=21%  Similarity=0.378  Sum_probs=31.4

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEccc
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKA   38 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~   38 (426)
                      .|||+||||||+|+++|..|+++|.+|+|+|+.
T Consensus         5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~   37 (499)
T PTZ00052          5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYV   37 (499)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCeEEEEecc
Confidence            589999999999999999999999999999973

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=98.38  E-value=3.4e-06  Score=81.79  Aligned_cols=38  Identities=24%  Similarity=0.299  Sum_probs=35.0

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP   42 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~   42 (426)
                      ..|||+||||||+|..+|..+++.|.+|.++|+....+
T Consensus         3 ~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lG   40 (454)
T COG1249           3 KEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLG   40 (454)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcC
Confidence            56999999999999999999999999999999997543

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=98.38  E-value=3.7e-06  Score=83.05  Aligned_cols=33  Identities=30%  Similarity=0.459  Sum_probs=31.2

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            8 KAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         8 ~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      +|+||||||+|+++|..|++.|.+|+|+||.+.
T Consensus         2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~~   34 (458)
T PRK06912          2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEADL   34 (458)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEECCcc
Confidence            799999999999999999999999999998753

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=98.35  E-value=1.7e-06  Score=90.74  Aligned_cols=36  Identities=33%  Similarity=0.532  Sum_probs=33.8

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP   41 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   41 (426)
                      ..+|+||||||||+++|..|+++|++|+|||+.+.+
T Consensus       539 gKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~  574 (1019)
T PRK09853        539 RKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENA  574 (1019)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCeEEEEeccccc
Confidence            468999999999999999999999999999998875

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=98.35  E-value=4.9e-06  Score=82.31  Aligned_cols=32  Identities=38%  Similarity=0.614  Sum_probs=30.8

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCcEEEEcccC
Q 014324            8 KAVIVGGSIAGISCAHALLRAGWDVVVLEKAG   39 (426)
Q Consensus         8 ~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~   39 (426)
                      ||+||||||+|+.+|..++++|.+|+|+|+..
T Consensus         3 ~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~   34 (466)
T PRK07845          3 RIVIIGGGPGGYEAALVAAQLGADVTVIERDG   34 (466)
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEEccC
Confidence            79999999999999999999999999999875

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=98.35  E-value=9.3e-06  Score=74.29  Aligned_cols=52  Identities=15%  Similarity=0.127  Sum_probs=44.5

Q ss_pred             CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCchhhh
Q 014324          122 PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSIR  174 (426)
Q Consensus       122 ~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~vR  174 (426)
                      +|+ +..+++|...+.+.++ .|.+++++-+++++++++||.+..|.|.+.-+.
T Consensus       265 QgikF~l~tkv~~a~~~~dg-~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~  317 (506)
T KOG1335|consen  265 QGIKFKLGTKVTSATRNGDG-PVEIEVENAKTGKKETLECDVLLVSIGRRPFTE  317 (506)
T ss_pred             cCceeEeccEEEEeeccCCC-ceEEEEEecCCCceeEEEeeEEEEEccCccccc
Confidence            577 9999999999976665 888888888899999999999999999875443

>PRK07208 hypothetical protein; Provisional

Probab=98.34  E-value=5.6e-07  Score=89.54  Aligned_cols=39  Identities=36%  Similarity=0.488  Sum_probs=36.3

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPT   43 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~   43 (426)
                      +..||+|||||++||++|+.|+++|++|+|+|+++.++.
T Consensus         3 ~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG   41 (479)
T PRK07208          3 NKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGG   41 (479)
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence            457999999999999999999999999999999998765

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=98.31  E-value=5.7e-06  Score=80.14  Aligned_cols=38  Identities=24%  Similarity=0.439  Sum_probs=33.3

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCC--cEEEEcccCCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGW--DVVVLEKAGGPP   42 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~--~v~v~E~~~~~~   42 (426)
                      ...+|+|||||+||+.+|..|+++|.  +|+|+++.+...
T Consensus         2 ~~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~   41 (396)
T PRK09754          2 KEKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLP   41 (396)
T ss_pred             CcCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCC
Confidence            44689999999999999999999986  799999887643

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=98.31  E-value=7.2e-06  Score=81.14  Aligned_cols=34  Identities=15%  Similarity=0.218  Sum_probs=31.8

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHc-CCcEEEEccc
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRA-GWDVVVLEKA   38 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~-G~~v~v~E~~   38 (426)
                      .+|||+||||||+|.++|..+++. |.+|.|+|+.
T Consensus         2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~   36 (486)
T TIGR01423         2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ   36 (486)
T ss_pred             CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence            469999999999999999999996 9999999984

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]

Probab=98.31  E-value=1.4e-06  Score=77.43  Aligned_cols=57  Identities=30%  Similarity=0.367  Sum_probs=44.8

Q ss_pred             CCCccEEEEcCChHHHHHHHHHHHc--CCcEEEEcccCCCCCCC------CCcceeccChhHHHH
Q 014324            4 KEKGKAVIVGGSIAGISCAHALLRA--GWDVVVLEKAGGPPTGS------PTGAGLGLDRPAQRI   60 (426)
Q Consensus         4 ~~~~~V~IvGaG~aGl~~A~~L~~~--G~~v~v~E~~~~~~~~~------~~~~~~~l~~~~~~~   60 (426)
                      ..++|++|||||++|++.|..|.-+  +.+|.|+|+........      ...+|+-..|.++++
T Consensus        46 ~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hqSghNSgViHaGIYY~P~SLKA  110 (453)
T KOG2665|consen   46 KERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQSGHNSGVIHAGIYYKPGSLKA  110 (453)
T ss_pred             cccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhceeecccccceeeeeeeeCCcccch
Confidence            4679999999999999999999877  89999999998875422      123467777766553

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=98.28  E-value=7.1e-06  Score=80.49  Aligned_cols=35  Identities=29%  Similarity=0.555  Sum_probs=31.8

Q ss_pred             cEEEEcCChHHHHHHHHHHHc--CCcEEEEcccCCCC
Q 014324            8 KAVIVGGSIAGISCAHALLRA--GWDVVVLEKAGGPP   42 (426)
Q Consensus         8 ~V~IvGaG~aGl~~A~~L~~~--G~~v~v~E~~~~~~   42 (426)
                      +|+|||||++|+.+|..|++.  +.+|+|+|+.+...
T Consensus         3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~   39 (438)
T PRK13512          3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS   39 (438)
T ss_pred             eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcc
Confidence            799999999999999999887  57999999998754

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=98.25  E-value=4.7e-06  Score=82.12  Aligned_cols=34  Identities=35%  Similarity=0.513  Sum_probs=31.0

Q ss_pred             cEEEEcCChHHHHHHHHHHHcC--CcEEEEcccCCC
Q 014324            8 KAVIVGGSIAGISCAHALLRAG--WDVVVLEKAGGP   41 (426)
Q Consensus         8 ~V~IvGaG~aGl~~A~~L~~~G--~~v~v~E~~~~~   41 (426)
                      +|+|||||++|+++|..|++.+  .+|+|||+.+..
T Consensus         2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~   37 (444)
T PRK09564          2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIV   37 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcc
Confidence            7999999999999999999875  589999998874

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.25  E-value=6.9e-06  Score=78.03  Aligned_cols=155  Identities=15%  Similarity=0.060  Sum_probs=77.8

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcC---CcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcce-eec
Q 014324            7 GKAVIVGGSIAGISCAHALLRAG---WDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPL-TID   82 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G---~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~   82 (426)
                      ++|+|||+|++|+.+|..|.+.-   -.+.|||++...+      +|+..+...-..+  +.+  ...-.....+. .-+
T Consensus         2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G------~GiaYs~~~p~~~--lNv--~a~~mS~~~pD~p~~   71 (474)
T COG4529           2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFG------QGIAYSTEEPEHL--LNV--PAARMSAFAPDIPQD   71 (474)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccC------CCccCCCCCchhh--hcc--ccccccccCCCCchH
Confidence            68999999999999999998761   2399999999864      4444443321111  111  00000000010 000


Q ss_pred             cccccccc--ccc---ccccccCCCcchhccHHHHHHHHH---hcCCCC-eeEeeeeEEEEEEecCCceEEEEEEeccCC
Q 014324           83 QNQATDNA--KVT---RTLARDDNFNFRAAHWADLHGLLY---NALPPE-IFLRGHQYLSFCISEVKTTVTVKAKVLQTD  153 (426)
Q Consensus        83 ~~~~~~~~--~~~---~~~~~~~~~~~~~~~r~~l~~~L~---~~~~~~-~i~~~~~v~~~~~~~~~~~v~v~~~~~~~g  153 (426)
                      +..|..+.  ...   ........++.+.+--..+.+.|.   +..+.. +.....+.+++...++.....++   ..+|
T Consensus        72 F~~WL~~~~~~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~---~~~g  148 (474)
T COG4529          72 FVRWLQKQLQRYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVT---TADG  148 (474)
T ss_pred             HHHHHHhcccccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccCCceEEEe---cCCC
Confidence            11111111  000   000111112222222122222222   222222 45566777777765444455555   6778


Q ss_pred             ceEEEeecEEEeccCCchhhhhh
Q 014324          154 EVIEIKGNLLVAADGCLSSIRQS  176 (426)
Q Consensus       154 ~~~~~~~d~vI~AdG~~S~vR~~  176 (426)
                      +.  ..||.+|.|+|..-+....
T Consensus       149 ~~--~~ad~~Vlatgh~~~~~~~  169 (474)
T COG4529         149 PS--EIADIIVLATGHSAPPADP  169 (474)
T ss_pred             Ce--eeeeEEEEeccCCCCCcch
Confidence            76  6899999999987666555

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.25  E-value=1.1e-06  Score=86.49  Aligned_cols=36  Identities=39%  Similarity=0.609  Sum_probs=33.7

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ++|||+||||||+|+++|+.|+++|++|+|+|+.+.
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~   37 (441)
T PRK08010          2 NKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNA   37 (441)
T ss_pred             CcCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCC
Confidence            569999999999999999999999999999999764

>PLN02546 glutathione reductase

Probab=98.24  E-value=6.8e-06  Score=82.43  Aligned_cols=32  Identities=16%  Similarity=0.154  Sum_probs=30.9

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcc
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEK   37 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~   37 (426)
                      +|||+||||||+|+.+|..++++|.+|.|+|+
T Consensus        79 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~  110 (558)
T PLN02546         79 DFDLFTIGAGSGGVRASRFASNFGASAAVCEL  110 (558)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence            58999999999999999999999999999996

>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=98.20  E-value=4.1e-06  Score=79.85  Aligned_cols=60  Identities=22%  Similarity=0.211  Sum_probs=45.5

Q ss_pred             hcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCchh-hhhhh
Q 014324          118 NALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSS-IRQSF  177 (426)
Q Consensus       118 ~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~-vR~~l  177 (426)
                      .+++.|. +.-..+|.++..++++..+.+++++...|++++|+|+.||-|+|..|- +|+.-
T Consensus       233 TA~r~GA~v~Nh~ev~~Llkd~~~kv~Ga~~rD~iTG~e~~I~Ak~VVNATGpfsDsIr~Md  294 (680)
T KOG0042|consen  233 TAARNGATVLNHVEVVSLLKDKDGKVIGARARDHITGKEYEIRAKVVVNATGPFSDSIRKMD  294 (680)
T ss_pred             HHHhcchhhhhHHHHHHHhhCCCCceeeeEEEEeecCcEEEEEEEEEEeCCCCccHHHHhhc
Confidence            3445566 556667777776666655678888888999999999999999999986 56553

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=98.18  E-value=1e-05  Score=82.42  Aligned_cols=34  Identities=18%  Similarity=0.336  Sum_probs=32.1

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAG   39 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~   39 (426)
                      +|||+||||||+|.++|..+++.|.+|+|+|+..
T Consensus       116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~  149 (659)
T PTZ00153        116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDD  149 (659)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            6899999999999999999999999999999753

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=98.17  E-value=2e-06  Score=85.01  Aligned_cols=60  Identities=27%  Similarity=0.354  Sum_probs=44.8

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcC--CcEEEEcccCCCCCCC----------CCcce--eccChhHHHHHHHHhc
Q 014324            7 GKAVIVGGSIAGISCAHALLRAG--WDVVVLEKAGGPPTGS----------PTGAG--LGLDRPAQRIIQSWLN   66 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G--~~v~v~E~~~~~~~~~----------~~~~~--~~l~~~~~~~l~~~~~   66 (426)
                      .+|+|||||+|||++|+.|+++|  ++|+|+|+++.++...          ..|..  ..-.+...++++++|+
T Consensus         1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl   74 (451)
T PRK11883          1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVRKDGFPIELGPESFLARKPSAPALVKELGL   74 (451)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEeeCCeEEecChHHhcCCcHHHHHHHHHcCC
Confidence            37999999999999999999988  8999999999886421          12211  1123346678888876

>PRK07233 hypothetical protein; Provisional

Probab=98.17  E-value=2e-06  Score=84.50  Aligned_cols=59  Identities=27%  Similarity=0.317  Sum_probs=44.9

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCC---C-cc--------eeccChhHHHHHHHHhc
Q 014324            8 KAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSP---T-GA--------GLGLDRPAQRIIQSWLN   66 (426)
Q Consensus         8 ~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~---~-~~--------~~~l~~~~~~~l~~~~~   66 (426)
                      +|+|||||++||++|+.|+++|++|+|+|+++.++....   . |.        ...-.+...++++++|+
T Consensus         1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~g~~~d~g~~~~~~~~~~~~~l~~~lg~   71 (434)
T PRK07233          1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFEFGGLPIERFYHHIFKSDEALLELLDELGL   71 (434)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccCCcchhhhhhhhccccHHHHHHHHHcCC
Confidence            699999999999999999999999999999998865220   0 11        01123556778888876

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=98.16  E-value=2.1e-06  Score=85.63  Aligned_cols=37  Identities=32%  Similarity=0.609  Sum_probs=35.0

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPT   43 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~   43 (426)
                      .||+|||||++||++|..|+++|++|+|+|++..++.
T Consensus         2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG   38 (492)
T TIGR02733         2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGG   38 (492)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCC
Confidence            5899999999999999999999999999999998864

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=98.16  E-value=2.1e-06  Score=82.29  Aligned_cols=37  Identities=30%  Similarity=0.448  Sum_probs=35.2

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPT   43 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~   43 (426)
                      ++|+|+|||+|||++|..|+.+|++|+|+|+++.++.
T Consensus         1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GG   37 (485)
T COG3349           1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGG   37 (485)
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCc
Confidence            4799999999999999999999999999999999875

>TIGR02730 carot_isom carotene isomerase

Probab=98.15  E-value=2.3e-06  Score=85.30  Aligned_cols=37  Identities=32%  Similarity=0.420  Sum_probs=35.1

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPT   43 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~   43 (426)
                      +||+|||||++||++|..|+++|++|+|+||+..++.
T Consensus         1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG   37 (493)
T TIGR02730         1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGG   37 (493)
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCC
Confidence            5899999999999999999999999999999999864

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]

Probab=98.14  E-value=0.00015  Score=71.13  Aligned_cols=60  Identities=17%  Similarity=0.089  Sum_probs=44.7

Q ss_pred             ccHHHHHHHHHhcCCC-Ce-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCchhh
Q 014324          107 AHWADLHGLLYNALPP-EI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSI  173 (426)
Q Consensus       107 ~~r~~l~~~L~~~~~~-~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~v  173 (426)
                      ++-..+.+.|...++. |+ |..++.|+++....++ .+.|.   +.-|.   |++..+|.|.|.+..-
T Consensus       184 ~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~-~~gVe---T~~G~---iet~~~VNaaGvWAr~  245 (856)
T KOG2844|consen  184 MDPAGLCQALARAASALGALVIENCPVTGLHVETDK-FGGVE---TPHGS---IETECVVNAAGVWARE  245 (856)
T ss_pred             cCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecCC-cccee---ccCcc---eecceEEechhHHHHH
Confidence            4556777778777765 88 9999999999875443 33444   45565   7999999999998643

>TIGR02731 phytoene_desat phytoene desaturase

Probab=98.14  E-value=4.9e-06  Score=82.17  Aligned_cols=60  Identities=27%  Similarity=0.394  Sum_probs=46.9

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCC-----CCc----ce----eccChhHHHHHHHHhcC
Q 014324            8 KAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGS-----PTG----AG----LGLDRPAQRIIQSWLNG   67 (426)
Q Consensus         8 ~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~-----~~~----~~----~~l~~~~~~~l~~~~~~   67 (426)
                      +|+|||||++||++|+.|+++|++|+|+|+++.++...     ..|    .|    ....|+.+++++++|+.
T Consensus         1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~   73 (453)
T TIGR02731         1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNMLQLLKELNIE   73 (453)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECCCCCEEEcCcceeccCCchHHHHHHHcCCc
Confidence            59999999999999999999999999999998765421     011    11    22357889999999873

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>PLN02568 polyamine oxidase

Probab=98.13  E-value=3e-06  Score=84.62  Aligned_cols=42  Identities=26%  Similarity=0.474  Sum_probs=37.3

Q ss_pred             CCCCCCccEEEEcCChHHHHHHHHHHHcC-----CcEEEEcccCCCCC
Q 014324            1 MEKKEKGKAVIVGGSIAGISCAHALLRAG-----WDVVVLEKAGGPPT   43 (426)
Q Consensus         1 m~~~~~~~V~IvGaG~aGl~~A~~L~~~G-----~~v~v~E~~~~~~~   43 (426)
                      ||. +..||+|||||++||++|..|++.|     ++|+|+|++..++.
T Consensus         1 ~~~-~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GG   47 (539)
T PLN02568          1 MVA-KKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGG   47 (539)
T ss_pred             CCC-CCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCC
Confidence            554 4589999999999999999999988     89999999998864

>PLN02576 protoporphyrinogen oxidase

Probab=98.13  E-value=2.8e-06  Score=84.97  Aligned_cols=39  Identities=26%  Similarity=0.383  Sum_probs=36.2

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHc-CCcEEEEcccCCCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRA-GWDVVVLEKAGGPPT   43 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~-G~~v~v~E~~~~~~~   43 (426)
                      .++||+|||||++||++|+.|+++ |++|+|+|+++.++.
T Consensus        11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGG   50 (496)
T PLN02576         11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGG   50 (496)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCC
Confidence            457999999999999999999999 999999999998864

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=98.11  E-value=3.3e-06  Score=80.08  Aligned_cols=37  Identities=30%  Similarity=0.325  Sum_probs=34.1

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPT   43 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~   43 (426)
                      +||+|||||++|+++|..|++.|.+|+|+|++..++.
T Consensus         2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG   38 (377)
T TIGR00031         2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGG   38 (377)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCC
Confidence            6999999999999999999999999999999877653

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>PLN02268 probable polyamine oxidase

Probab=98.11  E-value=3e-06  Score=83.26  Aligned_cols=37  Identities=35%  Similarity=0.544  Sum_probs=34.8

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPT   43 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~   43 (426)
                      .+|+|||||+|||++|+.|.++|++|+|+|+++..+.
T Consensus         1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GG   37 (435)
T PLN02268          1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGG   37 (435)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCc
Confidence            3799999999999999999999999999999998875

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=98.11  E-value=2.9e-06  Score=83.94  Aligned_cols=34  Identities=29%  Similarity=0.433  Sum_probs=32.2

Q ss_pred             CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcc
Q 014324            4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEK   37 (426)
Q Consensus         4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~   37 (426)
                      |..|||+||||||+|+++|..|++.|.+|+|+|+
T Consensus         1 m~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~   34 (460)
T PRK06292          1 MEKYDVIVIGAGPAGYVAARRAAKLGKKVALIEK   34 (460)
T ss_pred             CCcccEEEECCCHHHHHHHHHHHHCCCeEEEEeC
Confidence            3559999999999999999999999999999999

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=98.09  E-value=3.5e-06  Score=83.48  Aligned_cols=61  Identities=20%  Similarity=0.266  Sum_probs=45.6

Q ss_pred             CccEEEEcCChHHHHHHHHHHHc----CCcEEEEcccCCCCCCC----CCccee--------ccChhHHHHHHHHhc
Q 014324            6 KGKAVIVGGSIAGISCAHALLRA----GWDVVVLEKAGGPPTGS----PTGAGL--------GLDRPAQRIIQSWLN   66 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~----G~~v~v~E~~~~~~~~~----~~~~~~--------~l~~~~~~~l~~~~~   66 (426)
                      +.||+|||||+|||++|+.|+++    |++|+|+|+++.++...    ..|..+        .-.+...++++++|+
T Consensus         2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~~~g~~~e~G~~~~~~~~~~~~~l~~~lgl   78 (462)
T TIGR00562         2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKEDGYLIERGPDSFLERKKSAPDLVKDLGL   78 (462)
T ss_pred             CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEeeCCEEEecCccccccCChHHHHHHHHcCC
Confidence            36899999999999999999999    99999999999876421    011111        122447778888876

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=98.09  E-value=2.1e-05  Score=75.63  Aligned_cols=98  Identities=21%  Similarity=0.309  Sum_probs=68.3

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccccc
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQA   86 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   86 (426)
                      .+|+|||||++|+-+|..|++.|.+|+++|+.+.+..     . . +.+.                              
T Consensus       142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~-----~-~-~~~~------------------------------  184 (377)
T PRK04965        142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLA-----S-L-MPPE------------------------------  184 (377)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccc-----h-h-CCHH------------------------------
Confidence            5799999999999999999999999999998775321     0 0 0000                              


Q ss_pred             cccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEe
Q 014324           87 TDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVA  165 (426)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~  165 (426)
                               .            ...+++.|.   +.|+ +++++++.++..+  ...+.++   +.+|++  +.+|+||.
T Consensus       185 ---------~------------~~~l~~~l~---~~gV~i~~~~~v~~i~~~--~~~~~v~---~~~g~~--i~~D~vI~  233 (377)
T PRK04965        185 ---------V------------SSRLQHRLT---EMGVHLLLKSQLQGLEKT--DSGIRAT---LDSGRS--IEVDAVIA  233 (377)
T ss_pred             ---------H------------HHHHHHHHH---hCCCEEEECCeEEEEEcc--CCEEEEE---EcCCcE--EECCEEEE
Confidence                     0            012223332   2377 8889999998743  3345555   567765  89999999


Q ss_pred             ccCCchh
Q 014324          166 ADGCLSS  172 (426)
Q Consensus       166 AdG~~S~  172 (426)
                      |+|..+.
T Consensus       234 a~G~~p~  240 (377)
T PRK04965        234 AAGLRPN  240 (377)
T ss_pred             CcCCCcc
Confidence            9998654

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=98.09  E-value=4.1e-06  Score=88.29  Aligned_cols=37  Identities=38%  Similarity=0.519  Sum_probs=34.4

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP   42 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~   42 (426)
                      .++|+|||||||||++|+.|++.|++|+|||+.+.++
T Consensus       537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lG  573 (1012)
T TIGR03315       537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPG  573 (1012)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccC
Confidence            4799999999999999999999999999999998754

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>TIGR02734 crtI_fam phytoene desaturase

Probab=98.06  E-value=3.5e-06  Score=84.33  Aligned_cols=35  Identities=34%  Similarity=0.527  Sum_probs=33.5

Q ss_pred             EEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 014324            9 AVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPT   43 (426)
Q Consensus         9 V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~   43 (426)
                      |+|||||++||++|..|+++|++|+|+|++..++.
T Consensus         1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG   35 (502)
T TIGR02734         1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGG   35 (502)
T ss_pred             CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcC
Confidence            68999999999999999999999999999999875

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.05  E-value=5.1e-05  Score=75.12  Aligned_cols=105  Identities=16%  Similarity=0.190  Sum_probs=71.1

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ   85 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   85 (426)
                      ..+|+|||||+.|+-+|..|++.|.+|+++|+.+.+..      +  +.+..                            
T Consensus       174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~------~--~d~~~----------------------------  217 (466)
T PRK06115        174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICP------G--TDTET----------------------------  217 (466)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCC------C--CCHHH----------------------------
Confidence            35899999999999999999999999999998765321      0  00000                            


Q ss_pred             ccccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEE
Q 014324           86 ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLV  164 (426)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI  164 (426)
                                             +..+.+.|.   +.|+ ++.++++.+++.++  ..+.+++....+|+..++++|.||
T Consensus       218 -----------------------~~~l~~~l~---~~gV~i~~~~~V~~i~~~~--~~v~v~~~~~~~g~~~~i~~D~vi  269 (466)
T PRK06115        218 -----------------------AKTLQKALT---KQGMKFKLGSKVTGATAGA--DGVSLTLEPAAGGAAETLQADYVL  269 (466)
T ss_pred             -----------------------HHHHHHHHH---hcCCEEEECcEEEEEEEcC--CeEEEEEEEcCCCceeEEEeCEEE
Confidence                                   011222232   2477 99999999997532  345444332234554569999999


Q ss_pred             eccCCchhhh
Q 014324          165 AADGCLSSIR  174 (426)
Q Consensus       165 ~AdG~~S~vR  174 (426)
                      .|.|..+.+.
T Consensus       270 ~a~G~~pn~~  279 (466)
T PRK06115        270 VAIGRRPYTQ  279 (466)
T ss_pred             EccCCccccc
Confidence            9999886654

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=98.05  E-value=4.9e-05  Score=75.41  Aligned_cols=102  Identities=22%  Similarity=0.279  Sum_probs=69.7

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccccc
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQA   86 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   86 (426)
                      .+|+|||||++|+-+|..|++.|.+|+++|+.+.+..     .   ..                                
T Consensus       181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~-----~---~~--------------------------------  220 (472)
T PRK05976        181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILP-----T---ED--------------------------------  220 (472)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCC-----c---CC--------------------------------
Confidence            5899999999999999999999999999998876321     0   00                                


Q ss_pred             cccccccccccccCCCcchhccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEE
Q 014324           87 TDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLV  164 (426)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI  164 (426)
                                             ..+.+.+.+.++ .|+ ++.++++..++...++....+.   ..+|+..++.+|.||
T Consensus       221 -----------------------~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~---~~~g~~~~i~~D~vi  274 (472)
T PRK05976        221 -----------------------AELSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVA---EHNGEEKTLEADKVL  274 (472)
T ss_pred             -----------------------HHHHHHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEE---EeCCceEEEEeCEEE
Confidence                                   011111222222 477 9999999998742122222222   356765569999999


Q ss_pred             eccCCchhhh
Q 014324          165 AADGCLSSIR  174 (426)
Q Consensus       165 ~AdG~~S~vR  174 (426)
                      .|.|....+.
T Consensus       275 ~a~G~~p~~~  284 (472)
T PRK05976        275 VSVGRRPNTE  284 (472)
T ss_pred             EeeCCccCCC
Confidence            9999987654

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=98.04  E-value=5.6e-06  Score=74.24  Aligned_cols=50  Identities=22%  Similarity=0.466  Sum_probs=40.5

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHH
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSW   64 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~   64 (426)
                      ++||+|||||+||++||+.|+++|.+++|+-+....         +..+..++++|.++
T Consensus         2 ~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQsA---------LhfsSGslDlL~~l   51 (421)
T COG3075           2 NFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQSA---------LHFSSGSLDLLGRL   51 (421)
T ss_pred             cccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCChhh---------hhcccccHHHhhcC
Confidence            589999999999999999999999999999887653         33444555566554

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=98.04  E-value=4.1e-05  Score=75.86  Aligned_cols=103  Identities=18%  Similarity=0.199  Sum_probs=71.2

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ   85 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   85 (426)
                      ..+|+|||||++|+.+|..|++.|.+|+++|+.+.+..     .   +.+.               +             
T Consensus       170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~-----~---~~~~---------------~-------------  213 (461)
T TIGR01350       170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILP-----G---EDAE---------------V-------------  213 (461)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCC-----C---CCHH---------------H-------------
Confidence            35899999999999999999999999999998865311     0   0000               0             


Q ss_pred             ccccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEE
Q 014324           86 ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLV  164 (426)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI  164 (426)
                                             ...+.+.|.   +.|+ ++.++++.+++.++  ..+.+.   ..+|+..++.+|.||
T Consensus       214 -----------------------~~~~~~~l~---~~gi~i~~~~~v~~i~~~~--~~v~v~---~~~g~~~~i~~D~vi  262 (461)
T TIGR01350       214 -----------------------SKVVAKALK---KKGVKILTNTKVTAVEKND--DQVVYE---NKGGETETLTGEKVL  262 (461)
T ss_pred             -----------------------HHHHHHHHH---HcCCEEEeCCEEEEEEEeC--CEEEEE---EeCCcEEEEEeCEEE
Confidence                                   011222232   2477 99999999987543  345544   345644458999999


Q ss_pred             eccCCchhhhh
Q 014324          165 AADGCLSSIRQ  175 (426)
Q Consensus       165 ~AdG~~S~vR~  175 (426)
                      .|.|..+.+..
T Consensus       263 ~a~G~~p~~~~  273 (461)
T TIGR01350       263 VAVGRKPNTEG  273 (461)
T ss_pred             EecCCcccCCC
Confidence            99999887653

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=98.00  E-value=7.9e-06  Score=73.15  Aligned_cols=37  Identities=24%  Similarity=0.281  Sum_probs=35.4

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPT   43 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~   43 (426)
                      +|++|||||.+|+.+|..|++.|.+|.|+||++.++.
T Consensus         2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGG   38 (374)
T COG0562           2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGG   38 (374)
T ss_pred             CcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCC
Confidence            7999999999999999999999999999999999875

>PTZ00188 adrenodoxin reductase; Provisional

Probab=98.00  E-value=8.5e-06  Score=78.86  Aligned_cols=39  Identities=23%  Similarity=0.296  Sum_probs=34.2

Q ss_pred             CCccEEEEcCChHHHHHHHHH-HHcCCcEEEEcccCCCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHAL-LRAGWDVVVLEKAGGPPT   43 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L-~~~G~~v~v~E~~~~~~~   43 (426)
                      ...+|+||||||||+.+|..| ++.|++|+||||.+.+..
T Consensus        38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgG   77 (506)
T PTZ00188         38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYG   77 (506)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCcc
Confidence            456899999999999999965 567999999999999864

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=98.00  E-value=6.5e-06  Score=80.00  Aligned_cols=39  Identities=13%  Similarity=0.096  Sum_probs=36.9

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPT   43 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~   43 (426)
                      +.+||+|||+|++|+++|..|++.|.+|+++|++...+.
T Consensus         3 ~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG   41 (443)
T PTZ00363          3 ETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGG   41 (443)
T ss_pred             CcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCc
Confidence            579999999999999999999999999999999998765

>PRK12831 putative oxidoreductase; Provisional

Probab=98.00  E-value=7.7e-06  Score=80.62  Aligned_cols=38  Identities=32%  Similarity=0.644  Sum_probs=34.7

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP   42 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~   42 (426)
                      ...||+|||||||||++|..|++.|++|+|||+.+.++
T Consensus       139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~G  176 (464)
T PRK12831        139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPG  176 (464)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCC
Confidence            45799999999999999999999999999999987653

>PLN02852 ferredoxin-NADP+ reductase

Probab=98.00  E-value=7.4e-06  Score=80.35  Aligned_cols=39  Identities=31%  Similarity=0.388  Sum_probs=34.9

Q ss_pred             CCccEEEEcCChHHHHHHHHHHH--cCCcEEEEcccCCCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLR--AGWDVVVLEKAGGPPT   43 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~--~G~~v~v~E~~~~~~~   43 (426)
                      ...+|+||||||||+.+|..|++  .|++|+|||+.+.+..
T Consensus        25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgG   65 (491)
T PLN02852         25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFG   65 (491)
T ss_pred             CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcc
Confidence            35689999999999999999987  7999999999998753

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=97.99  E-value=8.7e-06  Score=76.74  Aligned_cols=41  Identities=32%  Similarity=0.498  Sum_probs=38.0

Q ss_pred             CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCC
Q 014324            4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTG   44 (426)
Q Consensus         4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~   44 (426)
                      +...||||||||.+||++|..|.+.|++|+|+|.+...+..
T Consensus         5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR   45 (450)
T COG1231           5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGR   45 (450)
T ss_pred             CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCce
Confidence            56789999999999999999999999999999999998753

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=97.98  E-value=5.4e-05  Score=73.32  Aligned_cols=97  Identities=18%  Similarity=0.202  Sum_probs=68.1

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccccc
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQA   86 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   86 (426)
                      .+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+..     ..  ..                                
T Consensus       145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~-----~~--~~--------------------------------  185 (396)
T PRK09754        145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMG-----RN--AP--------------------------------  185 (396)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchh-----hh--cC--------------------------------
Confidence            5799999999999999999999999999998775321     00  00                                


Q ss_pred             cccccccccccccCCCcchhccHHHHHHHHHhcC-CCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEE
Q 014324           87 TDNAKVTRTLARDDNFNFRAAHWADLHGLLYNAL-PPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLV  164 (426)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~-~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI  164 (426)
                                             ..+.+.+.+.+ +.|+ +++++++.+++.   +..+.++   +.+|+.  +.+|+||
T Consensus       186 -----------------------~~~~~~l~~~l~~~GV~i~~~~~V~~i~~---~~~~~v~---l~~g~~--i~aD~Vv  234 (396)
T PRK09754        186 -----------------------PPVQRYLLQRHQQAGVRILLNNAIEHVVD---GEKVELT---LQSGET--LQADVVI  234 (396)
T ss_pred             -----------------------HHHHHHHHHHHHHCCCEEEeCCeeEEEEc---CCEEEEE---ECCCCE--EECCEEE
Confidence                                   01111122222 2477 889999998874   2344454   567765  8999999


Q ss_pred             eccCCchhh
Q 014324          165 AADGCLSSI  173 (426)
Q Consensus       165 ~AdG~~S~v  173 (426)
                      .|.|.....
T Consensus       235 ~a~G~~pn~  243 (396)
T PRK09754        235 YGIGISAND  243 (396)
T ss_pred             ECCCCChhh
Confidence            999987654

>TIGR03452 mycothione_red mycothione reductase

Probab=97.98  E-value=2.8e-05  Score=76.54  Aligned_cols=33  Identities=15%  Similarity=0.129  Sum_probs=28.0

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAG   39 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~   39 (426)
                      ++|||+|||+||+|..+|..  +.|.+|.++|+..
T Consensus         1 ~~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~~~   33 (452)
T TIGR03452         1 RHYDLIIIGTGSGNSIPDPR--FADKRIAIVEKGT   33 (452)
T ss_pred             CCcCEEEECCCHHHHHHHHH--HCCCeEEEEeCCC
Confidence            36999999999999988654  4699999999854

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=97.98  E-value=4.8e-05  Score=74.32  Aligned_cols=38  Identities=18%  Similarity=0.253  Sum_probs=33.5

Q ss_pred             CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324            4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP   41 (426)
Q Consensus         4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   41 (426)
                      +.+.+|+|||||.||+.+|..|.+.+.+|+|||+++..
T Consensus         8 ~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~   45 (424)
T PTZ00318          8 LKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHM   45 (424)
T ss_pred             CCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCc
Confidence            45679999999999999999998778999999988763

>PLN02676 polyamine oxidase

Probab=97.97  E-value=9.2e-06  Score=80.47  Aligned_cols=40  Identities=35%  Similarity=0.532  Sum_probs=36.2

Q ss_pred             CCCccEEEEcCChHHHHHHHHHHHcCC-cEEEEcccCCCCC
Q 014324            4 KEKGKAVIVGGSIAGISCAHALLRAGW-DVVVLEKAGGPPT   43 (426)
Q Consensus         4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~~~~   43 (426)
                      ...+||+|||||++||++|+.|+++|+ +|+|+|++..++.
T Consensus        24 ~~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG   64 (487)
T PLN02676         24 KPSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGG   64 (487)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCC
Confidence            346899999999999999999999998 6999999998764

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=97.97  E-value=6.7e-05  Score=74.13  Aligned_cols=100  Identities=19%  Similarity=0.249  Sum_probs=68.7

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccccc
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQA   86 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   86 (426)
                      .+|+|||||++|+-+|..|++.|.+|+++|+.+.+..      ..  .+.                              
T Consensus       171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~------~~--d~e------------------------------  212 (458)
T PRK06912        171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLP------GE--DED------------------------------  212 (458)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCc------cc--cHH------------------------------
Confidence            5799999999999999999999999999998765311      00  000                              


Q ss_pred             cccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEe
Q 014324           87 TDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVA  165 (426)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~  165 (426)
                               .            +..+.+.|.   +.|+ ++.++++..++.+  +..+.+.    .+|+..++++|+||.
T Consensus       213 ---------~------------~~~l~~~L~---~~GI~i~~~~~V~~i~~~--~~~v~~~----~~g~~~~i~~D~viv  262 (458)
T PRK06912        213 ---------I------------AHILREKLE---NDGVKIFTGAALKGLNSY--KKQALFE----YEGSIQEVNAEFVLV  262 (458)
T ss_pred             ---------H------------HHHHHHHHH---HCCCEEEECCEEEEEEEc--CCEEEEE----ECCceEEEEeCEEEE
Confidence                     0            012222332   2477 9999999998743  2344432    245444689999999


Q ss_pred             ccCCchhhh
Q 014324          166 ADGCLSSIR  174 (426)
Q Consensus       166 AdG~~S~vR  174 (426)
                      |.|..+.+.
T Consensus       263 A~G~~p~~~  271 (458)
T PRK06912        263 SVGRKPRVQ  271 (458)
T ss_pred             ecCCccCCC
Confidence            999887764

>TIGR02053 MerA mercuric reductase

Probab=97.97  E-value=7.4e-06  Score=81.08  Aligned_cols=33  Identities=24%  Similarity=0.306  Sum_probs=31.6

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAG   39 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~   39 (426)
                      |||+||||||+|+++|..|+++|++|+|+||..
T Consensus         1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~   33 (463)
T TIGR02053         1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP   33 (463)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc
Confidence            699999999999999999999999999999875

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=97.96  E-value=8.4e-06  Score=78.37  Aligned_cols=59  Identities=27%  Similarity=0.290  Sum_probs=45.2

Q ss_pred             cEEEEcCChHHHHHHHHHHHcC--CcEEEEcccCCCCCCC----------CCc-ceeccC-hhHHHHHHHHhc
Q 014324            8 KAVIVGGSIAGISCAHALLRAG--WDVVVLEKAGGPPTGS----------PTG-AGLGLD-RPAQRIIQSWLN   66 (426)
Q Consensus         8 ~V~IvGaG~aGl~~A~~L~~~G--~~v~v~E~~~~~~~~~----------~~~-~~~~l~-~~~~~~l~~~~~   66 (426)
                      .|+|||||++||++|+.|++++  ++|+|||+.+..+...          ..| ..+... +..+++++++|+
T Consensus         2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~~G~~~e~G~~~f~~~~~~~l~li~eLGl   74 (444)
T COG1232           2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKIDGFLFERGPHHFLARKEEILDLIKELGL   74 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEeeCCEEEeechhheecchHHHHHHHHHhCc
Confidence            6999999999999999999999  9999999998876411          011 122233 567778888887

>PRK07846 mycothione reductase; Reviewed

Probab=97.95  E-value=5.7e-05  Score=74.36  Aligned_cols=32  Identities=16%  Similarity=0.161  Sum_probs=27.8

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAG   39 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~   39 (426)
                      +|||+||||||+|.++|..  +.|.+|.|+|+..
T Consensus         1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~~~   32 (451)
T PRK07846          1 HYDLIIIGTGSGNSILDER--FADKRIAIVEKGT   32 (451)
T ss_pred             CCCEEEECCCHHHHHHHHH--HCCCeEEEEeCCC
Confidence            4899999999999988865  4699999999854

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.95  E-value=8.9e-05  Score=73.45  Aligned_cols=103  Identities=19%  Similarity=0.206  Sum_probs=70.9

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccccc
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQA   86 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   86 (426)
                      .+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+..     . .  .+..                             
T Consensus       173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~-----~-~--d~~~-----------------------------  215 (466)
T PRK07818        173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALP-----N-E--DAEV-----------------------------  215 (466)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCC-----c-c--CHHH-----------------------------
Confidence            5899999999999999999999999999998765321     0 0  0000                             


Q ss_pred             cccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEe
Q 014324           87 TDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVA  165 (426)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~  165 (426)
                                            +..+.+.|.   +.|+ ++.++++.+++.+  +..+.+++. ..+|+..++++|.||.
T Consensus       216 ----------------------~~~l~~~l~---~~gV~i~~~~~v~~i~~~--~~~~~v~~~-~~~g~~~~i~~D~vi~  267 (466)
T PRK07818        216 ----------------------SKEIAKQYK---KLGVKILTGTKVESIDDN--GSKVTVTVS-KKDGKAQELEADKVLQ  267 (466)
T ss_pred             ----------------------HHHHHHHHH---HCCCEEEECCEEEEEEEe--CCeEEEEEE-ecCCCeEEEEeCEEEE
Confidence                                  011222232   2478 9999999999743  334444432 1466655699999999


Q ss_pred             ccCCchhhh
Q 014324          166 ADGCLSSIR  174 (426)
Q Consensus       166 AdG~~S~vR  174 (426)
                      |.|....+.
T Consensus       268 a~G~~pn~~  276 (466)
T PRK07818        268 AIGFAPRVE  276 (466)
T ss_pred             CcCcccCCC
Confidence            999887664

>PLN02487 zeta-carotene desaturase

Probab=97.94  E-value=1.9e-05  Score=79.19  Aligned_cols=61  Identities=26%  Similarity=0.305  Sum_probs=47.9

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCC-----CCcc----e----eccChhHHHHHHHHhcC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGS-----PTGA----G----LGLDRPAQRIIQSWLNG   67 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~-----~~~~----~----~~l~~~~~~~l~~~~~~   67 (426)
                      ++|+|||||++||++|+.|+++|++|+|+|+.+.++...     ..|.    |    +...++..++++++|+.
T Consensus        76 ~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~~g~~~e~G~h~~~~~~~~~~~ll~~LGl~  149 (569)
T PLN02487         76 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKNGNHIEMGLHVFFGCYNNLFRLMKKVGAD  149 (569)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeecCCcEEecceeEecCCcHHHHHHHHhcCCc
Confidence            599999999999999999999999999999999876311     0111    1    12346788999999883

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=97.94  E-value=1.7e-05  Score=85.01  Aligned_cols=37  Identities=35%  Similarity=0.425  Sum_probs=34.5

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP   42 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~   42 (426)
                      ..+|+|||||||||++|..|+++|++|+|||+.+.++
T Consensus       430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~G  466 (1006)
T PRK12775        430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVG  466 (1006)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCc
Confidence            4699999999999999999999999999999988764

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=97.92  E-value=8.1e-05  Score=73.71  Aligned_cols=101  Identities=18%  Similarity=0.167  Sum_probs=70.9

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ   85 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   85 (426)
                      ..+|+|||||+.|+-+|..|++.|.+|+++|+.+.+..      .  +.+..                            
T Consensus       175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~------~--~d~~~----------------------------  218 (461)
T PRK05249        175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLS------F--LDDEI----------------------------  218 (461)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCC------c--CCHHH----------------------------
Confidence            35899999999999999999999999999998875321      0  00000                            


Q ss_pred             ccccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEE
Q 014324           86 ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLV  164 (426)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI  164 (426)
                                             +..+.+.|.   +.|+ ++.++++++++.+++  .+.++   +.+|++  +++|.||
T Consensus       219 -----------------------~~~l~~~l~---~~gI~v~~~~~v~~i~~~~~--~~~v~---~~~g~~--i~~D~vi  265 (461)
T PRK05249        219 -----------------------SDALSYHLR---DSGVTIRHNEEVEKVEGGDD--GVIVH---LKSGKK--IKADCLL  265 (461)
T ss_pred             -----------------------HHHHHHHHH---HcCCEEEECCEEEEEEEeCC--eEEEE---ECCCCE--EEeCEEE
Confidence                                   011222232   2477 899999999885433  45554   456664  8999999


Q ss_pred             eccCCchhhhh
Q 014324          165 AADGCLSSIRQ  175 (426)
Q Consensus       165 ~AdG~~S~vR~  175 (426)
                      .|.|..+.+..
T Consensus       266 ~a~G~~p~~~~  276 (461)
T PRK05249        266 YANGRTGNTDG  276 (461)
T ss_pred             EeecCCccccC
Confidence            99999877653

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=97.92  E-value=1.2e-05  Score=75.85  Aligned_cols=37  Identities=30%  Similarity=0.523  Sum_probs=35.0

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPT   43 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~   43 (426)
                      .+|+|||||+||+++|+.|++.|++|.++||.+.++.
T Consensus       125 ~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGG  161 (622)
T COG1148         125 KSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGG  161 (622)
T ss_pred             cceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccc
Confidence            5799999999999999999999999999999999864

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=97.92  E-value=1.4e-05  Score=78.57  Aligned_cols=38  Identities=34%  Similarity=0.606  Sum_probs=34.9

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP   42 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~   42 (426)
                      ..++|+||||||+||++|..|++.|++|+|||+.+.++
T Consensus       132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~G  169 (449)
T TIGR01316       132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPG  169 (449)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence            45799999999999999999999999999999987653

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=97.91  E-value=1.1e-05  Score=83.71  Aligned_cols=35  Identities=26%  Similarity=0.348  Sum_probs=32.4

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAG   39 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~   39 (426)
                      ...+|+|||||||||++|+.|++.|++|+|||+.+
T Consensus       382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~  416 (1028)
T PRK06567        382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLK  416 (1028)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccc
Confidence            44699999999999999999999999999999864

>PRK07846 mycothione reductase; Reviewed

Probab=97.90  E-value=0.00011  Score=72.31  Aligned_cols=99  Identities=20%  Similarity=0.293  Sum_probs=68.8

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ   85 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   85 (426)
                      ..+|+|||||+.|+-+|..|++.|.+|+++|+.+.+..      .  +.+.               +             
T Consensus       166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~------~--~d~~---------------~-------------  209 (451)
T PRK07846        166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLR------H--LDDD---------------I-------------  209 (451)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcccc------c--cCHH---------------H-------------
Confidence            35899999999999999999999999999998765310      0  0000               0             


Q ss_pred             ccccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEE
Q 014324           86 ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLV  164 (426)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI  164 (426)
                                             +..+.+    ..+.++ ++.++++.+++.++  ..+.++   +.+|+.  +++|.||
T Consensus       210 -----------------------~~~l~~----l~~~~v~i~~~~~v~~i~~~~--~~v~v~---~~~g~~--i~~D~vl  255 (451)
T PRK07846        210 -----------------------SERFTE----LASKRWDVRLGRNVVGVSQDG--SGVTLR---LDDGST--VEADVLL  255 (451)
T ss_pred             -----------------------HHHHHH----HHhcCeEEEeCCEEEEEEEcC--CEEEEE---ECCCcE--eecCEEE
Confidence                                   011222    223467 88899999987432  345555   456654  8999999


Q ss_pred             eccCCchhhh
Q 014324          165 AADGCLSSIR  174 (426)
Q Consensus       165 ~AdG~~S~vR  174 (426)
                      .|.|....+.
T Consensus       256 ~a~G~~pn~~  265 (451)
T PRK07846        256 VATGRVPNGD  265 (451)
T ss_pred             EEECCccCcc
Confidence            9999887653

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=97.89  E-value=0.00013  Score=70.93  Aligned_cols=103  Identities=22%  Similarity=0.239  Sum_probs=74.9

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ   85 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   85 (426)
                      +..++|||||+.|+-+|..+++.|.+|+|+|+.+.+.+.        ..                               
T Consensus       173 P~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~--------~D-------------------------------  213 (454)
T COG1249         173 PKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPG--------ED-------------------------------  213 (454)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCc--------CC-------------------------------
Confidence            347999999999999999999999999999999986420        00                               


Q ss_pred             ccccccccccccccCCCcchhccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEE
Q 014324           86 ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLL  163 (426)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~v  163 (426)
                                              .++.+.+.+.++ .++ ++.++++..++..+++  +.++   +++|+..++++|.|
T Consensus       214 ------------------------~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~--v~v~---~~~g~~~~~~ad~v  264 (454)
T COG1249         214 ------------------------PEISKELTKQLEKGGVKILLNTKVTAVEKKDDG--VLVT---LEDGEGGTIEADAV  264 (454)
T ss_pred             ------------------------HHHHHHHHHHHHhCCeEEEccceEEEEEecCCe--EEEE---EecCCCCEEEeeEE
Confidence                                    112222333333 366 8899999998854433  6666   45555435899999


Q ss_pred             EeccCCchhhhhh
Q 014324          164 VAADGCLSSIRQS  176 (426)
Q Consensus       164 I~AdG~~S~vR~~  176 (426)
                      +.|.|....+-..
T Consensus       265 LvAiGR~Pn~~~L  277 (454)
T COG1249         265 LVAIGRKPNTDGL  277 (454)
T ss_pred             EEccCCccCCCCC
Confidence            9999998777654

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.89  E-value=3.3e-05  Score=69.83  Aligned_cols=32  Identities=28%  Similarity=0.375  Sum_probs=28.3

Q ss_pred             CCCccEEEEcCChHHHHHHHHHHHcCCcEEEE
Q 014324            4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVL   35 (426)
Q Consensus         4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~   35 (426)
                      ...|||+||||||||.++|++.+|.|++.=|+
T Consensus       209 k~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~  240 (520)
T COG3634         209 KDAYDVLVVGGGPAGAAAAIYAARKGIRTGLV  240 (520)
T ss_pred             cCCceEEEEcCCcchhHHHHHHHhhcchhhhh
Confidence            45799999999999999999999999886444

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.89  E-value=1.4e-05  Score=82.30  Aligned_cols=38  Identities=29%  Similarity=0.505  Sum_probs=34.8

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP   42 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~   42 (426)
                      ...+|+|||||||||++|..|++.|++|+|||+.+.++
T Consensus       326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~G  363 (654)
T PRK12769        326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIG  363 (654)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence            34699999999999999999999999999999988764

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=97.89  E-value=2.1e-05  Score=75.54  Aligned_cols=149  Identities=16%  Similarity=0.158  Sum_probs=77.7

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhH----HHHHHHHhcCCchhhhccCccee
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPA----QRIIQSWLNGRPHLLHLATVPLT   80 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~----~~~l~~~~~~~~~~~~~~~~~~~   80 (426)
                      ..|||||||||-||.-||++.+|.|.++.++=-+.+--.  ..+|.=.+..-+    ++-++.||........+.+..+.
T Consensus         3 ~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig--~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r   80 (621)
T COG0445           3 KEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIG--EMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFR   80 (621)
T ss_pred             CCCceEEECCCccchHHHHhhhccCCeEEEEEcCCCcee--ecccccccCCcccceeEEeehhccchHHHhhhhcCCchh
Confidence            459999999999999999999999999999977665311  111211111111    11122232211111112221111


Q ss_pred             eccccccccccccccccccCCCcchhccHHHHHHHHHhcCC--CCeeEeeeeEEEEEEecCCceEEEEEEeccCCceEEE
Q 014324           81 IDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALP--PEIFLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEI  158 (426)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~--~~~i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~  158 (426)
                        +...+.|.-+....        ..++|....+.+++.++  ++.-.+...|.++..+++...+.|.   +.+|..  +
T Consensus        81 --~LN~sKGPAVra~R--------aQaDk~~Y~~~mk~~le~~~NL~l~q~~v~dli~e~~~~v~GV~---t~~G~~--~  145 (621)
T COG0445          81 --MLNSSKGPAVRAPR--------AQADKWLYRRAMKNELENQPNLHLLQGEVEDLIVEEGQRVVGVV---TADGPE--F  145 (621)
T ss_pred             --hccCCCcchhcchh--------hhhhHHHHHHHHHHHHhcCCCceehHhhhHHHhhcCCCeEEEEE---eCCCCe--e
Confidence              00111111000000        01334444555555554  3444456667777654433233343   678887  8


Q ss_pred             eecEEEeccCCc
Q 014324          159 KGNLLVAADGCL  170 (426)
Q Consensus       159 ~~d~vI~AdG~~  170 (426)
                      .|+.||.++|.+
T Consensus       146 ~a~aVVlTTGTF  157 (621)
T COG0445         146 HAKAVVLTTGTF  157 (621)
T ss_pred             ecCEEEEeeccc
Confidence            999999999976

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=97.88  E-value=1.8e-05  Score=78.41  Aligned_cols=38  Identities=37%  Similarity=0.501  Sum_probs=34.9

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP   42 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~   42 (426)
                      ..++|+||||||+|+++|..|++.|++|+|||+.+.++
T Consensus       142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~G  179 (471)
T PRK12810        142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIG  179 (471)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCC
Confidence            34799999999999999999999999999999998764

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=97.87  E-value=2.4e-05  Score=70.84  Aligned_cols=62  Identities=23%  Similarity=0.310  Sum_probs=47.7

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCC------Cccee-----------ccChhHHHHHHHHhcC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSP------TGAGL-----------GLDRPAQRIIQSWLNG   67 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~------~~~~~-----------~l~~~~~~~l~~~~~~   67 (426)
                      .+.+|+|||+|++||++|+.|+++ .+|++||.....+.+..      .+.|+           .-.|+-.++++.+|+.
T Consensus         7 ~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~Tv~~~~d~~g~~vDtGfiVyn~~tYpnl~~Lf~~iGv~   85 (447)
T COG2907           7 PRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHANTVAGNTDGGGVFVDTGFIVYNERTYPNLTRLFKTIGVD   85 (447)
T ss_pred             CCcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccceeeccccCCceeecceeEEecCCCcchHHHHHHHcCCC
Confidence            457999999999999999999987 79999999998876442      11121           1346777888888874

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=97.86  E-value=5.4e-05  Score=72.52  Aligned_cols=34  Identities=15%  Similarity=0.234  Sum_probs=29.5

Q ss_pred             cEEEEcCChHHHHHHHHHHHc---CCcEEEEcccCCC
Q 014324            8 KAVIVGGSIAGISCAHALLRA---GWDVVVLEKAGGP   41 (426)
Q Consensus         8 ~V~IvGaG~aGl~~A~~L~~~---G~~v~v~E~~~~~   41 (426)
                      +|+|||||+||+.+|..|.++   +.+|+|+|++...
T Consensus         1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~   37 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTT   37 (364)
T ss_pred             CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCC
Confidence            589999999999999999644   6899999988763

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=97.85  E-value=6.2e-05  Score=79.22  Aligned_cols=36  Identities=19%  Similarity=0.334  Sum_probs=31.8

Q ss_pred             ccEEEEcCChHHHHHHHHHHHc----CCcEEEEcccCCCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRA----GWDVVVLEKAGGPP   42 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~----G~~v~v~E~~~~~~   42 (426)
                      .+|+|||+|+||+.+|..|.++    +++|+||++.+.+.
T Consensus         4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~   43 (847)
T PRK14989          4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIA   43 (847)
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCc
Confidence            4899999999999999999764    58999999998864

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.85  E-value=0.00011  Score=72.85  Aligned_cols=102  Identities=18%  Similarity=0.172  Sum_probs=69.8

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccccc
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQA   86 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   86 (426)
                      .+|+|||||++|+-+|..|++.|.+|+++|+.+.+..     .   +.+..                             
T Consensus       173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~-----~---~~~~~-----------------------------  215 (462)
T PRK06416        173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILP-----G---EDKEI-----------------------------  215 (462)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCC-----c---CCHHH-----------------------------
Confidence            5799999999999999999999999999999876321     0   00000                             


Q ss_pred             cccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEe
Q 014324           87 TDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVA  165 (426)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~  165 (426)
                                            ...+++.|.   +.|+ ++.++++.+++.+++  .+.++..  .+|+..++.+|.||.
T Consensus       216 ----------------------~~~l~~~l~---~~gV~i~~~~~V~~i~~~~~--~v~v~~~--~gg~~~~i~~D~vi~  266 (462)
T PRK06416        216 ----------------------SKLAERALK---KRGIKIKTGAKAKKVEQTDD--GVTVTLE--DGGKEETLEADYVLV  266 (462)
T ss_pred             ----------------------HHHHHHHHH---HcCCEEEeCCEEEEEEEeCC--EEEEEEE--eCCeeEEEEeCEEEE
Confidence                                  012222232   2477 999999999985433  4555421  224444689999999


Q ss_pred             ccCCchhhh
Q 014324          166 ADGCLSSIR  174 (426)
Q Consensus       166 AdG~~S~vR  174 (426)
                      |.|....+.
T Consensus       267 a~G~~p~~~  275 (462)
T PRK06416        267 AVGRRPNTE  275 (462)
T ss_pred             eeCCccCCC
Confidence            999886654

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=97.85  E-value=0.00014  Score=72.14  Aligned_cols=103  Identities=16%  Similarity=0.161  Sum_probs=70.5

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccccc
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQA   86 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   86 (426)
                      .+|+|||+|+.|+-+|..|++.|.+|+|+|+.+.+..     .   ..+..                             
T Consensus       184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~-----~---~d~~~-----------------------------  226 (475)
T PRK06327        184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLA-----A---ADEQV-----------------------------  226 (475)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCC-----c---CCHHH-----------------------------
Confidence            5899999999999999999999999999998775321     0   00000                             


Q ss_pred             cccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEe
Q 014324           87 TDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVA  165 (426)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~  165 (426)
                                            +..+.+.|.   ..|+ ++.++++..++.++  ..+.+++. ..+|+..++++|.||.
T Consensus       227 ----------------------~~~~~~~l~---~~gi~i~~~~~v~~i~~~~--~~v~v~~~-~~~g~~~~i~~D~vl~  278 (475)
T PRK06327        227 ----------------------AKEAAKAFT---KQGLDIHLGVKIGEIKTGG--KGVSVAYT-DADGEAQTLEVDKLIV  278 (475)
T ss_pred             ----------------------HHHHHHHHH---HcCcEEEeCcEEEEEEEcC--CEEEEEEE-eCCCceeEEEcCEEEE
Confidence                                  011222232   2477 99999999997533  34555432 2235545699999999


Q ss_pred             ccCCchhhh
Q 014324          166 ADGCLSSIR  174 (426)
Q Consensus       166 AdG~~S~vR  174 (426)
                      |.|..+.+.
T Consensus       279 a~G~~p~~~  287 (475)
T PRK06327        279 SIGRVPNTD  287 (475)
T ss_pred             ccCCccCCC
Confidence            999887654

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=97.85  E-value=1.7e-05  Score=78.40  Aligned_cols=59  Identities=27%  Similarity=0.277  Sum_probs=45.0

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCC-----CCcc--------eeccChhHHHHHHHHhc
Q 014324            8 KAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGS-----PTGA--------GLGLDRPAQRIIQSWLN   66 (426)
Q Consensus         8 ~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~-----~~~~--------~~~l~~~~~~~l~~~~~   66 (426)
                      +|+|||||++||++|+.|+++|++|+|+|+++.++...     ..|.        -....++..++++++|.
T Consensus         1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~~~~~lg~   72 (474)
T TIGR02732         1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDGDGNHIEMGLHVFFGCYANLFRLMKKVGA   72 (474)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeeeecCCCceEeeceEEecCchHHHHHHHHHcCC
Confidence            58999999999999999999999999999999876311     1111        11234567788888876

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>TIGR02053 MerA mercuric reductase

Probab=97.84  E-value=0.00016  Score=71.58  Aligned_cols=102  Identities=17%  Similarity=0.229  Sum_probs=68.4

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccccc
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQA   86 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   86 (426)
                      .+|+|||+|++|+-+|..|++.|.+|+|+|+.+.+..     .   ..+..                             
T Consensus       167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~-----~---~d~~~-----------------------------  209 (463)
T TIGR02053       167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLP-----R---EEPEI-----------------------------  209 (463)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCC-----c---cCHHH-----------------------------
Confidence            5899999999999999999999999999998865321     0   00000                             


Q ss_pred             cccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEe
Q 014324           87 TDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVA  165 (426)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~  165 (426)
                                            +..+++.|.   ..++ ++.++++..++.++  ..+.+++.  .++...++++|.||.
T Consensus       210 ----------------------~~~l~~~l~---~~gV~i~~~~~V~~i~~~~--~~~~v~~~--~~~~~~~i~~D~Vii  260 (463)
T TIGR02053       210 ----------------------SAAVEEALA---EEGIEVVTSAQVKAVSVRG--GGKIITVE--KPGGQGEVEADELLV  260 (463)
T ss_pred             ----------------------HHHHHHHHH---HcCCEEEcCcEEEEEEEcC--CEEEEEEE--eCCCceEEEeCEEEE
Confidence                                  011222232   2477 89999999987532  23444422  122234589999999


Q ss_pred             ccCCchhhh
Q 014324          166 ADGCLSSIR  174 (426)
Q Consensus       166 AdG~~S~vR  174 (426)
                      |.|..+.+.
T Consensus       261 A~G~~p~~~  269 (463)
T TIGR02053       261 ATGRRPNTD  269 (463)
T ss_pred             eECCCcCCC
Confidence            999876654

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PLN02529 lysine-specific histone demethylase 1

Probab=97.83  E-value=2.1e-05  Score=80.71  Aligned_cols=39  Identities=41%  Similarity=0.697  Sum_probs=35.5

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPT   43 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~   43 (426)
                      ...+|+|||||++||++|..|+++|++|+|+|++..++.
T Consensus       159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG  197 (738)
T PLN02529        159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGG  197 (738)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcC
Confidence            457999999999999999999999999999999987653

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=97.83  E-value=1.5e-05  Score=73.97  Aligned_cols=36  Identities=36%  Similarity=0.407  Sum_probs=31.4

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcC-CcEEEEcccCCCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAG-WDVVVLEKAGGPP   42 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G-~~v~v~E~~~~~~   42 (426)
                      |||||||+|++|+++|..|++.| .+|+|+|+.....
T Consensus         1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~   37 (296)
T PF00732_consen    1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYP   37 (296)
T ss_dssp             EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCT
T ss_pred             CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCc
Confidence            79999999999999999999997 7999999998754

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=97.82  E-value=2.7e-05  Score=76.91  Aligned_cols=39  Identities=31%  Similarity=0.520  Sum_probs=35.3

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHc----CCcEEEEcccCCCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRA----GWDVVVLEKAGGPPT   43 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~----G~~v~v~E~~~~~~~   43 (426)
                      ++.+|+|||||+|||++|..|++.    |.+|+|+|+.+.++.
T Consensus        21 ~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG   63 (576)
T PRK13977         21 DNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGG   63 (576)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCC
Confidence            357999999999999999999995    689999999998875

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=97.82  E-value=2.3e-05  Score=82.18  Aligned_cols=38  Identities=32%  Similarity=0.455  Sum_probs=34.5

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP   42 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~   42 (426)
                      ...+|+|||||||||++|..|+++|++|+|||+.+.++
T Consensus       430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~G  467 (752)
T PRK12778        430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIG  467 (752)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence            35699999999999999999999999999999977654

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.81  E-value=0.00022  Score=70.67  Aligned_cols=102  Identities=14%  Similarity=0.145  Sum_probs=68.2

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccccc
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQA   86 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   86 (426)
                      .+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+..      .  +.+...                            
T Consensus       175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~------~--~d~~~~----------------------------  218 (471)
T PRK06467        175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIP------A--ADKDIV----------------------------  218 (471)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCC------c--CCHHHH----------------------------
Confidence            5899999999999999999999999999998876421      0  110000                            


Q ss_pred             cccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEe
Q 014324           87 TDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVA  165 (426)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~  165 (426)
                                             ..+++.|.+   . + ++.++++..++..++  .+.+++. ..+|+..++++|.||.
T Consensus       219 -----------------------~~~~~~l~~---~-v~i~~~~~v~~i~~~~~--~~~v~~~-~~~~~~~~i~~D~vi~  268 (471)
T PRK06467        219 -----------------------KVFTKRIKK---Q-FNIMLETKVTAVEAKED--GIYVTME-GKKAPAEPQRYDAVLV  268 (471)
T ss_pred             -----------------------HHHHHHHhh---c-eEEEcCCEEEEEEEcCC--EEEEEEE-eCCCcceEEEeCEEEE
Confidence                                   112222221   2 5 788889988875433  4554432 1223334589999999


Q ss_pred             ccCCchhhh
Q 014324          166 ADGCLSSIR  174 (426)
Q Consensus       166 AdG~~S~vR  174 (426)
                      |.|....+.
T Consensus       269 a~G~~pn~~  277 (471)
T PRK06467        269 AVGRVPNGK  277 (471)
T ss_pred             eecccccCC
Confidence            999987765

>PRK06370 mercuric reductase; Validated

Probab=97.81  E-value=0.00021  Score=70.71  Aligned_cols=102  Identities=21%  Similarity=0.236  Sum_probs=68.3

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccccc
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQA   86 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   86 (426)
                      .+|+|||||+.|+-+|..|++.|.+|+++|+.+.+..      ..  .+..                             
T Consensus       172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~------~~--~~~~-----------------------------  214 (463)
T PRK06370        172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLP------RE--DEDV-----------------------------  214 (463)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCc------cc--CHHH-----------------------------
Confidence            5899999999999999999999999999998776321      00  0000                             


Q ss_pred             cccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEe
Q 014324           87 TDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVA  165 (426)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~  165 (426)
                                            +..+.+.|.   +.|+ ++.++++.+++..++  .+.+++. ..++ ..++.+|.||.
T Consensus       215 ----------------------~~~l~~~l~---~~GV~i~~~~~V~~i~~~~~--~~~v~~~-~~~~-~~~i~~D~Vi~  265 (463)
T PRK06370        215 ----------------------AAAVREILE---REGIDVRLNAECIRVERDGD--GIAVGLD-CNGG-APEITGSHILV  265 (463)
T ss_pred             ----------------------HHHHHHHHH---hCCCEEEeCCEEEEEEEcCC--EEEEEEE-eCCC-ceEEEeCEEEE
Confidence                                  011222232   2477 999999999985433  3333322 1222 23589999999


Q ss_pred             ccCCchhhh
Q 014324          166 ADGCLSSIR  174 (426)
Q Consensus       166 AdG~~S~vR  174 (426)
                      |.|......
T Consensus       266 A~G~~pn~~  274 (463)
T PRK06370        266 AVGRVPNTD  274 (463)
T ss_pred             CcCCCcCCC
Confidence            999876654

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=97.81  E-value=2.6e-05  Score=80.48  Aligned_cols=39  Identities=41%  Similarity=0.658  Sum_probs=35.9

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPT   43 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~   43 (426)
                      ...+|+|||||++||++|+.|++.|++|+|+|++..++.
T Consensus       237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GG  275 (808)
T PLN02328        237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGG  275 (808)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCC
Confidence            457999999999999999999999999999999988754

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=97.80  E-value=2.3e-05  Score=76.10  Aligned_cols=38  Identities=34%  Similarity=0.489  Sum_probs=35.5

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPT   43 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~   43 (426)
                      ..+|+||||||+||++|..|++.|+.|+|||+.+.++.
T Consensus       123 g~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GG  160 (457)
T COG0493         123 GKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGG  160 (457)
T ss_pred             CCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCce
Confidence            36899999999999999999999999999999999764

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=97.80  E-value=0.00021  Score=67.38  Aligned_cols=141  Identities=15%  Similarity=0.094  Sum_probs=74.7

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCC--cEEEEcccCCCCCCCCCc-ceeccChhHHHHHHHHhcCCchhhhccCcceee
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGW--DVVVLEKAGGPPTGSPTG-AGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTI   81 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~--~v~v~E~~~~~~~~~~~~-~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~   81 (426)
                      ...+|+|||||-++.-.+..|.+++-  +|.++=|+.......... .....+|.-++.+..+..    ..+.....   
T Consensus       189 ~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f~ne~f~P~~v~~f~~l~~----~~R~~~l~---  261 (341)
T PF13434_consen  189 AGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSPFVNEIFSPEYVDYFYSLPD----EERRELLR---  261 (341)
T ss_dssp             --EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----CCHHGGGSHHHHHHHHTS-H----HHHHHHHH---
T ss_pred             CCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccccchhhhcCchhhhhhhcCCH----HHHHHHHH---
Confidence            45789999999999999999999875  799998887654311000 012345544444433221    11000000   


Q ss_pred             ccccccccccccccccccCCCcchhccHHH---HHHHHHh-cC--CCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCc
Q 014324           82 DQNQATDNAKVTRTLARDDNFNFRAAHWAD---LHGLLYN-AL--PPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDE  154 (426)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~---l~~~L~~-~~--~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~  154 (426)
                                      ......+..++...   |.+.|++ .+  +..+ ++.+++|++++..++ ..+.+++++...++
T Consensus       262 ----------------~~~~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~-~~~~l~~~~~~~~~  324 (341)
T PF13434_consen  262 ----------------EQRHTNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGD-GGVRLTLRHRQTGE  324 (341)
T ss_dssp             ----------------HTGGGTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES--SSEEEEEEETTT--
T ss_pred             ----------------HhHhhcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCC-CEEEEEEEECCCCC
Confidence                            00001111222222   2222332 22  2235 889999999998653 37888888778888


Q ss_pred             eEEEeecEEEeccCC
Q 014324          155 VIEIKGNLLVAADGC  169 (426)
Q Consensus       155 ~~~~~~d~vI~AdG~  169 (426)
                      ..++++|+||.|||-
T Consensus       325 ~~~~~~D~VilATGy  339 (341)
T PF13434_consen  325 EETLEVDAVILATGY  339 (341)
T ss_dssp             EEEEEESEEEE---E
T ss_pred             eEEEecCEEEEcCCc
Confidence            888999999999995

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=97.78  E-value=0.00027  Score=70.01  Aligned_cols=102  Identities=19%  Similarity=0.201  Sum_probs=69.4

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ   85 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   85 (426)
                      ..+|+|||||++|+-+|..|++.|.+|+++|+.+.+..      .  +.+.               +             
T Consensus       169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~------~--~d~~---------------~-------------  212 (460)
T PRK06292        169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILP------L--EDPE---------------V-------------  212 (460)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCc------c--hhHH---------------H-------------
Confidence            35899999999999999999999999999998775321      0  0000               0             


Q ss_pred             ccccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEE
Q 014324           86 ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLV  164 (426)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI  164 (426)
                                             +..+++.|.+   . + ++.++++.+++.+++ ..++++   ..+++..++++|.||
T Consensus       213 -----------------------~~~~~~~l~~---~-I~i~~~~~v~~i~~~~~-~~v~~~---~~~~~~~~i~~D~vi  261 (460)
T PRK06292        213 -----------------------SKQAQKILSK---E-FKIKLGAKVTSVEKSGD-EKVEEL---EKGGKTETIEADYVL  261 (460)
T ss_pred             -----------------------HHHHHHHHhh---c-cEEEcCCEEEEEEEcCC-ceEEEE---EcCCceEEEEeCEEE
Confidence                                   0112222321   3 6 888999999875332 345443   345555569999999


Q ss_pred             eccCCchhhh
Q 014324          165 AADGCLSSIR  174 (426)
Q Consensus       165 ~AdG~~S~vR  174 (426)
                      .|.|....+.
T Consensus       262 ~a~G~~p~~~  271 (460)
T PRK06292        262 VATGRRPNTD  271 (460)
T ss_pred             EccCCccCCC
Confidence            9999876655

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=97.78  E-value=0.00017  Score=70.90  Aligned_cols=99  Identities=21%  Similarity=0.171  Sum_probs=67.5

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ   85 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   85 (426)
                      ..+|+|||||++|+.+|..|++.|.+|+|+|+.+.+..     . .  .+.               +             
T Consensus       157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~-----~-~--~~~---------------~-------------  200 (438)
T PRK07251        157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILP-----R-E--EPS---------------V-------------  200 (438)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCC-----C-C--CHH---------------H-------------
Confidence            35799999999999999999999999999999876421     0 0  000               0             


Q ss_pred             ccccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEE
Q 014324           86 ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLV  164 (426)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI  164 (426)
                                             +..+++.|.   +.|+ ++.++++.+++.+  +..+.++    .+|+  ++.+|.||
T Consensus       201 -----------------------~~~~~~~l~---~~GI~i~~~~~V~~i~~~--~~~v~v~----~~g~--~i~~D~vi  246 (438)
T PRK07251        201 -----------------------AALAKQYME---EDGITFLLNAHTTEVKND--GDQVLVV----TEDE--TYRFDALL  246 (438)
T ss_pred             -----------------------HHHHHHHHH---HcCCEEEcCCEEEEEEec--CCEEEEE----ECCe--EEEcCEEE
Confidence                                   011222232   2477 8899999998742  3345443    2444  38999999


Q ss_pred             eccCCchhhh
Q 014324          165 AADGCLSSIR  174 (426)
Q Consensus       165 ~AdG~~S~vR  174 (426)
                      .|.|....+.
T Consensus       247 va~G~~p~~~  256 (438)
T PRK07251        247 YATGRKPNTE  256 (438)
T ss_pred             EeeCCCCCcc
Confidence            9999886643

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=97.78  E-value=2.5e-05  Score=83.95  Aligned_cols=37  Identities=27%  Similarity=0.417  Sum_probs=34.5

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP   42 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~   42 (426)
                      .+||+|||||||||++|+.|++.|++|+|+|+.+.++
T Consensus       163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~G  199 (985)
T TIGR01372       163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAG  199 (985)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCC
Confidence            5799999999999999999999999999999998754

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK02106 choline dehydrogenase; Validated

Probab=97.78  E-value=2.8e-05  Score=78.76  Aligned_cols=39  Identities=28%  Similarity=0.364  Sum_probs=35.1

Q ss_pred             CCCCCCccEEEEcCChHHHHHHHHHHH-cCCcEEEEcccCC
Q 014324            1 MEKKEKGKAVIVGGSIAGISCAHALLR-AGWDVVVLEKAGG   40 (426)
Q Consensus         1 m~~~~~~~V~IvGaG~aGl~~A~~L~~-~G~~v~v~E~~~~   40 (426)
                      ||. ..+||||||||++|+.+|..|++ .|++|+|+|+.+.
T Consensus         1 ~~~-~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~   40 (560)
T PRK02106          1 MTT-MEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGP   40 (560)
T ss_pred             CCC-CcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCc
Confidence            444 56999999999999999999999 7999999999964

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=97.78  E-value=0.00014  Score=70.05  Aligned_cols=35  Identities=14%  Similarity=0.296  Sum_probs=30.8

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcC--CcEEEEcccCCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAG--WDVVVLEKAGGP   41 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G--~~v~v~E~~~~~   41 (426)
                      .+|+|||||+||+.+|..|.+.+  .+|+|+++.+..
T Consensus         3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~   39 (377)
T PRK04965          3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGD   39 (377)
T ss_pred             CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCC
Confidence            48999999999999999998864  689999998864

>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]

Probab=97.77  E-value=6e-05  Score=63.41  Aligned_cols=40  Identities=30%  Similarity=0.513  Sum_probs=34.7

Q ss_pred             CccEEEEcCChHHHHHHHHHHHc--CCcEEEEcccCCCCCCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRA--GWDVVVLEKAGGPPTGS   45 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~--G~~v~v~E~~~~~~~~~   45 (426)
                      ..||+|||||-+||++|+..+++  ..+|.|+|..-.|+.+.
T Consensus        76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGa  117 (328)
T KOG2960|consen   76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGA  117 (328)
T ss_pred             ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCcc
Confidence            35999999999999999999866  57999999999987543

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=97.76  E-value=3.5e-05  Score=76.07  Aligned_cols=38  Identities=32%  Similarity=0.572  Sum_probs=34.7

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP   42 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~   42 (426)
                      ...+|+||||||+|+++|..|++.|++|+|||+.+.++
T Consensus       139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~g  176 (457)
T PRK11749        139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAG  176 (457)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCC
Confidence            34799999999999999999999999999999998753

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=97.76  E-value=3.7e-05  Score=79.08  Aligned_cols=38  Identities=32%  Similarity=0.487  Sum_probs=34.9

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP   42 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~   42 (426)
                      ...+|+||||||+||++|..|++.|++|+|||+.+.++
T Consensus       192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~G  229 (652)
T PRK12814        192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAG  229 (652)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence            34699999999999999999999999999999998764

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=97.76  E-value=3.2e-05  Score=74.65  Aligned_cols=34  Identities=32%  Similarity=0.518  Sum_probs=32.2

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAG   39 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~   39 (426)
                      ++||+|||+|++|+++|+.|+++|.+|+|+|+..
T Consensus         2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~   35 (422)
T PRK05329          2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ   35 (422)
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence            4899999999999999999999999999999875

>TIGR02462 pyranose_ox pyranose oxidase

Probab=97.75  E-value=3.2e-05  Score=76.80  Aligned_cols=56  Identities=18%  Similarity=0.265  Sum_probs=42.3

Q ss_pred             Ce-eEeeeeEEEEEEecCC-ceEE-EEEEeccCCceEEEeecEEEeccCCchhhhhhhc
Q 014324          123 EI-FLRGHQYLSFCISEVK-TTVT-VKAKVLQTDEVIEIKGNLLVAADGCLSSIRQSFL  178 (426)
Q Consensus       123 ~~-i~~~~~v~~~~~~~~~-~~v~-v~~~~~~~g~~~~~~~d~vI~AdG~~S~vR~~l~  178 (426)
                      +. |+.++.|+.+..++++ ..|+ |++.+..+|+..+++|+.||.|.|+--..|-.+.
T Consensus       228 n~~l~~~a~v~~i~~d~~~~~~v~~v~~~d~~~g~~~~v~A~~vVLAagaIetpRLLL~  286 (544)
T TIGR02462       228 RFTLLTNHRCTRLVRNETNESEIEAALVRDLLSGDRFEIKADVYVLACGAVHNPQILVN  286 (544)
T ss_pred             CEEEEcCCEEEEEEeCCCCCceeEEEEEEECCCCcEEEEECCEEEEccCchhhHHHHHh
Confidence            46 9999999999886554 3444 6666665788888999999999997666665554

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>TIGR03452 mycothione_red mycothione reductase

Probab=97.74  E-value=0.00028  Score=69.54  Aligned_cols=97  Identities=19%  Similarity=0.246  Sum_probs=67.1

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccccc
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQA   86 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   86 (426)
                      .+|+|||||+.|+-+|..|++.|.+|+++|+.+.+..      .  +.+.               +              
T Consensus       170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~------~--~d~~---------------~--------------  212 (452)
T TIGR03452       170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLR------H--LDED---------------I--------------  212 (452)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcccc------c--cCHH---------------H--------------
Confidence            5899999999999999999999999999998765310      0  0000               0              


Q ss_pred             cccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEe
Q 014324           87 TDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVA  165 (426)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~  165 (426)
                                            +..+.+.+    ..++ ++.++++.+++.++  ..+.++   +.+|+.  +++|.||.
T Consensus       213 ----------------------~~~l~~~~----~~gI~i~~~~~V~~i~~~~--~~v~v~---~~~g~~--i~~D~vl~  259 (452)
T TIGR03452       213 ----------------------SDRFTEIA----KKKWDIRLGRNVTAVEQDG--DGVTLT---LDDGST--VTADVLLV  259 (452)
T ss_pred             ----------------------HHHHHHHH----hcCCEEEeCCEEEEEEEcC--CeEEEE---EcCCCE--EEcCEEEE
Confidence                                  01122222    2356 88899999987533  345554   455653  89999999


Q ss_pred             ccCCchhh
Q 014324          166 ADGCLSSI  173 (426)
Q Consensus       166 AdG~~S~v  173 (426)
                      |.|.....
T Consensus       260 a~G~~pn~  267 (452)
T TIGR03452       260 ATGRVPNG  267 (452)
T ss_pred             eeccCcCC
Confidence            99987654

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK06116 glutathione reductase; Validated

Probab=97.73  E-value=0.00023  Score=70.23  Aligned_cols=101  Identities=16%  Similarity=0.174  Sum_probs=70.1

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ   85 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   85 (426)
                      ..+|+|||+|++|+-+|..|++.|.+|+++++.+.+..      .  ..+.                             
T Consensus       167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~------~--~~~~-----------------------------  209 (450)
T PRK06116        167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLR------G--FDPD-----------------------------  209 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCcc------c--cCHH-----------------------------
Confidence            35899999999999999999999999999998765310      0  0000                             


Q ss_pred             ccccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEE
Q 014324           86 ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLV  164 (426)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI  164 (426)
                                .            +..+.+.|.   +.|+ ++.++++.+++.+++ ..+.++   +.+|+.  +++|.||
T Consensus       210 ----------~------------~~~l~~~L~---~~GV~i~~~~~V~~i~~~~~-g~~~v~---~~~g~~--i~~D~Vv  258 (450)
T PRK06116        210 ----------I------------RETLVEEME---KKGIRLHTNAVPKAVEKNAD-GSLTLT---LEDGET--LTVDCLI  258 (450)
T ss_pred             ----------H------------HHHHHHHHH---HCCcEEECCCEEEEEEEcCC-ceEEEE---EcCCcE--EEeCEEE
Confidence                      0            012222232   2477 999999999985433 235554   456654  8999999


Q ss_pred             eccCCchhhh
Q 014324          165 AADGCLSSIR  174 (426)
Q Consensus       165 ~AdG~~S~vR  174 (426)
                      .|.|....+.
T Consensus       259 ~a~G~~p~~~  268 (450)
T PRK06116        259 WAIGREPNTD  268 (450)
T ss_pred             EeeCCCcCCC
Confidence            9999876655

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=97.71  E-value=4.7e-05  Score=68.56  Aligned_cols=39  Identities=28%  Similarity=0.505  Sum_probs=35.7

Q ss_pred             CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324            4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP   42 (426)
Q Consensus         4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~   42 (426)
                      +...||||||||.|||.+|..|+.+|.+|+|+|+..+..
T Consensus         3 ~~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqn   41 (552)
T COG3573           3 GLTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQN   41 (552)
T ss_pred             cccccEEEECccHHHHHHHHHHHhcCceEEEEccccccc
Confidence            567899999999999999999999999999999987743

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=97.70  E-value=5.1e-05  Score=74.94  Aligned_cols=38  Identities=32%  Similarity=0.554  Sum_probs=34.8

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP   42 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~   42 (426)
                      ...+|+||||||+|+++|..|++.|++|+|||+.+.++
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~g  177 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIG  177 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCC
Confidence            34689999999999999999999999999999998764

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=97.69  E-value=0.00021  Score=66.41  Aligned_cols=156  Identities=16%  Similarity=0.089  Sum_probs=90.8

Q ss_pred             CCCccEEEEcCChHHHHHHHHHHHcC-CcEEEEcccCCCCCCCCCcceeccChhHHH--HHHHHhcCCchhhhccCccee
Q 014324            4 KEKGKAVIVGGSIAGISCAHALLRAG-WDVVVLEKAGGPPTGSPTGAGLGLDRPAQR--IIQSWLNGRPHLLHLATVPLT   80 (426)
Q Consensus         4 ~~~~~V~IvGaG~aGl~~A~~L~~~G-~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~--~l~~~~~~~~~~~~~~~~~~~   80 (426)
                      +..+|+|.||-||+-|++|++|..++ .+++.+||++.+..+    -|..+...+++  +++.|-     .+.+...+..
T Consensus         3 ~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~WH----pGmllegstlQv~FlkDLV-----Tl~~PTs~yS   73 (436)
T COG3486           3 AEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFSWH----PGMLLEGSTLQVPFLKDLV-----TLVDPTSPYS   73 (436)
T ss_pred             CcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCCcC----CCcccCCccccccchhhhc-----cccCCCCchH
Confidence            47799999999999999999999875 789999999998642    24434433322  122210     0011111111


Q ss_pred             eccccc-cccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEE
Q 014324           81 IDQNQA-TDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEI  158 (426)
Q Consensus        81 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~  158 (426)
                      + .+.. ..++     +..-.......+.|.+..+++.=++..-- ++|+++|++|...+.+..+.... ...+++.  .
T Consensus        74 F-LNYL~~h~R-----Ly~Fl~~e~f~i~R~Ey~dY~~Waa~~l~~~rfg~~V~~i~~~~~d~~~~~~~-~t~~~~~--y  144 (436)
T COG3486          74 F-LNYLHEHGR-----LYEFLNYETFHIPRREYNDYCQWAASQLPSLRFGEEVTDISSLDGDAVVRLFV-VTANGTV--Y  144 (436)
T ss_pred             H-HHHHHHcch-----HhhhhhhhcccccHHHHHHHHHHHHhhCCccccCCeeccccccCCcceeEEEE-EcCCCcE--E
Confidence            1 0000 1111     11112234456778888777754444323 89999999884433333333221 1455554  8


Q ss_pred             eecEEEeccCCchhhhhhh
Q 014324          159 KGNLLVAADGCLSSIRQSF  177 (426)
Q Consensus       159 ~~d~vI~AdG~~S~vR~~l  177 (426)
                      +|+-||...|..-.+-.++
T Consensus       145 ~ar~lVlg~G~~P~IP~~f  163 (436)
T COG3486         145 RARNLVLGVGTQPYIPPCF  163 (436)
T ss_pred             EeeeEEEccCCCcCCChHH
Confidence            9999999999876655443

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=97.69  E-value=0.00047  Score=65.07  Aligned_cols=54  Identities=19%  Similarity=0.134  Sum_probs=38.9

Q ss_pred             HHHHHHhcCCC-Ce-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCch
Q 014324          112 LHGLLYNALPP-EI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLS  171 (426)
Q Consensus       112 l~~~L~~~~~~-~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S  171 (426)
                      +.+-+++.++. |+ ++|+++|.+++..++. ...|.   .++|..  +.+|.||.|-|+.+
T Consensus       175 vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~-~~~v~---~~~g~~--i~~~~vvlA~Grsg  230 (486)
T COG2509         175 VVKNIREYLESLGGEIRFNTEVEDIEIEDNE-VLGVK---LTKGEE--IEADYVVLAPGRSG  230 (486)
T ss_pred             HHHHHHHHHHhcCcEEEeeeEEEEEEecCCc-eEEEE---ccCCcE--EecCEEEEccCcch
Confidence            34445566654 78 9999999999975442 22233   667766  89999999999876

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=97.68  E-value=5.2e-05  Score=72.41  Aligned_cols=50  Identities=24%  Similarity=0.452  Sum_probs=41.0

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHh
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWL   65 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~   65 (426)
                      +||+|||||++|+++|+.|+++|++|+|+|+...         ...++..+.++|..++
T Consensus         1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~~---------~~~~s~gs~d~L~~~~   50 (419)
T TIGR03378         1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQS---------ALHFSSGSLDLLSRLP   50 (419)
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCCc---------hhhhhhHHHhHhhhcC
Confidence            5899999999999999999999999999998653         2446666666666553

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=97.66  E-value=0.00027  Score=74.50  Aligned_cols=101  Identities=19%  Similarity=0.242  Sum_probs=69.1

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccccc
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQA   86 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   86 (426)
                      .+++|||||+.|+-+|..|++.|.+|+|+|+.+.+..     .  .+.+...                            
T Consensus       146 k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~-----~--~ld~~~~----------------------------  190 (847)
T PRK14989        146 KRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMA-----E--QLDQMGG----------------------------  190 (847)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchh-----h--hcCHHHH----------------------------
Confidence            4799999999999999999999999999998765210     0  0110000                            


Q ss_pred             cccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEe
Q 014324           87 TDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVA  165 (426)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~  165 (426)
                                             ..+.+.|.   ..|+ ++.++++.++..+.+.....++   +.+|+.  +.+|+||.
T Consensus       191 -----------------------~~l~~~L~---~~GV~v~~~~~v~~I~~~~~~~~~~v~---~~dG~~--i~~D~Vv~  239 (847)
T PRK14989        191 -----------------------EQLRRKIE---SMGVRVHTSKNTLEIVQEGVEARKTMR---FADGSE--LEVDFIVF  239 (847)
T ss_pred             -----------------------HHHHHHHH---HCCCEEEcCCeEEEEEecCCCceEEEE---ECCCCE--EEcCEEEE
Confidence                                   12222232   2477 9999999998743322333444   567775  89999999


Q ss_pred             ccCCchhh
Q 014324          166 ADGCLSSI  173 (426)
Q Consensus       166 AdG~~S~v  173 (426)
                      |.|.....
T Consensus       240 A~G~rPn~  247 (847)
T PRK14989        240 STGIRPQD  247 (847)
T ss_pred             CCCcccCc
Confidence            99987654

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=97.66  E-value=0.00037  Score=68.99  Aligned_cols=99  Identities=18%  Similarity=0.215  Sum_probs=69.5

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccccc
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQA   86 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   86 (426)
                      .+|+|||+|..|+-+|..|++.|.+|+++++.+.+..     .   ..+..                             
T Consensus       178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~-----~---~d~~~-----------------------------  220 (466)
T PRK07845        178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLP-----G---EDADA-----------------------------  220 (466)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCC-----C---CCHHH-----------------------------
Confidence            4799999999999999999999999999998776421     0   00000                             


Q ss_pred             cccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEe
Q 014324           87 TDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVA  165 (426)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~  165 (426)
                                            +..+++.|.   +.|+ ++.++++.+++.++  ..+.+.   +.+|+.  +++|.||.
T Consensus       221 ----------------------~~~l~~~L~---~~gV~i~~~~~v~~v~~~~--~~~~v~---~~~g~~--l~~D~vl~  268 (466)
T PRK07845        221 ----------------------AEVLEEVFA---RRGMTVLKRSRAESVERTG--DGVVVT---LTDGRT--VEGSHALM  268 (466)
T ss_pred             ----------------------HHHHHHHHH---HCCcEEEcCCEEEEEEEeC--CEEEEE---ECCCcE--EEecEEEE
Confidence                                  012222232   2477 88999999987533  345554   456654  89999999


Q ss_pred             ccCCchhhh
Q 014324          166 ADGCLSSIR  174 (426)
Q Consensus       166 AdG~~S~vR  174 (426)
                      |.|......
T Consensus       269 a~G~~pn~~  277 (466)
T PRK07845        269 AVGSVPNTA  277 (466)
T ss_pred             eecCCcCCC
Confidence            999887654

>PLN02507 glutathione reductase

Probab=97.66  E-value=0.00036  Score=69.58  Aligned_cols=99  Identities=18%  Similarity=0.197  Sum_probs=69.4

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccccc
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQA   86 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   86 (426)
                      .+|+|||||+.|+-+|..|++.|.+|+|+++.+.+..      .  +.+..                             
T Consensus       204 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~------~--~d~~~-----------------------------  246 (499)
T PLN02507        204 KRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLR------G--FDDEM-----------------------------  246 (499)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCc------c--cCHHH-----------------------------
Confidence            5799999999999999999999999999998765311      0  11000                             


Q ss_pred             cccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEe
Q 014324           87 TDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVA  165 (426)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~  165 (426)
                                            +..+++.|.   +.|+ ++.++++.+++..+  ..+.+.   +.+|+.  +++|.||.
T Consensus       247 ----------------------~~~l~~~l~---~~GI~i~~~~~V~~i~~~~--~~~~v~---~~~g~~--i~~D~vl~  294 (499)
T PLN02507        247 ----------------------RAVVARNLE---GRGINLHPRTNLTQLTKTE--GGIKVI---TDHGEE--FVADVVLF  294 (499)
T ss_pred             ----------------------HHHHHHHHH---hCCCEEEeCCEEEEEEEeC--CeEEEE---ECCCcE--EEcCEEEE
Confidence                                  011223332   2477 89999999997533  345554   456654  89999999


Q ss_pred             ccCCchhhh
Q 014324          166 ADGCLSSIR  174 (426)
Q Consensus       166 AdG~~S~vR  174 (426)
                      |.|....+.
T Consensus       295 a~G~~pn~~  303 (499)
T PLN02507        295 ATGRAPNTK  303 (499)
T ss_pred             eecCCCCCC
Confidence            999887654

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.65  E-value=5.7e-05  Score=77.64  Aligned_cols=37  Identities=32%  Similarity=0.525  Sum_probs=34.7

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP   42 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~   42 (426)
                      ..+|+||||||+||++|..|++.|++|+|||+.+.++
T Consensus       310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~G  346 (639)
T PRK12809        310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIG  346 (639)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCC
Confidence            5789999999999999999999999999999998764

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=97.65  E-value=0.00044  Score=68.15  Aligned_cols=101  Identities=12%  Similarity=0.055  Sum_probs=69.8

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccccc
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQA   86 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   86 (426)
                      .+|+|||||..|+-+|..|++.|.+|+++|+.+.+..      .  +.+..                             
T Consensus       167 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~------~--~d~~~-----------------------------  209 (450)
T TIGR01421       167 KRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLR------S--FDSMI-----------------------------  209 (450)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCc------c--cCHHH-----------------------------
Confidence            5899999999999999999999999999998876421      0  11000                             


Q ss_pred             cccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEe
Q 014324           87 TDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVA  165 (426)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~  165 (426)
                                            +..+.+.|.   ..|+ ++.++++..++.+.+ ..+.++   +.+|+ ..+.+|.||.
T Consensus       210 ----------------------~~~~~~~l~---~~gI~i~~~~~v~~i~~~~~-~~~~v~---~~~g~-~~i~~D~vi~  259 (450)
T TIGR01421       210 ----------------------SETITEEYE---KEGINVHKLSKPVKVEKTVE-GKLVIH---FEDGK-SIDDVDELIW  259 (450)
T ss_pred             ----------------------HHHHHHHHH---HcCCEEEcCCEEEEEEEeCC-ceEEEE---ECCCc-EEEEcCEEEE
Confidence                                  011222232   2477 889999999875332 234444   44563 2489999999


Q ss_pred             ccCCchhhh
Q 014324          166 ADGCLSSIR  174 (426)
Q Consensus       166 AdG~~S~vR  174 (426)
                      |.|....+.
T Consensus       260 a~G~~pn~~  268 (450)
T TIGR01421       260 AIGRKPNTK  268 (450)
T ss_pred             eeCCCcCcc
Confidence            999887664

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=97.64  E-value=0.00039  Score=68.46  Aligned_cols=99  Identities=18%  Similarity=0.175  Sum_probs=68.1

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccccc
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQA   86 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   86 (426)
                      .+|+|||+|++|+-+|..|++.|.+|+++|+.+.+..      .  +.+..                             
T Consensus       167 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~------~--~d~~~-----------------------------  209 (446)
T TIGR01424       167 KSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILR------G--FDDDM-----------------------------  209 (446)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCc------c--cCHHH-----------------------------
Confidence            4799999999999999999999999999998665310      0  00000                             


Q ss_pred             cccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEe
Q 014324           87 TDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVA  165 (426)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~  165 (426)
                                            +..+.+.|.   +.|+ ++.++++.+++..++  .+.++   +.+|++  +.+|.||.
T Consensus       210 ----------------------~~~l~~~l~---~~gV~i~~~~~v~~i~~~~~--~~~v~---~~~g~~--i~~D~viv  257 (446)
T TIGR01424       210 ----------------------RALLARNME---GRGIRIHPQTSLTSITKTDD--GLKVT---LSHGEE--IVADVVLF  257 (446)
T ss_pred             ----------------------HHHHHHHHH---HCCCEEEeCCEEEEEEEcCC--eEEEE---EcCCcE--eecCEEEE
Confidence                                  011222232   2477 889999999975333  34444   345654  89999999


Q ss_pred             ccCCchhhh
Q 014324          166 ADGCLSSIR  174 (426)
Q Consensus       166 AdG~~S~vR  174 (426)
                      |.|....+.
T Consensus       258 a~G~~pn~~  266 (446)
T TIGR01424       258 ATGRSPNTK  266 (446)
T ss_pred             eeCCCcCCC
Confidence            999876654

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=97.64  E-value=0.00014  Score=76.35  Aligned_cols=34  Identities=24%  Similarity=0.573  Sum_probs=29.7

Q ss_pred             EEEEcCChHHHHHHHHHHHc---CCcEEEEcccCCCC
Q 014324            9 AVIVGGSIAGISCAHALLRA---GWDVVVLEKAGGPP   42 (426)
Q Consensus         9 V~IvGaG~aGl~~A~~L~~~---G~~v~v~E~~~~~~   42 (426)
                      |+|||||+||+.+|..|.+.   +++|+|||+.+.+.
T Consensus         1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~   37 (785)
T TIGR02374         1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPN   37 (785)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCC
Confidence            68999999999999988775   47999999998753

>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]

Probab=97.62  E-value=7.1e-05  Score=70.81  Aligned_cols=39  Identities=38%  Similarity=0.580  Sum_probs=34.5

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcC-CcEEEEcccCCCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAG-WDVVVLEKAGGPPT   43 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G-~~v~v~E~~~~~~~   43 (426)
                      ...+|+|||||.|||+||..|-++| .+|+|+|...+++.
T Consensus        20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGG   59 (498)
T KOG0685|consen   20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGG   59 (498)
T ss_pred             CCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCc
Confidence            4568999999999999999999776 58999999999875

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=97.61  E-value=0.00038  Score=73.21  Aligned_cols=98  Identities=24%  Similarity=0.354  Sum_probs=66.9

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccccc
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQA   86 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   86 (426)
                      .+|+|||||++|+-+|..|++.|.+|+|+|+.+.+..     .  .+.+..                             
T Consensus       141 k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~-----~--~ld~~~-----------------------------  184 (785)
T TIGR02374       141 KKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMA-----K--QLDQTA-----------------------------  184 (785)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhh-----h--hcCHHH-----------------------------
Confidence            5799999999999999999999999999998664210     0  000000                             


Q ss_pred             cccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEe
Q 014324           87 TDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVA  165 (426)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~  165 (426)
                                            ...+.+.|.   ..|+ ++.+++++++..  ++....++   +.+|+.  +.+|+||.
T Consensus       185 ----------------------~~~l~~~l~---~~GV~v~~~~~v~~i~~--~~~~~~v~---~~dG~~--i~~D~Vi~  232 (785)
T TIGR02374       185 ----------------------GRLLQRELE---QKGLTFLLEKDTVEIVG--ATKADRIR---FKDGSS--LEADLIVM  232 (785)
T ss_pred             ----------------------HHHHHHHHH---HcCCEEEeCCceEEEEc--CCceEEEE---ECCCCE--EEcCEEEE
Confidence                                  012222232   2477 889999888863  33333444   567875  89999999


Q ss_pred             ccCCchh
Q 014324          166 ADGCLSS  172 (426)
Q Consensus       166 AdG~~S~  172 (426)
                      |.|....
T Consensus       233 a~G~~Pn  239 (785)
T TIGR02374       233 AAGIRPN  239 (785)
T ss_pred             CCCCCcC
Confidence            9998644

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=97.56  E-value=9.8e-05  Score=74.91  Aligned_cols=37  Identities=30%  Similarity=0.440  Sum_probs=34.4

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP   42 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~   42 (426)
                      ..+|+||||||+||++|..|++.|++|+|+|+.+.++
T Consensus       137 g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~G  173 (564)
T PRK12771        137 GKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLG  173 (564)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence            4689999999999999999999999999999998864

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=97.55  E-value=0.00012  Score=69.73  Aligned_cols=38  Identities=32%  Similarity=0.450  Sum_probs=34.5

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP   42 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~   42 (426)
                      ...+|+|||||++|+.+|..|++.|++|++||+.+.+.
T Consensus        17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~g   54 (352)
T PRK12770         17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPG   54 (352)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCC
Confidence            34699999999999999999999999999999988753

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=97.55  E-value=0.00072  Score=66.54  Aligned_cols=97  Identities=20%  Similarity=0.235  Sum_probs=67.1

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccccc
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQA   86 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   86 (426)
                      .+|+|||+|+.|+-+|..|++.|.+|+++|+.+.+..     . .  .                                
T Consensus       159 ~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~-----~-~--~--------------------------------  198 (441)
T PRK08010        159 GHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLP-----R-E--D--------------------------------  198 (441)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCC-----C-c--C--------------------------------
Confidence            4899999999999999999999999999998765321     0 0  0                                


Q ss_pred             cccccccccccccCCCcchhccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEE
Q 014324           87 TDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLV  164 (426)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI  164 (426)
                                             ..+.+.+.+.++ .|+ ++.++++.+++.+  +..+.++   .++++   +.+|.||
T Consensus       199 -----------------------~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~--~~~v~v~---~~~g~---i~~D~vl  247 (441)
T PRK08010        199 -----------------------RDIADNIATILRDQGVDIILNAHVERISHH--ENQVQVH---SEHAQ---LAVDALL  247 (441)
T ss_pred             -----------------------HHHHHHHHHHHHhCCCEEEeCCEEEEEEEc--CCEEEEE---EcCCe---EEeCEEE
Confidence                                   001111222222 477 8899999998753  2345544   33443   7899999


Q ss_pred             eccCCchhhh
Q 014324          165 AADGCLSSIR  174 (426)
Q Consensus       165 ~AdG~~S~vR  174 (426)
                      .|.|..+...
T Consensus       248 ~a~G~~pn~~  257 (441)
T PRK08010        248 IASGRQPATA  257 (441)
T ss_pred             EeecCCcCCC
Confidence            9999887653

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=97.54  E-value=0.00065  Score=66.58  Aligned_cols=35  Identities=31%  Similarity=0.509  Sum_probs=32.1

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ..+|+|||||++|+-+|..|++.|.+|+++++.+.
T Consensus       137 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~  171 (427)
T TIGR03385       137 VENVVIIGGGYIGIEMAEALRERGKNVTLIHRSER  171 (427)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcc
Confidence            35899999999999999999999999999998765

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=97.52  E-value=0.0012  Score=67.48  Aligned_cols=35  Identities=26%  Similarity=0.235  Sum_probs=32.4

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP   41 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   41 (426)
                      .+|+|||||+.|+-+|..|++.|.+|+++|+.+.+
T Consensus       313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~l  347 (659)
T PTZ00153        313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQL  347 (659)
T ss_pred             CceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcc
Confidence            47999999999999999999999999999998764

>PRK14694 putative mercuric reductase; Provisional

Probab=97.52  E-value=0.00079  Score=66.78  Aligned_cols=32  Identities=28%  Similarity=0.533  Sum_probs=29.8

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEccc
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKA   38 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~   38 (426)
                      .+|+|||+|+.|+-+|..|++.|.+|+++++.
T Consensus       179 ~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~  210 (468)
T PRK14694        179 ERLLVIGASVVALELAQAFARLGSRVTVLARS  210 (468)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEECC
Confidence            58999999999999999999999999999863

>KOG2852 consensus Possible oxidoreductase [General function prediction only]

Probab=97.51  E-value=0.0088  Score=53.25  Aligned_cols=39  Identities=31%  Similarity=0.392  Sum_probs=34.9

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcC------CcEEEEcccCCCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAG------WDVVVLEKAGGPPT   43 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G------~~v~v~E~~~~~~~   43 (426)
                      +..+|+|||||+.|..+|+.|++++      +.|++||++.-.+.
T Consensus         9 nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~g   53 (380)
T KOG2852|consen    9 NSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGG   53 (380)
T ss_pred             CceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccc
Confidence            3478999999999999999999997      89999999987654

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=97.51  E-value=0.00013  Score=72.42  Aligned_cols=37  Identities=35%  Similarity=0.469  Sum_probs=34.2

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP   42 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~   42 (426)
                      ..+|+||||||+|+++|..|+++|++|+|||+.+.++
T Consensus       143 ~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~g  179 (485)
T TIGR01317       143 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCG  179 (485)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCC
Confidence            3699999999999999999999999999999998754

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=97.50  E-value=0.0028  Score=57.53  Aligned_cols=38  Identities=24%  Similarity=0.451  Sum_probs=34.0

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP   42 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~   42 (426)
                      -+||.||||||-+||++|...+..|.+|.++|--..-+
T Consensus        18 ydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP   55 (503)
T KOG4716|consen   18 YDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTP   55 (503)
T ss_pred             CCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCC
Confidence            36899999999999999999999999999999776543

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=97.48  E-value=0.0018  Score=59.97  Aligned_cols=99  Identities=23%  Similarity=0.178  Sum_probs=67.1

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ   85 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   85 (426)
                      ..+|+|||+|++|+-+|..|++.+.+|+++++.+...          ..                               
T Consensus       141 ~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~----------~~-------------------------------  179 (300)
T TIGR01292       141 NKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFR----------AE-------------------------------  179 (300)
T ss_pred             CCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccC----------cC-------------------------------
Confidence            3589999999999999999999999999998864310          00                               


Q ss_pred             ccccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEE
Q 014324           86 ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLV  164 (426)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI  164 (426)
                                              ..+.+.|.+  ..++ +++++++.+++.+  .....+++.+..+|+..++.+|.||
T Consensus       180 ------------------------~~~~~~l~~--~~gv~~~~~~~v~~i~~~--~~~~~v~~~~~~~g~~~~i~~D~vi  231 (300)
T TIGR01292       180 ------------------------KILLDRLRK--NPNIEFLWNSTVKEIVGD--NKVEGVKIKNTVTGEEEELKVDGVF  231 (300)
T ss_pred             ------------------------HHHHHHHHh--CCCeEEEeccEEEEEEcc--CcEEEEEEEecCCCceEEEEccEEE
Confidence                                    011122221  1367 8889999988742  2223344333345666679999999


Q ss_pred             eccCCchhh
Q 014324          165 AADGCLSSI  173 (426)
Q Consensus       165 ~AdG~~S~v  173 (426)
                      .|.|.....
T Consensus       232 ~a~G~~~~~  240 (300)
T TIGR01292       232 IAIGHEPNT  240 (300)
T ss_pred             EeeCCCCCh
Confidence            999966443

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PLN03000 amine oxidase

Probab=97.48  E-value=0.00014  Score=75.40  Aligned_cols=39  Identities=38%  Similarity=0.645  Sum_probs=36.1

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPT   43 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~   43 (426)
                      ...+|+|||||++||++|..|++.|++|+|+|++..++.
T Consensus       183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGG  221 (881)
T PLN03000        183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGG  221 (881)
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCC
Confidence            357999999999999999999999999999999998765

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=97.47  E-value=0.00088  Score=65.82  Aligned_cols=35  Identities=17%  Similarity=0.342  Sum_probs=32.3

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP   41 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   41 (426)
                      .+|+|||||+.|+-+|..|++.|.+|+++++.+.+
T Consensus       149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l  183 (438)
T PRK13512        149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDKI  183 (438)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEeccccc
Confidence            58999999999999999999999999999987753

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=97.47  E-value=0.0014  Score=65.70  Aligned_cols=97  Identities=21%  Similarity=0.195  Sum_probs=66.7

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccccc
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQA   86 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   86 (426)
                      .+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+.      .            .                        
T Consensus       353 k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~------~------------~------------------------  390 (515)
T TIGR03140       353 KDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELK------A------------D------------------------  390 (515)
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCC------h------------h------------------------
Confidence            589999999999999999999999999998654320      0            0                        


Q ss_pred             cccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceE-EEEEEeccCCceEEEeecEEE
Q 014324           87 TDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTV-TVKAKVLQTDEVIEIKGNLLV  164 (426)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v-~v~~~~~~~g~~~~~~~d~vI  164 (426)
                                             ..+.+.|.+  ..|+ +++++.+.+++.  ++..+ .+++.+..+|+..++.+|.||
T Consensus       391 -----------------------~~l~~~l~~--~~gV~i~~~~~v~~i~~--~~~~v~~v~~~~~~~~~~~~i~~D~vi  443 (515)
T TIGR03140       391 -----------------------KVLQDKLKS--LPNVDILTSAQTTEIVG--DGDKVTGIRYQDRNSGEEKQLDLDGVF  443 (515)
T ss_pred             -----------------------HHHHHHHhc--CCCCEEEECCeeEEEEc--CCCEEEEEEEEECCCCcEEEEEcCEEE
Confidence                                   001112221  1477 889999998873  32233 255444445655679999999


Q ss_pred             eccCCchh
Q 014324          165 AADGCLSS  172 (426)
Q Consensus       165 ~AdG~~S~  172 (426)
                      .|.|....
T Consensus       444 ~a~G~~Pn  451 (515)
T TIGR03140       444 VQIGLVPN  451 (515)
T ss_pred             EEeCCcCC
Confidence            99997653

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]

Probab=97.45  E-value=0.00015  Score=67.69  Aligned_cols=39  Identities=31%  Similarity=0.395  Sum_probs=33.7

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcE--EEEcccCCCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDV--VVLEKAGGPPT   43 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v--~v~E~~~~~~~   43 (426)
                      ..++|+|||||++||++|+.|++++.+|  +|||+.++.+.
T Consensus        10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGG   50 (491)
T KOG1276|consen   10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGG   50 (491)
T ss_pred             ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccc
Confidence            4579999999999999999999998765  55999998764

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=97.44  E-value=0.00097  Score=65.72  Aligned_cols=35  Identities=20%  Similarity=0.339  Sum_probs=31.6

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ..+|+|||||++|+-+|..|.+.|.+|+++++.+.
T Consensus       149 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~  183 (444)
T PRK09564        149 IKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDR  183 (444)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcc
Confidence            35899999999999999999999999999987664

>PTZ00052 thioredoxin reductase; Provisional

Probab=97.44  E-value=0.0011  Score=66.30  Aligned_cols=98  Identities=24%  Similarity=0.324  Sum_probs=66.4

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccccc
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQA   86 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   86 (426)
                      .+|+|||||+.|+-+|..|++.|.+|+|+++. .+.      ..  +.+..                             
T Consensus       183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l------~~--~d~~~-----------------------------  224 (499)
T PTZ00052        183 GKTLIVGASYIGLETAGFLNELGFDVTVAVRS-IPL------RG--FDRQC-----------------------------  224 (499)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC-ccc------cc--CCHHH-----------------------------
Confidence            47999999999999999999999999999863 211      00  11000                             


Q ss_pred             cccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEe
Q 014324           87 TDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVA  165 (426)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~  165 (426)
                                            +..+.+.|.   ..|+ ++.++++..++..+  ..+.+.   +.+|+.  +.+|.||.
T Consensus       225 ----------------------~~~l~~~l~---~~GV~i~~~~~v~~v~~~~--~~~~v~---~~~g~~--i~~D~vl~  272 (499)
T PTZ00052        225 ----------------------SEKVVEYMK---EQGTLFLEGVVPINIEKMD--DKIKVL---FSDGTT--ELFDTVLY  272 (499)
T ss_pred             ----------------------HHHHHHHHH---HcCCEEEcCCeEEEEEEcC--CeEEEE---ECCCCE--EEcCEEEE
Confidence                                  011222232   2467 88898888887533  234444   456764  78999999


Q ss_pred             ccCCchhhh
Q 014324          166 ADGCLSSIR  174 (426)
Q Consensus       166 AdG~~S~vR  174 (426)
                      |.|..+.+.
T Consensus       273 a~G~~pn~~  281 (499)
T PTZ00052        273 ATGRKPDIK  281 (499)
T ss_pred             eeCCCCCcc
Confidence            999987654

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=97.43  E-value=0.0012  Score=65.71  Aligned_cols=32  Identities=38%  Similarity=0.669  Sum_probs=29.7

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEccc
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKA   38 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~   38 (426)
                      .+|+|||||+.|+-+|..|++.|.+|+|+++.
T Consensus       181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~  212 (484)
T TIGR01438       181 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS  212 (484)
T ss_pred             CCEEEECCCHHHHHHHHHHHHhCCcEEEEEec
Confidence            47999999999999999999999999999863

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK14727 putative mercuric reductase; Provisional

Probab=97.40  E-value=0.0012  Score=65.54  Aligned_cols=97  Identities=16%  Similarity=0.155  Sum_probs=65.5

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccccc
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQA   86 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   86 (426)
                      .+|+|||||+.|+-+|..|++.|.+|+++++.....      .   ..+..                             
T Consensus       189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~l~------~---~d~~~-----------------------------  230 (479)
T PRK14727        189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARSTLLF------R---EDPLL-----------------------------  230 (479)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCCC------c---chHHH-----------------------------
Confidence            579999999999999999999999999998642110      0   00000                             


Q ss_pred             cccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEe
Q 014324           87 TDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVA  165 (426)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~  165 (426)
                                            ...+++.|.   +.|+ ++.++++..++.++  ..+.+.   ..++   ++.+|.||.
T Consensus       231 ----------------------~~~l~~~L~---~~GV~i~~~~~V~~i~~~~--~~~~v~---~~~g---~i~aD~Vlv  277 (479)
T PRK14727        231 ----------------------GETLTACFE---KEGIEVLNNTQASLVEHDD--NGFVLT---TGHG---ELRAEKLLI  277 (479)
T ss_pred             ----------------------HHHHHHHHH---hCCCEEEcCcEEEEEEEeC--CEEEEE---EcCC---eEEeCEEEE
Confidence                                  011222232   2477 88999999987533  245444   3344   278999999


Q ss_pred             ccCCchhhh
Q 014324          166 ADGCLSSIR  174 (426)
Q Consensus       166 AdG~~S~vR  174 (426)
                      |.|..+.+.
T Consensus       278 A~G~~pn~~  286 (479)
T PRK14727        278 STGRHANTH  286 (479)
T ss_pred             ccCCCCCcc
Confidence            999987664

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=97.39  E-value=0.0014  Score=65.13  Aligned_cols=101  Identities=14%  Similarity=0.199  Sum_probs=67.2

Q ss_pred             CccEEEEcCChHHHHHHHHHHH---cCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeec
Q 014324            6 KGKAVIVGGSIAGISCAHALLR---AGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTID   82 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~---~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~   82 (426)
                      ..+|+|||||+.|+-+|..++.   .|.+|+|+|+.+.+..      .  +.+..                         
T Consensus       187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~------~--~d~~~-------------------------  233 (486)
T TIGR01423       187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILR------G--FDSTL-------------------------  233 (486)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcccc------c--cCHHH-------------------------
Confidence            3579999999999999976654   4999999998876421      0  11000                         


Q ss_pred             cccccccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeec
Q 014324           83 QNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGN  161 (426)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d  161 (426)
                                                +..+.+.|.   +.|+ ++.++++.+++..++ ..+.++   +.+|+.  +++|
T Consensus       234 --------------------------~~~l~~~L~---~~GI~i~~~~~v~~i~~~~~-~~~~v~---~~~g~~--i~~D  278 (486)
T TIGR01423       234 --------------------------RKELTKQLR---ANGINIMTNENPAKVTLNAD-GSKHVT---FESGKT--LDVD  278 (486)
T ss_pred             --------------------------HHHHHHHHH---HcCCEEEcCCEEEEEEEcCC-ceEEEE---EcCCCE--EEcC
Confidence                                      012222232   2477 899999999875433 224444   345654  8999


Q ss_pred             EEEeccCCchhhh
Q 014324          162 LLVAADGCLSSIR  174 (426)
Q Consensus       162 ~vI~AdG~~S~vR  174 (426)
                      .||.|.|....+.
T Consensus       279 ~vl~a~G~~Pn~~  291 (486)
T TIGR01423       279 VVMMAIGRVPRTQ  291 (486)
T ss_pred             EEEEeeCCCcCcc
Confidence            9999999887664

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=97.38  E-value=0.0015  Score=62.21  Aligned_cols=37  Identities=27%  Similarity=0.452  Sum_probs=33.2

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcC--CcEEEEcccCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAG--WDVVVLEKAGGP   41 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G--~~v~v~E~~~~~   41 (426)
                      .+.+|+|||||-+|+.+|..|.++-  .+|+++|++...
T Consensus         2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~h   40 (405)
T COG1252           2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYH   40 (405)
T ss_pred             CCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCcc
Confidence            3468999999999999999999975  899999999874

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=97.37  E-value=0.00016  Score=74.57  Aligned_cols=38  Identities=29%  Similarity=0.434  Sum_probs=35.4

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPT   43 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~   43 (426)
                      ..+|+|||.|||||++|-+|-+.|+.|+||||...++.
T Consensus      1785 g~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~gg 1822 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGG 1822 (2142)
T ss_pred             CcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCc
Confidence            36899999999999999999999999999999999764

>PLN02976 amine oxidase

Probab=97.36  E-value=0.00022  Score=76.73  Aligned_cols=39  Identities=33%  Similarity=0.533  Sum_probs=35.5

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPT   43 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~   43 (426)
                      ..++|+|||||++|+++|+.|++.|++|+|||++..++.
T Consensus       692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGG  730 (1713)
T PLN02976        692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGG  730 (1713)
T ss_pred             CCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCC
Confidence            347999999999999999999999999999999887754

>PTZ00058 glutathione reductase; Provisional

Probab=97.36  E-value=0.0017  Score=65.36  Aligned_cols=102  Identities=10%  Similarity=0.089  Sum_probs=68.0

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ   85 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   85 (426)
                      ..+|+|||||..|+-+|..|++.|.+|+|+|+.+.+..      .  +.+...                           
T Consensus       237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~------~--~d~~i~---------------------------  281 (561)
T PTZ00058        237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLR------K--FDETII---------------------------  281 (561)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEecccccc------c--CCHHHH---------------------------
Confidence            45899999999999999999999999999998765321      0  000000                           


Q ss_pred             ccccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEE
Q 014324           86 ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLV  164 (426)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI  164 (426)
                                              ..+.+.|.   +.|+ ++.++++.+++.+++ ..+.+.   ..++. .++++|.|+
T Consensus       282 ------------------------~~l~~~L~---~~GV~i~~~~~V~~I~~~~~-~~v~v~---~~~~~-~~i~aD~Vl  329 (561)
T PTZ00058        282 ------------------------NELENDMK---KNNINIITHANVEEIEKVKE-KNLTIY---LSDGR-KYEHFDYVI  329 (561)
T ss_pred             ------------------------HHHHHHHH---HCCCEEEeCCEEEEEEecCC-CcEEEE---ECCCC-EEEECCEEE
Confidence                                    11222232   2477 889999998875322 234443   22333 248999999


Q ss_pred             eccCCchhhh
Q 014324          165 AADGCLSSIR  174 (426)
Q Consensus       165 ~AdG~~S~vR  174 (426)
                      .|.|....+.
T Consensus       330 vA~Gr~Pn~~  339 (561)
T PTZ00058        330 YCVGRSPNTE  339 (561)
T ss_pred             ECcCCCCCcc
Confidence            9999876544

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=97.35  E-value=0.0028  Score=63.66  Aligned_cols=98  Identities=20%  Similarity=0.163  Sum_probs=69.0

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccccc
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQA   86 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   86 (426)
                      .+|+|||||.+|+-+|..|+..|.+|+|+++.+.+..                         .                 
T Consensus       352 k~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~-------------------------~-----------------  389 (517)
T PRK15317        352 KRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELKA-------------------------D-----------------  389 (517)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccccc-------------------------c-----------------
Confidence            5899999999999999999999999999987764210                         0                 


Q ss_pred             cccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEE-EEEEeccCCceEEEeecEEE
Q 014324           87 TDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVT-VKAKVLQTDEVIEIKGNLLV  164 (426)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~-v~~~~~~~g~~~~~~~d~vI  164 (426)
                                             ..+.+.|.+  ..++ +++++.+++++.  ++..++ +++.+..+|+..++.+|.|+
T Consensus       390 -----------------------~~l~~~l~~--~~gI~i~~~~~v~~i~~--~~g~v~~v~~~~~~~g~~~~i~~D~v~  442 (517)
T PRK15317        390 -----------------------QVLQDKLRS--LPNVTIITNAQTTEVTG--DGDKVTGLTYKDRTTGEEHHLELEGVF  442 (517)
T ss_pred             -----------------------HHHHHHHhc--CCCcEEEECcEEEEEEc--CCCcEEEEEEEECCCCcEEEEEcCEEE
Confidence                                   001111211  1477 899999999874  323332 55544556776679999999


Q ss_pred             eccCCchhh
Q 014324          165 AADGCLSSI  173 (426)
Q Consensus       165 ~AdG~~S~v  173 (426)
                      .|.|....+
T Consensus       443 ~~~G~~p~~  451 (517)
T PRK15317        443 VQIGLVPNT  451 (517)
T ss_pred             EeECCccCc
Confidence            999987543

>PRK13984 putative oxidoreductase; Provisional

Probab=97.34  E-value=0.00026  Score=72.52  Aligned_cols=38  Identities=37%  Similarity=0.517  Sum_probs=34.9

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP   42 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~   42 (426)
                      ...+|+|||+||+|+++|..|+++|++|+|||+.+.++
T Consensus       282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~g  319 (604)
T PRK13984        282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPG  319 (604)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence            35689999999999999999999999999999998764

>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]

Probab=97.33  E-value=0.00025  Score=63.64  Aligned_cols=37  Identities=32%  Similarity=0.456  Sum_probs=31.4

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHc-CC-cEEEEcccCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRA-GW-DVVVLEKAGGP   41 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~-G~-~v~v~E~~~~~   41 (426)
                      .+++|+|||||-+|+++|..+.++ |- +|.|+|....-
T Consensus        38 ~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~H   76 (446)
T KOG3851|consen   38 KHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDH   76 (446)
T ss_pred             cceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhc
Confidence            568999999999999999999876 43 78899987763

>PRK13748 putative mercuric reductase; Provisional

Probab=97.30  E-value=0.0016  Score=66.21  Aligned_cols=32  Identities=25%  Similarity=0.519  Sum_probs=30.1

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEccc
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKA   38 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~   38 (426)
                      .+|+|||||+.|+-+|..|++.|.+|+|+++.
T Consensus       271 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~  302 (561)
T PRK13748        271 ERLAVIGSSVVALELAQAFARLGSKVTILARS  302 (561)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEecC
Confidence            57999999999999999999999999999874

>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]

Probab=97.30  E-value=0.00066  Score=60.43  Aligned_cols=39  Identities=21%  Similarity=0.287  Sum_probs=31.5

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcC-------CcEEEEcccCCCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAG-------WDVVVLEKAGGPPT   43 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G-------~~v~v~E~~~~~~~   43 (426)
                      ..++|+|||+|..||+.|+.+.+.+       .+|+|++-+..+..
T Consensus         2 ~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~e~T   47 (342)
T KOG3923|consen    2 KTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFTEDT   47 (342)
T ss_pred             CCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCcccc
Confidence            3469999999999999998887743       68999977776543

>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]

Probab=97.30  E-value=0.00031  Score=64.56  Aligned_cols=39  Identities=31%  Similarity=0.347  Sum_probs=33.8

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHc--CCcEEEEcccCCCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRA--GWDVVVLEKAGGPPT   43 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~--G~~v~v~E~~~~~~~   43 (426)
                      .+..|+|||+||||+.+|..|-++  +++|.|+|+.+.|..
T Consensus        19 ~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFG   59 (468)
T KOG1800|consen   19 STPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFG   59 (468)
T ss_pred             CCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccc
Confidence            456999999999999999888774  689999999999754

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=97.26  E-value=0.0019  Score=62.87  Aligned_cols=36  Identities=28%  Similarity=0.380  Sum_probs=34.1

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP   42 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~   42 (426)
                      .+|+|||+|+.|+.+|..|+++|++|+++|+.+.+.
T Consensus       137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~  172 (415)
T COG0446         137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLG  172 (415)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccc
Confidence            589999999999999999999999999999999864

>TIGR01810 betA choline dehydrogenase

Probab=97.21  E-value=0.00029  Score=71.03  Aligned_cols=33  Identities=36%  Similarity=0.449  Sum_probs=31.1

Q ss_pred             cEEEEcCChHHHHHHHHHHHcC-CcEEEEcccCC
Q 014324            8 KAVIVGGSIAGISCAHALLRAG-WDVVVLEKAGG   40 (426)
Q Consensus         8 ~V~IvGaG~aGl~~A~~L~~~G-~~v~v~E~~~~   40 (426)
                      ||||||||.+|+++|..|++.| ++|+|+|+.+.
T Consensus         1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~   34 (532)
T TIGR01810         1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGS   34 (532)
T ss_pred             CEEEECCCchHHHHHHHhccCCCCeEEEEecCCC
Confidence            7999999999999999999998 79999999964

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=97.20  E-value=0.00035  Score=70.21  Aligned_cols=37  Identities=43%  Similarity=0.456  Sum_probs=34.2

Q ss_pred             CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ..++|++|||+|.+|.++|..|+..|.+|+|+|+...
T Consensus         5 ~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~~   41 (542)
T COG2303           5 KMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGGP   41 (542)
T ss_pred             cCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCCC
Confidence            4579999999999999999999988999999999964

>PRK10262 thioredoxin reductase; Provisional

Probab=97.19  E-value=0.0073  Score=56.71  Aligned_cols=35  Identities=20%  Similarity=0.348  Sum_probs=31.8

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ..+|+|||+|..|+-+|..|++.|.+|+++++.+.
T Consensus       146 g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~  180 (321)
T PRK10262        146 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDG  180 (321)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCc
Confidence            35899999999999999999999999999998764

>PLN02785 Protein HOTHEAD

Probab=97.15  E-value=0.00048  Score=69.71  Aligned_cols=36  Identities=33%  Similarity=0.577  Sum_probs=32.9

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP   41 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   41 (426)
                      ..||+||||||.+|+.+|..|++ +.+|+|+|+...+
T Consensus        54 ~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~~   89 (587)
T PLN02785         54 SAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGVP   89 (587)
T ss_pred             ccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCCC
Confidence            46999999999999999999999 6899999999753

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=97.11  E-value=0.00047  Score=62.21  Aligned_cols=36  Identities=19%  Similarity=0.317  Sum_probs=33.1

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP   41 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   41 (426)
                      ...|.|||||.||.-+|++++++|++|.++|-++..
T Consensus         3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k   38 (439)
T COG1206           3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVK   38 (439)
T ss_pred             CCceEEEcccccccHHHHHHHHcCCcEEEEEccccc
Confidence            457999999999999999999999999999998754

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=97.10  E-value=0.0041  Score=60.84  Aligned_cols=34  Identities=32%  Similarity=0.432  Sum_probs=28.7

Q ss_pred             cEEEEcCChHHHHHHHHHHH--------------cCCcEEEEcccCCC
Q 014324            8 KAVIVGGSIAGISCAHALLR--------------AGWDVVVLEKAGGP   41 (426)
Q Consensus         8 ~V~IvGaG~aGl~~A~~L~~--------------~G~~v~v~E~~~~~   41 (426)
                      +|+|||||++|+-+|..|+.              .+.+|+++|+.+.+
T Consensus       175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l  222 (424)
T PTZ00318        175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEV  222 (424)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcc
Confidence            79999999999999998875              36788888887653

>PLN02546 glutathione reductase

Probab=97.08  E-value=0.0044  Score=62.44  Aligned_cols=101  Identities=17%  Similarity=0.104  Sum_probs=67.2

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ   85 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   85 (426)
                      ..+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+..      .  +.+..                            
T Consensus       252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~------~--~d~~~----------------------------  295 (558)
T PLN02546        252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLR------G--FDEEV----------------------------  295 (558)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEecccccc------c--cCHHH----------------------------
Confidence            35899999999999999999999999999998765321      0  00000                            


Q ss_pred             ccccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEE
Q 014324           86 ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLV  164 (426)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI  164 (426)
                                             +..+++.|.   ..|+ ++.++++.+++..++ ..+.+.   ..+++  ...+|.||
T Consensus       296 -----------------------~~~l~~~L~---~~GV~i~~~~~v~~i~~~~~-g~v~v~---~~~g~--~~~~D~Vi  343 (558)
T PLN02546        296 -----------------------RDFVAEQMS---LRGIEFHTEESPQAIIKSAD-GSLSLK---TNKGT--VEGFSHVM  343 (558)
T ss_pred             -----------------------HHHHHHHHH---HCCcEEEeCCEEEEEEEcCC-CEEEEE---ECCeE--EEecCEEE
Confidence                                   011222232   2477 889999999875333 334443   33333  24589999


Q ss_pred             eccCCchhhh
Q 014324          165 AADGCLSSIR  174 (426)
Q Consensus       165 ~AdG~~S~vR  174 (426)
                      .|.|......
T Consensus       344 va~G~~Pnt~  353 (558)
T PLN02546        344 FATGRKPNTK  353 (558)
T ss_pred             EeeccccCCC
Confidence            9999887764

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=97.04  E-value=0.0074  Score=57.50  Aligned_cols=34  Identities=21%  Similarity=0.273  Sum_probs=30.4

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCc-EEEEcccCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWD-VVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~-v~v~E~~~~   40 (426)
                      .+|+|||+|+.|+-+|..|.+.|.+ |+|++++..
T Consensus       173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~  207 (352)
T PRK12770        173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTI  207 (352)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecch
Confidence            4799999999999999999999997 999987643

>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=97.04  E-value=0.0038  Score=59.27  Aligned_cols=36  Identities=28%  Similarity=0.351  Sum_probs=32.4

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ..|||+|||||=||.-+|.+.+|.|-+.+++-.+-+
T Consensus        27 ~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld   62 (679)
T KOG2311|consen   27 STYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLD   62 (679)
T ss_pred             CcccEEEECCCccchHHHHHHHhcCCceEEeecccc
Confidence            568999999999999999999999999998876654

>PRK12831 putative oxidoreductase; Provisional

Probab=97.02  E-value=0.0046  Score=61.13  Aligned_cols=34  Identities=26%  Similarity=0.438  Sum_probs=31.4

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      .+|+|||||..|+-+|..|.+.|.+|++++++..
T Consensus       282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~  315 (464)
T PRK12831        282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSE  315 (464)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCc
Confidence            5899999999999999999999999999988664

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=97.00  E-value=0.0039  Score=53.25  Aligned_cols=34  Identities=24%  Similarity=0.222  Sum_probs=31.0

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      .+|+|||.|||+-++|+.+++..++.++||--..
T Consensus         9 e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~   42 (322)
T KOG0404|consen    9 ENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMA   42 (322)
T ss_pred             eeEEEEccCchHHHHHHHHhhcccCceEEeeeec
Confidence            4899999999999999999999999999996554

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=96.98  E-value=0.0048  Score=58.82  Aligned_cols=102  Identities=22%  Similarity=0.245  Sum_probs=75.8

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ   85 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   85 (426)
                      ...|++||+|-.|+-+|..|.-.+++|+++++.+.+-.     + + +.                               
T Consensus       213 ~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~-----~-l-f~-------------------------------  254 (478)
T KOG1336|consen  213 GGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLP-----R-L-FG-------------------------------  254 (478)
T ss_pred             CceEEEECchHHHHHHHHHHHhcCceEEEEccCccchh-----h-h-hh-------------------------------
Confidence            45699999999999999999999999999999887532     1 0 00                               


Q ss_pred             ccccccccccccccCCCcchhccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEE
Q 014324           86 ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLL  163 (426)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~v  163 (426)
                                              ..+.+...+.++ +++ ++.++.+.+++.++++..+.|.   +.||.+  +.||+|
T Consensus       255 ------------------------~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~---l~dg~~--l~adlv  305 (478)
T KOG1336|consen  255 ------------------------PSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVK---LKDGKT--LEADLV  305 (478)
T ss_pred             ------------------------HHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEE---eccCCE--eccCeE
Confidence                                    111122233333 477 9999999999977765555566   778887  899999


Q ss_pred             EeccCCchhhh
Q 014324          164 VAADGCLSSIR  174 (426)
Q Consensus       164 I~AdG~~S~vR  174 (426)
                      |.+.|+.+.+.
T Consensus       306 v~GiG~~p~t~  316 (478)
T KOG1336|consen  306 VVGIGIKPNTS  316 (478)
T ss_pred             EEeeccccccc
Confidence            99999986553

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.95  E-value=0.0057  Score=55.85  Aligned_cols=38  Identities=21%  Similarity=0.278  Sum_probs=34.4

Q ss_pred             CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324            4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP   41 (426)
Q Consensus         4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   41 (426)
                      ...+|.+|||||-.|+++|...+..|.+|.|+|..-..
T Consensus        18 ~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~l   55 (478)
T KOG0405|consen   18 VKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGL   55 (478)
T ss_pred             ccccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCc
Confidence            35799999999999999999999999999999987544

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=96.93  E-value=0.0064  Score=59.93  Aligned_cols=34  Identities=26%  Similarity=0.419  Sum_probs=31.6

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      .+|+|||||..|+-+|..|.+.|.+|+++++++.
T Consensus       273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~  306 (449)
T TIGR01316       273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTR  306 (449)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCc
Confidence            5899999999999999999999999999998764

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=96.92  E-value=0.025  Score=54.76  Aligned_cols=38  Identities=37%  Similarity=0.505  Sum_probs=33.1

Q ss_pred             CccEEEEcCChHHHHHHHHHHHc----CCcEEEEcccCCCCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRA----GWDVVVLEKAGGPPT   43 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~----G~~v~v~E~~~~~~~   43 (426)
                      +.++=|||+|+|+|++|..|-|-    |-+|.|+|+.+.++.
T Consensus         2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GG   43 (500)
T PF06100_consen    2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGG   43 (500)
T ss_pred             CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCC
Confidence            35788999999999999999986    569999999998764

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=96.74  E-value=0.0057  Score=58.30  Aligned_cols=46  Identities=26%  Similarity=0.276  Sum_probs=33.5

Q ss_pred             CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCc-hhhhhhh
Q 014324          122 PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCL-SSIRQSF  177 (426)
Q Consensus       122 ~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~-S~vR~~l  177 (426)
                      .|+ |+.++.|++++  ++  .|+     .++|+. +|.++.+|=|.|.. |++-+.+
T Consensus       222 ~GV~v~l~~~Vt~v~--~~--~v~-----~~~g~~-~I~~~tvvWaaGv~a~~~~~~l  269 (405)
T COG1252         222 LGVEVLLGTPVTEVT--PD--GVT-----LKDGEE-EIPADTVVWAAGVRASPLLKDL  269 (405)
T ss_pred             CCCEEEcCCceEEEC--CC--cEE-----EccCCe-eEecCEEEEcCCCcCChhhhhc
Confidence            488 99999999987  33  455     345553 59999999999974 5555543

>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.66  E-value=0.02  Score=58.20  Aligned_cols=64  Identities=25%  Similarity=0.231  Sum_probs=47.6

Q ss_pred             HHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCchhh
Q 014324          110 ADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSI  173 (426)
Q Consensus       110 ~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~v  173 (426)
                      ..+...|.+.+. .++ ++.++.++++..++++..+-+...+..+|+...+.|+.||.|+|..+.+
T Consensus       126 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~  191 (570)
T PRK05675        126 HALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATGGAGRI  191 (570)
T ss_pred             HHHHHHHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCCCcccc
Confidence            356666766554 488 9999999999865444444455545568888789999999999998864

>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]

Probab=96.62  E-value=0.0018  Score=61.06  Aligned_cols=40  Identities=35%  Similarity=0.423  Sum_probs=36.2

Q ss_pred             CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 014324            4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPT   43 (426)
Q Consensus         4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~   43 (426)
                      ...+|++|||+|.-||.+|..|++.|.+|+|+|++...+.
T Consensus        12 ~~~ydavvig~GhnGL~aaayl~r~g~~V~vlerrhv~gG   51 (561)
T KOG4254|consen   12 KPEYDAVVIGGGHNGLTAAAYLARYGQSVAVLERRHVIGG   51 (561)
T ss_pred             CcccceEEecCCccchhHHHHHHhcCcceEEEEEeeecCc
Confidence            3579999999999999999999999999999999966543

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=96.55  E-value=0.035  Score=56.26  Aligned_cols=35  Identities=23%  Similarity=0.250  Sum_probs=31.8

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ..+|+|||||++|+-+|..|++.|.+|+++++.+.
T Consensus       143 g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~  177 (555)
T TIGR03143       143 GMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPD  177 (555)
T ss_pred             CCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCc
Confidence            35899999999999999999999999999998764

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=96.48  E-value=0.0035  Score=52.09  Aligned_cols=32  Identities=22%  Similarity=0.333  Sum_probs=30.2

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCcEEEEcccC
Q 014324            8 KAVIVGGSIAGISCAHALLRAGWDVVVLEKAG   39 (426)
Q Consensus         8 ~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~   39 (426)
                      +|.|+|||..|.++|..|+++|++|.++.++.
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~   32 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE   32 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence            58999999999999999999999999998865

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=96.34  E-value=0.048  Score=53.96  Aligned_cols=35  Identities=23%  Similarity=0.441  Sum_probs=31.2

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCC-cEEEEcccCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGW-DVVVLEKAGG   40 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~   40 (426)
                      ..+|+|||||..|+-+|..|.+.|. +|++++++..
T Consensus       273 g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~  308 (457)
T PRK11749        273 GKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGR  308 (457)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence            3589999999999999999999998 8999988653

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=96.33  E-value=0.0053  Score=52.22  Aligned_cols=33  Identities=24%  Similarity=0.509  Sum_probs=29.1

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            8 KAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         8 ~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      +|.|||+|..|...|..++++|++|+++|.++.
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~   33 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPE   33 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHH
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChH
Confidence            589999999999999999999999999999765

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=96.33  E-value=0.0058  Score=57.13  Aligned_cols=38  Identities=29%  Similarity=0.351  Sum_probs=33.9

Q ss_pred             CCCCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccC
Q 014324            2 EKKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAG   39 (426)
Q Consensus         2 ~~~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~   39 (426)
                      |.+..++|+|||+|-.|.++|..|++.|++|+++.|..
T Consensus         1 ~~~~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~   38 (313)
T PRK06249          1 MDSETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD   38 (313)
T ss_pred             CCCcCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence            34566789999999999999999999999999998864

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=96.31  E-value=0.0034  Score=53.58  Aligned_cols=34  Identities=24%  Similarity=0.322  Sum_probs=27.7

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ++|.|||.|-.||.+|..|++.|++|+.+|.++.
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~   34 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE   34 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred             CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence            4799999999999999999999999999998875

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=96.29  E-value=0.025  Score=59.65  Aligned_cols=34  Identities=24%  Similarity=0.399  Sum_probs=31.1

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCc-EEEEcccCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWD-VVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~-v~v~E~~~~   40 (426)
                      .+|+|||||..|+-+|..+.+.|.+ |+|+++++.
T Consensus       571 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~  605 (752)
T PRK12778        571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSE  605 (752)
T ss_pred             CcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence            5899999999999999999999997 999998754

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=96.26  E-value=0.0053  Score=54.25  Aligned_cols=61  Identities=18%  Similarity=0.189  Sum_probs=45.9

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCC--C--CCcceeccChhHHHHHHHHhcC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTG--S--PTGAGLGLDRPAQRIIQSWLNG   67 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~--~--~~~~~~~l~~~~~~~l~~~~~~   67 (426)
                      ++++|||+|..|.++|..|.+.|++|+++|+.+.....  +  .....+..+..-.+.|+++|+.
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~   65 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGID   65 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCC
Confidence            47999999999999999999999999999999875321  1  1122444555566678877763

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.25  E-value=0.005  Score=60.97  Aligned_cols=34  Identities=35%  Similarity=0.645  Sum_probs=31.9

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324            8 KAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP   41 (426)
Q Consensus         8 ~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   41 (426)
                      +|+|||.|++|+++|..|.++|++|+++|++..+
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~   35 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP   35 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence            5899999999999999999999999999988764

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=96.22  E-value=0.036  Score=59.46  Aligned_cols=34  Identities=18%  Similarity=0.354  Sum_probs=31.0

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      .+|+|||||..|+-+|..+.+.|.+|+++.+++.
T Consensus       448 k~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~~  481 (944)
T PRK12779        448 KEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRTK  481 (944)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCEEEEEEecCc
Confidence            5799999999999999999999999999987753

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=96.20  E-value=0.0083  Score=55.89  Aligned_cols=40  Identities=35%  Similarity=0.523  Sum_probs=36.9

Q ss_pred             CCCCCCccEEEEcCChHHHHHHHHHHHcCC--cEEEEcccCC
Q 014324            1 MEKKEKGKAVIVGGSIAGISCAHALLRAGW--DVVVLEKAGG   40 (426)
Q Consensus         1 m~~~~~~~V~IvGaG~aGl~~A~~L~~~G~--~v~v~E~~~~   40 (426)
                      ||++...+|+|||+|-+|.++|+.|...|+  +++++|....
T Consensus         1 ~~~~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~   42 (315)
T PRK00066          1 MMKKQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKE   42 (315)
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCc
Confidence            888888999999999999999999999998  7999999665

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=96.18  E-value=0.0098  Score=49.25  Aligned_cols=32  Identities=28%  Similarity=0.300  Sum_probs=29.6

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEc
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLE   36 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E   36 (426)
                      ...+|+|||||..|..-|..|.+.|.+|+|+.
T Consensus        12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs   43 (157)
T PRK06719         12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVS   43 (157)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence            45789999999999999999999999999994

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=96.16  E-value=0.03  Score=57.93  Aligned_cols=34  Identities=32%  Similarity=0.490  Sum_probs=30.3

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCC-cEEEEcccCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGW-DVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~   40 (426)
                      .+|+|||||..|+-+|..|.+.|. +|+|+++++.
T Consensus       324 k~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~  358 (652)
T PRK12814        324 KKVVVIGGGNTAIDAARTALRLGAESVTILYRRTR  358 (652)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence            589999999999999999999996 5999987764

>TIGR02352 thiamin_ThiO glycine oxidase ThiO

Probab=96.13  E-value=0.18  Score=47.54  Aligned_cols=59  Identities=15%  Similarity=0.139  Sum_probs=41.4

Q ss_pred             ccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceE-EEEEEeccCCceEEEeecEEEeccCCchhh
Q 014324          107 AHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTV-TVKAKVLQTDEVIEIKGNLLVAADGCLSSI  173 (426)
Q Consensus       107 ~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v-~v~~~~~~~g~~~~~~~d~vI~AdG~~S~v  173 (426)
                      ++-..+...|.+.+. .|+ ++.+++|++++.++  ..+ .|.   ..+| +  ++||.||.|+|++|.-
T Consensus       134 v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~--~~~~~v~---~~~g-~--~~a~~vV~a~G~~~~~  195 (337)
T TIGR02352       134 VDPRALLKALEKALEKLGVEIIEHTEVQHIEIRG--EKVTAIV---TPSG-D--VQADQVVLAAGAWAGE  195 (337)
T ss_pred             EChHHHHHHHHHHHHHcCCEEEccceEEEEEeeC--CEEEEEE---cCCC-E--EECCEEEEcCChhhhh
Confidence            444566666666554 577 99999999998633  333 343   4455 3  7999999999998763

This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.

>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]

Probab=96.10  E-value=0.0058  Score=60.61  Aligned_cols=37  Identities=35%  Similarity=0.628  Sum_probs=34.4

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHc-CCcEEEEcccCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRA-GWDVVVLEKAGGP   41 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~-G~~v~v~E~~~~~   41 (426)
                      .+||.||||||-||.++|..|++. .++|+|+|+...+
T Consensus        56 ~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~   93 (623)
T KOG1238|consen   56 SSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP   93 (623)
T ss_pred             cCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence            569999999999999999999987 5899999999887

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.08  E-value=0.0082  Score=59.80  Aligned_cols=35  Identities=29%  Similarity=0.453  Sum_probs=31.8

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ..+|+|||+|++|+.+|..|+++|++|+++|+.+.
T Consensus        16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~   50 (480)
T PRK01438         16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD   50 (480)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence            35799999999999999999999999999997753

>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit

Probab=96.07  E-value=0.027  Score=56.70  Aligned_cols=70  Identities=13%  Similarity=0.014  Sum_probs=46.2

Q ss_pred             ccHHHHHHHHHhcC-CCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCchh-hhhhh
Q 014324          107 AHWADLHGLLYNAL-PPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSS-IRQSF  177 (426)
Q Consensus       107 ~~r~~l~~~L~~~~-~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~-vR~~l  177 (426)
                      ++-..+...+.+.+ ..|+ +..+++|+++..+++ ..+.|++.+..+|+..+++|+.||.|.|.+|. +.+.+
T Consensus       125 vdp~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~~-~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~  197 (516)
T TIGR03377       125 VDPFRLVAANVLDAQEHGARIFTYTKVTGLIREGG-RVTGVKVEDHKTGEEERIEAQVVINAAGIWAGRIAEYA  197 (516)
T ss_pred             ECHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEECC-EEEEEEEEEcCCCcEEEEEcCEEEECCCcchHHHHHhc
Confidence            34444544454444 4588 999999999986432 22235544445676667999999999999875 44443

Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.03  E-value=0.007  Score=56.00  Aligned_cols=34  Identities=26%  Similarity=0.405  Sum_probs=31.6

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      .+|.|||+|..|...|..|+++|++|+++|+.+.
T Consensus         5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~   38 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSAD   38 (292)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            4799999999999999999999999999998765

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.02  E-value=0.0074  Score=55.49  Aligned_cols=35  Identities=31%  Similarity=0.401  Sum_probs=32.6

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP   41 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   41 (426)
                      .+|.|||+|..|...|..|++.|++|+++|+.++.
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~   40 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEEL   40 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence            48999999999999999999999999999998873

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.00  E-value=0.0097  Score=58.78  Aligned_cols=37  Identities=22%  Similarity=0.431  Sum_probs=33.8

Q ss_pred             CCCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccC
Q 014324            3 KKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAG   39 (426)
Q Consensus         3 ~~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~   39 (426)
                      .+...+|+|+|+|.+|+.+|..|+++|++|+++|+..
T Consensus         2 ~~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~   38 (450)
T PRK14106          2 ELKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE   38 (450)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            4556789999999999999999999999999999975

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=95.98  E-value=0.054  Score=51.82  Aligned_cols=40  Identities=13%  Similarity=0.124  Sum_probs=29.0

Q ss_pred             CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCchh
Q 014324          122 PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSS  172 (426)
Q Consensus       122 ~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~  172 (426)
                      .++ ++.++++..+.  ++  .+.     +++|++  +.+|.||.|.|....
T Consensus       204 ~gV~v~~~~~v~~i~--~~--~v~-----~~~g~~--i~~D~vi~a~G~~p~  244 (364)
T TIGR03169       204 RGIEVHEGAPVTRGP--DG--ALI-----LADGRT--LPADAILWATGARAP  244 (364)
T ss_pred             CCCEEEeCCeeEEEc--CC--eEE-----eCCCCE--EecCEEEEccCCChh
Confidence            467 88888888775  22  333     456764  899999999997653

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=95.85  E-value=0.054  Score=56.15  Aligned_cols=34  Identities=24%  Similarity=0.435  Sum_probs=29.9

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCC-cEEEEcccCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGW-DVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~   40 (426)
                      .+|+|||||..|+-+|..+.+.|. +|+++.+++.
T Consensus       469 k~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~  503 (654)
T PRK12769        469 LNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDE  503 (654)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCC
Confidence            479999999999999999999996 6999888754

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=95.83  E-value=0.062  Score=53.23  Aligned_cols=34  Identities=21%  Similarity=0.454  Sum_probs=30.6

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCC-cEEEEcccCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGW-DVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~   40 (426)
                      .+|+|||+|..|+-+|..+.+.|. +|+|+++++.
T Consensus       283 k~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~  317 (467)
T TIGR01318       283 KRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDE  317 (467)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCc
Confidence            589999999999999999999995 7999998765

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family

Probab=95.82  E-value=0.027  Score=53.57  Aligned_cols=55  Identities=20%  Similarity=0.233  Sum_probs=38.9

Q ss_pred             HHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCch
Q 014324          109 WADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLS  171 (426)
Q Consensus       109 r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S  171 (426)
                      -..+..+|...++ .|+ |+++++|.+++  ++  .+.+.   ..++. ..++||.||.|+|..|
T Consensus        85 A~sVv~~L~~~l~~~gV~i~~~~~V~~i~--~~--~~~v~---~~~~~-~~~~a~~vIlAtGG~s  141 (376)
T TIGR03862        85 AAPLLRAWLKRLAEQGVQFHTRHRWIGWQ--GG--TLRFE---TPDGQ-STIEADAVVLALGGAS  141 (376)
T ss_pred             HHHHHHHHHHHHHHCCCEEEeCCEEEEEe--CC--cEEEE---ECCCc-eEEecCEEEEcCCCcc
Confidence            3667777777776 488 99999999992  33  23343   22222 2389999999999876

This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=95.73  E-value=0.012  Score=54.96  Aligned_cols=33  Identities=24%  Similarity=0.418  Sum_probs=31.4

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            8 KAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         8 ~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      +|.|||+|..|..+|..|+++|++|+++|+.+.
T Consensus         4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~   36 (308)
T PRK06129          4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADPA   36 (308)
T ss_pred             EEEEECccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence            699999999999999999999999999999875

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=95.69  E-value=0.038  Score=59.98  Aligned_cols=33  Identities=21%  Similarity=0.301  Sum_probs=29.1

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCC-cEEEEcccC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGW-DVVVLEKAG   39 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~   39 (426)
                      .+|+|||+|+.|+-+|..|++.|. .|+|+|..+
T Consensus       318 k~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~  351 (985)
T TIGR01372       318 KRIVVATNNDSAYRAAADLLAAGIAVVAIIDARA  351 (985)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCceEEEEccCc
Confidence            589999999999999999999996 578888654

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.68  E-value=0.017  Score=53.80  Aligned_cols=34  Identities=26%  Similarity=0.388  Sum_probs=31.8

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      .+|+|||+|..|...|..++.+|++|+++|..+.
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~   41 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPG   41 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            4699999999999999999999999999998875

>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Probab=95.67  E-value=0.58  Score=45.04  Aligned_cols=59  Identities=15%  Similarity=0.075  Sum_probs=44.1

Q ss_pred             ccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCchh
Q 014324          107 AHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSS  172 (426)
Q Consensus       107 ~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~  172 (426)
                      ++-..+.+.|.+.+..|+ +++++.|.+++.+.  ..+.++   +.+|..  ++||.||.|+|.++.
T Consensus       132 idp~~~~~~l~~~~~~G~~i~~~~~V~~i~~~~--~~~~v~---t~~g~~--~~a~~vV~a~G~~~~  191 (381)
T TIGR03197       132 LSPPQLCRALLAHAGIRLTLHFNTEITSLERDG--EGWQLL---DANGEV--IAASVVVLANGAQAG  191 (381)
T ss_pred             cChHHHHHHHHhccCCCcEEEeCCEEEEEEEcC--CeEEEE---eCCCCE--EEcCEEEEcCCcccc
Confidence            455667677777766677 99999999998643  345555   556664  789999999999875

In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=95.67  E-value=0.015  Score=47.82  Aligned_cols=31  Identities=29%  Similarity=0.472  Sum_probs=29.5

Q ss_pred             EEEEcCChHHHHHHHHHHHcCCcEEEEcccC
Q 014324            9 AVIVGGSIAGISCAHALLRAGWDVVVLEKAG   39 (426)
Q Consensus         9 V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~   39 (426)
                      |+|+|+|-.|+..|..|++.|.+|.++.|..
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~   31 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP   31 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence            7899999999999999999999999998877

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=95.67  E-value=0.12  Score=51.41  Aligned_cols=33  Identities=24%  Similarity=0.482  Sum_probs=27.3

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCC-cEEEEcccC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGW-DVVVLEKAG   39 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~   39 (426)
                      .+|+|||||..|+-+|..+.+.|. +|++++...
T Consensus       282 k~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~  315 (471)
T PRK12810        282 KHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMP  315 (471)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCeEEEccccC
Confidence            579999999999999998888886 677665444

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=95.64  E-value=0.017  Score=50.25  Aligned_cols=36  Identities=28%  Similarity=0.364  Sum_probs=31.9

Q ss_pred             CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccC
Q 014324            4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAG   39 (426)
Q Consensus         4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~   39 (426)
                      ....+|+|||||.+|..-+..|.+.|.+|+|++...
T Consensus         7 l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~   42 (205)
T TIGR01470         7 LEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL   42 (205)
T ss_pred             cCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            345689999999999999999999999999998643

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.63  E-value=0.016  Score=53.49  Aligned_cols=34  Identities=18%  Similarity=0.338  Sum_probs=31.4

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      .+|.|||+|..|...|..|+++|++|+++|+++.
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~   37 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDE   37 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence            4799999999999999999999999999998764

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=95.53  E-value=0.024  Score=53.01  Aligned_cols=41  Identities=20%  Similarity=0.232  Sum_probs=35.5

Q ss_pred             CCCCCCccEEEEcCChHHHHHHHHHHHcCC-cEEEEcccCCC
Q 014324            1 MEKKEKGKAVIVGGSIAGISCAHALLRAGW-DVVVLEKAGGP   41 (426)
Q Consensus         1 m~~~~~~~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~~   41 (426)
                      |+.....+|+|||+|-.|.+.|..++..|+ +++++|..+..
T Consensus         1 ~~~~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~   42 (321)
T PTZ00082          1 MTMIKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNI   42 (321)
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCch
Confidence            444456799999999999999999999996 99999998874

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=95.50  E-value=0.043  Score=52.56  Aligned_cols=43  Identities=23%  Similarity=0.311  Sum_probs=32.6

Q ss_pred             CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCchhhh
Q 014324          122 PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSIR  174 (426)
Q Consensus       122 ~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~vR  174 (426)
                      .++ +++++.++.+....  ..+.     +.+|++  ++++.+|.|+|. |+.+
T Consensus       140 ~gIe~~~~t~v~~~D~~~--K~l~-----~~~Ge~--~kys~LilATGs-~~~~  183 (478)
T KOG1336|consen  140 KGIELILGTSVVKADLAS--KTLV-----LGNGET--LKYSKLIIATGS-SAKT  183 (478)
T ss_pred             cCceEEEcceeEEeeccc--cEEE-----eCCCce--eecceEEEeecC-cccc
Confidence            366 88999999998643  3444     678887  899999999999 4443

>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function

Probab=95.44  E-value=0.021  Score=55.23  Aligned_cols=39  Identities=23%  Similarity=0.262  Sum_probs=31.6

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPT   43 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~   43 (426)
                      +.+||+|+|.|+.-..+|.+|++.|.+|+.+|+++..+.
T Consensus         3 ~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg   41 (438)
T PF00996_consen    3 EEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGG   41 (438)
T ss_dssp             SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCG
T ss_pred             ccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCC
Confidence            579999999999999999999999999999999998764

This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=95.44  E-value=0.009  Score=45.63  Aligned_cols=37  Identities=27%  Similarity=0.336  Sum_probs=31.4

Q ss_pred             CCCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccC
Q 014324            3 KKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAG   39 (426)
Q Consensus         3 ~~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~   39 (426)
                      +.+..+|+|||||..|..-+..|.+.|.+|+|+.+..
T Consensus         4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~   40 (103)
T PF13241_consen    4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI   40 (103)
T ss_dssp             --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence            3456789999999999999999999999999997764

>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]

Probab=95.43  E-value=0.068  Score=50.51  Aligned_cols=42  Identities=31%  Similarity=0.247  Sum_probs=32.9

Q ss_pred             CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCc
Q 014324          122 PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCL  170 (426)
Q Consensus       122 ~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~  170 (426)
                      .++ +..++.|..+.  ++  .+++.   ..+|+..+|.+-++|-|+|..
T Consensus       286 ~~I~~~~~t~Vk~V~--~~--~I~~~---~~~g~~~~iPYG~lVWatG~~  328 (491)
T KOG2495|consen  286 DGIDLDTGTMVKKVT--EK--TIHAK---TKDGEIEEIPYGLLVWATGNG  328 (491)
T ss_pred             ccceeecccEEEeec--Cc--EEEEE---cCCCceeeecceEEEecCCCC
Confidence            477 88899888876  22  45555   458888889999999999974

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=95.40  E-value=0.02  Score=53.06  Aligned_cols=38  Identities=29%  Similarity=0.334  Sum_probs=33.5

Q ss_pred             CCCCCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            1 MEKKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         1 m~~~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      |+.+  .+|.|||+|..|...|..|+++|++|+++|+++.
T Consensus         1 ~~~~--~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~   38 (295)
T PLN02545          1 MAEI--KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPA   38 (295)
T ss_pred             CCCc--CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence            5554  3699999999999999999999999999998775

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=95.38  E-value=0.017  Score=56.13  Aligned_cols=34  Identities=15%  Similarity=0.173  Sum_probs=32.0

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ++|.|||.|-.|+.+|..|+++|++|+++|+++.
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~   37 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH   37 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence            5799999999999999999999999999998765

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=95.36  E-value=0.13  Score=55.29  Aligned_cols=35  Identities=31%  Similarity=0.450  Sum_probs=30.1

Q ss_pred             CccEEEEcCChHHHHHHHHHHHc-CC-cEEEEcccCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRA-GW-DVVVLEKAGG   40 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~-G~-~v~v~E~~~~   40 (426)
                      ..+|+|||||..|+-+|..+.+. |. +|++++++..
T Consensus       666 GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~~  702 (1012)
T TIGR03315       666 GKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTK  702 (1012)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccCc
Confidence            35899999999999999988876 85 7999998764

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=95.32  E-value=0.024  Score=52.72  Aligned_cols=34  Identities=26%  Similarity=0.230  Sum_probs=31.4

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAG   39 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~   39 (426)
                      +++|+|+|+|..|...|..|++.|.+|+++.|..
T Consensus         2 ~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~   35 (305)
T PRK05708          2 SMTWHILGAGSLGSLWACRLARAGLPVRLILRDR   35 (305)
T ss_pred             CceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence            3579999999999999999999999999999964

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=95.30  E-value=0.027  Score=47.28  Aligned_cols=36  Identities=25%  Similarity=0.289  Sum_probs=30.6

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      .+.+|+|+|+|.+|..||..|...|.+|+++|....
T Consensus        19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~   54 (168)
T PF01262_consen   19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPE   54 (168)
T ss_dssp             -T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHH
T ss_pred             CCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHH
Confidence            457999999999999999999999999999998654

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=95.19  E-value=0.026  Score=48.92  Aligned_cols=34  Identities=32%  Similarity=0.409  Sum_probs=30.9

Q ss_pred             CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcc
Q 014324            4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEK   37 (426)
Q Consensus         4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~   37 (426)
                      ....+|+|||||-.|...|..|.+.|.+|+|+++
T Consensus         8 l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~   41 (202)
T PRK06718          8 LSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISP   41 (202)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcC
Confidence            4567999999999999999999999999999975

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=95.18  E-value=0.081  Score=53.09  Aligned_cols=35  Identities=26%  Similarity=0.398  Sum_probs=29.4

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ..+|+|||+|.+|.=.|..|++...+|.+.=|+..
T Consensus       183 gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~  217 (531)
T PF00743_consen  183 GKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGA  217 (531)
T ss_dssp             TSEEEEESSSHHHHHHHHHHTTTSCCEEEECC---
T ss_pred             CCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEeccc
Confidence            46899999999999999999999889988877754

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.17  E-value=0.023  Score=52.43  Aligned_cols=33  Identities=21%  Similarity=0.391  Sum_probs=31.1

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            8 KAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         8 ~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      +|+|||+|..|...|..|+++|++|+++|+++.
T Consensus         3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~   35 (288)
T PRK09260          3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQE   35 (288)
T ss_pred             EEEEECccHHHHHHHHHHHhCCCcEEEEeCCHH
Confidence            699999999999999999999999999998765

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=95.16  E-value=0.024  Score=52.74  Aligned_cols=32  Identities=34%  Similarity=0.505  Sum_probs=30.0

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCcEEEEcccC
Q 014324            8 KAVIVGGSIAGISCAHALLRAGWDVVVLEKAG   39 (426)
Q Consensus         8 ~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~   39 (426)
                      +|+|||+|-.|.++|..|++.|.+|++++|..
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~   33 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRG   33 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCh
Confidence            69999999999999999999999999999854

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.13  E-value=0.027  Score=51.77  Aligned_cols=34  Identities=26%  Similarity=0.422  Sum_probs=31.5

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      .+|+|||+|..|...|..|+++|++|+++|.++.
T Consensus         4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~   37 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDA   37 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHH
Confidence            3699999999999999999999999999998765

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=95.13  E-value=0.027  Score=52.05  Aligned_cols=34  Identities=24%  Similarity=0.466  Sum_probs=31.5

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      .+|.|||+|..|...|..|+++|++|+++|+.+.
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~   37 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEE   37 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence            4699999999999999999999999999998765

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=95.10  E-value=0.028  Score=52.34  Aligned_cols=30  Identities=33%  Similarity=0.505  Sum_probs=29.0

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCcEEEEcc
Q 014324            8 KAVIVGGSIAGISCAHALLRAGWDVVVLEK   37 (426)
Q Consensus         8 ~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~   37 (426)
                      +|+|||+|..|.++|..|+++|.+|+++++
T Consensus         2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r   31 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR   31 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence            699999999999999999999999999988

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=95.04  E-value=0.027  Score=52.76  Aligned_cols=34  Identities=21%  Similarity=0.369  Sum_probs=32.1

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ++|.|||.|=+||+.|..|++.|++|+++|..+.
T Consensus         1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~   34 (414)
T COG1004           1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDES   34 (414)
T ss_pred             CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHH
Confidence            4799999999999999999999999999998876

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.98  E-value=0.033  Score=52.04  Aligned_cols=34  Identities=26%  Similarity=0.451  Sum_probs=31.2

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      .+|.|||+|..|...|..|++.|++|+++|+...
T Consensus         5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~   38 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEG   38 (311)
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            4699999999999999999999999999997654

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=94.95  E-value=0.034  Score=52.67  Aligned_cols=33  Identities=24%  Similarity=0.369  Sum_probs=30.4

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAG   39 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~   39 (426)
                      ++|+|||+|..|...|..|+++|++|+++++..
T Consensus         3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~   35 (341)
T PRK08229          3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRAR   35 (341)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHH
Confidence            369999999999999999999999999999853

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=94.91  E-value=0.18  Score=54.69  Aligned_cols=34  Identities=18%  Similarity=0.327  Sum_probs=28.8

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCc-EEEEcccCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWD-VVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~-v~v~E~~~~   40 (426)
                      .+|+|||||..|+-+|..+.+.|.+ |+++.++..
T Consensus       572 k~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~~  606 (1006)
T PRK12775        572 KSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRSE  606 (1006)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeecCc
Confidence            5899999999999999999999985 777766543

>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A

Probab=94.89  E-value=0.031  Score=44.99  Aligned_cols=32  Identities=22%  Similarity=0.241  Sum_probs=28.4

Q ss_pred             EEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            9 AVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         9 V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ++|+|+|+.+.++|..++..|++|+|+|.+++
T Consensus         1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e   32 (136)
T PF13478_consen    1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE   32 (136)
T ss_dssp             EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred             CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence            58999999999999999999999999999976

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=94.87  E-value=0.037  Score=51.53  Aligned_cols=33  Identities=33%  Similarity=0.520  Sum_probs=30.3

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCC--cEEEEcccCC
Q 014324            8 KAVIVGGSIAGISCAHALLRAGW--DVVVLEKAGG   40 (426)
Q Consensus         8 ~V~IvGaG~aGl~~A~~L~~~G~--~v~v~E~~~~   40 (426)
                      +|.|||+|.+|.++|+.|+++|+  +++++|+...
T Consensus         2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~   36 (308)
T cd05292           2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKA   36 (308)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCch
Confidence            69999999999999999999994  7999998765

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=94.84  E-value=0.043  Score=50.92  Aligned_cols=34  Identities=26%  Similarity=0.467  Sum_probs=30.7

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCC-cEEEEcccCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGW-DVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~   40 (426)
                      ++|.|||+|..|+..|..|+.+|+ +|+++|....
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~   36 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEG   36 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCC
Confidence            579999999999999999999887 8999999544

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>PRK04148 hypothetical protein; Provisional

Probab=94.78  E-value=0.03  Score=44.51  Aligned_cols=34  Identities=26%  Similarity=0.334  Sum_probs=30.5

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ..+|++||.| .|...|..|++.|++|+.+|.++.
T Consensus        17 ~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~   50 (134)
T PRK04148         17 NKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK   50 (134)
T ss_pred             CCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence            3579999999 999999999999999999988775

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=94.74  E-value=0.055  Score=43.96  Aligned_cols=34  Identities=24%  Similarity=0.387  Sum_probs=30.4

Q ss_pred             ccEEEEcC-ChHHHHHHHHHHHcCC--cEEEEcccCC
Q 014324            7 GKAVIVGG-SIAGISCAHALLRAGW--DVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGa-G~aGl~~A~~L~~~G~--~v~v~E~~~~   40 (426)
                      ++|.|||+ |..|.++|+.|...++  +++++|....
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~   37 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINED   37 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHH
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcc
Confidence            47999999 9999999999999975  6999998865

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=94.70  E-value=0.037  Score=55.22  Aligned_cols=41  Identities=20%  Similarity=0.364  Sum_probs=34.9

Q ss_pred             CCCCCC-ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324            1 MEKKEK-GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP   41 (426)
Q Consensus         1 m~~~~~-~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   41 (426)
                      ||.+.. .+|.|||+|..|...|..|+++|++|+++|+.+..
T Consensus         1 ~~~~~~i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~   42 (507)
T PRK08268          1 MMALPSIATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGA   42 (507)
T ss_pred             CCccCCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHH
Confidence            444333 46999999999999999999999999999998873

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=94.70  E-value=0.046  Score=50.92  Aligned_cols=40  Identities=23%  Similarity=0.356  Sum_probs=33.6

Q ss_pred             CCCCCCccEEEEcCChHHHHHHHHHHHcCC--cEEEEcccCC
Q 014324            1 MEKKEKGKAVIVGGSIAGISCAHALLRAGW--DVVVLEKAGG   40 (426)
Q Consensus         1 m~~~~~~~V~IvGaG~aGl~~A~~L~~~G~--~v~v~E~~~~   40 (426)
                      |..+...+|+|||+|..|.++|..|.+.|+  +|.++++...
T Consensus         1 ~~~~~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~   42 (307)
T PRK07502          1 MSAPLFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAE   42 (307)
T ss_pred             CCccCCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHH
Confidence            555555689999999999999999999985  7888987653

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=94.68  E-value=0.035  Score=54.92  Aligned_cols=36  Identities=19%  Similarity=0.283  Sum_probs=32.5

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ..-+|+|+|+|++|+.++..++..|.+|+++|.++.
T Consensus       164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~  199 (509)
T PRK09424        164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPE  199 (509)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            356899999999999999999999999999998765

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=94.68  E-value=0.22  Score=53.35  Aligned_cols=34  Identities=32%  Similarity=0.457  Sum_probs=29.5

Q ss_pred             ccEEEEcCChHHHHHHHHHHHc-C-CcEEEEcccCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRA-G-WDVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~-G-~~v~v~E~~~~   40 (426)
                      .+|+|||||.+|+-+|..+.+. | .+|+++.+++.
T Consensus       669 KrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~~  704 (1019)
T PRK09853        669 KHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTK  704 (1019)
T ss_pred             CEEEEECCChHHHHHHHHHHhcCCCceEEEEEccCc
Confidence            5899999999999999988877 5 48999998764

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=94.64  E-value=0.094  Score=53.02  Aligned_cols=34  Identities=35%  Similarity=0.571  Sum_probs=30.1

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ..-+|||||.-||-+|..|...|++|.|++-.+.
T Consensus       146 ~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~  179 (793)
T COG1251         146 KKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPT  179 (793)
T ss_pred             CCcEEEccchhhhHHHHHHHhCCCceEEEeecch
Confidence            3468999999999999999999999999876654

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.62  E-value=0.055  Score=53.32  Aligned_cols=38  Identities=24%  Similarity=0.267  Sum_probs=33.6

Q ss_pred             CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324            4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP   41 (426)
Q Consensus         4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   41 (426)
                      +...+|+|+|.|.+|+++|..|+++|.+|+++|....+
T Consensus         3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~   40 (445)
T PRK04308          3 FQNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKP   40 (445)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCc
Confidence            44568999999999999999999999999999977653

>TIGR00518 alaDH alanine dehydrogenase

Probab=94.55  E-value=0.051  Score=51.89  Aligned_cols=36  Identities=28%  Similarity=0.434  Sum_probs=32.3

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ...+|+|||+|.+|+.+|..|.+.|.+|+++|++..
T Consensus       166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~  201 (370)
T TIGR00518       166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINID  201 (370)
T ss_pred             CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHH
Confidence            456899999999999999999999999999998653

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=94.50  E-value=0.05  Score=42.39  Aligned_cols=32  Identities=34%  Similarity=0.462  Sum_probs=29.0

Q ss_pred             EEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            9 AVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         9 V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      |+|+|.|..|..++..|.+.+.+|+++|+.+.
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~   32 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPE   32 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSHH
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcH
Confidence            78999999999999999998889999999975

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=94.42  E-value=0.039  Score=53.75  Aligned_cols=33  Identities=21%  Similarity=0.301  Sum_probs=31.2

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            8 KAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         8 ~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      +|.|||.|-.|+.+|..|+++|++|+++|+++.
T Consensus         2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~   34 (411)
T TIGR03026         2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE   34 (411)
T ss_pred             EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence            699999999999999999999999999998765

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=94.40  E-value=0.054  Score=43.63  Aligned_cols=35  Identities=20%  Similarity=0.355  Sum_probs=31.2

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCC-cEEEEcccCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGW-DVVVLEKAGG   40 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~   40 (426)
                      +.+|+|+|+|-.|...|..|++.|+ +++|+|...-
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v   37 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIV   37 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcce
Confidence            4689999999999999999999998 6999998765

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>TIGR02734 crtI_fam phytoene desaturase

Probab=94.37  E-value=2.9  Score=41.90  Aligned_cols=62  Identities=10%  Similarity=0.080  Sum_probs=44.2

Q ss_pred             HHHHHHHHhcCCC-Ce-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCchhhhhhh
Q 014324          110 ADLHGLLYNALPP-EI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSIRQSF  177 (426)
Q Consensus       110 ~~l~~~L~~~~~~-~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~vR~~l  177 (426)
                      ..+.+.|.+.+++ |+ |+++++|.++..++ +..+.|+   ..+|+.  ++||.||.|.+....+.+.+
T Consensus       219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~-~~~~~V~---~~~g~~--~~ad~VI~a~~~~~~~~~l~  282 (502)
T TIGR02734       219 GALVAAMAKLAEDLGGELRLNAEVIRIETEG-GRATAVH---LADGER--LDADAVVSNADLHHTYRRLL  282 (502)
T ss_pred             HHHHHHHHHHHHHCCCEEEECCeEEEEEeeC-CEEEEEE---ECCCCE--EECCEEEECCcHHHHHHHhc
Confidence            4566667776654 77 99999999998653 3334555   566765  78999999998876665544

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=94.35  E-value=0.067  Score=49.87  Aligned_cols=36  Identities=22%  Similarity=0.257  Sum_probs=32.9

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      +.++|.|||+|-.|.++|..|+++|++|++++|...
T Consensus         3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~   38 (308)
T PRK14619          3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG   38 (308)
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            456899999999999999999999999999998764

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.31  E-value=0.067  Score=52.79  Aligned_cols=36  Identities=22%  Similarity=0.279  Sum_probs=32.3

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ....|+|+|+|.+|+++|..|++.|.+|++.|+...
T Consensus         4 ~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~   39 (447)
T PRK02472          4 QNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPF   39 (447)
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCc
Confidence            446799999999999999999999999999997654

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=94.28  E-value=0.073  Score=46.05  Aligned_cols=36  Identities=25%  Similarity=0.267  Sum_probs=32.4

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCC-cEEEEcccCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGW-DVVVLEKAGG   40 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~   40 (426)
                      ...+|+|||+|-.|...|..|++.|+ +++++|...-
T Consensus        20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~v   56 (200)
T TIGR02354        20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVV   56 (200)
T ss_pred             hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEE
Confidence            45789999999999999999999999 6999998854

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=94.25  E-value=0.06  Score=50.66  Aligned_cols=32  Identities=25%  Similarity=0.216  Sum_probs=30.0

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCcEEEEcccC
Q 014324            8 KAVIVGGSIAGISCAHALLRAGWDVVVLEKAG   39 (426)
Q Consensus         8 ~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~   39 (426)
                      +|.|||+|..|.++|..|+++|.+|.++.|+.
T Consensus         2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~   33 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH   33 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence            59999999999999999999999999998854

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=94.21  E-value=0.37  Score=49.88  Aligned_cols=34  Identities=18%  Similarity=0.356  Sum_probs=29.8

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCC-cEEEEcccCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGW-DVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~   40 (426)
                      .+|+|||+|..|+-+|..+.+.|. +|+++++++.
T Consensus       452 k~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~  486 (639)
T PRK12809        452 KRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDE  486 (639)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence            589999999999999998888885 7999988754

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=94.19  E-value=0.075  Score=50.03  Aligned_cols=34  Identities=15%  Similarity=0.146  Sum_probs=31.4

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ++|.|||+|..|.+.|..|+++|++|++++|.+.
T Consensus         5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~   38 (328)
T PRK14618          5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRPE   38 (328)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            5799999999999999999999999999999654

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=94.19  E-value=0.06  Score=51.79  Aligned_cols=35  Identities=31%  Similarity=0.315  Sum_probs=31.8

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ...|+|+|+|+.|+.+|..++..|.+|+++|..+.
T Consensus       202 GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~  236 (413)
T cd00401         202 GKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPI  236 (413)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChh
Confidence            35899999999999999999999999999998764

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=94.14  E-value=0.064  Score=51.94  Aligned_cols=36  Identities=28%  Similarity=0.465  Sum_probs=34.0

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP   41 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   41 (426)
                      ..+|+|+|-|-+|+++|..|.+.|.+|+++|.++.+
T Consensus         7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~   42 (448)
T COG0771           7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP   42 (448)
T ss_pred             CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence            578999999999999999999999999999988876

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=94.14  E-value=0.044  Score=53.40  Aligned_cols=48  Identities=15%  Similarity=0.048  Sum_probs=34.2

Q ss_pred             eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCchhhhhhhcC
Q 014324          125 FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSIRQSFLS  179 (426)
Q Consensus       125 i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~vR~~l~~  179 (426)
                      |+++++|+.|+.++  ..|+++   .++|+.  ++||.||.|.......+..+.+
T Consensus       226 i~l~~~V~~I~~~~--~~v~v~---~~~g~~--~~ad~VI~a~p~~~l~~i~~~p  273 (450)
T PF01593_consen  226 IRLNTPVTRIERED--GGVTVT---TEDGET--IEADAVISAVPPSVLKNILLLP  273 (450)
T ss_dssp             EESSEEEEEEEEES--SEEEEE---ETTSSE--EEESEEEE-S-HHHHHTSEEES
T ss_pred             eecCCcceeccccc--cccccc---cccceE--EecceeeecCchhhhhhhhhcc
Confidence            99999999999765  466666   677874  8999999998776554424333

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=94.08  E-value=0.11  Score=41.92  Aligned_cols=36  Identities=17%  Similarity=0.304  Sum_probs=31.6

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCc-EEEEcccCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWD-VVVLEKAGG   40 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~-v~v~E~~~~   40 (426)
                      ...+|+|||+|-+|-+++..|+..|.+ ++|+-|...
T Consensus        11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~   47 (135)
T PF01488_consen   11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPE   47 (135)
T ss_dssp             TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHH
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHH
Confidence            457899999999999999999999987 999887543

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=94.06  E-value=0.069  Score=53.28  Aligned_cols=34  Identities=35%  Similarity=0.453  Sum_probs=31.5

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      .+|.|||+|..|...|..|+++|++|+|+|+.+.
T Consensus         5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~   38 (495)
T PRK07531          5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPE   38 (495)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            3799999999999999999999999999999765

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=94.06  E-value=0.064  Score=50.40  Aligned_cols=33  Identities=27%  Similarity=0.381  Sum_probs=30.6

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            8 KAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         8 ~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      +|.|||+|..|..+|..|++.|++|.++++.+.
T Consensus         3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~   35 (325)
T PRK00094          3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDPE   35 (325)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCEEEEEECCHH
Confidence            699999999999999999999999999998653

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=94.03  E-value=0.057  Score=49.53  Aligned_cols=33  Identities=27%  Similarity=0.215  Sum_probs=30.3

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            8 KAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         8 ~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      +|.|||.|..|.++|..|.++|++|.++++++.
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~   34 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRES   34 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            699999999999999999999999999998653

>PRK07326 short chain dehydrogenase; Provisional

Probab=93.97  E-value=0.086  Score=46.84  Aligned_cols=39  Identities=31%  Similarity=0.445  Sum_probs=33.7

Q ss_pred             CCCCCCccEEEEcC-ChHHHHHHHHHHHcCCcEEEEcccC
Q 014324            1 MEKKEKGKAVIVGG-SIAGISCAHALLRAGWDVVVLEKAG   39 (426)
Q Consensus         1 m~~~~~~~V~IvGa-G~aGl~~A~~L~~~G~~v~v~E~~~   39 (426)
                      ||.+....|+|+|| |..|..+|..|.++|.+|+++.|.+
T Consensus         1 m~~~~~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~   40 (237)
T PRK07326          1 MMSLKGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQ   40 (237)
T ss_pred             CCCCCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCH
Confidence            66666678999986 8899999999999999999998764

>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.97  E-value=0.088  Score=51.79  Aligned_cols=40  Identities=28%  Similarity=0.427  Sum_probs=35.7

Q ss_pred             CCCCCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            1 MEKKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         1 m~~~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ||.....+|.|+|-|-+|++++..|+++|.+|++.|....
T Consensus         1 ~~~~~~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~   40 (438)
T PRK03806          1 MADYQGKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRIT   40 (438)
T ss_pred             CcccCCCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCC
Confidence            7776667899999999999999999999999999997654

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=93.96  E-value=0.1  Score=43.65  Aligned_cols=36  Identities=31%  Similarity=0.248  Sum_probs=31.5

Q ss_pred             CCCccEEEEcCCh-HHHHHHHHHHHcCCcEEEEcccC
Q 014324            4 KEKGKAVIVGGSI-AGISCAHALLRAGWDVVVLEKAG   39 (426)
Q Consensus         4 ~~~~~V~IvGaG~-aGl~~A~~L~~~G~~v~v~E~~~   39 (426)
                      ....+|+|||+|- +|..+|..|.++|.+|+++.|..
T Consensus        42 l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~   78 (168)
T cd01080          42 LAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT   78 (168)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc
Confidence            3567999999996 79999999999999999999864

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC

Probab=93.85  E-value=0.091  Score=47.02  Aligned_cols=37  Identities=16%  Similarity=0.170  Sum_probs=33.6

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP   41 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   41 (426)
                      .+.+++|+|||+.+..+|..++..|++|+|+|.++..
T Consensus        99 p~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~~  135 (246)
T TIGR02964        99 PAPHVVLFGAGHVGRALVRALAPLPCRVTWVDSREAE  135 (246)
T ss_pred             CCCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCccc
Confidence            4579999999999999999999999999999987663

Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=93.81  E-value=0.064  Score=48.43  Aligned_cols=37  Identities=22%  Similarity=0.250  Sum_probs=32.9

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCC-cEEEEcccCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGW-DVVVLEKAGGP   41 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~~   41 (426)
                      ....|+|||+|-.|..+|..|++.|+ +++|+|...-.
T Consensus        29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~   66 (268)
T PRK15116         29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVC   66 (268)
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEec
Confidence            45789999999999999999999996 79999977653

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.75  E-value=0.088  Score=51.91  Aligned_cols=39  Identities=28%  Similarity=0.378  Sum_probs=32.6

Q ss_pred             CCCCCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            1 MEKKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         1 m~~~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      |......+|+|+|.|.+|.++|..|.+ |.+|+|+|..+.
T Consensus         1 ~~~~~~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~~   39 (454)
T PRK01368          1 MNSHTKQKIGVFGLGKTGISVYEELQN-KYDVIVYDDLKA   39 (454)
T ss_pred             CcCCCCCEEEEEeecHHHHHHHHHHhC-CCEEEEECCCCC
Confidence            444455789999999999999999995 999999996543

>PRK06223 malate dehydrogenase; Reviewed

Probab=93.75  E-value=0.094  Score=48.88  Aligned_cols=34  Identities=32%  Similarity=0.449  Sum_probs=30.7

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCC-cEEEEcccCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGW-DVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~   40 (426)
                      ++|+|||+|..|.+.|..++..|+ +|+++|...+
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~   37 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEG   37 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCc
Confidence            489999999999999999999876 9999999655

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=93.74  E-value=0.1  Score=43.60  Aligned_cols=34  Identities=26%  Similarity=0.381  Sum_probs=29.5

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      .+|.|||-|-.|...|..|.++|++|.++|+.+.
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~   35 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPE   35 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHH
T ss_pred             CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchh
Confidence            3799999999999999999999999999998764

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=93.73  E-value=0.74  Score=43.54  Aligned_cols=52  Identities=13%  Similarity=0.187  Sum_probs=41.5

Q ss_pred             CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCchhhh
Q 014324          122 PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSIR  174 (426)
Q Consensus       122 ~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~vR  174 (426)
                      ..+ ++-++++.+++...+ ..+.+++++...|+.++++.|.||.|+|-+-.+-
T Consensus       291 ~~v~l~~~~ev~~~~~~G~-g~~~l~~~~~~~~~~~t~~~D~vIlATGY~~~~P  343 (436)
T COG3486         291 PDVRLLSLSEVQSVEPAGD-GRYRLTLRHHETGELETVETDAVILATGYRRAVP  343 (436)
T ss_pred             CCeeeccccceeeeecCCC-ceEEEEEeeccCCCceEEEeeEEEEecccccCCc
Confidence            356 889999999985444 3388888888889999999999999999884433

>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=93.68  E-value=0.12  Score=47.96  Aligned_cols=43  Identities=19%  Similarity=0.214  Sum_probs=38.5

Q ss_pred             CCCCCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 014324            1 MEKKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPT   43 (426)
Q Consensus         1 m~~~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~   43 (426)
                      |-....+||+|+|.|+.=..++.+|+..|.+|+.||+++..+.
T Consensus         1 Md~~~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~   43 (434)
T COG5044           1 MDEETLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGS   43 (434)
T ss_pred             CCccccccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCc
Confidence            4445579999999999999999999999999999999998764

>PLN02852 ferredoxin-NADP+ reductase

Probab=93.62  E-value=0.95  Score=44.94  Aligned_cols=22  Identities=36%  Similarity=0.678  Sum_probs=20.2

Q ss_pred             ccEEEEcCChHHHHHHHHHHHc
Q 014324            7 GKAVIVGGSIAGISCAHALLRA   28 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~   28 (426)
                      .+|+|||+|..|+-+|..|.+.
T Consensus       167 k~VvVIGgGnvAlD~Ar~L~~~  188 (491)
T PLN02852        167 DTAVVLGQGNVALDCARILLRP  188 (491)
T ss_pred             CEEEEECCCHHHHHHHHHHHhC
Confidence            5799999999999999998876

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=93.54  E-value=8.4  Score=38.06  Aligned_cols=53  Identities=11%  Similarity=0.110  Sum_probs=36.0

Q ss_pred             HHHHHHHhcCCCCeeEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCc
Q 014324          111 DLHGLLYNALPPEIFLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCL  170 (426)
Q Consensus       111 ~l~~~L~~~~~~~~i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~  170 (426)
                      .|-+.|.+.+..+.|+++++|..|..+++  .++|+   ..+|++  ++||.||.|.-..
T Consensus       226 ~l~~~l~~~l~~~~i~~~~~V~~I~~~~~--~~~v~---~~~g~~--~~ad~VI~t~P~~  278 (462)
T TIGR00562       226 TLPEEIEKRLKLTKVYKGTKVTKLSHRGS--NYTLE---LDNGVT--VETDSVVVTAPHK  278 (462)
T ss_pred             HHHHHHHHHhccCeEEcCCeEEEEEecCC--cEEEE---ECCCcE--EEcCEEEECCCHH
Confidence            34445555554323999999999986443  46655   556754  8999999998654

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=93.48  E-value=0.084  Score=50.76  Aligned_cols=33  Identities=24%  Similarity=0.320  Sum_probs=29.9

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324            8 KAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP   41 (426)
Q Consensus         8 ~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   41 (426)
                      +|.|||.|-.|+.+|..++. |++|+++|+....
T Consensus         2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~k   34 (388)
T PRK15057          2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPSR   34 (388)
T ss_pred             EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHHH
Confidence            69999999999999988885 9999999998764

>PRK07233 hypothetical protein; Provisional

Probab=93.43  E-value=3.7  Score=40.08  Aligned_cols=55  Identities=18%  Similarity=-0.023  Sum_probs=37.5

Q ss_pred             HHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCch
Q 014324          110 ADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLS  171 (426)
Q Consensus       110 ~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S  171 (426)
                      ..+.+.|.+.++ .|+ |+++++|.+++.+++  .+++.   ..+++.  +++|.||.|.....
T Consensus       198 ~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~~--~~~~~---~~~~~~--~~ad~vI~a~p~~~  254 (434)
T PRK07233        198 ATLIDALAEAIEARGGEIRLGTPVTSVVIDGG--GVTGV---EVDGEE--EDFDAVISTAPPPI  254 (434)
T ss_pred             HHHHHHHHHHHHhcCceEEeCCCeeEEEEcCC--ceEEE---EeCCce--EECCEEEECCCHHH
Confidence            345566666665 366 999999999986443  34332   234544  88999999998753

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=93.41  E-value=0.051  Score=43.05  Aligned_cols=35  Identities=34%  Similarity=0.397  Sum_probs=28.4

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAG   39 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~   39 (426)
                      .+.+|.|||+|-+|.++|..|.+.|+.|.-+..++
T Consensus         9 ~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs   43 (127)
T PF10727_consen    9 ARLKIGIIGAGRVGTALARALARAGHEVVGVYSRS   43 (127)
T ss_dssp             ---EEEEECTSCCCCHHHHHHHHTTSEEEEESSCH
T ss_pred             CccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence            46799999999999999999999999987665443

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]

Probab=93.38  E-value=0.61  Score=44.32  Aligned_cols=37  Identities=24%  Similarity=0.274  Sum_probs=31.8

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP   41 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   41 (426)
                      ++.+|+|+|+|=+|.++...|-..-++|+|+..+...
T Consensus        54 kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyF   90 (491)
T KOG2495|consen   54 KKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYF   90 (491)
T ss_pred             CCceEEEEcCchHHHHHHHhccccccceEEeccccce
Confidence            4578999999999999988888888999999887763

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=93.30  E-value=0.14  Score=47.63  Aligned_cols=36  Identities=25%  Similarity=0.565  Sum_probs=31.9

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCC--cEEEEcccCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGW--DVVVLEKAGG   40 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~--~v~v~E~~~~   40 (426)
                      .+.+|+|||+|-+|.++|+.|...|+  +++++|....
T Consensus         2 ~~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~   39 (312)
T cd05293           2 PRNKVTVVGVGQVGMACAISILAKGLADELVLVDVVED   39 (312)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence            45799999999999999999999886  6999998775

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=93.28  E-value=0.11  Score=45.80  Aligned_cols=33  Identities=21%  Similarity=0.267  Sum_probs=29.6

Q ss_pred             cEEEEc-CChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            8 KAVIVG-GSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         8 ~V~IvG-aG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      +|.||| +|..|.++|..|++.|++|.++++.++
T Consensus         2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~   35 (219)
T TIGR01915         2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLE   35 (219)
T ss_pred             EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHH
Confidence            699997 799999999999999999999977654

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.28  E-value=0.11  Score=51.79  Aligned_cols=34  Identities=21%  Similarity=0.296  Sum_probs=30.8

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAG   39 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~   39 (426)
                      ..+|+|+|.|++|++++..|.++|.+|++.|+.+
T Consensus        12 ~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~   45 (488)
T PRK03369         12 GAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDP   45 (488)
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            3579999999999999999999999999999653

>PRK08264 short chain dehydrogenase; Validated

Probab=93.22  E-value=0.15  Score=45.30  Aligned_cols=40  Identities=18%  Similarity=0.176  Sum_probs=34.9

Q ss_pred             CCCCCCccEEEEcC-ChHHHHHHHHHHHcCC-cEEEEcccCC
Q 014324            1 MEKKEKGKAVIVGG-SIAGISCAHALLRAGW-DVVVLEKAGG   40 (426)
Q Consensus         1 m~~~~~~~V~IvGa-G~aGl~~A~~L~~~G~-~v~v~E~~~~   40 (426)
                      ||.+....|+|.|| |-.|..+|..|.++|. +|+++.|...
T Consensus         1 ~~~~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~   42 (238)
T PRK08264          1 MMDIKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPE   42 (238)
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChh
Confidence            67767778999996 8999999999999999 9999988754

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=93.18  E-value=0.17  Score=43.85  Aligned_cols=34  Identities=24%  Similarity=0.293  Sum_probs=30.9

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEccc
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKA   38 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~   38 (426)
                      ....|+|+|.|-.|..+|..|.+.|.+|+++|++
T Consensus        27 ~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~   60 (200)
T cd01075          27 EGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADIN   60 (200)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            4468999999999999999999999999998865

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=93.09  E-value=0.14  Score=47.27  Aligned_cols=36  Identities=19%  Similarity=0.288  Sum_probs=32.7

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ...+|+|+|.|.+|..+|..|++.|.+|+++++++.
T Consensus       151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~  186 (296)
T PRK08306        151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSA  186 (296)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            356899999999999999999999999999998854

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=93.09  E-value=0.14  Score=46.14  Aligned_cols=40  Identities=25%  Similarity=0.275  Sum_probs=34.1

Q ss_pred             CCCCCCccEEEEcC-ChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            1 MEKKEKGKAVIVGG-SIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         1 m~~~~~~~V~IvGa-G~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ||......|+|.|| |-.|..+|..|+++|++|+++++...
T Consensus         1 ~~~l~~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~   41 (257)
T PRK07067          1 MMRLQGKVALLTGAASGIGEAVAERYLAEGARVVIADIKPA   41 (257)
T ss_pred             CCCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHH
Confidence            67666678999997 78899999999999999999987654

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.08  E-value=0.13  Score=50.34  Aligned_cols=34  Identities=26%  Similarity=0.341  Sum_probs=31.3

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      .+|+|||-|.+|.++|..|.++|++|+++|++..
T Consensus         4 ~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~   37 (418)
T PRK00683          4 QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLE   37 (418)
T ss_pred             CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            5799999999999999999999999999997654

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=93.06  E-value=0.1  Score=51.88  Aligned_cols=35  Identities=17%  Similarity=0.302  Sum_probs=32.4

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP   41 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   41 (426)
                      .+|.|||+|..|...|..|+++|++|+++|+.+..
T Consensus         6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~   40 (503)
T TIGR02279         6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEA   40 (503)
T ss_pred             cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHH
Confidence            46999999999999999999999999999998763

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=93.05  E-value=0.15  Score=48.11  Aligned_cols=36  Identities=28%  Similarity=0.426  Sum_probs=32.7

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCC-cEEEEcccCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGW-DVVVLEKAGG   40 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~   40 (426)
                      ...+|+|||+|-.|..+|..|++.|+ +++|+|...-
T Consensus        23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~v   59 (338)
T PRK12475         23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYV   59 (338)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence            45689999999999999999999998 8999999874

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=93.03  E-value=0.17  Score=43.94  Aligned_cols=36  Identities=22%  Similarity=0.294  Sum_probs=32.6

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCC-cEEEEcccCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGW-DVVVLEKAGG   40 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~   40 (426)
                      .+.+|+|||+|-.|..+|..|++.|+ +++++|...-
T Consensus        20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~v   56 (202)
T TIGR02356        20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHV   56 (202)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEE
Confidence            46789999999999999999999998 7999998764

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=92.99  E-value=3.3  Score=40.08  Aligned_cols=28  Identities=43%  Similarity=0.577  Sum_probs=26.5

Q ss_pred             hHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 014324           16 IAGISCAHALLRAGWDVVVLEKAGGPPT   43 (426)
Q Consensus        16 ~aGl~~A~~L~~~G~~v~v~E~~~~~~~   43 (426)
                      +|||+||+.|+++|++|+|||++..++.
T Consensus         1 iaGL~aA~~L~~~G~~v~vlEa~~r~GG   28 (450)
T PF01593_consen    1 IAGLAAAYYLAKAGYDVTVLEASDRVGG   28 (450)
T ss_dssp             HHHHHHHHHHHHTTTEEEEEESSSSSBT
T ss_pred             ChHHHHHHHHHhCCCCEEEEEcCCCCCc
Confidence            5899999999999999999999999875

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=92.97  E-value=0.13  Score=50.79  Aligned_cols=35  Identities=20%  Similarity=0.309  Sum_probs=32.0

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ..+|+|+|+|++|+.++..+...|.+|+++|++..
T Consensus       164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~  198 (511)
T TIGR00561       164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPE  198 (511)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            46899999999999999999999999999998764

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.95  E-value=0.14  Score=50.70  Aligned_cols=34  Identities=24%  Similarity=0.371  Sum_probs=31.6

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      .+|+|+|.|.+|+++|..|.+.|++|++.|+.+.
T Consensus        15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~   48 (458)
T PRK01710         15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSE   48 (458)
T ss_pred             CeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCC
Confidence            4799999999999999999999999999998764

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=92.94  E-value=0.12  Score=50.86  Aligned_cols=35  Identities=17%  Similarity=0.139  Sum_probs=30.6

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcC--CcEEEEcccCCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAG--WDVVVLEKAGGP   41 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G--~~v~v~E~~~~~   41 (426)
                      ++|+|||+|-.|+.+|..|+++|  ++|+.+|..+..
T Consensus         2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~   38 (473)
T PLN02353          2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPR   38 (473)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHH
Confidence            36999999999999999999984  789999987653

>PRK07774 short chain dehydrogenase; Provisional

Probab=92.91  E-value=0.17  Score=45.28  Aligned_cols=39  Identities=31%  Similarity=0.389  Sum_probs=34.3

Q ss_pred             CCCCCCccEEEEcC-ChHHHHHHHHHHHcCCcEEEEcccC
Q 014324            1 MEKKEKGKAVIVGG-SIAGISCAHALLRAGWDVVVLEKAG   39 (426)
Q Consensus         1 m~~~~~~~V~IvGa-G~aGl~~A~~L~~~G~~v~v~E~~~   39 (426)
                      |+.++...|+|.|| |-.|..+|..|.++|.+|++++|..
T Consensus         1 ~~~~~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~   40 (250)
T PRK07774          1 MGRFDDKVAIVTGAAGGIGQAYAEALAREGASVVVADINA   40 (250)
T ss_pred             CcccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            66666678999998 8999999999999999999998764

>TIGR00936 ahcY adenosylhomocysteinase

Probab=92.90  E-value=0.13  Score=49.32  Aligned_cols=35  Identities=23%  Similarity=0.119  Sum_probs=32.2

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ...|+|+|.|+.|..+|..|+..|.+|+++|..+.
T Consensus       195 Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~  229 (406)
T TIGR00936       195 GKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPI  229 (406)
T ss_pred             cCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChh
Confidence            45899999999999999999999999999998774

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.87  E-value=0.14  Score=50.68  Aligned_cols=35  Identities=11%  Similarity=-0.061  Sum_probs=31.9

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ..+|+|+|.|-+|.++|..|.++|.+|++.|.++.
T Consensus         8 ~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~   42 (468)
T PRK04690          8 GRRVALWGWGREGRAAYRALRAHLPAQALTLFCNA   42 (468)
T ss_pred             CCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCc
Confidence            45799999999999999999999999999997654

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=92.87  E-value=0.15  Score=47.52  Aligned_cols=34  Identities=29%  Similarity=0.472  Sum_probs=30.7

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCC--cEEEEcccCCC
Q 014324            8 KAVIVGGSIAGISCAHALLRAGW--DVVVLEKAGGP   41 (426)
Q Consensus         8 ~V~IvGaG~aGl~~A~~L~~~G~--~v~v~E~~~~~   41 (426)
                      +|+|||+|-+|.++|..|+..|.  +++++|+....
T Consensus         2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~   37 (306)
T cd05291           2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEK   37 (306)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcch
Confidence            69999999999999999999994  79999997763

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=92.80  E-value=0.13  Score=48.80  Aligned_cols=33  Identities=21%  Similarity=0.288  Sum_probs=27.6

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCC-cEEEEcccCC
Q 014324            8 KAVIVGGSIAGISCAHALLRAGW-DVVVLEKAGG   40 (426)
Q Consensus         8 ~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~   40 (426)
                      .|+|+|+||.||.++..++..|. +|+++|+.+.
T Consensus       171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~  204 (350)
T COG1063         171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPE  204 (350)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHH
Confidence            69999999999999888888896 5666676655

>PTZ00117 malate dehydrogenase; Provisional

Probab=92.76  E-value=0.18  Score=47.17  Aligned_cols=37  Identities=24%  Similarity=0.377  Sum_probs=32.7

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcC-CcEEEEcccCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAG-WDVVVLEKAGGP   41 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G-~~v~v~E~~~~~   41 (426)
                      .+.+|+|||||-.|.++|..|+..| .+++++|.....
T Consensus         4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~   41 (319)
T PTZ00117          4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGV   41 (319)
T ss_pred             CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCcc
Confidence            4579999999999999999999999 589999987653

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=92.70  E-value=0.16  Score=50.37  Aligned_cols=35  Identities=26%  Similarity=0.250  Sum_probs=31.5

Q ss_pred             CccEEEEcCChHHHH-HHHHHHHcCCcEEEEcccCC
Q 014324            6 KGKAVIVGGSIAGIS-CAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~-~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ..+|+|||.|-+|++ +|..|.++|++|.+.|.+..
T Consensus         7 ~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~   42 (461)
T PRK00421          7 IKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKES   42 (461)
T ss_pred             CCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCC
Confidence            357999999999999 69999999999999998654

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=92.54  E-value=0.67  Score=47.22  Aligned_cols=35  Identities=20%  Similarity=0.381  Sum_probs=28.1

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcC-CcEEEEcccCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAG-WDVVVLEKAGG   40 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G-~~v~v~E~~~~   40 (426)
                      ..+|+|||+|..|+-+|..+.+.| .+|+|+.+.+.
T Consensus       267 gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~~  302 (564)
T PRK12771        267 GKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRTR  302 (564)
T ss_pred             CCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecCc
Confidence            357999999999999888888888 56777777654

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=92.44  E-value=0.15  Score=50.44  Aligned_cols=33  Identities=30%  Similarity=0.404  Sum_probs=31.0

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            8 KAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         8 ~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      +|+|+|+|..|..+|..|.+.|++|+++|+++.
T Consensus         2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~   34 (453)
T PRK09496          2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDEE   34 (453)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEECCHH
Confidence            699999999999999999999999999998665

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=92.36  E-value=0.16  Score=47.07  Aligned_cols=32  Identities=31%  Similarity=0.426  Sum_probs=29.3

Q ss_pred             EEEEcCChHHHHHHHHHHHcCC-cEEEEcccCC
Q 014324            9 AVIVGGSIAGISCAHALLRAGW-DVVVLEKAGG   40 (426)
Q Consensus         9 V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~   40 (426)
                      |.|||+|-.|..+|..|+.+|+ +|+++|..+.
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~   33 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEG   33 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCc
Confidence            6899999999999999999887 9999999864

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=92.36  E-value=0.15  Score=47.01  Aligned_cols=33  Identities=24%  Similarity=0.307  Sum_probs=30.5

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            8 KAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         8 ~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      +|.|||.|..|..+|..|++.|++|+++++.+.
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~   33 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPE   33 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            489999999999999999999999999998764

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.35  E-value=0.19  Score=50.31  Aligned_cols=36  Identities=17%  Similarity=0.207  Sum_probs=32.1

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ...+|.|+|.|-+|+++|..|.++|++|.+.|....
T Consensus         6 ~~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~   41 (498)
T PRK02006          6 QGPMVLVLGLGESGLAMARWCARHGARLRVADTREA   41 (498)
T ss_pred             CCCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCC
Confidence            345799999999999999999999999999997653

>PLN02602 lactate dehydrogenase

Probab=92.32  E-value=0.24  Score=46.76  Aligned_cols=34  Identities=18%  Similarity=0.347  Sum_probs=30.9

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCC--cEEEEcccCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGW--DVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~--~v~v~E~~~~   40 (426)
                      .+|+|||+|-.|.++|+.|...|+  +++++|....
T Consensus        38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~   73 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPD   73 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCc
Confidence            699999999999999999998886  6999999765

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=92.24  E-value=0.23  Score=44.30  Aligned_cols=37  Identities=22%  Similarity=0.279  Sum_probs=32.2

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCC-cEEEEcccCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGW-DVVVLEKAGGP   41 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~~   41 (426)
                      ...+|+|||+|-.|..+|..|++.|+ +++++|...-.
T Consensus        23 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve   60 (240)
T TIGR02355        23 KASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVS   60 (240)
T ss_pred             hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCccc
Confidence            35789999999999999999999997 68888877653

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=92.23  E-value=0.22  Score=46.95  Aligned_cols=36  Identities=25%  Similarity=0.432  Sum_probs=32.5

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCC-cEEEEcccCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGW-DVVVLEKAGG   40 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~   40 (426)
                      .+.+|+|||+|-.|..+|..|++.|+ +++|+|...-
T Consensus        23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~V   59 (339)
T PRK07688         23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYV   59 (339)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCcc
Confidence            45789999999999999999999999 8999999653

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=92.19  E-value=0.23  Score=44.49  Aligned_cols=36  Identities=17%  Similarity=0.235  Sum_probs=32.1

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCC-cEEEEcccCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGW-DVVVLEKAGG   40 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~   40 (426)
                      .+.+|+|||+|..|..+|..|++.|+ +++|+|...-
T Consensus        31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~v   67 (245)
T PRK05690         31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTV   67 (245)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEE
Confidence            35789999999999999999999997 7999988764

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=92.12  E-value=0.23  Score=45.56  Aligned_cols=34  Identities=29%  Similarity=0.419  Sum_probs=30.5

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCC-cEEEEcccC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGW-DVVVLEKAG   39 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~   39 (426)
                      ..+|+|+|+|-+|.++|..|++.|+ +|+|++|..
T Consensus       127 ~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~  161 (284)
T PRK12549        127 LERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP  161 (284)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence            3579999999999999999999998 799998864

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=92.11  E-value=0.36  Score=35.30  Aligned_cols=33  Identities=24%  Similarity=0.371  Sum_probs=29.5

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHc-CCcEEEEcc
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRA-GWDVVVLEK   37 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~-G~~v~v~E~   37 (426)
                      ...+|+|+|+|-+|..+|..|.+. +.++.++++
T Consensus        22 ~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r   55 (86)
T cd05191          22 KGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            356899999999999999999998 678999998

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=92.09  E-value=0.25  Score=41.65  Aligned_cols=33  Identities=24%  Similarity=0.211  Sum_probs=30.1

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCC-cEEEEcccCC
Q 014324            8 KAVIVGGSIAGISCAHALLRAGW-DVVVLEKAGG   40 (426)
Q Consensus         8 ~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~   40 (426)
                      +|+|||+|-.|...|..|++.|+ +++++|...-
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v   34 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVV   34 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEE
Confidence            58999999999999999999998 4999998764

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=92.06  E-value=0.24  Score=47.96  Aligned_cols=36  Identities=28%  Similarity=0.260  Sum_probs=32.6

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ....|+|+|.|..|..+|..|+..|.+|+++|+.+.
T Consensus       211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~  246 (425)
T PRK05476        211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPI  246 (425)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCch
Confidence            345799999999999999999999999999998765

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=92.04  E-value=0.26  Score=43.56  Aligned_cols=36  Identities=44%  Similarity=0.568  Sum_probs=31.9

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCc---EEEEcccCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWD---VVVLEKAGG   40 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~---v~v~E~~~~   40 (426)
                      ...+|+|+|+|-+|...|..|.+.|.+   +.|++|...
T Consensus        24 ~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl   62 (226)
T cd05311          24 EEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGV   62 (226)
T ss_pred             cCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCc
Confidence            456899999999999999999999985   999999854

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PLN02487 zeta-carotene desaturase

Probab=92.03  E-value=7.8  Score=39.43  Aligned_cols=37  Identities=19%  Similarity=0.101  Sum_probs=31.3

Q ss_pred             cccEEEeccccccCCCCCcchhhhhHHHHHHHHHHHHhhc
Q 014324          308 WSNVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWG  347 (426)
Q Consensus       308 ~~rv~LvGDAAh~~~P~~G~G~~~ai~Da~~La~~L~~~~  347 (426)
                      ..+++|+||--.+-.|   ..|+-|++++...|+.|.+..
T Consensus       517 ~~nl~LAGD~t~~~yP---at~EgAv~SG~~AA~~i~~~~  553 (569)
T PLN02487        517 ISNFFLAGSYTKQDYI---DSMEGATLSGRQAAAYICEAG  553 (569)
T ss_pred             CCCEEEeCcccccCCc---chHHHHHHHHHHHHHHHHHHh
Confidence            4899999999888777   499999999999999887653

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=91.99  E-value=3.6  Score=38.14  Aligned_cols=35  Identities=17%  Similarity=0.244  Sum_probs=32.3

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP   41 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   41 (426)
                      .+|+|||||.+..-.|+.|++.+-+|+++=|+...
T Consensus       144 k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~  178 (305)
T COG0492         144 KDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEF  178 (305)
T ss_pred             CeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCccc
Confidence            49999999999999999999999999999888775

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=91.97  E-value=0.29  Score=39.80  Aligned_cols=34  Identities=21%  Similarity=0.264  Sum_probs=30.7

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCC-cEEEEcccCCC
Q 014324            8 KAVIVGGSIAGISCAHALLRAGW-DVVVLEKAGGP   41 (426)
Q Consensus         8 ~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~~   41 (426)
                      +|+|||+|-.|...|..|++.|+ +++++|...-.
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~   35 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVE   35 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcC
Confidence            58999999999999999999998 69999988753

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=91.96  E-value=0.28  Score=42.88  Aligned_cols=36  Identities=28%  Similarity=0.253  Sum_probs=32.2

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCc-EEEEcccCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWD-VVVLEKAGG   40 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~-v~v~E~~~~   40 (426)
                      ...+|+|||+|-.|...|..|++.|+. ++++|...-
T Consensus        27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~v   63 (212)
T PRK08644         27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVV   63 (212)
T ss_pred             hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEe
Confidence            457899999999999999999999985 999998764

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=91.90  E-value=0.24  Score=45.51  Aligned_cols=35  Identities=17%  Similarity=0.266  Sum_probs=31.9

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ..+|+|+|.|-.|.++|..|+..|.+|++++|...
T Consensus       151 gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~  185 (287)
T TIGR02853       151 GSNVMVLGFGRTGMTIARTFSALGARVFVGARSSA  185 (287)
T ss_pred             CCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            46899999999999999999999999999998754

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=91.85  E-value=0.19  Score=52.47  Aligned_cols=34  Identities=21%  Similarity=0.233  Sum_probs=32.0

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      .+|+|||||..|...|..++++|++|+++|.+..
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~  347 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQK  347 (715)
T ss_pred             ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHH
Confidence            4699999999999999999999999999998876

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=91.84  E-value=0.16  Score=51.58  Aligned_cols=34  Identities=32%  Similarity=0.411  Sum_probs=31.9

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      -.|+|+|+|..|-.+|..|.++|++|+++|++++
T Consensus       418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~  451 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRT  451 (558)
T ss_pred             CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHH
Confidence            4689999999999999999999999999999876

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=91.83  E-value=0.23  Score=46.03  Aligned_cols=34  Identities=29%  Similarity=0.467  Sum_probs=31.0

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ++|.|||.|..|..+|..|++.|++|.++++.+.
T Consensus         3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~   36 (296)
T PRK11559          3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPE   36 (296)
T ss_pred             ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            3799999999999999999999999999988754

>PRK13984 putative oxidoreductase; Provisional

Probab=91.79  E-value=1  Score=46.27  Aligned_cols=30  Identities=23%  Similarity=0.354  Sum_probs=25.0

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCC------cEEEEc
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGW------DVVVLE   36 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~------~v~v~E   36 (426)
                      .+|+|||||..|+-+|..|++.|.      +|+|+.
T Consensus       419 k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~  454 (604)
T PRK13984        419 RSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTS  454 (604)
T ss_pred             CcEEEECCchHHHHHHHHHHhccccccCceEEEEec
Confidence            589999999999999999998753      566653

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=91.78  E-value=0.2  Score=52.26  Aligned_cols=35  Identities=20%  Similarity=0.219  Sum_probs=32.4

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP   41 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   41 (426)
                      .+|.|||||..|...|..++++|++|+++|.+...
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~  348 (714)
T TIGR02437       314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHS  348 (714)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHH
Confidence            46999999999999999999999999999998763

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=91.77  E-value=0.33  Score=41.80  Aligned_cols=34  Identities=32%  Similarity=0.465  Sum_probs=30.1

Q ss_pred             CCccEEEEcC-ChHHHHHHHHHHHcCCcEEEEccc
Q 014324            5 EKGKAVIVGG-SIAGISCAHALLRAGWDVVVLEKA   38 (426)
Q Consensus         5 ~~~~V~IvGa-G~aGl~~A~~L~~~G~~v~v~E~~   38 (426)
                      ...+|+|+|| |..|..+|..|++.|.+|+++.|.
T Consensus        27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~   61 (194)
T cd01078          27 KGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD   61 (194)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            3468999997 999999999999999999999765

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=91.76  E-value=0.24  Score=47.03  Aligned_cols=34  Identities=24%  Similarity=0.403  Sum_probs=31.5

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcC-CcEEEEcccCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAG-WDVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G-~~v~v~E~~~~   40 (426)
                      .+|+|||+|-.|.+.|..|+++| .+|+|-+|...
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~   36 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKE   36 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHH
Confidence            37999999999999999999999 89999999954

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.68  E-value=0.24  Score=49.22  Aligned_cols=34  Identities=29%  Similarity=0.521  Sum_probs=30.9

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAG   39 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~   39 (426)
                      ..+|+|+|.|-+|+++|..|.+.|.+|++.|+..
T Consensus        15 ~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~   48 (473)
T PRK00141         15 SGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNE   48 (473)
T ss_pred             CCeEEEEccCHHHHHHHHHHHHCCCEEEEECCCh
Confidence            3579999999999999999999999999999754

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=91.62  E-value=0.27  Score=45.61  Aligned_cols=33  Identities=24%  Similarity=0.485  Sum_probs=29.7

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCC--cEEEEcccCC
Q 014324            8 KAVIVGGSIAGISCAHALLRAGW--DVVVLEKAGG   40 (426)
Q Consensus         8 ~V~IvGaG~aGl~~A~~L~~~G~--~v~v~E~~~~   40 (426)
                      +|.|||+|-.|.++|+.|..+|+  +++++|....
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~   35 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEG   35 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence            58999999999999999999886  6999998665

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PLN02256 arogenate dehydrogenase

Probab=91.59  E-value=0.29  Score=45.36  Aligned_cols=36  Identities=25%  Similarity=0.249  Sum_probs=31.8

Q ss_pred             CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccC
Q 014324            4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAG   39 (426)
Q Consensus         4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~   39 (426)
                      +...+|.|||.|-.|-+.|..|.+.|.+|.++++..
T Consensus        34 ~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~   69 (304)
T PLN02256         34 SRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSD   69 (304)
T ss_pred             CCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECcc
Confidence            345689999999999999999999999999998764

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=91.59  E-value=0.28  Score=45.80  Aligned_cols=36  Identities=11%  Similarity=0.147  Sum_probs=31.8

Q ss_pred             CCccEEEEcC-ChHHHHHHHHHHHcCC-------cEEEEcccCC
Q 014324            5 EKGKAVIVGG-SIAGISCAHALLRAGW-------DVVVLEKAGG   40 (426)
Q Consensus         5 ~~~~V~IvGa-G~aGl~~A~~L~~~G~-------~v~v~E~~~~   40 (426)
                      +.++|.|||+ |..|.++|+.|...|+       +++++|....
T Consensus         2 ~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~   45 (323)
T TIGR01759         2 KPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPA   45 (323)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCc
Confidence            5689999998 9999999999998886       7999998753

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=91.58  E-value=0.3  Score=43.28  Aligned_cols=36  Identities=19%  Similarity=0.272  Sum_probs=32.1

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCC-cEEEEcccCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGW-DVVVLEKAGG   40 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~   40 (426)
                      .+.+|+|||+|-.|...|..|++.|+ +++|+|...-
T Consensus        20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~v   56 (228)
T cd00757          20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVV   56 (228)
T ss_pred             hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEE
Confidence            45789999999999999999999998 7888887764

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=91.57  E-value=0.22  Score=46.21  Aligned_cols=33  Identities=18%  Similarity=0.261  Sum_probs=30.7

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            8 KAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         8 ~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      +|.|||.|-.|..+|..|.++|++|.++++.+.
T Consensus         2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~   34 (298)
T TIGR00872         2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQD   34 (298)
T ss_pred             EEEEEcchHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            699999999999999999999999999988764

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	426
2vou_A	397	Structure Of 2,6-dihydroxypyridine-3-hydroxylase Fr		4e-11
3rp8_A	407	Crystal Structure Of Klebsiella Pneumoniae R204q Hp		7e-09
3rp6_A	407	Crystal Structure Of Klebsiella Pneumoniae Hpxo Com		2e-08
3c96_A	410	Crystal Structure Of The Flavin-Containing Monooxyg		2e-08
2rgj_A	402	Crystal Structure Of Flavin-Containing Monooxygenas		3e-07

>pdb|2VOU|A Chain A, Structure Of 2,6-dihydroxypyridine-3-hydroxylase From Arthrobacter Nicotinovorans Length = 397

Iteration: 1
 Score = 65.9 bits (159), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 81/375 (21%), Positives = 146/375 (38%), Gaps = 49/375 (13%)
Query: 8   KAVIVGGSIAGISCAHALLRAGWDVVVLEKXXXXXXXXXXXXXXXXDRPAQRIIQSWLNG 67
           +  +VGGSI+G++ A  L  AG DV V E+                +     ++   L  
Sbjct: 7   RIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPE-----LVHYLLEQ 61
Query: 68  RPHLLHLATVPLTIDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEIFLR 127
              L  ++    +++   A    +V    A     ++R   +  ++G LY    PE +  
Sbjct: 62  GVELDSISVPSSSMEYVDALTGERVGSVPA-----DWRFTSYDSIYGGLYELFGPERY-- 114
Query: 128 GHQYLSFCISEXXXXXXXXXXXLQTDEVIEIKGNLLVAADGCLSSIRQSFLSDFKLRYSG 187
              + S C+             ++  +  + + N ++ ADG  S +R+  L   +  Y+G
Sbjct: 115 ---HTSKCL--VGLSQDSETVQMRFSDGTKAEANWVIGADGGASVVRKRLLG-IEPTYAG 168
Query: 188 YCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELLNK------RLN 241
           Y  WRGVL    + D         V+        + L    H + Y +  +      RLN
Sbjct: 169 YVTWRGVLQPGEVADD--------VWNYFNDKFTYGLLDDGHLIAYPIPGRENAESPRLN 220
Query: 242 WVWYINQPE--------PIMKGNSVTMRVSNDM-----IKNMHEEAEKVWLPEFVKVIKE 288
           + WY N  E          ++G  +   V N+      ++  H + E ++ P F  ++  
Sbjct: 221 FQWYWNVAEGPDLDELMTDVRGIRLPTSVHNNSLNPHNLRQFHSKGESLFKP-FRDLVLN 279
Query: 289 TKEPFINAMYDCDPLKQIFWSNVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGV 348
              PF+  + D   + ++    V+LIGDAA    PH       +  DA  L +   K   
Sbjct: 280 ASSPFVTVVADAT-VDRMVHGRVLLIGDAAVTPRPHAAAGGAKASDDARTLAEVFTK--N 336
Query: 349 EGLLSALEEYQTVRL 363
             L  +L+ ++T +L
Sbjct: 337 HDLRGSLQSWETRQL 351

>pdb|3RP8|A Chain A, Crystal Structure Of Klebsiella Pneumoniae R204q Hpxo Complexed With Fad Length = 407

Iteration: 1
 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 87/398 (21%), Positives = 143/398 (35%), Gaps = 73/398 (18%)
Query: 8   KAVIVGGSIAGISCAHALLRAGWDVVVLEKXXXXXXXXXXXXXXXXDRPAQRIIQSWLNG 67
           KA+++G  I G+S A AL ++G D  V E                  +P    I  W NG
Sbjct: 25  KAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEI-------------KPVGAAISVWPNG 71
Query: 68  RPHLLHLATVPLTIDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEIFLR 127
              + HL    +       T    + R   RD    FR+        +   +L P I   
Sbjct: 72  VKCMAHLGMGDI-----METFGGPLRRMAYRD----FRSGE-----NMTQFSLAPLIERT 117
Query: 128 G------------HQYLSFCISEXXXXXXXXXXXLQTDEVIEI--------KGNLLVAAD 167
           G             + L +   +            +  + + +         G+LL+AAD
Sbjct: 118 GSRPCPVSRAELQREMLDYWGRDSVQFGKRVTRCEEDADGVTVWFTDGSSASGDLLIAAD 177
Query: 168 GCLSSIRQSFLS-DFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLAS 226
           G  S++R   L    + RY+GY  W G+     +E  E +    +    +G+     L  
Sbjct: 178 GSHSALRPWVLGFTPQRRYAGYVNWNGL-----VEIDEALAPGDQWTTFVGEGKQVSLMP 232
Query: 227 GTHSVFYELLNKRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVI 286
            +   FY          ++ + P P        +    D ++         W P   K+I
Sbjct: 233 VSAGRFY----------FFFDVPLP------AGLAEDRDTLRADLSRYFAGWAPPVQKLI 276
Query: 287 KETKEPFIN--AMYDCDPLKQIFWSNVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLE 344
                   N   ++D +P  ++    V L+GDA H TTP   +    ++ DA+VLG    
Sbjct: 277 AALDPQTTNRIEIHDIEPFSRLVRGRVALLGDAGHSTTPDIGQGGCAAMEDAVVLGAVFR 336
Query: 345 KWGVEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQG 382
           +     + +AL EY+  R       VL +R+   I  G
Sbjct: 337 Q--TRDIAAALREYEAQRCDRVRDLVLKARKRCDITHG 372

>pdb|3RP6|A Chain A, Crystal Structure Of Klebsiella Pneumoniae Hpxo Complexed With Fad Length = 407

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 86/389 (22%), Positives = 136/389 (34%), Gaps = 55/389 (14%)
Query: 8   KAVIVGGSIAGISCAHALLRAGWDVVVLEKXXXXXXXXXXXXXXXXDRPAQRIIQSWLNG 67
           KA+++G  I G+S A AL ++G D  V E                  +P    I  W NG
Sbjct: 25  KAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEI-------------KPVGAAISVWPNG 71
Query: 68  RPHLLHLATVPLTIDQNQATDNAKVTRTLARD-----DNFNFRAAHWADLHGLLYNALPP 122
                HL    +       T    + R   RD     +   F  A   +  G     +  
Sbjct: 72  VKCXAHLGXGDIX-----ETFGGPLRRXAYRDFRSGENXTQFSLAPLIERTGSRPCPVSR 126
Query: 123 EIFLR------GHQYLSFCISEXXXXXXXXXXXLQTDEVIEIKGNLLVAADGCLSSIRQS 176
               R      G   + F               +   +     G+LL+AADG  S++R  
Sbjct: 127 AELQREXLDYWGRDSVQFGKRVTRCEEDADGVTVWFTDGSSASGDLLIAADGSHSALRPW 186
Query: 177 FLS-DFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYEL 235
            L    + RY+GY  W G+     +E  E +    +    +G+     L   +   FY  
Sbjct: 187 VLGFTPQRRYAGYVNWNGL-----VEIDEALAPGDQWTTFVGEGKRVSLXPVSAGRFY-- 239
Query: 236 LNKRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFIN 295
                   ++ + P P        +    D ++         W P   K+I        N
Sbjct: 240 --------FFFDVPLP------AGLAEDRDTLRADLSRYFAGWAPPVQKLIAALDPQTTN 285
Query: 296 --AMYDCDPLKQIFWSNVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLS 353
              ++D +P  ++    V L+GDA H TTP   +    +  DA+VLG    +     + +
Sbjct: 286 RIEIHDIEPFSRLVRGRVALLGDAGHSTTPDIGQGGCAAXEDAVVLGAVFRQ--TRDIAA 343
Query: 354 ALEEYQTVRLPVTSKQVLHSRRLGRIKQG 382
           AL EY+  R       VL +R+   I  G
Sbjct: 344 ALREYEAQRCDRVRDLVLKARKRCDITHG 372

>pdb|3C96|A Chain A, Crystal Structure Of The Flavin-Containing Monooxygenase Phzs From Pseudomonas Aeruginosa. Northeast Structural Genomics Consortium Target Par240 Length = 410

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 67/251 (26%), Positives = 103/251 (41%), Gaps = 31/251 (12%)
Query: 158 IKGNLLVAADGCLSSIRQSFLSDFK-LRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDL 216
           +  ++LV ADG  S++R     D + L + G   WRGV +F    D    K M     + 
Sbjct: 156 LGADVLVGADGIHSAVRAHLHPDQRPLSHGGITMWRGVTEFDRFLDG---KTMIVANDEH 212
Query: 217 GKCLYFDLASGTHSVFYELLNKRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEK 276
              L     S  H+   + L   +NWV         M  ++   ++ N+   N     E 
Sbjct: 213 WSRLVAYPISARHAAEGKSL---VNWV--------CMVPSAAVGQLDNEADWNRDGRLED 261
Query: 277 VWLPEFVK----------VIKETKEPFINAMYDCDPLKQIFWSNVVLIGDAAHPTTPHGL 326
           V LP F            ++   +      M D DPL       + L+GDAAH   P G 
Sbjct: 262 V-LPFFADWDLGWFDIRDLLTRNQLILQYPMVDRDPLPHWGRGRITLLGDAAHLMYPMGA 320
Query: 327 RSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQGLALP 386
              + +ILD + L  +L +     + +AL EY+  R P  +K +L +R   R K+  A  
Sbjct: 321 NGASQAILDGIELAAALAR--NADVAAALREYEEARRPTANKIILANRE--REKEEWAAA 376
Query: 387 DREPFNTKTAS 397
            R P   K+A+
Sbjct: 377 SR-PKTEKSAA 386

>pdb|2RGJ|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase Phzs Length = 402

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 104/251 (41%), Gaps = 31/251 (12%)
Query: 158 IKGNLLVAADGCLSSIRQSFLSDFK-LRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDL 216
           +  ++LV ADG  S++R     D + L + G   WRGV +F    D +        +   
Sbjct: 156 LGADVLVGADGIHSAVRAHLHPDQRPLSHGGITXWRGVTEFDRFLDGKTXIVANDEH--W 213
Query: 217 GKCLYFDLASGTHSVFYELLNKRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEK 276
            + + + + S  H+   + L   +NWV  +         ++   ++ N+   N     E 
Sbjct: 214 SRLVAYPI-SARHAAEGKSL---VNWVCXVP--------SAAVGQLDNEADWNRDGRLED 261
Query: 277 VWLPEFVK----------VIKETKEPFINAMYDCDPLKQIFWSNVVLIGDAAHPTTPHGL 326
           V LP F            ++   +        D DPL       + L+GDAAH   P G 
Sbjct: 262 V-LPFFADWDLGWFDIRDLLTRNQLILQYPXVDRDPLPHWGRGRITLLGDAAHLXYPXGA 320
Query: 327 RSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQGLALP 386
              + +ILD + L  +L +     + +AL EY+  R P  +K +L +R   R K+  A  
Sbjct: 321 NGASQAILDGIELAAALAR--NADVAAALREYEEARRPTANKIILANRE--REKEEWAAA 376
Query: 387 DREPFNTKTAS 397
            R P   K+A+
Sbjct: 377 SR-PKTEKSAA 386

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	426
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	1e-76
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	3e-54
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	2e-51
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	3e-51
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	2e-50
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	2e-23
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	1e-14
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	1e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-08
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	2e-10
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	9e-09
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	9e-09
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	2e-08
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	3e-08
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	1e-07
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	1e-07
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	1e-07
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	6e-06
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	7e-07
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	1e-06
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	1e-06
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	2e-06
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	2e-06
3atr_A	453	Conserved archaeal protein; saturating double bond	2e-06
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	2e-06
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	2e-06
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	3e-06
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	3e-06
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	4e-06
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	4e-06
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	5e-06
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	6e-06
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	8e-06
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	8e-06
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	8e-06
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	9e-06
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	9e-06
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	1e-05
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	1e-05
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	1e-05
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	1e-05
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	2e-05
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	3e-05
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	4e-05
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	4e-05
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	6e-05
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	7e-05
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	9e-05
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	9e-05
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	1e-04
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	1e-04
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	1e-04
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	1e-04
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	1e-04
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	1e-04
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	2e-04
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	2e-04
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	2e-04
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	2e-04
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	3e-04
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	3e-04
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	3e-04
3utf_A	513	UDP-galactopyranose mutase; nucleotide binding, fl	4e-04
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	5e-04
1fcd_A	401	Flavocytochrome C sulfide dehydrogenase (flavin- b	5e-04
3dme_A	369	Conserved exported protein; structural genomics, P	5e-04
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	6e-04
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	7e-04
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	8e-04

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 Length = 397

 Score =  243 bits (621), Expect = 1e-76
 Identities = 85/393 (21%), Positives = 147/393 (37%), Gaps = 49/393 (12%)

Query: 8   KAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNG 67
           +  +VGGSI+G++ A  L  AG DV V E++  P   S  G G+ +       +     G
Sbjct: 7   RIAVVGGSISGLTAALMLRDAGVDVDVYERS--PQPLSGFGTGIVVQPELVHYLLEQ--G 62

Query: 68  RPHLLHLATVPLTIDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEIFLR 127
              L  ++    +++   A    +V    A     ++R   +  ++G LY    PE +  
Sbjct: 63  -VELDSISVPSSSMEYVDALTGERVGSVPA-----DWRFTSYDSIYGGLYELFGPERYHT 116

Query: 128 GHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSIRQSFLSDFKLRYSG 187
               +    S+   TV +           E   N ++ ADG  S +R+  L   +  Y+G
Sbjct: 117 SKCLVGL--SQDSETVQM---RFSDGTKAE--ANWVIGADGGASVVRKRLLGI-EPTYAG 168

Query: 188 YCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFY------ELLNKRLN 241
           Y  WRGVL    + D         V+        + L    H + Y         + RLN
Sbjct: 169 YVTWRGVLQPGEVAD--------DVWNYFNDKFTYGLLDDGHLIAYPIPGRENAESPRLN 220

Query: 242 WVWYINQPEPIMKGNSVT-------------MRVSNDMIKNMHEEAEKVWLPEFVKVIKE 288
           + WY N  E       +T               ++   ++  H + E      F  ++  
Sbjct: 221 FQWYWNVAEGPDLDELMTDVRGIRLPTSVHNNSLNPHNLRQFHSKGES-LFKPFRDLVLN 279

Query: 289 TKEPFINAMYDCDPLKQIFWSNVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGV 348
              PF+  + D   + ++    V+LIGDAA    PH       +  DA  L +   K   
Sbjct: 280 ASSPFVTVVAD-ATVDRMVHGRVLLIGDAAVTPRPHAAAGGAKASDDARTLAEVFTKNH- 337

Query: 349 EGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQ 381
             L  +L+ ++T +L      +   +++    Q
Sbjct: 338 -DLRGSLQSWETRQLQQGHAYLNKVKKMASRLQ 369

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* Length = 407

 Score =  184 bits (469), Expect = 3e-54
 Identities = 76/402 (18%), Positives = 133/402 (33%), Gaps = 53/402 (13%)

Query: 1   MEKKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRI 60
           +  +   KA+++G  I G+S A AL ++G D  V E         P GA + +     + 
Sbjct: 18  LYFQGHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAV---KEIKPVGAAISVWPNGVKC 74

Query: 61  IQSWLNG-RPHLLHLATVPLTIDQNQATDNAKVTRT----LARDDNFNFRAAHWADLHGL 115
           +     G    +         +          +T+     L             A+L   
Sbjct: 75  MAHL--GMGDIMETFGGPLRRMAYRDFRSGENMTQFSLAPLIERTGSRPCPVSRAELQRE 132

Query: 116 LYNALPPEIFLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSIRQ 175
           + +    +    G +           TV                G+LL+AADG  S++R 
Sbjct: 133 MLDYWGRDSVQFGKRVTRCEEDADGVTVW-----FTDGSSAS--GDLLIAADGSHSALRP 185

Query: 176 SFL-SDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYE 234
             L    + RY+GY  W G+++                     +   F +  G       
Sbjct: 186 WVLGFTPQRRYAGYVNWNGLVEID------------EALAPGDQWTTF-VGEGKQVSLMP 232

Query: 235 LLNKRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKV---WLPEFVKVIKETKE 291
           +   R  + + +  P  + +                  +  +    W P   K+I     
Sbjct: 233 VSAGRFYFFFDVPLPAGLAEDRDTL-----------RADLSRYFAGWAPPVQKLIAALDP 281

Query: 292 PFIN--AMYDCDPLKQIFWS--NVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWG 347
              N   ++D +P  +       V L+GDA H TTP   +    ++ DA+VLG    +  
Sbjct: 282 QTTNRIEIHDIEPFSR--LVRGRVALLGDAGHSTTPDIGQGGCAAMEDAVVLGAVFRQ-- 337

Query: 348 VEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQGLALPDRE 389
              + +AL EY+  R       VL +R+   I  G  +   E
Sbjct: 338 TRDIAAALREYEAQRCDRVRDLVLKARKRCDITHGKDMQLTE 379

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* Length = 379

 Score =  176 bits (448), Expect = 2e-51
 Identities = 75/394 (19%), Positives = 135/394 (34%), Gaps = 58/394 (14%)

Query: 8   KAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNG 67
           +A + GG  AG++ A AL + GWDV + EK+         GAG+ L     R+++    G
Sbjct: 13  RAEVAGGGFAGLTAAIALKQNGWDVRLHEKS---SELRAFGAGIYLWHNGLRVLEGL--G 67

Query: 68  -RPHLLHLATVPLTIDQNQATDNAKVTRTLARDDNFN--FRAAHWADLHGLLYNALPPE- 123
               +L  +  P T       +     ++++++      +R    + LH  L N      
Sbjct: 68  ALDDVLQGSHTPPTY------ETWMHNKSVSKETFNGLPWRIMTRSHLHDALVNRARALG 121

Query: 124 IFLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSIRQSFLSDFKL 183
           + +     ++           +    LQT EV+E   +L+V ADG  S +R S       
Sbjct: 122 VDIS----VNSEAVAADPVGRL---TLQTGEVLE--ADLIVGADGVGSKVRDSIGFKQDR 172

Query: 184 RYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELL-NKRLNW 242
             S     R ++     E                    ++       + Y       L  
Sbjct: 173 WVSKDGLIRLIVPRMKKELGHG--------EWDNTIDMWNFWPRVQRILYSPCNENELYL 224

Query: 243 VWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDP 302
                  +P       ++ +  ++   M         P  ++  K   +      Y+   
Sbjct: 225 GLMAPAADP----RGSSVPIDLEVWVEMFPF----LEPCLIEAAKL--KTARYDKYETTK 274

Query: 303 LKQIFWS--NVVLIGDAAHPTTPH---GLRSTNMSILDAMVLGKSLEKWGVEGLLSALEE 357
           L    W+   V L+GDAAH   P    G      ++++A  L + LE+     +  AL  
Sbjct: 275 LDS--WTRGKVALVGDAAHAMCPALAQG---AGCAMVNAFSLSQDLEE--GSSVEDALVA 327

Query: 358 YQTVRLPVTSKQVLHSRRLGRIKQGLALPDREPF 391
           ++T   P+T +    S          +L     F
Sbjct: 328 WETRIRPITDRCQALSGDYAAN---RSLSKGNMF 358

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* Length = 398

 Score =  176 bits (448), Expect = 3e-51
 Identities = 64/372 (17%), Positives = 132/372 (35%), Gaps = 23/372 (6%)

Query: 8   KAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRP-AQRIIQSWLN 66
              I+GG   G++ A  L + G DV V E+          G  L L +   Q  ++    
Sbjct: 28  NVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDR-EARIFGGTLDLHKGSGQEAMKKA-- 84

Query: 67  GRPHLLHLATVPLTIDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEIFL 126
           G     +   +P+ ++      N   T+ +  ++ F+    +  DL  +L N+L  +  +
Sbjct: 85  GLLQTYYDLALPMGVNIADEKGNILSTKNVKPENRFDNPEINRNDLRAILLNSLENDTVI 144

Query: 127 RGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSIRQSFLSDFKLRYS 186
              + +     + K T+T        +       +L++ A+G +S +R+ F++D ++  +
Sbjct: 145 WDRKLVMLEPGKKKWTLT-------FENKPSETADLVILANGGMSKVRK-FVTDTEVEET 196

Query: 187 GYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELLNKRLNWVWYI 246
           G    +  +    I            +             G         N  L++    
Sbjct: 197 GTFNIQADIHQPEINCPGF-------FQLCNGNRLMASHQGNLLFANPNNNGALHFGISF 249

Query: 247 NQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDPLKQI 306
             P+       V  +  N ++  + +E    W   + ++I  T      A       K  
Sbjct: 250 KTPDEWKNQTQVDFQNRNSVVDFLLKEFSD-WDERYKELIHTTLSFVGLATRIFPLEKPW 308

Query: 307 FW---SNVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTVRL 363
                  + +IGDAAH   P   +  N  ++DA++L  +L       +  A++ Y+    
Sbjct: 309 KSKRPLPITMIGDAAHLMPPFAGQGVNSGLVDALILSDNLADGKFNSIEEAVKNYEQQMF 368

Query: 364 PVTSKQVLHSRR 375
               +    S +
Sbjct: 369 IYGKEAQEESTQ 380

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* Length = 410

 Score =  174 bits (444), Expect = 2e-50
 Identities = 85/407 (20%), Positives = 136/407 (33%), Gaps = 56/407 (13%)

Query: 8   KAVIVGGSIAGISCAHALLRAG-WDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLN 66
             +I G  I G+SCA AL +AG   V +LE +       P G G+ +   A   +     
Sbjct: 6   DILIAGAGIGGLSCALALHQAGIGKVTLLESS---SEIRPLGVGINIQPAAVEALAEL-- 60

Query: 67  G-RPHLLHLATVPLTIDQNQATDNAKVTRTLARDDNFN--FRAAHWADLHGLLYNA---- 119
           G  P L   A     +     +     +     +        + H  +L  +L  A    
Sbjct: 61  GLGPALAATAIPTHELRYIDQSGATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRER 120

Query: 120 LPPEIFLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSIRQSFLS 179
           L  +    G         E    V + A+         +  ++LV ADG  S++R     
Sbjct: 121 LGQQAVRTGLGVERI--EERDGRVLIGARDGHGKPQ-ALGADVLVGADGIHSAVRAHLHP 177

Query: 180 D-FKLRYSGYCAWRGVLDFSGIED--SEIIKGMRR-----VYPDLGKCLYFDLASGTHSV 231
           D   L + G   WRGV +F    D  + I+           YP               S 
Sbjct: 178 DQRPLSHGGITMWRGVTEFDRFLDGKTMIVANDEHWSRLVAYP--------------ISA 223

Query: 232 FYELLN-KRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKV------WLPEFVK 284
            +       +NWV  +         N               E+             +   
Sbjct: 224 RHAAEGKSLVNWVCMVPSAAVGQLDNEADWNRDGR-----LEDVLPFFADWDLGWFDIRD 278

Query: 285 VIKETKEPFINAMYDCDPLKQIFWS--NVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKS 342
           ++   +      M D DPL    W    + L+GDAAH   P G    + +ILD + L  +
Sbjct: 279 LLTRNQLILQYPMVDRDPLPH--WGRGRITLLGDAAHLMYPMGANGASQAILDGIELAAA 336

Query: 343 LEKWGVEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQGLALPDRE 389
           L +     + +AL EY+  R P  +K +L +R   + +   A   + 
Sbjct: 337 LAR--NADVAAALREYEEARRPTANKIILANREREKEEWAAASRPKT 381

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472} Length = 381

 Score = 99.8 bits (248), Expect = 2e-23
 Identities = 49/379 (12%), Positives = 104/379 (27%), Gaps = 65/379 (17%)

Query: 8   KAVIVGGSIAGISCAHALLRA--GWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWL 65
           K +++G   AG+  A  L +A   W + ++EK          G G+ L     +   + L
Sbjct: 2   KILVIGAGPAGLVFASQLKQARPLWAIDIVEKN---DEQEVLGWGVVLPGRPGQHPANPL 58

Query: 66  NGRPHLLHLATVPLTIDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEIF 125
           +       L    L     +                          L   L +       
Sbjct: 59  SYLDAPERLNPQFL-----EDFKLVHHNEPSLMSTGVLLCGVERRGLVHALRDKCR---- 109

Query: 126 LRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSIRQSFLSDFKLRY 185
                            +  ++ +L+  E+     +L+V A+G        F      + 
Sbjct: 110 ------------SQGIAIRFESPLLEHGELPLADYDLVVLANGVNHKTAH-FTEALVPQV 156

Query: 186 SGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVF----YELLNKRLN 241
                                 G  +++  +         +    +F    Y+  +    
Sbjct: 157 DYGRNKYIWY------------GTSQLFDQMN----LVFRTHGKDIFIAHAYKYSDTMST 200

Query: 242 WVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCD 301
           ++   ++                     M EEA   ++ +  +                 
Sbjct: 201 FIVECSEETYARARLG-----------EMSEEASAEYVAKVFQAELGGHGLVSQPGLGWR 249

Query: 302 PLKQIF---WS--NVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALE 356
               +         +VL+GDA           T M+++ A +L K+L      G+ +AL+
Sbjct: 250 NFMTLSHDRCHDGKLVLLGDALQSGHFSIGHGTTMAVVVAQLLVKALCTED--GVPAALK 307

Query: 357 EYQTVRLPVTSKQVLHSRR 375
            ++   LP+      H+  
Sbjct: 308 RFEERALPLVQLFRGHADN 326

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ... Length = 394

 Score = 73.9 bits (182), Expect = 1e-14
 Identities = 71/418 (16%), Positives = 119/418 (28%), Gaps = 94/418 (22%)

Query: 10  VIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSW----- 64
            I+G   +G+     L +AG D V+LE+           AG  L++    +++       
Sbjct: 6   AIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAG-VLEQGMVDLLREAGVDRR 64

Query: 65  --LNGRPH---LLHLATVPLTIDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNA 119
              +G  H    +  A     ID  + +    VT                 ++   L  A
Sbjct: 65  MARDGLVHEGVEIAFAGQRRRIDLKRLSGGKTVTV------------YGQTEVTRDLMEA 112

Query: 120 L---PPEIFLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSIRQS 176
                     +  +     +   +  VT +       E + +  + +   DG     RQS
Sbjct: 113 REACGATTVYQAAEVRLHDLQGERPYVTFER----DGERLRLDCDYIAGCDGFHGISRQS 168

Query: 177 ----FLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVF 232
                L  F+  Y     W G+L  +     E+I                   S T    
Sbjct: 169 IPAERLKVFERVYP--FGWLGLLADTPPVSHELIYANHP-----RGFALCSQRSATR--- 218

Query: 233 YELLNKRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEP 292
                      +Y+  P                       E  + W  E  +   E K  
Sbjct: 219 ---------SQYYVQVP---------------------LSEKVEDWSDE--RFWTELKAR 246

Query: 293 FINAMYDCDPLKQIFWS----------------NVVLIGDAAHPTTPHGLRSTNMSILDA 336
             + + +                           + L GDAAH   P G +  N++  D 
Sbjct: 247 LPSEVAEKLVTGPSLEKSIAPLRSFVVEPMQHGRLFLAGDAAHIVPPTGAKGLNLAASDV 306

Query: 337 MVLGKSLEKWGVEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQGLALPDREPFNTK 394
             L + L K   EG    LE Y  + L    K    S  +  +      PD + F+ +
Sbjct: 307 STLYRLLLKAYREGRGELLERYSAICLRRIWKAERFSWWMTSVLH--RFPDTDAFSQR 362

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} Length = 591

 Score = 65.8 bits (160), Expect = 1e-11
 Identities = 55/422 (13%), Positives = 113/422 (26%), Gaps = 51/422 (12%)

Query: 10  VIVGGSIAGISCAHALLRAGWDVVVLEKAGGP---------PTGSPTGAGLGLDRPAQRI 60
            I+GG  AG      L + G DV + E++  P         P        LGL       
Sbjct: 27  AIIGGGPAGSVAGLTLHKLGHDVTIYERSAFPRYRVGESLLPGTMSILNRLGLQ------ 80

Query: 61  IQSWLNGRPHLLHL-ATVPLTIDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNA 119
               ++ + ++    AT     DQ   T +    +      +   +         LL  A
Sbjct: 81  --EKIDAQNYVKKPSATFLWGQDQAPWTFSFAAPKVAPWVFDHAVQVKREEFDKLLLDEA 138

Query: 120 LPPEIFLR-GHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSIRQSF- 177
               I +          +S+    V     V +  E + ++ + ++ A G    I +   
Sbjct: 139 RSRGITVHEETPVTDVDLSDPDRVVLT---VRRGGESVTVESDFVIDAGGSGGPISRKLG 195

Query: 178 LSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELLN 237
           +  +   Y  +  W         E           + D G      +    +SV   +  
Sbjct: 196 VRQYDEFYRNFAVWSYFKLKDPFEGDLKGTTYSITFED-GWVWMIPIKDDLYSVGLVVDR 254

Query: 238 KRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAM 297
            +          +                +    +  + +   E V  ++  +  +    
Sbjct: 255 SKSAE-VREQGADAFYS----------STLAKCAKAMDILGGAEQVDEVRIVQ-DWSYD- 301

Query: 298 YDCDPLKQIFWSNVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLS--AL 355
                 +        L GDAA  T P   +  +++   A+    ++++    G       
Sbjct: 302 -----TEVFSADRFFLCGDAACFTDPLFSQGVHLASQSAVSAAAAIDRITRHGDEKDAVH 356

Query: 356 EEYQTVRLPVTSKQVLHSRRLGRIKQGLALPDRE--PFNTKTASPQDCQELQQKTMPFFA 413
             Y         +      +        A        F  K    +   +   +   +F 
Sbjct: 357 AWYNRTY----REAYEQYHQFLASFYTFASFTEPDSEFWRKRRITESDDDRLTRKK-WFE 411

Query: 414 DL 415
            L
Sbjct: 412 SL 413

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 64.9 bits (157), Expect = 3e-11
 Identities = 52/400 (13%), Positives = 109/400 (27%), Gaps = 118/400 (29%)

Query: 55  RPAQRIIQSWLNGRPH---LLH---------LATVPLTIDQNQATDNAKVTRTLARDDNF 102
           +P  ++ Q+ L  RP    L+          +A                V  +       
Sbjct: 135 QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA--------------LDVCLSYKVQCKM 180

Query: 103 NFRAAHWADLHGLLYNALPPEIFLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNL 162
           +F+   W +L                                        + V+E+   L
Sbjct: 181 DFKI-FWLNL----------------------------------KNCNSPETVLEMLQKL 205

Query: 163 LVAADGCL-------SSIRQSFLSDFKLRYSGYCAWRG------VLDFSGIEDSEIIKGM 209
           L   D          S+I+   +   +         +       VL    +++++     
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLR-IHSIQAELRRLLKSKPYENCLLVLL--NVQNAKAWNAF 262

Query: 210 RRVYPDLG-KCL-------YFDLASGTH----------SVFYELLNKRL--NWVWYINQ- 248
                +L  K L         D  S                     K L   ++    Q 
Sbjct: 263 -----NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317

Query: 249 -PEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDPLKQIF 307
            P  ++  N   + +  + I++     +  W       +    E  +N +   +  +++F
Sbjct: 318 LPREVLTTNPRRLSIIAESIRDGLATWDN-WKHVNCDKLTTIIESSLNVLEPAE-YRKMF 375

Query: 308 WSNVVLIGDAAHPTT------PHGLRSTNMSILDAMVLGKSL-EKWGVEGLLSALEEYQT 360
               V    A  PT          ++S  M +++ +    SL EK   E  +S    Y  
Sbjct: 376 DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH-KYSLVEKQPKESTISIPSIYLE 434

Query: 361 VRLPVTSKQVLHSRRLGRIKQGLALPDREPFNTKTASPQD 400
           +++ + ++  LH   +        +P     +       D
Sbjct: 435 LKVKLENEYALHRSIVDHYN----IPKTFDSDDLIPPYLD 470

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 55.2 bits (132), Expect = 3e-08
 Identities = 40/321 (12%), Positives = 92/321 (28%), Gaps = 96/321 (29%)

Query: 52  GLDRP-AQRIIQSWLNGRP----------HLLHLATV-------PLTIDQNQATDNAKVT 93
            L     + ++  +L+ RP          +   L+ +         T D  +  +  K+T
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT 356

Query: 94  RTLARDDNFNFRAAHWADLHGLLYNALPPEIFLRGHQYLSFCI--SEVKTTVTVKAKVLQ 151
             +                     N L P  + R   +    +          +   +L 
Sbjct: 357 TIIESS-----------------LNVLEPAEY-R-KMFDRLSVFPPSAH----IPTILLS 393

Query: 152 -------TDEVIEIKGNL----LVAADGCLSSI---------RQSFLSDFKL------RY 185
                    +V+ +   L    LV      S+I         +    +++ L       Y
Sbjct: 394 LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY 453

Query: 186 S---GYCAWRGVLD-------------FSGIEDSEIIKGMRRVYPDLG----KCLYFDLA 225
           +    + +   +                  IE  E +   R V+ D      K  +   A
Sbjct: 454 NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTA 513

Query: 226 SGTHSVFYELLNKRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKV 285
                     L +   +  YI   +P  +      R+ N ++  + +  E +   ++  +
Sbjct: 514 WNASGSILNTLQQLKFYKPYICDNDPKYE------RLVNAILDFLPKIEENLICSKYTDL 567

Query: 286 IKETKEPFINAMYDCDPLKQI 306
           ++        A+++ +  KQ+
Sbjct: 568 LRIALMAEDEAIFE-EAHKQV 587

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} Length = 535

 Score = 61.6 bits (150), Expect = 2e-10
 Identities = 62/424 (14%), Positives = 118/424 (27%), Gaps = 96/424 (22%)

Query: 10  VIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSW-LNGR 68
           ++VG  + G+S A  L R G  V+V+E+  G           G +     +++   +   
Sbjct: 9   LVVGAGLGGLSTAMFLARQGVRVLVVERRPGLSPYPR---AAGQNPRTMELLRIGGVADE 65

Query: 69  PHLLHLATVPLTIDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEIFL-- 126
             ++    +          D         R +      +   D          P  +   
Sbjct: 66  --VVRADDIR-----GTQGDFVIRLAESVRGEIL-RTVSESFDDMVAATEPCTPAGWAML 117

Query: 127 ---------------------RGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVA 165
                                 G + LSF   +      V A++   D   +++   LV 
Sbjct: 118 SQDKLEPILLAQARKHGGAIRFGTRLLSFRQHDDDAGAGVTARLAGPDGEYDLRAGYLVG 177

Query: 166 ADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLA 225
           ADG  S +R+S      +   G+     ++      D            + G   ++ L 
Sbjct: 178 ADGNRSLVRES----LGIGRYGHGTLTHMVGVIFDADL-------SGIMEPGTTGWYYLH 226

Query: 226 SGTHSVFYELLNKRLNWVWYIN-QPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVK 284
                  +   ++      ++   P+                     E  E       V+
Sbjct: 227 HPEFKGTFGPTDRPDRHTLFVEYDPDEG-------------------ERPEDFTPQRCVE 267

Query: 285 VIKETKEPFINAMYDCDPLKQIFWSNV---------------VLI-GDAAHPTTPHGLRS 328
           +I         A+   +   ++                    V + GDAA  T P G  S
Sbjct: 268 LIGL-------ALDAPEVKPELVDIQGWEMAARIAERWREGRVFLAGDAAKVTPPTGGMS 320

Query: 329 TNMSILDAMVLG-K---SLEKWGVEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQGLA 384
            N ++ D   L  K    L+     GLL     Y+  R       V  +  +   +    
Sbjct: 321 GNAAVADGFDLAWKLAAVLQGQAGAGLLDT---YEDERKVAAELVVAEALAIYAQRMAPH 377

Query: 385 LPDR 388
           + + 
Sbjct: 378 MAEV 381

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} Length = 421

 Score = 55.9 bits (135), Expect = 9e-09
 Identities = 50/378 (13%), Positives = 95/378 (25%), Gaps = 76/378 (20%)

Query: 10  VIVGGSIAGISCAHALLRAGWDVVVLEKAGGP---------PTGSPTGAGLGL-DRPAQR 59
           +++G   AG   A  + ++G+ V ++EK   P         P         G  D    +
Sbjct: 9   LVIGAGPAGTVAASLVNKSGFKVKIVEKQKFPRFVIGESLLPRCMEHLDEAGFLDAVKAQ 68

Query: 60  IIQSWLNGRPHLLHLATVPLTIDQNQATDNAK-VTRTLARD--DNFNFRAA--HWADLHG 114
             Q     +             + +    N    T  + R   D      A     D+  
Sbjct: 69  GFQQKFGAK---FVRGKEIADFNFSDQFSNGWNWTWQVPRGNFDKTLADEAARQGVDVE- 124

Query: 115 LLYNALPPEIFLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSIR 174
                                     +  T++          EI+   ++ A G    I 
Sbjct: 125 ------------YEVGVTDIKFFGTDSVTTIEDI---NGNKREIEARFIIDASGYGRVIP 169

Query: 175 QSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYE 234
           + F  D    +                   I    R V  ++       +          
Sbjct: 170 RMFGLDKPSGFESRRTLFT----------HIKDVKRPVAAEMEGNRITAVVHKPKV---- 215

Query: 235 LLNKRLNWVWYINQPEPIMKGN-SVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPF 293
                  W+W I    P   GN SV                E+      +       E F
Sbjct: 216 -------WIWVI----PFSNGNTSVGFVGEPSYFDEYTGTPEERMR-AMIANEGHIAERF 263

Query: 294 INAMYDCDP---------LKQIFWSNVVLIGDAAH---PTTPHGLRSTNMSILDAMVLGK 341
            +  +  +P           +++    VL G+A     P    G      ++      GK
Sbjct: 264 KSEEFLFEPRTIEGYAISASKLYGDGFVLTGNATEFLDPIFSSGA---TFAMESGSKGGK 320

Query: 342 SLEKWGVEGLLSALEEYQ 359
              ++     ++  +++ 
Sbjct: 321 LAVQFLKGEEVNWEKDFV 338

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} Length = 430

 Score = 56.1 bits (134), Expect = 9e-09
 Identities = 49/359 (13%), Positives = 99/359 (27%), Gaps = 53/359 (14%)

Query: 8   KAVIVGGSIAGISCAHALLRAGWDVVVLEK------AGGPPTGSPTGAGLGLDRPAQRII 61
           +  IVG   AG+     L +   DV V         +G     +     + + R     +
Sbjct: 24  RIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRKPDEYSGLRLLNTVAHNAVTVQREVALDV 83

Query: 62  QSWLNGRPHLLHLATVPLTIDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALP 121
             W +                         V          + +A   A  + L    L 
Sbjct: 84  NEWPSEEFGYFGHY--------------YYVGGPQPMRFYGDLKAPSRAVDYRLYQPMLM 129

Query: 122 PEIFLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSIRQSFLSDF 181
             +  RG ++           V+      +  E +  + +LLV   G   ++ + F    
Sbjct: 130 RALEARGGKF-------CYDAVSA-----EDLEGLSEQYDLLVVCTG-KYALGKVFEKQS 176

Query: 182 KL-RYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELLNKRL 240
           +   +        V  F GI+++ I        P  G+    ++ + + +          
Sbjct: 177 ENSPFEKPQRALCVGLFKGIKEAPIRAVTMSFSPGHGE--LIEIPTLSFN------GMST 228

Query: 241 NWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYD- 299
             V   +    +                ++  E      P   + I   +    N+  D 
Sbjct: 229 ALVLENHIGSDLEVLAHTKYDDDPRAFLDLMLEKLGKHHPSVAERIDPAEFDLANSSLDI 288

Query: 300 ---------CDPLKQIF-WSNVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGV 348
                     D    +     ++ +GD      P   +  NM+   A +LG+ +    V
Sbjct: 289 LQGGVVPAFRDGHATLNNGKTIIGLGDIQATVDPVLGQGANMASYAAWILGEEILAHSV 347

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} Length = 512

 Score = 55.3 bits (133), Expect = 2e-08
 Identities = 57/425 (13%), Positives = 117/425 (27%), Gaps = 58/425 (13%)

Query: 10  VIVGGSIAGISCAHALLRAGWDVVVLEKA-------GG---PPTGSPTGAGLGLDRPAQR 59
           +++GG   G + A  +   G  V++LE+        G    P T     A LGL    +R
Sbjct: 11  IVIGGGPGGSTLASFVAMRGHRVLLLEREAFPRHQIGESLLPATVHGICAMLGLTDEMKR 70

Query: 60  IIQSWLNGRPHLLHLATVPLTIDQNQATDNAK-VTRTLARDDNFNFRAAHWADLHGLLYN 118
                  G          P T    +  D+       + R   F+      ++  G+   
Sbjct: 71  AGFPIKRGGTFRWGKEPEPWTFGFTRHPDDPYGFAYQVERAR-FDDMLLRNSERKGV--- 126

Query: 119 ALPPEIFLRGHQYLSFCISEVK-TTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSIRQSF 177
                     H+ +       +   V  +         +      +V A G  + + Q+ 
Sbjct: 127 -----DVRERHEVIDVLFEGERAVGVRYRNT---EGVELMAHARFIVDASGNRTRVSQAV 178

Query: 178 ----LSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFY 233
                S F    + Y  +             I+        D G   Y  L+    SV  
Sbjct: 179 GERVYSRFFQNVALYGYFENGKRLPAPRQGNILSAAF---QD-GWFWYIPLSDTLTSVGA 234

Query: 234 ELLNKRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPF 293
            +  +        +  E  +             I       E +     V      +   
Sbjct: 235 VVSREAAE--AIKDGHEAALL----------RYIDRCPIIKEYLAPATRVTTGDYGEIRI 282

Query: 294 INAMYDCDPLKQIFWSNVVLIGDAAH---PTTPHGLRSTNMSILDAMVLGKSLEKW--GV 348
                 C      + + + L+GDAA    P    G+   +++   A+++ +++     G 
Sbjct: 283 RKDYSYC--NTSFWKNGMALVGDAACFVDPVFSSGV---HLATYSALLVARAINTCLAGE 337

Query: 349 EGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQGLALPDREPFNTKTASPQDCQELQQKT 408
                  EE++        ++  +  +       +       F +        +   +  
Sbjct: 338 MSEQRCFEEFERRY----RREYGNFYQFLVAFYDMNQDTDSYFWSARKIINTEERANEAF 393

Query: 409 MPFFA 413
           +   A
Sbjct: 394 VRLIA 398

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A* Length = 363

 Score = 54.3 bits (130), Expect = 3e-08
 Identities = 29/183 (15%), Positives = 59/183 (32%), Gaps = 18/183 (9%)

Query: 5   EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGL---------GLDR 55
            + + V++G  + G+S A  L R G+ V +L +       S T A               
Sbjct: 5   SQKRVVVLGSGVIGLSSALILARKGYSVHILARDLPEDVSSQTFASPWAGANWTPFMTLT 64

Query: 56  PAQRIIQSWLNGRPHLLHLA------TVPLTIDQNQATDNAKVTRTLARDDNFNFRAAHW 109
              R  +   +     + L        +  T    Q  D         +D   N+R    
Sbjct: 65  DGPRQAKWEESTFKKWVELVPTGHAMWLKGTRRFAQNEDGLLGHW--YKDITPNYRPLPS 122

Query: 110 ADLHGLLYNALPPEIFLRGHQYLSFCISEVKTT-VTVKAKVLQTDEVIEIKGNLLVAADG 168
           ++            + +   +Y  +   E++    T + + + + E      +L+V A G
Sbjct: 123 SECPPGAIGVTYDTLSVHAPKYCQYLARELQKLGATFERRTVTSLEQAFDGADLVVNATG 182

Query: 169 CLS 171
             +
Sbjct: 183 LGA 185

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* Length = 478

 Score = 53.1 bits (127), Expect = 1e-07
 Identities = 34/130 (26%), Positives = 53/130 (40%), Gaps = 10/130 (7%)

Query: 1   MEKKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKA---GGPPTGSPTGAGLGLDRPA 57
           M +       +VGG I+G++ AH L   G D V+LE +   GG   G+   AG  +++  
Sbjct: 11  MPRTTGMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGG-AVGTHALAGYLVEQGP 69

Query: 58  QRIIQSWLNGRPHLLHLATVPLTIDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLY 117
                S+L+  P    LA       + +A D A   R +        R+   +    L  
Sbjct: 70  ----NSFLDREPATRALAAALNLEGRIRAADPAAKRRYVYTRG--RLRSVPASPPAFLAS 123

Query: 118 NALPPEIFLR 127
           + LP    LR
Sbjct: 124 DILPLGARLR 133

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* Length = 382

 Score = 52.2 bits (126), Expect = 1e-07
 Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 7/72 (9%)

Query: 4  KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQS 63
          K   +AV++GG I G + A+ L +   +  + E   G   G  T A  G+         +
Sbjct: 15 KRHYEAVVIGGGIIGSAIAYYLAKENKNTALFES--GTMGGRTTSAAAGMLGA-----HA 67

Query: 64 WLNGRPHLLHLA 75
              R      A
Sbjct: 68 ECEERDAFFDFA 79

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} Length = 399

 Score = 52.2 bits (126), Expect = 1e-07
 Identities = 29/185 (15%), Positives = 49/185 (26%), Gaps = 41/185 (22%)

Query: 10  VIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQS---WLN 66
           +I G  I G   A+ L R G  VVV+E+A              L     R++++      
Sbjct: 10  LINGCGIGGAMLAYLLGRQGHRVVVVEQARRER---AINGADLLKPAGIRVVEAAGLL-- 64

Query: 67  GRPHLLHLATVPLTIDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-- 124
               +           +                    F  +   D  G         +  
Sbjct: 65  --AEVTRRGGRVRHELEVYHDGELLRY----------FNYSSV-DARGYFILMPCESLRR 111

Query: 125 -------------FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLS 171
                         L   +  +    E      V+   L    V+     ++V ADG  S
Sbjct: 112 LVLEKIDGEATVEMLFETRIEAVQRDERHAIDQVR---LNDGRVLR--PRVVVGADGIAS 166

Query: 172 SIRQS 176
            +R+ 
Sbjct: 167 YVRRR 171

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} Length = 399

 Score = 47.2 bits (113), Expect = 6e-06
 Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 14/76 (18%)

Query: 311 VVLIGDAAH---PTTPHGLRSTNMSILDAMVLGKSL-----EKWGVEGLLSALEEYQTVR 362
           V ++GDA H   P T  G+   N++I DA  L  +L     +   +E  L+    YQ  R
Sbjct: 288 VAMLGDAIHNVHPITGQGM---NLAIEDASALADALDLALRDACALEDALAG---YQAER 341

Query: 363 LPVTSKQVLHSRRLGR 378
            PV    V +   L  
Sbjct: 342 FPVNQAIVSYGHALAT 357

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* Length = 424

 Score = 49.1 bits (117), Expect = 1e-06
 Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 9/79 (11%)

Query: 1  MEKKEKGKAVIVGGSIAGISCAHALLRAGW-DVVVLEKA---GGPPTGSPTGAGLGLDRP 56
          M   +  +  I+G   AG++    L +AG+ D  +LE+    GG    SP   G   +  
Sbjct: 1  MSISKDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGG-KCHSPNYHGRRYEMG 59

Query: 57 AQRIIQSWLNGRPHLLHLA 75
          A   + S+      +  + 
Sbjct: 60 AIMGVPSY----DTIQEIM 74

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} Length = 382

 Score = 48.7 bits (117), Expect = 2e-06
 Identities = 15/34 (44%), Positives = 23/34 (67%)

Query: 4  KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEK 37
           EK + V++GG I G++ AH L + G +V V+EK
Sbjct: 3  PEKSEIVVIGGGIVGVTIAHELAKRGEEVTVIEK 36

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A* Length = 389

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 9/51 (17%), Positives = 20/51 (39%)

Query: 9  AVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQR 59
           ++VG    G++  + L + G   ++++    P T         + R A  
Sbjct: 6  VIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGSHHGDTRIIRHAYG 56

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* Length = 453

 Score = 48.7 bits (116), Expect = 2e-06
 Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 9/68 (13%)

Query: 9  AVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAG---------LGLDRPAQR 59
           +I+GG  AG S A+ L R G  +++++       G               LG+  P   
Sbjct: 9  VLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWNRIGDKPCGDAVSKAHFDKLGMPYPKGE 68

Query: 60 IIQSWLNG 67
           +++ +NG
Sbjct: 69 ELENKING 76

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A* Length = 453

 Score = 48.6 bits (116), Expect = 2e-06
 Identities = 43/233 (18%), Positives = 80/233 (34%), Gaps = 30/233 (12%)

Query: 10  VIVGGSIAGISCAHALLRAGWDVVVLE---KAGG-----PPTGSPTGAGLGLDRPAQRII 61
            IVG   +G++ A AL +AG  V V+E   + GG        G+    G       Q   
Sbjct: 9   AIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDTIDGAVLEIG------GQ--- 59

Query: 62  QSWLNGR-PHLLHLA------TVPLTIDQNQATDNAKVTRTLARDDNFNFRAAHWADLHG 114
             W++     L+ L       T     +      ++   RT    D+F        ++  
Sbjct: 60  --WVSPDQTALISLLDELGLKTFERYREGESVYISSAGERTRYTGDSFPTNETTKKEMDR 117

Query: 115 LLYNALPPEIFLRGHQYLSFCISEVKTTVTVK---AKVLQTDEVIEIKGNLLVAADGCLS 171
           L+         +   +  +  ++    TV+ K          E  +  G  +        
Sbjct: 118 LIDEMDDLAAQIGAEEPWAHPLARDLDTVSFKQWLINQSDDAEARDNIGLFIAGGMLTKP 177

Query: 172 SIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDL 224
           +   S L    L  +   ++  ++D   I D  +I GM++V   + + L  D+
Sbjct: 178 AHSFSAL-QAVLMAASAGSFSHLVDEDFILDKRVIGGMQQVSIRMAEALGDDV 229

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A* Length = 438

 Score = 48.3 bits (115), Expect = 2e-06
 Identities = 20/80 (25%), Positives = 27/80 (33%), Gaps = 8/80 (10%)

Query: 1  MEKKEKGKAVIVGGSIAGISCAHALLRAGW-DVVVLEKAGGPPTGSPTGAGLGLDRPAQR 59
          M   +    +IVG    G S A  L R G+ +V VL+     P  S   AG        +
Sbjct: 1  MAVTKSSSLLIVGAGTWGTSTALHLARRGYTNVTVLDPY---PVPSAISAGND----VNK 53

Query: 60 IIQSWLNGRPHLLHLATVPL 79
          +I S               L
Sbjct: 54 VISSGQYSNNKDEIEVNEIL 73

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... Length = 520

 Score = 48.3 bits (115), Expect = 3e-06
 Identities = 37/227 (16%), Positives = 71/227 (31%), Gaps = 25/227 (11%)

Query: 10  VIVGGSIAGISCAHALLRAGWDVVVLE---KAGG----PPTGSPTGAGLGLDRPAQRIIQ 62
           V+VGG I+G++ A  L  +G +VVVLE   + GG              LG       +  
Sbjct: 8   VVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLG----GSYVG- 62

Query: 63  SWLNGRPHLLHLA------TVPLTIDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLL 116
                +  +L LA      T  +   +         +          +    + D +   
Sbjct: 63  ---PTQNRILRLAKELGLETYKVNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFW 119

Query: 117 YNALPPEIFLRGHQYLSFCISEVKTTVTVK---AKVLQTDEVIEIKGNLLVAADGCLSSI 173
                    +         ++E    +T+K    K+  T+   ++   L V       + 
Sbjct: 120 RTMDDMGREIPSDAPWKAPLAEEWDNMTMKELLDKLCWTESAKQLA-TLFVNLCVTAETH 178

Query: 174 RQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCL 220
             S L             R +   +G ++ + + G  +V   +   L
Sbjct: 179 EVSALWFLWYVKQCGGTTRIISTTNGGQERKFVGGSGQVSERIMDLL 225

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A* Length = 384

 Score = 47.7 bits (113), Expect = 3e-06
 Identities = 24/126 (19%), Positives = 44/126 (34%), Gaps = 25/126 (19%)

Query: 1   MEKKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRI 60
           M+ K   K +IVG   +G      L   G  V ++++          G      R ++  
Sbjct: 1   MKSK---KILIVGAGFSGAVIGRQLAEKGHQVHIIDQR------DHIGGNSYDARDSETN 51

Query: 61  IQSWLNGRPHLLHLATVPLTIDQNQATDNAKVTRTLARDDNFNFRAAH-WADLHGLLYNA 119
           +   + G PH+ H             TDN  V   + +            A ++G +++ 
Sbjct: 52  VMVHVYG-PHIFH-------------TDNETVWNYVNKHAEMMPYVNRVKATVNGQVFS- 96

Query: 120 LPPEIF 125
           LP  + 
Sbjct: 97  LPINLH 102

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A* Length = 639

 Score = 48.4 bits (115), Expect = 4e-06
 Identities = 64/415 (15%), Positives = 124/415 (29%), Gaps = 82/415 (19%)

Query: 10  VIVGGSIAGISCAHALLR-AGWDVVVLEKAGGPPTGSPTGAG-----------LGLDRPA 57
           +IVG   AG++ A  L         ++E+  GP        G                 A
Sbjct: 36  LIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGPMELG-QADGIACRTMEMFEAFEF---A 91

Query: 58  QRIIQSWLNGRPHLLHLATVPLTIDQNQATDNAKVTRTLARDDN------FNFRAAHWAD 111
             I++                +T  +       ++ R     D       F     + A 
Sbjct: 92  DSILK---EACWIN------DVTFWKPDPGQPGRIARHGRVQDTEDGLSEFPHVILNQAR 142

Query: 112 LHGLL---YNALPPEI-FLRGHQYLSFCI----SEVKTTVTVKAKVLQTDEVIE-IKGNL 162
           +H          P  +      + L   +    ++   TVT++         IE ++   
Sbjct: 143 VHDHYLERMRNSPSRLEPHYARRVLDVKVDHGAADYPVTVTLERCDAAHAGQIETVQARY 202

Query: 163 LVAADGCLSSIRQSFLSDFKLRYSG--YCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCL 220
           +V  DG  S++R++          G       GV+D   + D   ++    +  + G  L
Sbjct: 203 VVGCDGARSNVRRAIGRQL----VGDSANQAWGVMDVLAVTDFPDVRYKVAIQSEQGNVL 258

Query: 221 YFDLASGTHSVFYELLNKRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLP 280
                 G                +Y+   +        +  ++ + +      A++V  P
Sbjct: 259 IIPREGGHL------------VRFYVEMDKLDADERVASRNITVEQLI---ATAQRVLHP 303

Query: 281 EFVKVIKETKEPFINAMY--------------DCDPLKQIFWSNVVLIGDAAHPTTPHGL 326
             ++V    K     ++Y              D           V + GDA H  +P   
Sbjct: 304 YKLEV----KNVPWWSVYEIGQRICAKYDDVVDAVATPDSPLPRVFIAGDACHTHSPKAG 359

Query: 327 RSTNMSILDAMVLGKSLEKWGVEGLLSA--LEEYQTVRLPVTSKQVLHSRRLGRI 379
           +  N S+ D+  LG  L    +    +   L  Y + R  V  + +   R   ++
Sbjct: 360 QGMNFSMQDSFNLGWKL-AAVLRKQCAPELLHTYSSERQVVAQQLIDFDREWAKM 413

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* Length = 431

 Score = 47.5 bits (113), Expect = 4e-06
 Identities = 27/121 (22%), Positives = 43/121 (35%), Gaps = 16/121 (13%)

Query: 10  VIVGGSIAGISCAHALLRAGWDVVVLE---KAGG--PPTGSPTGAGLGLDRPAQRIIQSW 64
           ++VGG  +G+  A  L  AG  V++LE   + GG      S    GL ++         +
Sbjct: 5   IVVGGGFSGLKAARDLTNAGKKVLLLEGGERLGGRAYSRESRNVPGLRVEIGGA-----Y 59

Query: 65  LNG--RPHLLHLA---TVPLTIDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNA 119
           L+    P L        +P T   ++ T         A D  F    +    +    Y  
Sbjct: 60  LHRKHHPRLAAELDRYGIP-TAAASEFTSFRHRLGPTAVDQAFPIPGSEAVAVEAATYTL 118

Query: 120 L 120
           L
Sbjct: 119 L 119

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* Length = 489

 Score = 47.6 bits (113), Expect = 5e-06
 Identities = 19/76 (25%), Positives = 25/76 (32%), Gaps = 19/76 (25%)

Query: 4  KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLE-------------------KAGGPPTG 44
          K     V++GG  AG+  A  L +AG+ V VLE                      G    
Sbjct: 9  KGSHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPGGRVWTARGGSEETDLSGETQK 68

Query: 45 SPTGAGLGLDRPAQRI 60
               G   +  A RI
Sbjct: 69 CTFSEGHFYNVGATRI 84

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} Length = 421

 Score = 47.0 bits (112), Expect = 6e-06
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 3/36 (8%)

Query: 8  KAVIVGGSIAGISCAHALLRAGWDVVVLEK---AGG 40
          +AV+VG  + G+     L R G +++VLEK    GG
Sbjct: 2  RAVVVGAGLGGLLAGAFLARNGHEIIVLEKSAMIGG 37

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A* Length = 549

 Score = 46.8 bits (112), Expect = 8e-06
 Identities = 12/33 (36%), Positives = 14/33 (42%)

Query: 8  KAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG 40
            V+VG  IAG+   H     G  V   E A G
Sbjct: 23 DVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASG 55

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 Length = 504

 Score = 47.0 bits (111), Expect = 8e-06
 Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 3/39 (7%)

Query: 5  EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKA---GG 40
             +  ++G  ++G++ A+ L   G +V V E     GG
Sbjct: 12 SAKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGG 50

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli} Length = 372

 Score = 46.6 bits (111), Expect = 8e-06
 Identities = 11/50 (22%), Positives = 19/50 (38%)

Query: 9  AVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQ 58
           +I+G    G +  +   RAG +V++ +    P           L R A 
Sbjct: 5  LIIIGSGSVGAAAGYYATRAGLNVLMTDAHMPPHQHGSHHGDTRLIRHAY 54

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A* Length = 542

 Score = 46.8 bits (112), Expect = 9e-06
 Identities = 10/33 (30%), Positives = 16/33 (48%)

Query: 8  KAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG 40
            ++VG   +G+   + L   G  V V+E AG 
Sbjct: 18 DVLVVGAGFSGLYALYRLRELGRSVHVIETAGD 50

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A Length = 852

 Score = 46.9 bits (110), Expect = 9e-06
 Identities = 13/36 (36%), Positives = 22/36 (61%)

Query: 1   MEKKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLE 36
           +  K+ GK +I+G  ++G++ A  L   G DV +LE
Sbjct: 273 LPTKKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLE 308

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* Length = 498

 Score = 46.8 bits (111), Expect = 1e-05
 Identities = 27/122 (22%), Positives = 40/122 (32%), Gaps = 9/122 (7%)

Query: 8   KAVIVGGSIAGISCAHALLRAGWDVVVLE---KAGGPP-TGSPTGAGLGLDRPAQRI--I 61
             VIVG  +AG+S A+ L  AG  V VLE   + GG   T     AG   +    R+   
Sbjct: 35  HVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRNEEAGWYANLGPMRLPEK 94

Query: 62  QSWLNGRPHLLHLATVPLTIDQNQA---TDNAKVTRTLARDDNFNFRAAHWADLHGLLYN 118
              +        L     + + + A     N +      + D    +        G    
Sbjct: 95  HRIVREYIRKFDLRLNEFSQENDNAWYFIKNIRKKVGEVKKDPGLLKYPVKPSEAGKSAG 154

Query: 119 AL 120
            L
Sbjct: 155 QL 156

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* Length = 397

 Score = 46.3 bits (110), Expect = 1e-05
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 9  AVIVGGSIAGISCAHALLRAGWDVVVLEKAG-GPPTGSPTGAG 50
           V+VGG   G++ A  +   G  V+VLE+       G  +GA 
Sbjct: 7  VVVVGGGPVGLATAWQVAERGHRVLVLERHTFFNENGGTSGAE 49

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A* Length = 545

 Score = 46.4 bits (111), Expect = 1e-05
 Identities = 10/33 (30%), Positives = 17/33 (51%)

Query: 8  KAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG 40
           AV++G  + GI  A  + +AG  V+ +E    
Sbjct: 11 DAVVIGAGVTGIYQAFLINQAGMKVLGIEAGED 43

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A Length = 662

 Score = 46.4 bits (109), Expect = 1e-05
 Identities = 13/36 (36%), Positives = 22/36 (61%)

Query: 1   MEKKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLE 36
           +  K+ GK +I+G  ++G++ A  L   G DV +LE
Sbjct: 102 LPTKKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLE 137

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A* Length = 549

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 35/189 (18%), Positives = 55/189 (29%), Gaps = 41/189 (21%)

Query: 10  VIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGS---PTGA-------GLGLDRPAQR 59
           +I+GG   G++ A  L       +V+E+  G  T       G          G+   A++
Sbjct: 30  LILGGGPVGMALALDLAHRQVGHLVVEQTDGTITHPRVGTIGPRSMELFRRWGV---AKQ 86

Query: 60  IIQSWLNGRPHLLHLATVPLTIDQNQATDNAKVTRTLARDDNFNFRAAHWAD-------- 111
           I      G P    L    +T               + R            +        
Sbjct: 87  IRT---AGWPGDHPLDAAWVT---------RVGGHEVYRIPLGTADTRATPEHTPEPDAI 134

Query: 112 -----LHGLLYNALPPEIFLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAA 166
                L  LL  A+   +     +  SF   +    V      L+T     +    LVA 
Sbjct: 135 CPQHWLAPLLAEAVGERL-RTRSRLDSF--EQRDDHVRATITDLRTGATRAVHARYLVAC 191

Query: 167 DGCLSSIRQ 175
           DG  S  R+
Sbjct: 192 DGASSPTRK 200

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A* Length = 830

 Score = 45.5 bits (108), Expect = 3e-05
 Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 4  KEKGKAVIVGGSIAGISCAHALLRAGW-DVVVLEK 37
              + VI+G  I G + A  L+  GW ++ VL++
Sbjct: 2  ASTPRIVIIGAGIVGTNLADELVTRGWNNITVLDQ 36

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A* Length = 472

 Score = 44.5 bits (105), Expect = 4e-05
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)

Query: 4  KEKGKAVIVGGSIAGISCAHALLRAGW-DVVVLE 36
              + ++VG  ++GIS A  L  AG  D+++LE
Sbjct: 2  TVGPRVIVVGAGMSGISAAKRLSEAGITDLLILE 35

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A* Length = 484

 Score = 44.5 bits (104), Expect = 4e-05
 Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 4/44 (9%)

Query: 1  MEKKEKGKAVIVGGSIAGISCAHALLRAGW-DVVVLEK---AGG 40
          M +    K VI+G    G+  A  L   G+ +  + E     GG
Sbjct: 4  MAELLTPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPGG 47

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G* Length = 495

 Score = 44.2 bits (104), Expect = 6e-05
 Identities = 26/227 (11%), Positives = 55/227 (24%), Gaps = 22/227 (9%)

Query: 3   KKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLE---KAGGPPTGSPTGAGLGLDRPAQR 59
           K      +++GG   G++    L  AG+  ++LE   + GG  + S    G   +     
Sbjct: 36  KDGPWDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGG-RSWSSNIDGYPYEMGGTW 94

Query: 60  IIQSWLNGRPHLLHLATVPLTIDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNA 119
           +   W                        +  V     R +              LL +A
Sbjct: 95  V--HWHQSHVWREITRYKMHNALSPSFNFSRGVNHFQLRTNPTTSTYMTHEAEDELLRSA 152

Query: 120 L----------PPEIFLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKG----NLLVA 165
           L             +    H             ++   ++ Q  + + +         + 
Sbjct: 153 LHKFTNVDGTNGRTVLPFPHDMFYVPEFRKYDEMSYSERIDQIRDELSLNERSSLEAFIL 212

Query: 166 ADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRV 212
                +    SF     L +     +        +   +   G    
Sbjct: 213 LCSGGTLENSSFGEF--LHWWAMSGYTYQGCMDCLMSYKFKDGQSAF 257

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A* Length = 381

 Score = 43.8 bits (104), Expect = 7e-05
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 4/46 (8%)

Query: 8  KAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTG--AGL 51
            +++G  IAG S  + L   G  VVVLE+   P   S TG  A  
Sbjct: 11 DYLVIGAGIAGASTGYWLSAHG-RVVVLEREAQPGYHS-TGRSAAH 54

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} Length = 357

 Score = 43.5 bits (103), Expect = 9e-05
 Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 3/41 (7%)

Query: 1  MEKKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP 41
          M+  +    V++GG  +G+S  + L R+G   V+L+    P
Sbjct: 1  MDSVD---VVVIGGGQSGLSAGYFLRRSGLSYVILDAEASP 38

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 Length = 566

 Score = 43.5 bits (103), Expect = 9e-05
 Identities = 10/32 (31%), Positives = 20/32 (62%)

Query: 10  VIVGGSIAGISCAHALLRAGWDVVVLEKAGGP 41
           ++VG   AG + + A  +AG +V++++KA   
Sbjct: 125 LVVGAGSAGFNASLAAKKAGANVILVDKAPFS 156

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7 Length = 367

 Score = 43.1 bits (101), Expect = 1e-04
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 3/36 (8%)

Query: 8  KAVIVGGSIAGISCAHALLRAGWDVVVLEKA---GG 40
            +IVG  + G  CA+ L +    V+V+EK    GG
Sbjct: 3  DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGG 38

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ... Length = 623

 Score = 43.3 bits (101), Expect = 1e-04
 Identities = 23/110 (20%), Positives = 42/110 (38%), Gaps = 2/110 (1%)

Query: 9   AVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNG- 67
            VIVG    G + A  L+ AG+ V + +  G   +G   GA        Q+ I  ++N  
Sbjct: 49  VVIVGSGPIGCTYARELVGAGYKVAMFD-IGEIDSGLKIGAHKKNTVEYQKNIDKFVNVI 107

Query: 68  RPHLLHLATVPLTIDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLY 117
           +  L+ ++    T+  +  +  +    T    +  N       +L G   
Sbjct: 108 QGQLMSVSVPVNTLVVDTLSPTSWQASTFFVRNGSNPEQDPLRNLSGQAV 157

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* Length = 571

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 2/44 (4%)

Query: 2   EKKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGS 45
              +    V+VG   AG S A +   +G  V+++EK   P  G 
Sbjct: 122 APHDTVDVVVVGSGGAGFSAAISATDSGAKVILIEKE--PVIGG 163

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} Length = 475

 Score = 43.1 bits (101), Expect = 1e-04
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 8/45 (17%)

Query: 1  MEKKEKGKAVIVGGSIAGISCAHALLRA--GWDVVVLEKA---GG 40
          M  K   + VIVGG I G++ A+   RA    ++ +LE     GG
Sbjct: 2  MSSK---RLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGG 43

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} Length = 425

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 3/36 (8%)

Query: 8  KAVIVGGSIAGISCAHALLRAGWDVVVLEK---AGG 40
          K V++G  + G+  A  L +AG +V V E+    GG
Sbjct: 2  KTVVIGAGLGGLLSAARLSKAGHEVEVFERLPITGG 37

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces} Length = 499

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 18/80 (22%), Positives = 25/80 (31%), Gaps = 10/80 (12%)

Query: 10 VIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSW----- 64
          ++VG   AG+  A  L   G DV+VLE+       S    GLG       +         
Sbjct: 16 IVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRTGESR---GLGFTARTMEVFDQRGILPA 72

Query: 65 --LNGRPHLLHLATVPLTID 82
                    H    P+   
Sbjct: 73 FGPVETSTQGHFGGRPVDFG 92

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} Length = 477

 Score = 42.4 bits (99), Expect = 2e-04
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 9/45 (20%)

Query: 1  MEKKEKGKAVIVGGSIAGISCAHALLRAG--WDVVVLEKA---GG 40
          M +      V++GG I+G++ ++ L RA     VV++E +   GG
Sbjct: 1  MGRT----VVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLGG 41

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} Length = 470

 Score = 42.3 bits (99), Expect = 2e-04
 Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 10/49 (20%)

Query: 1  MEKKEKGKAVIVGGSIAGISCAHALLRA------GWDVVVLEKA---GG 40
          M   +K   VI+GG I G++ A  + +         ++ ++E +   GG
Sbjct: 1  MSDGKK-HVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGG 48

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A* Length = 351

 Score = 42.0 bits (98), Expect = 2e-04
 Identities = 32/198 (16%), Positives = 56/198 (28%), Gaps = 24/198 (12%)

Query: 8   KAVIVGGSIAGISCAHALLRAGWDVV------VLEKAGGPPTGSPTGAGL----GLDRPA 57
           + V++G  + G+S A  +      V+      V      P T +   AGL      D   
Sbjct: 2   RVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFTPLTTTDVAAGLWQPYLSDPNN 61

Query: 58  QRIIQSWLNGRPHLLHLAT--------VPLTIDQNQATDNAKVTRTLARDDNFNFRAAHW 109
            +          +LL            + L    N   +             F       
Sbjct: 62  PQEADWSQQTFDYLLSHVHSPNAENLGLFLISGYNLFHEAIPDPSWKDTVLGFRKLTPRE 121

Query: 110 ADLH-GLLYNALPPEIFLRGHQYLSFCISEVKTT--VTVKAKVLQTDEVIEIKGNLLVAA 166
            D+     Y      + L G  YL +    +        + KV   +EV     +++V  
Sbjct: 122 LDMFPDYGYGWFHTSLILEGKNYLQWLTERLTERGVKFFQRKVESFEEVAREGADVIVNC 181

Query: 167 DGCLSSIRQSFLSDFKLR 184
            G  +    +   D  L+
Sbjct: 182 TGVWA---GALQRDPLLQ 196

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces} Length = 500

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 19/80 (23%), Positives = 27/80 (33%), Gaps = 10/80 (12%)

Query: 10 VIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSW----- 64
          ++VG   AG+  A  L  AG +VVVLE+       S    GLG       +         
Sbjct: 15 IVVGAGPAGMMLAGELRLAGVEVVVLERLVERTGESR---GLGFTARTMEVFDQRGILPR 71

Query: 65 --LNGRPHLLHLATVPLTID 82
                    H   +P+   
Sbjct: 72 FGEVETSTQGHFGGLPIDFG 91

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A* Length = 448

 Score = 42.1 bits (99), Expect = 3e-04
 Identities = 11/46 (23%), Positives = 22/46 (47%), Gaps = 2/46 (4%)

Query: 9  AVIVGGSIAGISCAHALLRAGW-DVVVLEKAGGPPTGSPTGAGLGL 53
           V+VG  + G++ A+ L       V+V++    P +G  +G  +  
Sbjct: 26 YVVVGAGVVGLAAAYYLKVWSGGSVLVVDAGHAPGSGD-SGRSMAA 70

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} Length = 342

 Score = 41.7 bits (96), Expect = 3e-04
 Identities = 20/103 (19%), Positives = 30/103 (29%), Gaps = 8/103 (7%)

Query: 8   KAVIVGGSIAGISCAHALLRAGWD---VVVLEKAGGPPTGSPT-----GAGLGLDRPAQR 59
           + +IVG  + G  CA  L R       + V +KA        T           D  AQ 
Sbjct: 3   QVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDSGGRMTTACSPHNPQCTADLGAQY 62

Query: 60  IIQSWLNGRPHLLHLATVPLTIDQNQATDNAKVTRTLARDDNF 102
           I  +    + H      +         +   +       D NF
Sbjct: 63  ITCTPHYAKKHQRFYDELLAYGVLRPLSSPIEGMVMKEGDCNF 105

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A* Length = 516

 Score = 41.7 bits (97), Expect = 3e-04
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 4  KEKGKAVIVGGSIAGISCAHALLRAGW-DVVVLE 36
            K K +I+G  IAG+  A  L + G  D +VLE
Sbjct: 6  PAKKKVIIIGAGIAGLKAASTLHQNGIQDCLVLE 39

>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine dinucleotide BIND isomerase; HET: FDA; 2.25A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* Length = 513

 Score = 41.8 bits (97), Expect = 4e-04
 Identities = 8/45 (17%), Positives = 18/45 (40%), Gaps = 5/45 (11%)

Query: 1  MEKKEKG-KAVIVGGSIAGISCAHALLRA-GWDVVVLEKA---GG 40
          M   +     +++G    G+  A  L +  G   ++++     GG
Sbjct: 4  MTHPDISVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGG 48

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A* Length = 397

 Score = 41.3 bits (96), Expect = 5e-04
 Identities = 9/35 (25%), Positives = 18/35 (51%)

Query: 3  KKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEK 37
          + +    +IVG   AG   A  L  +G  V+++++
Sbjct: 26 ESKGFDYLIVGAGFAGSVLAERLASSGQRVLIVDR 60

>1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding subunit); electron transport(flavocytochrome); HET: FAD HEM; 2.53A {Allochromatium vinosum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 401

 Score = 41.3 bits (97), Expect = 5e-04
 Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 2/35 (5%)

Query: 6  KGKAVIVGGSIAGISCAHALLRAG--WDVVVLEKA 38
            K V+VGG   G + A  +  A    +V ++E  
Sbjct: 2  GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPN 36

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} Length = 369

 Score = 41.0 bits (97), Expect = 5e-04
 Identities = 13/36 (36%), Positives = 21/36 (58%)

Query: 9  AVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTG 44
           +++G  + G++ A AL   G +V+V E A G  TG
Sbjct: 7  CIVIGAGVVGLAIARALAAGGHEVLVAEAAEGIGTG 42

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A* Length = 665

 Score = 41.2 bits (96), Expect = 6e-04
 Identities = 56/425 (13%), Positives = 122/425 (28%), Gaps = 70/425 (16%)

Query: 22  AHALLRAGWDVVVLEKAGGPPTGSPTGAGL------GLDRPAQRII-QSWLNG--RPHLL 72
           A  +L    D+  +        G             G+ R  Q ++ Q  +       + 
Sbjct: 71  ADKILSEANDMSTIALYNPDENGHIRRTDRIPDTLPGISRYHQVVLHQGRIERRILDSIA 130

Query: 73  HLATVPLTIDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEIFLRGHQYL 132
            ++   + +++    +  ++  + A D            +       L          + 
Sbjct: 131 EISDTRIKVERPLIPEKMEIDSSKAEDPEAYPVTMTLRYMSEDESTPLQFGHKTENGLFR 190

Query: 133 SFCISEVKTTVTVKAKVLQTDEVIE-IKGNLLVAADGCLSSIRQSFLSDFKLRYSGYCAW 191
           S   ++ +     +    +    IE +    ++  DG  S +R++   +          W
Sbjct: 191 SNLQTQEEEDANYRLPEGKEAGEIETVHCKYVIGCDGGHSWVRRTLGFEMIGE-QTDYIW 249

Query: 192 RGVLDFSGIEDSEIIKG-MRRVYPDLGKCLYFDLASGTHSVFYELLNKRLNWVWYINQPE 250
            GVLD     +   I+        + G  +     +     + +L            Q  
Sbjct: 250 -GVLDAVPASNFPDIRSRCAIHSAESGSIMIIPRENNLVRFYVQL------------QAR 296

Query: 251 PIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDPLKQIFWSN 310
               G     + + +++      A+K++ P                 Y  D  +  +++ 
Sbjct: 297 AEKGGRVDRTKFTPEVVI---ANAKKIFHP-----------------YTFDVQQLDWFTA 336

Query: 311 ----------------VVLIGDAAHPTTPHGLRSTNMSILDAMVLG----KSLEKWGVEG 350
                           V + GDA H  +P   +  N S++D   LG      L       
Sbjct: 337 YHIGQRVTEKFSKDERVFIAGDACHTHSPKAGQGMNTSMMDTYNLGWKLGLVLTGRAKRD 396

Query: 351 LLSALEEYQTVRLPVTSKQVLHSRRLGRIKQGLALPDREPFNTKTASPQDCQELQQKTMP 410
           +L     Y+  R P     +    +  R+  G   P ++  +    S    +E   K   
Sbjct: 397 ILKT---YEEERQPFAQALIDFDHQFSRLFSG--RPAKDVADEMGVSMDVFKEAFVKGNE 451

Query: 411 FFADL 415
           F +  
Sbjct: 452 FASGT 456

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A* Length = 504

 Score = 40.8 bits (95), Expect = 7e-04
 Identities = 21/103 (20%), Positives = 32/103 (31%), Gaps = 5/103 (4%)

Query: 9   AVIVGGSIAGISCAHALLRAGWDVVVLEKAGG--PPTGSPTGAGLGLDRPAQRIIQSWLN 66
           AV++G        A  L  AG   ++LE  G      G       G+  P +R   SW  
Sbjct: 8   AVVIGTGYGAAVSALRLGEAGVQTLMLE-MGQLWNQPGPDGNIFCGMLNPDKRS--SWFK 64

Query: 67  GRPHLLHLATVPLTIDQNQATDNAKVTRTLARDDNFNFRAAHW 109
            R      + + L +        A V   +  D    +     
Sbjct: 65  NRTEAPLGSFLWLDVVNRNIDPYAGVLDRVNYDQMSVYVGRGV 107

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A* Length = 510

 Score = 40.4 bits (95), Expect = 8e-04
 Identities = 13/30 (43%), Positives = 19/30 (63%)

Query: 10 VIVGGSIAGISCAHALLRAGWDVVVLEKAG 39
          V+ G  IAG++ +    RAG DV+VLE+  
Sbjct: 45 VVAGYGIAGVAASIEAARAGADVLVLERTS 74

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	426
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	100.0
4hb9_A	412	Similarities with probable monooxygenase; flavin,	100.0
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	100.0
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	100.0
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	100.0
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	100.0
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	100.0
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	100.0
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	100.0
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	100.0
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	100.0
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	100.0
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	100.0
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	100.0
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	100.0
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	100.0
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	100.0
3atr_A	453	Conserved archaeal protein; saturating double bond	100.0
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	100.0
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	100.0
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	100.0
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	100.0
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	100.0
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	100.0
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	99.97
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	99.97
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	99.97
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	99.96
2bry_A	497	NEDD9 interacting protein with calponin homology a	99.9
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.76
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	99.59
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	99.57
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.52
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	99.5
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	99.5
3dme_A	369	Conserved exported protein; structural genomics, P	99.47
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.46
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	99.44
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	99.44
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.43
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	99.43
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	99.42
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	99.4
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	99.4
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	99.39
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	99.36
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	99.36
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	99.35
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	99.35
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	99.34
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	99.33
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	99.32
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	99.29
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	99.28
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	99.28
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	99.28
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	99.28
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	99.27
2cul_A	232	Glucose-inhibited division protein A-related PROT	99.27
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	99.26
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	99.26
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	99.25
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	99.24
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	99.24
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	99.23
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	99.23
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	99.23
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	99.22
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	99.22
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	99.22
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	99.21
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	99.21
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	99.19
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	99.18
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	99.17
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	99.17
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	99.15
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	99.13
4fk1_A	304	Putative thioredoxin reductase; structural genomic	99.13
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	99.13
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	99.13
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	99.12
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	99.11
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	99.11
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	99.11
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	99.1
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	99.08
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	99.08
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	99.08
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	99.07
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	99.05
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	99.04
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	99.03
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	99.01
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	99.01
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	99.0
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	98.98
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	98.97
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	98.96
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	98.94
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	98.94
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	98.93
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	98.91
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	98.9
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	98.89
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	98.89
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	98.89
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	98.87
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	98.84
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	98.84
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	98.8
3r9u_A	315	Thioredoxin reductase; structural genomics, center	98.79
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	98.79
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	98.76
1ojt_A	482	Surface protein; redox-active center, glycolysis,	98.76
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	98.76
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	98.74
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.72
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	98.72
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	98.7
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	98.65
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	98.65
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	98.62
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	98.62
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	98.61
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	98.6
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	98.6
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	98.59
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	98.58
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	98.57
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	98.57
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	98.57
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	98.57
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	98.54
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	98.51
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	98.51
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	98.5
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	98.5
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	98.5
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	98.49
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	98.48
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	98.47
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	98.46
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	98.45
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	98.45
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	98.45
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	98.45
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	98.45
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.41
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	98.41
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	98.41
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	98.41
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	98.4
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	98.4
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.38
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	98.38
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	98.36
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	98.36
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	98.35
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	98.34
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	98.31
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	98.31
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	98.31
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	98.3
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	98.28
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	98.27
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	98.26
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	98.26
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	98.25
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	98.24
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	98.23
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	98.22
4dna_A	463	Probable glutathione reductase; structural genomic	98.22
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	98.21
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	98.2
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	98.2
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	98.17
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	98.15
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	98.14
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	98.13
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	98.12
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	98.12
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	98.12
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	98.11
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	98.1
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	98.09
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	98.08
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	98.08
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	98.06
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	98.04
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	98.03
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	98.01
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	98.01
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	98.01
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.0
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	98.0
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	97.99
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	97.99
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	97.98
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	97.97
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	97.97
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	97.97
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	97.95
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	97.95
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	97.93
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	97.93
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	97.91
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.9
1ojt_A	482	Surface protein; redox-active center, glycolysis,	97.89
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	97.89
1fec_A	490	Trypanothione reductase; redox-active center, oxid	97.87
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	97.85
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	97.84
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	97.84
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	97.83
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	97.82
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	97.82
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	97.82
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	97.81
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	97.81
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	97.81
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	97.8
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	97.8
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	97.79
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	97.79
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	97.79
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	97.79
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	97.78
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	97.76
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	97.76
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	97.75
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	97.75
1fec_A	490	Trypanothione reductase; redox-active center, oxid	97.74
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	97.73
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.72
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	97.71
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	97.71
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	97.7
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	97.7
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	97.69
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	97.68
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	97.68
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	97.68
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	97.67
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	97.67
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	97.67
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	97.65
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	97.65
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	97.64
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	97.63
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	97.62
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	97.61
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	97.61
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	97.59
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	97.57
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	97.57
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	97.56
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	97.55
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	97.54
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	97.53
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	97.52
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	97.51
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	97.5
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	97.49
3r9u_A	315	Thioredoxin reductase; structural genomics, center	97.49
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	97.47
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	97.44
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	97.42
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	97.39
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	97.37
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	97.35
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	97.35
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	97.32
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	97.3
4dna_A	463	Probable glutathione reductase; structural genomic	97.26
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	97.26
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	97.2
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	97.09
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	97.08
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	97.05
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	96.93
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	96.92
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	96.92
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	96.78
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	96.77
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	96.77
1id1_A	153	Putative potassium channel protein; RCK domain, E.	96.75
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	96.71
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	96.63
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	96.6
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	96.5
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	96.4
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	96.39
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	96.37
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	96.35
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	96.33
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	96.29
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	96.16
3c85_A	183	Putative glutathione-regulated potassium-efflux S	96.13
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	96.09
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	96.03
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	96.02
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	95.95
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	95.93
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	95.93
3tl2_A	315	Malate dehydrogenase; center for structural genomi	95.9
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	95.86
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	95.84
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	95.8
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	95.76
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	95.75
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	95.72
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	95.72
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	95.65
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	95.64
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	95.51
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	95.44
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	95.43
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	95.38
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	95.38
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	95.36
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	95.32
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	95.3
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	95.25
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	95.25
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	95.23
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	95.2
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	95.2
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	95.18
3qha_A	296	Putative oxidoreductase; seattle structural genomi	95.17
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	95.15
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	95.11
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	95.11
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	95.1
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	95.09
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	95.09
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	95.07
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	95.06
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	95.03
4g65_A	461	TRK system potassium uptake protein TRKA; structur	95.02
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	95.0
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	95.0
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	94.97
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	94.97
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	94.91
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	94.9
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	94.86
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	94.84
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	94.82
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	94.79
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	94.75
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	94.74
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	94.71
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	94.63
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	94.59
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	94.59
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	94.56
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	94.52
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	94.46
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	94.46
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	94.46
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	94.45
4ezb_A	317	Uncharacterized conserved protein; structural geno	94.42
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	94.38
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	94.35
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	94.33
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	94.32
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	94.31
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	94.3
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	94.29
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	94.28
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	94.27
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	94.26
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	94.24
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	94.24
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	94.23
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	94.22
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	94.21
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	94.2
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	94.2
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	94.19
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	94.18
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	94.18
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	94.15
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	94.13
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	94.13
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	94.06
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	94.03
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	94.01
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	94.01
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	93.92
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	93.88
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	93.88
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	93.85
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	93.76
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	93.72
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	93.68
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	93.68
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	93.61
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	93.54
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	93.52
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	93.48
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	93.45
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	93.44
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	93.42
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	93.4
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	93.39
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	93.35
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	93.29
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	93.29
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	93.22
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	93.2
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	93.18
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	93.18
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	93.16
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	93.15
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	93.12
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	93.1
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	93.06
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	93.06
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	93.04
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	93.04
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	93.01
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	93.01
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	93.0
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	93.0
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	92.99
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	92.98
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	92.89
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	92.8
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	92.79
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	92.78
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	92.77
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	92.76
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	92.73
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	92.68
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	92.67
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	92.57
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	92.57
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	92.56
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	92.53
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	92.52
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	92.47
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	92.46
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	92.37
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	92.34
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	92.31
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	92.3
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	92.3
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	92.23
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	92.22
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	92.2
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	92.16
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	92.13
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	92.13
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	92.0
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	91.96
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	91.95
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	91.93
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	91.92
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	91.91
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	91.85
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	91.81
3k5i_A	403	Phosphoribosyl-aminoimidazole carboxylase; purine	91.8
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	91.8
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	91.78
2we8_A	386	Xanthine dehydrogenase; oxidoreductase; 2.30A {Myc	91.74
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	91.71
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	91.66
4egb_A	346	DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce	91.66
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	91.62
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	91.61
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	91.54
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	91.53
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	91.52
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	91.49
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	91.46
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	91.44
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	91.4
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	91.38
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	91.3
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	91.15
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	91.15
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	90.49
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	91.08
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	91.08
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	91.07
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	91.04
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	90.99
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	90.95
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	90.88
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	90.87
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	90.86
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	90.77
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	90.77
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	90.74
2qrj_A	394	Saccharopine dehydrogenase, NAD+, L-lysine- formin	90.71
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	90.66
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	90.6
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	90.55

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=100.00  E-value=3e-45  Score=354.84  Aligned_cols=343  Identities=22%  Similarity=0.286  Sum_probs=256.8

Q ss_pred             CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecc
Q 014324            4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQ   83 (426)
Q Consensus         4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~   83 (426)
                      ++++||+||||||+||++|+.|+++|++|+||||.+.+..   .++++.+.++++++|+++|+  .+.+...+.+.....
T Consensus        21 ~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~~~~---~~~~~~l~~~~~~~l~~lg~--~~~~~~~~~~~~~~~   95 (407)
T 3rp8_A           21 QGHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKP---VGAAISVWPNGVKCMAHLGM--GDIMETFGGPLRRMA   95 (407)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSCC-------CEEEECHHHHHHHHHTTC--HHHHHHHSCCCCEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCC---cCeeEEECHHHHHHHHHCCC--HHHHHhhcCCCcceE
Confidence            4678999999999999999999999999999999987653   57889999999999999988  666665554432211


Q ss_pred             ccccc-ccccccccc----ccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEE
Q 014324           84 NQATD-NAKVTRTLA----RDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIE  157 (426)
Q Consensus        84 ~~~~~-~~~~~~~~~----~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~  157 (426)
                      ..... ++.+.....    .......+.++|..|++.|.+.+++ + |+++++|++++.+++  .|+++   +.+|++  
T Consensus        96 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~-~~i~~~~~v~~i~~~~~--~v~v~---~~~g~~--  167 (407)
T 3rp8_A           96 YRDFRSGENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGR-DSVQFGKRVTRCEEDAD--GVTVW---FTDGSS--  167 (407)
T ss_dssp             EEETTTCCEEEEEECHHHHHHHSSCCEEEEHHHHHHHHHHHHCG-GGEEESCCEEEEEEETT--EEEEE---ETTSCE--
T ss_pred             EEECCCCCEeEEecchhhhhhcCCceEEEEHHHHHHHHHHhCCc-CEEEECCEEEEEEecCC--cEEEE---EcCCCE--
Confidence            12222 322111111    1112445678999999999998877 6 999999999997544  57766   677874  


Q ss_pred             EeecEEEeccCCchhhhhhhcC-CCcccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEEEec
Q 014324          158 IKGNLLVAADGCLSSIRQSFLS-DFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELL  236 (426)
Q Consensus       158 ~~~d~vI~AdG~~S~vR~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (426)
                      ++||+||+|||.+|.+|+++.+ ...+.+.++..|.+.++.+...            + .......+++++++++++|++
T Consensus       168 ~~a~~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~------------~-~~~~~~~~~~~~~~~~~~p~~  234 (407)
T 3rp8_A          168 ASGDLLIAADGSHSALRPWVLGFTPQRRYAGYVNWNGLVEIDEAL------------A-PGDQWTTFVGEGKQVSLMPVS  234 (407)
T ss_dssp             EEESEEEECCCTTCSSHHHHHSSCCCCEEEEEEEEEEEEECCTTT------------C-CTTEEEEEEETTEEEEEEEET
T ss_pred             EeeCEEEECCCcChHHHHHhcCCCCCCcccCcEEEEEEEeccccc------------C-CCCceEEEECCCcEEEEEEcC
Confidence            8999999999999999999843 3466778888888887654211            1 112233455788999999999


Q ss_pred             CCeeeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcce--EeeeeccCCCCccccccEEEe
Q 014324          237 NKRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPF--INAMYDCDPLKQIFWSNVVLI  314 (426)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~p~~~~~~~rv~Lv  314 (426)
                      ++...|.+....+....        .+.+...+.+......|.+.+.++++......  .+..+...+.++|..+|++||
T Consensus       235 ~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~Lv  306 (407)
T 3rp8_A          235 AGRFYFFFDVPLPAGLA--------EDRDTLRADLSRYFAGWAPPVQKLIAALDPQTTNRIEIHDIEPFSRLVRGRVALL  306 (407)
T ss_dssp             TTEEEEEEEEECCTTCS--------CCTTTHHHHHHHHTTTCCHHHHHHHHHSCGGGCEEEEEEECCCCSCCEETTEEEC
T ss_pred             CCeEEEEEEeCCCcCCC--------CCchhHHHHHHHHhcCCChHHHHHHHcCCccceeEEeeEecCCCCceecCCEEEE
Confidence            99888877765433210        11222233334456778888888887655432  355666666788999999999


Q ss_pred             ccccccCCCCCcchhhhhHHHHHHHHHHHHhhccccHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhc
Q 014324          315 GDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQG  382 (426)
Q Consensus       315 GDAAh~~~P~~G~G~~~ai~Da~~La~~L~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~  382 (426)
                      |||||.++|+.|||+|+||+||..|+++|....  +.+.+|+.|+++|++++..+++.+..+.++++.
T Consensus       307 GDAAh~~~P~~GqG~~~al~da~~La~~L~~~~--~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~  372 (407)
T 3rp8_A          307 GDAGHSTTPDIGQGGCAAMEDAVVLGAVFRQTR--DIAAALREYEAQRCDRVRDLVLKARKRCDITHG  372 (407)
T ss_dssp             GGGTCCCCGGGSCHHHHHHHHHHHHHHHHHSCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             EcccccCCcchhhhHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence            999999999999999999999999999998654  788999999999999999999999999999864

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=100.00  E-value=1.7e-44  Score=350.16  Aligned_cols=356  Identities=16%  Similarity=0.156  Sum_probs=237.5

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhcc---Ccceeecc
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLA---TVPLTIDQ   83 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~   83 (426)
                      ++|+||||||+||++|+.|+++|++|+||||.+.+... ..|.++.+.|+++++|+++|+  .+.+...   ........
T Consensus         2 m~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~~~~~-~~G~~i~l~~~~~~~L~~lg~--~~~~~~~~~~~~~~~~~~   78 (412)
T 4hb9_A            2 MHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSAASSI-LPGYGIHINSFGKQALQECLP--AENWLAFEEASRYIGGQS   78 (412)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCSS-CCCCEEEECHHHHHHHHHHSC--HHHHHHHHHHCEEECCCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEecCCCCCcC-CCceEEeeCHHHHHHHHHcCC--hHHHHHhhhhhcccCcce
Confidence            68999999999999999999999999999999887542 257789999999999999987  4433221   11111111


Q ss_pred             ccc-ccccccc------ccccccCCCcchhccHHHHHHHHHhcCCCCeeEeeeeEEEEEEecCCceEEEEEEeccCCceE
Q 014324           84 NQA-TDNAKVT------RTLARDDNFNFRAAHWADLHGLLYNALPPEIFLRGHQYLSFCISEVKTTVTVKAKVLQTDEVI  156 (426)
Q Consensus        84 ~~~-~~~~~~~------~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~  156 (426)
                      ... ..+....      .............++|..|+++|.+.++. .|++++++++++..++ ..|+++   ++||++ 
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~-~v~~~~~v~~~~~~~~-~~v~v~---~~dG~~-  152 (412)
T 4hb9_A           79 RFYNERMRLLAVHGGISPMAGKIISEQRLSISRTELKEILNKGLAN-TIQWNKTFVRYEHIEN-GGIKIF---FADGSH-  152 (412)
T ss_dssp             EEECTTSCEEEC--------------CEEEEEHHHHHHHHHTTCTT-TEECSCCEEEEEECTT-SCEEEE---ETTSCE-
T ss_pred             eEecCCcceecccCCccccccccccccceEeeHHHHHHHHHhhccc-eEEEEEEEEeeeEcCC-CeEEEE---ECCCCE-
Confidence            111 1111110      00111122334568999999999987753 3899999999986443 467777   788986 


Q ss_pred             EEeecEEEeccCCchhhhhhhcCCCcccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEEE--
Q 014324          157 EIKGNLLVAADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYE--  234 (426)
Q Consensus       157 ~~~~d~vI~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  234 (426)
                       ++||+||||||++|.||+++.+.....+.++..+.+.....+....    .....+........+...++...+.+.  
T Consensus       153 -~~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (412)
T 4hb9_A          153 -ENVDVLVGADGSNSKVRKQYLPFIERFDVGVSMIIGRARLTPALTA----LLPQNFRDGTPNSIVPKSPDWLFISMWRA  227 (412)
T ss_dssp             -EEESEEEECCCTTCHHHHHHSTTCCCEEEEEEEEEEEEECCHHHHH----HSCGGGTSSCCEEECCSSSEEEEEEEEEE
T ss_pred             -EEeeEEEECCCCCcchHHHhCCCccccccceeEEEEEEecchhhhc----chhhhhccCCcceEeecCCCcceeeeeec
Confidence             8999999999999999999988888778888888877766532111    111111111111111111111111111  


Q ss_pred             ---------ecCCeeeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcc--eEeeeeccCCC
Q 014324          235 ---------LLNKRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEP--FINAMYDCDPL  303 (426)
Q Consensus       235 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~p~  303 (426)
                               .........|...........  .....+.+.+.+.+......|.|.+.++++.....  ..+......+.
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~p~~~~li~~~~~~~~~~~~~~~~~~~  305 (412)
T 4hb9_A          228 PVNIHVEASLAEIDNFIVWVYVAATDSLPD--NITDFSAEALCDLVQSRMISWDPSLHTLVQQSDMENISPLHLRSMPHL  305 (412)
T ss_dssp             ESCTTSCGGGCCEEEEEEEEEEEEGGGSCT--TGGGCCHHHHHHHHHHHTTTSCHHHHHHHHTSCTTCCEEEEEEECCCC
T ss_pred             CCceeEEEeccCCCceEEEEEecccccccc--cccccchHHHHHHHHHHhccCChHHHHHHHhcccceeccchhcccccc
Confidence                     111111112221111111000  01223455556666667788999999998876543  34445556677


Q ss_pred             CccccccEEEeccccccCCCCCcchhhhhHHHHHHHHHHHHhh--ccccHHHHHHHHHHhhhhhHHHHHHHHHHhhh
Q 014324          304 KQIFWSNVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKW--GVEGLLSALEEYQTVRLPVTSKQVLHSRRLGR  378 (426)
Q Consensus       304 ~~~~~~rv~LvGDAAh~~~P~~G~G~~~ai~Da~~La~~L~~~--~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~  378 (426)
                      ++|..|||+|+|||||.|+|+.|||+|+||+||.+|+++|...  ...+.+++|+.|+++|+++++.+++.+.+.+.
T Consensus       306 ~~~~~grv~LiGDAAH~~~P~~GqG~n~ai~DA~~La~~L~~~~~~~~~~~~aL~~Ye~~R~~~~~~~~~~s~~~~~  382 (412)
T 4hb9_A          306 LPWKSSTVTLLGDAIHNMTPMTGSGANTALRDALLLTQKLASVASGHEELVKAISDYEQQMRAYANEIVGISLRSAQ  382 (412)
T ss_dssp             CCCCCCSEEECTHHHHCSSCCSSSHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccCEEEEEcccccCCCchhhHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8899999999999999999999999999999999999999886  34567899999999999999999999988765

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=100.00  E-value=1.3e-43  Score=342.10  Aligned_cols=349  Identities=22%  Similarity=0.378  Sum_probs=250.2

Q ss_pred             CCCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeec
Q 014324            3 KKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTID   82 (426)
Q Consensus         3 ~~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~   82 (426)
                      .|.++||+||||||+||++|+.|+++|++|+||||.+.+..  ..++++.+.++++++|+++|+.  +  .....+....
T Consensus         2 ~~~~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~--~~~~g~~l~~~~~~~l~~~g~~--~--~~~~~~~~~~   75 (397)
T 2vou_A            2 SPTTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLS--GFGTGIVVQPELVHYLLEQGVE--L--DSISVPSSSM   75 (397)
T ss_dssp             CCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCC--CCSCEEECCHHHHHHHHHTTCC--G--GGTCBCCCEE
T ss_pred             CCCCCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCC--ccccccccChhHHHHHHHcCCc--c--ccccccccce
Confidence            35678999999999999999999999999999999987522  3567889999999999999983  2  2222222111


Q ss_pred             ccccc-ccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEee
Q 014324           83 QNQAT-DNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKG  160 (426)
Q Consensus        83 ~~~~~-~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~  160 (426)
                      ..... .+..+...     ..+...++|..+.+.|.+.+ .++ ++++++|++++.+++  .++++   +.+|++  ++|
T Consensus        76 ~~~~~~~g~~~~~~-----~~~~~~~~~~~l~~~L~~~~-~~~~i~~~~~v~~i~~~~~--~v~v~---~~~g~~--~~a  142 (397)
T 2vou_A           76 EYVDALTGERVGSV-----PADWRFTSYDSIYGGLYELF-GPERYHTSKCLVGLSQDSE--TVQMR---FSDGTK--AEA  142 (397)
T ss_dssp             EEEETTTCCEEEEE-----ECCCCEEEHHHHHHHHHHHH-CSTTEETTCCEEEEEECSS--CEEEE---ETTSCE--EEE
T ss_pred             EEEecCCCCccccc-----cCcccccCHHHHHHHHHHhC-CCcEEEcCCEEEEEEecCC--EEEEE---ECCCCE--EEC
Confidence            11111 22211111     11223467888999998876 466 999999999986543  56666   567764  899


Q ss_pred             cEEEeccCCchhhhhhhcCCCcccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEEEecCC--
Q 014324          161 NLLVAADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELLNK--  238 (426)
Q Consensus       161 d~vI~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  238 (426)
                      |+||+|||.+|.+|+++. ...+.+.++..|++.++..... ......+       .....++.+++.++.++|++++  
T Consensus       143 d~vV~AdG~~S~vr~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~g  213 (397)
T 2vou_A          143 NWVIGADGGASVVRKRLL-GIEPTYAGYVTWRGVLQPGEVA-DDVWNYF-------NDKFTYGLLDDGHLIAYPIPGREN  213 (397)
T ss_dssp             SEEEECCCTTCHHHHHHH-CCCCEEEEEEEEEEEECTTSSC-HHHHHHH-------TTEEEEEEETTEEEEEEEECCSST
T ss_pred             CEEEECCCcchhHHHHhc-cCCCCccceEEEEEEeeccccC-hhhhhhh-------cCceeEEecCCCEEEEEECCCCCC
Confidence            999999999999999998 6667788888888888743322 1111000       0123345567778888999864  


Q ss_pred             ----eeeEEEEEecCCCCc--------CCCcce-----eccCHHHHHHHHHHHhhcccHHHHHHhhhcCcceEeeeeccC
Q 014324          239 ----RLNWVWYINQPEPIM--------KGNSVT-----MRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCD  301 (426)
Q Consensus       239 ----~~~~~~~~~~~~~~~--------~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (426)
                          ..+|.|+.+.+....        .+..+.     ...+.+.++++.+.....|.+ +.++++.......+.+... 
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-  291 (397)
T 2vou_A          214 AESPRLNFQWYWNVAEGPDLDELMTDVRGIRLPTSVHNNSLNPHNLRQFHSKGESLFKP-FRDLVLNASSPFVTVVADA-  291 (397)
T ss_dssp             TSCCEEEEEEEEECCTTHHHHHHTBCTTSCBCSSEECGGGCCHHHHHHHHHHHTTSCHH-HHHHHHHCSSCEEEEEEEB-
T ss_pred             ccceeEEEEEEecCCCccchhhhccCCCCcccccccCcccCCHHHHHHHHHHHHhhChH-HHHHHhccCCcceeeeeee-
Confidence                567888876543110        000000     001345556665554556887 8887776555455555443 


Q ss_pred             CCCccccccEEEeccccccCCCCCcchhhhhHHHHHHHHHHHHhhccccHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhh
Q 014324          302 PLKQIFWSNVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQ  381 (426)
Q Consensus       302 p~~~~~~~rv~LvGDAAh~~~P~~G~G~~~ai~Da~~La~~L~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~  381 (426)
                      +.++|..+||+|||||||.|+|+.|||+|+||+||..|+++|...  .+.+.+|+.|+++|++++..+++.++.++++++
T Consensus       292 ~~~~~~~grv~LiGDAAH~~~P~~GqG~n~ai~DA~~La~~L~~~--~~~~~~L~~Ye~~R~~~~~~~~~~s~~~~~~~~  369 (397)
T 2vou_A          292 TVDRMVHGRVLLIGDAAVTPRPHAAAGGAKASDDARTLAEVFTKN--HDLRGSLQSWETRQLQQGHAYLNKVKKMASRLQ  369 (397)
T ss_dssp             CCSCSEETTEEECGGGTSBCCGGGSCHHHHHHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cCCceecCcEEEEeccccccCCcchhhHHHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            567899999999999999999999999999999999999999863  467899999999999999999999999999887


Q ss_pred             cC
Q 014324          382 GL  383 (426)
Q Consensus       382 ~~  383 (426)
                      ..
T Consensus       370 ~~  371 (397)
T 2vou_A          370 HG  371 (397)
T ss_dssp             TT
T ss_pred             cc
Confidence            53

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=100.00  E-value=2.7e-43  Score=358.62  Aligned_cols=387  Identities=15%  Similarity=0.135  Sum_probs=248.6

Q ss_pred             CccEEEEcCChHHHHHHHHHHH-----cCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCccee
Q 014324            6 KGKAVIVGGSIAGISCAHALLR-----AGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLT   80 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~-----~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~   80 (426)
                      ++||+||||||+||++|+.|++     .|++|+||||++.+.   ..++++.++++++++|+++|+  .+.+.+.+.+..
T Consensus         8 ~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~~~~---~~gra~~l~~~tle~l~~lGl--~~~l~~~~~~~~   82 (665)
T 1pn0_A            8 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKV---YNGQADGLQCRTLESLKNLGL--ADKILSEANDMS   82 (665)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCC---CSCSCCEECHHHHHHHHTTTC--HHHHHTTCBCCC
T ss_pred             CCcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCCCCC---CCCceeEEChHHHHHHHHCCC--HHHHHHhccccc
Confidence            5799999999999999999999     999999999998764   367889999999999999998  566655544432


Q ss_pred             eccccccc--ccccc--cc---ccccCCCcchhccHHHHHHHHHhcCCC-C---e-eEeeeeEEEEEEec------CCce
Q 014324           81 IDQNQATD--NAKVT--RT---LARDDNFNFRAAHWADLHGLLYNALPP-E---I-FLRGHQYLSFCISE------VKTT  142 (426)
Q Consensus        81 ~~~~~~~~--~~~~~--~~---~~~~~~~~~~~~~r~~l~~~L~~~~~~-~---~-i~~~~~v~~~~~~~------~~~~  142 (426)
                      ....+...  +....  ..   ......++...++|..++++|.+.+.+ +   + |++++++++++.++      +...
T Consensus        83 ~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~l~q~~le~~L~~~~~~~g~~~v~v~~g~~v~~~~~d~~~~~~~~~~~  162 (665)
T 1pn0_A           83 TIALYNPDENGHIRRTDRIPDTLPGISRYHQVVLHQGRIERRILDSIAEISDTRIKVERPLIPEKMEIDSSKAEDPEAYP  162 (665)
T ss_dssp             EEEEEEECTTSCEEEEEEEESSCTTSCSSCCEECCHHHHHHHHHHHHHHHHTTSSCEECSEEEEEEEECGGGTTCTTCCC
T ss_pred             eEEEEeCCCCcceEeecccCcccCCCCCCeeEEeeHHHHHHHHHHHHHhcCCCceEEEeCCEEEEEEecCcccccCCCCC
Confidence            11111111  11100  00   011123345678999999999987753 4   6 99999999999764      1246


Q ss_pred             EEEEEEec---------------------------------------cCCceEEEeecEEEeccCCchhhhhhhcCCCcc
Q 014324          143 VTVKAKVL---------------------------------------QTDEVIEIKGNLLVAADGCLSSIRQSFLSDFKL  183 (426)
Q Consensus       143 v~v~~~~~---------------------------------------~~g~~~~~~~d~vI~AdG~~S~vR~~l~~~~~~  183 (426)
                      |++++++.                                       .+|+..+++||+||||||++|+||+++......
T Consensus       163 V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~~~~~~~~~G~~~~i~A~~VVGADG~~S~VR~~lg~~~~g  242 (665)
T 1pn0_A          163 VTMTLRYMSEDESTPLQFGHKTENGLFRSNLQTQEEEDANYRLPEGKEAGEIETVHCKYVIGCDGGHSWVRRTLGFEMIG  242 (665)
T ss_dssp             EEEEEEECCGGGSCCCTTCCCCCSSSCCCHHHHHHHHHTSCCCSTTCCTTCEEEEEEEEEEECCCTTCHHHHHHTCCCEE
T ss_pred             EEEEEEecccccccccccccccccccccccccccccccccccccccCCCCceEEEEeCEEEeccCCCCHHHHhcCCCCCC
Confidence            77776542                                       356556799999999999999999998543322


Q ss_pred             cccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEEEecCCeeeEEEEEecCCCCcCCCcceeccC
Q 014324          184 RYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELLNKRLNWVWYINQPEPIMKGNSVTMRVS  263 (426)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (426)
                      .  .+...+++++....          ..+|.......++..+.++++++|.+++..++.+.+....... ........+
T Consensus       243 ~--~~~~~~~v~d~~~~----------~~~p~~~~~~~~~~~~~g~~~~~P~~~~~~r~~~~~~~~~~~~-~~~~~~~~t  309 (665)
T 1pn0_A          243 E--QTDYIWGVLDAVPA----------SNFPDIRSRCAIHSAESGSIMIIPRENNLVRFYVQLQARAEKG-GRVDRTKFT  309 (665)
T ss_dssp             E--EEEEEEEEEEEEEE----------CCCTTTTSEEEEECSSSCEEEEEECSTTCEEEEEEECC-----------CCCC
T ss_pred             C--CccEEEEEEEEEEC----------CCCCCcceEEEEEeCCCceEEEEEcCCCEEEEEEEeCCccccc-cccCcCCCC
Confidence            2  22222345443211          1123222223344456778889999888666555543321100 000011123


Q ss_pred             HHHHHHHHHHHhhcccHHHHHHhhhcCcceEeeeec--cCCCCccc-cccEEEeccccccCCCCCcchhhhhHHHHHHHH
Q 014324          264 NDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYD--CDPLKQIF-WSNVVLIGDAAHPTTPHGLRSTNMSILDAMVLG  340 (426)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~~~~~-~~rv~LvGDAAh~~~P~~G~G~~~ai~Da~~La  340 (426)
                      .+.+.+........+.      +. ......+..+.  ....++|. .+||+|+|||||.|+|+.|||||+||+||.+|+
T Consensus       310 ~e~~~~~~~~~~~~~~------~~-~~~~~~~~~~~~~~r~a~~~~~~gRV~L~GDAAH~~~P~~GqG~N~gi~DA~nLa  382 (665)
T 1pn0_A          310 PEVVIANAKKIFHPYT------FD-VQQLDWFTAYHIGQRVTEKFSKDERVFIAGDACHTHSPKAGQGMNTSMMDTYNLG  382 (665)
T ss_dssp             HHHHHHHHHHHHTTSC------CE-EEEEEEEEEEEEEEEECSCSEETTTEEECGGGTEECCSTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCccc------Cc-eeeEEEEEeeeccceehhhcccCCCEEEEECccccCCCcccCCcchhHHHHHHHH
Confidence            3333332222111111      00 01111223322  33466788 699999999999999999999999999999999


Q ss_pred             HHHHhhc-cccHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhcCCCCCCCCCCCCCCChhhhHHHhhccCCcccCCCccc
Q 014324          341 KSLEKWG-VEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQGLALPDREPFNTKTASPQDCQELQQKTMPFFADLPSLV  419 (426)
Q Consensus       341 ~~L~~~~-~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (426)
                      |+|.... +...+.+|++|+++|+++++.++..++.+.++|.........  +........+.+.+.+...|++|++..+
T Consensus       383 wkLa~vl~g~a~~~lL~tYe~eR~p~a~~~i~~s~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~Y  460 (665)
T 1pn0_A          383 WKLGLVLTGRAKRDILKTYEEERQPFAQALIDFDHQFSRLFSGRPAKDVA--DEMGVSMDVFKEAFVKGNEFASGTAINY  460 (665)
T ss_dssp             HHHHHHHTTCBCGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHSCBCSSTT--CTTSBCHHHHHHHHHHHHHHHTTCCCCC
T ss_pred             HHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccc--cccchhHHHHHHHHHHhhccccccCccc
Confidence            9998762 345678899999999999999999999999999865322111  1112234455565555555677766555

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=100.00  E-value=7.2e-42  Score=330.05  Aligned_cols=359  Identities=16%  Similarity=0.164  Sum_probs=243.4

Q ss_pred             CCCCCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccCh-hHHHHHHHHhcCCchhhhccCcce
Q 014324            1 MEKKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDR-PAQRIIQSWLNGRPHLLHLATVPL   79 (426)
Q Consensus         1 m~~~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~-~~~~~l~~~~~~~~~~~~~~~~~~   79 (426)
                      |+.|.++||+||||||+||++|+.|+++|++|+||||.+.+... ..|.++.+.+ .+.++|+++|+  .+.+.....+.
T Consensus        21 M~~~~~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~-~~g~~~~~~~~~~~~~l~~~gl--~~~~~~~~~~~   97 (398)
T 2xdo_A           21 MNLLSDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREAR-IFGGTLDLHKGSGQEAMKKAGL--LQTYYDLALPM   97 (398)
T ss_dssp             --CCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSSTTCC-CCSCCEECCTTTHHHHHHHTTC--HHHHHHHCBCC
T ss_pred             ccccCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCcccc-ccCCeeeeCCccHHHHHHhcCh--HHHHHHhhccc
Confidence            55567789999999999999999999999999999999876432 2566677765 56899999987  55555444332


Q ss_pred             eeccccccccccccccc-cccCCCcchhccHHHHHHHHHhcCCCCeeEeeeeEEEEEEecCCceEEEEEEeccCCceEEE
Q 014324           80 TIDQNQATDNAKVTRTL-ARDDNFNFRAAHWADLHGLLYNALPPEIFLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEI  158 (426)
Q Consensus        80 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~r~~l~~~L~~~~~~~~i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~  158 (426)
                      .. ......+..+.... ..........++|..|.+.|.+.++...|+++++|++++.++  ..|+++   +.+|++  +
T Consensus        98 ~~-~~~~~~g~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~--~~v~v~---~~~g~~--~  169 (398)
T 2xdo_A           98 GV-NIADEKGNILSTKNVKPENRFDNPEINRNDLRAILLNSLENDTVIWDRKLVMLEPGK--KKWTLT---FENKPS--E  169 (398)
T ss_dssp             CE-EEECSSSEEEEECCCGGGTTSSCCEECHHHHHHHHHHTSCTTSEEESCCEEEEEECS--SSEEEE---ETTSCC--E
T ss_pred             ce-EEECCCCCchhhccccccCCCCCceECHHHHHHHHHhhcCCCEEEECCEEEEEEECC--CEEEEE---ECCCcE--E
Confidence            22 11112232111110 001112334689999999999988763399999999998654  356666   567764  8


Q ss_pred             eecEEEeccCCchhhhhhhcCCCcccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEEEecCC
Q 014324          159 KGNLLVAADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELLNK  238 (426)
Q Consensus       159 ~~d~vI~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (426)
                      +||+||+|||.+|.+|+++.. ..+.+.+...+.+.++...... +....+    ...+  ..+.++++..++.+|.+++
T Consensus       170 ~ad~vV~AdG~~S~vR~~l~~-~~~~~~g~~~~~~~~~~~~~~~-~~~~~~----~~~g--~~~~~~~~~~~~~~p~~~~  241 (398)
T 2xdo_A          170 TADLVILANGGMSKVRKFVTD-TEVEETGTFNIQADIHQPEINC-PGFFQL----CNGN--RLMASHQGNLLFANPNNNG  241 (398)
T ss_dssp             EESEEEECSCTTCSCCTTTCC-CCCEEEEEEEEEEEESSHHHHS-HHHHHH----HTTS--EEEEEETTEEEEEEEEETT
T ss_pred             ecCEEEECCCcchhHHhhccC-CCceEcceEEEEEEeCchhccC-chhHhh----cCCc--eEEEecCCCeEEEEeCCCC
Confidence            999999999999999999743 3456667777777664211111 111111    1112  2234567777788888888


Q ss_pred             eeeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcceEeeeeccCCCCcccc-c--cEEEec
Q 014324          239 RLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDPLKQIFW-S--NVVLIG  315 (426)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~--rv~LvG  315 (426)
                      ..++.+.+..+.......... ..+.+...+.+...+..|.+.+.+++........+.++...+..+|.. +  |++|+|
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LiG  320 (398)
T 2xdo_A          242 ALHFGISFKTPDEWKNQTQVD-FQNRNSVVDFLLKEFSDWDERYKELIHTTLSFVGLATRIFPLEKPWKSKRPLPITMIG  320 (398)
T ss_dssp             EEEEEEEEECCTTC---CCSC-TTCHHHHHHHHHHHTTTSCHHHHHHHHHCSCCEEEEEEECCCCSCCCSCCSSCEEECT
T ss_pred             cEEEEEEEecCcccccccccC-cCCHHHHHHHHHHHHcCCChHHHHHHhCcccceeeeeEeccCCCCcccCCCccEEEEe
Confidence            877776655432211000000 113344444444456778888888887643334455544444446765 5  999999


Q ss_pred             cccccCCCCCcchhhhhHHHHHHHHHHHHhhcccc-HHHHHHHHHHhhhhhHHHHHHHHHHhhhhh
Q 014324          316 DAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEG-LLSALEEYQTVRLPVTSKQVLHSRRLGRIK  380 (426)
Q Consensus       316 DAAh~~~P~~G~G~~~ai~Da~~La~~L~~~~~~~-~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~  380 (426)
                      ||||.++|+.|||+|+||+||.+|+++|.... .+ .+.+|+.|+++|++++..++..+......+
T Consensus       321 DAAh~~~P~~GqG~n~ai~Da~~La~~L~~~~-~~~~~~~L~~Y~~~r~~~~~~~~~~s~~~~~~~  385 (398)
T 2xdo_A          321 DAAHLMPPFAGQGVNSGLVDALILSDNLADGK-FNSIEEAVKNYEQQMFIYGKEAQEESTQNEIEM  385 (398)
T ss_dssp             HHHHCCCCTTSCSHHHHHHHHHHHHHHHHSCC-SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ehhccCCCccCccHHHHHHHHHHHHHHHHhcc-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998753 34 789999999999999999999888777543

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=100.00  E-value=9.5e-42  Score=330.49  Aligned_cols=342  Identities=22%  Similarity=0.276  Sum_probs=233.4

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCc-EEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecc
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWD-VVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQ   83 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~-v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~   83 (426)
                      .++||+||||||+||++|+.|+++|++ |+||||.+.+..   .++++.+.++++++|+++|+  .+.+...+.+.....
T Consensus         3 ~~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~---~g~g~~l~~~~~~~l~~lg~--~~~l~~~~~~~~~~~   77 (410)
T 3c96_A            3 EPIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRP---LGVGINIQPAAVEALAELGL--GPALAATAIPTHELR   77 (410)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCC---CSCEEEECHHHHHHHHHTTC--HHHHHHHSEEECEEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCCccc---ceeEEEEChHHHHHHHHCCC--hHHHHhhCCCcceEE
Confidence            468999999999999999999999999 999999987643   56889999999999999987  566655544332111


Q ss_pred             ccccccccccccc---cccCCCcchhccHHHHHHHHHhcCCC--C-e-eEeeeeEEEEEEecCCceEEEEEEeccCCceE
Q 014324           84 NQATDNAKVTRTL---ARDDNFNFRAAHWADLHGLLYNALPP--E-I-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVI  156 (426)
Q Consensus        84 ~~~~~~~~~~~~~---~~~~~~~~~~~~r~~l~~~L~~~~~~--~-~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~  156 (426)
                      .....+..+....   ......+...++|..|++.|.+.+.+  + + ++++++|++++. ++  .|++++.+..+|+..
T Consensus        78 ~~~~~g~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~g~~~v~~~~~v~~i~~-~~--~v~v~~~~~~~g~~~  154 (410)
T 3c96_A           78 YIDQSGATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEE-RD--GRVLIGARDGHGKPQ  154 (410)
T ss_dssp             EECTTSCEEEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEE-ET--TEEEEEEEETTSCEE
T ss_pred             EEcCCCCEEeeccCCccccCCCCeeeeeHHHHHHHHHHHHHhhCCCcEEEECCEEEEEec-CC--ccEEEEecCCCCCce
Confidence            1112222111110   11122345678999999999887753  3 5 999999999986 33  466664433347655


Q ss_pred             EEeecEEEeccCCchhhhhhhcCCC-cccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecC--CCceEEEE
Q 014324          157 EIKGNLLVAADGCLSSIRQSFLSDF-KLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLA--SGTHSVFY  233 (426)
Q Consensus       157 ~~~~d~vI~AdG~~S~vR~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  233 (426)
                      +++||+||+|||.+|.+|+++.+.. .+.+.+...|+++.+.++..            +  +.. .++++  ++.+++++
T Consensus       155 ~~~ad~vV~AdG~~S~vR~~l~~~~~~~~~~g~~~~~~~~~~~~~~------------~--~~~-~~~~~~~~~~~~~~~  219 (410)
T 3c96_A          155 ALGADVLVGADGIHSAVRAHLHPDQRPLSHGGITMWRGVTEFDRFL------------D--GKT-MIVANDEHWSRLVAY  219 (410)
T ss_dssp             EEEESEEEECCCTTCHHHHHHCTTCCCCEEEEEEEEEEEEEESCCT------------T--SSE-EEEEECTTCCEEEEE
T ss_pred             EEecCEEEECCCccchhHHHhcCCCCCCCcCCeeEEEeeccccccc------------C--CCe-EEEecCCCCcEEEEE
Confidence            6999999999999999999986544 34577777777776543211            0  111 12223  35678888


Q ss_pred             EecC-----CeeeEEEEEecCCCC----cCCCcceeccCHHHHHHHHHHHhhcccH---HHHHHhhhcCcceEeeeeccC
Q 014324          234 ELLN-----KRLNWVWYINQPEPI----MKGNSVTMRVSNDMIKNMHEEAEKVWLP---EFVKVIKETKEPFINAMYDCD  301 (426)
Q Consensus       234 ~~~~-----~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~  301 (426)
                      |+++     +...+.|.+..+...    .....+......   ++++.. +..|.+   .+.++++.......+++....
T Consensus       220 p~~~~~~~~g~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  295 (410)
T 3c96_A          220 PISARHAAEGKSLVNWVCMVPSAAVGQLDNEADWNRDGRL---EDVLPF-FADWDLGWFDIRDLLTRNQLILQYPMVDRD  295 (410)
T ss_dssp             ECCHHHHTTTCEEEEEEEEEEHHHHCCCCSSCCTTCBCCH---HHHHHH-HTTCCBTTBCHHHHHHTCSEEEEEEEEECC
T ss_pred             ecCCcccCCCCcEEEEEEEecCcccccCCCccccCCCCCH---HHHHHH-hcCCCCchhHHHHHHhcCcccceeecccCC
Confidence            8853     333333433321100    000111111122   233322 334432   345666655545555666566


Q ss_pred             CCCccccccEEEeccccccCCCCCcchhhhhHHHHHHHHHHHHhhccccHHHHHHHHHHhhhhhHHHHHHHHHH
Q 014324          302 PLKQIFWSNVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTVRLPVTSKQVLHSRR  375 (426)
Q Consensus       302 p~~~~~~~rv~LvGDAAh~~~P~~G~G~~~ai~Da~~La~~L~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~  375 (426)
                      ++++|..+||+|||||||.|+|+.|||+|+||+||.+|+++|...  .+.+.+|+.|+++|++++..++..++.
T Consensus       296 ~~~~~~~grv~LvGDAAh~~~P~~GqG~n~ai~Da~~La~~L~~~--~~~~~~L~~Ye~~r~~~~~~~~~~s~~  367 (410)
T 3c96_A          296 PLPHWGRGRITLLGDAAHLMYPMGANGASQAILDGIELAAALARN--ADVAAALREYEEARRPTANKIILANRE  367 (410)
T ss_dssp             CCSCCCBTTEEECTHHHHCCCSSTTCTHHHHHHHHHHHHHHHHHC--SSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccccccCCEEEEecccCCCCCccchhHHHHHHHHHHHHHHHhcc--CCHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            788899999999999999999999999999999999999999875  367899999999999999999988873

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=100.00  E-value=8.1e-41  Score=330.50  Aligned_cols=335  Identities=18%  Similarity=0.157  Sum_probs=224.2

Q ss_pred             CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecc
Q 014324            4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQ   83 (426)
Q Consensus         4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~   83 (426)
                      ..++||+||||||+||++|+.|+++|++|+||||.+.+..   .+++..++++++++|+++|+  .+.+.+. .+...  
T Consensus         9 ~~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~---~~r~~~l~~~~~~~l~~lGl--~~~~~~~-~~~~~--   80 (500)
T 2qa1_A            9 RSDAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVERTG---ESRGLGFTARTMEVFDQRGI--LPRFGEV-ETSTQ--   80 (500)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC-CC---CCCSEEECHHHHHHHHTTTC--GGGGCSC-CBCCE--
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCC---CCCcceECHHHHHHHHHCCC--HHHHHhc-ccccc--
Confidence            3568999999999999999999999999999999988753   45788999999999999988  5555443 21110  


Q ss_pred             ccccccccccccccccCCCc-chhccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEee
Q 014324           84 NQATDNAKVTRTLARDDNFN-FRAAHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKG  160 (426)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~-~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~  160 (426)
                      ..+ .+..+.... .....+ ...++|..+++.|.+.+. .++ |+++++|++++.+++  .|++++.+ .+| ..+++|
T Consensus        81 ~~~-~~~~~~~~~-~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~--~v~v~~~~-~~g-~~~~~a  154 (500)
T 2qa1_A           81 GHF-GGLPIDFGV-LEGAWQAAKTVPQSVTETHLEQWATGLGADIRRGHEVLSLTDDGA--GVTVEVRG-PEG-KHTLRA  154 (500)
T ss_dssp             EEE-TTEEEEGGG-STTGGGCEEEEEHHHHHHHHHHHHHHTTCEEEETCEEEEEEEETT--EEEEEEEE-TTE-EEEEEE
T ss_pred             ccc-cceeccccc-CCCCCCceeecCHHHHHHHHHHHHHHCCCEEECCcEEEEEEEcCC--eEEEEEEc-CCC-CEEEEe
Confidence            001 111111100 011122 356889999999998775 478 999999999997544  57776432 223 346899


Q ss_pred             cEEEeccCCchhhhhhhcCCCcccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEEEecCCee
Q 014324          161 NLLVAADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELLNKRL  240 (426)
Q Consensus       161 d~vI~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (426)
                      |+||+|||.+|.||+++.............+.+.+..+.             .|.   ...+++.++++++++|.+++..
T Consensus       155 ~~vVgADG~~S~VR~~lg~~~~~~~~~~~~~~~~~~~~~-------------~~~---~~~~~~~~~g~~~~~p~~~g~~  218 (500)
T 2qa1_A          155 AYLVGCDGGRSSVRKAAGFDFPGTAATMEMYLADIKGVE-------------LQP---RMIGETLPGGMVMVGPLPGGIT  218 (500)
T ss_dssp             SEEEECCCTTCHHHHHTTCCCCEECCCCEEEEEEEESCC-------------CCC---EEEEEEETTEEEEEEEETTTEE
T ss_pred             CEEEECCCcchHHHHHcCCCcCCCccceEEEEEEEEeCC-------------CCC---ceEEEECCCcEEEEEEcCCCEE
Confidence            999999999999999985444322222333444333321             111   1234566788899999988876


Q ss_pred             eEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcceEe-eeec--cCCCCccccccEEEeccc
Q 014324          241 NWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFIN-AMYD--CDPLKQIFWSNVVLIGDA  317 (426)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~p~~~~~~~rv~LvGDA  317 (426)
                      ++.+........    ......+.+.+.+.+......   .    +..  ....| ..+.  ....++|..+||+|+|||
T Consensus       219 ~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~---~----~~~--~~~~~~~~~~~~~~~a~~~~~grv~L~GDA  285 (500)
T 2qa1_A          219 RIIVCERGTPPQ----RRETPPSWHEVADAWKRLTGD---D----IAH--AEPVWVSAFGNATRQVTEYRRGRVILAGDS  285 (500)
T ss_dssp             EEEEEETTCCC---------CCCHHHHHHHHHHHHSC---C----CTT--SEEEEEEEEECCEEECSCSEETTEEECGGG
T ss_pred             EEEEEcCCCCCc----cccCCCCHHHHHHHHHHhcCC---C----CCc--cceeEEEEeccCcEEccccccCCEEEEEcc
Confidence            666543221110    001112333333333222110   0    000  01111 1111  234567888999999999


Q ss_pred             cccCCCCCcchhhhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhh
Q 014324          318 AHPTTPHGLRSTNMSILDAMVLGKSLEKWG-VEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQ  381 (426)
Q Consensus       318 Ah~~~P~~G~G~~~ai~Da~~La~~L~~~~-~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~  381 (426)
                      ||.|+|+.|||+|+||+||.+|+|+|.... +...+.+|++|+++|+++++.++..++.+..++.
T Consensus       286 AH~~~P~~GqG~n~gi~DA~~La~~La~~~~g~~~~~~L~~Y~~eR~~~~~~~~~~s~~~~~l~~  350 (500)
T 2qa1_A          286 AHIHLPAGGQGMNTSIQDAVNLGWKLGAVVNGTATEELLDSYHSERHAVGKRLLMNTQAQGLLFL  350 (500)
T ss_dssp             TEECCCCSSCHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCCccccchhhhHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999998762 3456899999999999999999999998888876

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=100.00  E-value=6.8e-41  Score=330.95  Aligned_cols=335  Identities=16%  Similarity=0.129  Sum_probs=224.8

Q ss_pred             CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecc
Q 014324            4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQ   83 (426)
Q Consensus         4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~   83 (426)
                      ..++||+||||||+||++|+.|+++|++|+||||.+.+..   .+++..++++++++|+++|+  .+.+.+. .+...  
T Consensus        10 ~~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~---~~r~~~l~~~~~~~l~~lGl--~~~~~~~-~~~~~--   81 (499)
T 2qa2_A           10 RSDASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRTG---ESRGLGFTARTMEVFDQRGI--LPAFGPV-ETSTQ--   81 (499)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSSCCC---CCCSEEECHHHHHHHHHTTC--GGGGCSC-CEESE--
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCC---CCceeEECHHHHHHHHHCCC--HHHHHhc-ccccc--
Confidence            3568999999999999999999999999999999988753   46788999999999999998  5555443 22111  


Q ss_pred             ccccccccccccccccCCCc-chhccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEee
Q 014324           84 NQATDNAKVTRTLARDDNFN-FRAAHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKG  160 (426)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~-~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~  160 (426)
                      ..+ .+..+.... .....+ ...++|..+++.|.+.+. .++ |++++++++++.+++  .|++++.+ .+| ..+++|
T Consensus        82 ~~~-~~~~~~~~~-~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~--~v~v~~~~-~~g-~~~~~a  155 (499)
T 2qa2_A           82 GHF-GGRPVDFGV-LEGAHYGVKAVPQSTTESVLEEWALGRGAELLRGHTVRALTDEGD--HVVVEVEG-PDG-PRSLTT  155 (499)
T ss_dssp             EEE-TTEEEEGGG-STTCCCEEEEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEEECSS--CEEEEEEC-SSC-EEEEEE
T ss_pred             cee-cceeccccc-CCCCCCceEecCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCC--EEEEEEEc-CCC-cEEEEe
Confidence            011 111111100 111222 367899999999998775 378 999999999986544  56666432 223 346899


Q ss_pred             cEEEeccCCchhhhhhhcCCCcccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEEEecCCee
Q 014324          161 NLLVAADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELLNKRL  240 (426)
Q Consensus       161 d~vI~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (426)
                      |+||+|||++|.||+++.............+.+.+..+.             .+.   ...+++.++++++++|.+++..
T Consensus       156 ~~vVgADG~~S~VR~~lg~~~~~~~~~~~~~~~~v~~~~-------------~~~---~~~~~~~~~g~~~~~P~~~g~~  219 (499)
T 2qa2_A          156 RYVVGCDGGRSTVRKAAGFDFPGTSASREMFLADIRGCE-------------ITP---RPIGETVPLGMVMSAPLGDGVD  219 (499)
T ss_dssp             EEEEECCCTTCHHHHHTTCCCCEECCCCCEEEEEEESCC-------------CCC---EEEEEEETTEEEEEEECSSSCE
T ss_pred             CEEEEccCcccHHHHHcCCCCCCCCCccEEEEEEEEECC-------------CCc---ceEEEECCCeEEEEEEcCCCEE
Confidence            999999999999999985444322222233333333321             111   1234566788889999988876


Q ss_pred             eEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcceEe-eeec--cCCCCccccccEEEeccc
Q 014324          241 NWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFIN-AMYD--CDPLKQIFWSNVVLIGDA  317 (426)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~p~~~~~~~rv~LvGDA  317 (426)
                      ++.+........    ......+.+.+.+.+......   .    +..  ....| ..+.  ..+.++|..|||+|+|||
T Consensus       220 ~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~---~----~~~--~~~~~~~~~~~~~~~a~~~~~grv~L~GDA  286 (499)
T 2qa2_A          220 RIIVCERGAPAR----RRTGPPPYQEVAAAWQRLTGQ---D----ISH--GEPVWVSAFGDPARQVSAYRRGRVLLAGDS  286 (499)
T ss_dssp             EEEEEETTCCCC----CCSSSCCHHHHHHHHHHHHSC---C----CTT--CEEEEEEEECCCEEECSCSEETTEEECGGG
T ss_pred             EEEEEecCCCCc----cccCCCCHHHHHHHHHHHhCC---C----CCc--cceeEEEEEeCCcEEcccccCCCEEEEecc
Confidence            666544221110    001112333333333322110   0    000  01111 1111  234567888999999999


Q ss_pred             cccCCCCCcchhhhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhh
Q 014324          318 AHPTTPHGLRSTNMSILDAMVLGKSLEKWG-VEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQ  381 (426)
Q Consensus       318 Ah~~~P~~G~G~~~ai~Da~~La~~L~~~~-~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~  381 (426)
                      ||.|+|+.|||+|+||+||.+|+|+|.... +...+.+|++|+++|+++++.++..++.+..++.
T Consensus       287 AH~~~P~~GqG~n~gi~DA~~La~~La~~l~g~~~~~~L~~Ye~eR~~~~~~~~~~s~~~~~l~~  351 (499)
T 2qa2_A          287 AHVHLPAGGQGMNVSVQDSVNLGWKLAAVVSGRAPAGLLDTYHEERHPVGRRLLMNTQAQGMLFL  351 (499)
T ss_dssp             TEEECCCSSCHHHHHHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCCccccchhhhHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999998763 3456789999999999999999999998888876

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=100.00  E-value=2.8e-41  Score=326.26  Aligned_cols=344  Identities=19%  Similarity=0.165  Sum_probs=232.5

Q ss_pred             CCCCCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCccee
Q 014324            1 MEKKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLT   80 (426)
Q Consensus         1 m~~~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~   80 (426)
                      ||.+.++||+||||||+|+++|+.|+++|++|+||||.+.+.   ..++++.+.+++.++++++|+  .+.+.....+..
T Consensus         1 ~M~~~~~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~~~---~~~~~~~l~~~~~~~l~~~g~--~~~~~~~~~~~~   75 (399)
T 2x3n_A            1 GMTDNHIDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRER---AINGADLLKPAGIRVVEAAGL--LAEVTRRGGRVR   75 (399)
T ss_dssp             ----CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC------CCCCEECHHHHHHHHHTTC--HHHHHHTTCEEE
T ss_pred             CCCCCcCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCC---ccCceeeECchHHHHHHHcCc--HHHHHHhCCCcc
Confidence            566667899999999999999999999999999999997763   256788999999999999987  555554443322


Q ss_pred             ecccccccccccccccccc--CCCcchhccHHHHHHHHHhcCCC--Ce-eEeeeeEEEEEEecCCceE--EEEEEeccCC
Q 014324           81 IDQNQATDNAKVTRTLARD--DNFNFRAAHWADLHGLLYNALPP--EI-FLRGHQYLSFCISEVKTTV--TVKAKVLQTD  153 (426)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~r~~l~~~L~~~~~~--~~-i~~~~~v~~~~~~~~~~~v--~v~~~~~~~g  153 (426)
                      .......++..........  .....+.++|..|.+.|.+.+++  ++ ++++++|++++.+++  .|  +++   +.+|
T Consensus        76 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~--~v~g~v~---~~~g  150 (399)
T 2x3n_A           76 HELEVYHDGELLRYFNYSSVDARGYFILMPCESLRRLVLEKIDGEATVEMLFETRIEAVQRDER--HAIDQVR---LNDG  150 (399)
T ss_dssp             CEEEEEETTEEEEEEETTSSCGGGCEEECCHHHHHHHHHHHHTTCTTEEEECSCCEEEEEECTT--SCEEEEE---ETTS
T ss_pred             eeEEEeCCCCEEEecchHHhcccCccccccHHHHHHHHHHHhhhcCCcEEEcCCEEEEEEEcCC--ceEEEEE---ECCC
Confidence            1111111222111111000  11123568999999999998765  78 999999999986544  45  555   5677


Q ss_pred             ceEEEeecEEEeccCCchhhhhhhcCCCccc--ccce--EEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCC-Cc
Q 014324          154 EVIEIKGNLLVAADGCLSSIRQSFLSDFKLR--YSGY--CAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLAS-GT  228 (426)
Q Consensus       154 ~~~~~~~d~vI~AdG~~S~vR~~l~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  228 (426)
                      ++  +++|+||+|||.+|.+|+.+..+....  +.+.  ..|.+.++.+              .|..   . .++.+ ++
T Consensus       151 ~~--~~ad~vV~AdG~~s~vr~~lg~~~~~~~p~~~~~~~~~~~~~~~~--------------~~~~---~-~~~~~~~~  210 (399)
T 2x3n_A          151 RV--LRPRVVVGADGIASYVRRRLLDIDVERRPYPSPMLVGTFALAPCV--------------AERN---R-LYVDSQGG  210 (399)
T ss_dssp             CE--EEEEEEEECCCTTCHHHHHTSCCCCCCCCCSSCEEEEEEECCHHH--------------HHCE---E-EEECTTSC
T ss_pred             CE--EECCEEEECCCCChHHHHHhCCCccccCCCCCCceEEEEEEecCC--------------CCCc---c-EEEcCCCc
Confidence            64  899999999999999999986554444  5555  5565544321              0111   2 44567 88


Q ss_pred             eEEEEEecCCeeeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHH-HHhhhcC--cceEeeeeccCCCCc
Q 014324          229 HSVFYELLNKRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFV-KVIKETK--EPFINAMYDCDPLKQ  305 (426)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~p~~~  305 (426)
                      +++++|+++....|.+.++....    ..+....+.+.+.+.    ...|.+.+. ..++...  ....+.+....+.++
T Consensus       211 ~~~~~p~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (399)
T 2x3n_A          211 LAYFYPIGFDRARLVVSFPREEA----RELMADTRGESLRRR----LQRFVGDESAEAIAAVTGTSRFKGIPIGYLNLDR  282 (399)
T ss_dssp             EEEEEEETTTEEEEEEECCHHHH----HHHHHSTTSHHHHHH----HHTTCCGGGHHHHHTCCCSTTCEECCCCCEECSC
T ss_pred             EEEEEEcCCCEEEEEEEeCcccc----ccccccCCHHHHHHH----HhhcCCcchhhHHhcCCccceEEechhhcccccc
Confidence            89999998865555443321110    000000122222222    224655552 2233333  234444443345677


Q ss_pred             cccccEEEeccccccCCCCCcchhhhhHHHHHHHHHHHHhhc--cccHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhc
Q 014324          306 IFWSNVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWG--VEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQG  382 (426)
Q Consensus       306 ~~~~rv~LvGDAAh~~~P~~G~G~~~ai~Da~~La~~L~~~~--~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~  382 (426)
                      |..+|++|+|||||.++|+.|||+|+||+||..|+++|....  +.+.+.+|+.|+++|++++..++..++.+.+++..
T Consensus       283 ~~~~rv~lvGDAAh~~~P~~GqG~~~al~da~~La~~L~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~~~~~~  361 (399)
T 2x3n_A          283 YWADNVAMLGDAIHNVHPITGQGMNLAIEDASALADALDLALRDACALEDALAGYQAERFPVNQAIVSYGHALATSLED  361 (399)
T ss_dssp             SEETTEEECGGGTEECCGGGCCHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             cccCcEEEEechhccCCCcccccHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHhccHHHHHHHHHHHhhhhhcc
Confidence            888999999999999999999999999999999999998763  24678999999999999999999999999888753

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=100.00  E-value=1.3e-40  Score=333.12  Aligned_cols=348  Identities=18%  Similarity=0.093  Sum_probs=218.0

Q ss_pred             CCCCCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCccee
Q 014324            1 MEKKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLT   80 (426)
Q Consensus         1 m~~~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~   80 (426)
                      |+.+.++||+||||||+||++|+.|+++|++|+||||.+.+..   .+++..++++++++++++|+  .+.+.+.+.+..
T Consensus        21 M~~~~~~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~~~~---~~~~~~l~~~~~~~l~~lGl--~~~~~~~~~~~~   95 (549)
T 2r0c_A           21 MNAPIETDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGTIT---HPRVGTIGPRSMELFRRWGV--AKQIRTAGWPGD   95 (549)
T ss_dssp             -CCCEEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSCCS---SCCCCEECHHHHHHHHHTTC--HHHHHTSSCCTT
T ss_pred             cCCCCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCC---CCceeeeCHHHHHHHHHcCC--hHHHHhhcCCcc
Confidence            4445568999999999999999999999999999999987643   55778899999999999998  666665554431


Q ss_pred             e----ccccccccccccccccc---------cCCCcchhccHHHHHHHHHhcCCCCeeEeeeeEEEEEEecCCceEEEEE
Q 014324           81 I----DQNQATDNAKVTRTLAR---------DDNFNFRAAHWADLHGLLYNALPPEIFLRGHQYLSFCISEVKTTVTVKA  147 (426)
Q Consensus        81 ~----~~~~~~~~~~~~~~~~~---------~~~~~~~~~~r~~l~~~L~~~~~~~~i~~~~~v~~~~~~~~~~~v~v~~  147 (426)
                      .    .+.....+..+......         ........++|..+++.|.+.+.+. |++++++++++.+++  .|++++
T Consensus        96 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~-v~~~~~v~~~~~~~~--~v~v~~  172 (549)
T 2r0c_A           96 HPLDAAWVTRVGGHEVYRIPLGTADTRATPEHTPEPDAICPQHWLAPLLAEAVGER-LRTRSRLDSFEQRDD--HVRATI  172 (549)
T ss_dssp             SBCCEEEESSBTSCEEEEECCCBTTTSCCCSSCSSCCEECCHHHHHHHHHHHHGGG-EECSEEEEEEEECSS--CEEEEE
T ss_pred             cccceEEeccCCCceeEeecccccccccccCCCCCcccccCHHHHHHHHHHHHHHh-cccCcEEEEEEEeCC--EEEEEE
Confidence            1    11111122211111000         1123446788999999999877655 899999999986443  577765


Q ss_pred             EeccCCceEEEeecEEEeccCCchhhhhhhcCCCcccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCC
Q 014324          148 KVLQTDEVIEIKGNLLVAADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASG  227 (426)
Q Consensus       148 ~~~~~g~~~~~~~d~vI~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (426)
                      .+..+|+..+++||+||+|||.+|.||+++.............+...+..+.  ....   +. ..+   ...++++.++
T Consensus       173 ~~~~~G~~~~i~a~~vVgADG~~S~vR~~lg~~~~g~~~~~~~~~~~~~~~~--~~~~---~~-~~~---~~~~~~~~p~  243 (549)
T 2r0c_A          173 TDLRTGATRAVHARYLVACDGASSPTRKALGIDAPPRHRTQVFRNILFRAPE--LRSL---LG-ERA---ALFFFLMLSS  243 (549)
T ss_dssp             EETTTCCEEEEEEEEEEECCCTTCHHHHHHTCCCCBSSCCEEEEEEEEECTT--HHHH---HG-GGC---CSEEEEEEET
T ss_pred             EECCCCCEEEEEeCEEEECCCCCcHHHHHcCCCCCCCcccceEEEEEEECCc--hHHh---cC-CCC---ceEEEEECCC
Confidence            5444576567999999999999999999985433222111122223333321  1110   00 001   1223344555


Q ss_pred             -ceEEEEEecCCeeeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcceEeeeeccCCCCcc
Q 014324          228 -THSVFYELLNKRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDPLKQI  306 (426)
Q Consensus       228 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  306 (426)
                       ...+++|++++. .|.+++..+..     .    .+.+.+.+.+......   .+.  ++ ......|.+ ...+.++|
T Consensus       244 ~~~~~~~p~~~~~-~~~~~~~~~~~-----~----~~~~~~~~~l~~~~~~---~~~--~~-~~~~~~~~~-~~~~a~~~  306 (549)
T 2r0c_A          244 SLRFPLRALDGRG-LYRLTVGVDDA-----S----KSTMDSFELVRRAVAF---DTE--IE-VLSDSEWHL-THRVADSF  306 (549)
T ss_dssp             TEEEEEEESSSSS-EEEEEEECSTT-----C----CSCCCHHHHHHHHBCS---CCC--CE-EEEEEEEEE-CCEECSCS
T ss_pred             CcEEEEEEECCCc-EEEEEecCCCC-----C----CCHHHHHHHHHHHhCC---CCc--ee-EEEEecchh-HhhhHHhh
Confidence             677888886543 35555532110     0    1122222322222111   000  00 000111222 13456778


Q ss_pred             ccccEEEeccccccCCCCCcchhhhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhc
Q 014324          307 FWSNVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWG-VEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQG  382 (426)
Q Consensus       307 ~~~rv~LvGDAAh~~~P~~G~G~~~ai~Da~~La~~L~~~~-~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~  382 (426)
                      ..|||+|+|||||.++|+.|||+|+||+||.+|+|+|.... +...+.+|++|+++|+++++.+++.+..+..++..
T Consensus       307 ~~grv~L~GDAAH~~~P~~GqG~n~gi~DA~~La~~La~~l~g~a~~~lL~~Y~~eR~~~a~~~~~~s~~~~~~~~~  383 (549)
T 2r0c_A          307 SAGRVFLTGDAAHTLSPSGGFGMNTGIGSAADLGWKLAATLRGWAGPGLLATYEEERRPVAITSLEEANVNLRRTMD  383 (549)
T ss_dssp             EETTEEECGGGTEECCCGGGHHHHHHHHHHHHHHHHHHHHHHTCSCTTTTHHHHHHHHHHHHHHHHC----------
T ss_pred             cCCcEEEEccccccCCCccCCccccccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            88999999999999999999999999999999999998763 23456789999999999999999999988887764

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=100.00  E-value=1.1e-39  Score=326.45  Aligned_cols=348  Identities=16%  Similarity=0.058  Sum_probs=224.9

Q ss_pred             CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeec-
Q 014324            4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTID-   82 (426)
Q Consensus         4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-   82 (426)
                      +.++||+||||||+||++|+.|+++|++|+||||.+.+..   .+++..++++++++|+++|+  .+.+.+.+.+.... 
T Consensus         3 ~~~~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~~~~~---~~~~~~l~~~~~~~l~~lGl--~~~~~~~~~~~~~~~   77 (535)
T 3ihg_A            3 DHEVDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLSP---YPRAAGQNPRTMELLRIGGV--ADEVVRADDIRGTQG   77 (535)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSSSCCC---CCCSCCBCHHHHHHHHHTTC--HHHHHHSCCSSCTTS
T ss_pred             CccCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCC---CCccceECHHHHHHHHHcCC--HHHHHhhCCCccccc
Confidence            3569999999999999999999999999999999988653   45778899999999999998  66666655543221 


Q ss_pred             -----ccccccccccc----ccc------cccCCCcchhccHHHHHHHHHhcCCC-Ce-eEeeeeEEEEEEecCCc--eE
Q 014324           83 -----QNQATDNAKVT----RTL------ARDDNFNFRAAHWADLHGLLYNALPP-EI-FLRGHQYLSFCISEVKT--TV  143 (426)
Q Consensus        83 -----~~~~~~~~~~~----~~~------~~~~~~~~~~~~r~~l~~~L~~~~~~-~~-i~~~~~v~~~~~~~~~~--~v  143 (426)
                           ......+..+.    ...      ..........++|..|++.|.+.+.+ |+ ++++++|++++.++++.  .|
T Consensus        78 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~~~v  157 (535)
T 3ihg_A           78 DFVIRLAESVRGEILRTVSESFDDMVAATEPCTPAGWAMLSQDKLEPILLAQARKHGGAIRFGTRLLSFRQHDDDAGAGV  157 (535)
T ss_dssp             CCEEEEESSSSSCEEEEEESCHHHHHHTTGGGCSCCCBCCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEEECGGGCSEE
T ss_pred             ceeeeEEeccCCceeeeccccccccccccccCCCCcccccCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCccccE
Confidence                 11112222221    000      11123345678999999999987754 78 99999999999754411  56


Q ss_pred             EEEEEeccCCceEEEeecEEEeccCCchhhhhhhcCCCcc-cccc-eEEEEEEeeCCCCCchHHHhhhhcccCCCCceee
Q 014324          144 TVKAKVLQTDEVIEIKGNLLVAADGCLSSIRQSFLSDFKL-RYSG-YCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLY  221 (426)
Q Consensus       144 ~v~~~~~~~g~~~~~~~d~vI~AdG~~S~vR~~l~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (426)
                      ++++.+ .++ ..+++||+||+|||.+|.+|+++...... .+.. ...+.  +..+   .       ....+......+
T Consensus       158 ~v~~~~-~~~-~~~i~a~~vV~AdG~~S~vR~~lgi~~~~~~~~~~~~~~~--~~~~---~-------~~~~~~~~~~~~  223 (535)
T 3ihg_A          158 TARLAG-PDG-EYDLRAGYLVGADGNRSLVRESLGIGRYGHGTLTHMVGVI--FDAD---L-------SGIMEPGTTGWY  223 (535)
T ss_dssp             EEEEEE-TTE-EEEEEEEEEEECCCTTCHHHHHTTCCEEEEEEEEEEEEEE--EECC---G-------GGTSCTTCCEEE
T ss_pred             EEEEEc-CCC-eEEEEeCEEEECCCCcchHHHHcCCCcCCCCccceEEEEE--Eecc---C-------hhhccCCceEEE
Confidence            666432 222 35699999999999999999998432211 1111 11111  1111   0       000111122334


Q ss_pred             EecCCCceEEEEEecC-CeeeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcceEeeeecc
Q 014324          222 FDLASGTHSVFYELLN-KRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDC  300 (426)
Q Consensus       222 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (426)
                      +...++...+++|+++ +...+.+.+..+...    . ....+.+.+.+.+..........+    + ......|.. ..
T Consensus       224 ~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~----~-~~~~~~e~~~~~l~~~~~~~~~~~----~-~~~~~~~~~-~~  292 (535)
T 3ihg_A          224 YLHHPEFKGTFGPTDRPDRHTLFVEYDPDEGE----R-PEDFTPQRCVELIGLALDAPEVKP----E-LVDIQGWEM-AA  292 (535)
T ss_dssp             EEECSSCEEEEEECSSTTEEEEEEEECTTTTC----C-GGGCCHHHHHHHHHHHHTCSSCCC----E-EEEEEEEEE-EE
T ss_pred             EEECCCceEEEEEecCCCEEEEEEeeCccccC----c-cccCCHHHHHHHHHHHhCCCCCce----e-EEEeeEeee-eE
Confidence            4456777888888876 444444443322111    0 111233333333322211100000    0 000112222 13


Q ss_pred             CCCCccccccEEEeccccccCCCCCcchhhhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHhhhhhHHHHHHHHHHhhhh
Q 014324          301 DPLKQIFWSNVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWG-VEGLLSALEEYQTVRLPVTSKQVLHSRRLGRI  379 (426)
Q Consensus       301 ~p~~~~~~~rv~LvGDAAh~~~P~~G~G~~~ai~Da~~La~~L~~~~-~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~  379 (426)
                      ...++|..+||+|+|||||.++|+.|||+|+||+||.+|+|+|.... +...+.+|++|+++|+++++.+++.+.++.+.
T Consensus       293 ~~a~~~~~grv~LvGDAAH~~~P~~GqG~n~ai~DA~~La~~La~~l~g~~~~~lL~~Ye~eR~p~a~~~~~~s~~~~~~  372 (535)
T 3ihg_A          293 RIAERWREGRVFLAGDAAKVTPPTGGMSGNAAVADGFDLAWKLAAVLQGQAGAGLLDTYEDERKVAAELVVAEALAIYAQ  372 (535)
T ss_dssp             EEESCSEETTEEECTTTTEECCSTTSCHHHHHHHHHHHHHHHHHHHHTTSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEECccccCCEEEEecccccCCCccCCccccccccHHHHHHHHHHHhcCCCcHHHHHhhHHHHHHHHHHHHHHHHHhhHh
Confidence            34567888999999999999999999999999999999999998862 34567889999999999999999999988766


Q ss_pred             hh
Q 014324          380 KQ  381 (426)
Q Consensus       380 ~~  381 (426)
                      +.
T Consensus       373 ~~  374 (535)
T 3ihg_A          373 RM  374 (535)
T ss_dssp             HT
T ss_pred             hc
Confidence            53

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=100.00  E-value=3e-40  Score=335.88  Aligned_cols=384  Identities=15%  Similarity=0.173  Sum_probs=231.8

Q ss_pred             CCccEEEEcCChHHHHHHHHHHH-cCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecc
Q 014324            5 EKGKAVIVGGSIAGISCAHALLR-AGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQ   83 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~-~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~   83 (426)
                      .++||+||||||+||++|+.|++ +|++|+||||.+.+..   .++++.++++++++|+++|+  .+.+.+.+.+.....
T Consensus        31 ~~~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~~~~---~g~a~~l~~~t~e~l~~lGl--~~~~~~~~~~~~~~~  105 (639)
T 2dkh_A           31 SQVDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGPME---LGQADGIACRTMEMFEAFEF--ADSILKEACWINDVT  105 (639)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSSCCS---SCSCCEECHHHHHHHHHTTC--HHHHHHHSEEECEEE
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCCCCC---CCceeeeCHHHHHHHHHcCc--HHHHHHhcccccceE
Confidence            35799999999999999999999 9999999999987653   56788999999999999988  555554443322111


Q ss_pred             cccc----cccccc--cc---ccccCCCcchhccHHHHHHHHHhcCCC---Ce-eEeeeeEEEEEEecC--CceEEEEEE
Q 014324           84 NQAT----DNAKVT--RT---LARDDNFNFRAAHWADLHGLLYNALPP---EI-FLRGHQYLSFCISEV--KTTVTVKAK  148 (426)
Q Consensus        84 ~~~~----~~~~~~--~~---~~~~~~~~~~~~~r~~l~~~L~~~~~~---~~-i~~~~~v~~~~~~~~--~~~v~v~~~  148 (426)
                      .+..    .+....  ..   .......+...++|..+++.|.+.+.+   ++ |+++++|++++.+++  ...|+++++
T Consensus       106 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~a~~~g~~v~v~~~~~v~~l~~~~~~~~~~v~v~~~  185 (639)
T 2dkh_A          106 FWKPDPGQPGRIARHGRVQDTEDGLSEFPHVILNQARVHDHYLERMRNSPSRLEPHYARRVLDVKVDHGAADYPVTVTLE  185 (639)
T ss_dssp             EEEECTTSTTCEEEEEEEESSCTTSCSSCEEECCHHHHHHHHHHHHHHSTTCCCCBCSEEEEEEEECTTCSSCCEEEEEE
T ss_pred             EECCCCCCCcceEeecccCcccCCCCCCceEeeCHHHHHHHHHHHHHhCCCCcEEecCCEEEEEEECCCCCcCCEEEEEE
Confidence            1111    121100  00   001122344578999999999987653   34 899999999997653  235777754


Q ss_pred             ec---cCCceEEEeecEEEeccCCchhhhhhhcCCCcccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecC
Q 014324          149 VL---QTDEVIEIKGNLLVAADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLA  225 (426)
Q Consensus       149 ~~---~~g~~~~~~~d~vI~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (426)
                      +.   .+|+..+++||+||+|||++|.||+++.......... ..| ++++....          ..+|.......+.. 
T Consensus       186 ~~~~~~~G~~~~i~a~~vVgADG~~S~vR~~lg~~~~g~~~~-~~~-~~~~~~~~----------~~~p~~~~~~~~~~-  252 (639)
T 2dkh_A          186 RCDAAHAGQIETVQARYVVGCDGARSNVRRAIGRQLVGDSAN-QAW-GVMDVLAV----------TDFPDVRYKVAIQS-  252 (639)
T ss_dssp             ECSGGGTTCEEEEEEEEEEECCCTTCHHHHHTTCCCEECSCS-CCE-EEEEEEEE----------ECCTTTTSEEEEEE-
T ss_pred             eccccCCCCeEEEEeCEEEECCCcchHHHHHhCCCCCCCCcc-ceE-EEEEEEEc----------cCCCccceeEEEEc-
Confidence            31   3576667999999999999999999985443222111 112 33322110          01222111222233 


Q ss_pred             CCceEEEEEecCC-eeeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcceEeeeec--cCC
Q 014324          226 SGTHSVFYELLNK-RLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYD--CDP  302 (426)
Q Consensus       226 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p  302 (426)
                      ++++++++|.+++ ..++.+.+......  ........+.+.+.+........+.      +. ......+..+.  ...
T Consensus       253 ~~g~~~~~P~~~~~~~r~~~~~~~~~~~--~~~~~~~~~~e~~~~~~~~~~~~~~------~~-~~~~~~~~~~~~~~~~  323 (639)
T 2dkh_A          253 EQGNVLIIPREGGHLVRFYVEMDKLDAD--ERVASRNITVEQLIATAQRVLHPYK------LE-VKNVPWWSVYEIGQRI  323 (639)
T ss_dssp             TTEEEEEEECTTSSCEEEEEECC-------------CCCHHHHHHHHHHHHTTSC------EE-EEEEEEEEEECCCCEE
T ss_pred             CCceEEEEEcCCCcEEEEEEECCCcCcc--cccccCCCCHHHHHHHHHHHhCccc------Cc-ceeeeEEEecccccch
Confidence            6778889998877 55555443321010  0000111233333222221111110      00 01111222222  223


Q ss_pred             CCccc------------cccEEEeccccccCCCCCcchhhhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHhhhhhHHHH
Q 014324          303 LKQIF------------WSNVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWG-VEGLLSALEEYQTVRLPVTSKQ  369 (426)
Q Consensus       303 ~~~~~------------~~rv~LvGDAAh~~~P~~G~G~~~ai~Da~~La~~L~~~~-~~~~~~~L~~Y~~~R~~~~~~~  369 (426)
                      .++|.            .+||+|+|||||.++|++|||+|+||+||.+|+|+|.... +...+.+|++|+++|+++++.+
T Consensus       324 a~~~~~~~~~~~~~~~~~gRV~L~GDAAH~~~P~~GqG~n~ai~DA~nLawkLa~vl~g~a~~~lL~~Ye~eR~~~a~~~  403 (639)
T 2dkh_A          324 CAKYDDVVDAVATPDSPLPRVFIAGDACHTHSPKAGQGMNFSMQDSFNLGWKLAAVLRKQCAPELLHTYSSERQVVAQQL  403 (639)
T ss_dssp             CSCSBSCCCSSCCTTSCCCCEEECGGGTEECCGGGCCTTHHHHHHHHHHHHHHHHHHTTSBCGGGGHHHHHHHHHHHHHH
T ss_pred             hhhhhccccccccccCccCcEEEEecccccCCCcccccchhhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH
Confidence            45566            7999999999999999999999999999999999998762 3455788999999999999999


Q ss_pred             HHHHHHhhhhhhcCCCCCCCCCCCCCCChhhhHHHhhccCCcccCCCccc
Q 014324          370 VLHSRRLGRIKQGLALPDREPFNTKTASPQDCQELQQKTMPFFADLPSLV  419 (426)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (426)
                      ++.++.+.++++.......  ..  ......+.+.+.+...|++|++..+
T Consensus       404 ~~~s~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~g~~~~Y  449 (639)
T 2dkh_A          404 IDFDREWAKMFSDPAKEGG--QG--GVDPKEFQKYFEQHGRFTAGVGTHY  449 (639)
T ss_dssp             HHHHHHSCC------------------CHHHHHHHHHHHHHHHTTCCCCC
T ss_pred             HHHHHHHHHHhcCCCcccc--cc--cccHHHHHHHHHHhccccccCCccc
Confidence            9999999988875421110  00  1123344444444444566655544

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=100.00  E-value=4.5e-40  Score=315.49  Aligned_cols=326  Identities=21%  Similarity=0.242  Sum_probs=228.0

Q ss_pred             CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecc
Q 014324            4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQ   83 (426)
Q Consensus         4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~   83 (426)
                      |..+||+||||||+|+++|+.|+++|++|+||||.+.+..   .++++.+.++++++|+++|+  .+.+...+.+.....
T Consensus         9 m~~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~---~~~~~~l~~~~~~~l~~~g~--~~~~~~~~~~~~~~~   83 (379)
T 3alj_A            9 GKTRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRA---FGAGIYLWHNGLRVLEGLGA--LDDVLQGSHTPPTYE   83 (379)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSCCC---CSSEEEEEHHHHHHHHHTTC--HHHHHTTCBCCSCEE
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCC---CCceEEeCccHHHHHHHcCC--HHHHHhhCCCccceE
Confidence            4568999999999999999999999999999999988753   56789999999999999987  555555444322111


Q ss_pred             ccccccccccccccccCCCcchhccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeec
Q 014324           84 NQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGN  161 (426)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d  161 (426)
                      .... +..+......  ..+...++|..+.+.|.+.+. .|+ ++++++|++++.  ++   +|+   +.+|++  ++||
T Consensus        84 ~~~~-g~~~~~~~~~--~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~--~~---~v~---~~~g~~--~~ad  150 (379)
T 3alj_A           84 TWMH-NKSVSKETFN--GLPWRIMTRSHLHDALVNRARALGVDISVNSEAVAADP--VG---RLT---LQTGEV--LEAD  150 (379)
T ss_dssp             EEET-TEEEEEECGG--GCCEEEEEHHHHHHHHHHHHHHTTCEEESSCCEEEEET--TT---EEE---ETTSCE--EECS
T ss_pred             EEeC-CceeeeccCC--CCceEEECHHHHHHHHHHHHHhcCCEEEeCCEEEEEEe--CC---EEE---ECCCCE--EEcC
Confidence            1111 2221111100  234677899999999988775 478 999999999984  33   444   567764  8999


Q ss_pred             EEEeccCCchhhhhhhcCCCcccccceEEEEEEeeCC----CCCchHHHhhhhcccCCCCceeeE--ecCCCceEEEEEe
Q 014324          162 LLVAADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFS----GIEDSEIIKGMRRVYPDLGKCLYF--DLASGTHSVFYEL  235 (426)
Q Consensus       162 ~vI~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  235 (426)
                      +||+|||.+|.+|+++.....+.+.++..|++.++..    +...           +  ......  +++++++++++|+
T Consensus       151 ~vV~AdG~~s~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~--~~~~~~~~~~~~~~~~~~~p~  217 (379)
T 3alj_A          151 LIVGADGVGSKVRDSIGFKQDRWVSKDGLIRLIVPRMKKELGHGE-----------W--DNTIDMWNFWPRVQRILYSPC  217 (379)
T ss_dssp             EEEECCCTTCHHHHHHCCCEEEEEEEEEEEEEEEECCHHHHCSSC-----------T--TSEEEEECCSSSCCEEEEEEC
T ss_pred             EEEECCCccHHHHHHhcCCCCcCcCCcEEEEEEechhhccCCcCC-----------c--ccccccceEECCCCEEEEEEC
Confidence            9999999999999998764455677777788877653    1110           1  001111  4567888999999


Q ss_pred             cCCeeeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHH---HHhhhc--CcceEeeeeccCCCCcccccc
Q 014324          236 LNKRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFV---KVIKET--KEPFINAMYDCDPLKQIFWSN  310 (426)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~p~~~~~~~r  310 (426)
                      +++...|.+......+   .       . +.+.+.+.    .|.+.+.   +++...  .....+.++...++++|..+|
T Consensus       218 ~~~~~~~~~~~~~~~~---~-------~-~~l~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~r  282 (379)
T 3alj_A          218 NENELYLGLMAPAADP---R-------G-SSVPIDLE----VWVEMFPFLEPCLIEAAKLKTARYDKYETTKLDSWTRGK  282 (379)
T ss_dssp             SSSEEEEEEEECTTCT---T-------T-TCSSCCHH----HHHHHCGGGHHHHHHHHTCTTCCEEEEEEEEESCSEETT
T ss_pred             CCCcEEEEEEecCCCC---C-------H-HHHHHHHh----cCCchhccHHHHHhhCCccceEEecccccCCCCCcccCc
Confidence            9988777666543110   0       0 11111111    1212111   333322  123344444444567788999


Q ss_pred             EEEeccccccCCCCCcchhhhhHHHHHHHHHHHHhhccccHHHHHHHHHHhhhhhHHHHHHHHHHhh
Q 014324          311 VVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTVRLPVTSKQVLHSRRLG  377 (426)
Q Consensus       311 v~LvGDAAh~~~P~~G~G~~~ai~Da~~La~~L~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~  377 (426)
                      ++|||||||.++|+.|||+|+||+||.+|+++|...  .+.+.+|+.|+++|++++..+++.+.+..
T Consensus       283 v~lvGDAAh~~~P~~GqG~~~ai~da~~La~~L~~~--~~~~~~l~~Y~~~r~~~~~~~~~~s~~~~  347 (379)
T 3alj_A          283 VALVGDAAHAMCPALAQGAGCAMVNAFSLSQDLEEG--SSVEDALVAWETRIRPITDRCQALSGDYA  347 (379)
T ss_dssp             EEECTHHHHCCCGGGSCHHHHHHHHHHHHHHHTTSS--SCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEcccCCCCcchhhhHHHHHHHHHHHHHHhccc--cCHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            999999999999999999999999999999999864  36688999999999999999999885443

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=100.00  E-value=5e-40  Score=328.88  Aligned_cols=339  Identities=18%  Similarity=0.116  Sum_probs=219.6

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccc
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQN   84 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~   84 (426)
                      .++||+||||||+||++|+.|+++|++|+||||.+.+..   .++++.++++++++|+++|+  .+.+........... 
T Consensus        48 ~~~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~~~~---~~r~~~l~~~s~~~l~~lGl--~~~l~~~~~~~~~~~-  121 (570)
T 3fmw_A           48 LTTDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVEPVG---HDRAGALHIRTVETLDLRGL--LDRFLEGTQVAKGLP-  121 (570)
T ss_dssp             ---CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSSCCC---SSSCCCBCHHHHHHHHTTTC--HHHHTTSCCBCSBCC-
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCC---CceEEEECHHHHHHHHHcCC--hHHHHhcCcccCCce-
Confidence            357999999999999999999999999999999988753   56788999999999999988  666665554432110 


Q ss_pred             cccccc---cccccccccCCCcchhccHHHHHHHHHhcCCC-Ce-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEe
Q 014324           85 QATDNA---KVTRTLARDDNFNFRAAHWADLHGLLYNALPP-EI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIK  159 (426)
Q Consensus        85 ~~~~~~---~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~-~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~  159 (426)
                        ..+.   .+............+.++|..+++.|.+.+.+ |+ |+++++|++++.++  ..|+|+++ ..+|+ .+++
T Consensus       122 --~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~--~~v~v~~~-~~~G~-~~~~  195 (570)
T 3fmw_A          122 --FAGIFTQGLDFGLVDTRHPYTGLVPQSRTEALLAEHAREAGAEIPRGHEVTRLRQDA--EAVEVTVA-GPSGP-YPVR  195 (570)
T ss_dssp             --BTTBCTTCCBGGGSCCSCCSBBCCCHHHHHHHHHHHHHHHTEECCBSCEEEECCBCS--SCEEEEEE-ETTEE-EEEE
T ss_pred             --eCCcccccccccccCCCCCeeEEeCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC--CeEEEEEE-eCCCc-EEEE
Confidence              1111   11111111111234568999999999987764 88 99999999998543  45666532 25663 3589


Q ss_pred             ecEEEeccCCchhhhhhhcCCCcccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEE-EEecCC
Q 014324          160 GNLLVAADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVF-YELLNK  238 (426)
Q Consensus       160 ~d~vI~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  238 (426)
                      ||+||+|||.+|.||+++..+..........+...+..+...              .  ...+...+.+++++ +|++++
T Consensus       196 a~~vV~ADG~~S~vR~~lGi~~~~~~~~~~~~~~~v~~~~~~--------------~--~~~~~~~~~G~~~~~~P~~~g  259 (570)
T 3fmw_A          196 ARYGVGCDGGRSTVRRLAADRFPGTEATVRALIGYVTTPERE--------------V--PRRWERTPDGILVLAFPPEGG  259 (570)
T ss_dssp             ESEEEECSCSSCHHHHHTTCCCCCCCCCEEEEEEECCCCSCS--------------S--CCCCCCCCSSCEEECCCC---
T ss_pred             eCEEEEcCCCCchHHHHcCCCCccceeeeEEEEEEEEecCCC--------------c--ceEEEecCCEEEEEEeecCCC
Confidence            999999999999999998544433222233333333322110              0  01112345556666 788887


Q ss_pred             ee-eEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcceEeeee--ccCCCCccccccEEEec
Q 014324          239 RL-NWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMY--DCDPLKQIFWSNVVLIG  315 (426)
Q Consensus       239 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~~~~~~rv~LvG  315 (426)
                      .. +++++........    .....+.+.+.+.+   ...+...    +...........+  ...+.++|..+||+|+|
T Consensus       260 ~~~~i~~~~~~~~~~~----~~~~~~~~~~~~~l---~~~~~~~----~~~~~~~~~~~~~~~~~~~a~~~~~grv~LvG  328 (570)
T 3fmw_A          260 LGPGWSSSSTGHSPAA----DEGPVTLEDLGAAV---ARVRGTP----LTLTEPVSWLSRFGDASRQAKRYRSGRVLLAG  328 (570)
T ss_dssp             ---CEEEEEESCC---------CCCCHHHHHHHT---TSSSSCC----CCCCSCCEEEEEECCCCEECSCSEETTEEECG
T ss_pred             eEEEEEEEeCCCCccc----cccCCCHHHHHHHH---HHHhhcc----cccceeeeeeEEeecccccccccccCCEEEEE
Confidence            76 7777665322110    01112232222221   1111111    1111111011111  13345678889999999


Q ss_pred             cccccCCCCCcchhhhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhc
Q 014324          316 DAAHPTTPHGLRSTNMSILDAMVLGKSLEKWG-VEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQG  382 (426)
Q Consensus       316 DAAh~~~P~~G~G~~~ai~Da~~La~~L~~~~-~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~  382 (426)
                      ||||.++|+.|||+|+||+||.+|+|+|.... +...+.+|+.|+++|++++..++..+..+.++|..
T Consensus       329 DAAH~~~P~~GqG~n~gl~DA~~La~~La~~~~g~~~~~lL~~Ye~eR~~~~~~~~~~s~~~~~l~~~  396 (570)
T 3fmw_A          329 DAAHVHFPIGGQGLNTGLQDAVNLGWKLAARVRGWGSEELLDTYHDERHPVAERVLLNTRAQLALMRP  396 (570)
T ss_dssp             GGTEECCCCSSCHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred             ecceecCCCcCcCHhHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999998762 34678999999999999999999999999888865

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=100.00  E-value=2.7e-39  Score=311.82  Aligned_cols=343  Identities=16%  Similarity=0.118  Sum_probs=214.5

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ   85 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   85 (426)
                      ++||+||||||+|+++|+.|+++|++|+||||.+.+......+.+ .+.++++++|+++|+  .+.+.+...+... ...
T Consensus         2 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g-~l~~~~~~~l~~lg~--~~~~~~~~~~~~~-~~~   77 (394)
T 1k0i_A            2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAG-VLEQGMVDLLREAGV--DRRMARDGLVHEG-VEI   77 (394)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCC-EECHHHHHHHHHTTC--CHHHHHHCEEESC-EEE
T ss_pred             CccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCcccCCCceE-eECHHHHHHHHHcCC--cHHHHhcCCccce-EEE
Confidence            379999999999999999999999999999998753100112233 489999999999998  5555544433211 111


Q ss_pred             cccccccccccc-ccCCCcchhccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecE
Q 014324           86 ATDNAKVTRTLA-RDDNFNFRAAHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNL  162 (426)
Q Consensus        86 ~~~~~~~~~~~~-~~~~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~  162 (426)
                      ...+........ .........+++..+.+.|.+.+. .++ ++++++|++++.++ +..+.|++.  .+|+..+++||+
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~i~~~~~v~~i~~~~-~~~~~v~~~--~~g~~~~~~a~~  154 (394)
T 1k0i_A           78 AFAGQRRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQ-GERPYVTFE--RDGERLRLDCDY  154 (394)
T ss_dssp             EETTEEEEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTT-SSSCEEEEE--ETTEEEEEECSE
T ss_pred             EECCceEEeccccccCCCceEEechHHHHHHHHHHHHhcCCeEEeceeEEEEEEec-CCceEEEEe--cCCcEEEEEeCE
Confidence            111111000000 001223445677888888877654 477 99999999998532 234555531  477755699999


Q ss_pred             EEeccCCchhhhhhhcCCCcccccce--EEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEEEecCCee
Q 014324          163 LVAADGCLSSIRQSFLSDFKLRYSGY--CAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELLNKRL  240 (426)
Q Consensus       163 vI~AdG~~S~vR~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (426)
                      ||+|||.+|.+|+++.....+.+.+.  ..|.+++...+..              ... ..+...++++.++.+..++..
T Consensus       155 vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~-~~~~~~~~g~~~~~~~~~~~~  219 (394)
T 1k0i_A          155 IAGCDGFHGISRQSIPAERLKVFERVYPFGWLGLLADTPPV--------------SHE-LIYANHPRGFALCSQRSATRS  219 (394)
T ss_dssp             EEECCCTTCSTGGGSCGGGCEEEEEEEEEEEEEEEESSCCS--------------CSS-CEEECCTTCCEEEEEEETTEE
T ss_pred             EEECCCCCcHHHHhcCccccccccccccceeEEEecCCCCC--------------ccc-eEEEEcCCceEEEEecCCCcE
Confidence            99999999999999854333334333  3455544321111              011 122334556666666566666


Q ss_pred             eEEEEEecCCCCcCCCcceeccCHH-HHHHHHHHHhhcccHHHHHHhhhcCcc--eEeeeeccCCCCccccccEEEeccc
Q 014324          241 NWVWYINQPEPIMKGNSVTMRVSND-MIKNMHEEAEKVWLPEFVKVIKETKEP--FINAMYDCDPLKQIFWSNVVLIGDA  317 (426)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~p~~~~~~~rv~LvGDA  317 (426)
                      +|.+.......       ....+.+ ..+++.    +.+.+.....+......  ...+.. ....++|..+|++|+|||
T Consensus       220 ~~~~~~~~~~~-------~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~grv~LvGDA  287 (394)
T 1k0i_A          220 QYYVQVPLSEK-------VEDWSDERFWTELK----ARLPSEVAEKLVTGPSLEKSIAPLR-SFVVEPMQHGRLFLAGDA  287 (394)
T ss_dssp             EEEEEECTTCC-------GGGCCHHHHHHHHH----HTSCHHHHHHCCCCCEEEEEEEEEE-EEEEECSEETTEEECGGG
T ss_pred             EEEEEeCCCCC-------ccccCHHHHHHHHH----HhhCcccccccccCcceeeEEEEhh-hhhccccccCCEEEEech
Confidence            66655432211       0111222 222222    22333332222111110  111111 122445778999999999


Q ss_pred             cccCCCCCcchhhhhHHHHHHHHHHHHhhccccHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhc
Q 014324          318 AHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQG  382 (426)
Q Consensus       318 Ah~~~P~~G~G~~~ai~Da~~La~~L~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~  382 (426)
                      ||.++|+.|||+|+||+||.+|+++|......+.+.+|+.|+++|++++..+++.+..+..+++.
T Consensus       288 Ah~~~P~~GqG~~~ai~da~~La~~L~~~~~~~~~~~L~~Y~~~r~~~~~~~~~~s~~~~~~~~~  352 (394)
T 1k0i_A          288 AHIVPPTGAKGLNLAASDVSTLYRLLLKAYREGRGELLERYSAICLRRIWKAERFSWWMTSVLHR  352 (394)
T ss_dssp             TEECCGGGTCHHHHHHHHHHHHHHHHHHHHHHCCGGGGGGHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             hhcCCCcccchHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999876322346789999999999999999999988888763

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=100.00  E-value=7.4e-38  Score=301.68  Aligned_cols=338  Identities=13%  Similarity=0.050  Sum_probs=205.9

Q ss_pred             CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecc
Q 014324            4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQ   83 (426)
Q Consensus         4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~   83 (426)
                      |++|||+|||||||||++|+.|+++|++|+||||++.++....+|  ..++++   +++.+++.......  ........
T Consensus         2 Me~yDViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~~~~~~~~g--~~l~~~---~l~~l~~~~~~~~~--~~~~~~~~   74 (397)
T 3oz2_A            2 METYDVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEIGSPVRCG--EGLSKG---ILNEADIKADRSFI--ANEVKGAR   74 (397)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSTTCSCCSC--CEEETH---HHHHTTCCCCTTTE--EEEESEEE
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCcee--cccCHH---HHHHcCCCchhhhh--hcccceEE
Confidence            677999999999999999999999999999999998876433334  345554   56666652111111  11111000


Q ss_pred             ccccccc-cccccccccCCCcchhccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEee
Q 014324           84 NQATDNA-KVTRTLARDDNFNFRAAHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKG  160 (426)
Q Consensus        84 ~~~~~~~-~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~  160 (426)
                      ....++. ..............+.++|..+++.|.+.+. .|+ ++++++++++..+++. .+.+..  ..+++..+++|
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~i~R~~~~~~L~~~a~~~G~~~~~~~~v~~~~~~~~~-~~~v~~--~~~~~~~~~~a  151 (397)
T 3oz2_A           75 IYGPSEKRPIILQSEKAGNEVGYVLERDKFDKHLAALAAKAGADVWVKSPALGVIKENGK-VAGAKI--RHNNEIVDVRA  151 (397)
T ss_dssp             EECTTCSSCEEEECSSSSCCCEEEECHHHHHHHHHHHHHHHTCEEESSCCEEEEEEETTE-EEEEEE--EETTEEEEEEE
T ss_pred             EEeCCCceEeeccccccCCceeEEEEHHHHHHHHHHHHHhcCcEEeeeeeeeeeeeccce-eeeeee--cccccceEEEE
Confidence            1111111 1111111112233467899999999988765 488 9999999998865432 222322  34566667999


Q ss_pred             cEEEeccCCchhhhhhhcCCCc-ccccceEEEEEE-eeCCCCCchHHHhhhhcccCCCCceeeEe---cCCCceEEEEEe
Q 014324          161 NLLVAADGCLSSIRQSFLSDFK-LRYSGYCAWRGV-LDFSGIEDSEIIKGMRRVYPDLGKCLYFD---LASGTHSVFYEL  235 (426)
Q Consensus       161 d~vI~AdG~~S~vR~~l~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~  235 (426)
                      |+||+|||.+|.+|+++..... ..+.....+... ......+            +   ....++   ..++++.+++|.
T Consensus       152 ~~vIgAdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~~~~~~------------~---~~~~~~~~~~~~~g~~~~~~~  216 (397)
T 3oz2_A          152 KMVIAADGFESEFGRWAGLKSVILARNDIISALQYRMINVDVD------------P---DYTDFYLGSIAPAGYIWVFPK  216 (397)
T ss_dssp             EEEEECCCTTCHHHHHHTCGGGCCCGGGEEEEEEEEEESCCCC------------T---TEEEEECSTTSTTEEEEEEEE
T ss_pred             eEEEeCCccccHHHHHcCCCcccccceeeeeeEEEEeeccccC------------c---ccceeeeeccCCCceEEEeec
Confidence            9999999999999999853322 122222222111 1111100            1   111122   356788899999


Q ss_pred             cCCeeeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcce-EeeeeccCCCCccccccEEEe
Q 014324          236 LNKRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPF-INAMYDCDPLKQIFWSNVVLI  314 (426)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~rv~Lv  314 (426)
                      +++..++.+....+...          ....+++++...... .|.+..   ...... ...+....+..++..+|++|+
T Consensus       217 ~~~~~~vg~~~~~~~~~----------~~~~~~~~l~~~~~~-~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~v~lv  282 (397)
T 3oz2_A          217 GEGMANVGIGSSINWIH----------NRFELKNYLDRFIEN-HPGLKK---GQDIQLVTGGVSVSKVKMPITMPGLMLV  282 (397)
T ss_dssp             ETTEEEEEEEEETTTSC----------SHHHHHHHHHHHHHT-CHHHHT---SEEEEEEEEEEECCCCCSCCEETTEEEC
T ss_pred             ccceeEEEEeeccchhh----------hhhhHHHHHHHHHHh-Cccccc---cceeeeeeccccccCcccceeeeeEEEc
Confidence            88887777655433221          223333333332221 222221   111111 111211233345677999999


Q ss_pred             ccccccCCCCCcchhhhhHHHHHHHHHHHHhhc--cccHHHHHHHHHHhhhhhHHHHHHHHHHhhhhh
Q 014324          315 GDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWG--VEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIK  380 (426)
Q Consensus       315 GDAAh~~~P~~G~G~~~ai~Da~~La~~L~~~~--~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~  380 (426)
                      |||||.++|+.|||+|+||+||..||+.|.++.  ++..+++|+.|++.++++..+.........+.+
T Consensus       283 GDAA~~~~P~~G~Gi~~A~~~g~~~A~~i~~~l~~~~~~~~~L~~Ye~~~~~~~~~~~~~~~~~~~~~  350 (397)
T 3oz2_A          283 GDAARLIDPITGGGIANAIVSGMYAAQVTKEAIESNDYSPQMMQKYEKLIKERFERKHLRNWVAKEKL  350 (397)
T ss_dssp             GGGGTCSCTTTCCCHHHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccCCCCcchhHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999998762  355689999999999888765544444443333

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=100.00  E-value=2.3e-36  Score=300.34  Aligned_cols=348  Identities=12%  Similarity=0.071  Sum_probs=228.0

Q ss_pred             CCCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHH-HHHHHhcCCchhhhccCcceee
Q 014324            3 KKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQR-IIQSWLNGRPHLLHLATVPLTI   81 (426)
Q Consensus         3 ~~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~-~l~~~~~~~~~~~~~~~~~~~~   81 (426)
                      .+.++||+||||||+|+++|+.|+++|++|+||||.+.+.    .+.+..+.+.... +++.+|+  .+.+.........
T Consensus         4 ~~~~~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~~~~----~~~g~~~~~~~~~~~l~~lgl--~~~~~~~~~~~~~   77 (512)
T 3e1t_A            4 RPEVFDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAFPR----HQIGESLLPATVHGICAMLGL--TDEMKRAGFPIKR   77 (512)
T ss_dssp             -CEEEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSC----CCSCCBCCHHHHTTHHHHTTC--HHHHHTTTCCEEC
T ss_pred             CCccCCEEEECcCHHHHHHHHHHHhCCCCEEEEccCCCCC----CCCCcccCcchHHHHHHHhCc--HHHHHHcCCcccc
Confidence            3456899999999999999999999999999999998654    2345667777665 8888887  5555555443321


Q ss_pred             ccc--cccccccc--ccccc-ccCCCcchhccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCc-eEEEEEEeccCC
Q 014324           82 DQN--QATDNAKV--TRTLA-RDDNFNFRAAHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKT-TVTVKAKVLQTD  153 (426)
Q Consensus        82 ~~~--~~~~~~~~--~~~~~-~~~~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~-~v~v~~~~~~~g  153 (426)
                      ...  +.......  ..... .......+.++|..+.+.|.+.+. .|+ ++++++|+++..+++.. .|+++   ..+|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~~~~V~~v~~~~~~v~gv~~~---~~dG  154 (512)
T 3e1t_A           78 GGTFRWGKEPEPWTFGFTRHPDDPYGFAYQVERARFDDMLLRNSERKGVDVRERHEVIDVLFEGERAVGVRYR---NTEG  154 (512)
T ss_dssp             EEEEECSSCSSCEEEESSSSSSSTTCCEEBCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEEETTEEEEEEEE---CSSS
T ss_pred             CceEEecCCccccccccccCCCCCcceeeEecHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEECCEEEEEEEE---eCCC
Confidence            111  11111100  00000 111223456899999999988775 488 99999999999743321 23333   5678


Q ss_pred             ceEEEeecEEEeccCCchhhhhhhcCCCcccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEE
Q 014324          154 EVIEIKGNLLVAADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFY  233 (426)
Q Consensus       154 ~~~~~~~d~vI~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (426)
                      +..+++||+||+|||.+|.+|+++.......+.....+.+.+.......          .+..+. ......++++++++
T Consensus       155 ~~~~i~ad~VI~AdG~~S~vr~~lg~~~~~~~~~~~a~~~~~~~~~~~~----------~~~~~~-~~~~~~~~G~~~~~  223 (512)
T 3e1t_A          155 VELMAHARFIVDASGNRTRVSQAVGERVYSRFFQNVALYGYFENGKRLP----------APRQGN-ILSAAFQDGWFWYI  223 (512)
T ss_dssp             CEEEEEEEEEEECCCTTCSSGGGTCCEEECSTTCEEEEEEEEESCCCCS----------TTCTTS-EEEEEETTEEEEEE
T ss_pred             CEEEEEcCEEEECCCcchHHHHHcCCCccCchhcceEEEEEecCCccCC----------CCCcCc-eEEEEeCCceEEEE
Confidence            7567999999999999999999983222223334455565554321110          011122 22334567899999


Q ss_pred             EecCCeeeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcceE-----eeeec--cCCCCcc
Q 014324          234 ELLNKRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFI-----NAMYD--CDPLKQI  306 (426)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~--~~p~~~~  306 (426)
                      |++++..++.+.+..+....     ....+.+.++.++.     +.|.+.+.+........     .....  ..+.++|
T Consensus       224 Pl~~~~~~vg~~~~~~~~~~-----~~~~~~~~~~~~l~-----~~p~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~  293 (512)
T 3e1t_A          224 PLSDTLTSVGAVVSREAAEA-----IKDGHEAALLRYID-----RCPIIKEYLAPATRVTTGDYGEIRIRKDYSYCNTSF  293 (512)
T ss_dssp             ECSSSEEEEEEEEEHHHHTT-----TSSCHHHHHHHHHH-----TSHHHHHHHTTCEECCSSTTSSCEEEESCCEEESCS
T ss_pred             EeCCCeEEEEEEecHHHhhh-----hcCCHHHHHHHHHH-----hCchHHHHHhcCccccccccccceeecccccccccc
Confidence            99998888888775432110     01112333333332     56777777654322110     00100  1134556


Q ss_pred             ccccEEEeccccccCCCCCcchhhhhHHHHHHHHHHHHhhc--cccHHHHHHHHHHhhhhhHHHHHHHHHHhhhhh
Q 014324          307 FWSNVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWG--VEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIK  380 (426)
Q Consensus       307 ~~~rv~LvGDAAh~~~P~~G~G~~~ai~Da~~La~~L~~~~--~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~  380 (426)
                      ..+|++|||||||.++|+.|||+|+|++||..|+++|....  ..+.+.+|+.|++.|+++...+.+.......+.
T Consensus       294 ~~~~vvlvGDAAh~~~P~~GqG~~~Al~dA~~La~~L~~~l~~~~~~~~aL~~Ye~~~~~~~~~~~~~~~~~y~~~  369 (512)
T 3e1t_A          294 WKNGMALVGDAACFVDPVFSSGVHLATYSALLVARAINTCLAGEMSEQRCFEEFERRYRREYGNFYQFLVAFYDMN  369 (512)
T ss_dssp             BCSSEEECGGGTEECCSTTCCHHHHHHHHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             ccCCEEEEechhhcCCCccccCHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            77999999999999999999999999999999999998763  245678999999999999998888776654443

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=100.00  E-value=1.5e-35  Score=290.53  Aligned_cols=343  Identities=13%  Similarity=0.072  Sum_probs=217.4

Q ss_pred             CCCCCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhc-cCcce
Q 014324            1 MEKKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHL-ATVPL   79 (426)
Q Consensus         1 m~~~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~-~~~~~   79 (426)
                      ||. .++||+||||||+|+++|+.|+++|++|+|+||.+.+.... ..++..+   +.+.+++++..  +.... .....
T Consensus         2 mm~-~~~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~~~~~g~-~~~g~~l---~~~~l~~lg~~--~~~~~~~~~~~   74 (453)
T 3atr_A            2 MKE-LKYDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWNRIGD-KPCGDAV---SKAHFDKLGMP--YPKGEELENKI   74 (453)
T ss_dssp             CEE-EECSEEEECCSHHHHHHHHHHSSSSCCEEEECSSCGGGTTC-SCCCCEE---EHHHHHHTTCC--CCCGGGEEEEE
T ss_pred             CCC-CcCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCc-ccccccc---cHHHHHHhcCC--CCchHHHHhhh
Confidence            443 35899999999999999999999999999999998753211 1223333   45778888763  21111 00000


Q ss_pred             eeccccccccccccccccccCCCcchhccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEE-EEEEeccCCceE
Q 014324           80 TIDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVT-VKAKVLQTDEVI  156 (426)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~-v~~~~~~~g~~~  156 (426)
                      . ....+......  ...  .....+.++|..+.+.|.+.+. .|+ ++++++|+++..+++  .++ |++.+..+|+..
T Consensus        75 ~-~~~~~~~~~~~--~~~--~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~--~v~gv~~~~~~~G~~~  147 (453)
T 3atr_A           75 N-GIKLYSPDMQT--VWT--VNGEGFELNAPLYNQRVLKEAQDRGVEIWDLTTAMKPIFEDG--YVKGAVLFNRRTNEEL  147 (453)
T ss_dssp             E-EEEEECTTSSC--EEE--EEEEEEEECHHHHHHHHHHHHHHTTCEEESSEEEEEEEEETT--EEEEEEEEETTTTEEE
T ss_pred             c-ceEEECCCCce--EEe--ECCCcEEEcHHHHHHHHHHHHHHcCCEEEeCcEEEEEEEECC--EEEEEEEEEcCCCceE
Confidence            0 00001111000  000  0112456889999999988775 478 999999999986433  433 443322267755


Q ss_pred             EEeecEEEeccCCchhhhhhhcCCCc---ccc--cceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEec----CCC
Q 014324          157 EIKGNLLVAADGCLSSIRQSFLSDFK---LRY--SGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDL----ASG  227 (426)
Q Consensus       157 ~~~~d~vI~AdG~~S~vR~~l~~~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~  227 (426)
                      +++||+||+|||.+|.+|+.+.....   +.+  .....|++.+..+....+          +  . ...+++    .++
T Consensus       148 ~~~ad~VV~AdG~~s~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~--~-~~~~~~~~~~~~~  214 (453)
T 3atr_A          148 TVYSKVVVEATGYSRSFRSKLPPELPITEDLDDKDADVAYREVLLTKEDIED----------H--D-YLRIFIDQETSPG  214 (453)
T ss_dssp             EEECSEEEECCGGGCTTGGGSCTTSGGGCCCCGGGEEEEEEEEEEESSCCTT----------T--T-EEEEECCTTTSTT
T ss_pred             EEEcCEEEECcCCchhhHHhcCCCCCcccCCCcccceeeeEEEEecCCCccC----------C--C-eEEEEECCCCCCC
Confidence            69999999999999999998854331   111  224566666654422100          0  1 112333    367


Q ss_pred             ceEEEEEecCCeeeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcceEeeeeccCCCCccc
Q 014324          228 THSVFYELLNKRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDPLKQIF  307 (426)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  307 (426)
                      ++++++|.+++..++.+........        ....+.+.++++...+.|...  +++    ....+.+....++++|.
T Consensus       215 g~~~~~P~~~~~~~vg~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~--~~~----~~~~~~~p~~~~~~~~~  280 (453)
T 3atr_A          215 GYWWYFPKGKNKVNVGLGIQGGMGY--------PSIHEYYKKYLDKYAPDVDKS--KLL----VKGGALVPTRRPLYTMA  280 (453)
T ss_dssp             SCEEEEEEETTEEEEEEEEESSSCC--------CCHHHHHHHHHHHHCTTEEEE--EEE----EEEEEEEECSSCCSCSE
T ss_pred             cEEEEEECCCCeEEEEEEecCCCCC--------CCHHHHHHHHHHhhhhhcCCC--eEE----eccceeccCCCCCCcee
Confidence            8899999999888887766532210        012233333332222222110  000    00111122245677888


Q ss_pred             cccEEEeccccccCCCCCcchhhhhHHHHHHHHHHHHhhc--cccHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhcCC
Q 014324          308 WSNVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWG--VEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQGLA  384 (426)
Q Consensus       308 ~~rv~LvGDAAh~~~P~~G~G~~~ai~Da~~La~~L~~~~--~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~~~  384 (426)
                      .+|++|+|||||.++|+.|||+|+||+||..|+++|....  ++..+++|+.|+++|++++...+..+..+.+++..+.
T Consensus       281 ~~~v~lvGDAAh~~~P~~G~G~~~Ai~da~~la~~l~~~l~~~~~~~~~L~~Y~~~r~~~~~~~~~~~~~~~~~~~~~~  359 (453)
T 3atr_A          281 WNGIIVIGDSGFTVNPVHGGGKGSAMISGYCAAKAILSAFETGDFSASGLWDMNICYVNEYGAKQASLDIFRRFLQKLS  359 (453)
T ss_dssp             ETTEEECGGGGTCSCTTTCCCHHHHHHHHHHHHHHHHHHHHHTCCSTTTTTHHHHHHHHHTHHHHHHHHHHHHHHTTCC
T ss_pred             cCCEEEEeCcccCCCCCccccHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            8999999999999999999999999999999999998752  2233678999999999999999998888888776543

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=100.00  E-value=1.2e-34  Score=281.89  Aligned_cols=336  Identities=10%  Similarity=-0.006  Sum_probs=215.1

Q ss_pred             CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecc
Q 014324            4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQ   83 (426)
Q Consensus         4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~   83 (426)
                      +.++||+||||||+|+++|+.|+++|++|+|+||.+.+.    .+.|..+.+.+.+.++++++  .+.+.+.+.......
T Consensus         3 ~~~~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~~~~----~~~g~~~~~~~~~~l~~~g~--~~~~~~~~~~~~~~~   76 (421)
T 3nix_A            3 REKVDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQKFPR----FVIGESLLPRCMEHLDEAGF--LDAVKAQGFQQKFGA   76 (421)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSC----CCSCCBCCGGGHHHHHHTTC--HHHHHHTTCEEECEE
T ss_pred             CccCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCC----CcccCcccHhHHHHHHHcCC--hHHHHHcCCcccCCc
Confidence            356899999999999999999999999999999998754    24567899999999999987  566665554332111


Q ss_pred             ccccccc--ccccccc-ccCCCcchhccHHHHHHHHHhcCCC-Ce-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEE
Q 014324           84 NQATDNA--KVTRTLA-RDDNFNFRAAHWADLHGLLYNALPP-EI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEI  158 (426)
Q Consensus        84 ~~~~~~~--~~~~~~~-~~~~~~~~~~~r~~l~~~L~~~~~~-~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~  158 (426)
                      .......  .+..... .......+.++|..+.+.|.+.+.+ |+ ++++++|++++.+++...+.++   ..+|+..++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~v~v~---~~~g~~~~~  153 (421)
T 3nix_A           77 KFVRGKEIADFNFSDQFSNGWNWTWQVPRGNFDKTLADEAARQGVDVEYEVGVTDIKFFGTDSVTTIE---DINGNKREI  153 (421)
T ss_dssp             EEEETTEEEEEETTSCSSCSCCCEEECCHHHHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEE---ETTSCEEEE
T ss_pred             EEEeCCeeEEEeehhhcCCCCCceeEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEE---cCCCCEEEE
Confidence            1111111  1100000 0112234568999999999987764 88 9999999999976554344444   578886679


Q ss_pred             eecEEEeccCCchhhhhhhcCCCcccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeE-ecCCCceEEEEEecC
Q 014324          159 KGNLLVAADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYF-DLASGTHSVFYELLN  237 (426)
Q Consensus       159 ~~d~vI~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  237 (426)
                      +||+||+|||.+|.+|+.+..+..........+...+.......         .+.......++ ...++++.+++|.++
T Consensus       154 ~a~~vV~A~G~~s~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~g~~~~~P~~~  224 (421)
T 3nix_A          154 EARFIIDASGYGRVIPRMFGLDKPSGFESRRTLFTHIKDVKRPV---------AAEMEGNRITAVVHKPKVWIWVIPFSN  224 (421)
T ss_dssp             EEEEEEECCGGGCHHHHHTTCEECCSSCCCEEEEEEEECTTCCC-------------CCSEEEEEEEETTEEEEEEECTT
T ss_pred             EcCEEEECCCCchhhHHhcCCCCCCcCCCcEEEEEEECCCcCCC---------ccCCCCeEEEEEeCCCCEEEEEEEECC
Confidence            99999999999999999875443333233333333333211100         00101111111 234678899999999


Q ss_pred             CeeeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcc---eEeeeeccCCCCccccccEEEe
Q 014324          238 KRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEP---FINAMYDCDPLKQIFWSNVVLI  314 (426)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~p~~~~~~~rv~Lv  314 (426)
                      +..++.+....+....     ......+.++++..     +.|.+.+.+......   ..+..+ ..+..++..++++++
T Consensus       225 ~~~~vg~~~~~~~~~~-----~~~~~~~~l~~~~~-----~~p~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~v~lv  293 (421)
T 3nix_A          225 GNTSVGFVGEPSYFDE-----YTGTPEERMRAMIA-----NEGHIAERFKSEEFLFEPRTIEGY-AISASKLYGDGFVLT  293 (421)
T ss_dssp             SEEEEEEEECHHHHTT-----SCSCHHHHHHHHHH-----TCTTTHHHHTTCCBSSCCEEEECC-CBEESCSEETTEEEC
T ss_pred             CCEEEEEEecHHHhhh-----cCCCHHHHHHHHHH-----hCcHHHHHHhcCccccCceeeccc-ceeeeeeccCCEEEe
Confidence            8888887664322110     00112233333322     345555555544322   111111 223456777999999


Q ss_pred             ccccccCCCCCcchhhhhHHHHHHHHHHHHhhccccHHHHHHHHHHhhhhhHHH
Q 014324          315 GDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTVRLPVTSK  368 (426)
Q Consensus       315 GDAAh~~~P~~G~G~~~ai~Da~~La~~L~~~~~~~~~~~L~~Y~~~R~~~~~~  368 (426)
                      |||||.++|+.|+|+|+|++||..|++.|.+.........++.|++.++.....
T Consensus       294 GDAa~~~~P~~G~G~~~A~~~a~~la~~l~~~~~~~~~~~~~~y~~~~~~~~~~  347 (421)
T 3nix_A          294 GNATEFLDPIFSSGATFAMESGSKGGKLAVQFLKGEEVNWEKDFVEHMMQGIDT  347 (421)
T ss_dssp             GGGTCBCCSTTCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHTHHHHHHHHHH
T ss_pred             cccccccCCcccccHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999998763222234677888888765543

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=100.00  E-value=1.4e-34  Score=289.86  Aligned_cols=343  Identities=13%  Similarity=0.079  Sum_probs=223.7

Q ss_pred             CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeec-
Q 014324            4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTID-   82 (426)
Q Consensus         4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-   82 (426)
                      |.++||+||||||+|+++|+.|+++|++|+|||+.+.+.    .+.|..+.|.+.++++.+|+  .+.+.......... 
T Consensus        21 M~~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~~~~----~~~G~~l~p~~~~~l~~lGl--~~~l~~~~~~~~~~~   94 (591)
T 3i3l_A           21 MTRSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFPR----YRVGESLLPGTMSILNRLGL--QEKIDAQNYVKKPSA   94 (591)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSC----CCCCCBCCHHHHHHHHHTTC--HHHHHHHCCEEECEE
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCCCCC----CceeeeECHHHHHHHHHcCC--cHHHHhcCCcccCCc
Confidence            557899999999999999999999999999999997654    23567899999999999987  55555544332111 


Q ss_pred             -ccccccccccccccccc-----CCCcchhccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCc
Q 014324           83 -QNQATDNAKVTRTLARD-----DNFNFRAAHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDE  154 (426)
Q Consensus        83 -~~~~~~~~~~~~~~~~~-----~~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~  154 (426)
                       ..+..............     .....+.++|..+.+.|.+.++ .|+ ++++++|+++..+ ++..+.|++.+  +|+
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~-~g~~~~V~~~~--~G~  171 (591)
T 3i3l_A           95 TFLWGQDQAPWTFSFAAPKVAPWVFDHAVQVKREEFDKLLLDEARSRGITVHEETPVTDVDLS-DPDRVVLTVRR--GGE  171 (591)
T ss_dssp             EEECSSSCCCEEEECCCC--CTTCCSCEEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEECC-STTCEEEEEEE--TTE
T ss_pred             EEEecCCCccceeecccccccccccCeeEEEcHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEc-CCCEEEEEEec--CCc
Confidence             11111111000000000     1122456889999999988775 588 9999999999864 34456666322  676


Q ss_pred             eEEEeecEEEeccCCchhhhhhhcCCCccc-ccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEE
Q 014324          155 VIEIKGNLLVAADGCLSSIRQSFLSDFKLR-YSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFY  233 (426)
Q Consensus       155 ~~~~~~d~vI~AdG~~S~vR~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (426)
                      ..+++||+||+|||.+|.+|+.+....... +.....+ ..+......          ..+... ..+....++++++.+
T Consensus       172 ~~~i~AdlVV~AdG~~S~lr~~lg~~~~~~~~~~~av~-~~~~~~~~~----------~~~~~~-~~~~~~~~~G~~w~i  239 (591)
T 3i3l_A          172 SVTVESDFVIDAGGSGGPISRKLGVRQYDEFYRNFAVW-SYFKLKDPF----------EGDLKG-TTYSITFEDGWVWMI  239 (591)
T ss_dssp             EEEEEESEEEECCGGGCHHHHHHTCEEEEEEEEEEEEE-EEEECCCSC----------CSTTTT-CEEEEEETTEEEEEE
T ss_pred             eEEEEcCEEEECCCCcchhHHHcCCCCCCccccceEEE-EEEecCccc----------cCCCCC-ceEEEEcCCcEEEEE
Confidence            566999999999999999999984322211 2222222 222211100          001111 233445678899999


Q ss_pred             EecCCeeeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCc---ceEeeeeccCCCCcccccc
Q 014324          234 ELLNKRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKE---PFINAMYDCDPLKQIFWSN  310 (426)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~p~~~~~~~r  310 (426)
                      |.+++..++.+....+...        .......+++++... .+.+.+.+.+.....   ....... ..+..+|..+|
T Consensus       240 Pl~~~~~sv~~~~~~~~~~--------~l~~~~~~~~~~~l~-~~~p~l~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~r  309 (591)
T 3i3l_A          240 PIKDDLYSVGLVVDRSKSA--------EVREQGADAFYSSTL-AKCAKAMDILGGAEQVDEVRIVQDW-SYDTEVFSADR  309 (591)
T ss_dssp             ECSSSEEEEEEEEEGGGHH--------HHHHHCHHHHHHHHH-TTCHHHHHHHTTCEECSCCEEEEEE-EEEESCSEETT
T ss_pred             ECCCCeEEEEEEcCHHHHh--------hhccCCHHHHHHHHH-HhCHHHHHHHhcCccccCceEeccc-ccchhhcccCC
Confidence            9998888887766532210        000011122222222 244566565543221   1111111 22345677899


Q ss_pred             EEEeccccccCCCCCcchhhhhHHHHHHHHHHHHhh--ccccHHHHHHHHHHhhhhhHHHHHHHHHHhh
Q 014324          311 VVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKW--GVEGLLSALEEYQTVRLPVTSKQVLHSRRLG  377 (426)
Q Consensus       311 v~LvGDAAh~~~P~~G~G~~~ai~Da~~La~~L~~~--~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~  377 (426)
                      +++||||||.++|+.|||+|+|++||..|+++|...  ..+..+.+++.|++.|+++...+.+......
T Consensus       310 vvLIGDAAh~~~Pl~GqGinlAl~dA~~LA~~L~~~l~~~~~~~~al~~Y~~~~~~~~~~i~~~~~~~Y  378 (591)
T 3i3l_A          310 FFLCGDAACFTDPLFSQGVHLASQSAVSAAAAIDRITRHGDEKDAVHAWYNRTYREAYEQYHQFLASFY  378 (591)
T ss_dssp             EEECGGGTCBCCGGGCCHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEccccccCCCcccccHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999876  3345678999999999999998888877665

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=100.00  E-value=2e-36  Score=290.24  Aligned_cols=323  Identities=16%  Similarity=0.116  Sum_probs=202.7

Q ss_pred             ccEEEEcCChHHHHHHHHHHHc--CCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCc-hh-hhccCcceeec
Q 014324            7 GKAVIVGGSIAGISCAHALLRA--GWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRP-HL-LHLATVPLTID   82 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~--G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~-~~-~~~~~~~~~~~   82 (426)
                      +||+||||||+||++|+.|+++  |++|+||||.+.+.   ..|+++.+++++++.+...+.  . +. +........ .
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~~---~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~   74 (381)
T 3c4a_A            1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQE---VLGWGVVLPGRPGQHPANPLS--YLDAPERLNPQFLE-D   74 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTTC---CCCSEEEEESCTTTCTTCGGG--GSSCGGGGCCEEEC-C
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCCC---cceeEEEeCcHHHHhhcCcch--hhhhhHHHhhcccc-c
Confidence            4899999999999999999999  99999999998764   357788888877661111111  1 11 211111111 0


Q ss_pred             cccccccccccccccccCCCcchhccHHHHHHHHHhcCCC-Ce-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEee
Q 014324           83 QNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPP-EI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKG  160 (426)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~-~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~  160 (426)
                      ......+..+    ......++..++|..|.+.|.+.+++ |+ ++++++|++++.  .              +  +++|
T Consensus        75 ~~~~~~g~~~----~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~--~--------------~--~~~a  132 (381)
T 3c4a_A           75 FKLVHHNEPS----LMSTGVLLCGVERRGLVHALRDKCRSQGIAIRFESPLLEHGE--L--------------P--LADY  132 (381)
T ss_dssp             EEEEESSSEE----ECCCCSCEEEEEHHHHHHHHHHHHHHTTCEEETTCCCCSGGG--C--------------C--GGGC
T ss_pred             eEEEeCCeeE----EecCCCceeeecHHHHHHHHHHHHHHCCCEEEeCCEeccchh--c--------------c--cccC
Confidence            1111122211    11113345678999999999988764 77 999998887641  1              1  1579


Q ss_pred             cEEEeccCCchhhhhhhcCCCccc---ccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceE--EEEEe
Q 014324          161 NLLVAADGCLSSIRQSFLSDFKLR---YSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHS--VFYEL  235 (426)
Q Consensus       161 d~vI~AdG~~S~vR~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  235 (426)
                      |+||+|||.+|. |+.+.....+.   +.+...|.+.....+                 .....+...+.++.  .++|+
T Consensus       133 d~vV~AdG~~S~-R~~l~~~~g~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~g~~~~~~~p~  194 (381)
T 3c4a_A          133 DLVVLANGVNHK-TAHFTEALVPQVDYGRNKYIWYGTSQLFD-----------------QMNLVFRTHGKDIFIAHAYKY  194 (381)
T ss_dssp             SEEEECCGGGGG-TCCSSGGGCCCCEEEEEEEEEEEESSCCS-----------------SEEEEEEEETTEEEEEEEEEC
T ss_pred             CEEEECCCCCch-HHhhhhhcCCCcccCCccEEEEecCCCCC-----------------cceeeEeeCCCcEEEEEEEEe
Confidence            999999999999 99874322222   234455655432210                 00111111233333  35788


Q ss_pred             cCCeeeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcceEeeeeccCCCCccccccEEEec
Q 014324          236 LNKRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDPLKQIFWSNVVLIG  315 (426)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~rv~LvG  315 (426)
                      +++...+.+.. .+.. .....+ ...+.+...+.+...+..|.+.. +++...  ...|..+...+.++|..+|++|+|
T Consensus       195 ~~~~~~~~~~~-~~~~-~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~-~l~~~~--~~~~~~~~~~~~~~~~~grv~LvG  268 (381)
T 3c4a_A          195 SDTMSTFIVEC-SEET-YARARL-GEMSEEASAEYVAKVFQAELGGH-GLVSQP--GLGWRNFMTLSHDRCHDGKLVLLG  268 (381)
T ss_dssp             SSSCEEEEEEE-CHHH-HHHTTS-SSSCHHHHHHHHHHHTHHHHTTC-CCBCCT--TTCSEEEEECCCSCSEETTEEECG
T ss_pred             cCCeEEEEEEC-Cccc-cccCCc-ccCChHHHHHHHHHHhcccCCCc-hhhcCC--CcceeeeccccCCCcccCCEEEEE
Confidence            77664333222 1110 000000 11123333333333333333221 222211  123455445677889999999999


Q ss_pred             cccccCCCCCcchhhhhHHHHHHHHHHHHhhccccHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhcC
Q 014324          316 DAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQGL  383 (426)
Q Consensus       316 DAAh~~~P~~G~G~~~ai~Da~~La~~L~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~~  383 (426)
                      ||||.++|+.|||+|+||+||.+|+++|...  .+.+.+|+.|+++|++++..++..++.+.+++..+
T Consensus       269 DAAh~~~P~~GqG~~~al~Da~~La~~L~~~--~~~~~aL~~Y~~~r~~~~~~~~~~s~~~~~~~~~~  334 (381)
T 3c4a_A          269 DALQSGHFSIGHGTTMAVVVAQLLVKALCTE--DGVPAALKRFEERALPLVQLFRGHADNSRVWFETV  334 (381)
T ss_dssp             GGTCCCCGGGCCHHHHHHHHHHHHHHHHHHS--SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             ccccccCCCccccHHHHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhch
Confidence            9999999999999999999999999999875  46789999999999999999999999999887764

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=100.00  E-value=3.5e-32  Score=271.21  Aligned_cols=331  Identities=13%  Similarity=0.013  Sum_probs=201.1

Q ss_pred             CCCCCCccEEEEcCChHHHHHHHHHHH------------cCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCC
Q 014324            1 MEKKEKGKAVIVGGSIAGISCAHALLR------------AGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGR   68 (426)
Q Consensus         1 m~~~~~~~V~IvGaG~aGl~~A~~L~~------------~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~   68 (426)
                      ||++..+||+||||||||+++|+.|++            .|++|+|||+...+.    .+.|..+.|+++++++++|+. 
T Consensus         2 mm~~~~~dVvIVGgG~aGl~aA~~La~~~~~~~~~~~~~~G~~V~liE~~~~~~----~g~g~~~~p~~~~~l~~lGi~-   76 (526)
T 2pyx_A            2 MMQKPITEIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSPKLNITLIESPDVAT----IGVGEGTWPSMRSTLSKIGID-   76 (526)
T ss_dssp             GGGSCCCEEEEECCHHHHHHHHHHHHHHHHEETTEECSSCSCEEEEEECSSCCC----CCSCEECCTHHHHHHHHHTCC-
T ss_pred             CCCCCCCeEEEECCCHHHHHHHHHHHhhhccccccccCCCCCeEEEEeCCCCCC----cceeeechHhHHHHHHHcCCC-
Confidence            666667899999999999999999999            999999999976543    345778999999999999984 


Q ss_pred             chh--hhccCccee--eccccccc----------------cc-----ccccc-c----c---------------------
Q 014324           69 PHL--LHLATVPLT--IDQNQATD----------------NA-----KVTRT-L----A---------------------   97 (426)
Q Consensus        69 ~~~--~~~~~~~~~--~~~~~~~~----------------~~-----~~~~~-~----~---------------------   97 (426)
                       +.  +.+......  ..+..+..                +.     .+... .    .                     
T Consensus        77 -e~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~v~~q~~~~~~~~~~~  155 (526)
T 2pyx_A           77 -ENDFIRQCDASFKQGSRFINWCKDPQSNVADSYLHPFSLPHGHQELDLCPYWLPHAEQVSFAEAVCSQQVLTQLGLAPK  155 (526)
T ss_dssp             -HHHHHHHTTCEEECEEEEESCSSCCBTTBCCEEEEESSCCTTTTTCCCHHHHGGGTTTSCHHHHHCSHHHHHHTTBCSS
T ss_pred             -HHHHHHHcCCEEECCCcccCCCccccCCCCCceecCCCCCCCCCCCChhHHHHhhhhccCchhhcccccchhhhccchh
Confidence             43  444332211  00000000                00     00000 0    0                     


Q ss_pred             ----c---cCCCcchhccHHHHHHHHHhcCC--CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEecc
Q 014324           98 ----R---DDNFNFRAAHWADLHGLLYNALP--PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAAD  167 (426)
Q Consensus        98 ----~---~~~~~~~~~~r~~l~~~L~~~~~--~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~Ad  167 (426)
                          .   ......+.++|..+.+.|.+.+.  .|+ ++++ +|++++.++++..+.|+   +.+|.+  ++||+||+||
T Consensus       156 ~~~~~~~~~~~~~~~~~~r~~l~~~L~~~a~~~~Gv~i~~~-~v~~i~~~~~g~~~~v~---~~~g~~--i~ad~vV~Ad  229 (526)
T 2pyx_A          156 SIVTAQYHFQNNYGYHLNAAKFSQLLTEHCTQKLGVTHIRD-HVSQIINNQHGDIEKLI---TKQNGE--ISGQLFIDCT  229 (526)
T ss_dssp             CTTSCTTCCSSCCEEEECHHHHHHHHHHHHHHTSCCEEEEC-CEEEEEECTTSCEEEEE---ESSSCE--EECSEEEECS
T ss_pred             hhhccccCCCCCeeEEEcHHHHHHHHHHHHHhcCCCEEEEe-EEEEEEecCCCcEEEEE---ECCCCE--EEcCEEEECC
Confidence                0   00112346889999999988765  477 8888 69999875444444555   456664  8999999999


Q ss_pred             CCchhh-hhhhcCCCc--cc-ccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEEEecCCeeeEE
Q 014324          168 GCLSSI-RQSFLSDFK--LR-YSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELLNKRLNWV  243 (426)
Q Consensus       168 G~~S~v-R~~l~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (426)
                      |.+|.+ |+.+.....  .. ......+...+......           .+.... ......+.++.+.+|+++. ....
T Consensus       230 G~~S~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~-~~~~~~~~g~~~~~pl~~~-~~~~  296 (526)
T 2pyx_A          230 GAKSLLLGEHLQVPFLSQKSVLFNDRALAIQVPYSDAN-----------SPIASC-THSTAQPNGWIWDIGLPTR-KGVG  296 (526)
T ss_dssp             GGGCCCCCCCTCCCEEECHHHHCCCEEEEEEEECSSTT-----------CCCCSS-EEEEEETTEEEEEEECSSE-EEEE
T ss_pred             CcchHHHHHHhCCCcccccccccCccEEEEEeeccCCC-----------CCCCCc-eeEEecCCCeEEEeeCCCc-eEEE
Confidence            999999 555432111  00 11111222222222100           000111 1122345678888888774 3333


Q ss_pred             EEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcceEeeeeccCCCCccccccEEEeccccccCCC
Q 014324          244 WYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDPLKQIFWSNVVLIGDAAHPTTP  323 (426)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~rv~LvGDAAh~~~P  323 (426)
                      +.+....           .+.+...+.+......+.+.+.    ... ...+... ....++|..+|++|||||||.++|
T Consensus       297 ~v~~~~~-----------~~~~~~~~~l~~~l~~~~~~l~----~~~-~~~~~~~-~~~~~~~~~grv~LiGDAAh~~~P  359 (526)
T 2pyx_A          297 YVYSSSH-----------TNDIDAQKTLFNYLGVDGAAAD----KLE-PRQLAIN-PGYRAKCWQNNCIAIGMAAGFIEP  359 (526)
T ss_dssp             EEECTTT-----------CCHHHHHHHHHHHHTCCHHHHH----HCC-CEEEECC-CEEESCSEETTEEECGGGTEECCC
T ss_pred             EEecCCC-----------CChHHHHHHHHHHHHhcCcccc----cCC-ceEEecc-cCccccccCCCEEEEEhhhcccCc
Confidence            3222111           0122223333333333433321    111 1122221 112345667999999999999999


Q ss_pred             CCcchhhhhHHHHHHHHHHHHhhccccHHHHHHHHHHhhhhhHHHHHHHHH
Q 014324          324 HGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTVRLPVTSKQVLHSR  374 (426)
Q Consensus       324 ~~G~G~~~ai~Da~~La~~L~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~  374 (426)
                      +.|||+|+|++||..|++.|.... ...+.+|+.|+++|+++...+.+...
T Consensus       360 ~~GqGi~~ai~da~~La~~L~~~~-~~~~~~l~~Y~~~~~~~~~~~~~~~~  409 (526)
T 2pyx_A          360 LEASALALIEWTASTLAQQLPPNR-MVMDTISARVNERYQQHWQQIIDFLK  409 (526)
T ss_dssp             TTCHHHHHHHHHHHHHHHTCCSCH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccHHHHHHHHHHHHHHhhhcC-CcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999987422 34578999999999999887766443

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=100.00  E-value=4.2e-32  Score=272.81  Aligned_cols=342  Identities=14%  Similarity=0.116  Sum_probs=205.0

Q ss_pred             CccEEEEcCChHHHHHHHHHHHc------CCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcce
Q 014324            6 KGKAVIVGGSIAGISCAHALLRA------GWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPL   79 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~------G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~   79 (426)
                      .+||+|||||||||++|+.|+++      |++|+||||.+.++..  ...|..+.+++++.|  + .    .+.+.+.+.
T Consensus        35 ~~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~g~~--~~~g~~l~~~~l~~l--l-~----~~~~~g~~~  105 (584)
T 2gmh_A           35 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAH--TLSGACLDPRAFEEL--F-P----DWKEKGAPL  105 (584)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTT--CCCCCEECTHHHHHH--C-T----THHHHTCCC
T ss_pred             CCCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCCCCc--cccccccCHHHHHHH--H-H----HHHhcCCce
Confidence            47999999999999999999999      9999999999887542  223455788876654  1 1    111111111


Q ss_pred             ee-----cccccccccccccc--cc-ccCCCcchhccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEe
Q 014324           80 TI-----DQNQATDNAKVTRT--LA-RDDNFNFRAAHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKV  149 (426)
Q Consensus        80 ~~-----~~~~~~~~~~~~~~--~~-~~~~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~  149 (426)
                      ..     ..........+...  .. .......+.++|..|.++|.+.++ .|+ |+++++++++..++++..+.|++.+
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~l~~~~~g~V~gV~~~~  185 (584)
T 2gmh_A          106 NTPVTEDRFGILTEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATND  185 (584)
T ss_dssp             CEECCEEEEEEECSSCEEECCCCTTSTTCCTTCEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECC
T ss_pred             eeeechhheeeeccCCCccccccCccccccCCCEEEeHHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCCCEEEEEeCC
Confidence            00     00001110000000  00 011123456889999999998776 488 9999999999875544333355321


Q ss_pred             ---ccCCce-------EEEeecEEEeccCCchhhhhhhcC----CC--cccccceEEEEEEeeCCCCCchHHHhhhhccc
Q 014324          150 ---LQTDEV-------IEIKGNLLVAADGCLSSIRQSFLS----DF--KLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVY  213 (426)
Q Consensus       150 ---~~~g~~-------~~~~~d~vI~AdG~~S~vR~~l~~----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (426)
                         ..+|+.       .+++||+||+|||.+|.+|+++..    ..  .+...+. .+..++..+...            
T Consensus       186 ~g~~~~G~~~~~~~~g~~i~Ad~VV~AdG~~S~vr~~l~~~~gl~~~~~p~~~g~-g~~~~~~v~~~~------------  252 (584)
T 2gmh_A          186 VGIQKDGAPKTTFERGLELHAKVTIFAEGCHGHLAKQLYKKFDLRANCEPQTYGI-GLKELWVIDEKK------------  252 (584)
T ss_dssp             EEECTTSCEEEEEECCCEEECSEEEECCCTTCHHHHHHHHHTTTTTTSCCCCEEE-EEEEEEECCGGG------------
T ss_pred             ccccCCCCcccccCCceEEECCEEEEeeCCCchHHHHHHHHhCCCCCCCchhHHh-hhhhheecCccc------------
Confidence               024532       358999999999999999998732    11  1111121 233333332110            


Q ss_pred             CCCCceeeEe-----cCCCceEEEEEec--CCeeeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHh
Q 014324          214 PDLGKCLYFD-----LASGTHSVFYELL--NKRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVI  286 (426)
Q Consensus       214 ~~~~~~~~~~-----~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (426)
                      ...+...+..     ....+..+++|.+  ++..++.+....+....      ...+.+.++++    ..  .|.+.+++
T Consensus       253 ~~~~~~~~~~g~~~~~~~~gg~~~~~~~~~~~~~~vg~~~~~~~~~~------~~~~~~~l~~~----~~--~p~i~~~l  320 (584)
T 2gmh_A          253 WKPGRVDHTVGWPLDRHTYGGSFLYHLNEGEPLLALGFVVGLDYQNP------YLSPFREFQRW----KH--HPSIKPTL  320 (584)
T ss_dssp             CCTTEEEEEEETTSCTTSCEEEEEEECCSSSCEEEEEEEEETTCCCT------TCCHHHHHHHH----TT--STTTHHHH
T ss_pred             ccCCeEEEEEeccccCCcCCceEEEEecCCCCeEEEEEEEecCcccc------cCChHHHHHHH----Hh--ChHHHHHh
Confidence            0011111111     0112345677887  67788877765433210      00122223222    11  34566666


Q ss_pred             hhcCcce-E-eeee--ccCCCCccccccEEEeccccccCCCCCcchhhhhHHHHHHHHHHHHhhcc-c--cHHHH---HH
Q 014324          287 KETKEPF-I-NAMY--DCDPLKQIFWSNVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGV-E--GLLSA---LE  356 (426)
Q Consensus       287 ~~~~~~~-~-~~~~--~~~p~~~~~~~rv~LvGDAAh~~~P~~G~G~~~ai~Da~~La~~L~~~~~-~--~~~~~---L~  356 (426)
                      +...... . ..+.  ...++++|..+|++|||||||.++|+.|||+|+||+||.+||++|..... .  ..+++   |+
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~~~Ai~da~~LA~~L~~~~~~g~~~~~~a~~~L~  400 (584)
T 2gmh_A          321 EGGKRIAYGARALNEGGFQSIPKLTFPGGLLIGCSPGFMNVPKIKGTHTAMKSGTLAAESIFNQLTSENLQSKTIGLHVT  400 (584)
T ss_dssp             TTCEEEEEEEEEEECCGGGGCCCCEETTEEECTTTTCCCBTTTTBCHHHHHHHHHHHHHHHHHHHTCCCCCCSSSSCCCT
T ss_pred             CCCeEEEecceEccCCCcccCCccccCCEEEEcccccccCccccccHHHHHHHHHHHHHHHHHHHHcCCcchhhhhhhHH
Confidence            4322111 0 0111  13346778889999999999999999999999999999999999987632 2  23453   89


Q ss_pred             HHHHhhhhh-HHHHHHHHHHhhhhhh
Q 014324          357 EYQTVRLPV-TSKQVLHSRRLGRIKQ  381 (426)
Q Consensus       357 ~Y~~~R~~~-~~~~~~~~~~~~~~~~  381 (426)
                      .|+++|+++ +.+.+..++.+..+++
T Consensus       401 ~Ye~~r~~~~v~~~l~~~r~~~~~~~  426 (584)
T 2gmh_A          401 EYEDNLKNSWVWKELYSVRNIRPSCH  426 (584)
T ss_dssp             HHHHHHHTSHHHHHHHHTTTTTGGGG
T ss_pred             HHHHHHHHhHHHHHHHHHhChhHHHH
Confidence            999999998 5777777777766664

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=99.97  E-value=1.8e-29  Score=252.34  Aligned_cols=324  Identities=11%  Similarity=-0.003  Sum_probs=194.0

Q ss_pred             CCCccEEEEcCChHHHHHHHHHHH---cCCcEEEEcccCCCCCCCCCcceeccChhHHH-HHHHHhcCCchhhhccCcce
Q 014324            4 KEKGKAVIVGGSIAGISCAHALLR---AGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQR-IIQSWLNGRPHLLHLATVPL   79 (426)
Q Consensus         4 ~~~~~V~IvGaG~aGl~~A~~L~~---~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~-~l~~~~~~~~~~~~~~~~~~   79 (426)
                      +..+||+|||||++|+++|+.|++   .|++|+|||+...+.    .+.|..+.+.+.+ +++.+|+...+.+.......
T Consensus         3 ~~~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~~~~----~~~g~~~~~~~~~~~l~~lG~~~~~~~~~~~~~~   78 (538)
T 2aqj_A            3 KPIKNIVIVGGGTAGWMAASYLVRALQQQANITLIESAAIPR----IGVGEATIPSLQKVFFDFLGIPEREWMPQVNGAF   78 (538)
T ss_dssp             CBCCEEEEECCSHHHHHHHHHHHHHCCSSCEEEEEECSSSCC----CCSCEECCTHHHHHTHHHHTCCHHHHGGGGTCEE
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhhcCCCCEEEEECCCCCCC----cCCCcccchhHHHHHHHHhCCCHHHHHHhcCchh
Confidence            356899999999999999999999   999999999976543    3346778899999 99999884111133322221


Q ss_pred             e--eccccc--------------cccc-------ccccc-c-c-----c-c-------------------------CCCc
Q 014324           80 T--IDQNQA--------------TDNA-------KVTRT-L-A-----R-D-------------------------DNFN  103 (426)
Q Consensus        80 ~--~~~~~~--------------~~~~-------~~~~~-~-~-----~-~-------------------------~~~~  103 (426)
                      .  ..+..+              ..+.       .+... . .     . .                         ....
T Consensus        79 ~~g~~~~~w~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  158 (538)
T 2aqj_A           79 KAAIKFVNWRKSPDPSRDDHFYHLFGNVPNCDGVPLTHYWLRKREQGFQQPMEYACYPQPGALDGKLAPCLSDGTRQMSH  158 (538)
T ss_dssp             ECEEEEESCSSSCCTTSCCEEEEESSCCCEETTEEHHHHHHHHHHTTCCSCHHHHHCSCHHHHHTTBCSBCTTCCBCSCC
T ss_pred             hCCccccCcCcccccCCCCceECCCCccCccccCchhHHHHHhcccccccCccccccccccHhhhccchHhhcCCcCCCc
Confidence            1  000000              0000       00000 0 0     0 0                         0112


Q ss_pred             chhccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCchhhhhhhcCCC
Q 014324          104 FRAAHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSIRQSFLSDF  181 (426)
Q Consensus       104 ~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~vR~~l~~~~  181 (426)
                      .+.++|..+.+.|.+.+. .|+ ++++ +|+++..++++..+.|+   +.+|++  ++||+||+|||.+|.+|+.+++..
T Consensus       159 ~~~i~~~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~g~~~~v~---~~~g~~--i~ad~vV~A~G~~s~~~~~~lg~~  232 (538)
T 2aqj_A          159 AWHFDAHLVADFLKRWAVERGVNRVVD-EVVDVRLNNRGYISNLL---TKEGRT--LEADLFIDCSGMRGLLINQALKEP  232 (538)
T ss_dssp             EEEECHHHHHHHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEE---ETTSCE--ECCSEEEECCGGGCCCCCCCTCCC
T ss_pred             cEEEeHHHHHHHHHHHHHHCCCEEEEe-eEeEEEEcCCCcEEEEE---ECCCcE--EEeCEEEECCCCchhhHHHHhCCC
Confidence            356889999999988775 478 8888 89999875444345555   567754  899999999999999976553221


Q ss_pred             cccccc----eEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEEEecCCeeeEEEEEecCCCCcCCCc
Q 014324          182 KLRYSG----YCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELLNKRLNWVWYINQPEPIMKGNS  257 (426)
Q Consensus       182 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (426)
                      ...+..    ...+...++...    +.     .....   .......+.++.+++|.++. ..+.+.+....       
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~----~~-----~~~~~---~~~~~~~~~g~~~~~p~~~~-~~~g~v~~~~~-------  292 (538)
T 2aqj_A          233 FIDMSDYLLCDSAVASAVPNDD----AR-----DGVEP---YTSSIAMNSGWTWKIPMLGR-FGSGYVFSSHF-------  292 (538)
T ss_dssp             EEECTTTCCCCEEEEEEEECCH----HH-----HCCCS---SEEEEECSSEEEEEEEETTE-EEEEEEECTTT-------
T ss_pred             ccccccccccceEEEEecccCC----cc-----cCCCC---ceeeeecCCceEEEecCCCc-eEEEEEEcCCC-------
Confidence            111111    112211122110    00     00011   11123456778899998774 33333332110       


Q ss_pred             ceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcceEeeeeccCCCCccccccEEEeccccccCCCCCcchhhhhHHHHH
Q 014324          258 VTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDPLKQIFWSNVVLIGDAAHPTTPHGLRSTNMSILDAM  337 (426)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~rv~LvGDAAh~~~P~~G~G~~~ai~Da~  337 (426)
                          .+.+...+.+...... .+ +       .....+... ....+++..+|++|||||||.++|+.|||+|+|++||.
T Consensus       293 ----~~~~~~~~~l~~~~~~-~~-~-------~~~~~~~~~-~~~~~~~~~grvvliGDAAh~~~P~~gqG~~~a~~da~  358 (538)
T 2aqj_A          293 ----TSRDQATADFLKLWGL-SD-N-------QPLNQIKFR-VGRNKRAWVNNCVSIGLSSCFLEPLESTGIYFIYAALY  358 (538)
T ss_dssp             ----SCHHHHHHHHHHHHTC-CT-T-------CCCEEEECC-CEEESCSEETTEEECGGGTEECCGGGSCHHHHHHHHHH
T ss_pred             ----CChHHHHHHHHHHhcC-CC-C-------CCceEEeec-cccccccccCCEEEEcccccccCcchhccHHHHHHHHH
Confidence                0222222222222221 11 0       111112211 11234567799999999999999999999999999999


Q ss_pred             HHHHHHHhhccccHHHHHHHHHHhhhhhHHHHHHHH
Q 014324          338 VLGKSLEKWGVEGLLSALEEYQTVRLPVTSKQVLHS  373 (426)
Q Consensus       338 ~La~~L~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~  373 (426)
                      .|++.|...  ...+.+|+.|+++|+++...+.+..
T Consensus       359 ~La~~L~~~--~~~~~~l~~Y~~~~~~~~~~~~~~~  392 (538)
T 2aqj_A          359 QLVKHFPDT--SFDPRLSDAFNAEIVHMFDDCRDFV  392 (538)
T ss_dssp             HHHHTCCBT--TCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhcc--CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            999998742  4567899999999999887766543

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=99.97  E-value=3e-29  Score=249.63  Aligned_cols=323  Identities=13%  Similarity=-0.027  Sum_probs=190.5

Q ss_pred             ccEEEEcCChHHHHHHHHHHH---cCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeec-
Q 014324            7 GKAVIVGGSIAGISCAHALLR---AGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTID-   82 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~---~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-   82 (426)
                      +||+|||||++|+++|+.|++   +|++|+|||+...+.    .+.|..+.|...++++.+|+...+.+.......... 
T Consensus         3 ~dVvIVGgG~aGl~~A~~La~~~~~G~~V~lvE~~~~~~----~~~g~~~~~~~~~~l~~lgi~~~~~~~~~~~~~~~~~   78 (511)
T 2weu_A            3 RSVVIVGGGTAGWMTASYLKAAFDDRIDVTLVESGNVRR----IGVGEATFSTVRHFFDYLGLDEREWLPRCAGGYKLGI   78 (511)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHHHGGGSEEEEEEC-----------CCEECCTTHHHHHHHHTCCHHHHHHHTTCEEECEE
T ss_pred             ceEEEECCCHHHHHHHHHHHhhcCCCCEEEEEecCCCCc----eeeccccCcchHHHHHHcCCCHHHHHHHcCCeEeccc
Confidence            699999999999999999999   999999999986542    345677889999999999984111143333221100 


Q ss_pred             -cccc---------ccc-------ccc------------c----------------------cccc----c---------
Q 014324           83 -QNQA---------TDN-------AKV------------T----------------------RTLA----R---------   98 (426)
Q Consensus        83 -~~~~---------~~~-------~~~------------~----------------------~~~~----~---------   98 (426)
                       +..+         ..+       ..+            .                      ....    .         
T Consensus        79 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  158 (511)
T 2weu_A           79 RFENWSEPGEYFYHPFERLRVVDGFNMAEWWLAVGDRRTSFSEACYLTHRLCEAKRAPRMLDGSLFASQVDESLGRSTLA  158 (511)
T ss_dssp             EEESSSSTTCEEEEESCCCCEETTEEHHHHHHHHC----CHHHHHCHHHHHHHTTBCSBCTTSCBCC------CCSCCGG
T ss_pred             eecCCCCCCCceEcCCCCCCCCCCCchHHHHHhccccccCcccccccccCHHHhhhhHHhHhcCCccccccccccccccc
Confidence             0000         000       000            0                      0000    0         


Q ss_pred             -cC--CCcchhccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCchhh
Q 014324           99 -DD--NFNFRAAHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSI  173 (426)
Q Consensus        99 -~~--~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~v  173 (426)
                       ..  ....+.++|..+.+.|.+.+. .|+ ++++ +|++++.++++..+.|+   +.+|++  ++||+||+|||.+|.+
T Consensus       159 ~~~~~~~~~~~~~~~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~~~~~~v~---~~~g~~--~~ad~vV~A~G~~S~~  232 (511)
T 2weu_A          159 EQRAQFPYAYHFDADEVARYLSEYAIARGVRHVVD-DVQHVGQDERGWISGVH---TKQHGE--ISGDLFVDCTGFRGLL  232 (511)
T ss_dssp             GCCSCCSCEEEECHHHHHHHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEE---ESSSCE--EECSEEEECCGGGCCC
T ss_pred             cCcCCCCeeEEEcHHHHHHHHHHHHHHCCCEEEEC-eEeEEEEcCCCCEEEEE---ECCCCE--EEcCEEEECCCcchHH
Confidence             00  112356889999999988765 488 8889 99999875444345555   566754  8999999999999999


Q ss_pred             hhhhcC-CCc---ccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEEEecCCeeeEEEEEecC
Q 014324          174 RQSFLS-DFK---LRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELLNKRLNWVWYINQP  249 (426)
Q Consensus       174 R~~l~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (426)
                      |+.+.+ ...   ........+...+.....   +.       .+  . .......+.++.+++|.++ ...+.+.....
T Consensus       233 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~-------~~--~-~~~~~~~~~g~~~~~P~~~-~~~~g~~~~~~  298 (511)
T 2weu_A          233 INQTLGGRFQSFSDVLPNNRAVALRVPREND---ED-------MR--P-YTTATAMSAGWMWTIPLFK-RDGNGYVYSDE  298 (511)
T ss_dssp             CCCCTCCCEEECTTTCCCCEEEEEEEECSSG---GG-------CC--S-SEEEEEETTEEEEEEECSS-EEEEEEEECTT
T ss_pred             HHHHhCCCCccccccCcccceEEEEeccCCC---CC-------CC--c-ceeceecCCCcEEEEECCC-ceEEEEEECCC
Confidence            665432 111   001111112112222110   00       01  1 1123345667888999876 44444333211


Q ss_pred             CCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcceEeeeeccCCCCccccccEEEeccccccCCCCCcchh
Q 014324          250 EPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDPLKQIFWSNVVLIGDAAHPTTPHGLRST  329 (426)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~rv~LvGDAAh~~~P~~G~G~  329 (426)
                      .           .+.+...+.+.... .+.+.+       ......... ....+++..+|++|||||||.++|+.|+|+
T Consensus       299 ~-----------~~~~~~~~~l~~~~-~~~~~~-------~~~~~~~~~-~~~~~~~~~~rv~liGDAAh~~~P~~g~G~  358 (511)
T 2weu_A          299 F-----------ISPEEAERELRSTV-APGRDD-------LEANHIQMR-IGRNERTWINNCVAVGLSAAFVEPLESTGI  358 (511)
T ss_dssp             T-----------SCHHHHHHHHHHHH-CTTCTT-------SCCEEEECC-CEEESCSEETTEEECGGGTEECCGGGCCHH
T ss_pred             C-----------CCHHHHHHHHHHHh-Cccccc-------ccceeEEee-ccccccccCCCEEEEechhhccCccccccH
Confidence            0           12222222222111 111111       111111111 112344567999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHhhccccHHHHHHHHHHhhhhhHHHHHHHHHH
Q 014324          330 NMSILDAMVLGKSLEKWGVEGLLSALEEYQTVRLPVTSKQVLHSRR  375 (426)
Q Consensus       330 ~~ai~Da~~La~~L~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~  375 (426)
                      |+|++||..|+++|...  ...+.+|+.|+++|+++...+.+....
T Consensus       359 ~~a~~da~~La~~l~~~--~~~~~~l~~Y~~~~~~~~~~~~~~~~~  402 (511)
T 2weu_A          359 FFIQHAIEQLVKHFPGE--RWDPVLISAYNERMAHMVDGVKEFLVL  402 (511)
T ss_dssp             HHHHHHHHHHHHTCCCT--TCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccC--CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999752  456789999999999988877665443

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=99.97  E-value=3e-29  Score=251.14  Aligned_cols=329  Identities=12%  Similarity=0.002  Sum_probs=195.7

Q ss_pred             CCccEEEEcCChHHHHHHHHHHH---cCCcEEEEcccCCCCCCCCCcceeccChhHHH-HHHHHhcCCchhhhccCccee
Q 014324            5 EKGKAVIVGGSIAGISCAHALLR---AGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQR-IIQSWLNGRPHLLHLATVPLT   80 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~---~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~-~l~~~~~~~~~~~~~~~~~~~   80 (426)
                      ..+||+||||||+|+++|+.|++   .|++|+|||+...+.    .+.|..+.|.+.+ +++.+|+...+.+........
T Consensus        24 ~~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~~~~----~~~g~~~~p~~~~~~l~~lGi~~~~~~~~~~~~~~   99 (550)
T 2e4g_A           24 KIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPDIPT----LGVGEATIPNLQTAFFDFLGIPEDEWMRECNASYK   99 (550)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTTTSSEEEEEECCCCCC----CCCCEECCTHHHHHTHHHHTCCHHHHHHHTTCEEE
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCCcEEEEeCCCCCc----cceeeeechhHHHHHHHHhCCChHHHHHhcCCeEE
Confidence            46899999999999999999999   999999999976543    3456788899999 999999841111443322111


Q ss_pred             --ecccccc-c-------------cc----ccc-----------------------c-----c------cc-c-------
Q 014324           81 --IDQNQAT-D-------------NA----KVT-----------------------R-----T------LA-R-------   98 (426)
Q Consensus        81 --~~~~~~~-~-------------~~----~~~-----------------------~-----~------~~-~-------   98 (426)
                        ..+..+. .             +.    .++                       .     .      .. .       
T Consensus       100 ~g~~~~~w~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (550)
T 2e4g_A          100 VAIKFINWRTAGEGTSEARELDGGPDHFYHSFGLLKYHEQIPLSHYWFDRSYRGKTVEPFDYACYKEPVILDANRSPRRL  179 (550)
T ss_dssp             CEEEEESSSSCCCCCSSCCEETTEESEEEEESSCCCEETTEEHHHHHHHHHHTTSCCCCHHHHHCSHHHHHHTTBCSBCT
T ss_pred             EeeeEeecccccccccccccccCCCCeeEecCCccCCCCcccHHHHHHhhcccccccccccccccchhhHHHhhhhhHhh
Confidence              0000000 0             00    000                       0     0      00 0       


Q ss_pred             c---CCCcchhccHHHHHHHHHhcCC-C-Ce-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCchh
Q 014324           99 D---DNFNFRAAHWADLHGLLYNALP-P-EI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSS  172 (426)
Q Consensus        99 ~---~~~~~~~~~r~~l~~~L~~~~~-~-~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~  172 (426)
                      .   .....+.+++..+.+.|.+.+. . |+ ++++ +|+++..++++..+.|+   +.+|++  ++||+||+|||.+|.
T Consensus       180 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~Gv~i~~~-~V~~i~~~~~g~~~~v~---~~~G~~--i~ad~vI~A~G~~S~  253 (550)
T 2e4g_A          180 DGSKVTNYAWHFDAHLVADFLRRFATEKLGVRHVED-RVEHVQRDANGNIESVR---TATGRV--FDADLFVDCSGFRGL  253 (550)
T ss_dssp             TSCBCSCCEEEECHHHHHHHHHHHHHHHSCCEEEEC-CEEEEEECTTSCEEEEE---ETTSCE--EECSEEEECCGGGCC
T ss_pred             cCCCCCCcceEEcHHHHHHHHHHHHHhcCCcEEEEC-eEeEEEEcCCCCEEEEE---ECCCCE--EECCEEEECCCCchh
Confidence            0   0111245889999999988775 4 78 8999 99999875444345555   566754  899999999999999


Q ss_pred             hhhhhcCCCcccccc----eEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEEEecCCeeeEEEEEec
Q 014324          173 IRQSFLSDFKLRYSG----YCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELLNKRLNWVWYINQ  248 (426)
Q Consensus       173 vR~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (426)
                      +++..++.....+.+    .......+....    +.     ...+  .. ......+.++.+++|+++ ...+.+.+..
T Consensus       254 ~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~----~~-----~~~~--~~-~~~~~~~~g~~~~ipl~~-~~~~g~v~~~  320 (550)
T 2e4g_A          254 LINKAMEEPFLDMSDHLLNDSAVATQVPHDD----DA-----NGVE--PF-TSAIAMKSGWTWKIPMLG-RFGTGYVYSS  320 (550)
T ss_dssp             CCCCCTCCCEEECTTTCCCCEEEEEEEECCH----HH-----HCCC--SS-EEEEECSSEEEEEEECSS-EEEEEEEECT
T ss_pred             hHHHHhCCCcccccccccccceEEEeecccC----Cc-----ccCC--Cc-eeeeecCCceEEEccCCC-ccceEEEEec
Confidence            954433211111111    011111111110    00     0001  11 112234677888888876 3333333321


Q ss_pred             CCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcceEeeeeccCCCCccccccEEEeccccccCCCCCcch
Q 014324          249 PEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDPLKQIFWSNVVLIGDAAHPTTPHGLRS  328 (426)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~rv~LvGDAAh~~~P~~G~G  328 (426)
                      ..           .+.+...+.+....... +.+       ...... .+.....+++..+|++|||||||.++|+.|||
T Consensus       321 ~~-----------~~~~~~~~~l~~~~~~~-p~l-------~~~~~i-~~~~~~~~~~~~~rvvliGDAAh~~~P~~GqG  380 (550)
T 2e4g_A          321 RF-----------ATEDEAVREFCEMWHLD-PET-------QPLNRI-RFRVGRNRRAWVGNCVSIGTSSCFVEPLESTG  380 (550)
T ss_dssp             TT-----------SCHHHHHHHHHHHTTCC-TTT-------SCCEEE-ECCCEEESCSEETTEEECSTTTEECCGGGSCH
T ss_pred             CC-----------CChHHHHHHHHHhhCcC-ccc-------CCCceE-EecCCCccccccCCEEEEehhhcccCccchhh
Confidence            10           12222222222222211 111       111111 11122234456799999999999999999999


Q ss_pred             hhhhHHHHHHHHHHHHhhccccHHHHHHHHHHhhhhhHHHHHHHHHHhhh
Q 014324          329 TNMSILDAMVLGKSLEKWGVEGLLSALEEYQTVRLPVTSKQVLHSRRLGR  378 (426)
Q Consensus       329 ~~~ai~Da~~La~~L~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~  378 (426)
                      +|+|++||..|+++|...  ...+.+|+.|+++|++++..+.+.......
T Consensus       381 i~~a~~da~~La~~L~~~--~~~~~~l~~Y~~~~~~~~~~i~~~~~~~y~  428 (550)
T 2e4g_A          381 IYFVYAALYQLVKHFPDK--SLNPVLTARFNREIETMFDDTRDFIQAHFY  428 (550)
T ss_dssp             HHHHHHHHHHHHHTCCCT--TCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcccc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999998742  456789999999999999887776655443

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=99.96  E-value=1.6e-28  Score=238.57  Aligned_cols=326  Identities=13%  Similarity=-0.006  Sum_probs=181.9

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCC-CCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccc
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTG-SPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQN   84 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~-~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~   84 (426)
                      ++||+||||||+||++|+.|+++|++|+||||.+.+... .....+..+.+.++..++.+|+......   .........
T Consensus        22 ~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~~~~~~~g~~~~~~~~~~~~~~~~~~lg~~~~~~~---~~~~~~~~~   98 (430)
T 3ihm_A           22 KKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRKPDEYSGLRLLNTVAHNAVTVQREVALDVNEWPSE---EFGYFGHYY   98 (430)
T ss_dssp             -CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCCGGGSTTSCCCCCCCBCHHHHHHHHHTTCCCSCHH---HHCEEEEEE
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCChHhhcccccccchhccchhhhhhhhcChhhhhhh---cccccceeE
Confidence            369999999999999999999999999999998743211 1111123345667777777765311111   111100000


Q ss_pred             cccccccccccccccCCCcchhccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecE
Q 014324           85 QATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNL  162 (426)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~  162 (426)
                      .......+..  ..........+.+..+...|.+.+. .|+ +++..             ++     ..+.+....++|+
T Consensus        99 ~~~~~~~~~~--~~~~~~~~~~v~~~~l~~~L~~~~~~~Gv~v~~~~-------------v~-----~~~l~~~~~~ad~  158 (430)
T 3ihm_A           99 YVGGPQPMRF--YGDLKAPSRAVDYRLYQPMLMRALEARGGKFCYDA-------------VS-----AEDLEGLSEQYDL  158 (430)
T ss_dssp             EECSSSCEEE--EEEEEEEEBEECHHHHHHHHHHHHHHTTCEEEECC-------------CC-----GGGHHHHHTTSSE
T ss_pred             EECCCCcccc--chhcCCcceeecHHHHHHHHHHHHHHcCCEEEEEe-------------cc-----hhhhhhhcccCCE
Confidence            0001000000  0000123355778888888877665 465 44311             00     0111111126899


Q ss_pred             EEeccCCchhhhhhhcCCCcccc------cceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEEEec
Q 014324          163 LVAADGCLSSIRQSFLSDFKLRY------SGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELL  236 (426)
Q Consensus       163 vI~AdG~~S~vR~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (426)
                      ||+|||.+|.+|..........+      .....+.++.+ +                ......+......+..+.+|..
T Consensus       159 VV~AdG~~S~~~~~~~~~~~~~~~~p~r~~~~~~~~g~~~-~----------------~~~~~~~~~~~~~G~~~~~p~~  221 (430)
T 3ihm_A          159 LVVCTGKYALGKVFEKQSENSPFEKPQRALCVGLFKGIKE-A----------------PIRAVTMSFSPGHGELIEIPTL  221 (430)
T ss_dssp             EEECCCCTTGGGGSCBCGGGCCCSSCSSEEEEEEEESBCC-C----------------SSCCEEEEEETTTEEEEEEEEE
T ss_pred             EEECCCCcchHHhccCCCCCCcccCCCeeEEEEEEccCCC-C----------------CcCeeeeeecCCCcceEEeccc
Confidence            99999999999854321111111      11112222211 1                0011112222334556666653


Q ss_pred             --CCeeeEEEEEecCCCCcCCCcceec---cCHHHHHHHHHHHhhcccHHHHHHhhhcC--c----c-e----Eeeeecc
Q 014324          237 --NKRLNWVWYINQPEPIMKGNSVTMR---VSNDMIKNMHEEAEKVWLPEFVKVIKETK--E----P-F----INAMYDC  300 (426)
Q Consensus       237 --~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~-~----~~~~~~~  300 (426)
                        ++..++.++...+....  ..+...   .+.+...+.+.+....|.|.+.+++....  .    . .    .++. ..
T Consensus       222 ~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~  298 (430)
T 3ihm_A          222 SFNGMSTALVLENHIGSDL--EVLAHTKYDDDPRAFLDLMLEKLGKHHPSVAERIDPAEFDLANSSLDILQGGVVPA-FR  298 (430)
T ss_dssp             ETTEEEEEEEEEECTTSSS--GGGGTSCTTTCHHHHHHHHHHHHHHHCHHHHTTBCTTTCEESSSTTSEEEECCCCE-EB
T ss_pred             CCCcceEEEEEEecCCCcH--HHhccccCCCCHHHHHHHHHHHHHHhCccHHHHHhhchhccccCccceeecceeec-cc
Confidence              23444444444433211  111111   13333333333345567788877765543  1    1 1    1121 14


Q ss_pred             CCCCccccccEEE-eccccccCCCCCcchhhhhHHHHHHHHHHHHhhccccHHHHHHHHHHhhh-hhHHHHHHHHHHh
Q 014324          301 DPLKQIFWSNVVL-IGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTVRL-PVTSKQVLHSRRL  376 (426)
Q Consensus       301 ~p~~~~~~~rv~L-vGDAAh~~~P~~G~G~~~ai~Da~~La~~L~~~~~~~~~~~L~~Y~~~R~-~~~~~~~~~~~~~  376 (426)
                      .++++|..+|++| +|||||.++|+.|||+|+||+||.+|+++|....  +.+++|..|+.+|+ ++++...+.++.+
T Consensus       299 ~~~~~~~~~~~~ll~GDAah~~~p~~g~G~~~a~~da~~l~~~l~~~~--~~~~~~~~~~~~r~~~~~~~~~~~~~~~  374 (430)
T 3ihm_A          299 DGHATLNNGKTIIGLGDIQATVDPVLGQGANMASYAAWILGEEILAHS--VYDLRFSEHLERRRQDRVLCATRWTNFT  374 (430)
T ss_dssp             CSEEECTTSCEEEECGGGTEECCGGGCCHHHHHHHHHHHHHHHHHHCS--CCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccCCCCEEEEecCccccCCCchhhhHHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5667788899998 9999999999999999999999999999999863  47889999999998 6666666555544

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=99.90  E-value=5.4e-23  Score=202.89  Aligned_cols=142  Identities=14%  Similarity=0.054  Sum_probs=102.8

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccc
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQN   84 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~   84 (426)
                      ..+||+||||||+||++|+.|+++|++|+|||+.+.++.    .....+.+.+++.++.+|.  .+....          
T Consensus        91 ~~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~~~g~----~~~~~~~~~~~~~l~~~g~--~~~~~~----------  154 (497)
T 2bry_A           91 TNTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIKFSR----HNVLHLWPFTIHDLRALGA--KKFYGR----------  154 (497)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCSSCCC----CCEEECCHHHHHHHHTTTH--HHHCTT----------
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCeEEEEEeccccCC----CCcccCChhHHHHHHHcCC--cccccc----------
Confidence            458999999999999999999999999999999987642    2456678888888887765  211100          


Q ss_pred             cccccccccccccccCCCcchhccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEec-CCceEEEEEEecc-CCceEEEee
Q 014324           85 QATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALP-PEI-FLRGHQYLSFCISE-VKTTVTVKAKVLQ-TDEVIEIKG  160 (426)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~-~~~~v~v~~~~~~-~g~~~~~~~  160 (426)
                       +..             ..+..+++..+.+.|.+.+. .++ ++++++|++++.++ ++..+.|+++ .. +|+..++++
T Consensus       155 -~~~-------------~~~~~~~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~v~~~-~~~~g~~~~i~a  219 (497)
T 2bry_A          155 -FCT-------------GTLDHISIRQLQLLLLKVALLLGVEIHWGVKFTGLQPPPRKGSGWRAQLQ-PNPPAQLASYEF  219 (497)
T ss_dssp             -TTC-------------TTCCEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEECCCSTTCCBEEEEE-SCCCHHHHTCCB
T ss_pred             -ccc-------------cccccCCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEecCCCCEEEEEEE-ECCCCCEEEEEc
Confidence             000             01223567888888887665 478 99999999998642 2334555532 13 563334899


Q ss_pred             cEEEeccCCchhhhhhh
Q 014324          161 NLLVAADGCLSSIRQSF  177 (426)
Q Consensus       161 d~vI~AdG~~S~vR~~l  177 (426)
                      |+||+|||.+|.+|+..
T Consensus       220 d~VV~A~G~~S~~r~~~  236 (497)
T 2bry_A          220 DVLISAAGGKFVPEGFT  236 (497)
T ss_dssp             SEEEECCCTTCCCTTCE
T ss_pred             CEEEECCCCCccccccc
Confidence            99999999999999765

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=99.59  E-value=3.7e-14  Score=136.46  Aligned_cols=211  Identities=10%  Similarity=0.009  Sum_probs=105.0

Q ss_pred             cHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCch-hhhhhhcCCCccc
Q 014324          108 HWADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLS-SIRQSFLSDFKLR  184 (426)
Q Consensus       108 ~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S-~vR~~l~~~~~~~  184 (426)
                      +-..+.+.|.+.+. .|+ ++++++|+++..++ +..+.|+   ..+|   ++++|.||.|+|.+| .+++.+....+..
T Consensus       172 ~~~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~-~~~~~v~---~~~g---~~~a~~vV~a~G~~s~~l~~~~g~~~~~~  244 (405)
T 2gag_B          172 KHDHVAWAFARKANEMGVDIIQNCEVTGFIKDG-EKVTGVK---TTRG---TIHAGKVALAGAGHSSVLAEMAGFELPIQ  244 (405)
T ss_dssp             CHHHHHHHHHHHHHHTTCEEECSCCEEEEEESS-SBEEEEE---ETTC---CEEEEEEEECCGGGHHHHHHHHTCCCCEE
T ss_pred             CHHHHHHHHHHHHHHCCCEEEcCCeEEEEEEeC-CEEEEEE---eCCc---eEECCEEEECCchhHHHHHHHcCCCCCcc
Confidence            34456666666554 478 99999999998643 3334454   4566   389999999999998 6777664333222


Q ss_pred             -ccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEEEecCCeeeEEEEEecCCCCcCCCcceeccC
Q 014324          185 -YSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELLNKRLNWVWYINQPEPIMKGNSVTMRVS  263 (426)
Q Consensus       185 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (426)
                       +.+...   ..+  +..            +... ...  ...+...++.|.+++.+.+..........      ....+
T Consensus       245 ~~~~~~~---~~~--~~~------------~~~~-~~~--~~~~~~~y~~p~~~g~~~ig~~~~~~~~~------~~~~~  298 (405)
T 2gag_B          245 SHPLQAL---VSE--LFE------------PVHP-TVV--MSNHIHVYVSQAHKGELVMGAGIDSYNGY------GQRGA  298 (405)
T ss_dssp             EEEEEEE---EEE--EBC------------SCCC-SEE--EETTTTEEEEECTTSEEEEEEEECSSCCC------SSCCC
T ss_pred             ccceeEE---Eec--CCc------------cccC-ceE--EeCCCcEEEEEcCCCcEEEEeccCCCCcc------ccCCC
Confidence             111111   111  000            0000 111  12233455566666655554433211100      11122


Q ss_pred             HHHHHHHHHHHhhcccHHHHHHhhhcCcceEeeeeccCCCCccccccEEEecccc----ccCCCCCcchhhhhHHHHHHH
Q 014324          264 NDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDPLKQIFWSNVVLIGDAA----HPTTPHGLRSTNMSILDAMVL  339 (426)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~rv~LvGDAA----h~~~P~~G~G~~~ai~Da~~L  339 (426)
                      .+..+.+.+...+ ..|.+    ........|.-  ..|   ...++..++|++.    +...-+.|.|+..|..-|..|
T Consensus       299 ~~~~~~l~~~~~~-~~p~l----~~~~~~~~w~g--~~~---~t~d~~p~ig~~~~~~l~~~~G~~g~G~~~a~~~g~~l  368 (405)
T 2gag_B          299 FHVIQEQMAAAVE-LFPIF----ARAHVLRTWGG--IVD---TTMDASPIISKTPIQNLYVNCGWGTGGFKGTPGAGFTL  368 (405)
T ss_dssp             THHHHHHHHHHHH-HCGGG----GGCEECEEEEE--EEE---EETTSCCEEEECSSBTEEEEECCGGGCSTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-hCCcc----ccCCcceEEee--ccc---cCCCCCCEecccCCCCEEEEecCCCchhhHHHHHHHHH
Confidence            3334444332111 11211    11111112221  111   3447788899864    222345667888888888888


Q ss_pred             HHHHHhhccccHHHHHHHHHHhhhh
Q 014324          340 GKSLEKWGVEGLLSALEEYQTVRLP  364 (426)
Q Consensus       340 a~~L~~~~~~~~~~~L~~Y~~~R~~  364 (426)
                      ++.|......   ..+..|.-+|.+
T Consensus       369 a~~i~g~~~~---~~~~~~~~~R~~  390 (405)
T 2gag_B          369 AHTIANDEPH---ELNKPFSLERFE  390 (405)
T ss_dssp             HHHHHHTSCC---TTTTTSCSTHHH
T ss_pred             HHHHhCCCCC---ccccccCcchhc
Confidence            8877654211   235667666643

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=99.57  E-value=5.8e-14  Score=133.98  Aligned_cols=208  Identities=12%  Similarity=0.019  Sum_probs=107.3

Q ss_pred             hccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCchh-hhhhhcCCCc
Q 014324          106 AAHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSS-IRQSFLSDFK  182 (426)
Q Consensus       106 ~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~-vR~~l~~~~~  182 (426)
                      .++...+.+.|.+.+. .|+ ++++++|++++.++  ..+.|+   ..+|   +++||.||.|+|.+|. +.+.+....+
T Consensus       160 ~~~~~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~--~~~~v~---~~~g---~~~a~~vV~A~G~~s~~l~~~~~~~~~  231 (382)
T 1ryi_A          160 HVEPYFVCKAYVKAAKMLGAEIFEHTPVLHVERDG--EALFIK---TPSG---DVWANHVVVASGVWSGMFFKQLGLNNA  231 (382)
T ss_dssp             BCCHHHHHHHHHHHHHHTTCEEETTCCCCEEECSS--SSEEEE---ETTE---EEEEEEEEECCGGGTHHHHHHTTCCCC
T ss_pred             EEcHHHHHHHHHHHHHHCCCEEEcCCcEEEEEEEC--CEEEEE---cCCc---eEEcCEEEECCChhHHHHHHhcCCCCc
Confidence            3555677777777654 477 99999999998543  345554   4455   3899999999999986 7666532222


Q ss_pred             cc-ccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEEEecCCeeeEEEEEecCCCCcCCCcceec
Q 014324          183 LR-YSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELLNKRLNWVWYINQPEPIMKGNSVTMR  261 (426)
Q Consensus       183 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (426)
                      .. ..++..   .++....              ... .. ++ .+  ..+++|.+++...+........       ....
T Consensus       232 ~~~~~g~~~---~~~~~~~--------------~~~-~~-~~-~~--~~~~~p~~~g~~~vG~~~~~~~-------~~~~  282 (382)
T 1ryi_A          232 FLPVKGECL---SVWNDDI--------------PLT-KT-LY-HD--HCYIVPRKSGRLVVGATMKPGD-------WSET  282 (382)
T ss_dssp             CEEEEEEEE---EEECCSS--------------CCC-SE-EE-ET--TEEEEECTTSEEEEECCCEETC-------CCCS
T ss_pred             eeccceEEE---EECCCCC--------------Ccc-ce-EE-cC--CEEEEEcCCCeEEEeecccccC-------CCCC
Confidence            11 111111   1111100              000 11 11 11  3456666555444332211110       0112


Q ss_pred             cCHHHHHHHHHHHhhcccHHHHHHhhhcCcceEeeeeccCCCCccccccEEEecccc-----ccCCCCCcchhhhhHHHH
Q 014324          262 VSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDPLKQIFWSNVVLIGDAA-----HPTTPHGLRSTNMSILDA  336 (426)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~rv~LvGDAA-----h~~~P~~G~G~~~ai~Da  336 (426)
                      .+.+..+.+++...+ +.|.+.    .......|.-  ..|   +..++..++|++.     +...+++|.|+..|...|
T Consensus       283 ~~~~~~~~l~~~~~~-~~p~l~----~~~~~~~w~g--~~~---~t~d~~p~ig~~~~~~~l~~~~G~~g~G~~~a~~~g  352 (382)
T 1ryi_A          283 PDLGGLESVMKKAKT-MLPAIQ----NMKVDRFWAG--LRP---GTKDGKPYIGRHPEDSRILFAAGHFRNGILLAPATG  352 (382)
T ss_dssp             CCHHHHHHHHHHHHH-HCGGGG----GSEEEEEEEE--EEE---ECSSSCCEEEEETTEEEEEEEECCSSCTTTTHHHHH
T ss_pred             CCHHHHHHHHHHHHH-hCCCcC----CCceeeEEEE--ecc---cCCCCCcEeccCCCcCCEEEEEcCCcchHHHhHHHH
Confidence            233444444332221 112111    1111112211  111   2346677788763     446778999999999999


Q ss_pred             HHHHHHHHhhccccHHHHH-HHHHHhhh
Q 014324          337 MVLGKSLEKWGVEGLLSAL-EEYQTVRL  363 (426)
Q Consensus       337 ~~La~~L~~~~~~~~~~~L-~~Y~~~R~  363 (426)
                      ..|++.|.... ..  ..+ ..|.-.|.
T Consensus       353 ~~la~~i~~~~-~~--~~~~~~~~~~Rf  377 (382)
T 1ryi_A          353 ALISDLIMNKE-VN--QDWLHAFRIDRK  377 (382)
T ss_dssp             HHHHHHHTTCC-CC--HHHHHHTCSCCC
T ss_pred             HHHHHHHhCCC-CC--chhhcCCChhhc
Confidence            99999997643 11  123 66655553

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=99.52  E-value=4.5e-14  Score=128.42  Aligned_cols=36  Identities=39%  Similarity=0.563  Sum_probs=34.5

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP   42 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~   42 (426)
                      +||+|||||||||+||+.|+++|++|+||||++.++
T Consensus         3 ~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~G   38 (336)
T 3kkj_A            3 VPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGSG   38 (336)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCC
Confidence            799999999999999999999999999999998874

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=99.50  E-value=2.7e-12  Score=126.73  Aligned_cols=68  Identities=16%  Similarity=-0.039  Sum_probs=49.5

Q ss_pred             ccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCchh-hhhh
Q 014324          107 AHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSS-IRQS  176 (426)
Q Consensus       107 ~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~-vR~~  176 (426)
                      ++...+...|.+.+. .|+ ++.+++|+++..++  ..+.|++++..+|+..+++||.||.|+|.+|. +++.
T Consensus       146 v~~~~l~~~l~~~a~~~Gv~i~~~~~V~~l~~~~--~~~~V~~~d~~~G~~~~i~A~~VV~AtG~~s~~l~~~  216 (501)
T 2qcu_A          146 VDDARLVLANAQMVVRKGGEVLTRTRATSARREN--GLWIVEAEDIDTGKKYSWQARGLVNATGPWVKQFFDD  216 (501)
T ss_dssp             ECHHHHHHHHHHHHHHTTCEEECSEEEEEEEEET--TEEEEEEEETTTCCEEEEEESCEEECCGGGHHHHHHH
T ss_pred             EcHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEeC--CEEEEEEEECCCCCEEEEECCEEEECCChhHHHHHHH
Confidence            456667777766554 588 99999999998754  34556544335677666999999999999986 5553

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.50  E-value=7.4e-13  Score=126.31  Aligned_cols=38  Identities=42%  Similarity=0.657  Sum_probs=34.4

Q ss_pred             CCCCCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccC
Q 014324            1 MEKKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAG   39 (426)
Q Consensus         1 m~~~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~   39 (426)
                      ||+ .++||+|||||++|+++|+.|+++|++|+|+|+..
T Consensus         1 Mm~-~~~dVvIIGgGi~Gl~~A~~La~~G~~V~lle~~~   38 (382)
T 1y56_B            1 MLP-EKSEIVVIGGGIVGVTIAHELAKRGEEVTVIEKRF   38 (382)
T ss_dssp             -CC-SBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCC-CcCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            664 46899999999999999999999999999999984

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=99.47  E-value=1.1e-12  Score=124.27  Aligned_cols=67  Identities=7%  Similarity=0.044  Sum_probs=48.7

Q ss_pred             ccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCch-hhhhhh
Q 014324          107 AHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLS-SIRQSF  177 (426)
Q Consensus       107 ~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S-~vR~~l  177 (426)
                      ++...+.+.|.+.++ .|+ ++++++|++++.++++ .+.|+   ..+|+..+++||.||.|+|.+| .+.+.+
T Consensus       147 ~~~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~-~~~v~---~~~g~~~~~~a~~VV~A~G~~s~~l~~~~  216 (369)
T 3dme_A          147 VDSHALMLAYQGDAESDGAQLVFHTPLIAGRVRPEG-GFELD---FGGAEPMTLSCRVLINAAGLHAPGLARRI  216 (369)
T ss_dssp             ECHHHHHHHHHHHHHHTTCEEECSCCEEEEEECTTS-SEEEE---ECTTSCEEEEEEEEEECCGGGHHHHHHTE
T ss_pred             ECHHHHHHHHHHHHHHCCCEEECCCEEEEEEEcCCc-eEEEE---ECCCceeEEEeCEEEECCCcchHHHHHHh
Confidence            445667777777655 478 9999999999975432 35555   5677655699999999999998 455554

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=99.46  E-value=2.6e-12  Score=131.64  Aligned_cols=59  Identities=15%  Similarity=0.109  Sum_probs=44.8

Q ss_pred             ccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCchh
Q 014324          107 AHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSS  172 (426)
Q Consensus       107 ~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~  172 (426)
                      ++...+.+.|.+.+. .|+ |+++++|+++..+++  .|.|+   ..+|.+  ++||.||.|+|.+|.
T Consensus       414 v~p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~~--~v~V~---t~~G~~--i~Ad~VVlAtG~~s~  474 (676)
T 3ps9_A          414 LCPAELTRNVLELAQQQGLQIYYQYQLQNFSRKDD--CWLLN---FAGDQQ--ATHSVVVLANGHQIS  474 (676)
T ss_dssp             ECHHHHHHHHHHHHHHTTCEEEESCCEEEEEEETT--EEEEE---ETTSCE--EEESEEEECCGGGGG
T ss_pred             eCHHHHHHHHHHHHHhCCCEEEeCCeeeEEEEeCC--eEEEE---ECCCCE--EECCEEEECCCcchh
Confidence            445666677776654 488 999999999997544  46665   556664  899999999999986

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=99.44  E-value=8.3e-12  Score=119.25  Aligned_cols=37  Identities=16%  Similarity=0.358  Sum_probs=34.4

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP   42 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~   42 (426)
                      ++||+|||||++|+++|+.|+++|++|+|+|+.....
T Consensus         3 ~~dvvIIGaG~~Gl~~A~~La~~G~~V~vie~~~~~~   39 (389)
T 2gf3_A            3 HFDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPH   39 (389)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSSC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCC
Confidence            4899999999999999999999999999999987654

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=99.44  E-value=2.1e-12  Score=122.93  Aligned_cols=63  Identities=17%  Similarity=0.152  Sum_probs=46.2

Q ss_pred             ccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCchh-hhhhh
Q 014324          107 AHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSS-IRQSF  177 (426)
Q Consensus       107 ~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~-vR~~l  177 (426)
                      ++...+.+.|.+.+. .|+ ++++++|++++.+++  .+.|+   +.+|   +++||.||.|+|.+|. +.+.+
T Consensus       151 ~~~~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~--~~~V~---t~~g---~i~a~~VV~A~G~~s~~l~~~~  216 (381)
T 3nyc_A          151 IDTDALHQGYLRGIRRNQGQVLCNHEALEIRRVDG--AWEVR---CDAG---SYRAAVLVNAAGAWCDAIAGLA  216 (381)
T ss_dssp             ECHHHHHHHHHHHHHHTTCEEESSCCCCEEEEETT--EEEEE---CSSE---EEEESEEEECCGGGHHHHHHHH
T ss_pred             ECHHHHHHHHHHHHHHCCCEEEcCCEEEEEEEeCC--eEEEE---eCCC---EEEcCEEEECCChhHHHHHHHh
Confidence            455666666766654 488 999999999987544  46665   5555   3899999999999984 55554

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=99.43  E-value=3.7e-12  Score=130.61  Aligned_cols=59  Identities=10%  Similarity=0.013  Sum_probs=43.4

Q ss_pred             ccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCc-eEEEeecEEEeccCCchh
Q 014324          107 AHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDE-VIEIKGNLLVAADGCLSS  172 (426)
Q Consensus       107 ~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~-~~~~~~d~vI~AdG~~S~  172 (426)
                      ++...+.+.|.+.+. .|+ |+++++|++++.+++  .|.|+   ..+|. .  ++||.||.|+|.+|.
T Consensus       409 v~p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~~--~v~V~---t~~G~~~--i~Ad~VVlAtG~~s~  470 (689)
T 3pvc_A          409 LCPSDLTHALMMLAQQNGMTCHYQHELQRLKRIDS--QWQLT---FGQSQAA--KHHATVILATGHRLP  470 (689)
T ss_dssp             ECHHHHHHHHHHHHHHTTCEEEESCCEEEEEECSS--SEEEE---EC-CCCC--EEESEEEECCGGGTT
T ss_pred             ECHHHHHHHHHHHHHhCCCEEEeCCeEeEEEEeCC--eEEEE---eCCCcEE--EECCEEEECCCcchh
Confidence            344666666766654 488 999999999997544  36655   45664 4  899999999999976

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=99.43  E-value=1.3e-11  Score=123.37  Aligned_cols=71  Identities=23%  Similarity=0.071  Sum_probs=51.0

Q ss_pred             ccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCch-hhhhhhc
Q 014324          107 AHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLS-SIRQSFL  178 (426)
Q Consensus       107 ~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S-~vR~~l~  178 (426)
                      ++...+...|.+.+. .|+ ++.+++|+++..+++ ..+.|++.+..+|+..+++||.||.|+|.+| .+++.+.
T Consensus       167 vd~~~l~~~L~~~a~~~G~~i~~~~~V~~l~~~~g-~v~gV~~~d~~tg~~~~i~A~~VV~AaG~~s~~l~~~~g  240 (561)
T 3da1_A          167 TDDARLTLEIMKEAVARGAVALNYMKVESFIYDQG-KVVGVVAKDRLTDTTHTIYAKKVVNAAGPWVDTLREKDR  240 (561)
T ss_dssp             CCHHHHHHHHHHHHHHTTCEEEESEEEEEEEEETT-EEEEEEEEETTTCCEEEEEEEEEEECCGGGHHHHHHTTT
T ss_pred             EcHHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCC-eEEEEEEEEcCCCceEEEECCEEEECCCcchHHHHHhcC
Confidence            445566666666554 588 999999999987533 2234665555567767799999999999998 5777654

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=99.42  E-value=6.2e-14  Score=134.70  Aligned_cols=144  Identities=18%  Similarity=0.217  Sum_probs=84.2

Q ss_pred             CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCC-Ccce-ecc-----Ch---------hHHHHHHHHhcC
Q 014324            4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSP-TGAG-LGL-----DR---------PAQRIIQSWLNG   67 (426)
Q Consensus         4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~-~~~~-~~l-----~~---------~~~~~l~~~~~~   67 (426)
                      +.++||+|||||++|+++|+.|+++|++|+|+|+.+.++.... .|.+ ..+     .+         .....+.++...
T Consensus        25 ~~~~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~~~g~~~~~sGgg~~n~t~~~~~~~~~~~~~~~~~~~~l~~~~~~  104 (417)
T 3v76_A           25 AEKQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARAPGEKIRISGGGRCNFTNIHASPRNFLSGNPHFCKSALARYRPQ  104 (417)
T ss_dssp             ---CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHSGGGTCEEEETTCSGGGEEESSTTTTHHHHHHSCHH
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeEEcCCCceeccCCCCCHHHHhhcCHHHHHHHHHhcCHH
Confidence            3568999999999999999999999999999999987642100 0000 000     00         011111111110


Q ss_pred             C-chhhhccCcceeeccccccccccccccccccCCCcchhccHHHHHHHHHhcCCC-Ce-eEeeeeEEEEEEecCCceEE
Q 014324           68 R-PHLLHLATVPLTIDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPP-EI-FLRGHQYLSFCISEVKTTVT  144 (426)
Q Consensus        68 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~-~~-i~~~~~v~~~~~~~~~~~v~  144 (426)
                      . .+.+...+.+..                .......+....+..+.+.|.+.+++ |+ ++++++|+++..+++  .+.
T Consensus       105 ~~~~~~~~~Gi~~~----------------~~~~g~~~~~~~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~~--~~~  166 (417)
T 3v76_A          105 DFVALVERHGIGWH----------------EKTLGQLFCDHSAKDIIRMLMAEMKEAGVQLRLETSIGEVERTAS--GFR  166 (417)
T ss_dssp             HHHHHHHHTTCCEE----------------ECSTTEEEESSCHHHHHHHHHHHHHHHTCEEECSCCEEEEEEETT--EEE
T ss_pred             HHHHHHHHcCCCcE----------------EeeCCEEeeCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCC--EEE
Confidence            0 000011111100                00011112234556777778777654 88 999999999986544  466


Q ss_pred             EEEEeccCCceEEEeecEEEeccCCch
Q 014324          145 VKAKVLQTDEVIEIKGNLLVAADGCLS  171 (426)
Q Consensus       145 v~~~~~~~g~~~~~~~d~vI~AdG~~S  171 (426)
                      |+   ..+|   +++||.||.|+|.+|
T Consensus       167 V~---~~~g---~i~ad~VIlAtG~~S  187 (417)
T 3v76_A          167 VT---TSAG---TVDAASLVVASGGKS  187 (417)
T ss_dssp             EE---ETTE---EEEESEEEECCCCSS
T ss_pred             EE---ECCc---EEEeeEEEECCCCcc
Confidence            65   4555   489999999999998

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=99.40  E-value=3.9e-12  Score=117.30  Aligned_cols=144  Identities=14%  Similarity=0.179  Sum_probs=91.1

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHc--CCcEEEEcccCCCCCCCCCc----ceeccChhHHHHHHHHhcCCchhhhccCcc
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRA--GWDVVVLEKAGGPPTGSPTG----AGLGLDRPAQRIIQSWLNGRPHLLHLATVP   78 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~--G~~v~v~E~~~~~~~~~~~~----~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~   78 (426)
                      ..+||+||||||+|+++|+.|+++  |++|+|+|+...++.....+    ....+.+...++++.+|+...    ..   
T Consensus        78 ~~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GGg~~~~g~~~~~~~~~~~~~~~L~~~Gv~~~----~~---  150 (344)
T 3jsk_A           78 AETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGAWLGGQLFSAMVMRKPADVFLDEVGVPYE----DE---  150 (344)
T ss_dssp             HBCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCTTTTCCBTTCCCEEEETTTHHHHHHHTCCCE----EC---
T ss_pred             CcCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCCccccCCccchhhhcchHHHHHHHHcCCccc----cc---
Confidence            358999999999999999999998  99999999998765321000    112233555667777665210    00   


Q ss_pred             eeeccccccccccccccccccCCCcchhccHHHHHHHHHhcC-C-CCe-eEeeeeEEEEEEecC----------------
Q 014324           79 LTIDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNAL-P-PEI-FLRGHQYLSFCISEV----------------  139 (426)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~-~-~~~-i~~~~~v~~~~~~~~----------------  139 (426)
                                +.   .         ....+..++.+.|.+.+ . .++ ++++++++++..+++                
T Consensus       151 ----------G~---~---------~~~~~~~d~~~~L~~~a~~~~gV~i~~~~~V~dLi~~~d~~~~~~~~~~g~~~~~  208 (344)
T 3jsk_A          151 ----------GD---Y---------VVVKHAALFTSTVLSKVLQRPNVKLFNATTVEDLITRKHHAESSSSSDDGEAEDE  208 (344)
T ss_dssp             ----------SS---E---------EEESCHHHHHHHHHHHHHTCTTEEEEETEEEEEEEEEEC----------------
T ss_pred             ----------CC---e---------EEEecHHHHHHHHHHHHHhCCCCEEEeCCEEEEEEecCCcccccccccccccccC
Confidence                      00   0         00112344556666544 3 488 999999999987552                


Q ss_pred             C-ceEE-EEEEec---cCC------ceEEEeecEEEeccCCchhhhhhh
Q 014324          140 K-TTVT-VKAKVL---QTD------EVIEIKGNLLVAADGCLSSIRQSF  177 (426)
Q Consensus       140 ~-~~v~-v~~~~~---~~g------~~~~~~~d~vI~AdG~~S~vR~~l  177 (426)
                      + ..|. |.....   .+|      +..+++|++||+|||+.|++++.+
T Consensus       209 g~~rV~GVv~~~~~v~~~g~~~~~~d~~~i~Ak~VV~ATG~~s~v~~~~  257 (344)
T 3jsk_A          209 AKVRIAGVVTNWTLVSMHHDDQSAMDPNTINAPVIISTTGHDGPFGAFS  257 (344)
T ss_dssp             CCEEEEEEEEEEHHHHTTSSSSSCCBCEEEECSEEEECCCSSSSSSCHH
T ss_pred             CCceEeEEEeeeeeeeccCCcccccCceEEEcCEEEECCCCCchhhHHH
Confidence            1 1222 222111   122      335699999999999999987775

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=99.40  E-value=1.7e-12  Score=118.41  Aligned_cols=143  Identities=15%  Similarity=0.208  Sum_probs=89.4

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHc-CCcEEEEcccCCCCCCCCC-cc---eeccChhHHHHHHHHhcCCchhhhccCcce
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRA-GWDVVVLEKAGGPPTGSPT-GA---GLGLDRPAQRIIQSWLNGRPHLLHLATVPL   79 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~-G~~v~v~E~~~~~~~~~~~-~~---~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~   79 (426)
                      ..+||+||||||+|+++|+.|+++ |.+|+|+||.+.+...... +.   .+.+.+...++++.+|..           .
T Consensus        38 ~~~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~gg~~~~~~~~~~~~~~~~~~~~~l~~~G~~-----------~  106 (284)
T 1rp0_A           38 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVA-----------Y  106 (284)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCC-----------C
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCCCceecCCcchHHHHcCcHHHHHHHHcCCC-----------c
Confidence            457999999999999999999997 9999999999876431110 00   111223344555555441           0


Q ss_pred             eeccccccccccccccccccCCCcchhccHHHHHHHHHhcC-C-CCe-eEeeeeEEEEEEecCCceEEEEEEec----c-
Q 014324           80 TIDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNAL-P-PEI-FLRGHQYLSFCISEVKTTVTVKAKVL----Q-  151 (426)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~-~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~----~-  151 (426)
                      ..      .+.            .....+...+...|.+.+ + .|+ ++++++|+++..+++. ...+.+...    . 
T Consensus       107 ~~------~~~------------~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~~~~-v~gv~~~~~~~~~~~  167 (284)
T 1rp0_A          107 DE------QDT------------YVVVKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNR-VGGVVTNWALVAQNH  167 (284)
T ss_dssp             EE------CSS------------EEEESCHHHHHHHHHHHHHTSTTEEEEETEEEEEEEEETTE-EEEEEEEEHHHHTCT
T ss_pred             cc------CCC------------EEEecCHHHHHHHHHHHHHhcCCCEEEcCcEEEEEEecCCe-EEEEEEecccccccc
Confidence            00      000            000113455655566544 3 488 9999999999865332 112332211    1 


Q ss_pred             -C---CceEEEeecEEEeccCCchhhhhhh
Q 014324          152 -T---DEVIEIKGNLLVAADGCLSSIRQSF  177 (426)
Q Consensus       152 -~---g~~~~~~~d~vI~AdG~~S~vR~~l  177 (426)
                       +   |+..+++||.||.|+|.+|.++...
T Consensus       168 ~~g~~g~~~~i~ad~VV~AtG~~s~~~~~~  197 (284)
T 1rp0_A          168 HTQSCMDPNVMEAKIVVSSCGHDGPFGATG  197 (284)
T ss_dssp             TTSSCCCCEEEEEEEEEECCCSSSTTTTHH
T ss_pred             CccccCceEEEECCEEEECCCCchHHHHHH
Confidence             2   3445699999999999999998764

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=99.39  E-value=2.4e-12  Score=125.35  Aligned_cols=162  Identities=13%  Similarity=0.069  Sum_probs=88.6

Q ss_pred             CCCCCCccEEEEcCChHHHHHHHHHHHcCC--cEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCch------hh
Q 014324            1 MEKKEKGKAVIVGGSIAGISCAHALLRAGW--DVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPH------LL   72 (426)
Q Consensus         1 m~~~~~~~V~IvGaG~aGl~~A~~L~~~G~--~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~------~~   72 (426)
                      |+.+..+||+||||||+||++|..|+++|+  +|+|||+.+.++..      +...+...   ..+.+...+      .+
T Consensus         1 M~~~~~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~GG~------~~~~~~~~---~~~~ip~~~~~~~~~~~   71 (447)
T 2gv8_A            1 MCLPTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGV------WNYTSTLS---NKLPVPSTNPILTTEPI   71 (447)
T ss_dssp             --CCSCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTT------CSCCSCCC---SCCCSSBCCTTCCCCCB
T ss_pred             CCCCCCCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCCCCe------ecCCCCCC---ccccccccccccccccc
Confidence            666677999999999999999999999999  99999998775421      10000000   000000000      00


Q ss_pred             hc----cCcceeecccccccc--cccccccc-ccCCCcchhccHHHHHHHHHhcCCC-Ce-eEeeeeEEEEEEecCCceE
Q 014324           73 HL----ATVPLTIDQNQATDN--AKVTRTLA-RDDNFNFRAAHWADLHGLLYNALPP-EI-FLRGHQYLSFCISEVKTTV  143 (426)
Q Consensus        73 ~~----~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~r~~l~~~L~~~~~~-~~-i~~~~~v~~~~~~~~~~~v  143 (426)
                      ..    ..+.... +......  ........ .........+++..+.++|.+.+.. +. ++++++|++++..+  ..+
T Consensus        72 ~~g~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~i~~~t~V~~v~~~~--~~~  148 (447)
T 2gv8_A           72 VGPAALPVYPSPL-YRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKD--GSW  148 (447)
T ss_dssp             CCSSSCCBCCCCC-CTTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEET--TEE
T ss_pred             ccccccCCccCch-hhhhccCCCHHHhccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCeEEeCCEEEEEEeCC--CeE
Confidence            00    0000000 0000000  00000000 0000011235677888888776654 55 88999999998643  356


Q ss_pred             EEEEEeccCCc-eEEEeecEEEeccCCchhhh
Q 014324          144 TVKAKVLQTDE-VIEIKGNLLVAADGCLSSIR  174 (426)
Q Consensus       144 ~v~~~~~~~g~-~~~~~~d~vI~AdG~~S~vR  174 (426)
                      +|++.+..+|+ ..++++|.||.|+|.+|.-+
T Consensus       149 ~V~~~~~~~G~~~~~~~~d~VVvAtG~~s~p~  180 (447)
T 2gv8_A          149 VVTYKGTKAGSPISKDIFDAVSICNGHYEVPY  180 (447)
T ss_dssp             EEEEEESSTTCCEEEEEESEEEECCCSSSSBC
T ss_pred             EEEEeecCCCCeeEEEEeCEEEECCCCCCCCC
Confidence            66654433466 44589999999999987543

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=99.36  E-value=9e-13  Score=128.32  Aligned_cols=164  Identities=18%  Similarity=0.165  Sum_probs=87.6

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCC-CCcce-eccCh--hHHHHHHHHhcCCchhhhc----cC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGS-PTGAG-LGLDR--PAQRIIQSWLNGRPHLLHL----AT   76 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~-~~~~~-~~l~~--~~~~~l~~~~~~~~~~~~~----~~   76 (426)
                      .++||+|||||++|+++|+.|+++|.+|+|+||.+.++... ..+.+ ..+..  ...+++..+... ...+..    ..
T Consensus        25 ~~~dVvIIGgG~aGl~aA~~la~~G~~V~llEk~~~~g~~~~~sg~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  103 (447)
T 2i0z_A           25 MHYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGN-GRFLYSAFSIFN  103 (447)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBT-GGGGHHHHHHSC
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHCCCCEEEEECCCCCCceeEEeCCCceeccCcccHHHHHHHhccC-hHHHHHHHHhcC
Confidence            45899999999999999999999999999999988754210 00101 00110  011222222110 000000    00


Q ss_pred             cceeeccccccccccccccccccCCCcchhccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCc
Q 014324           77 VPLTIDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDE  154 (426)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~  154 (426)
                      ......+. ...+..+.. ......++ .......+.+.|.+.++ .|+ ++++++|+++..++ +..+.|+   ..+|+
T Consensus       104 ~~~~~~~~-~~~G~~~~~-~~~g~~~p-~~~~~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~~-~~v~~V~---~~~G~  176 (447)
T 2i0z_A          104 NEDIITFF-ENLGVKLKE-EDHGRMFP-VSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYEN-GQTKAVI---LQTGE  176 (447)
T ss_dssp             HHHHHHHH-HHTTCCEEE-CGGGEEEE-TTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEET-TEEEEEE---ETTCC
T ss_pred             HHHHHHHH-HhcCCceEE-eeCCEEEC-CCCCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEecC-CcEEEEE---ECCCC
Confidence            00000000 000000000 00000000 01123566666766554 488 99999999998643 3225555   45675


Q ss_pred             eEEEeecEEEeccCCch-----------hhhhhhc
Q 014324          155 VIEIKGNLLVAADGCLS-----------SIRQSFL  178 (426)
Q Consensus       155 ~~~~~~d~vI~AdG~~S-----------~vR~~l~  178 (426)
                      .  ++||.||.|+|.+|           .+++.++
T Consensus       177 ~--i~Ad~VVlAtGg~s~~~~g~tG~g~~la~~~G  209 (447)
T 2i0z_A          177 V--LETNHVVIAVGGKSVPQTGSTGDGYAWAEKAG  209 (447)
T ss_dssp             E--EECSCEEECCCCSSSGGGSCSSHHHHHHHHTT
T ss_pred             E--EECCEEEECCCCCcCCCCCCCcHHHHHHHHCC
Confidence            3  89999999999999           7777664

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=99.36  E-value=5.9e-11  Score=113.73  Aligned_cols=37  Identities=30%  Similarity=0.381  Sum_probs=34.6

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP   42 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~   42 (426)
                      .+||+|||||++|+++|+.|+++|++|+|+||.....
T Consensus         4 ~~DVvIIGaG~~Gl~~A~~La~~G~~V~vlE~~~~~~   40 (397)
T 2oln_A            4 SYDVVVVGGGPVGLATAWQVAERGHRVLVLERHTFFN   40 (397)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCC
Confidence            4899999999999999999999999999999998654

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=99.35  E-value=4.4e-12  Score=127.12  Aligned_cols=164  Identities=16%  Similarity=0.134  Sum_probs=92.3

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCC-CcceeccChhHHHHHHHHhcCC---------------
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSP-TGAGLGLDRPAQRIIQSWLNGR---------------   68 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~-~~~~~~l~~~~~~~l~~~~~~~---------------   68 (426)
                      .++||+|||||++||++|+.|+++|.+|+||||.+.++..+. .+.++....  ....+.++...               
T Consensus       120 ~~~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~s~gg~~~~~--~~~~~~~g~~ds~~~~~~~~~~~~~~  197 (566)
T 1qo8_A          120 ETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAVG--TKQQTAHGVEDKVEWFIEDAMKGGRQ  197 (566)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTGGGCCSCEECSS--CHHHHHTTCCCCHHHHHHHHHHHTTT
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcccccCceeEccC--CHHHHHhCCCCCHHHHHHHHHHhcCC
Confidence            458999999999999999999999999999999998754221 122222111  11122222100               


Q ss_pred             -----------------chhhhccCcceeeccccccccccccccccccCCCcchhccHHHHHHHHHhcCC-CCe-eEeee
Q 014324           69 -----------------PHLLHLATVPLTIDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALP-PEI-FLRGH  129 (426)
Q Consensus        69 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~  129 (426)
                                       .+.+.+.+.++..  .....+..+.....    .....+....+.+.|.+.+. .|+ |++++
T Consensus       198 ~~~~~~~~~~~~~~~~~i~~l~~~Gv~~~~--~~~~~g~~~~r~~~----~~~~~~~~~~l~~~L~~~~~~~gv~i~~~~  271 (566)
T 1qo8_A          198 QNDIKLVTILAEQSADGVQWLESLGANLDD--LKRSGGARVDRTHR----PHGGKSSGPEIIDTLRKAAKEQGIDTRLNS  271 (566)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHHHHTTCCCCE--EECCTTCSSCCEEE----CSSSSCHHHHHHHHHHHHHHHTTCCEECSE
T ss_pred             CCCHHHHHHHHhccHHHHHHHHhcCCcccc--ccccCCCCCCceee----cCCCCCCHHHHHHHHHHHHHhcCCEEEeCC
Confidence                             0000111111100  00000000000000    00001234567777776654 488 99999


Q ss_pred             eEEEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCchhhhhhh
Q 014324          130 QYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSIRQSF  177 (426)
Q Consensus       130 ~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~vR~~l  177 (426)
                      +|+++..++++..+.|++. ..+|+..++++|.||.|+|.+|..|+.+
T Consensus       272 ~v~~l~~~~~g~v~Gv~~~-~~~g~~~~i~A~~VVlAtGg~s~~~~~~  318 (566)
T 1qo8_A          272 RVVKLVVNDDHSVVGAVVH-GKHTGYYMIGAKSVVLATGGYGMNKEMI  318 (566)
T ss_dssp             EEEEEEECTTSBEEEEEEE-ETTTEEEEEEEEEEEECCCCCTTCHHHH
T ss_pred             EEEEEEECCCCcEEEEEEE-eCCCcEEEEEcCEEEEecCCcccCHHHH
Confidence            9999987542322224432 2477766799999999999999876654

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=99.35  E-value=3.3e-12  Score=124.14  Aligned_cols=42  Identities=33%  Similarity=0.452  Sum_probs=37.5

Q ss_pred             CCCCCCccEEEEcCChHHHHHHHHHHHcCC-cEEEEcccCCCC
Q 014324            1 MEKKEKGKAVIVGGSIAGISCAHALLRAGW-DVVVLEKAGGPP   42 (426)
Q Consensus         1 m~~~~~~~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~~~   42 (426)
                      |+.+.++||+|||||++|+++|+.|+++|+ +|+|+||...+.
T Consensus         1 M~~~~~~dVvIIGgG~aGlsaA~~La~~G~~~V~vlE~~~~~~   43 (438)
T 3dje_A            1 MAVTKSSSLLIVGAGTWGTSTALHLARRGYTNVTVLDPYPVPS   43 (438)
T ss_dssp             -CCCTTSCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSCSSC
T ss_pred             CCCCCCCCEEEECCCHHHHHHHHHHHHcCCCcEEEEeCCCCCC
Confidence            665567999999999999999999999999 999999998765

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=99.34  E-value=7.9e-12  Score=125.48  Aligned_cols=162  Identities=17%  Similarity=0.133  Sum_probs=90.0

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCC-CcceeccChhHHHHHHHHhcCC---------------
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSP-TGAGLGLDRPAQRIIQSWLNGR---------------   68 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~-~~~~~~l~~~~~~~l~~~~~~~---------------   68 (426)
                      .++||+|||||++||++|+.|+++|.+|+||||.+.++..+. .+.++.....  ...+++++..               
T Consensus       125 ~~~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~a~gg~~~~~~--~~~~~~g~~ds~~~~~~~~~~~g~~  202 (571)
T 1y0p_A          125 DTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWT--DQQKAKKITDSPELMFEDTMKGGQN  202 (571)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGGGCCSCEECSSC--HHHHHTTCCCCHHHHHHHHHHHTTT
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchhhcCceEEeCCC--HHHHHhCCCCCHHHHHHHHHHhcCC
Confidence            468999999999999999999999999999999988753221 1222322111  1122222100               


Q ss_pred             ---c--------------hhhhccCcceeeccccccccccccccccccCCCcchhccHHHHHHHHHhcCC-CCe-eEeee
Q 014324           69 ---P--------------HLLHLATVPLTIDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALP-PEI-FLRGH  129 (426)
Q Consensus        69 ---~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~  129 (426)
                         .              +.+.+.+.++..  .....+..+......    .........+.+.|.+.+. .++ |++++
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~--~~~~~g~~~~r~~~~----~~g~~~g~~l~~~L~~~~~~~gv~i~~~~  276 (571)
T 1y0p_A          203 INDPALVKVLSSHSKDSVDWMTAMGADLTD--VGMMGGASVNRAHRP----TGGAGVGAHVVQVLYDNAVKRNIDLRMNT  276 (571)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHHHHTTCCCCE--EECCTTCSSCCEEES----TTTCCHHHHHHHHHHHHHHHTTCEEESSE
T ss_pred             CCCHHHHHHHHHccHHHHHHHHhcCCCCcc--CcccCCcCCCeeEec----CCCCCCHHHHHHHHHHHHHhcCCEEEeCC
Confidence               0              000011111000  000000000000000    0000223566666766654 488 99999


Q ss_pred             eEEEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCchhhhh
Q 014324          130 QYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSIRQ  175 (426)
Q Consensus       130 ~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~vR~  175 (426)
                      +|+++..++++..+.|++. ..+|+..++++|.||.|+|.+|..++
T Consensus       277 ~v~~l~~~~~g~v~Gv~~~-~~~g~~~~i~a~~VVlAtGg~~~n~~  321 (571)
T 1y0p_A          277 RGIEVLKDDKGTVKGILVK-GMYKGYYWVKADAVILATGGFAKNNE  321 (571)
T ss_dssp             EEEEEEECTTSCEEEEEEE-ETTTEEEEEECSEEEECCCCCTTCHH
T ss_pred             EeeEeEEcCCCeEEEEEEE-eCCCcEEEEECCeEEEeCCCcccCHH
Confidence            9999987542332224433 23677667999999999999987554

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=99.33  E-value=3.3e-10  Score=110.97  Aligned_cols=66  Identities=20%  Similarity=0.281  Sum_probs=48.5

Q ss_pred             CCCCCCccEEEEcCChHHHHHHHHHHHcC------CcEEEEcccCCCCCCCC----------Ccc--eeccChhHHHHHH
Q 014324            1 MEKKEKGKAVIVGGSIAGISCAHALLRAG------WDVVVLEKAGGPPTGSP----------TGA--GLGLDRPAQRIIQ   62 (426)
Q Consensus         1 m~~~~~~~V~IvGaG~aGl~~A~~L~~~G------~~v~v~E~~~~~~~~~~----------~~~--~~~l~~~~~~~l~   62 (426)
                      |+. .++||+|||||++||++|+.|+++|      ++|+|+|+++.++....          .|.  .....+...++++
T Consensus         1 M~~-~~~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~l~~   79 (470)
T 3i6d_A            1 MSD-GKKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGGKIQTVKKDGYIIERGPDSFLERKKSAPQLVK   79 (470)
T ss_dssp             -----CEEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSSSSCTTCCEECCTTCCEESSCCCEETTCTHHHHHHH
T ss_pred             CCC-CCCcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCCCCCceEEEeccCCEEeccChhhhhhCCHHHHHHHH
Confidence            443 3589999999999999999999999      99999999988764211          111  1233567888999


Q ss_pred             HHhcC
Q 014324           63 SWLNG   67 (426)
Q Consensus        63 ~~~~~   67 (426)
                      ++|+.
T Consensus        80 ~lgl~   84 (470)
T 3i6d_A           80 DLGLE   84 (470)
T ss_dssp             HTTCC
T ss_pred             HcCCc
Confidence            98873

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=99.32  E-value=1.3e-10  Score=112.32  Aligned_cols=37  Identities=32%  Similarity=0.509  Sum_probs=34.6

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPT   43 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~   43 (426)
                      +||+|||||++||++|+.|+++|++|+|+|+.+.++.
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~GG   37 (421)
T 3nrn_A            1 MRAVVVGAGLGGLLAGAFLARNGHEIIVLEKSAMIGG   37 (421)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSSSCT
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCc
Confidence            4899999999999999999999999999999988754

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=99.29  E-value=1.4e-10  Score=114.62  Aligned_cols=37  Identities=27%  Similarity=0.455  Sum_probs=31.1

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPT   43 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~   43 (426)
                      .+|+|||||++||+||+.|+++|++|+|+|+++.++.
T Consensus         2 k~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~~~~GG   38 (501)
T 4dgk_A            2 KPTTVIGAGFGGLALAIRLQAAGIPVLLLEQRDKPGG   38 (501)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTCCEEEECCC-----
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCcEEEEccCCCCCC
Confidence            4799999999999999999999999999999999864

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=99.28  E-value=5.5e-11  Score=117.40  Aligned_cols=36  Identities=14%  Similarity=0.394  Sum_probs=33.6

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP   41 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   41 (426)
                      .+||+||||||+|+++|+.|++.|++|+|||+.+.+
T Consensus       107 ~~DVVIVGgGpaGL~aA~~La~~G~kV~VlEr~~~~  142 (549)
T 3nlc_A          107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEV  142 (549)
T ss_dssp             CCCCEEECCSHHHHHHHHHHHHTTCCCEEECSSCCH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCeEEEEEccCcc
Confidence            479999999999999999999999999999998764

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=99.28  E-value=2.7e-11  Score=111.09  Aligned_cols=144  Identities=17%  Similarity=0.217  Sum_probs=86.8

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHc--CCcEEEEcccCCCCCCCCCcc----eeccChhHHHHHHHHhcCCchhhhccCcc
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRA--GWDVVVLEKAGGPPTGSPTGA----GLGLDRPAQRIIQSWLNGRPHLLHLATVP   78 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~--G~~v~v~E~~~~~~~~~~~~~----~~~l~~~~~~~l~~~~~~~~~~~~~~~~~   78 (426)
                      ..+||+||||||+|+++|+.|+++  |++|+|+|+.+.++.....+.    ...+.+...+.|+.+++.           
T Consensus        64 ~~~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ggg~~~~g~~~~~~~~~~~~~~~L~~~Gv~-----------  132 (326)
T 2gjc_A           64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIP-----------  132 (326)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCCGGGCCCEEEETTTHHHHHHTTCC-----------
T ss_pred             CcCCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCccccccccccCcccchhhhhhHHHHHHHhhCcc-----------
Confidence            346999999999999999999999  999999999988753211110    112223344455554441           


Q ss_pred             eeeccccccccccccccccccCCCcchhccHHHHHHHHHhcC-C-CCe-eEeeeeEEEEEEecC-C-c--eEE-EEEEec
Q 014324           79 LTIDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNAL-P-PEI-FLRGHQYLSFCISEV-K-T--TVT-VKAKVL  150 (426)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~-~-~~~-i~~~~~v~~~~~~~~-~-~--~v~-v~~~~~  150 (426)
                      ...      .+.            .+...+...+.+.|.+.+ . .++ ++.+++++++..+++ + .  .|. |..+..
T Consensus       133 ~~~------~g~------------~~~~~~~~~~~~~L~~~a~~~~GV~i~~~~~V~~Ll~~~~~~~g~~rV~GVvv~~~  194 (326)
T 2gjc_A          133 YED------EGD------------YVVVKHAALFISTVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTNWT  194 (326)
T ss_dssp             CEE------CSS------------EEEESCHHHHHHHHHHHHHTSTTEEEETTEEEEEEEECCCC-----CEEEEEEEEH
T ss_pred             ccc------CCC------------eEEEcchHHHHHHHHHHHHHhcCcEEEecceeeeeeecccccCCCcEEEEEEecce
Confidence            000      000            000112345566666644 3 488 999999999987542 1 1  222 332211


Q ss_pred             ---cCC------ceEEEee---------------cEEEeccCCchhhhhhh
Q 014324          151 ---QTD------EVIEIKG---------------NLLVAADGCLSSIRQSF  177 (426)
Q Consensus       151 ---~~g------~~~~~~~---------------d~vI~AdG~~S~vR~~l  177 (426)
                         .+|      +..++.|               |+||.|+|+.|++.+.+
T Consensus       195 ~v~~~g~~~~~~d~~~I~A~G~~~~~~~~~~~~~~~VV~ATG~~~~~~~~~  245 (326)
T 2gjc_A          195 LVTQAHGTQCCMDPNVIELAGYKNDGTRDLSQKHGVILSTTGHDGPFGAFC  245 (326)
T ss_dssp             HHHTC---CCCCCCEEEEESCCCSSSCCCSSTTCCEEEECCCCC--CCSHH
T ss_pred             eecccccceeccCceEEEEeeccccccccccccCCEEEECcCCCchHHHHH
Confidence               122      3346899               99999999999998886

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=99.28  E-value=2e-10  Score=111.89  Aligned_cols=38  Identities=24%  Similarity=0.322  Sum_probs=34.2

Q ss_pred             CCCccEEEEcCChHHHHHHHHHHHcC-CcEEEEcccCCC
Q 014324            4 KEKGKAVIVGGSIAGISCAHALLRAG-WDVVVLEKAGGP   41 (426)
Q Consensus         4 ~~~~~V~IvGaG~aGl~~A~~L~~~G-~~v~v~E~~~~~   41 (426)
                      |.++||+|||||++|+++|+.|+++| .+|+|+|+...+
T Consensus        21 m~~~dVvIIGgGiaGls~A~~La~~G~~~V~vlE~~~~~   59 (448)
T 3axb_A           21 MPRFDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDAGHAP   59 (448)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHHHHCSCEEEEESSSST
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHhCCCCcEEEEccCCCC
Confidence            56789999999999999999999999 999999994444

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=99.28  E-value=1.7e-11  Score=115.38  Aligned_cols=130  Identities=17%  Similarity=0.185  Sum_probs=81.9

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccc
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQN   84 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~   84 (426)
                      +++||+|||||++|+++|..|+++|++|+|||+.+.++.      .+..         .+    . .+. ...+...  .
T Consensus         2 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~gg------~~~~---------~~----~-~~~-~~~~~~~--~   58 (357)
T 4a9w_A            2 DSVDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGG------AWQH---------AW----H-SLH-LFSPAGW--S   58 (357)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSSSG------GGGG---------SC----T-TCB-CSSCGGG--S
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCC------cccC---------CC----C-CcE-ecCchhh--h
Confidence            458999999999999999999999999999999987531      1100         00    0 000 0000000  0


Q ss_pred             cccccccccccccccCCCcchhccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEE-EEEEeccCCceEEEeec
Q 014324           85 QATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVT-VKAKVLQTDEVIEIKGN  161 (426)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~-v~~~~~~~g~~~~~~~d  161 (426)
                      .. .+.     ..  .........+..+.+.|.+.++ .++ ++++++|+++..+++  .+. |+   +.+|   ++++|
T Consensus        59 ~~-~~~-----~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~~~--~~~~v~---~~~g---~~~~d  122 (357)
T 4a9w_A           59 SI-PGW-----PM--PASQGPYPARAEVLAYLAQYEQKYALPVLRPIRVQRVSHFGE--RLRVVA---RDGR---QWLAR  122 (357)
T ss_dssp             CC-SSS-----CC--CCCSSSSCBHHHHHHHHHHHHHHTTCCEECSCCEEEEEEETT--EEEEEE---TTSC---EEEEE
T ss_pred             hC-CCC-----CC--CCCccCCCCHHHHHHHHHHHHHHcCCEEEcCCEEEEEEECCC--cEEEEE---eCCC---EEEeC
Confidence            00 000     00  0011122456777777776554 377 999999999986543  555 65   5666   38999


Q ss_pred             EEEeccCCchhh
Q 014324          162 LLVAADGCLSSI  173 (426)
Q Consensus       162 ~vI~AdG~~S~v  173 (426)
                      .||.|+|.+|.-
T Consensus       123 ~vV~AtG~~~~~  134 (357)
T 4a9w_A          123 AVISATGTWGEA  134 (357)
T ss_dssp             EEEECCCSGGGB
T ss_pred             EEEECCCCCCCC
Confidence            999999998753

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=99.27  E-value=8.2e-12  Score=124.07  Aligned_cols=41  Identities=29%  Similarity=0.362  Sum_probs=35.4

Q ss_pred             CCCC--CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324            1 MEKK--EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP   42 (426)
Q Consensus         1 m~~~--~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~   42 (426)
                      |+.|  ..+||+|||||++||++|+.|++ |.+|+|+||.....
T Consensus         1 M~~m~~~~~DVvVVG~G~AGl~aAl~la~-G~~V~vlEk~~~~~   43 (540)
T 1chu_A            1 MNTLPEHSCDVLIIGSGAAGLSLALRLAD-QHQVIVLSKGPVTE   43 (540)
T ss_dssp             -CBCCSEECSEEEECCSHHHHHHHHHHTT-TSCEEEECSSCTTC
T ss_pred             CCCCCCCCCCEEEECccHHHHHHHHHHhc-CCcEEEEECCCCCC
Confidence            5443  35899999999999999999999 99999999998754

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=99.27  E-value=2e-11  Score=107.87  Aligned_cols=127  Identities=17%  Similarity=0.143  Sum_probs=81.1

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccc
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQN   84 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~   84 (426)
                      .++||+||||||+|+.+|+.|++.|.+|+|+|+....     .|  ....+..    .  +......+.+      +.  
T Consensus         2 ~~~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~~~-----~G--~~~~~~~----~--~~~~~~~~~~------~~--   60 (232)
T 2cul_A            2 AAYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDA-----VM--MPFLPPK----P--PFPPGSLLER------AY--   60 (232)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGG-----TT--CCSSCCC----S--CCCTTCHHHH------HC--
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCc-----CC--cccCccc----c--ccchhhHHhh------hc--
Confidence            4589999999999999999999999999999998431     11  1111110    0  0000000000      00  


Q ss_pred             cccccccccccccccCCCcchhccHHHHHHHHHhcCC--CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeec
Q 014324           85 QATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALP--PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGN  161 (426)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~--~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d  161 (426)
                         +          ...     .++..+.+.|.+.++  .++ ++ +++|+++..+++ ..+.++   +.+|+.  ++||
T Consensus        61 ---d----------~~g-----~~~~~~~~~l~~~~~~~~gv~i~-~~~v~~i~~~~~-~v~~v~---~~~g~~--i~a~  115 (232)
T 2cul_A           61 ---D----------PKD-----ERVWAFHARAKYLLEGLRPLHLF-QATATGLLLEGN-RVVGVR---TWEGPP--ARGE  115 (232)
T ss_dssp             ---C----------TTC-----CCHHHHHHHHHHHHHTCTTEEEE-ECCEEEEEEETT-EEEEEE---ETTSCC--EECS
T ss_pred             ---c----------CCC-----CCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEEeCC-EEEEEE---ECCCCE--EECC
Confidence               0          000     056777777777664  377 65 679999986433 222344   567764  8999


Q ss_pred             EEEeccCCchhhhhhh
Q 014324          162 LLVAADGCLSSIRQSF  177 (426)
Q Consensus       162 ~vI~AdG~~S~vR~~l  177 (426)
                      +||.|+|.+|..+..+
T Consensus       116 ~VV~A~G~~s~~~~~~  131 (232)
T 2cul_A          116 KVVLAVGSFLGARLFL  131 (232)
T ss_dssp             EEEECCTTCSSCEEEE
T ss_pred             EEEECCCCChhhceec
Confidence            9999999999888654

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=99.26  E-value=2.5e-10  Score=107.05  Aligned_cols=36  Identities=31%  Similarity=0.467  Sum_probs=33.4

Q ss_pred             ccEEEEcCChHHHHHHHHHHH---cCCcEEEEcccCCCC
Q 014324            7 GKAVIVGGSIAGISCAHALLR---AGWDVVVLEKAGGPP   42 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~---~G~~v~v~E~~~~~~   42 (426)
                      +||+|||||++|+++|+.|++   +|++|+||||...++
T Consensus         2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~~~g   40 (342)
T 3qj4_A            2 AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDSG   40 (342)
T ss_dssp             EEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSSSSC
T ss_pred             CcEEEECCcHHHHHHHHHHHhhccCCceEEEEECCCCCc
Confidence            589999999999999999999   999999999987654

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=99.26  E-value=1.5e-11  Score=117.65  Aligned_cols=145  Identities=16%  Similarity=0.173  Sum_probs=81.1

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCC-Ccce-ec-----cChh---------HHHHHHHHhcC-
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSP-TGAG-LG-----LDRP---------AQRIIQSWLNG-   67 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~-~~~~-~~-----l~~~---------~~~~l~~~~~~-   67 (426)
                      +++||+||||||+|+++|+.|+++|.+|+|+||.+.++.... .+.+ ..     ..+.         ....+..+... 
T Consensus         3 ~~~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~~~g~~~~~sggg~cn~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   82 (401)
T 2gqf_A            3 QYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTNWD   82 (401)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCHHH
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhCCCCEEEEeCCCCCchhcEEcCCCeEEccCCccCHHHhccCCHHHHHHHHHhCCHHH
Confidence            468999999999999999999999999999999987532000 0000 00     0000         00011111000 


Q ss_pred             CchhhhccCcceeeccccccccccccccccccCCCcchhccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecC--CceE
Q 014324           68 RPHLLHLATVPLTIDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEV--KTTV  143 (426)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~--~~~v  143 (426)
                      ..+.+...+.+...    ...+..          ++. . ....+.+.|.+.++ .|+ ++++++++++..+++  +..+
T Consensus        83 ~~~~~~~~Gi~~~~----~~~g~~----------~p~-~-~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~~  146 (401)
T 2gqf_A           83 FISLVAEQGITYHE----KELGQL----------FCD-E-GAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRF  146 (401)
T ss_dssp             HHHHHHHTTCCEEE----CSTTEE----------EET-T-CTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCE
T ss_pred             HHHHHHhCCCceEE----CcCCEE----------ccC-C-CHHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCeE
Confidence            00000111111000    000000          000 1 34566666766665 378 999999999986421  2346


Q ss_pred             EEEEEeccCCceEEEeecEEEeccCCch
Q 014324          144 TVKAKVLQTDEVIEIKGNLLVAADGCLS  171 (426)
Q Consensus       144 ~v~~~~~~~g~~~~~~~d~vI~AdG~~S  171 (426)
                      .|+   ..+|   +++||.||.|+|.+|
T Consensus       147 ~v~---~~~g---~i~ad~VVlAtG~~s  168 (401)
T 2gqf_A          147 VLQ---VNST---QWQCKNLIVATGGLS  168 (401)
T ss_dssp             EEE---ETTE---EEEESEEEECCCCSS
T ss_pred             EEE---ECCC---EEECCEEEECCCCcc
Confidence            655   4444   389999999999999

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=99.25  E-value=7.3e-11  Score=115.29  Aligned_cols=154  Identities=12%  Similarity=0.011  Sum_probs=87.0

Q ss_pred             ccEEEEcCChHHHHHHHHHHH---cCCc---EEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCccee
Q 014324            7 GKAVIVGGSIAGISCAHALLR---AGWD---VVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLT   80 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~---~G~~---v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~   80 (426)
                      +||+||||||+|+++|..|++   .|++   |+|||+.+.++.      .+...+..  -+..++......+....    
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG------~w~~~~~~--g~~~~g~~~~~~~y~~l----   70 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGG------QWNYTWRT--GLDENGEPVHSSMYRYL----   70 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCG------GGSCCSCC--SBCTTSSBCCCCCCTTC----
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCC------EeecCCCC--CccccCCCCcCccccch----
Confidence            699999999999999999999   9999   999999987542      11111000  00000100000000000    


Q ss_pred             ecccccccccc--ccccccc-c-CCCcchhccHHHHHHHHHhcCCC-Ce---eEeeeeEEEEEEecCCceEEEEEEeccC
Q 014324           81 IDQNQATDNAK--VTRTLAR-D-DNFNFRAAHWADLHGLLYNALPP-EI---FLRGHQYLSFCISEVKTTVTVKAKVLQT  152 (426)
Q Consensus        81 ~~~~~~~~~~~--~~~~~~~-~-~~~~~~~~~r~~l~~~L~~~~~~-~~---i~~~~~v~~~~~~~~~~~v~v~~~~~~~  152 (426)
                         ........  +...... . .......+++..+.+.|.+.++. ++   ++++++|+++...++...++|++.+..+
T Consensus        71 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~  147 (464)
T 2xve_A           71 ---WSNGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTT  147 (464)
T ss_dssp             ---BCSSCGGGTCBTTBCHHHHHSSCCCSSCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTT
T ss_pred             ---hhcCChhhcccCCCCCCcccCCCCCCCCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCC
Confidence               00000000  0000000 0 00011234667777777765542 33   7889999999976654567777554445


Q ss_pred             CceEEEeecEEEeccCCchhhhh
Q 014324          153 DEVIEIKGNLLVAADGCLSSIRQ  175 (426)
Q Consensus       153 g~~~~~~~d~vI~AdG~~S~vR~  175 (426)
                      |+..++++|.||.|+|.+|.-+.
T Consensus       148 g~~~~~~~d~VVvAtG~~s~p~~  170 (464)
T 2xve_A          148 DTIYSEEFDYVVCCTGHFSTPYV  170 (464)
T ss_dssp             TEEEEEEESEEEECCCSSSSBCC
T ss_pred             CceEEEEcCEEEECCCCCCCCcc
Confidence            65556899999999998776553

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=99.24  E-value=3.3e-11  Score=112.66  Aligned_cols=124  Identities=14%  Similarity=0.132  Sum_probs=80.0

Q ss_pred             CCCCCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCccee
Q 014324            1 MEKKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLT   80 (426)
Q Consensus         1 m~~~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~   80 (426)
                      || +.++||+||||||+|+++|+.|+++|++|+|||+.+.++      ..+         .. ..+  ...+..      
T Consensus         1 m~-~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~g------g~~---------~~-~~~--~~~~~~------   55 (335)
T 2zbw_A            1 MA-ADHTDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPG------GQL---------TA-LYP--EKYIYD------   55 (335)
T ss_dssp             ---CCEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSC------HHH---------HH-TCT--TSEECC------
T ss_pred             CC-CCcCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCC------Cee---------ec-cCC--Cceeec------
Confidence            44 356899999999999999999999999999999987642      111         00 000  000000      


Q ss_pred             eccccccccccccccccccCCCcchhccHHHHHHHHHhcCCC-Ce-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEE
Q 014324           81 IDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPP-EI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEI  158 (426)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~-~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~  158 (426)
                            ..              .+..+.+..+.+.|.+.+.. ++ ++++++|..+..+++  .++++   ..+|+.  +
T Consensus        56 ------~~--------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~~~--~~~v~---~~~g~~--~  108 (335)
T 2zbw_A           56 ------VA--------------GFPKVYAKDLVKGLVEQVAPFNPVYSLGERAETLEREGD--LFKVT---TSQGNA--Y  108 (335)
T ss_dssp             ------ST--------------TCSSEEHHHHHHHHHHHHGGGCCEEEESCCEEEEEEETT--EEEEE---ETTSCE--E
T ss_pred             ------cC--------------CCCCCCHHHHHHHHHHHHHHcCCEEEeCCEEEEEEECCC--EEEEE---ECCCCE--E
Confidence                  00              00113345555566555543 66 888999999986543  55555   456654  8


Q ss_pred             eecEEEeccCCchhhhhh
Q 014324          159 KGNLLVAADGCLSSIRQS  176 (426)
Q Consensus       159 ~~d~vI~AdG~~S~vR~~  176 (426)
                      ++|.||.|+|.+|...+.
T Consensus       109 ~~~~lv~AtG~~~~~p~~  126 (335)
T 2zbw_A          109 TAKAVIIAAGVGAFEPRR  126 (335)
T ss_dssp             EEEEEEECCTTSEEEECC
T ss_pred             EeCEEEECCCCCCCCCCC
Confidence            999999999998755443

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=99.24  E-value=2.8e-11  Score=120.15  Aligned_cols=138  Identities=20%  Similarity=0.255  Sum_probs=85.4

Q ss_pred             CCccEEEEcCChHHHHHHHHHH-HcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHH-hcCCchhhhccCcceeec
Q 014324            5 EKGKAVIVGGSIAGISCAHALL-RAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSW-LNGRPHLLHLATVPLTID   82 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~-~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~   82 (426)
                      .++||+|||||++|+++|+.|+ +.|++|+|||+.+..+.      .+...        .+ +.  .     ...+..  
T Consensus         7 ~~~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~GG------tw~~~--------~ypg~--~-----~d~~s~--   63 (540)
T 3gwf_A            7 HTVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGG------TWYWN--------RYPGA--L-----SDTESH--   63 (540)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSCT------HHHHC--------CCTTC--E-----EEEEGG--
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCCC------ccccc--------CCCCc--e-----ecCCcc--
Confidence            4589999999999999999999 99999999999887531      11000        00 00  0     000000  


Q ss_pred             cccccccccccccccccCCCcchhccHHHHHHHHHhcCCC-Ce---eEeeeeEEEEEEecCCceEEEEEEeccCCceEEE
Q 014324           83 QNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPP-EI---FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEI  158 (426)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~-~~---i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~  158 (426)
                      ...+...    ...............+..+.+.|.+.+.+ ++   ++++++|+++..+++...++|+   ..+|++  +
T Consensus        64 ~~~~~~~----~~~~~~~~~~~~~~~~~ei~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~---~~~G~~--i  134 (540)
T 3gwf_A           64 LYRFSFD----RDLLQESTWKTTYITQPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVT---TDHGEV--Y  134 (540)
T ss_dssp             GSSCCSC----HHHHHHCCCSBSEEEHHHHHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEE---ETTSCE--E
T ss_pred             eeeeccc----cccccCCCCcccCCCHHHHHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEE---EcCCCE--E
Confidence            0000000    00000001111234566777777664432 32   8899999999987776678877   677775  8


Q ss_pred             eecEEEeccCCchhhh
Q 014324          159 KGNLLVAADGCLSSIR  174 (426)
Q Consensus       159 ~~d~vI~AdG~~S~vR  174 (426)
                      +||+||.|+|..|.-+
T Consensus       135 ~ad~lV~AtG~~s~p~  150 (540)
T 3gwf_A          135 RAKYVVNAVGLLSAIN  150 (540)
T ss_dssp             EEEEEEECCCSCCSBC
T ss_pred             EeCEEEECCcccccCC
Confidence            9999999999987544

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=99.23  E-value=6.8e-11  Score=118.87  Aligned_cols=169  Identities=15%  Similarity=0.105  Sum_probs=90.7

Q ss_pred             CCCccEEEEcCChHHHHHHHHHHHcC--CcEEEEcccCCCCCCCC-Ccceec--cCh-hHH-----HHHHHH-hcC----
Q 014324            4 KEKGKAVIVGGSIAGISCAHALLRAG--WDVVVLEKAGGPPTGSP-TGAGLG--LDR-PAQ-----RIIQSW-LNG----   67 (426)
Q Consensus         4 ~~~~~V~IvGaG~aGl~~A~~L~~~G--~~v~v~E~~~~~~~~~~-~~~~~~--l~~-~~~-----~~l~~~-~~~----   67 (426)
                      ..++||+|||||++||++|+.|+++|  .+|+|+||.......+. ...|+.  +.+ ...     +.++.- +..    
T Consensus         3 ~~~~DVvIVG~G~AGl~aAl~la~~G~~~~V~vlEk~~~~~~~s~~a~GGi~~~~~~~ds~~~~~~d~~~~g~~~~d~~~   82 (602)
T 1kf6_A            3 TFQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFEYHFHDTVAGGDWLCEQDV   82 (602)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGSGGGGCCSCEECCCSTTCCHHHHHHHHHHHTTTCSCHHH
T ss_pred             cccCCEEEECCCHHHHHHHHHHHhcCCCCcEEEEeCCCCCCChHHHhcCccEEeCCCCCCHHHHHHHHHHhcCCCCCHHH
Confidence            34689999999999999999999999  99999999875432110 011221  111 000     111100 000    


Q ss_pred             ----------CchhhhccCcceeeccccccccccccccccccCCC-cch--hccHHHHHHHHHhcCC-CC-e-eEeeeeE
Q 014324           68 ----------RPHLLHLATVPLTIDQNQATDNAKVTRTLARDDNF-NFR--AAHWADLHGLLYNALP-PE-I-FLRGHQY  131 (426)
Q Consensus        68 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~r~~l~~~L~~~~~-~~-~-i~~~~~v  131 (426)
                                ..+.+...+.++..    ...+............. ...  ...-..+.+.|.+.+. .+ + +++++.+
T Consensus        83 v~~~~~~~~~~i~~L~~~Gv~f~~----~~~g~~~~~~~gg~~~~r~~~~~d~tg~~l~~~L~~~~~~~gnv~i~~~~~v  158 (602)
T 1kf6_A           83 VDYFVHHCPTEMTQLELWGCPWSR----RPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFV  158 (602)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCCB----CTTSSBCCBCCTTCSSCCEECSTTCHHHHHHHHHHHHHTTCTTEEEEETEEE
T ss_pred             HHHHHHHHHHHHHHHHHcCCCccc----CCCCcccccccCCccCCeEEEcCCCCHHHHHHHHHHHHHhCCCcEEEeCCEE
Confidence                      00111222222111    00110000000000000 000  0012456666766554 46 8 9999999


Q ss_pred             EEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCchhhhhhh
Q 014324          132 LSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSIRQSF  177 (426)
Q Consensus       132 ~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~vR~~l  177 (426)
                      +++..++ +..+.+...+..+|+...+.|+.||.|||.+|.++...
T Consensus       159 ~~l~~~~-g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~s~~~~~~  203 (602)
T 1kf6_A          159 LDILVDD-GHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRYN  203 (602)
T ss_dssp             EEEEEET-TEEEEEEEEETTTTEEEEEECSCEEECCCCCGGGSSSB
T ss_pred             EEEEEeC-CEEEEEEEEEcCCCcEEEEEcCeEEECCCCCcccccCc
Confidence            9998753 32223443345678766799999999999999987653

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=99.23  E-value=6.1e-11  Score=117.33  Aligned_cols=39  Identities=36%  Similarity=0.488  Sum_probs=36.0

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPT   43 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~   43 (426)
                      ..+||+|||||++||++|+.|+++|.+|+|+||.+.++.
T Consensus        40 ~~~DVvVVGaG~AGl~AA~~aa~~G~~V~vlEk~~~~GG   78 (510)
T 4at0_A           40 YEADVVVAGYGIAGVAASIEAARAGADVLVLERTSGWGG   78 (510)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCT
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCC
Confidence            358999999999999999999999999999999998754

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=99.23  E-value=1.5e-09  Score=104.89  Aligned_cols=37  Identities=30%  Similarity=0.433  Sum_probs=34.6

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPT   43 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~   43 (426)
                      +||+|||||++||++|+.|+++|++|+|+|+++.++.
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~GG   37 (425)
T 3ka7_A            1 MKTVVIGAGLGGLLSAARLSKAGHEVEVFERLPITGG   37 (425)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBT
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCceEEEeCCCCCCC
Confidence            4899999999999999999999999999999988754

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=99.22  E-value=5.3e-11  Score=118.63  Aligned_cols=138  Identities=17%  Similarity=0.131  Sum_probs=84.2

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccc
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQN   84 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~   84 (426)
                      .++||+|||||++|+++|+.|++.|++|+|||+.+.++.  .  +.....|.         .    .+   ..+..  ..
T Consensus        15 ~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG--~--w~~~~~pg---------~----~~---d~~~~--~~   72 (542)
T 1w4x_A           15 EEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGG--V--WYWNRYPG---------A----RC---DIESI--EY   72 (542)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCT--H--HHHCCCTT---------C----BC---SSCTT--TS
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCC--c--ccccCCCc---------e----ee---ccccc--cc
Confidence            458999999999999999999999999999999987531  0  00000000         0    00   00000  00


Q ss_pred             ccc-ccccccccccccCCCcchhccHHHHHHHHHhcCC---CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEe
Q 014324           85 QAT-DNAKVTRTLARDDNFNFRAAHWADLHGLLYNALP---PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIK  159 (426)
Q Consensus        85 ~~~-~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~---~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~  159 (426)
                      .+. ..+..     .........+.+..+.++|...+.   .+. ++++++|++++.+++...++|+   .++|++  ++
T Consensus        73 ~~~f~~~~~-----~~~~~~~~~~~~~~i~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~---~~~G~~--~~  142 (542)
T 1w4x_A           73 CYSFSEEVL-----QEWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVD---TNHGDR--IR  142 (542)
T ss_dssp             SCCSCHHHH-----HHCCCCBSSCBHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEE---ETTCCE--EE
T ss_pred             ccccChhhh-----hccCcccccCCHHHHHHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEE---ECCCCE--EE
Confidence            000 00000     000001112345666666655332   235 8999999999987666677776   567764  89


Q ss_pred             ecEEEeccCCchhhh
Q 014324          160 GNLLVAADGCLSSIR  174 (426)
Q Consensus       160 ~d~vI~AdG~~S~vR  174 (426)
                      ||+||.|+|..|.-+
T Consensus       143 ad~vV~AtG~~s~p~  157 (542)
T 1w4x_A          143 ARYLIMASGQLSVPQ  157 (542)
T ss_dssp             EEEEEECCCSCCCCC
T ss_pred             eCEEEECcCCCCCCC
Confidence            999999999987544

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=99.22  E-value=4.4e-11  Score=118.90  Aligned_cols=140  Identities=16%  Similarity=0.115  Sum_probs=83.5

Q ss_pred             CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecc
Q 014324            4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQ   83 (426)
Q Consensus         4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~   83 (426)
                      +..+||+|||||++|+++|+.|++.|++|+|||+++..+.  .  +.....|.         .       ....+...  
T Consensus         7 ~~~~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GG--t--w~~~~yPg---------~-------~~d~~~~~--   64 (545)
T 3uox_A            7 SPALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGG--T--WYWNRYPG---------C-------RLDTESYA--   64 (545)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCT--H--HHHCCCTT---------C-------BCSSCHHH--
T ss_pred             CCCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCC--c--cccCCCCc---------e-------eecCchhh--
Confidence            4568999999999999999999999999999999987532  0  00000000         0       00000000  


Q ss_pred             ccccccccccccccccCCCcchhccHHHHHHHHHhcCCC-C--e-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEe
Q 014324           84 NQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPP-E--I-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIK  159 (426)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~-~--~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~  159 (426)
                      ..+.    +................+..+.+.+.+.++. +  . ++++++|+++..+++...++|+   +.+|++  ++
T Consensus        65 y~~~----f~~~~~~~~~~~~~~~~~~ei~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~---~~~G~~--~~  135 (545)
T 3uox_A           65 YGYF----ALKGIIPEWEWSENFASQPEMLRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVT---LDNEEV--VT  135 (545)
T ss_dssp             HCHH----HHTTSSTTCCCSBSSCBHHHHHHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEE---ETTTEE--EE
T ss_pred             cccc----cCcccccCCCccccCCCHHHHHHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEE---ECCCCE--EE
Confidence            0000    0000000000111123456666666554432 2  2 8899999999987776778877   667764  89


Q ss_pred             ecEEEeccCCchhhh
Q 014324          160 GNLLVAADGCLSSIR  174 (426)
Q Consensus       160 ~d~vI~AdG~~S~vR  174 (426)
                      ||+||.|+|..|.-+
T Consensus       136 ad~lV~AtG~~s~p~  150 (545)
T 3uox_A          136 CRFLISATGPLSASR  150 (545)
T ss_dssp             EEEEEECCCSCBC--
T ss_pred             eCEEEECcCCCCCCc
Confidence            999999999876544

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=99.22  E-value=4.9e-11  Score=112.71  Aligned_cols=122  Identities=15%  Similarity=0.121  Sum_probs=80.4

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccc
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQN   84 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~   84 (426)
                      ..+||+||||||+|+++|+.|+++|++|+|||+.+.++      ..+.          .+.+   ..      .  . +.
T Consensus        13 ~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~g------g~~~----------~~~~---~~------~--~-~~   64 (360)
T 3ab1_A           13 DMRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLG------GQLA----------ALYP---EK------H--I-YD   64 (360)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC------HHHH----------HTCT---TS------E--E-CC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCC------Cccc----------ccCC---Cc------c--c-cc
Confidence            45899999999999999999999999999999987642      1110          0000   00      0  0 00


Q ss_pred             cccccccccccccccCCCcchhccHHHHHHHHHhcCCC-Ce-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecE
Q 014324           85 QATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPP-EI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNL  162 (426)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~-~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~  162 (426)
                        .              ..+..+.+..+.+.|.+.+.. ++ ++++++|+.+...++ ..++++   ..+|+.  +++|+
T Consensus        65 --~--------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~~~-~~~~v~---~~~g~~--~~~~~  122 (360)
T 3ab1_A           65 --V--------------AGFPEVPAIDLVESLWAQAERYNPDVVLNETVTKYTKLDD-GTFETR---TNTGNV--YRSRA  122 (360)
T ss_dssp             --S--------------TTCSSEEHHHHHHHHHHHHHTTCCEEECSCCEEEEEECTT-SCEEEE---ETTSCE--EEEEE
T ss_pred             --C--------------CCCCCCCHHHHHHHHHHHHHHhCCEEEcCCEEEEEEECCC-ceEEEE---ECCCcE--EEeeE
Confidence              0              001113345566666665543 67 889999999986433 256665   566754  89999


Q ss_pred             EEeccCCchhhhhh
Q 014324          163 LVAADGCLSSIRQS  176 (426)
Q Consensus       163 vI~AdG~~S~vR~~  176 (426)
                      ||.|+|.+|..++.
T Consensus       123 li~AtG~~~~~~~~  136 (360)
T 3ab1_A          123 VLIAAGLGAFEPRK  136 (360)
T ss_dssp             EEECCTTCSCCBCC
T ss_pred             EEEccCCCcCCCCC
Confidence            99999998765543

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=99.21  E-value=9.2e-11  Score=116.80  Aligned_cols=154  Identities=14%  Similarity=0.138  Sum_probs=86.4

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccC-CCCCCCCCcceec-cC-hhHHHHHHHHhcCCchhhhccCcceee
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAG-GPPTGSPTGAGLG-LD-RPAQRIIQSWLNGRPHLLHLATVPLTI   81 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~-~~~~~~~~~~~~~-l~-~~~~~~l~~~~~~~~~~~~~~~~~~~~   81 (426)
                      .++||+|||||+||+++|+.|++.|.+|+|+|+.. ..+.. .+....+ +. ....+.++.++..........+..+. 
T Consensus        27 ~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~-~Cnps~ggia~~~lv~ei~algg~~~~~~d~~gi~f~-  104 (651)
T 3ces_A           27 DPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQM-SCNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQFR-  104 (651)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCC-SSSSEEESTTHHHHHHHHHHTTCSHHHHHHHHEEEEE-
T ss_pred             CcCCEEEECChHHHHHHHHHHHhCCCCEEEEeecccccccc-cccccccchhhHHHHHHHHHhccHHHHHhhhcccchh-
Confidence            46899999999999999999999999999999985 23211 1111111 11 11222233332210000111111110 


Q ss_pred             ccccccccccccccccccCCCcchhccHHHHHHHHHhcCC--CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEE
Q 014324           82 DQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALP--PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEI  158 (426)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~--~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~  158 (426)
                       ......+..+        ......+++..+.+.|.+.++  .++ + ++++|+++..++ +..+.|.   ..+|.  ++
T Consensus       105 -~l~~~kgpav--------~~~r~~~Dr~~~~~~L~e~Le~~~GV~I-~~~~V~~L~~e~-g~V~GV~---t~dG~--~I  168 (651)
T 3ces_A          105 -ILNASKGPAV--------RATRAQADRVLYRQAVRTALENQPNLMI-FQQAVEDLIVEN-DRVVGAV---TQMGL--KF  168 (651)
T ss_dssp             -EESTTSCGGG--------CEEEEEECHHHHHHHHHHHHHTCTTEEE-EECCEEEEEESS-SBEEEEE---ETTSE--EE
T ss_pred             -hhhcccCccc--------ccchhhCCHHHHHHHHHHHHHhCCCCEE-EEEEEEEEEecC-CEEEEEE---ECCCC--EE
Confidence             0000000000        000123566777777777664  377 6 678999997633 2223444   45674  48


Q ss_pred             eecEEEeccCCchhhhhh
Q 014324          159 KGNLLVAADGCLSSIRQS  176 (426)
Q Consensus       159 ~~d~vI~AdG~~S~vR~~  176 (426)
                      +||.||.|||.+|..+..
T Consensus       169 ~Ad~VVLATGt~s~~~~i  186 (651)
T 3ces_A          169 RAKAVVLTVGTFLDGKIH  186 (651)
T ss_dssp             EEEEEEECCSTTTCCEEE
T ss_pred             ECCEEEEcCCCCccCccc
Confidence            999999999999876654

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=99.21  E-value=7.2e-11  Score=99.91  Aligned_cols=113  Identities=18%  Similarity=0.111  Sum_probs=77.3

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccccc
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQA   86 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   86 (426)
                      +||+|||||++|+.+|..|++.|.+|+|+|+.+....     ....+.                .     .+        
T Consensus         2 ~~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~~~~~-----~~~~~~----------------~-----~~--------   47 (180)
T 2ywl_A            2 WDVIVVGGGPSGLSAALFLARAGLKVLVLDGGRSKVK-----GVSRVP----------------N-----YP--------   47 (180)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCTTT-----TCSCCC----------------C-----ST--------
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccc-----Cchhhh----------------c-----cC--------
Confidence            6999999999999999999999999999999874321     000000                0     00        


Q ss_pred             cccccccccccccCCCcchhccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEE
Q 014324           87 TDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLV  164 (426)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI  164 (426)
                        +  +          + ..+....+.+.+.+.++ .++ ++++ ++++++.+++  .+.++   +++|   ++++|+||
T Consensus        48 --~--~----------~-~~~~~~~~~~~l~~~~~~~gv~v~~~-~v~~i~~~~~--~~~v~---~~~g---~i~ad~vI  103 (180)
T 2ywl_A           48 --G--L----------L-DEPSGEELLRRLEAHARRYGAEVRPG-VVKGVRDMGG--VFEVE---TEEG---VEKAERLL  103 (180)
T ss_dssp             --T--C----------T-TCCCHHHHHHHHHHHHHHTTCEEEEC-CCCEEEECSS--SEEEE---CSSC---EEEEEEEE
T ss_pred             --C--C----------c-CCCCHHHHHHHHHHHHHHcCCEEEeC-EEEEEEEcCC--EEEEE---ECCC---EEEECEEE
Confidence              0  0          0 01223455555655554 477 8888 9999986433  35555   5666   38999999


Q ss_pred             eccCCchhhhhhh
Q 014324          165 AADGCLSSIRQSF  177 (426)
Q Consensus       165 ~AdG~~S~vR~~l  177 (426)
                      .|+|..|.+++.+
T Consensus       104 ~A~G~~~~~~~~~  116 (180)
T 2ywl_A          104 LCTHKDPTLPSLL  116 (180)
T ss_dssp             ECCTTCCHHHHHH
T ss_pred             ECCCCCCCccccC
Confidence            9999999886665

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=99.19  E-value=8.4e-11  Score=116.96  Aligned_cols=139  Identities=20%  Similarity=0.159  Sum_probs=84.4

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccc
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQN   84 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~   84 (426)
                      ..+||+|||||++|+++|+.|++.|++|+|||+.+..+.      .+..+.       .-|.       ....+...  .
T Consensus        20 ~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG------tw~~~~-------ypg~-------~~dv~s~~--y   77 (549)
T 4ap3_A           20 TSYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGG------VWYWNR-------YPGA-------RCDVESID--Y   77 (549)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCT------HHHHCC-------CTTC-------BCSSCTTT--S
T ss_pred             CCCCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCCC------ccccCC-------CCCc-------eeCCCchh--c
Confidence            457999999999999999999999999999999887531      110000       0000       00000000  0


Q ss_pred             cccccccccccccccCCCcchhccHHHHHHHHHhcCCC-C--e-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEee
Q 014324           85 QATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPP-E--I-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKG  160 (426)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~-~--~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~  160 (426)
                      ...-.    ...............+..+.+.+.+.+++ +  . ++++++|+++..+++...++|+   +.+|++  ++|
T Consensus        78 ~~~f~----~~~~~~~~~~~~~~~~~ei~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~---~~~G~~--i~a  148 (549)
T 4ap3_A           78 SYSFS----PELEQEWNWSEKYATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVR---TDRGDE--VSA  148 (549)
T ss_dssp             SCCSC----HHHHHHCCCSSSSCBHHHHHHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEE---ETTCCE--EEE
T ss_pred             ccccc----cccccCCCCccCCCCHHHHHHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEE---ECCCCE--EEe
Confidence            00000    00000000111123456666666654432 3  2 8899999999988777778887   677875  899


Q ss_pred             cEEEeccCCchhhh
Q 014324          161 NLLVAADGCLSSIR  174 (426)
Q Consensus       161 d~vI~AdG~~S~vR  174 (426)
                      |+||.|+|..|.-+
T Consensus       149 d~lV~AtG~~s~p~  162 (549)
T 4ap3_A          149 RFLVVAAGPLSNAN  162 (549)
T ss_dssp             EEEEECCCSEEECC
T ss_pred             CEEEECcCCCCCCC
Confidence            99999999876443

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=99.18  E-value=1.3e-10  Score=116.40  Aligned_cols=165  Identities=20%  Similarity=0.177  Sum_probs=88.7

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCC-CcceeccC-----------hhHHHHHHHH---hcC--
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSP-TGAGLGLD-----------RPAQRIIQSW---LNG--   67 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~-~~~~~~l~-----------~~~~~~l~~~---~~~--   67 (426)
                      ..+||+|||||++||++|+.|+++|.+|+|+||.+.++..+. .+.++...           .....+++.+   +..  
T Consensus       125 ~~~~v~viG~G~aG~~aa~~~~~~g~~v~~~e~~~~~~~~~~~a~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~g~~~~  204 (572)
T 1d4d_A          125 ETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGRNIN  204 (572)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHSSSCCEEEECSSSSSCTTGGGCCSCEECCSSSTTGGGTCCCCTHHHHHHHHHHTTTCS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcchhhhCCeeEccCCHHHHHhCCCCCHHHHHHHHHHhcCCCC
Confidence            357999999999999999999999999999999988753221 11122111           0111111111   100  


Q ss_pred             Cc--------------hhhhccCcceeeccccccccccccccccccCCCcchhccHHHHHHHHHhcCC-CCe-eEeeeeE
Q 014324           68 RP--------------HLLHLATVPLTIDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALP-PEI-FLRGHQY  131 (426)
Q Consensus        68 ~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v  131 (426)
                      ..              +.+.+.+.+...  .....+..+......    .........+.+.|.+.+. .|+ |++++++
T Consensus       205 ~~~~v~~~~~~~~~~i~~l~~~Gv~~~~--~~~~gg~~~~r~~~~----~~~~~~g~~l~~~L~~~~~~~gv~i~~~t~v  278 (572)
T 1d4d_A          205 DPELVKVLANNSSDSIDWLTSMGADMTD--VGRMGGASVNRSHRP----TGGAGVGAHVAQVLWDNAVKRGTDIRLNSRV  278 (572)
T ss_dssp             CHHHHHHHHHTHHHHHHHHHHHTCCCCE--EECCTTCSSCCEEES----TTTCCHHHHHHHHHHHHHHHTTCEEESSEEE
T ss_pred             CHHHHHHHHHccHHHHHHHHhcCCcccc--ccccCCCcCCeeEec----CCCCCCHHHHHHHHHHHHHHcCCeEEecCEE
Confidence            00              001111111100  000001000000000    0001223556666766554 488 9999999


Q ss_pred             EEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCchhhhhh
Q 014324          132 LSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSIRQS  176 (426)
Q Consensus       132 ~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~vR~~  176 (426)
                      +++..++++..+.|.+. ..+|+..++.||.||.|+|.+|..++.
T Consensus       279 ~~l~~~~~g~v~GV~~~-~~~G~~~~i~A~~VVlAtGg~~~~~~~  322 (572)
T 1d4d_A          279 VRILEDASGKVTGVLVK-GEYTGYYVIKADAVVIAAGGFAKNNER  322 (572)
T ss_dssp             EEEEEC--CCEEEEEEE-ETTTEEEEEECSEEEECCCCCTTCHHH
T ss_pred             EEEEECCCCeEEEEEEE-eCCCcEEEEEcCEEEEeCCCCccCHHH
Confidence            99986432332334432 246776679999999999999976544

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=99.17  E-value=2.1e-10  Score=115.12  Aligned_cols=64  Identities=22%  Similarity=0.195  Sum_probs=45.4

Q ss_pred             HHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCchhh
Q 014324          110 ADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSI  173 (426)
Q Consensus       110 ~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~v  173 (426)
                      ..+.+.|.+.+. .++ |++++.++++..++++....|.+.+..+|+...+.|+.||.|+|..|.+
T Consensus       143 ~~l~~~L~~~~~~~gv~i~~~~~v~~L~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGg~~~~  208 (588)
T 2wdq_A          143 HALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAGRI  208 (588)
T ss_dssp             HHHHHHHHHHHHHTTCEEEETEEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEEEECCCCCGGG
T ss_pred             HHHHHHHHHHHHhCCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCeEEEEEcCEEEECCCCCccc
Confidence            345555665543 488 9999999999874333333455444467876679999999999999864

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=99.17  E-value=1.2e-11  Score=118.83  Aligned_cols=37  Identities=27%  Similarity=0.502  Sum_probs=33.8

Q ss_pred             CccEEEEcCChHHHHHHHHHHHc--CCcEEEEcccCCCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRA--GWDVVVLEKAGGPP   42 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~--G~~v~v~E~~~~~~   42 (426)
                      .+||+|||||++|+++|+.|+++  |++|+|||+.....
T Consensus        36 ~~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~~~~~   74 (405)
T 3c4n_A           36 AFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGLPN   74 (405)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSCSSC
T ss_pred             cCCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCCCC
Confidence            48999999999999999999999  99999999986543

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=99.15  E-value=4e-10  Score=111.84  Aligned_cols=154  Identities=14%  Similarity=0.138  Sum_probs=87.2

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccC-CCCCCCCCccee-ccC-hhHHHHHHHHhcCCchhhhccCcceee
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAG-GPPTGSPTGAGL-GLD-RPAQRIIQSWLNGRPHLLHLATVPLTI   81 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~-~~~~~~~~~~~~-~l~-~~~~~~l~~~~~~~~~~~~~~~~~~~~   81 (426)
                      .++||+|||||+||+++|+.|++.|.+|+|+|+.. ..+... +.... ++. ....+.++.++..........+..+..
T Consensus        26 ~~yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~~~iG~~~-Cnps~GGia~g~lv~eldalgg~~~~~~d~~gi~f~~  104 (637)
T 2zxi_A           26 DEFDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIGQMS-CNPAIGGIAKGIVVREIDALGGEMGKAIDQTGIQFKM  104 (637)
T ss_dssp             GCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCC-SCSEEECTTHHHHHHHHHHHTCSHHHHHHHHEEEEEE
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCCEEEEEecccccCCcC-ccccccccchHHHHHHHHHhhhHHHHHhhhcccceee
Confidence            35899999999999999999999999999999985 332111 11011 111 122333444432101111111111110


Q ss_pred             ccccccccccccccccccCCCcchhccHHHHHHHHHhcCC--CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEE
Q 014324           82 DQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALP--PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEI  158 (426)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~--~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~  158 (426)
                        .....+..+        ...-..+++..+.+.|.+.++  .++ + ++++|+++..++ +..+.|.   ..+|..  +
T Consensus       105 --l~~~kGpav--------~~~r~~~Dr~~~~~~L~~~Le~~~GVeI-~~~~Vt~L~~e~-g~V~GV~---t~dG~~--i  167 (637)
T 2zxi_A          105 --LNTRKGKAV--------QSPRAQADKKRYREYMKKVCENQENLYI-KQEEVVDIIVKN-NQVVGVR---TNLGVE--Y  167 (637)
T ss_dssp             --ESTTSCGGG--------CEEEEEECHHHHHHHHHHHHHTCTTEEE-EESCEEEEEESS-SBEEEEE---ETTSCE--E
T ss_pred             --cccccCccc--------cchhhhCCHHHHHHHHHHHHHhCCCCEE-EEeEEEEEEecC-CEEEEEE---ECCCcE--E
Confidence              000001000        000123466777777777664  377 6 678999987643 2222344   567754  8


Q ss_pred             eecEEEeccCCchhhhhh
Q 014324          159 KGNLLVAADGCLSSIRQS  176 (426)
Q Consensus       159 ~~d~vI~AdG~~S~vR~~  176 (426)
                      +||.||.|+|.+|..+..
T Consensus       168 ~AdaVVLATG~~s~~~~~  185 (637)
T 2zxi_A          168 KTKAVVVTTGTFLNGVIY  185 (637)
T ss_dssp             ECSEEEECCTTCBTCEEE
T ss_pred             EeCEEEEccCCCccCcee
Confidence            999999999998876543

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=99.13  E-value=6.2e-10  Score=111.87  Aligned_cols=163  Identities=17%  Similarity=0.133  Sum_probs=88.1

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCC-Ccceec--cC---hhHHH-HHHH-H--h--cC------
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSP-TGAGLG--LD---RPAQR-IIQS-W--L--NG------   67 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~-~~~~~~--l~---~~~~~-~l~~-~--~--~~------   67 (426)
                      .+||+|||||+|||++|+.|+++|.+|+|+||....+..+. ...|+.  +.   +...+ .+.. +  +  ..      
T Consensus        18 ~~DVvVVG~G~AGl~AAl~aa~~G~~V~vlEK~~~~~g~s~~a~GGi~a~~~~~~~ds~~~~~~dtl~~g~~l~d~~~v~   97 (621)
T 2h88_A           18 EFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMEDDNWRWHFYDTVKGSDWLGDQDAIH   97 (621)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCGGGSGGGGCCSCEECCCCSSSCCCHHHHHHHHHHHTTTCSCHHHHH
T ss_pred             cCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCCchhhCCCcEecCCCCCCCCHHHHHHHHHHhcCCCCCHHHHH
Confidence            47999999999999999999999999999999875432210 111221  11   11111 1111 0  0  00      


Q ss_pred             --------CchhhhccCcceeecccccccccccccccccc-CC--------Ccchh--ccHHHHHHHHHhcCC-CCe-eE
Q 014324           68 --------RPHLLHLATVPLTIDQNQATDNAKVTRTLARD-DN--------FNFRA--AHWADLHGLLYNALP-PEI-FL  126 (426)
Q Consensus        68 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--------~~~~~--~~r~~l~~~L~~~~~-~~~-i~  126 (426)
                              ..+.+...+.++..    ...+.......... ..        .....  ..-..+.+.|.+.+. .++ |+
T Consensus        98 ~l~~~s~~~i~~L~~~Gv~f~~----~~~g~~~~~~~gg~s~~~g~~~~~~R~~~~~d~tG~~l~~~L~~~~~~~gv~i~  173 (621)
T 2h88_A           98 YMTEQAPAAVIELENYGMPFSR----TEEGKIYQRAFGGQSLQFGKGGQAHRCCCVADRTGHSLLHTLYGRSLRYDTSYF  173 (621)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCB----CTTSSBCEECCTTCBSTTTTSCBCCCEECSTTCHHHHHHHHHHHHHTTSCCEEE
T ss_pred             HHHHHHHHHHHHHHHcCCCccc----CCCCceeccccCcccccccCCCcceeEEEecCCCHHHHHHHHHHHHHhCCCEEE
Confidence                    00112222222211    01111000000000 00        00000  012356666766554 588 99


Q ss_pred             eeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCchhh
Q 014324          127 RGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSI  173 (426)
Q Consensus       127 ~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~v  173 (426)
                      .++.++++..+ ++....|.+.+..+|+...+.|+.||.|+|..|.+
T Consensus       174 ~~~~v~~Li~~-~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~~~  219 (621)
T 2h88_A          174 VEYFALDLLME-NGECRGVIALCIEDGTIHRFRAKNTVIATGGYGRT  219 (621)
T ss_dssp             ETEEEEEEEEE-TTEEEEEEEEETTTCCEEEEEEEEEEECCCCCGGG
T ss_pred             EceEEEEEEEE-CCEEEEEEEEEcCCCcEEEEEcCeEEECCCccccc
Confidence            99999999864 33233344444467877679999999999999875

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=99.13  E-value=4.8e-10  Score=103.29  Aligned_cols=37  Identities=16%  Similarity=0.269  Sum_probs=32.6

Q ss_pred             CCCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccC
Q 014324            3 KKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAG   39 (426)
Q Consensus         3 ~~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~   39 (426)
                      .|++|||+||||||||++||+.|+++|++|+|||+..
T Consensus         3 ~M~~yDVvIIGaGpAGlsAA~~lar~g~~v~lie~~~   39 (304)
T 4fk1_A            3 AMKYIDCAVIGAGPAGLNASLVLGRARKQIALFDNNT   39 (304)
T ss_dssp             ---CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred             CCCCcCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            4788999999999999999999999999999999864

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=99.13  E-value=4.3e-08  Score=96.04  Aligned_cols=63  Identities=22%  Similarity=0.218  Sum_probs=48.1

Q ss_pred             CCCccEEEEcCChHHHHHHHHHHHcC--CcEEEEcccCCCCCCCC----------Ccc--eeccChhHHHHHHHHhc
Q 014324            4 KEKGKAVIVGGSIAGISCAHALLRAG--WDVVVLEKAGGPPTGSP----------TGA--GLGLDRPAQRIIQSWLN   66 (426)
Q Consensus         4 ~~~~~V~IvGaG~aGl~~A~~L~~~G--~~v~v~E~~~~~~~~~~----------~~~--~~~l~~~~~~~l~~~~~   66 (426)
                      |.++||+|||||++||++|+.|+++|  ++|+|+|++..++....          .|.  .....+...++++++|+
T Consensus         2 m~~~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~~GG~~~~~~~~g~~~~~g~~~~~~~~~~~~~l~~~lg~   78 (475)
T 3lov_A            2 MSSKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGGKVATYREDGFTIERGPDSYVARKHILTDLIEAIGL   78 (475)
T ss_dssp             CCSCEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSSSBTTCCEECSTTCCEESSCCCEETTSTHHHHHHHHTTC
T ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCCCCceeEEEeeCCEEEecCchhhhcccHHHHHHHHHcCC
Confidence            34589999999999999999999999  99999999887653110          111  12335677888888887

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=99.13  E-value=2.2e-09  Score=101.47  Aligned_cols=39  Identities=28%  Similarity=0.504  Sum_probs=35.1

Q ss_pred             CCCCCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            1 MEKKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         1 m~~~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ||. .++||+|||||++|+++|+.|+++|++|+|+||...
T Consensus         2 ~m~-~~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~~   40 (363)
T 1c0p_A            2 MMH-SQKRVVVLGSGVIGLSSALILARKGYSVHILARDLP   40 (363)
T ss_dssp             CCC-CSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCT
T ss_pred             CCC-CCCCEEEECCCHHHHHHHHHHHhCCCEEEEEeccCC
Confidence            443 568999999999999999999999999999999864

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=99.12  E-value=2.2e-10  Score=108.67  Aligned_cols=36  Identities=25%  Similarity=0.373  Sum_probs=33.9

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP   41 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   41 (426)
                      ++||+|||||++|+++|+.|+++|++|+|+|+....
T Consensus         2 ~~dvvIIG~Gi~Gl~~A~~La~~G~~V~vle~~~~~   37 (372)
T 2uzz_A            2 KYDLIIIGSGSVGAAAGYYATRAGLNVLMTDAHMPP   37 (372)
T ss_dssp             CEEEEESCTTHHHHHHHHHHHHTTCCEEEECSSCSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            479999999999999999999999999999998765

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=99.11  E-value=3.3e-10  Score=114.65  Aligned_cols=62  Identities=11%  Similarity=0.071  Sum_probs=44.5

Q ss_pred             HHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCchhh
Q 014324          111 DLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSI  173 (426)
Q Consensus       111 ~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~v  173 (426)
                      .+...|.+.+. .++ |+.++.++++..++ +....|.+.+..+|+...+.|+.||.|+|..+.+
T Consensus       159 ~l~~~L~~~a~~~gv~i~~~~~v~~L~~~~-g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~~~  222 (660)
T 2bs2_A          159 TMLFAVANECLKLGVSIQDRKEAIALIHQD-GKCYGAVVRDLVTGDIIAYVAKGTLIATGGYGRI  222 (660)
T ss_dssp             HHHHHHHHHHHHHTCEEECSEEEEEEEEET-TEEEEEEEEETTTCCEEEEECSEEEECCCCCGGG
T ss_pred             HHHHHHHHHHHhCCCEEEECcEEEEEEecC-CEEEEEEEEECCCCcEEEEEcCEEEEccCcchhh
Confidence            45556666554 488 99999999998643 3223344444467877679999999999999875

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=99.11  E-value=4.4e-10  Score=111.92  Aligned_cols=149  Identities=11%  Similarity=0.139  Sum_probs=84.3

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC-CCCCCCCcceeccC----hhHHHHHHHHhcCCchhhhccCcce
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG-PPTGSPTGAGLGLD----RPAQRIIQSWLNGRPHLLHLATVPL   79 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~-~~~~~~~~~~~~l~----~~~~~~l~~~~~~~~~~~~~~~~~~   79 (426)
                      ..+||+|||||+||+++|+.|++.|.+|+|+|+... ++.   .++.-.+.    ....+.+..++..........+..+
T Consensus        20 ~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~---~~c~ps~gGia~~~lv~el~al~g~~~~~~d~~gi~f   96 (641)
T 3cp8_A           20 HMYDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSAVAR---MSCNPAIGGVAKGQITREIDALGGEMGKAIDATGIQF   96 (641)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTC---CSSCSEEECHHHHHHHHHHHHHTCSHHHHHHHHEEEE
T ss_pred             CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEecccccCC---CccccchhhhhHHHHHHHHHhcccHHHHHHHhcCCch
Confidence            468999999999999999999999999999999852 321   11111111    1122222322210001111111111


Q ss_pred             eeccccccccccccccccccCCCcchhccHHHHHHHHHhcCC--CCe-eEeeeeEEEEEEecCCceEE-EEEEeccCCce
Q 014324           80 TIDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALP--PEI-FLRGHQYLSFCISEVKTTVT-VKAKVLQTDEV  155 (426)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~--~~~-i~~~~~v~~~~~~~~~~~v~-v~~~~~~~g~~  155 (426)
                      ..  .....+..+        ...-..+++..+.+.|.+.++  .++ + ++..|+++..+++  .|. |.   ..+|..
T Consensus        97 ~~--l~~~kgpav--------~~~r~~~Dr~~l~~~L~~~l~~~~GV~I-~~~~V~~L~~d~g--~V~GV~---t~~G~~  160 (641)
T 3cp8_A           97 RM--LNRSKGPAM--------HSPRAQADKTQYSLYMRRIVEHEPNIDL-LQDTVIGVSANSG--KFSSVT---VRSGRA  160 (641)
T ss_dssp             EE--ECSSSCTTT--------CEEEEEECHHHHHHHHHHHHHTCTTEEE-EECCEEEEEEETT--EEEEEE---ETTSCE
T ss_pred             hh--cccccCccc--------cchhhhcCHHHHHHHHHHHHHhCCCCEE-EeeEEEEEEecCC--EEEEEE---ECCCcE
Confidence            10  000000000        001124567777777777664  377 6 5668998876433  443 54   567764


Q ss_pred             EEEeecEEEeccCCchhhh
Q 014324          156 IEIKGNLLVAADGCLSSIR  174 (426)
Q Consensus       156 ~~~~~d~vI~AdG~~S~vR  174 (426)
                        ++||.||.|||.++..+
T Consensus       161 --i~Ad~VVLATG~~s~~~  177 (641)
T 3cp8_A          161 --IQAKAAILACGTFLNGL  177 (641)
T ss_dssp             --EEEEEEEECCTTCBTCE
T ss_pred             --EEeCEEEECcCCCCCcc
Confidence              89999999999987644

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=99.11  E-value=1.1e-10  Score=108.85  Aligned_cols=119  Identities=13%  Similarity=0.081  Sum_probs=72.9

Q ss_pred             CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecc
Q 014324            4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQ   83 (426)
Q Consensus         4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~   83 (426)
                      |..+||+||||||+|+++|+.|++.|++|+|||+......  ..+..+...               ..+.        ..
T Consensus         6 ~~~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~~~--~~gg~~~~~---------------~~~~--------~~   60 (333)
T 1vdc_A            6 THNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDI--APGGQLTTT---------------TDVE--------NF   60 (333)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTB--CTTCGGGGC---------------SEEC--------CS
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCcccc--CCCceeeec---------------cccc--------cC
Confidence            4568999999999999999999999999999998321100  011111000               0000        00


Q ss_pred             ccccccccccccccccCCCcchhccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeec
Q 014324           84 NQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGN  161 (426)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d  161 (426)
                          .            .++ ..+.+..+.+.|.+.+. .++ +++++ ++++..  +...++++   . +|.  ++++|
T Consensus        61 ----~------------~~~-~~~~~~~~~~~l~~~~~~~gv~~~~~~-v~~i~~--~~~~~~v~---~-~~~--~~~~~  114 (333)
T 1vdc_A           61 ----P------------GFP-EGILGVELTDKFRKQSERFGTTIFTET-VTKVDF--SSKPFKLF---T-DSK--AILAD  114 (333)
T ss_dssp             ----T------------TCT-TCEEHHHHHHHHHHHHHHTTCEEECCC-CCEEEC--SSSSEEEE---C-SSE--EEEEE
T ss_pred             ----C------------CCc-cCCCHHHHHHHHHHHHHHCCCEEEEeE-EEEEEE--cCCEEEEE---E-CCc--EEEcC
Confidence                0            000 01334556565655443 467 77776 887774  33456665   4 554  38999


Q ss_pred             EEEeccCCchhh
Q 014324          162 LLVAADGCLSSI  173 (426)
Q Consensus       162 ~vI~AdG~~S~v  173 (426)
                      .||.|+|.++..
T Consensus       115 ~vv~A~G~~~~~  126 (333)
T 1vdc_A          115 AVILAIGAVAKR  126 (333)
T ss_dssp             EEEECCCEEECC
T ss_pred             EEEECCCCCcCC
Confidence            999999998654

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=99.10  E-value=3.1e-10  Score=105.23  Aligned_cols=110  Identities=15%  Similarity=0.080  Sum_probs=71.4

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ   85 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   85 (426)
                      .+||+||||||+|+++|+.|+++|++|+|||+.  ++      ..+...                     .....     
T Consensus        15 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~--~g------g~~~~~---------------------~~~~~-----   60 (323)
T 3f8d_A           15 KFDVIIVGLGPAAYGAALYSARYMLKTLVIGET--PG------GQLTEA---------------------GIVDD-----   60 (323)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS--TT------GGGGGC---------------------CEECC-----
T ss_pred             ccCEEEECccHHHHHHHHHHHHCCCcEEEEecc--CC------Ceeccc---------------------ccccc-----
Confidence            579999999999999999999999999999998  32      111000                     00000     


Q ss_pred             ccccccccccccccCCCcchhccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEE
Q 014324           86 ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLL  163 (426)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~v  163 (426)
                       ..              .+..+....+.+.+.+.+. .++ +++ ++++++..++  ..+.++   ..+|..  +++|.|
T Consensus        61 -~~--------------~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v~~i~~~~--~~~~v~---~~~g~~--~~~d~l  117 (323)
T 3f8d_A           61 -YL--------------GLIEIQASDMIKVFNKHIEKYEVPVLL-DIVEKIENRG--DEFVVK---TKRKGE--FKADSV  117 (323)
T ss_dssp             -ST--------------TSTTEEHHHHHHHHHHHHHTTTCCEEE-SCEEEEEEC----CEEEE---ESSSCE--EEEEEE
T ss_pred             -cC--------------CCCCCCHHHHHHHHHHHHHHcCCEEEE-EEEEEEEecC--CEEEEE---ECCCCE--EEcCEE
Confidence             00              0001233555555555443 366 777 8999988543  345555   456654  899999


Q ss_pred             EeccCCchh
Q 014324          164 VAADGCLSS  172 (426)
Q Consensus       164 I~AdG~~S~  172 (426)
                      |.|+|....
T Consensus       118 vlAtG~~~~  126 (323)
T 3f8d_A          118 ILGIGVKRR  126 (323)
T ss_dssp             EECCCCEEC
T ss_pred             EECcCCCCc
Confidence            999998743

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=99.08  E-value=5.8e-10  Score=109.05  Aligned_cols=151  Identities=15%  Similarity=0.015  Sum_probs=82.6

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcC-----CcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCccee
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAG-----WDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLT   80 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G-----~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~   80 (426)
                      .+||+||||||+|+++|..|+++|     ++|+|||+.+.++..    .+..+....      +.......+.....+..
T Consensus        30 ~~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g~~----~~~~~~~~~------~~~~~~~~l~~~~~p~~   99 (463)
T 3s5w_A           30 VHDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWH----GNTLVSQSE------LQISFLKDLVSLRNPTS   99 (463)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCCSS----GGGCCSSCB------CSSCTTSSSSTTTCTTC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCCCc----CCCCCCCCc------CCcchhhccccccCCCC
Confidence            469999999999999999999999     999999999976421    111000000      00000000000000000


Q ss_pred             e-ccc-c-ccccccccccccccCCCcchhccHHHHHHHHHhcCCC-Ce-eEeeeeEEEEEEecCC-ce--EEEEEEeccC
Q 014324           81 I-DQN-Q-ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPP-EI-FLRGHQYLSFCISEVK-TT--VTVKAKVLQT  152 (426)
Q Consensus        81 ~-~~~-~-~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~-~~-i~~~~~v~~~~~~~~~-~~--v~v~~~~~~~  152 (426)
                      . .+. + ...+... ..    .......+.+..+.++|...+.. ++ ++++++|++++..++. ..  ++|+..+ .+
T Consensus       100 ~~~~~~~l~~~~~~~-~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~-g~  173 (463)
T 3s5w_A          100 PYSFVNYLHKHDRLV-DF----INLGTFYPCRMEFNDYLRWVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRN-AD  173 (463)
T ss_dssp             TTSHHHHHHHTTCHH-HH----HHHCCSCCBHHHHHHHHHHHHTTCTTTEEESEEEEEEEEEEETTEEEEEEEEEEE-TT
T ss_pred             CCChhHhhhhcCcee-ec----ccccCCCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEecCCCceEEEEEEEec-CC
Confidence            0 000 0 0000000 00    00011224567788888776554 66 9999999999875322 22  3555322 22


Q ss_pred             CceEEEeecEEEeccCCchh
Q 014324          153 DEVIEIKGNLLVAADGCLSS  172 (426)
Q Consensus       153 g~~~~~~~d~vI~AdG~~S~  172 (426)
                      |+..+++||.||.|+|....
T Consensus       174 g~~~~~~~d~lVlAtG~~p~  193 (463)
T 3s5w_A          174 GEELVRTTRALVVSPGGTPR  193 (463)
T ss_dssp             SCEEEEEESEEEECCCCEEC
T ss_pred             CceEEEEeCEEEECCCCCCC
Confidence            44446899999999998544

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=99.08  E-value=1.7e-10  Score=107.53  Aligned_cols=120  Identities=12%  Similarity=0.040  Sum_probs=79.5

Q ss_pred             CCC-CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcce
Q 014324            1 MEK-KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPL   79 (426)
Q Consensus         1 m~~-~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~   79 (426)
                      ||. +..+||+||||||+|+++|+.|+++|++|+|||+.+.++      ..+          ..+-+  ...+.      
T Consensus         1 M~~~~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~g------G~~----------~~~~~--~~~~~------   56 (332)
T 3lzw_A            1 MREDTKVYDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLG------GQL----------SALYP--EKYIY------   56 (332)
T ss_dssp             CEEEEEEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC------HHH----------HHHCT--TSEEC------
T ss_pred             CCCCCccceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCC------cee----------hhcCC--CceEe------
Confidence            543 345899999999999999999999999999999998742      111          00000  00000      


Q ss_pred             eeccccccccccccccccccCCCcchhccHHHHHHHHHhcCCC-Ce-eEeeeeEEEEEEecCCceEEEEEEeccCCceEE
Q 014324           80 TIDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPP-EI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIE  157 (426)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~-~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~  157 (426)
                            .              ...+..+....+...+.+.+.. ++ ++++++|+++....+ ..+.++   ..+|+   
T Consensus        57 ------~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~~v~---~~~g~---  109 (332)
T 3lzw_A           57 ------D--------------VAGFPKIRAQELINNLKEQMAKFDQTICLEQAVESVEKQAD-GVFKLV---TNEET---  109 (332)
T ss_dssp             ------C--------------STTCSSEEHHHHHHHHHHHHTTSCCEEECSCCEEEEEECTT-SCEEEE---ESSEE---
T ss_pred             ------c--------------cCCCCCCCHHHHHHHHHHHHHHhCCcEEccCEEEEEEECCC-CcEEEE---ECCCE---
Confidence                  0              0001113346666667666554 77 889999999986433 355555   45554   


Q ss_pred             EeecEEEeccCCch
Q 014324          158 IKGNLLVAADGCLS  171 (426)
Q Consensus       158 ~~~d~vI~AdG~~S  171 (426)
                      +.+|.||.|+|..|
T Consensus       110 ~~~d~vVlAtG~~~  123 (332)
T 3lzw_A          110 HYSKTVIITAGNGA  123 (332)
T ss_dssp             EEEEEEEECCTTSC
T ss_pred             EEeCEEEECCCCCc
Confidence            79999999999965

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=99.08  E-value=9.8e-10  Score=100.56  Aligned_cols=110  Identities=15%  Similarity=0.099  Sum_probs=72.5

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccccc
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQA   86 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   86 (426)
                      +||+||||||+|+++|..|+++|++|+|||+.....      . +.                 ..  ...++        
T Consensus         3 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~~------~-~~-----------------~~--~~~~~--------   48 (297)
T 3fbs_A            3 FDVIIIGGSYAGLSAALQLGRARKNILLVDAGERRN------R-FA-----------------SH--SHGFL--------   48 (297)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCCGG------G-GC-----------------SC--CCSST--------
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCccc------c-cc-----------------hh--hcCCc--------
Confidence            799999999999999999999999999999875311      0 00                 00  00000        


Q ss_pred             cccccccccccccCCCcchhccHHHHHHHHHhcCCC--CeeEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEE
Q 014324           87 TDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPP--EIFLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLV  164 (426)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~--~~i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI  164 (426)
                                      .........+.+.+.+.+..  ++....++++++..+++  .+.++   +.+|++  +++|.||
T Consensus        49 ----------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~--~~~v~---~~~g~~--~~~d~vv  105 (297)
T 3fbs_A           49 ----------------GQDGKAPGEIIAEARRQIERYPTIHWVEGRVTDAKGSFG--EFIVE---IDGGRR--ETAGRLI  105 (297)
T ss_dssp             ----------------TCTTCCHHHHHHHHHHHHTTCTTEEEEESCEEEEEEETT--EEEEE---ETTSCE--EEEEEEE
T ss_pred             ----------------CCCCCCHHHHHHHHHHHHHhcCCeEEEEeEEEEEEEcCC--eEEEE---ECCCCE--EEcCEEE
Confidence                            00112235555556655543  45334668999986543  45555   567764  8999999


Q ss_pred             eccCCchhh
Q 014324          165 AADGCLSSI  173 (426)
Q Consensus       165 ~AdG~~S~v  173 (426)
                      .|+|..+..
T Consensus       106 iAtG~~~~~  114 (297)
T 3fbs_A          106 LAMGVTDEL  114 (297)
T ss_dssp             ECCCCEEEC
T ss_pred             ECCCCCCCC
Confidence            999997644

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=99.07  E-value=3.1e-10  Score=105.96  Aligned_cols=121  Identities=14%  Similarity=0.138  Sum_probs=74.1

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccc
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQN   84 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~   84 (426)
                      ..+||+||||||+|+++|+.|+++|++|+|||+.+....  ..|..+....                      .  ..  
T Consensus        21 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~--~~gg~~~~~~----------------------~--~~--   72 (338)
T 3itj_A           21 VHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGI--AAGGQLTTTT----------------------E--IE--   72 (338)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTB--CTTCGGGGSS----------------------E--EC--
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCC--CcCcccccch----------------------h--hc--
Confidence            458999999999999999999999999999999762111  1111110000                      0  00  


Q ss_pred             cccccccccccccccCCCcchhccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecE
Q 014324           85 QATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNL  162 (426)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~  162 (426)
                      .+ .+            ++ ..+.+..+...|.+.+. .++ +++++ ++++..  +...+.++.....++..  +.+|.
T Consensus        73 ~~-~~------------~~-~~~~~~~~~~~~~~~~~~~gv~i~~~~-v~~i~~--~~~~~~v~~~~~~~~~~--~~~d~  133 (338)
T 3itj_A           73 NF-PG------------FP-DGLTGSELMDRMREQSTKFGTEIITET-VSKVDL--SSKPFKLWTEFNEDAEP--VTTDA  133 (338)
T ss_dssp             CS-TT------------CT-TCEEHHHHHHHHHHHHHHTTCEEECSC-EEEEEC--SSSSEEEEETTCSSSCC--EEEEE
T ss_pred             cc-CC------------Cc-ccCCHHHHHHHHHHHHHHcCCEEEEeE-EEEEEE--cCCEEEEEEEecCCCcE--EEeCE
Confidence            00 00            00 01233555555555444 377 88888 888874  44456655211134444  89999


Q ss_pred             EEeccCCchh
Q 014324          163 LVAADGCLSS  172 (426)
Q Consensus       163 vI~AdG~~S~  172 (426)
                      ||.|+|..+.
T Consensus       134 vvlAtG~~~~  143 (338)
T 3itj_A          134 IILATGASAK  143 (338)
T ss_dssp             EEECCCEEEC
T ss_pred             EEECcCCCcC
Confidence            9999998654

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=99.05  E-value=3.6e-08  Score=98.57  Aligned_cols=37  Identities=24%  Similarity=0.318  Sum_probs=34.2

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP   41 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   41 (426)
                      ..+||+|||||++|+++|+.|+++|++|+|+|+....
T Consensus        31 ~~~DVvVIGgGi~G~~~A~~La~rG~~V~LlE~~~~~   67 (571)
T 2rgh_A           31 EELDLLIIGGGITGAGVAVQAAASGIKTGLIEMQDFA   67 (571)
T ss_dssp             SCBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTT
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            4689999999999999999999999999999998644

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=99.04  E-value=3.5e-10  Score=114.42  Aligned_cols=62  Identities=15%  Similarity=0.120  Sum_probs=43.1

Q ss_pred             HHHHHHhcCC---CCe-eEeeeeEEEEEEecC--CceEEEEEEeccCCceEEEeecEEEeccCCchhh
Q 014324          112 LHGLLYNALP---PEI-FLRGHQYLSFCISEV--KTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSI  173 (426)
Q Consensus       112 l~~~L~~~~~---~~~-i~~~~~v~~~~~~~~--~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~v  173 (426)
                      +.+.|.+.+.   .++ |+.++.++++..+++  +..+.|...+..+|+...+.|+.||.|+|..+.+
T Consensus       168 i~~~L~~~a~~~~~gV~i~~~~~v~dLi~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVLATGG~g~~  235 (662)
T 3gyx_A          168 YKVIVAEAAKNALGQDRIIERIFIVKLLLDKNTPNRIAGAVGFNLRANEVHIFKANAMVVACGGAVNV  235 (662)
T ss_dssp             HHHHHHHHHHHHHCTTTEECSEEECCCEECSSSTTBEEEEEEEESSSSCEEEEECSEEEECCCCBCSS
T ss_pred             HHHHHHHHHHhcCCCcEEEEceEEEEEEEeCCccceEEEEEEEEcCCCcEEEEEeCEEEECCCccccc
Confidence            4444444432   277 999999999887543  1334454444567877779999999999999864

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=99.03  E-value=9.2e-10  Score=101.59  Aligned_cols=113  Identities=13%  Similarity=0.119  Sum_probs=73.1

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCC-cEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGW-DVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ   85 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   85 (426)
                      +||+||||||+|+++|+.|++.|+ +|+|||+. .++      ..+....               .+.           .
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~-~~g------g~~~~~~---------------~~~-----------~   48 (311)
T 2q0l_A            2 IDCAIIGGGPAGLSAGLYATRGGVKNAVLFEKG-MPG------GQITGSS---------------EIE-----------N   48 (311)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCSSEEEECSS-STT------CGGGGCS---------------CBC-----------C
T ss_pred             ceEEEECccHHHHHHHHHHHHCCCCcEEEEcCC-CCC------ccccccc---------------ccc-----------c
Confidence            699999999999999999999999 99999995 221      1110000               000           0


Q ss_pred             ccccccccccccccCCCcchhccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEE
Q 014324           86 ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLL  163 (426)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~v  163 (426)
                      + .+            .+ ..+++..+.+.|.+.+. .++ +++ ++++++..+++  .++++   ..+|+.  +++|.|
T Consensus        49 ~-~~------------~~-~~~~~~~~~~~l~~~~~~~~v~~~~-~~v~~i~~~~~--~~~v~---~~~g~~--~~~~~v  106 (311)
T 2q0l_A           49 Y-PG------------VK-EVVSGLDFMQPWQEQCFRFGLKHEM-TAVQRVSKKDS--HFVIL---AEDGKT--FEAKSV  106 (311)
T ss_dssp             S-TT------------CC-SCBCHHHHHHHHHHHHHTTSCEEEC-SCEEEEEEETT--EEEEE---ETTSCE--EEEEEE
T ss_pred             C-CC------------Cc-ccCCHHHHHHHHHHHHHHcCCEEEE-EEEEEEEEcCC--EEEEE---EcCCCE--EECCEE
Confidence            0 00            00 02344556666655443 366 666 78888886443  45554   456654  899999


Q ss_pred             EeccCCchhhh
Q 014324          164 VAADGCLSSIR  174 (426)
Q Consensus       164 I~AdG~~S~vR  174 (426)
                      |.|+|..+.+.
T Consensus       107 v~AtG~~~~~~  117 (311)
T 2q0l_A          107 IIATGGSPKRT  117 (311)
T ss_dssp             EECCCEEECCC
T ss_pred             EECCCCCCCCC
Confidence            99999876543

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=99.01  E-value=2.1e-08  Score=103.18  Aligned_cols=39  Identities=28%  Similarity=0.381  Sum_probs=35.7

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPT   43 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~   43 (426)
                      ..+||+|||||++|+++|..|++.|++|+|+|+...++.
T Consensus       335 ~~~~v~viG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~gg  373 (776)
T 4gut_A          335 HNKSVIIIGAGPAGLAAARQLHNFGIKVTVLEAKDRIGG  373 (776)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCT
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEecccceec
Confidence            357999999999999999999999999999999887754

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=99.01  E-value=8.7e-10  Score=104.34  Aligned_cols=138  Identities=16%  Similarity=0.163  Sum_probs=76.4

Q ss_pred             CCCccEEEEcCChHHHHHHHHHHHcCC-cEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCccee-e
Q 014324            4 KEKGKAVIVGGSIAGISCAHALLRAGW-DVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLT-I   81 (426)
Q Consensus         4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~-~   81 (426)
                      |.++||+||||||+|+++|..|++.|+ +|+|||+.+ ++.      .+...+..            ..+........ .
T Consensus         2 m~~~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~-~Gg------~~~~~~~~------------~~~~~~~~~~~~~   62 (369)
T 3d1c_A            2 MQHHKVAIIGAGAAGIGMAITLKDFGITDVIILEKGT-VGH------SFKHWPKS------------TRTITPSFTSNGF   62 (369)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS-TTH------HHHTSCTT------------CBCSSCCCCCGGG
T ss_pred             CccCcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCC-CCC------ccccCccc------------ccccCcchhcccC
Confidence            346899999999999999999999999 999999987 321      01000000            00000000000 0


Q ss_pred             ccccccc-cccccccccccCCCcchhccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEE
Q 014324           82 DQNQATD-NAKVTRTLARDDNFNFRAAHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEI  158 (426)
Q Consensus        82 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~  158 (426)
                      ....... .........    .....+.+..+.+.+.+.++ .++ ++++++|+++..+++  .+.|+   ..+|+   +
T Consensus        63 g~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~--~~~v~---~~~g~---~  130 (369)
T 3d1c_A           63 GMPDMNAISMDTSPAFT----FNEEHISGETYAEYLQVVANHYELNIFENTVVTNISADDA--YYTIA---TTTET---Y  130 (369)
T ss_dssp             TCCCTTCSSTTCCHHHH----HCCSSCBHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSS--SEEEE---ESSCC---E
T ss_pred             Cchhhhhcccccccccc----ccccCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEECCC--eEEEE---eCCCE---E
Confidence            0000000 000000000    00112344556566655443 477 889999999986433  45554   44552   7


Q ss_pred             eecEEEeccCCchh
Q 014324          159 KGNLLVAADGCLSS  172 (426)
Q Consensus       159 ~~d~vI~AdG~~S~  172 (426)
                      ++|.||.|+|..+.
T Consensus       131 ~~d~vVlAtG~~~~  144 (369)
T 3d1c_A          131 HADYIFVATGDYNF  144 (369)
T ss_dssp             EEEEEEECCCSTTS
T ss_pred             EeCEEEECCCCCCc
Confidence            89999999999763

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=99.00  E-value=1.3e-09  Score=101.23  Aligned_cols=115  Identities=16%  Similarity=0.139  Sum_probs=71.3

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccc
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQN   84 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~   84 (426)
                      ..+||+||||||+|+++|+.|+++|++|+|||+. .++      ..+....               .+.  ..+      
T Consensus         7 ~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~g------g~~~~~~---------------~~~--~~~------   56 (325)
T 2q7v_A            7 HDYDVVIIGGGPAGLTAAIYTGRAQLSTLILEKG-MPG------GQIAWSE---------------EVE--NFP------   56 (325)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTT------GGGGGCS---------------CBC--CST------
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHcCCcEEEEeCC-CCC------ccccccc---------------ccc--cCC------
Confidence            3589999999999999999999999999999998 321      1111000               000  000      


Q ss_pred             cccccccccccccccCCCcchhccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEec-CCceEEEEEEeccCCceEEEeec
Q 014324           85 QATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALP-PEI-FLRGHQYLSFCISE-VKTTVTVKAKVLQTDEVIEIKGN  161 (426)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~-~~~~v~v~~~~~~~g~~~~~~~d  161 (426)
                          +            ++ ..+.+..+.+.+.+.+. .++ +++ .++.++.... +...+++.   ..+|+.  +++|
T Consensus        57 ----~------------~~-~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~~i~~~~~~~~~~~v~---~~~g~~--~~~~  113 (325)
T 2q7v_A           57 ----G------------FP-EPIAGMELAQRMHQQAEKFGAKVEM-DEVQGVQHDATSHPYPFTV---RGYNGE--YRAK  113 (325)
T ss_dssp             ----T------------CS-SCBCHHHHHHHHHHHHHHTTCEEEE-CCEEEEEECTTSSSCCEEE---EESSCE--EEEE
T ss_pred             ----C------------CC-CCCCHHHHHHHHHHHHHHcCCEEEe-eeEEEEEeccCCCceEEEE---ECCCCE--EEeC
Confidence                0            00 01233455555555443 366 665 6888887641 22114444   345654  8999


Q ss_pred             EEEeccCCchh
Q 014324          162 LLVAADGCLSS  172 (426)
Q Consensus       162 ~vI~AdG~~S~  172 (426)
                      +||.|+|..+.
T Consensus       114 ~vv~AtG~~~~  124 (325)
T 2q7v_A          114 AVILATGADPR  124 (325)
T ss_dssp             EEEECCCEEEC
T ss_pred             EEEECcCCCcC
Confidence            99999998654

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=98.98  E-value=1.1e-09  Score=106.93  Aligned_cols=31  Identities=42%  Similarity=0.580  Sum_probs=30.4

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCcEEEEccc
Q 014324            8 KAVIVGGSIAGISCAHALLRAGWDVVVLEKA   38 (426)
Q Consensus         8 ~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~   38 (426)
                      ||+|||||++|+++|+.|+++|.+|+|+||.
T Consensus         1 DVvVIG~G~AGl~aA~~la~~G~~V~viek~   31 (472)
T 2e5v_A            1 MIYIIGSGIAGLSAGVALRRAGKKVTLISKR   31 (472)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeCC
Confidence            7999999999999999999999999999999

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=98.97  E-value=2.1e-09  Score=99.11  Aligned_cols=113  Identities=17%  Similarity=0.192  Sum_probs=72.7

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ   85 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   85 (426)
                      ++||+||||||+|+++|+.|+++|++|+|+|+..        |..+ ..                   ....+      .
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~li~~~~--------gG~~-~~-------------------~~~~~------~   46 (310)
T 1fl2_A            1 AYDVLIVGSGPAGAAAAIYSARKGIRTGLMGERF--------GGQI-LD-------------------TVDIE------N   46 (310)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTTTCCEEEECSST--------TGGG-GG-------------------CCEEC------C
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC--------Ccee-cc-------------------ccccc------c
Confidence            3799999999999999999999999999998531        1111 00                   00000      0


Q ss_pred             ccccccccccccccCCCcchhccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecC-CceEEEEEEeccCCceEEEeecE
Q 014324           86 ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEV-KTTVTVKAKVLQTDEVIEIKGNL  162 (426)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~-~~~v~v~~~~~~~g~~~~~~~d~  162 (426)
                      +.               ......+..+.+.+.+.+. .++ ++++++++.+..+.+ ...+.++   .++|+.  +++|.
T Consensus        47 ~~---------------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~v~---~~~g~~--~~~~~  106 (310)
T 1fl2_A           47 YI---------------SVPKTEGQKLAGALKVHVDEYDVDVIDSQSASKLIPAAVEGGLHQIE---TASGAV--LKARS  106 (310)
T ss_dssp             BT---------------TBSSEEHHHHHHHHHHHHHTSCEEEECSCCEEEEECCSSTTCCEEEE---ETTSCE--EEEEE
T ss_pred             cc---------------CcCCCCHHHHHHHHHHHHHHcCCeEEccCEEEEEEecccCCceEEEE---ECCCCE--EEeCE
Confidence            00               0001223455555555443 477 899999999875322 2245555   566754  89999


Q ss_pred             EEeccCCchh
Q 014324          163 LVAADGCLSS  172 (426)
Q Consensus       163 vI~AdG~~S~  172 (426)
                      ||.|+|..+.
T Consensus       107 lv~AtG~~~~  116 (310)
T 1fl2_A          107 IIVATGAKWR  116 (310)
T ss_dssp             EEECCCEEEC
T ss_pred             EEECcCCCcC
Confidence            9999998754

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=98.96  E-value=2.6e-09  Score=98.95  Aligned_cols=110  Identities=20%  Similarity=0.218  Sum_probs=69.7

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ   85 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   85 (426)
                      ++||+||||||+|+++|+.|+++|++|+|||+. .+      |..+...+               .+.  ..        
T Consensus        16 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~------gg~~~~~~---------------~~~--~~--------   63 (319)
T 3cty_A           16 DFDVVIVGAGAAGFSAAVYAARSGFSVAILDKA-VA------GGLTAEAP---------------LVE--NY--------   63 (319)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-ST------TGGGGGCS---------------CBC--CB--------
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCCcEEEEeCC-CC------Cccccccc---------------hhh--hc--------
Confidence            479999999999999999999999999999994 22      11111100               000  00        


Q ss_pred             ccccccccccccccCCCcchhccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEE
Q 014324           86 ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLL  163 (426)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~v  163 (426)
                        .+              +..+.+..+.+.+.+.+. .++ +++ .++.++....+  .++++   . ++..  +++|+|
T Consensus        64 --~~--------------~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v~~i~~~~~--~~~v~---~-~~~~--~~~~~l  118 (319)
T 3cty_A           64 --LG--------------FKSIVGSELAKLFADHAANYAKIREG-VEVRSIKKTQG--GFDIE---T-NDDT--YHAKYV  118 (319)
T ss_dssp             --TT--------------BSSBCHHHHHHHHHHHHHTTSEEEET-CCEEEEEEETT--EEEEE---E-SSSE--EEEEEE
T ss_pred             --CC--------------CcccCHHHHHHHHHHHHHHcCCEEEE-eeEEEEEEeCC--EEEEE---E-CCCE--EEeCEE
Confidence              00              001233445555555443 367 666 68888876433  45554   3 4443  899999


Q ss_pred             EeccCCchh
Q 014324          164 VAADGCLSS  172 (426)
Q Consensus       164 I~AdG~~S~  172 (426)
                      |.|+|..+.
T Consensus       119 i~AtG~~~~  127 (319)
T 3cty_A          119 IITTGTTHK  127 (319)
T ss_dssp             EECCCEEEC
T ss_pred             EECCCCCcc
Confidence            999998654

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=98.94  E-value=5.6e-09  Score=105.88  Aligned_cols=36  Identities=28%  Similarity=0.474  Sum_probs=33.2

Q ss_pred             CccEEEEcCChHHHHHHHHHH---H-cCCcEEEEcccCCC
Q 014324            6 KGKAVIVGGSIAGISCAHALL---R-AGWDVVVLEKAGGP   41 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~---~-~G~~v~v~E~~~~~   41 (426)
                      .+||+|||||+|||++|+.|+   + +|.+|+|+||....
T Consensus        22 ~~DVvVIG~G~AGl~AAl~aa~~~~~~G~~V~vlEK~~~~   61 (643)
T 1jnr_A           22 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVE   61 (643)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTT
T ss_pred             cCCEEEECcCHHHHHHHHHHhhhhhhCCCeEEEEeCcCCC
Confidence            479999999999999999999   6 89999999999864

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=98.94  E-value=3.6e-09  Score=97.73  Aligned_cols=35  Identities=26%  Similarity=0.184  Sum_probs=32.8

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      .|||+||||||||+++|+.|+++|++|+|||+...
T Consensus         4 ~yDvvIIG~GpAGl~AA~~la~~g~~v~liE~~~~   38 (314)
T 4a5l_A            4 IHDVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFMA   38 (314)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSG
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Confidence            48999999999999999999999999999998754

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=98.93  E-value=2.1e-09  Score=100.41  Aligned_cols=34  Identities=24%  Similarity=0.308  Sum_probs=31.9

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEccc
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKA   38 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~   38 (426)
                      ..+||+||||||+|+++|+.|++.|++|+|||+.
T Consensus        13 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~   46 (335)
T 2a87_A           13 PVRDVIVIGSGPAGYTAALYAARAQLAPLVFEGT   46 (335)
T ss_dssp             CCEEEEEECCHHHHHHHHHHHHHTTCCCEEECCS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence            4589999999999999999999999999999965

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=98.91  E-value=2.1e-09  Score=105.06  Aligned_cols=34  Identities=18%  Similarity=0.273  Sum_probs=32.4

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEccc
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKA   38 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~   38 (426)
                      .++||+||||||+|+++|+.|++.|++|+|+|+.
T Consensus         2 ~~~dvvIIGaG~aGl~aA~~l~~~G~~V~liE~~   35 (464)
T 2a8x_A            2 THYDVVVLGAGPGGYVAAIRAAQLGLSTAIVEPK   35 (464)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCC
Confidence            3589999999999999999999999999999997

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=98.90  E-value=6.1e-09  Score=103.12  Aligned_cols=115  Identities=16%  Similarity=0.201  Sum_probs=74.6

Q ss_pred             CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecc
Q 014324            4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQ   83 (426)
Q Consensus         4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~   83 (426)
                      +..+||+||||||||+++|+.|+++|++|+|+|+..        |..+ ..                   ..... .   
T Consensus       210 ~~~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~~~--------GG~~-~~-------------------~~~~~-~---  257 (521)
T 1hyu_A          210 RDAYDVLIVGSGPAGAAAAVYSARKGIRTGLMGERF--------GGQV-LD-------------------TVDIE-N---  257 (521)
T ss_dssp             SCCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSST--------TGGG-TT-------------------CSCBC-C---
T ss_pred             cCcccEEEECCcHHHHHHHHHHHhCCCeEEEEECCC--------CCcc-cc-------------------ccccc-c---
Confidence            356899999999999999999999999999998631        1111 00                   00000 0   


Q ss_pred             ccccccccccccccccCCCcchhccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecC-CceEEEEEEeccCCceEEEee
Q 014324           84 NQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEV-KTTVTVKAKVLQTDEVIEIKG  160 (426)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~-~~~v~v~~~~~~~g~~~~~~~  160 (426)
                        +.               ......+..+.+.|.+.+. .++ ++.++++..+..+.+ +..++|+   +++|+.  +++
T Consensus       258 --~~---------------~~~~~~~~~l~~~l~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~V~---~~~g~~--~~~  315 (521)
T 1hyu_A          258 --YI---------------SVPKTEGQKLAGALKAHVSDYDVDVIDSQSASKLVPAATEGGLHQIE---TASGAV--LKA  315 (521)
T ss_dssp             --BT---------------TBSSBCHHHHHHHHHHHHHTSCEEEECSCCEEEEECCSSTTSCEEEE---ETTSCE--EEE
T ss_pred             --cC---------------CCCCCCHHHHHHHHHHHHHHcCCEEEcCCEEEEEEeccCCCceEEEE---ECCCCE--EEc
Confidence              00               0001223455555555543 478 999999999975322 2356665   567764  899


Q ss_pred             cEEEeccCCchh
Q 014324          161 NLLVAADGCLSS  172 (426)
Q Consensus       161 d~vI~AdG~~S~  172 (426)
                      |.||.|+|..+.
T Consensus       316 d~vVlAtG~~~~  327 (521)
T 1hyu_A          316 RSIIIATGAKWR  327 (521)
T ss_dssp             EEEEECCCEEEC
T ss_pred             CEEEECCCCCcC
Confidence            999999998654

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=98.89  E-value=3.7e-09  Score=97.89  Aligned_cols=35  Identities=26%  Similarity=0.333  Sum_probs=32.3

Q ss_pred             CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEccc
Q 014324            4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKA   38 (426)
Q Consensus         4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~   38 (426)
                      |..+||+||||||+|+++|+.|+++|++|+|||+.
T Consensus         3 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~   37 (320)
T 1trb_A            3 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGM   37 (320)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCS
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEccC
Confidence            35689999999999999999999999999999964

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=98.89  E-value=1.8e-09  Score=113.15  Aligned_cols=37  Identities=30%  Similarity=0.606  Sum_probs=33.9

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCC-cEEEEcccCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGW-DVVVLEKAGGP   41 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~~   41 (426)
                      .++||+|||||++|+++|+.|+++|+ +|+|+||...+
T Consensus         3 ~~~dVvIIGgGi~Gls~A~~La~~G~~~V~vlE~~~~~   40 (830)
T 1pj5_A            3 STPRIVIIGAGIVGTNLADELVTRGWNNITVLDQGPLN   40 (830)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSCTT
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCC
Confidence            45899999999999999999999998 99999999864

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=98.89  E-value=7.1e-09  Score=102.11  Aligned_cols=65  Identities=12%  Similarity=0.107  Sum_probs=52.0

Q ss_pred             hccHHHHHHHHHhcCCC-Ce-eEeeeeEEEEEEecCC------ceEEEEEEeccCCceEEEeecEEEeccCCc
Q 014324          106 AAHWADLHGLLYNALPP-EI-FLRGHQYLSFCISEVK------TTVTVKAKVLQTDEVIEIKGNLLVAADGCL  170 (426)
Q Consensus       106 ~~~r~~l~~~L~~~~~~-~~-i~~~~~v~~~~~~~~~------~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~  170 (426)
                      .+.|.++.++|...++. +. |+|+++|++++..+.+      ..++|+..+.++|+..++.|+.||.|+|..
T Consensus       141 ~p~r~E~~~Yl~~~A~~~~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~g~~~~~~ar~vVlatG~~  213 (501)
T 4b63_A          141 LPARLEFEDYMRWCAQQFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVETGEISARRTRKVVIAIGGT  213 (501)
T ss_dssp             CCBHHHHHHHHHHHHHTTGGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEETTTCCEEEEEEEEEEECCCCE
T ss_pred             CCCHHHHHHHHHHHHHHcCCceEcceEEEeeccccccccccccceEEEEEecCCCceEEEEEeCEEEECcCCC
Confidence            46788899998876654 45 9999999999986543      247888777778888889999999999954

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=98.87  E-value=1.3e-08  Score=98.51  Aligned_cols=37  Identities=32%  Similarity=0.479  Sum_probs=34.4

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPT   43 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~   43 (426)
                      +||+|||||++|+++|+.|+++|++|+|+|++..++.
T Consensus         2 ~dVvVIGaG~aGl~aA~~L~~~G~~V~vlE~~~~~GG   38 (431)
T 3k7m_X            2 YDAIVVGGGFSGLKAARDLTNAGKKVLLLEGGERLGG   38 (431)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBT
T ss_pred             CCEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCccC
Confidence            6999999999999999999999999999999887643

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=98.84  E-value=1e-08  Score=100.53  Aligned_cols=66  Identities=23%  Similarity=0.327  Sum_probs=47.2

Q ss_pred             CCCCCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCC----------Cccee--ccChhHHHHHHHHhc
Q 014324            1 MEKKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSP----------TGAGL--GLDRPAQRIIQSWLN   66 (426)
Q Consensus         1 m~~~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~----------~~~~~--~l~~~~~~~l~~~~~   66 (426)
                      |.....+||+|||||++||++|+.|+++|++|+|+|++..++....          .|..+  .-.+...++++++|+
T Consensus        11 ~~~~~~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~~~GGr~~t~~~~g~~~~~g~~~~~~~~~~~~~~~~~~gl   88 (478)
T 2ivd_A           11 MPRTTGMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHALAGYLVEQGPNSFLDREPATRALAAALNL   88 (478)
T ss_dssp             ------CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTTCCEEEETTEEEESSCCCEETTCHHHHHHHHHTTC
T ss_pred             CCCCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceeeeeccCCeeeecChhhhhhhhHHHHHHHHHcCC
Confidence            3445678999999999999999999999999999999998764221          11111  114677889999887

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=98.84  E-value=1.8e-08  Score=92.90  Aligned_cols=38  Identities=26%  Similarity=0.314  Sum_probs=33.0

Q ss_pred             CCCCCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccC
Q 014324            1 MEKKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAG   39 (426)
Q Consensus         1 m~~~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~   39 (426)
                      |+. .+|||+||||||||+++|+.|++.|++|+||||..
T Consensus         2 Mte-~~yDvvIIG~GpAGl~aA~~l~~~g~~V~liE~~~   39 (312)
T 4gcm_A            2 MTE-IDFDIAIIGAGPAGMTAAVYASRANLKTVMIERGI   39 (312)
T ss_dssp             --C-CSEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CCC-CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Confidence            444 36999999999999999999999999999999853

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=98.80  E-value=4.9e-09  Score=102.91  Aligned_cols=37  Identities=30%  Similarity=0.462  Sum_probs=34.2

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP   41 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   41 (426)
                      .++||+||||||+|+++|+.|++.|++|+|||+.+.+
T Consensus         4 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~   40 (478)
T 1v59_A            4 KSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKL   40 (478)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCc
Confidence            4589999999999999999999999999999997664

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=98.79  E-value=4.7e-08  Score=90.08  Aligned_cols=112  Identities=15%  Similarity=0.143  Sum_probs=69.4

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEE-EcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecc
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVV-LEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQ   83 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v-~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~   83 (426)
                      ..+||+||||||+|+++|+.|+++|++|+| +|| ..++      ..+....                    ...     
T Consensus         3 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~-~~~g------G~~~~~~--------------------~~~-----   50 (315)
T 3r9u_A            3 AMLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEK-GMPG------GQITSSS--------------------EIE-----   50 (315)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHHTCSCEEEECS-SSTT------GGGGGCS--------------------CBC-----
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCCeEEEEeC-CCCC------ceeeeec--------------------eec-----
Confidence            458999999999999999999999999999 999 3321      1110000                    000     


Q ss_pred             ccccccccccccccccCCCcchhccHHHHHHHHHhcCCC-Ce-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeec
Q 014324           84 NQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPP-EI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGN  161 (426)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~-~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d  161 (426)
                        ...+.            + ..+....+...+.+.+.. ++ ++++ +++++ .+++...+.+++  ..++   ++.+|
T Consensus        51 --~~~~~------------~-~~~~~~~~~~~~~~~~~~~~v~~~~~-~v~~i-~~~~~~~~~v~~--~~~~---~~~~d  108 (315)
T 3r9u_A           51 --NYPGV------------A-QVMDGISFMAPWSEQCMRFGLKHEMV-GVEQI-LKNSDGSFTIKL--EGGK---TELAK  108 (315)
T ss_dssp             --CSTTC------------C-SCBCHHHHHHHHHHHHTTTCCEEECC-CEEEE-EECTTSCEEEEE--TTSC---EEEEE
T ss_pred             --cCCCC------------C-CCCCHHHHHHHHHHHHHHcCcEEEEE-EEEEE-ecCCCCcEEEEE--ecCC---EEEeC
Confidence              00000            0 012335555666665543 67 7777 88888 554223455321  2233   48999


Q ss_pred             EEEeccCCc
Q 014324          162 LLVAADGCL  170 (426)
Q Consensus       162 ~vI~AdG~~  170 (426)
                      .||.|+|..
T Consensus       109 ~lvlAtG~~  117 (315)
T 3r9u_A          109 AVIVCTGSA  117 (315)
T ss_dssp             EEEECCCEE
T ss_pred             EEEEeeCCC
Confidence            999999974

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.79  E-value=4.1e-09  Score=103.24  Aligned_cols=39  Identities=26%  Similarity=0.454  Sum_probs=35.5

Q ss_pred             CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324            4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP   42 (426)
Q Consensus         4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~   42 (426)
                      +.++||+||||||+|+++|..|++.|++|+|||+.+.++
T Consensus         4 ~~~~dvvIIGaG~aGl~aA~~l~~~g~~V~liE~~~~~G   42 (470)
T 1dxl_A            4 SDENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALG   42 (470)
T ss_dssp             CCCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSC
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcc
Confidence            356899999999999999999999999999999987653

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=98.76  E-value=7.5e-09  Score=101.89  Aligned_cols=38  Identities=24%  Similarity=0.330  Sum_probs=33.4

Q ss_pred             CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324            4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP   41 (426)
Q Consensus         4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   41 (426)
                      |.++||+||||||+|+++|+.|+++|++|+||||...+
T Consensus        23 m~~~dVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~   60 (491)
T 3urh_A           23 MMAYDLIVIGSGPGGYVCAIKAAQLGMKVAVVEKRSTY   60 (491)
T ss_dssp             ---CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred             cccCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            45689999999999999999999999999999998764

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=98.76  E-value=5.1e-09  Score=102.82  Aligned_cols=36  Identities=28%  Similarity=0.396  Sum_probs=33.8

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP   41 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   41 (426)
                      ++||+||||||+|+++|+.|++.|++|+|||+.+.+
T Consensus         6 ~~dVvIIGaG~aGl~aA~~l~~~G~~V~liE~~~~~   41 (482)
T 1ojt_A            6 EYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTL   41 (482)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCS
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence            589999999999999999999999999999997664

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=98.76  E-value=9.2e-09  Score=101.84  Aligned_cols=37  Identities=24%  Similarity=0.356  Sum_probs=33.9

Q ss_pred             CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      +.++||+||||||+|+++|+.|++.|++|+|||+.+.
T Consensus        30 ~~~~DVvVIGgGpaGl~aA~~la~~G~~V~liEk~~~   66 (519)
T 3qfa_A           30 SYDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTP   66 (519)
T ss_dssp             SCSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCC
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCc
Confidence            3568999999999999999999999999999999753

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=98.74  E-value=3.2e-08  Score=97.20  Aligned_cols=34  Identities=18%  Similarity=0.181  Sum_probs=32.2

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEccc
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKA   38 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~   38 (426)
                      .++||+||||||+|+++|+.|+++|++|+||||.
T Consensus        25 ~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~   58 (484)
T 3o0h_A           25 FDFDLFVIGSGSGGVRAARLAGALGKRVAIAEEY   58 (484)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCcCEEEEEeCC
Confidence            4689999999999999999999999999999993

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=98.72  E-value=2.4e-08  Score=97.87  Aligned_cols=38  Identities=21%  Similarity=0.329  Sum_probs=35.1

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP   42 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~   42 (426)
                      .++||+||||||+|+++|+.|++.|++|+|||+.+.++
T Consensus         2 ~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~g   39 (476)
T 3lad_A            2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKE   39 (476)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTT
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCEEEEEeCCCccC
Confidence            46999999999999999999999999999999998654

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=98.72  E-value=5.1e-08  Score=95.23  Aligned_cols=37  Identities=27%  Similarity=0.384  Sum_probs=34.3

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP   42 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~   42 (426)
                      ++||+||||||+|+++|..|++.|++|+||||+..++
T Consensus         4 ~~DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~~G   40 (466)
T 3l8k_A            4 KYDVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGELG   40 (466)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECTTSSSS
T ss_pred             cceEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCC
Confidence            5899999999999999999999999999999887643

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=98.70  E-value=5.1e-08  Score=95.40  Aligned_cols=37  Identities=19%  Similarity=0.248  Sum_probs=31.1

Q ss_pred             CccEEEEcCChHHHHHHHHHHHc--CCcEEEEcccCCCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRA--GWDVVVLEKAGGPP   42 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~--G~~v~v~E~~~~~~   42 (426)
                      ++||+|||||++|+++|..|+++  |.+|+|||+.+.+.
T Consensus         3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~~   41 (472)
T 3iwa_A            3 LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRIS   41 (472)
T ss_dssp             -CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC----
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCccc
Confidence            46999999999999999999999  89999999998753

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=98.65  E-value=4.1e-09  Score=99.03  Aligned_cols=35  Identities=23%  Similarity=0.358  Sum_probs=32.4

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcC------CcEEEEcccCCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAG------WDVVVLEKAGGP   41 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G------~~v~v~E~~~~~   41 (426)
                      +||+|||||++|+++|+.|+++|      .+|+|+|+....
T Consensus         1 mdVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~~~   41 (351)
T 3g3e_A            1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFTP   41 (351)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSCGG
T ss_pred             CcEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCCCC
Confidence            48999999999999999999998      999999998743

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=98.65  E-value=1.9e-08  Score=98.59  Aligned_cols=37  Identities=19%  Similarity=0.296  Sum_probs=34.3

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP   41 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   41 (426)
                      .++||+||||||+|+++|..|++.|++|+|||+.+.+
T Consensus         5 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~~   41 (474)
T 1zmd_A            5 IDADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETL   41 (474)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence            4589999999999999999999999999999998764

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=98.62  E-value=2e-08  Score=93.36  Aligned_cols=39  Identities=23%  Similarity=0.426  Sum_probs=34.9

Q ss_pred             CCccEEEEcCChHHHHHHHHHHH--cCCcEEEEcccCCCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLR--AGWDVVVLEKAGGPPT   43 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~--~G~~v~v~E~~~~~~~   43 (426)
                      ..+||+|||||||||++|+.|++  .|++|+||||.+.++.
T Consensus        64 ~~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~GG  104 (326)
T 3fpz_A           64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGG  104 (326)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCT
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCCCc
Confidence            45799999999999999999985  4999999999988764

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=98.62  E-value=1.1e-06  Score=88.64  Aligned_cols=38  Identities=29%  Similarity=0.373  Sum_probs=34.8

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP   42 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~   42 (426)
                      ..+||+|||||++|+++|+.|+++|++|+|+|+....+
T Consensus        45 ~~~dvvIIG~G~aGl~aA~~l~~~G~~V~liE~~~~~g   82 (623)
T 3pl8_A           45 IKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDS   82 (623)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCS
T ss_pred             ccCCEEEECCcHHHHHHHHHHHhCCCcEEEEeccCCCC
Confidence            35899999999999999999999999999999988764

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=98.61  E-value=3.7e-08  Score=96.31  Aligned_cols=36  Identities=22%  Similarity=0.352  Sum_probs=33.8

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP   41 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   41 (426)
                      ++||+||||||+|+++|+.|++.|++|+|||+.+.+
T Consensus         2 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~~   37 (468)
T 2qae_A            2 PYDVVVIGGGPGGYVASIKAAQLGMKTACVEKRGAL   37 (468)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCc
Confidence            489999999999999999999999999999998764

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=98.60  E-value=6.3e-08  Score=93.11  Aligned_cols=38  Identities=32%  Similarity=0.500  Sum_probs=34.6

Q ss_pred             CCCccEEEEcCChHHHHHHHHHHHcCCc--EEEEcccCCC
Q 014324            4 KEKGKAVIVGGSIAGISCAHALLRAGWD--VVVLEKAGGP   41 (426)
Q Consensus         4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~--v~v~E~~~~~   41 (426)
                      +.++||+|||||++|+++|..|+++|++  |+|+|+.+.+
T Consensus         7 ~~~~~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~   46 (415)
T 3lxd_A            7 AERADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEI   46 (415)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHHTTCCSCEEEEESSSSC
T ss_pred             CCCCcEEEECChHHHHHHHHHHHccCcCCCEEEEecCCCC
Confidence            3468999999999999999999999987  9999999864

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=98.60  E-value=7.4e-08  Score=94.67  Aligned_cols=36  Identities=22%  Similarity=0.462  Sum_probs=33.1

Q ss_pred             CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccC
Q 014324            4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAG   39 (426)
Q Consensus         4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~   39 (426)
                      ..++||+||||||+|+++|+.|++.|++|+|+||..
T Consensus         4 ~~~~DvvVIG~G~aGl~aA~~la~~G~~V~liEk~~   39 (488)
T 3dgz_A            4 QQSFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVE   39 (488)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEEecc
Confidence            356899999999999999999999999999999854

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=98.59  E-value=2.4e-07  Score=88.88  Aligned_cols=34  Identities=29%  Similarity=0.433  Sum_probs=32.0

Q ss_pred             ccEEEEcCChHHHHHHHHHHH---cCCcEEEEcccCC
Q 014324            7 GKAVIVGGSIAGISCAHALLR---AGWDVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~---~G~~v~v~E~~~~   40 (426)
                      .+|+|||||++|+++|..|++   .|++|+|||+++.
T Consensus         2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~   38 (409)
T 3h8l_A            2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRF   38 (409)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSE
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCC
Confidence            379999999999999999999   8999999999985

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=98.58  E-value=2.2e-07  Score=93.50  Aligned_cols=115  Identities=19%  Similarity=0.209  Sum_probs=71.2

Q ss_pred             CCCccEEEEcCChHHHHHHHHHHHc--CCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceee
Q 014324            4 KEKGKAVIVGGSIAGISCAHALLRA--GWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTI   81 (426)
Q Consensus         4 ~~~~~V~IvGaG~aGl~~A~~L~~~--G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~   81 (426)
                      |..+||+|||||+||+++|..|++.  |.+|+|||+.+....   ..+++       .  ..++.          ...  
T Consensus        34 ~~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~~~---~~~~l-------p--~~~~g----------~~~--   89 (588)
T 3ics_A           34 WGSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYISF---ANCGL-------P--YYIGG----------VIT--   89 (588)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCSSB---CGGGH-------H--HHHTT----------SSC--
T ss_pred             ccCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCccc---cCCCC-------c--hhhcC----------cCC--
Confidence            3457999999999999999999998  899999999987531   01111       0  00000          000  


Q ss_pred             ccccccccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEee
Q 014324           82 DQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKG  160 (426)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~  160 (426)
                           ...    ....            ..++... +.  .++ ++++++|+++.  .+...+.+.  +..+|+..++++
T Consensus        90 -----~~~----~~~~------------~~~~~~~-~~--~gi~v~~~~~V~~id--~~~~~v~v~--~~~~g~~~~~~~  141 (588)
T 3ics_A           90 -----ERQ----KLLV------------QTVERMS-KR--FNLDIRVLSEVVKIN--KEEKTITIK--NVTTNETYNEAY  141 (588)
T ss_dssp             -----CGG----GGBS------------SCHHHHH-HH--TTCEEECSEEEEEEE--TTTTEEEEE--ETTTCCEEEEEC
T ss_pred             -----ChH----Hhhc------------cCHHHHH-Hh--cCcEEEECCEEEEEE--CCCCEEEEe--ecCCCCEEEEeC
Confidence                 000    0000            0111111 11  356 88999999987  344456543  245677666899


Q ss_pred             cEEEeccCCc
Q 014324          161 NLLVAADGCL  170 (426)
Q Consensus       161 d~vI~AdG~~  170 (426)
                      |.||.|+|..
T Consensus       142 d~lviAtG~~  151 (588)
T 3ics_A          142 DVLILSPGAK  151 (588)
T ss_dssp             SEEEECCCEE
T ss_pred             CEEEECCCCC
Confidence            9999999974

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=98.57  E-value=1e-07  Score=91.99  Aligned_cols=36  Identities=31%  Similarity=0.570  Sum_probs=33.0

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCC--cEEEEcccCCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGW--DVVVLEKAGGP   41 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~--~v~v~E~~~~~   41 (426)
                      .+||+|||||++|+++|..|++.|+  +|+|+|+.+..
T Consensus         4 ~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~~   41 (431)
T 1q1r_A            4 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVI   41 (431)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSC
T ss_pred             CCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCCC
Confidence            5899999999999999999999998  79999988653

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=98.57  E-value=5.3e-08  Score=94.83  Aligned_cols=36  Identities=22%  Similarity=0.238  Sum_probs=33.6

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP   41 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   41 (426)
                      ++||+||||||+|+++|..|++.|++|+|||+.+.+
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~   36 (455)
T 2yqu_A            1 MYDLLVIGAGPGGYVAAIRAAQLGMKVGVVEKEKAL   36 (455)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred             CCCEEEECCChhHHHHHHHHHHCCCeEEEEeCCCCC
Confidence            379999999999999999999999999999998764

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=98.57  E-value=2.3e-07  Score=91.22  Aligned_cols=37  Identities=27%  Similarity=0.451  Sum_probs=33.8

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcC---CcEEEEcccCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAG---WDVVVLEKAGGP   41 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G---~~v~v~E~~~~~   41 (426)
                      .++||+||||||+|+++|..|++.|   .+|+|||+.+..
T Consensus        34 m~~dvvIIGaG~aGl~aA~~l~~~g~~~~~V~lie~~~~~   73 (490)
T 2bc0_A           34 WGSKIVVVGANHAGTACIKTMLTNYGDANEIVVFDQNSNI   73 (490)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHHGGGSEEEEECSSSCC
T ss_pred             cCCcEEEECCCHHHHHHHHHHHhcCCCCCeEEEEECCCCC
Confidence            3589999999999999999999988   999999998764

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.57  E-value=4.3e-08  Score=95.50  Aligned_cols=33  Identities=24%  Similarity=0.390  Sum_probs=31.8

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEccc
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKA   38 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~   38 (426)
                      ++||+||||||+|+++|..|++.|++|+|||+.
T Consensus         3 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~   35 (455)
T 1ebd_A            3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG   35 (455)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence            489999999999999999999999999999997

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=98.54  E-value=2.9e-07  Score=90.19  Aligned_cols=35  Identities=40%  Similarity=0.489  Sum_probs=32.6

Q ss_pred             ccEEEEcCChHHHHHHHHHHHc--CCcEEEEcccCCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRA--GWDVVVLEKAGGP   41 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~--G~~v~v~E~~~~~   41 (426)
                      +||+||||||+|+++|..|++.  |.+|+|||+.+..
T Consensus        37 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~   73 (480)
T 3cgb_A           37 MNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIY   73 (480)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCC
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCC
Confidence            6999999999999999999997  8999999998764

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=98.51  E-value=1.8e-07  Score=90.92  Aligned_cols=37  Identities=41%  Similarity=0.586  Sum_probs=33.8

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHc--CCcEEEEcccCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRA--GWDVVVLEKAGGP   41 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~--G~~v~v~E~~~~~   41 (426)
                      ..+||+|||||++|+++|..|++.  |.+|+|||+.+..
T Consensus         2 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~   40 (449)
T 3kd9_A            2 SLKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWV   40 (449)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCC
T ss_pred             CcCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCcc
Confidence            357999999999999999999998  7899999999864

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=98.51  E-value=1.1e-07  Score=93.30  Aligned_cols=35  Identities=17%  Similarity=0.355  Sum_probs=32.9

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAG   39 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~   39 (426)
                      .++||+||||||+|+++|..|++.|++|+|||+..
T Consensus        10 ~~~dVvVIGgG~aGl~aA~~l~~~g~~V~liE~~~   44 (479)
T 2hqm_A           10 KHYDYLVIGGGSGGVASARRAASYGAKTLLVEAKA   44 (479)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTSCCEEEEESSC
T ss_pred             ccCCEEEEcCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            46899999999999999999999999999999973

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=98.50  E-value=3.4e-07  Score=86.94  Aligned_cols=38  Identities=29%  Similarity=0.359  Sum_probs=34.5

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP   42 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~   42 (426)
                      ++++|+|||||+||+++|..|...+.+|+|||+.+..+
T Consensus         8 ~~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~   45 (385)
T 3klj_A            8 KSTKILILGAGPAGFSAAKAALGKCDDITMINSEKYLP   45 (385)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCC
T ss_pred             CCCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCC
Confidence            46899999999999999999987899999999998753

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=98.50  E-value=4.8e-07  Score=87.84  Aligned_cols=35  Identities=23%  Similarity=0.262  Sum_probs=32.5

Q ss_pred             ccEEEEcCChHHHHHHHHHHHc--CCcEEEEcccCCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRA--GWDVVVLEKAGGP   41 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~--G~~v~v~E~~~~~   41 (426)
                      +||+|||||++|+++|..|++.  |.+|+|||+.+..
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~   37 (447)
T 1nhp_A            1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFI   37 (447)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCcc
Confidence            4899999999999999999998  9999999998764

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=98.50  E-value=7.9e-08  Score=93.08  Aligned_cols=38  Identities=21%  Similarity=0.405  Sum_probs=34.0

Q ss_pred             CCCCCCccEEEEcCChHHHHHHHHHHH---cCCcEEEEcccCC
Q 014324            1 MEKKEKGKAVIVGGSIAGISCAHALLR---AGWDVVVLEKAGG   40 (426)
Q Consensus         1 m~~~~~~~V~IvGaG~aGl~~A~~L~~---~G~~v~v~E~~~~   40 (426)
                      |..|  .||+|||||++|+++|..|++   .|++|+|||+.+.
T Consensus         1 M~~m--~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~   41 (437)
T 3sx6_A            1 MRGS--AHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDY   41 (437)
T ss_dssp             CTTS--CEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSE
T ss_pred             CCCC--CcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCC
Confidence            4443  699999999999999999999   8999999999885

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=98.49  E-value=1.1e-07  Score=92.46  Aligned_cols=35  Identities=23%  Similarity=0.240  Sum_probs=32.7

Q ss_pred             ccEEEEcCChHHHHHHHHHHHc--CCcEEEEcccCCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRA--GWDVVVLEKAGGP   41 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~--G~~v~v~E~~~~~   41 (426)
                      +||+|||||++|+++|..|++.  |.+|+|||+.+.+
T Consensus         1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~   37 (452)
T 2cdu_A            1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNI   37 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCC
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCC
Confidence            5899999999999999999998  9999999998864

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=98.48  E-value=1e-07  Score=91.06  Aligned_cols=43  Identities=21%  Similarity=0.249  Sum_probs=36.4

Q ss_pred             CCCCC-CccEEEEcCChHHHHHHHHHHHc-CCcEEEEcccCCCCC
Q 014324            1 MEKKE-KGKAVIVGGSIAGISCAHALLRA-GWDVVVLEKAGGPPT   43 (426)
Q Consensus         1 m~~~~-~~~V~IvGaG~aGl~~A~~L~~~-G~~v~v~E~~~~~~~   43 (426)
                      |+.|. ++||+|||||++||++|+.|+++ |++|+|+|+++.++.
T Consensus         1 m~~m~~~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~GG   45 (399)
T 1v0j_A            1 MQPMTARFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIGG   45 (399)
T ss_dssp             ---CCCSCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSSSG
T ss_pred             CCcccccCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCCCC
Confidence            66554 68999999999999999999999 999999999987653

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=98.47  E-value=7.9e-07  Score=86.40  Aligned_cols=36  Identities=33%  Similarity=0.386  Sum_probs=33.6

Q ss_pred             ccEEEEcCChHHHHHHHHHHHc--CCcEEEEcccCCCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRA--GWDVVVLEKAGGPP   42 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~--G~~v~v~E~~~~~~   42 (426)
                      +||+||||||||+++|..|+++  |.+|+|||+.+.++
T Consensus         3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g   40 (452)
T 3oc4_A            3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVG   40 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCS
T ss_pred             CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCc
Confidence            5999999999999999999998  89999999998754

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=98.46  E-value=1.5e-07  Score=90.75  Aligned_cols=67  Identities=22%  Similarity=0.265  Sum_probs=49.0

Q ss_pred             CCCCCCccEEEEcCChHHHHHHHHHHHcC-CcEEEEcccCCCCCCC----------CCccee--ccChhHHHHHHHHhcC
Q 014324            1 MEKKEKGKAVIVGGSIAGISCAHALLRAG-WDVVVLEKAGGPPTGS----------PTGAGL--GLDRPAQRIIQSWLNG   67 (426)
Q Consensus         1 m~~~~~~~V~IvGaG~aGl~~A~~L~~~G-~~v~v~E~~~~~~~~~----------~~~~~~--~l~~~~~~~l~~~~~~   67 (426)
                      |+.++++||+|||||++||++|+.|+++| ++|+|+|+++.++...          ..|..+  ...+...++++++|..
T Consensus         1 M~~~~~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~~GG~~~t~~~~G~~~d~G~~~~~~~~~~~~~l~~~~g~~   80 (424)
T 2b9w_A            1 MSISKDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGGKCHSPNYHGRRYEMGAIMGVPSYDTIQEIMDRTGDK   80 (424)
T ss_dssp             -CCCTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCSSTTCCCCEETTEECCSSCCCBCTTCHHHHHHHHHHCCC
T ss_pred             CCCCCCCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCCCCCcccccCCCCcccccCceeecCCcHHHHHHHHHhCCc
Confidence            55456789999999999999999999999 8999999998875421          111111  1135566778887763

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=98.45  E-value=9e-07  Score=86.41  Aligned_cols=34  Identities=18%  Similarity=0.325  Sum_probs=32.5

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEccc
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKA   38 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~   38 (426)
                      .++||+||||||+|+++|+.|++.|++|+|||+.
T Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~   36 (467)
T 1zk7_A            3 PPVQVAVIGSGGAAMAAALKAVEQGAQVTLIERG   36 (467)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4689999999999999999999999999999997

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=98.45  E-value=5.4e-07  Score=88.54  Aligned_cols=38  Identities=18%  Similarity=0.362  Sum_probs=34.1

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHc--CCcEEEEcccCCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRA--GWDVVVLEKAGGPP   42 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~--G~~v~v~E~~~~~~   42 (426)
                      ..+||+|||||+||+++|..|+++  |.+|+|||+.+.++
T Consensus        10 ~~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~~   49 (493)
T 1m6i_A           10 SHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELP   49 (493)
T ss_dssp             SEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCC
T ss_pred             CcCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCCC
Confidence            468999999999999999999887  89999999998653

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=98.45  E-value=9.4e-08  Score=94.51  Aligned_cols=38  Identities=16%  Similarity=0.324  Sum_probs=35.3

Q ss_pred             CccEEEEcCChHHHHHHHHHHHc-CCcEEEEcccCCCCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRA-GWDVVVLEKAGGPPT   43 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~-G~~v~v~E~~~~~~~   43 (426)
                      ++||+|||||++||++|+.|+++ |++|+|+|+++.++.
T Consensus        10 ~~DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~~~~GG   48 (513)
T 4gde_A           10 SVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGG   48 (513)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHCCSCEEEEESSSSCCG
T ss_pred             CCCEEEECCcHHHHHHHHHHHhhCCCCEEEEECCCCCcC
Confidence            47999999999999999999985 999999999999875

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=98.45  E-value=5.9e-07  Score=86.05  Aligned_cols=37  Identities=24%  Similarity=0.405  Sum_probs=33.5

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCC--cEEEEcccCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGW--DVVVLEKAGGP   41 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~--~v~v~E~~~~~   41 (426)
                      .++||+||||||+|+++|..|++.|.  +|+|||+.+..
T Consensus         6 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~   44 (408)
T 2gqw_A            6 LKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAER   44 (408)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSC
T ss_pred             CCCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCCC
Confidence            45899999999999999999999998  49999998764

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=98.45  E-value=3.1e-07  Score=90.13  Aligned_cols=34  Identities=26%  Similarity=0.485  Sum_probs=32.1

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEccc
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKA   38 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~   38 (426)
                      .++||+||||||+|+++|+.|++.|++|+||||.
T Consensus         8 ~~~DvvVIGgG~aGl~aA~~la~~G~~V~liEk~   41 (483)
T 3dgh_A            8 YDYDLIVIGGGSAGLACAKEAVLNGARVACLDFV   41 (483)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCEEEEEEec
Confidence            5789999999999999999999999999999964

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=98.41  E-value=7.2e-07  Score=86.10  Aligned_cols=33  Identities=21%  Similarity=0.385  Sum_probs=30.4

Q ss_pred             cEEEEcCChHHHHHHHHHHHcC--CcEEEEcccCC
Q 014324            8 KAVIVGGSIAGISCAHALLRAG--WDVVVLEKAGG   40 (426)
Q Consensus         8 ~V~IvGaG~aGl~~A~~L~~~G--~~v~v~E~~~~   40 (426)
                      +|+|||||+||+++|..|++.+  ++|+|||+++.
T Consensus         4 ~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~   38 (430)
T 3hyw_A            4 HVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPY   38 (430)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSE
T ss_pred             cEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCC
Confidence            7999999999999999999876  79999998875

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=98.41  E-value=4.6e-07  Score=89.00  Aligned_cols=111  Identities=23%  Similarity=0.238  Sum_probs=71.2

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ   85 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   85 (426)
                      .+||+||||||+|+++|..|+++ ++|+|||+.+.++.      .+...                     ...  .    
T Consensus       108 ~~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~~~GG------~~~~~---------------------~~~--~----  153 (493)
T 1y56_A          108 VVDVAIIGGGPAGIGAALELQQY-LTVALIEERGWLGG------DMWLK---------------------GIK--Q----  153 (493)
T ss_dssp             EESCCEECCSHHHHHHHHHHTTT-CCEEEECTTSSSSC------SGGGT---------------------CSE--E----
T ss_pred             cCCEEEECccHHHHHHHHHHHhc-CCEEEEeCCCCCCC------eeecc---------------------ccc--c----
Confidence            46999999999999999999999 99999999987531      11000                     000  0    


Q ss_pred             ccccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEE
Q 014324           86 ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLV  164 (426)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI  164 (426)
                      .  +            ++.   ....+...+.+.+..++ ++.++++.++..+.  ..+.+..  ..+++..++.+|.||
T Consensus       154 ~--g------------~~~---~~~~~~~~l~~~l~~~v~~~~~~~v~~i~~~~--~~~~~~~--~~~~~~~~~~~d~lv  212 (493)
T 1y56_A          154 E--G------------FNK---DSRKVVEELVGKLNENTKIYLETSALGVFDKG--EYFLVPV--VRGDKLIEILAKRVV  212 (493)
T ss_dssp             T--T------------TTE---EHHHHHHHHHHTCCTTEEEETTEEECCCEECS--SSEEEEE--EETTEEEEEEESCEE
T ss_pred             C--C------------CCC---CHHHHHHHHHHHHhcCCEEEcCCEEEEEEcCC--cEEEEEE--ecCCeEEEEECCEEE
Confidence            0  0            000   11233344445445577 88899998887533  2343321  245554568999999


Q ss_pred             eccCCch
Q 014324          165 AADGCLS  171 (426)
Q Consensus       165 ~AdG~~S  171 (426)
                      .|+|...
T Consensus       213 lAtGa~~  219 (493)
T 1y56_A          213 LATGAID  219 (493)
T ss_dssp             ECCCEEE
T ss_pred             ECCCCCc
Confidence            9999754

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=98.41  E-value=8.8e-07  Score=88.71  Aligned_cols=36  Identities=25%  Similarity=0.373  Sum_probs=33.0

Q ss_pred             ccEEEEcCChHHHHHHHHHHHc--CCcEEEEcccCCCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRA--GWDVVVLEKAGGPP   42 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~--G~~v~v~E~~~~~~   42 (426)
                      +||+||||||||+++|..|+++  |.+|+|||+.+.+.
T Consensus         2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~   39 (565)
T 3ntd_A            2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVS   39 (565)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSS
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCcc
Confidence            4899999999999999999998  79999999998753

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=98.41  E-value=2.2e-07  Score=91.49  Aligned_cols=34  Identities=29%  Similarity=0.389  Sum_probs=32.4

Q ss_pred             CccEEEEcCChHHHHHHHHHHHc---CCcEEEEcccC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRA---GWDVVVLEKAG   39 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~---G~~v~v~E~~~   39 (426)
                      ++||+||||||+|+++|..|++.   |++|+|||+..
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~   38 (499)
T 1xdi_A            2 VTRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG   38 (499)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCC
Confidence            37999999999999999999999   99999999987

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=98.40  E-value=1.4e-07  Score=93.46  Aligned_cols=41  Identities=34%  Similarity=0.490  Sum_probs=37.1

Q ss_pred             CCCCccEEEEcCChHHHHHHHHHHHcC-CcEEEEcccCCCCC
Q 014324            3 KKEKGKAVIVGGSIAGISCAHALLRAG-WDVVVLEKAGGPPT   43 (426)
Q Consensus         3 ~~~~~~V~IvGaG~aGl~~A~~L~~~G-~~v~v~E~~~~~~~   43 (426)
                      .|..+||+|||||++||++|..|+++| ++|+|+|++..++.
T Consensus         5 ~~~~~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~riGG   46 (516)
T 1rsg_A            5 SPAKKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGG   46 (516)
T ss_dssp             -CEEEEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSSSBT
T ss_pred             CCCCCcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCCCCC
Confidence            345689999999999999999999999 99999999998865

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=98.40  E-value=2.4e-07  Score=90.06  Aligned_cols=39  Identities=15%  Similarity=0.144  Sum_probs=36.5

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPT   43 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~   43 (426)
                      ..+||+|||||++||++|+.|+++|++|+|+|+++.++.
T Consensus        10 ~~~dvvVIGaG~~GL~aA~~La~~G~~V~vlE~~~~~GG   48 (453)
T 2bcg_G           10 TDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGG   48 (453)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCG
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCc
Confidence            458999999999999999999999999999999998865

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=98.38  E-value=1.2e-06  Score=84.65  Aligned_cols=35  Identities=31%  Similarity=0.547  Sum_probs=31.3

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcC--CcEEEEcccCCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAG--WDVVVLEKAGGP   41 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G--~~v~v~E~~~~~   41 (426)
                      .+|+||||||||+++|..|++.|  .+|+|||+.+..
T Consensus         1 PKVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~   37 (437)
T 4eqs_A            1 PKIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDM   37 (437)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCC
Confidence            37999999999999999999998  579999998764

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=98.36  E-value=1e-06  Score=85.91  Aligned_cols=102  Identities=17%  Similarity=0.166  Sum_probs=71.8

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccccc
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQA   86 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   86 (426)
                      .+|+|||||++|+-+|..|++.|.+|+|+|+.+.+..     .   ..+.                              
T Consensus       170 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-----~---~~~~------------------------------  211 (464)
T 2eq6_A          170 KRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILP-----Q---GDPE------------------------------  211 (464)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST-----T---SCHH------------------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCcccc-----c---cCHH------------------------------
Confidence            5899999999999999999999999999999876421     0   0000                              


Q ss_pred             cccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccC--CceEEEeecEE
Q 014324           87 TDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQT--DEVIEIKGNLL  163 (426)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~--g~~~~~~~d~v  163 (426)
                               .            ...+.+.|.+   .|+ +++++++.+++.++  ..+.+++.  .+  |+..++.+|.|
T Consensus       212 ---------~------------~~~l~~~l~~---~gV~i~~~~~v~~i~~~~--~~~~v~~~--~~~~g~~~~i~~D~v  263 (464)
T 2eq6_A          212 ---------T------------AALLRRALEK---EGIRVRTKTKAVGYEKKK--DGLHVRLE--PAEGGEGEEVVVDKV  263 (464)
T ss_dssp             ---------H------------HHHHHHHHHH---TTCEEECSEEEEEEEEET--TEEEEEEE--ETTCCSCEEEEESEE
T ss_pred             ---------H------------HHHHHHHHHh---cCCEEEcCCEEEEEEEeC--CEEEEEEe--ecCCCceeEEEcCEE
Confidence                     0            0122233322   478 99999999998543  34555532  15  76446899999


Q ss_pred             EeccCCchhhh
Q 014324          164 VAADGCLSSIR  174 (426)
Q Consensus       164 I~AdG~~S~vR  174 (426)
                      |.|+|..+.+.
T Consensus       264 v~a~G~~p~~~  274 (464)
T 2eq6_A          264 LVAVGRKPRTE  274 (464)
T ss_dssp             EECSCEEESCT
T ss_pred             EECCCcccCCC
Confidence            99999887654

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=98.36  E-value=2.1e-06  Score=82.27  Aligned_cols=36  Identities=22%  Similarity=0.512  Sum_probs=33.0

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCc--EEEEcccCCCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWD--VVVLEKAGGPP   42 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~--v~v~E~~~~~~   42 (426)
                      .+|+|||||+||+++|..|+++|++  |+|||+.+.++
T Consensus         3 ~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~~   40 (410)
T 3ef6_A            3 THVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLP   40 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSSS
T ss_pred             CCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCCC
Confidence            4899999999999999999999987  99999988753

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=98.35  E-value=2.3e-07  Score=90.21  Aligned_cols=65  Identities=25%  Similarity=0.268  Sum_probs=48.1

Q ss_pred             CCCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCC----cc-----eecc---ChhHHHHHHHHhcC
Q 014324            3 KKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPT----GA-----GLGL---DRPAQRIIQSWLNG   67 (426)
Q Consensus         3 ~~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~----~~-----~~~l---~~~~~~~l~~~~~~   67 (426)
                      ++.++||+|||||++||++|+.|+++|++|+|+|++..++.....    |.     +..+   .+...++++++|+.
T Consensus         2 ~~~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~g~~   78 (453)
T 2yg5_A            2 PTLQRDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDTIDGAVLEIGGQWVSPDQTALISLLDELGLK   78 (453)
T ss_dssp             CEEEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTCCEEEETTEEEECSCCCBCTTCHHHHHHHHHTTCC
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCCCCceeccccCCceeccCCeEecCccHHHHHHHHHcCCc
Confidence            345689999999999999999999999999999999887642210    11     0112   34566778888763

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=98.34  E-value=4.9e-06  Score=79.54  Aligned_cols=35  Identities=20%  Similarity=0.344  Sum_probs=32.8

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCC--cEEEEcccCCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGW--DVVVLEKAGGP   41 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~--~v~v~E~~~~~   41 (426)
                      .+|+|||||++|+++|..|+++|+  +|+|||+.+..
T Consensus         2 k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~   38 (404)
T 3fg2_P            2 DTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHL   38 (404)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSSS
T ss_pred             CCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCCCC
Confidence            589999999999999999999998  89999999864

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=98.31  E-value=4.7e-07  Score=88.73  Aligned_cols=42  Identities=26%  Similarity=0.299  Sum_probs=36.1

Q ss_pred             CCCCCCccEEEEcCChHHHHHHHHHHHcC-CcEEEEcccCCCC
Q 014324            1 MEKKEKGKAVIVGGSIAGISCAHALLRAG-WDVVVLEKAGGPP   42 (426)
Q Consensus         1 m~~~~~~~V~IvGaG~aGl~~A~~L~~~G-~~v~v~E~~~~~~   42 (426)
                      ||.+..+||+|||||++||++|+.|+++| .+|+|+|+.+.++
T Consensus         4 m~~~~~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~~~G   46 (484)
T 4dsg_A            4 MAELLTPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPG   46 (484)
T ss_dssp             ---CCSCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSSSSS
T ss_pred             CCcccCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCCCCC
Confidence            45556789999999999999999999999 7999999998765

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=98.31  E-value=1.8e-06  Score=81.99  Aligned_cols=100  Identities=21%  Similarity=0.276  Sum_probs=72.0

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ   85 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   85 (426)
                      ..+|+|||||++|+.+|..|++.|.+|+|+|+.+.+..     . . +.                               
T Consensus       145 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~-----~-~-~~-------------------------------  186 (384)
T 2v3a_A          145 KRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMP-----G-L-LH-------------------------------  186 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST-----T-T-SC-------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCcchhh-----c-c-cC-------------------------------
Confidence            46899999999999999999999999999999876421     0 0 00                               


Q ss_pred             ccccccccccccccCCCcchhccHHHHHHHHHhcC-CCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEE
Q 014324           86 ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNAL-PPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLL  163 (426)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~-~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~v  163 (426)
                                              ..+.+.+.+.+ +.|+ ++.++++.+++.++  ..+.++   +.+|++  +++|.|
T Consensus       187 ------------------------~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~--~~~~v~---~~~g~~--i~~d~v  235 (384)
T 2v3a_A          187 ------------------------PAAAKAVQAGLEGLGVRFHLGPVLASLKKAG--EGLEAH---LSDGEV--IPCDLV  235 (384)
T ss_dssp             ------------------------HHHHHHHHHHHHTTTCEEEESCCEEEEEEET--TEEEEE---ETTSCE--EEESEE
T ss_pred             ------------------------HHHHHHHHHHHHHcCCEEEeCCEEEEEEecC--CEEEEE---ECCCCE--EECCEE
Confidence                                    11122233322 2478 99999999998543  345555   567764  899999


Q ss_pred             EeccCCchhhh
Q 014324          164 VAADGCLSSIR  174 (426)
Q Consensus       164 I~AdG~~S~vR  174 (426)
                      |.|+|..+...
T Consensus       236 v~a~G~~p~~~  246 (384)
T 2v3a_A          236 VSAVGLRPRTE  246 (384)
T ss_dssp             EECSCEEECCH
T ss_pred             EECcCCCcCHH
Confidence            99999887653

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=98.31  E-value=3.6e-06  Score=82.35  Aligned_cols=107  Identities=20%  Similarity=0.233  Sum_probs=73.8

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ   85 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   85 (426)
                      ..+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+..      .  +.+..                            
T Consensus       183 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~------~--~~~~~----------------------------  226 (478)
T 1v59_A          183 PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGA------S--MDGEV----------------------------  226 (478)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSS------S--SCHHH----------------------------
T ss_pred             CceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcccc------c--cCHHH----------------------------
Confidence            35899999999999999999999999999999886421      0  10000                            


Q ss_pred             ccccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEE
Q 014324           86 ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLV  164 (426)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI  164 (426)
                                             ...+.+.|.   +.|+ +++++++.+++..+++..+.+++.+..+|+..++.+|.||
T Consensus       227 -----------------------~~~l~~~l~---~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~~~~~D~vv  280 (478)
T 1v59_A          227 -----------------------AKATQKFLK---KQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLL  280 (478)
T ss_dssp             -----------------------HHHHHHHHH---HTTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEE
T ss_pred             -----------------------HHHHHHHHH---HCCCEEEeCCEEEEEEEecCCCeEEEEEEEcCCCCceEEECCEEE
Confidence                                   012222232   2477 9999999999852234455665433334544568999999


Q ss_pred             eccCCchhhh
Q 014324          165 AADGCLSSIR  174 (426)
Q Consensus       165 ~AdG~~S~vR  174 (426)
                      .|.|..+.+.
T Consensus       281 ~a~G~~p~~~  290 (478)
T 1v59_A          281 VAVGRRPYIA  290 (478)
T ss_dssp             ECSCEEECCT
T ss_pred             ECCCCCcCCC
Confidence            9999877654

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=98.30  E-value=5e-07  Score=84.83  Aligned_cols=38  Identities=37%  Similarity=0.537  Sum_probs=34.9

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEccc-CCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKA-GGPP   42 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~-~~~~   42 (426)
                      ..+||+|||||++||++|+.|+++|++|+|||++ ..++
T Consensus        43 ~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~vG   81 (376)
T 2e1m_A           43 PPKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRVG   81 (376)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSCCB
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCcEEEEeccccccC
Confidence            4679999999999999999999999999999999 7654

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=98.28  E-value=7.9e-07  Score=87.86  Aligned_cols=36  Identities=19%  Similarity=0.330  Sum_probs=33.3

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP   41 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   41 (426)
                      .|||+||||||+|+++|..+++.|.+|+|+|+....
T Consensus        42 dYDviVIG~GpaG~~aA~~aa~~G~kValIE~~~~~   77 (542)
T 4b1b_A           42 DYDYVVIGGGPGGMASAKEAAAHGARVLLFDYVKPS   77 (542)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHTTTCCEEEECCCCCC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccc
Confidence            389999999999999999999999999999987653

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=98.27  E-value=4.5e-07  Score=88.44  Aligned_cols=39  Identities=18%  Similarity=0.275  Sum_probs=34.3

Q ss_pred             CCCCCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccC
Q 014324            1 MEKKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAG   39 (426)
Q Consensus         1 m~~~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~   39 (426)
                      |+.|.++||+||||||+|+++|..|++.|++|+|||+.+
T Consensus         1 m~~m~~~dvvIIG~G~aG~~aA~~l~~~g~~V~lie~~~   39 (464)
T 2eq6_A            1 MTPMKTYDLIVIGTGPGGYHAAIRAAQLGLKVLAVEAGE   39 (464)
T ss_dssp             ---CEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CCCcccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            666667999999999999999999999999999999986

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=98.26  E-value=2.9e-06  Score=85.49  Aligned_cols=34  Identities=18%  Similarity=0.360  Sum_probs=32.0

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEccc
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKA   38 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~   38 (426)
                      ..+||+||||||||+++|..|++.|++|+|||+.
T Consensus       106 ~~~dvvVIG~GpAGl~aA~~l~~~g~~v~liE~~  139 (598)
T 2x8g_A          106 YDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYV  139 (598)
T ss_dssp             SSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCC
T ss_pred             ccccEEEECCCccHHHHHHHHHhCCCeEEEEecc
Confidence            4689999999999999999999999999999984

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=98.26  E-value=2.2e-06  Score=83.41  Aligned_cols=99  Identities=18%  Similarity=0.256  Sum_probs=70.5

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ   85 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   85 (426)
                      ..+|+|||||++|+.+|..|++.|.+|+|+|+.+.+..     .   ..+..                            
T Consensus       167 ~~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~~l~-----~---~~~~~----------------------------  210 (455)
T 2yqu_A          167 PKRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRILP-----T---MDLEV----------------------------  210 (455)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT-----T---SCHHH----------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCcccc-----c---cCHHH----------------------------
Confidence            35899999999999999999999999999999876421     0   00000                            


Q ss_pred             ccccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEE
Q 014324           86 ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLV  164 (426)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI  164 (426)
                                             ...+.+.|.+   .|+ ++.++++.+++.++  ..+.++   +.+|+.  +++|.||
T Consensus       211 -----------------------~~~l~~~l~~---~Gv~i~~~~~V~~i~~~~--~~v~v~---~~~g~~--i~~D~vv  257 (455)
T 2yqu_A          211 -----------------------SRAAERVFKK---QGLTIRTGVRVTAVVPEA--KGARVE---LEGGEV--LEADRVL  257 (455)
T ss_dssp             -----------------------HHHHHHHHHH---HTCEEECSCCEEEEEEET--TEEEEE---ETTSCE--EEESEEE
T ss_pred             -----------------------HHHHHHHHHH---CCCEEEECCEEEEEEEeC--CEEEEE---ECCCeE--EEcCEEE
Confidence                                   0112222322   377 99999999998543  345555   456654  8999999


Q ss_pred             eccCCchhh
Q 014324          165 AADGCLSSI  173 (426)
Q Consensus       165 ~AdG~~S~v  173 (426)
                      .|+|..+.+
T Consensus       258 ~A~G~~p~~  266 (455)
T 2yqu_A          258 VAVGRRPYT  266 (455)
T ss_dssp             ECSCEEECC
T ss_pred             ECcCCCcCC
Confidence            999998765

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=98.25  E-value=8.4e-07  Score=87.17  Aligned_cols=39  Identities=36%  Similarity=0.570  Sum_probs=36.3

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPT   43 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~   43 (426)
                      .++||+|||||++||++|+.|+++|++|+|||+.+.++.
T Consensus        10 ~~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GG   48 (489)
T 2jae_A           10 GSHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPGG   48 (489)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCCC
Confidence            468999999999999999999999999999999988764

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=98.24  E-value=8.9e-07  Score=83.84  Aligned_cols=39  Identities=23%  Similarity=0.273  Sum_probs=35.6

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPT   43 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~   43 (426)
                      ..+||+|||||++||++|+.|+++|++|+|+|+++.++.
T Consensus        28 ~~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG   66 (397)
T 3hdq_A           28 KGFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIGG   66 (397)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSG
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCceEEEeccCCCCC
Confidence            458999999999999999999999999999999987653

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=98.23  E-value=1.2e-06  Score=86.46  Aligned_cols=61  Identities=21%  Similarity=0.290  Sum_probs=47.7

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCC----------Cccee--ccChhHHHHHHHHhc
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSP----------TGAGL--GLDRPAQRIIQSWLN   66 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~----------~~~~~--~l~~~~~~~l~~~~~   66 (426)
                      .+||+|||||++||++|+.|+++|++|+|+|+++.++....          .|..+  ...+...++++++|+
T Consensus        13 ~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~lgl   85 (504)
T 1sez_A           13 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQDGLIWDEGANTMTESEGDVTFLIDSLGL   85 (504)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCCEEEETTEEEESSCCCBCCCSHHHHHHHHHTTC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccCCeEEecCCcccccCcHHHHHHHHHcCC
Confidence            47999999999999999999999999999999998764210          11111  123667889999887

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=98.22  E-value=7.9e-07  Score=88.09  Aligned_cols=63  Identities=27%  Similarity=0.342  Sum_probs=46.7

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCC-----------Cccee--ccChhHHHHHHHHhcC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSP-----------TGAGL--GLDRPAQRIIQSWLNG   67 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~-----------~~~~~--~l~~~~~~~l~~~~~~   67 (426)
                      .++||+|||||++||++|..|+++|++|+|+|+++.++....           .|..+  ...+...++++++|+.
T Consensus         3 ~~~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GGr~~t~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~   78 (520)
T 1s3e_A            3 NKCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQNRILRLAKELGLE   78 (520)
T ss_dssp             CBCSEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTCCEECCTTTSCEESSCCEECTTCHHHHHHHHHTTCC
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCceeecccCCCcccccCceEecCCcHHHHHHHHHcCCc
Confidence            357999999999999999999999999999999988754210           11111  1134566778888763

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=98.22  E-value=8.3e-07  Score=86.54  Aligned_cols=33  Identities=18%  Similarity=0.301  Sum_probs=31.8

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcc
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEK   37 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~   37 (426)
                      .++||+||||||+|+++|+.|+++|++|+||||
T Consensus         4 ~~~DVvVIGaG~aGl~aA~~la~~G~~V~liEk   36 (463)
T 4dna_A            4 FDYDLFVIGGGSGGVRSGRLAAALGKKVAIAEE   36 (463)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHTTTCCEEEEES
T ss_pred             CCCcEEEECcCHHHHHHHHHHHhCCCEEEEEeC
Confidence            468999999999999999999999999999999

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=98.21  E-value=7.4e-07  Score=87.31  Aligned_cols=36  Identities=19%  Similarity=0.311  Sum_probs=33.2

Q ss_pred             CCCCccEEEEcCChHHHHHHHHHHHcCCcEEEEccc
Q 014324            3 KKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKA   38 (426)
Q Consensus         3 ~~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~   38 (426)
                      .+.++||+||||||+|+++|+.|++.|++|+|||+.
T Consensus        17 ~~~~~dVvIIGgG~aGl~aA~~la~~G~~V~liE~~   52 (478)
T 3dk9_A           17 AVASYDYLVIGGGSGGLASARRAAELGARAAVVESH   52 (478)
T ss_dssp             CEEECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             cCCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence            345689999999999999999999999999999976

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=98.20  E-value=4.6e-06  Score=79.62  Aligned_cols=34  Identities=29%  Similarity=0.442  Sum_probs=30.5

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcC--CcEEEEcccCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAG--WDVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G--~~v~v~E~~~~   40 (426)
                      .+|+|||||+||+++|..|++.|  .+|+|||+++.
T Consensus         3 KkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~   38 (401)
T 3vrd_B            3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNET   38 (401)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSS
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCC
Confidence            57999999999999999999876  58999998765

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=98.20  E-value=1e-06  Score=83.66  Aligned_cols=38  Identities=21%  Similarity=0.360  Sum_probs=35.1

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP   42 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~   42 (426)
                      +++||+|||||++|+++|..|+++|++|+|+|+++.++
T Consensus         2 ~~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~G   39 (384)
T 2bi7_A            2 KSKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIG   39 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCcC
Confidence            34799999999999999999999999999999998765

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.17  E-value=4.3e-06  Score=78.77  Aligned_cols=34  Identities=35%  Similarity=0.489  Sum_probs=31.9

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP   41 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   41 (426)
                      .||+||||||||+++|..|++.| +|+|+|+.+..
T Consensus         9 ~~vvIIGgG~AGl~aA~~l~~~g-~V~lie~~~~~   42 (367)
T 1xhc_A            9 SKVVIVGNGPGGFELAKQLSQTY-EVTVIDKEPVP   42 (367)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTS-EEEEECSSSSC
T ss_pred             CcEEEECCcHHHHHHHHHHhhcC-CEEEEECCCCC
Confidence            59999999999999999999999 99999998764

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=98.15  E-value=1.2e-06  Score=85.84  Aligned_cols=37  Identities=30%  Similarity=0.457  Sum_probs=34.7

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCC--cEEEEcccCCCCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGW--DVVVLEKAGGPPT   43 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~--~v~v~E~~~~~~~   43 (426)
                      +||+|||||++||++|+.|+++|.  +|+|||+++.++.
T Consensus         3 ~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~~~GG   41 (477)
T 3nks_A            3 RTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLGG   41 (477)
T ss_dssp             CEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSSSSBT
T ss_pred             ceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCCCCCC
Confidence            599999999999999999999999  9999999988754

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=98.14  E-value=1.9e-05  Score=76.88  Aligned_cols=145  Identities=9%  Similarity=-0.022  Sum_probs=81.3

Q ss_pred             CccEEEEcCChHHHHHHHHHHHc--CCcEEEEcccCCCCCCCCCcc-eeccChhHHHHHHHHhcCCchhhhccCcceeec
Q 014324            6 KGKAVIVGGSIAGISCAHALLRA--GWDVVVLEKAGGPPTGSPTGA-GLGLDRPAQRIIQSWLNGRPHLLHLATVPLTID   82 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~--G~~v~v~E~~~~~~~~~~~~~-~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~   82 (426)
                      ..+|+|||||.+|+-+|..|++.  |.+|+++++...+........ .....|...+.+..+..    ........    
T Consensus       227 ~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~~~p~~~~~~~~~~~~p~~~~~~~~l~~----~~~~~~~~----  298 (463)
T 3s5w_A          227 PMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASALKPADDSPFVNEVFAPKFTDLIYSREH----AERERLLR----  298 (463)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSSCCBCCCCHHHHGGGSHHHHHHHHHSCH----HHHHHHHH----
T ss_pred             CCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCCCcCccCCccchhccChhHHHHHhcCCH----HHHHHHHH----
Confidence            46899999999999999999999  899999999987532110000 01122332222222211    00000000    


Q ss_pred             ccccccccccccccc-ccCCCcchhccHHHHHHHHHhcC--CCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEE
Q 014324           83 QNQATDNAKVTRTLA-RDDNFNFRAAHWADLHGLLYNAL--PPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEI  158 (426)
Q Consensus        83 ~~~~~~~~~~~~~~~-~~~~~~~~~~~r~~l~~~L~~~~--~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~  158 (426)
                                 .... .........+. ...+.+..+.+  ..++ ++.+++|++++.++  ..+.+++++..+|+..++
T Consensus       299 -----------~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~v~i~~~~~v~~v~~~~--~~~~v~~~~~~~g~~~~~  364 (463)
T 3s5w_A          299 -----------EYHNTNYSVVDTDLIE-RIYGVFYRQKVSGIPRHAFRCMTTVERATATA--QGIELALRDAGSGELSVE  364 (463)
T ss_dssp             -----------HTGGGTSSCBCHHHHH-HHHHHHHHHHHHCCCCSEEETTEEEEEEEEET--TEEEEEEEETTTCCEEEE
T ss_pred             -----------HhhccCCCcCCHHHHH-HHHHHHHHHHhcCCCCeEEEeCCEEEEEEecC--CEEEEEEEEcCCCCeEEE
Confidence                       0000 00000000000 11111122222  2477 99999999998643  457777665668887789


Q ss_pred             eecEEEeccCCchh
Q 014324          159 KGNLLVAADGCLSS  172 (426)
Q Consensus       159 ~~d~vI~AdG~~S~  172 (426)
                      .+|+||.|+|....
T Consensus       365 ~~D~Vv~AtG~~p~  378 (463)
T 3s5w_A          365 TYDAVILATGYERQ  378 (463)
T ss_dssp             EESEEEECCCEECC
T ss_pred             ECCEEEEeeCCCCC
Confidence            99999999997643

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=98.13  E-value=3.7e-06  Score=82.74  Aligned_cols=39  Identities=41%  Similarity=0.553  Sum_probs=36.0

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPT   43 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~   43 (426)
                      ..+||+|||||++||++|..|+++|++|+|+|+++.++.
T Consensus        32 ~~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~gg   70 (498)
T 2iid_A           32 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGG   70 (498)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBT
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCC
Confidence            357999999999999999999999999999999988764

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=98.12  E-value=6.7e-06  Score=79.77  Aligned_cols=101  Identities=13%  Similarity=0.100  Sum_probs=71.3

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ   85 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   85 (426)
                      ..+|+|||||++|+-+|..|++.|.+|+|+|+.+.+..        .+.+..                            
T Consensus       167 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~--------~~~~~~----------------------------  210 (450)
T 1ges_A          167 PERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLP--------SFDPMI----------------------------  210 (450)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST--------TSCHHH----------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCchhh--------hhhHHH----------------------------
Confidence            35899999999999999999999999999998875321        011100                            


Q ss_pred             ccccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEE
Q 014324           86 ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLV  164 (426)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI  164 (426)
                                             ...+.+.|.+   .|+ ++.++++.+++.+++ ..+.++   +.+|+.  +++|.||
T Consensus       211 -----------------------~~~l~~~l~~---~Gv~i~~~~~v~~i~~~~~-~~~~v~---~~~g~~--i~~D~vv  258 (450)
T 1ges_A          211 -----------------------SETLVEVMNA---EGPQLHTNAIPKAVVKNTD-GSLTLE---LEDGRS--ETVDCLI  258 (450)
T ss_dssp             -----------------------HHHHHHHHHH---HSCEEECSCCEEEEEECTT-SCEEEE---ETTSCE--EEESEEE
T ss_pred             -----------------------HHHHHHHHHH---CCCEEEeCCEEEEEEEeCC-cEEEEE---ECCCcE--EEcCEEE
Confidence                                   0122233322   377 999999999985432 235555   567764  8999999


Q ss_pred             eccCCchhhh
Q 014324          165 AADGCLSSIR  174 (426)
Q Consensus       165 ~AdG~~S~vR  174 (426)
                      .|+|..+.+.
T Consensus       259 ~a~G~~p~~~  268 (450)
T 1ges_A          259 WAIGREPAND  268 (450)
T ss_dssp             ECSCEEESCT
T ss_pred             ECCCCCcCCC
Confidence            9999887654

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=98.12  E-value=1.5e-06  Score=85.51  Aligned_cols=60  Identities=20%  Similarity=0.263  Sum_probs=46.8

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCC----------Cccee--ccChhHHHHHHHHhc
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSP----------TGAGL--GLDRPAQRIIQSWLN   66 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~----------~~~~~--~l~~~~~~~l~~~~~   66 (426)
                      +||+|||||++||++|..|+++|++|+|+|+++.++....          .|..+  ...+...+.++++|+
T Consensus        40 ~~v~iiGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~l~~lgl  111 (495)
T 2vvm_A           40 WDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGRSWSSNIDGYPYEMGGTWVHWHQSHVWREITRYKM  111 (495)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSBSBTTCCEEEETTEEEECSCCCBCTTSHHHHHHHHHTTC
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCCEEEEeCCCCCCCcceecccCCeeecCCCeEecCccHHHHHHHHHcCC
Confidence            7999999999999999999999999999999998764221          11111  134677778888776

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=98.12  E-value=1.6e-06  Score=81.75  Aligned_cols=37  Identities=30%  Similarity=0.404  Sum_probs=34.5

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPT   43 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~   43 (426)
                      +||+|||||++||++|..|+++|++|+|+|+++.++.
T Consensus         2 ~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG   38 (367)
T 1i8t_A            2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGG   38 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSG
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCc
Confidence            6999999999999999999999999999999987653

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=98.11  E-value=1e-05  Score=79.49  Aligned_cols=36  Identities=17%  Similarity=0.284  Sum_probs=33.0

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ++.+|+|||||+||+++|..|++.+++|+|||+++.
T Consensus        41 ~KprVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~~   76 (502)
T 4g6h_A           41 DKPNVLILGSGWGAISFLKHIDTKKYNVSIISPRSY   76 (502)
T ss_dssp             SSCEEEEECSSHHHHHHHHHSCTTTCEEEEEESSSE
T ss_pred             CCCCEEEECCcHHHHHHHHHhhhCCCcEEEECCCCC
Confidence            456899999999999999999999999999999864

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=98.10  E-value=1.2e-06  Score=86.00  Aligned_cols=34  Identities=24%  Similarity=0.310  Sum_probs=32.3

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAG   39 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~   39 (426)
                      ++||+||||||+|+++|..|++.|++|+|+|+..
T Consensus         8 ~~DvvVIGgG~aGl~aA~~la~~G~~V~liE~~~   41 (492)
T 3ic9_A            8 NVDVAIIGTGTAGMGAYRAAKKHTDKVVLIEGGA   41 (492)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTCSCEEEEESSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence            4899999999999999999999999999999964

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.09  E-value=9.1e-06  Score=79.33  Aligned_cols=104  Identities=16%  Similarity=0.184  Sum_probs=71.8

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ   85 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   85 (426)
                      ..+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+..     .   +.+..                            
T Consensus       177 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~-----~---~~~~~----------------------------  220 (470)
T 1dxl_A          177 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVP-----T---MDAEI----------------------------  220 (470)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSST-----T---SCHHH----------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcccc-----c---ccHHH----------------------------
Confidence            35899999999999999999999999999999876421     0   00000                            


Q ss_pred             ccccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEE
Q 014324           86 ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLV  164 (426)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI  164 (426)
                                             ...+.+.|.+   .|+ ++.++++.+++.  ++..+.+++.+..+|+..++.+|.||
T Consensus       221 -----------------------~~~l~~~l~~---~gv~i~~~~~v~~i~~--~~~~~~v~~~~~~~g~~~~~~~D~vv  272 (470)
T 1dxl_A          221 -----------------------RKQFQRSLEK---QGMKFKLKTKVVGVDT--SGDGVKLTVEPSAGGEQTIIEADVVL  272 (470)
T ss_dssp             -----------------------HHHHHHHHHH---SSCCEECSEEEEEEEC--SSSSEEEEEEESSSCCCEEEEESEEE
T ss_pred             -----------------------HHHHHHHHHH---cCCEEEeCCEEEEEEE--cCCeEEEEEEecCCCcceEEECCEEE
Confidence                                   0122233322   477 999999999984  33345555432225644468999999


Q ss_pred             eccCCchhh
Q 014324          165 AADGCLSSI  173 (426)
Q Consensus       165 ~AdG~~S~v  173 (426)
                      .|.|..+.+
T Consensus       273 ~a~G~~p~~  281 (470)
T 1dxl_A          273 VSAGRTPFT  281 (470)
T ss_dssp             CCCCEEECC
T ss_pred             ECCCCCcCC
Confidence            999987654

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=98.08  E-value=1.6e-05  Score=78.11  Aligned_cols=104  Identities=21%  Similarity=0.269  Sum_probs=72.4

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ   85 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   85 (426)
                      ..+|+|||||++|+-+|..|++.|.+|+++|+.+.+..      .  +.+..                            
T Consensus       198 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~------~--~d~~~----------------------------  241 (491)
T 3urh_A          198 PASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTILG------G--MDGEV----------------------------  241 (491)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSS------S--SCHHH----------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEeccccccc------c--CCHHH----------------------------
Confidence            35799999999999999999999999999998876421      0  11000                            


Q ss_pred             ccccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEE
Q 014324           86 ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLV  164 (426)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI  164 (426)
                                             ...+.+.|.   +.|+ ++.++++.+++.+++  .+.+++.+..+|+..++.+|.||
T Consensus       242 -----------------------~~~l~~~l~---~~gV~v~~~~~v~~i~~~~~--~~~v~~~~~~~g~~~~i~~D~Vi  293 (491)
T 3urh_A          242 -----------------------AKQLQRMLT---KQGIDFKLGAKVTGAVKSGD--GAKVTFEPVKGGEATTLDAEVVL  293 (491)
T ss_dssp             -----------------------HHHHHHHHH---HTTCEEECSEEEEEEEEETT--EEEEEEEETTSCCCEEEEESEEE
T ss_pred             -----------------------HHHHHHHHH---hCCCEEEECCeEEEEEEeCC--EEEEEEEecCCCceEEEEcCEEE
Confidence                                   012222232   2477 999999999986443  55555443334655569999999


Q ss_pred             eccCCchhh
Q 014324          165 AADGCLSSI  173 (426)
Q Consensus       165 ~AdG~~S~v  173 (426)
                      .|.|.....
T Consensus       294 ~a~G~~p~~  302 (491)
T 3urh_A          294 IATGRKPST  302 (491)
T ss_dssp             ECCCCEECC
T ss_pred             EeeCCccCC
Confidence            999987554

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=98.08  E-value=2.8e-06  Score=82.36  Aligned_cols=38  Identities=21%  Similarity=0.293  Sum_probs=34.9

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP   42 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~   42 (426)
                      ..+||+|||||||||++|..|++.|++|+|||+.+.++
T Consensus       121 ~~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~~G  158 (456)
T 2vdc_G          121 LGLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMG  158 (456)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCC
Confidence            45799999999999999999999999999999998753

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=98.06  E-value=1.7e-05  Score=76.79  Aligned_cols=99  Identities=22%  Similarity=0.304  Sum_probs=68.8

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccc
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQN   84 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~   84 (426)
                      ...+|+|||||++|+.+|..|++.|.+|+|+|+.+.+..     ..  +.                              
T Consensus       148 ~~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-----~~--~~------------------------------  190 (447)
T 1nhp_A          148 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLG-----VY--LD------------------------------  190 (447)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTT-----TT--CC------------------------------
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCccccc-----cc--CC------------------------------
Confidence            457899999999999999999999999999999876421     00  00                              


Q ss_pred             cccccccccccccccCCCcchhccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecE
Q 014324           85 QATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNL  162 (426)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~  162 (426)
                                               ..+.+.+.+.++ .|+ +++++++.+++.  ++..+.++   . +|.  ++++|.
T Consensus       191 -------------------------~~~~~~l~~~l~~~gv~i~~~~~v~~i~~--~~~v~~v~---~-~~~--~i~~d~  237 (447)
T 1nhp_A          191 -------------------------KEFTDVLTEEMEANNITIATGETVERYEG--DGRVQKVV---T-DKN--AYDADL  237 (447)
T ss_dssp             -------------------------HHHHHHHHHHHHTTTEEEEESCCEEEEEC--SSBCCEEE---E-SSC--EEECSE
T ss_pred             -------------------------HHHHHHHHHHHHhCCCEEEcCCEEEEEEc--cCcEEEEE---E-CCC--EEECCE
Confidence                                     112222333332 488 999999999874  32222333   2 444  389999


Q ss_pred             EEeccCCchhh
Q 014324          163 LVAADGCLSSI  173 (426)
Q Consensus       163 vI~AdG~~S~v  173 (426)
                      ||.|+|..+.+
T Consensus       238 vi~a~G~~p~~  248 (447)
T 1nhp_A          238 VVVAVGVRPNT  248 (447)
T ss_dssp             EEECSCEEESC
T ss_pred             EEECcCCCCCh
Confidence            99999987653

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=98.04  E-value=1.7e-05  Score=77.23  Aligned_cols=100  Identities=17%  Similarity=0.055  Sum_probs=71.1

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ   85 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   85 (426)
                      ..+|+|||||++|+-+|..|++.|.+|+|+|+.+.+..      .  +.+...                           
T Consensus       166 ~~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~~l~------~--~~~~~~---------------------------  210 (463)
T 2r9z_A          166 PKRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLLF------Q--FDPLLS---------------------------  210 (463)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST------T--SCHHHH---------------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCcccc------c--cCHHHH---------------------------
Confidence            35899999999999999999999999999998876321      0  111000                           


Q ss_pred             ccccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEE
Q 014324           86 ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLV  164 (426)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI  164 (426)
                                              ..+.+.|.   +.|+ ++.++++.+++.+++  .+.++   +.+|+. ++++|.||
T Consensus       211 ------------------------~~l~~~l~---~~gv~i~~~~~v~~i~~~~~--~~~v~---~~~G~~-~i~~D~vv  257 (463)
T 2r9z_A          211 ------------------------ATLAENMH---AQGIETHLEFAVAALERDAQ--GTTLV---AQDGTR-LEGFDSVI  257 (463)
T ss_dssp             ------------------------HHHHHHHH---HTTCEEESSCCEEEEEEETT--EEEEE---ETTCCE-EEEESEEE
T ss_pred             ------------------------HHHHHHHH---HCCCEEEeCCEEEEEEEeCC--eEEEE---EeCCcE-EEEcCEEE
Confidence                                    11222232   2477 999999999985433  35555   567873 48999999


Q ss_pred             eccCCchhh
Q 014324          165 AADGCLSSI  173 (426)
Q Consensus       165 ~AdG~~S~v  173 (426)
                      .|+|..+.+
T Consensus       258 ~a~G~~p~~  266 (463)
T 2r9z_A          258 WAVGRAPNT  266 (463)
T ss_dssp             ECSCEEESC
T ss_pred             ECCCCCcCC
Confidence            999987655

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=98.03  E-value=2.8e-05  Score=76.31  Aligned_cols=102  Identities=18%  Similarity=0.135  Sum_probs=71.2

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ   85 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   85 (426)
                      ..+|+|||||++|+-+|..|++.|.+|+++|+.+.+..      .  +.+..                            
T Consensus       174 ~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~------~--~d~~~----------------------------  217 (492)
T 3ic9_A          174 PKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVAN------L--QDEEM----------------------------  217 (492)
T ss_dssp             CSEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCCTT------C--CCHHH----------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCcccc------c--CCHHH----------------------------
Confidence            35899999999999999999999999999999887421      0  00000                            


Q ss_pred             ccccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEE
Q 014324           86 ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLV  164 (426)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI  164 (426)
                                             ...+.+.|.+   . + ++.++++..++.+++  .+.+++. ..+|+..++.+|.||
T Consensus       218 -----------------------~~~l~~~l~~---~-V~i~~~~~v~~i~~~~~--~v~v~~~-~~~G~~~~i~~D~Vi  267 (492)
T 3ic9_A          218 -----------------------KRYAEKTFNE---E-FYFDAKARVISTIEKED--AVEVIYF-DKSGQKTTESFQYVL  267 (492)
T ss_dssp             -----------------------HHHHHHHHHT---T-SEEETTCEEEEEEECSS--SEEEEEE-CTTCCEEEEEESEEE
T ss_pred             -----------------------HHHHHHHHhh---C-cEEEECCEEEEEEEcCC--EEEEEEE-eCCCceEEEECCEEE
Confidence                                   0122233322   2 6 888999999985433  4555532 146765669999999


Q ss_pred             eccCCchhh
Q 014324          165 AADGCLSSI  173 (426)
Q Consensus       165 ~AdG~~S~v  173 (426)
                      .|.|....+
T Consensus       268 ~a~G~~p~~  276 (492)
T 3ic9_A          268 AATGRKANV  276 (492)
T ss_dssp             ECSCCEESC
T ss_pred             EeeCCccCC
Confidence            999987554

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=98.01  E-value=4e-06  Score=81.64  Aligned_cols=34  Identities=21%  Similarity=0.353  Sum_probs=32.5

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEccc
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKA   38 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~   38 (426)
                      .++||+||||||+|+++|..|++.|++|+|||+.
T Consensus         3 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~   36 (463)
T 2r9z_A            3 QHFDLIAIGGGSGGLAVAEKAAAFGKRVALIESK   36 (463)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             ccCcEEEECCCHHHHHHHHHHHhCCCcEEEEcCC
Confidence            4689999999999999999999999999999997

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=98.01  E-value=4.1e-06  Score=81.01  Aligned_cols=39  Identities=18%  Similarity=0.183  Sum_probs=36.1

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPT   43 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~   43 (426)
                      ..+||+|||+|++|+++|..|+++|.+|+|+||++..+.
T Consensus        19 ~~~dv~iiG~G~~g~~~a~~l~~~g~~v~~~e~~~~~Gg   57 (475)
T 3p1w_A           19 EHYDVIILGTGLKECILSGLLSHYGKKILVLDRNPYYGG   57 (475)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCG
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeccCCCCC
Confidence            458999999999999999999999999999999987764

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=98.01  E-value=5.2e-06  Score=80.06  Aligned_cols=39  Identities=10%  Similarity=0.123  Sum_probs=36.0

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPT   43 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~   43 (426)
                      ..+||+|||||++|+++|..|+++|++|+|+|++..++.
T Consensus         5 ~~~~v~iiG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg   43 (433)
T 1d5t_A            5 EEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGG   43 (433)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCT
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCccc
Confidence            458999999999999999999999999999999987764

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.00  E-value=1e-05  Score=78.67  Aligned_cols=99  Identities=18%  Similarity=0.179  Sum_probs=69.1

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ   85 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   85 (426)
                      ..+|+|||||++|+-+|..|++.|.+|+|+|+.+.+..      .  +.+..                            
T Consensus       171 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~------~--~~~~~----------------------------  214 (458)
T 1lvl_A          171 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILP------T--YDSEL----------------------------  214 (458)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSST------T--SCHHH----------------------------
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCcccc------c--cCHHH----------------------------
Confidence            35899999999999999999999999999999876421      0  10000                            


Q ss_pred             ccccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEE
Q 014324           86 ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLV  164 (426)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI  164 (426)
                                             ...+.+.|.+   .|+ ++.++++.+++  . + .+.++   ..+|+..++.+|.||
T Consensus       215 -----------------------~~~l~~~l~~---~gv~i~~~~~v~~i~--~-~-~v~v~---~~~G~~~~i~~D~vv  261 (458)
T 1lvl_A          215 -----------------------TAPVAESLKK---LGIALHLGHSVEGYE--N-G-CLLAN---DGKGGQLRLEADRVL  261 (458)
T ss_dssp             -----------------------HHHHHHHHHH---HTCEEETTCEEEEEE--T-T-EEEEE---CSSSCCCEECCSCEE
T ss_pred             -----------------------HHHHHHHHHH---CCCEEEECCEEEEEE--e-C-CEEEE---ECCCceEEEECCEEE
Confidence                                   0112222322   377 89999999987  3 2 25544   345644458999999


Q ss_pred             eccCCchhh
Q 014324          165 AADGCLSSI  173 (426)
Q Consensus       165 ~AdG~~S~v  173 (426)
                      .|.|..+.+
T Consensus       262 ~a~G~~p~~  270 (458)
T 1lvl_A          262 VAVGRRPRT  270 (458)
T ss_dssp             ECCCEEECC
T ss_pred             ECcCCCcCC
Confidence            999987654

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=98.00  E-value=2.2e-05  Score=76.66  Aligned_cols=105  Identities=17%  Similarity=0.204  Sum_probs=70.3

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccccc
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQA   86 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   86 (426)
                      .+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+..     ..  +.+..                             
T Consensus       179 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-----~~--~~~~~-----------------------------  222 (474)
T 1zmd_A          179 EKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGG-----VG--IDMEI-----------------------------  222 (474)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSC-----SS--CCHHH-----------------------------
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCccCC-----cc--cCHHH-----------------------------
Confidence            5899999999999999999999999999999876421     00  00000                             


Q ss_pred             cccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEe
Q 014324           87 TDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVA  165 (426)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~  165 (426)
                                            ...+.+.|.   +.|+ +++++++.+++.+++ ..+.+++.+..+++..++++|.||.
T Consensus       223 ----------------------~~~l~~~l~---~~Gv~i~~~~~v~~i~~~~~-~~~~v~~~~~~~~~~~~i~~D~vv~  276 (474)
T 1zmd_A          223 ----------------------SKNFQRILQ---KQGFKFKLNTKVTGATKKSD-GKIDVSIEAASGGKAEVITCDVLLV  276 (474)
T ss_dssp             ----------------------HHHHHHHHH---HTTCEEECSEEEEEEEECTT-SCEEEEEEETTSCCCEEEEESEEEE
T ss_pred             ----------------------HHHHHHHHH---HCCCEEEeCceEEEEEEcCC-ceEEEEEEecCCCCceEEEcCEEEE
Confidence                                  012222232   2478 999999999985432 2255553322233334589999999


Q ss_pred             ccCCchhh
Q 014324          166 ADGCLSSI  173 (426)
Q Consensus       166 AdG~~S~v  173 (426)
                      |.|..+.+
T Consensus       277 a~G~~p~~  284 (474)
T 1zmd_A          277 CIGRRPFT  284 (474)
T ss_dssp             CSCEEECC
T ss_pred             CcCCCcCC
Confidence            99987654

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=97.99  E-value=3.5e-06  Score=81.80  Aligned_cols=34  Identities=18%  Similarity=0.305  Sum_probs=32.4

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEccc
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKA   38 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~   38 (426)
                      .++||+||||||+|+++|..|++.|++|+|||+.
T Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~   36 (450)
T 1ges_A            3 KHYDYIAIGGGSGGIASINRAAMYGQKCALIEAK   36 (450)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCeEEEEcCC
Confidence            4689999999999999999999999999999997

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=97.99  E-value=5.8e-06  Score=76.81  Aligned_cols=35  Identities=31%  Similarity=0.427  Sum_probs=32.8

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP   41 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   41 (426)
                      +||+|||||+||+.+|+.|+++|++|+|+|+++..
T Consensus         2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~~~   36 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRPKR   36 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTTS
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCcEEEEeccCCc
Confidence            58999999999999999999999999999998743

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=97.98  E-value=2.5e-05  Score=76.38  Aligned_cols=102  Identities=14%  Similarity=0.110  Sum_probs=71.1

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ   85 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   85 (426)
                      ..+|+|||||+.|+-+|..|++.|.+|+++|+.+.+..      .  +.+...                           
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~------~--~d~~~~---------------------------  229 (479)
T 2hqm_A          185 PKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVLR------K--FDECIQ---------------------------  229 (479)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHTTCEEEEECSSSSSCT------T--SCHHHH---------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCceEEEEeCCcccc------c--cCHHHH---------------------------
Confidence            35899999999999999999999999999999876421      0  111000                           


Q ss_pred             ccccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEE
Q 014324           86 ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLV  164 (426)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI  164 (426)
                                              ..+.+.|.+   .|+ ++.++++.+++.++++..+.++   +++|+ .++.+|.||
T Consensus       230 ------------------------~~l~~~l~~---~Gv~i~~~~~v~~i~~~~~~~~~~v~---~~~G~-~~i~~D~vv  278 (479)
T 2hqm_A          230 ------------------------NTITDHYVK---EGINVHKLSKIVKVEKNVETDKLKIH---MNDSK-SIDDVDELI  278 (479)
T ss_dssp             ------------------------HHHHHHHHH---HTCEEECSCCEEEEEECC-CCCEEEE---ETTSC-EEEEESEEE
T ss_pred             ------------------------HHHHHHHHh---CCeEEEeCCEEEEEEEcCCCcEEEEE---ECCCc-EEEEcCEEE
Confidence                                    122233332   377 9999999999854333235555   56773 348999999


Q ss_pred             eccCCchhh
Q 014324          165 AADGCLSSI  173 (426)
Q Consensus       165 ~AdG~~S~v  173 (426)
                      .|.|..+.+
T Consensus       279 ~a~G~~p~~  287 (479)
T 2hqm_A          279 WTIGRKSHL  287 (479)
T ss_dssp             ECSCEEECC
T ss_pred             ECCCCCCcc
Confidence            999987665

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=97.97  E-value=5.9e-06  Score=81.74  Aligned_cols=37  Identities=19%  Similarity=0.192  Sum_probs=34.4

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP   41 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   41 (426)
                      .++||+|||||++|+++|..|++.|++|+|||+.+.+
T Consensus        42 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~   78 (523)
T 1mo9_A           42 REYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFL   78 (523)
T ss_dssp             SCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            4589999999999999999999999999999998754

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=97.97  E-value=3.1e-05  Score=71.21  Aligned_cols=102  Identities=16%  Similarity=0.162  Sum_probs=68.7

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ   85 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   85 (426)
                      ..+|+|||+|++|+-+|..|++.|.+|+++++.+.+..          .                               
T Consensus       145 ~~~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~----------~-------------------------------  183 (320)
T 1trb_A          145 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRA----------E-------------------------------  183 (320)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCC----------C-------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCcccc----------C-------------------------------
Confidence            35799999999999999999999999999998765310          0                               


Q ss_pred             ccccccccccccccCCCcchhccHHHHHHHHHhcC-CCCe-eEeeeeEEEEEEecCCceEEEEEEeccC-CceEEEeecE
Q 014324           86 ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNAL-PPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQT-DEVIEIKGNL  162 (426)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~-~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~-g~~~~~~~d~  162 (426)
                                              ..+.+.+.+.+ +.++ +++++++.++..+++ ....+++.+..+ |+..++.+|.
T Consensus       184 ------------------------~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~-~v~~v~~~~~~~~g~~~~i~~D~  238 (320)
T 1trb_A          184 ------------------------KILIKRLMDKVENGNIILHTNRTLEEVTGDQM-GVTGVRLRDTQNSDNIESLDVAG  238 (320)
T ss_dssp             ------------------------HHHHHHHHHHHHTSSEEEECSCEEEEEEECSS-SEEEEEEECCTTCCCCEEEECSE
T ss_pred             ------------------------HHHHHHHHHhcccCCeEEEcCceeEEEEcCCC-ceEEEEEEeccCCCceEEEEcCE
Confidence                                    00111122222 3578 999999999985432 222244322223 5555699999


Q ss_pred             EEeccCCchhh
Q 014324          163 LVAADGCLSSI  173 (426)
Q Consensus       163 vI~AdG~~S~v  173 (426)
                      ||.|.|.....
T Consensus       239 vv~a~G~~p~~  249 (320)
T 1trb_A          239 LFVAIGHSPNT  249 (320)
T ss_dssp             EEECSCEEESC
T ss_pred             EEEEeCCCCCh
Confidence            99999977543

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.97  E-value=3.9e-05  Score=74.50  Aligned_cols=102  Identities=22%  Similarity=0.232  Sum_probs=70.5

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ   85 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   85 (426)
                      ..+|+|||||++|+-+|..|++.|.+|+|+|+.+.+..      .  +.+..                            
T Consensus       170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~------~--~~~~~----------------------------  213 (455)
T 1ebd_A          170 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILS------G--FEKQM----------------------------  213 (455)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST------T--SCHHH----------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcccc------c--cCHHH----------------------------
Confidence            46899999999999999999999999999999876421      0  00000                            


Q ss_pred             ccccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEE
Q 014324           86 ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLV  164 (426)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI  164 (426)
                                             ...+.+.|.+   .|+ ++.++++.+++.+++  .+.+++.  .+|+..++++|.||
T Consensus       214 -----------------------~~~l~~~l~~---~gv~i~~~~~v~~i~~~~~--~~~v~~~--~~g~~~~~~~D~vv  263 (455)
T 1ebd_A          214 -----------------------AAIIKKRLKK---KGVEVVTNALAKGAEERED--GVTVTYE--ANGETKTIDADYVL  263 (455)
T ss_dssp             -----------------------HHHHHHHHHH---TTCEEEESEEEEEEEEETT--EEEEEEE--ETTEEEEEEESEEE
T ss_pred             -----------------------HHHHHHHHHH---CCCEEEeCCEEEEEEEeCC--eEEEEEE--eCCceeEEEcCEEE
Confidence                                   0122233322   477 999999999985433  4555532  23444458999999


Q ss_pred             eccCCchhh
Q 014324          165 AADGCLSSI  173 (426)
Q Consensus       165 ~AdG~~S~v  173 (426)
                      .|.|..+.+
T Consensus       264 ~a~G~~p~~  272 (455)
T 1ebd_A          264 VTVGRRPNT  272 (455)
T ss_dssp             ECSCEEESC
T ss_pred             ECcCCCccc
Confidence            999987654

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.95  E-value=5.9e-06  Score=81.30  Aligned_cols=34  Identities=24%  Similarity=0.404  Sum_probs=32.2

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAG   39 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~   39 (426)
                      ++||+||||||+|+++|..|++.|++|+|||+..
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~~   35 (500)
T 1onf_A            2 VYDLIVIGGGSGGMAAARRAARHNAKVALVEKSR   35 (500)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            3899999999999999999999999999999984

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=97.95  E-value=3e-05  Score=75.44  Aligned_cols=102  Identities=18%  Similarity=0.212  Sum_probs=70.5

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ   85 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   85 (426)
                      ..+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+..     .   +.+...                           
T Consensus       171 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-----~---~~~~~~---------------------------  215 (464)
T 2a8x_A          171 PKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRALP-----N---EDADVS---------------------------  215 (464)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST-----T---SCHHHH---------------------------
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCcccc-----c---cCHHHH---------------------------
Confidence            35899999999999999999999999999999876421     0   111000                           


Q ss_pred             ccccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEE
Q 014324           86 ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLV  164 (426)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI  164 (426)
                                              ..+.+.|.+   .|+ ++.++++.+++.++  ..+.+++.  .+|+..++.+|.||
T Consensus       216 ------------------------~~l~~~l~~---~gv~i~~~~~v~~i~~~~--~~~~v~~~--~~g~~~~~~~D~vv  264 (464)
T 2a8x_A          216 ------------------------KEIEKQFKK---LGVTILTATKVESIADGG--SQVTVTVT--KDGVAQELKAEKVL  264 (464)
T ss_dssp             ------------------------HHHHHHHHH---HTCEEECSCEEEEEEECS--SCEEEEEE--SSSCEEEEEESEEE
T ss_pred             ------------------------HHHHHHHHH---cCCEEEeCcEEEEEEEcC--CeEEEEEE--cCCceEEEEcCEEE
Confidence                                    112222321   377 99999999998533  23555531  25655568999999


Q ss_pred             eccCCchhh
Q 014324          165 AADGCLSSI  173 (426)
Q Consensus       165 ~AdG~~S~v  173 (426)
                      .|.|....+
T Consensus       265 ~a~G~~p~~  273 (464)
T 2a8x_A          265 QAIGFAPNV  273 (464)
T ss_dssp             ECSCEEECC
T ss_pred             ECCCCCccC
Confidence            999987654

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=97.93  E-value=7.1e-06  Score=83.98  Aligned_cols=38  Identities=29%  Similarity=0.462  Sum_probs=34.8

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP   42 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~   42 (426)
                      .++||+||||||+||++|+.|+++|++|+|||+.+..+
T Consensus       390 ~~~~VvIIGgG~AGl~aA~~La~~G~~V~liE~~~~~G  427 (690)
T 3k30_A          390 SDARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDLG  427 (690)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSC
T ss_pred             ccceEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence            45799999999999999999999999999999988643

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=97.93  E-value=3.3e-05  Score=75.24  Aligned_cols=103  Identities=18%  Similarity=0.228  Sum_probs=69.4

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ   85 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   85 (426)
                      ..+|+|||||+.|+-+|..|++.|.+|+++|+.+.+..      .  +.+..                            
T Consensus       174 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~------~--~d~~~----------------------------  217 (468)
T 2qae_A          174 PKTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCAP------T--LDEDV----------------------------  217 (468)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST------T--SCHHH----------------------------
T ss_pred             CceEEEECCCHHHHHHHHHHHHhCCEEEEEecCCcccc------c--CCHHH----------------------------
Confidence            35899999999999999999999999999999876421      0  10000                            


Q ss_pred             ccccccccccccccCCCcchhccHHHHHHHH-HhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEE
Q 014324           86 ATDNAKVTRTLARDDNFNFRAAHWADLHGLL-YNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLL  163 (426)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L-~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~v  163 (426)
                                             ...+.+.| .   +.|+ ++.++++.+++.+++  .+.+++. ..+|+..++++|.|
T Consensus       218 -----------------------~~~l~~~l~~---~~gv~i~~~~~v~~i~~~~~--~~~v~~~-~~~g~~~~i~~D~v  268 (468)
T 2qae_A          218 -----------------------TNALVGALAK---NEKMKFMTSTKVVGGTNNGD--SVSLEVE-GKNGKRETVTCEAL  268 (468)
T ss_dssp             -----------------------HHHHHHHHHH---HTCCEEECSCEEEEEEECSS--SEEEEEE-CC---EEEEEESEE
T ss_pred             -----------------------HHHHHHHHhh---cCCcEEEeCCEEEEEEEcCC--eEEEEEE-cCCCceEEEECCEE
Confidence                                   01222323 2   2477 999999999985433  3555432 12565456899999


Q ss_pred             EeccCCchhh
Q 014324          164 VAADGCLSSI  173 (426)
Q Consensus       164 I~AdG~~S~v  173 (426)
                      |.|.|..+..
T Consensus       269 v~a~G~~p~~  278 (468)
T 2qae_A          269 LVSVGRRPFT  278 (468)
T ss_dssp             EECSCEEECC
T ss_pred             EECCCcccCC
Confidence            9999987654

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=97.91  E-value=2.2e-05  Score=75.11  Aligned_cols=99  Identities=17%  Similarity=0.171  Sum_probs=69.8

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ   85 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   85 (426)
                      ..+|+|||+|+.|+-+|..|++.|.+|+++|+.+.+..     ..  +.                               
T Consensus       143 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~-----~~--~~-------------------------------  184 (410)
T 3ef6_A          143 ATRLLIVGGGLIGCEVATTARKLGLSVTILEAGDELLV-----RV--LG-------------------------------  184 (410)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSH-----HH--HC-------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccch-----hh--cC-------------------------------
Confidence            45899999999999999999999999999999876320     00  00                               


Q ss_pred             ccccccccccccccCCCcchhccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEE
Q 014324           86 ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLL  163 (426)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~v  163 (426)
                                              ..+.+.+.+.++ .|+ +++++++.+++.  ++....++   +++|+.  +.||.|
T Consensus       185 ------------------------~~~~~~l~~~l~~~GV~i~~~~~v~~i~~--~~~~~~v~---~~dg~~--i~aD~V  233 (410)
T 3ef6_A          185 ------------------------RRIGAWLRGLLTELGVQVELGTGVVGFSG--EGQLEQVM---ASDGRS--FVADSA  233 (410)
T ss_dssp             ------------------------HHHHHHHHHHHHHHTCEEECSCCEEEEEC--SSSCCEEE---ETTSCE--EECSEE
T ss_pred             ------------------------HHHHHHHHHHHHHCCCEEEeCCEEEEEec--cCcEEEEE---ECCCCE--EEcCEE
Confidence                                    111122222222 377 899999999874  33333444   677875  899999


Q ss_pred             EeccCCchhh
Q 014324          164 VAADGCLSSI  173 (426)
Q Consensus       164 I~AdG~~S~v  173 (426)
                      |.|.|..+..
T Consensus       234 v~a~G~~p~~  243 (410)
T 3ef6_A          234 LICVGAEPAD  243 (410)
T ss_dssp             EECSCEEECC
T ss_pred             EEeeCCeecH
Confidence            9999987653

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.90  E-value=6.8e-06  Score=79.91  Aligned_cols=34  Identities=24%  Similarity=0.300  Sum_probs=32.1

Q ss_pred             CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcc
Q 014324            4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEK   37 (426)
Q Consensus         4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~   37 (426)
                      +.++||+||||||+|+++|..|++.|++|+|||+
T Consensus         3 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~   36 (458)
T 1lvl_A            3 TIQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEG   36 (458)
T ss_dssp             CEECSEEEECCSHHHHHHHHHHHHHTCCEEEECS
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCEEEEEcc
Confidence            3468999999999999999999999999999999

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=97.89  E-value=3.4e-05  Score=75.51  Aligned_cols=101  Identities=20%  Similarity=0.183  Sum_probs=69.3

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ   85 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   85 (426)
                      ..+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+..     .   +.                               
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~-----~---~~-------------------------------  225 (482)
T 1ojt_A          185 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQ-----G---AD-------------------------------  225 (482)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSST-----T---SC-------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCcccc-----c---cC-------------------------------
Confidence            45899999999999999999999999999999876421     0   00                               


Q ss_pred             ccccccccccccccCCCcchhccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEeccC-CceEEEeecE
Q 014324           86 ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQT-DEVIEIKGNL  162 (426)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~-g~~~~~~~d~  162 (426)
                                              ..+.+.+.+.++ .|+ ++.++++.+++.++  ..+.+++.+..+ |+.  +.+|.
T Consensus       226 ------------------------~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~--~~~~v~~~~~~~~g~~--~~~D~  277 (482)
T 1ojt_A          226 ------------------------RDLVKVWQKQNEYRFDNIMVNTKTVAVEPKE--DGVYVTFEGANAPKEP--QRYDA  277 (482)
T ss_dssp             ------------------------HHHHHHHHHHHGGGEEEEECSCEEEEEEEET--TEEEEEEESSSCCSSC--EEESC
T ss_pred             ------------------------HHHHHHHHHHHHhcCCEEEECCEEEEEEEcC--CeEEEEEeccCCCceE--EEcCE
Confidence                                    011112223222 478 99999999998543  345555321011 444  78999


Q ss_pred             EEeccCCchhh
Q 014324          163 LVAADGCLSSI  173 (426)
Q Consensus       163 vI~AdG~~S~v  173 (426)
                      ||.|.|..+.+
T Consensus       278 vv~a~G~~p~~  288 (482)
T 1ojt_A          278 VLVAAGRAPNG  288 (482)
T ss_dssp             EEECCCEEECG
T ss_pred             EEECcCCCcCC
Confidence            99999987654

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=97.89  E-value=6.9e-06  Score=79.68  Aligned_cols=38  Identities=29%  Similarity=0.271  Sum_probs=34.1

Q ss_pred             CCCccEEEEcCChHHHHHHHHHHH-c------CCcEEEEcccCCC
Q 014324            4 KEKGKAVIVGGSIAGISCAHALLR-A------GWDVVVLEKAGGP   41 (426)
Q Consensus         4 ~~~~~V~IvGaG~aGl~~A~~L~~-~------G~~v~v~E~~~~~   41 (426)
                      |..+||+||||||||+++|..|++ .      |++|+|||+.+.+
T Consensus         1 m~~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~   45 (456)
T 1lqt_A            1 MRPYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTP   45 (456)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSC
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCC
Confidence            346899999999999999999999 7      9999999998764

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=97.87  E-value=9.3e-06  Score=79.63  Aligned_cols=33  Identities=15%  Similarity=0.230  Sum_probs=31.1

Q ss_pred             CCccEEEEcCChHHHHHHHHHHH-cCCcEEEEcc
Q 014324            5 EKGKAVIVGGSIAGISCAHALLR-AGWDVVVLEK   37 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~-~G~~v~v~E~   37 (426)
                      .++||+||||||+|+++|+.|++ .|++|+|||+
T Consensus         2 ~~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~   35 (490)
T 1fec_A            2 RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDL   35 (490)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEES
T ss_pred             ccccEEEECCCHHHHHHHHHHHHHcCCEEEEEec
Confidence            46899999999999999999999 9999999994

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.85  E-value=7.1e-05  Score=73.54  Aligned_cols=101  Identities=12%  Similarity=0.119  Sum_probs=71.1

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ   85 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   85 (426)
                      ..+|+|||||+.|+-+|..|++.|.+|+++|+.+.+..      .  +.+...                           
T Consensus       176 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~------~--~d~~~~---------------------------  220 (500)
T 1onf_A          176 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILR------K--FDESVI---------------------------  220 (500)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCT------T--SCHHHH---------------------------
T ss_pred             CCeEEEECChHHHHHHHHHHHHcCCeEEEEecCCccCc------c--cchhhH---------------------------
Confidence            35899999999999999999999999999999876421      0  111000                           


Q ss_pred             ccccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEE
Q 014324           86 ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLV  164 (426)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI  164 (426)
                                              ..+.+.|.+   .|+ ++.++++.+++.+++ ..+.++   +.+|+. ++.+|.||
T Consensus       221 ------------------------~~l~~~l~~---~gv~i~~~~~v~~i~~~~~-~~~~v~---~~~g~~-~~~~D~vi  268 (500)
T 1onf_A          221 ------------------------NVLENDMKK---NNINIVTFADVVEIKKVSD-KNLSIH---LSDGRI-YEHFDHVI  268 (500)
T ss_dssp             ------------------------HHHHHHHHH---TTCEEECSCCEEEEEESST-TCEEEE---ETTSCE-EEEESEEE
T ss_pred             ------------------------HHHHHHHHh---CCCEEEECCEEEEEEEcCC-ceEEEE---ECCCcE-EEECCEEE
Confidence                                    112222322   477 999999999985332 235555   567764 48999999


Q ss_pred             eccCCchhh
Q 014324          165 AADGCLSSI  173 (426)
Q Consensus       165 ~AdG~~S~v  173 (426)
                      .|.|....+
T Consensus       269 ~a~G~~p~~  277 (500)
T 1onf_A          269 YCVGRSPDT  277 (500)
T ss_dssp             ECCCBCCTT
T ss_pred             ECCCCCcCC
Confidence            999987665

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=97.84  E-value=5.9e-05  Score=72.25  Aligned_cols=100  Identities=18%  Similarity=0.246  Sum_probs=70.6

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ   85 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   85 (426)
                      ..+|+|||+|+.|+-+|..|++.|.+|+++|+.+.+..     ..  +.                               
T Consensus       152 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~l~-----~~--~~-------------------------------  193 (415)
T 3lxd_A          152 AKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLA-----RV--AG-------------------------------  193 (415)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTT-----TT--SC-------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCchhh-----hh--cC-------------------------------
Confidence            45799999999999999999999999999999876421     00  00                               


Q ss_pred             ccccccccccccccCCCcchhccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEE
Q 014324           86 ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLL  163 (426)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~v  163 (426)
                                              ..+.+.+.+.++ .|+ +++++++.+++.+ ++....|+   +++|+.  +.||.|
T Consensus       194 ------------------------~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~-~~~v~~v~---l~dG~~--i~aD~V  243 (415)
T 3lxd_A          194 ------------------------EALSEFYQAEHRAHGVDLRTGAAMDCIEGD-GTKVTGVR---MQDGSV--IPADIV  243 (415)
T ss_dssp             ------------------------HHHHHHHHHHHHHTTCEEEETCCEEEEEES-SSBEEEEE---ESSSCE--EECSEE
T ss_pred             ------------------------HHHHHHHHHHHHhCCCEEEECCEEEEEEec-CCcEEEEE---eCCCCE--EEcCEE
Confidence                                    111122222222 477 9999999999853 22222455   677875  899999


Q ss_pred             EeccCCchhh
Q 014324          164 VAADGCLSSI  173 (426)
Q Consensus       164 I~AdG~~S~v  173 (426)
                      |.|.|..+..
T Consensus       244 v~a~G~~p~~  253 (415)
T 3lxd_A          244 IVGIGIVPCV  253 (415)
T ss_dssp             EECSCCEESC
T ss_pred             EECCCCccCh
Confidence            9999987654

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=97.84  E-value=1.4e-05  Score=82.31  Aligned_cols=38  Identities=26%  Similarity=0.424  Sum_probs=34.8

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP   42 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~   42 (426)
                      ..+||+||||||||+++|..|+++|++|+|||+.+.++
T Consensus       388 ~~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~~~G  425 (729)
T 1o94_A          388 NKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIG  425 (729)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTT
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcC
Confidence            35799999999999999999999999999999988753

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=97.83  E-value=1.3e-05  Score=79.75  Aligned_cols=38  Identities=34%  Similarity=0.458  Sum_probs=34.6

Q ss_pred             CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324            4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP   41 (426)
Q Consensus         4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   41 (426)
                      ...+||+|||||++|+++|..|++.|++|+|+|+....
T Consensus         5 ~~~~D~iIvG~G~aG~~~A~~L~~~g~~VlvlE~g~~~   42 (546)
T 1kdg_A            5 ATPYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGPS   42 (546)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC
T ss_pred             CCceeEEEECcCHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence            45799999999999999999999999999999998754

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=97.82  E-value=1.3e-05  Score=78.34  Aligned_cols=39  Identities=31%  Similarity=0.486  Sum_probs=34.7

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCC-cEEEEcccCCCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGW-DVVVLEKAGGPPT   43 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~~~~   43 (426)
                      ..+||+|||||++||++|+.|++.|+ +|+|+|+.+.++.
T Consensus         3 ~~~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~~~~~gg   42 (472)
T 1b37_A            3 VGPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGG   42 (472)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBT
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCceEEEeCCCCCCC
Confidence            45899999999999999999999999 8999999987754

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=97.82  E-value=1.2e-05  Score=78.81  Aligned_cols=32  Identities=19%  Similarity=0.280  Sum_probs=30.7

Q ss_pred             CccEEEEcCChHHHHHHHHHHH-cCCcEEEEcc
Q 014324            6 KGKAVIVGGSIAGISCAHALLR-AGWDVVVLEK   37 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~-~G~~v~v~E~   37 (426)
                      ++||+||||||+|+++|+.|++ .|++|+|||+
T Consensus         7 ~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~   39 (495)
T 2wpf_A            7 AFDLVVIGAGSGGLEAGWNAATLYGKRVAVVDV   39 (495)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHCCCEEEEES
T ss_pred             ccCEEEECCChhHHHHHHHHHHhcCCeEEEEec
Confidence            5899999999999999999999 9999999994

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=97.82  E-value=7.7e-05  Score=71.82  Aligned_cols=101  Identities=21%  Similarity=0.307  Sum_probs=68.3

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ   85 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   85 (426)
                      ..+|+|||||+.|+-+|..|++.|.+|+++|+.+.+..     ..  +.+...                           
T Consensus       149 ~~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~-----~~--~~~~~~---------------------------  194 (431)
T 1q1r_A          149 DNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLE-----RV--TAPPVS---------------------------  194 (431)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTT-----TT--SCHHHH---------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCcccc-----ch--hhHHHH---------------------------
Confidence            45899999999999999999999999999999776421     00  000000                           


Q ss_pred             ccccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceE-EEEEEeccCCceEEEeecEE
Q 014324           86 ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTV-TVKAKVLQTDEVIEIKGNLL  163 (426)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v-~v~~~~~~~g~~~~~~~d~v  163 (426)
                                              ..+.+.|.+   .|+ ++.++++.+++...++..+ .++   +++|+.  +.+|.|
T Consensus       195 ------------------------~~l~~~l~~---~GV~i~~~~~v~~i~~~~~~~~v~~v~---~~~G~~--i~~D~V  242 (431)
T 1q1r_A          195 ------------------------AFYEHLHRE---AGVDIRTGTQVCGFEMSTDQQKVTAVL---CEDGTR--LPADLV  242 (431)
T ss_dssp             ------------------------HHHHHHHHH---HTCEEECSCCEEEEEECTTTCCEEEEE---ETTSCE--EECSEE
T ss_pred             ------------------------HHHHHHHHh---CCeEEEeCCEEEEEEeccCCCcEEEEE---eCCCCE--EEcCEE
Confidence                                    112222221   377 8999999998742022233 444   567764  899999


Q ss_pred             EeccCCchh
Q 014324          164 VAADGCLSS  172 (426)
Q Consensus       164 I~AdG~~S~  172 (426)
                      |.|.|..+.
T Consensus       243 v~a~G~~p~  251 (431)
T 1q1r_A          243 IAGIGLIPN  251 (431)
T ss_dssp             EECCCEEEC
T ss_pred             EECCCCCcC
Confidence            999998654

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=97.81  E-value=0.00023  Score=65.07  Aligned_cols=98  Identities=16%  Similarity=0.055  Sum_probs=68.6

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ   85 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   85 (426)
                      ..+|+|||+|++|+-+|..|++.|.+|+++++.+.+..          .                               
T Consensus       143 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~----------~-------------------------------  181 (311)
T 2q0l_A          143 NKEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDGFRC----------A-------------------------------  181 (311)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHTTSSEEEEECSSSSCCS----------C-------------------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEeeCCccCC----------C-------------------------------
Confidence            35899999999999999999999999999998765310          0                               


Q ss_pred             ccccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceE-EEEEEeccCCceEEEeecEE
Q 014324           86 ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTV-TVKAKVLQTDEVIEIKGNLL  163 (426)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v-~v~~~~~~~g~~~~~~~d~v  163 (426)
                                              ..+.+.|.+  ..++ ++.++++.++..+++  .+ .+++.+..+|+..++.+|.|
T Consensus       182 ------------------------~~~~~~l~~--~~gv~v~~~~~v~~i~~~~~--~v~~v~~~~~~~g~~~~i~~D~v  233 (311)
T 2q0l_A          182 ------------------------PITLEHAKN--NDKIEFLTPYVVEEIKGDAS--GVSSLSIKNTATNEKRELVVPGF  233 (311)
T ss_dssp             ------------------------HHHHHHHHT--CTTEEEETTEEEEEEEEETT--EEEEEEEEETTTCCEEEEECSEE
T ss_pred             ------------------------HHHHHHHhh--CCCeEEEeCCEEEEEECCCC--cEeEEEEEecCCCceEEEecCEE
Confidence                                    001111221  2478 889999999885422  22 34433334777667999999


Q ss_pred             EeccCCchh
Q 014324          164 VAADGCLSS  172 (426)
Q Consensus       164 I~AdG~~S~  172 (426)
                      |.|.|....
T Consensus       234 i~a~G~~p~  242 (311)
T 2q0l_A          234 FIFVGYDVN  242 (311)
T ss_dssp             EECSCEEEC
T ss_pred             EEEecCccC
Confidence            999997643

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=97.81  E-value=5.2e-05  Score=72.36  Aligned_cols=100  Identities=17%  Similarity=0.255  Sum_probs=70.2

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ   85 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   85 (426)
                      ..+|+|||+|+.|+-+|..|.+.|.+|+++|+.+.+..     ..  +.                               
T Consensus       142 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~-----~~--~~-------------------------------  183 (404)
T 3fg2_P          142 KKHVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVMA-----RV--VT-------------------------------  183 (404)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTT-----TT--SC-------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCcchh-----hc--cC-------------------------------
Confidence            35799999999999999999999999999999876421     00  00                               


Q ss_pred             ccccccccccccccCCCcchhccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEE
Q 014324           86 ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLL  163 (426)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~v  163 (426)
                                              ..+.+.+.+.++ .|+ +++++++.+++.++ +....|+   +++|++  +.||.|
T Consensus       184 ------------------------~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~-~~v~~V~---~~dG~~--i~aD~V  233 (404)
T 3fg2_P          184 ------------------------PEISSYFHDRHSGAGIRMHYGVRATEIAAEG-DRVTGVV---LSDGNT--LPCDLV  233 (404)
T ss_dssp             ------------------------HHHHHHHHHHHHHTTCEEECSCCEEEEEEET-TEEEEEE---ETTSCE--EECSEE
T ss_pred             ------------------------HHHHHHHHHHHHhCCcEEEECCEEEEEEecC-CcEEEEE---eCCCCE--EEcCEE
Confidence                                    111122223222 477 99999999998543 2222355   678875  899999


Q ss_pred             EeccCCchhh
Q 014324          164 VAADGCLSSI  173 (426)
Q Consensus       164 I~AdG~~S~v  173 (426)
                      |.|.|..+..
T Consensus       234 v~a~G~~p~~  243 (404)
T 3fg2_P          234 VVGVGVIPNV  243 (404)
T ss_dssp             EECCCEEECC
T ss_pred             EECcCCccCH
Confidence            9999986543

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=97.81  E-value=0.00012  Score=71.46  Aligned_cols=105  Identities=17%  Similarity=0.111  Sum_probs=70.7

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccccc
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQA   86 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   86 (426)
                      .+|+|||||+.|+-+|..|++.|.+|+++++.+.+..      .  +.+.               +              
T Consensus       188 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~------~--~d~~---------------~--------------  230 (478)
T 3dk9_A          188 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLR------S--FDSM---------------I--------------  230 (478)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT------T--SCHH---------------H--------------
T ss_pred             ccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCcccc------c--cCHH---------------H--------------
Confidence            5899999999999999999999999999998776421      0  0000               0              


Q ss_pred             cccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCce--EEEeecEE
Q 014324           87 TDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEV--IEIKGNLL  163 (426)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~--~~~~~d~v  163 (426)
                                            ...+.+.|.   +.|+ ++.++++.+++..+++..+.+++.+..+|+.  .++.+|.|
T Consensus       231 ----------------------~~~~~~~l~---~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~g~~~~~D~v  285 (478)
T 3dk9_A          231 ----------------------STNCTEELE---NAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCL  285 (478)
T ss_dssp             ----------------------HHHHHHHHH---HTTCEEETTEEEEEEEECSSSEEEEEEECCTTSCCEEEEEEEESEE
T ss_pred             ----------------------HHHHHHHHH---HCCCEEEeCCEEEEEEEcCCCcEEEEEEccCCCCcccceEEEcCEE
Confidence                                  012223332   2477 9999999999864443245555322222432  46899999


Q ss_pred             EeccCCchhh
Q 014324          164 VAADGCLSSI  173 (426)
Q Consensus       164 I~AdG~~S~v  173 (426)
                      |.|.|.....
T Consensus       286 i~a~G~~p~~  295 (478)
T 3dk9_A          286 LWAIGRVPNT  295 (478)
T ss_dssp             EECSCEEESC
T ss_pred             EEeeccccCC
Confidence            9999986544

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=97.80  E-value=1.4e-05  Score=81.28  Aligned_cols=39  Identities=31%  Similarity=0.543  Sum_probs=35.7

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPT   43 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~   43 (426)
                      ..+||+|||||++||++|..|++.|++|+|+|+.+.++.
T Consensus       106 ~~~~v~viG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg  144 (662)
T 2z3y_A          106 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGG  144 (662)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBT
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCC
Confidence            457999999999999999999999999999999987753

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=97.80  E-value=1.7e-05  Score=82.34  Aligned_cols=39  Identities=31%  Similarity=0.543  Sum_probs=35.8

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPT   43 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~   43 (426)
                      ..++|+|||||++||++|+.|+++|++|+|||+...++.
T Consensus       277 ~~~~v~viG~G~aGl~~A~~l~~~g~~v~v~E~~~~~GG  315 (852)
T 2xag_A          277 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGG  315 (852)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEecCcCCC
Confidence            357999999999999999999999999999999988753

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=97.79  E-value=7.8e-05  Score=73.66  Aligned_cols=102  Identities=15%  Similarity=0.144  Sum_probs=71.4

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccccc
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQA   86 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   86 (426)
                      .+|+|||||..|+-+|..|++.|.+|+++|+.+.+..     .   +.+.               +              
T Consensus       215 ~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~-----~---~~~~---------------~--------------  257 (523)
T 1mo9_A          215 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKL-----I---KDNE---------------T--------------  257 (523)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTT-----C---CSHH---------------H--------------
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEecCcccc-----c---ccHH---------------H--------------
Confidence            6899999999999999999999999999999876421     0   0000               0              


Q ss_pred             cccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCce--EEEEEEeccCCceEEEeecEE
Q 014324           87 TDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTT--VTVKAKVLQTDEVIEIKGNLL  163 (426)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~--v~v~~~~~~~g~~~~~~~d~v  163 (426)
                                            ...+.+.|.   +.|+ ++.+++|.+++.++++..  +.|+   +.+|+ .++++|.|
T Consensus       258 ----------------------~~~l~~~l~---~~GV~i~~~~~V~~i~~~~~~~v~~~~v~---~~~G~-~~i~aD~V  308 (523)
T 1mo9_A          258 ----------------------RAYVLDRMK---EQGMEIISGSNVTRIEEDANGRVQAVVAM---TPNGE-MRIETDFV  308 (523)
T ss_dssp             ----------------------HHHHHHHHH---HTTCEEESSCEEEEEEECTTSBEEEEEEE---ETTEE-EEEECSCE
T ss_pred             ----------------------HHHHHHHHH---hCCcEEEECCEEEEEEEcCCCceEEEEEE---ECCCc-EEEEcCEE
Confidence                                  022223332   2478 999999999985433311  4555   56675 24899999


Q ss_pred             EeccCCchhhh
Q 014324          164 VAADGCLSSIR  174 (426)
Q Consensus       164 I~AdG~~S~vR  174 (426)
                      |.|.|..+...
T Consensus       309 v~A~G~~p~~~  319 (523)
T 1mo9_A          309 FLGLGEQPRSA  319 (523)
T ss_dssp             EECCCCEECCH
T ss_pred             EECcCCccCCc
Confidence            99999887653

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=97.79  E-value=0.00014  Score=71.02  Aligned_cols=104  Identities=25%  Similarity=0.255  Sum_probs=70.4

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ   85 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   85 (426)
                      ..+|+|||||+.|+-+|..|++.|.+|+++++.....       .  +.+..                            
T Consensus       187 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~l~-------~--~d~~~----------------------------  229 (483)
T 3dgh_A          187 PGKTLVVGAGYIGLECAGFLKGLGYEPTVMVRSIVLR-------G--FDQQM----------------------------  229 (483)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCSST-------T--SCHHH----------------------------
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCc-------c--cCHHH----------------------------
Confidence            3579999999999999999999999999998742210       0  00000                            


Q ss_pred             ccccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEE
Q 014324           86 ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLV  164 (426)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI  164 (426)
                                             ...+.+.|.   +.|+ ++.++++.+++..++ ..+.+++.+..+|+..++.+|.||
T Consensus       230 -----------------------~~~l~~~l~---~~Gv~i~~~~~v~~i~~~~~-~~~~v~~~~~~~~~~~~~~~D~vi  282 (483)
T 3dgh_A          230 -----------------------AELVAASME---ERGIPFLRKTVPLSVEKQDD-GKLLVKYKNVETGEESEDVYDTVL  282 (483)
T ss_dssp             -----------------------HHHHHHHHH---HTTCCEEETEEEEEEEECTT-SCEEEEEEETTTCCEEEEEESEEE
T ss_pred             -----------------------HHHHHHHHH---hCCCEEEeCCEEEEEEEcCC-CcEEEEEecCCCCceeEEEcCEEE
Confidence                                   011222232   2477 999999999986433 345566544444556679999999


Q ss_pred             eccCCchhh
Q 014324          165 AADGCLSSI  173 (426)
Q Consensus       165 ~AdG~~S~v  173 (426)
                      .|.|.....
T Consensus       283 ~a~G~~p~~  291 (483)
T 3dgh_A          283 WAIGRKGLV  291 (483)
T ss_dssp             ECSCEEECC
T ss_pred             ECcccccCc
Confidence            999986543

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=97.79  E-value=0.00021  Score=65.21  Aligned_cols=99  Identities=17%  Similarity=0.142  Sum_probs=69.0

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ   85 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   85 (426)
                      ..+|+|||+|++|+-+|..|++.|.+|+++++.+.+.          ..                               
T Consensus       144 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~----------~~-------------------------------  182 (310)
T 1fl2_A          144 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMK----------AD-------------------------------  182 (310)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCC----------SC-------------------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCCEEEEEEeCcccC----------cc-------------------------------
Confidence            3579999999999999999999999999999876531          00                               


Q ss_pred             ccccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEE
Q 014324           86 ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLV  164 (426)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI  164 (426)
                                              ..+.+.|.+  ..++ ++.++++.++..++ +....+++.+..+|+..++.+|.||
T Consensus       183 ------------------------~~~~~~l~~--~~gv~v~~~~~v~~i~~~~-~~v~~v~~~~~~~g~~~~i~~D~vi  235 (310)
T 1fl2_A          183 ------------------------QVLQDKLRS--LKNVDIILNAQTTEVKGDG-SKVVGLEYRDRVSGDIHNIELAGIF  235 (310)
T ss_dssp             ------------------------HHHHHHHHT--CTTEEEESSEEEEEEEESS-SSEEEEEEEETTTCCEEEEECSEEE
T ss_pred             ------------------------HHHHHHHhh--CCCeEEecCCceEEEEcCC-CcEEEEEEEECCCCcEEEEEcCEEE
Confidence                                    011122221  1477 89999999998432 2222455444456776679999999


Q ss_pred             eccCCchh
Q 014324          165 AADGCLSS  172 (426)
Q Consensus       165 ~AdG~~S~  172 (426)
                      .|.|....
T Consensus       236 ~a~G~~p~  243 (310)
T 1fl2_A          236 VQIGLLPN  243 (310)
T ss_dssp             ECSCEEES
T ss_pred             EeeCCccC
Confidence            99997643

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=97.79  E-value=0.00018  Score=70.42  Aligned_cols=104  Identities=18%  Similarity=0.170  Sum_probs=70.3

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ   85 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   85 (426)
                      ..+|+|||||+.|+-+|..|++.|.+|+++++.....       .  +.+..                            
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~l~-------~--~d~~~----------------------------  227 (488)
T 3dgz_A          185 PGKTLVVGASYVALECAGFLTGIGLDTTVMMRSIPLR-------G--FDQQM----------------------------  227 (488)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCSST-------T--SCHHH----------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCceEEEEcCcccc-------c--CCHHH----------------------------
Confidence            3579999999999999999999999999999753211       0  00000                            


Q ss_pred             ccccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEE
Q 014324           86 ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLV  164 (426)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI  164 (426)
                                             ...+.+.|.   +.|+ ++.++++.+++..+ +..+.+++.+..+|+..++.+|.||
T Consensus       228 -----------------------~~~l~~~l~---~~gv~~~~~~~v~~i~~~~-~~~~~v~~~~~~~g~~~~~~~D~vi  280 (488)
T 3dgz_A          228 -----------------------SSLVTEHME---SHGTQFLKGCVPSHIKKLP-TNQLQVTWEDHASGKEDTGTFDTVL  280 (488)
T ss_dssp             -----------------------HHHHHHHHH---HTTCEEEETEEEEEEEECT-TSCEEEEEEETTTTEEEEEEESEEE
T ss_pred             -----------------------HHHHHHHHH---HCCCEEEeCCEEEEEEEcC-CCcEEEEEEeCCCCeeEEEECCEEE
Confidence                                   011222232   2477 99999999998533 3345555444444665568999999


Q ss_pred             eccCCchhh
Q 014324          165 AADGCLSSI  173 (426)
Q Consensus       165 ~AdG~~S~v  173 (426)
                      .|.|.....
T Consensus       281 ~a~G~~p~~  289 (488)
T 3dgz_A          281 WAIGRVPET  289 (488)
T ss_dssp             ECSCEEESC
T ss_pred             EcccCCccc
Confidence            999986544

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=97.78  E-value=1.6e-05  Score=75.30  Aligned_cols=35  Identities=20%  Similarity=0.351  Sum_probs=31.1

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcC--CcEEEEcccC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAG--WDVVVLEKAG   39 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G--~~v~v~E~~~   39 (426)
                      .++||+||||||+|+++|..|++.|  .+|+|+|+..
T Consensus         3 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~   39 (384)
T 2v3a_A            3 ERAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADD   39 (384)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHTTCSSSCEEEECSSC
T ss_pred             CCCcEEEECChHHHHHHHHHHHhhCCCCCEEEEECCC
Confidence            3589999999999999999999999  5689999875

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=97.76  E-value=7.9e-05  Score=73.21  Aligned_cols=99  Identities=15%  Similarity=0.191  Sum_probs=70.5

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ   85 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   85 (426)
                      ..+|+|||||+.|+-+|..|++.|.+|+++|+.+.+..     .   +.+..                            
T Consensus       182 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~-----~---~d~~~----------------------------  225 (499)
T 1xdi_A          182 PDHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHVLP-----Y---EDADA----------------------------  225 (499)
T ss_dssp             CSSEEEESCSHHHHHHHHHHHHTTCCEEEECSSSSSSC-----C---SSHHH----------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcccc-----c---cCHHH----------------------------
Confidence            35899999999999999999999999999998876421     0   11100                            


Q ss_pred             ccccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEE
Q 014324           86 ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLV  164 (426)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI  164 (426)
                                             ...+.+.|.   +.|+ ++.+++|.+++.++  ..+.++   +.+|++  +++|.||
T Consensus       226 -----------------------~~~l~~~l~---~~GV~i~~~~~V~~i~~~~--~~v~v~---~~~g~~--i~aD~Vv  272 (499)
T 1xdi_A          226 -----------------------ALVLEESFA---ERGVRLFKNARAASVTRTG--AGVLVT---MTDGRT--VEGSHAL  272 (499)
T ss_dssp             -----------------------HHHHHHHHH---HTTCEEETTCCEEEEEECS--SSEEEE---ETTSCE--EEESEEE
T ss_pred             -----------------------HHHHHHHHH---HCCCEEEeCCEEEEEEEeC--CEEEEE---ECCCcE--EEcCEEE
Confidence                                   012222232   2477 99999999998533  245555   556654  8999999


Q ss_pred             eccCCchhh
Q 014324          165 AADGCLSSI  173 (426)
Q Consensus       165 ~AdG~~S~v  173 (426)
                      .|.|..+.+
T Consensus       273 ~a~G~~p~~  281 (499)
T 1xdi_A          273 MTIGSVPNT  281 (499)
T ss_dssp             ECCCEEECC
T ss_pred             ECCCCCcCC
Confidence            999988654

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=97.76  E-value=0.00016  Score=66.75  Aligned_cols=98  Identities=16%  Similarity=0.101  Sum_probs=69.8

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ   85 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   85 (426)
                      ..+|+|||+|++|+-+|..|++.|.+|+++++.+.+..                                          
T Consensus       173 ~~~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~~~~~------------------------------------------  210 (338)
T 3itj_A          173 NKPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDHLRA------------------------------------------  210 (338)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCS------------------------------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccCC------------------------------------------
Confidence            45799999999999999999999999999998775310                                          


Q ss_pred             ccccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEE
Q 014324           86 ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLV  164 (426)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI  164 (426)
                         .                    ..+.+.|.+  ..|+ ++.++++.+++.+. +....+++.+..+|+..++.+|.||
T Consensus       211 ---~--------------------~~~~~~l~~--~~gv~i~~~~~v~~i~~~~-~~~~~v~~~~~~~g~~~~i~~D~vi  264 (338)
T 3itj_A          211 ---S--------------------TIMQKRAEK--NEKIEILYNTVALEAKGDG-KLLNALRIKNTKKNEETDLPVSGLF  264 (338)
T ss_dssp             ---C--------------------HHHHHHHHH--CTTEEEECSEEEEEEEESS-SSEEEEEEEETTTTEEEEEECSEEE
T ss_pred             ---C--------------------HHHHHHHHh--cCCeEEeecceeEEEEccc-CcEEEEEEEECCCCceEEEEeCEEE
Confidence               0                    111112221  1378 89999999998533 2233355544456666679999999


Q ss_pred             eccCCch
Q 014324          165 AADGCLS  171 (426)
Q Consensus       165 ~AdG~~S  171 (426)
                      .|.|...
T Consensus       265 ~a~G~~p  271 (338)
T 3itj_A          265 YAIGHTP  271 (338)
T ss_dssp             ECSCEEE
T ss_pred             EEeCCCC
Confidence            9999764

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=97.75  E-value=2e-05  Score=80.35  Aligned_cols=37  Identities=22%  Similarity=0.323  Sum_probs=34.4

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP   41 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   41 (426)
                      ..+||+||||||||+++|..|+++|++|+|||+.+.+
T Consensus       372 ~~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~  408 (671)
T 1ps9_A          372 QKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEI  408 (671)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence            3579999999999999999999999999999998875

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=97.75  E-value=9e-05  Score=70.79  Aligned_cols=95  Identities=17%  Similarity=0.181  Sum_probs=67.2

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ   85 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   85 (426)
                      ..+|+|||||+.|+-+|..|++.|.+|+++|+.+.+..     ..  +.+..                            
T Consensus       145 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-----~~--~~~~~----------------------------  189 (408)
T 2gqw_A          145 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMS-----RA--APATL----------------------------  189 (408)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST-----TT--SCHHH----------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCcccc-----cc--cCHHH----------------------------
Confidence            46899999999999999999999999999999876421     00  00000                            


Q ss_pred             ccccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEE
Q 014324           86 ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLV  164 (426)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI  164 (426)
                                             ...+.+.|.   +.|+ ++.++++.+++  ++  .|  +   +.+|+.  +++|.||
T Consensus       190 -----------------------~~~l~~~l~---~~GV~i~~~~~v~~i~--~~--~v--~---~~~g~~--i~~D~vi  232 (408)
T 2gqw_A          190 -----------------------ADFVARYHA---AQGVDLRFERSVTGSV--DG--VV--L---LDDGTR--IAADMVV  232 (408)
T ss_dssp             -----------------------HHHHHHHHH---HTTCEEEESCCEEEEE--TT--EE--E---ETTSCE--EECSEEE
T ss_pred             -----------------------HHHHHHHHH---HcCcEEEeCCEEEEEE--CC--EE--E---ECCCCE--EEcCEEE
Confidence                                   012222232   2477 99999999987  22  33  3   567764  8999999


Q ss_pred             eccCCchh
Q 014324          165 AADGCLSS  172 (426)
Q Consensus       165 ~AdG~~S~  172 (426)
                      .|.|....
T Consensus       233 ~a~G~~p~  240 (408)
T 2gqw_A          233 VGIGVLAN  240 (408)
T ss_dssp             ECSCEEEC
T ss_pred             ECcCCCcc
Confidence            99998754

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=97.74  E-value=0.0001  Score=72.23  Aligned_cols=100  Identities=17%  Similarity=0.105  Sum_probs=71.0

Q ss_pred             CccEEEEcCChHHHHHHHHHHHc---CCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeec
Q 014324            6 KGKAVIVGGSIAGISCAHALLRA---GWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTID   82 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~---G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~   82 (426)
                      ..+|+|||||+.|+-+|..|++.   |.+|+++|+.+.+..      .  +.+..                         
T Consensus       187 ~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~------~--~d~~~-------------------------  233 (490)
T 1fec_A          187 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILR------G--FDSEL-------------------------  233 (490)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSST------T--SCHHH-------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCCccc------c--cCHHH-------------------------
Confidence            35899999999999999999999   999999999876421      0  10000                         


Q ss_pred             cccccccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeec
Q 014324           83 QNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGN  161 (426)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d  161 (426)
                                                ...+.+.|.   +.|+ +++++++.+++.+++ ..+.++   +.+|+.  +++|
T Consensus       234 --------------------------~~~l~~~l~---~~GV~i~~~~~v~~i~~~~~-~~~~v~---~~~G~~--i~~D  278 (490)
T 1fec_A          234 --------------------------RKQLTEQLR---ANGINVRTHENPAKVTKNAD-GTRHVV---FESGAE--ADYD  278 (490)
T ss_dssp             --------------------------HHHHHHHHH---HTTEEEEETCCEEEEEECTT-SCEEEE---ETTSCE--EEES
T ss_pred             --------------------------HHHHHHHHH---hCCCEEEeCCEEEEEEEcCC-CEEEEE---ECCCcE--EEcC
Confidence                                      012223332   2488 999999999985432 235555   567764  8999


Q ss_pred             EEEeccCCchhh
Q 014324          162 LLVAADGCLSSI  173 (426)
Q Consensus       162 ~vI~AdG~~S~v  173 (426)
                      .||.|.|..+.+
T Consensus       279 ~vv~a~G~~p~~  290 (490)
T 1fec_A          279 VVMLAIGRVPRS  290 (490)
T ss_dssp             EEEECSCEEESC
T ss_pred             EEEEccCCCcCc
Confidence            999999987654

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=97.73  E-value=0.00011  Score=72.18  Aligned_cols=99  Identities=13%  Similarity=0.193  Sum_probs=70.3

Q ss_pred             ccEEEEcCChHHHHHHHHHHHc---CCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecc
Q 014324            7 GKAVIVGGSIAGISCAHALLRA---GWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQ   83 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~---G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~   83 (426)
                      .+|+|||||..|+-+|..|++.   |.+|+|+|+.+.+..      .  +.+..                          
T Consensus       192 ~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~------~--~d~~~--------------------------  237 (495)
T 2wpf_A          192 RRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLILR------G--FDETI--------------------------  237 (495)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSCT------T--SCHHH--------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCcccc------c--cCHHH--------------------------
Confidence            5899999999999999999999   999999998876421      0  11000                          


Q ss_pred             ccccccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecE
Q 014324           84 NQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNL  162 (426)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~  162 (426)
                                               ...+.+.|.   +.|+ +++++++.+++.+++ ..+.++   +.+|+.  +++|.
T Consensus       238 -------------------------~~~l~~~l~---~~GV~i~~~~~v~~i~~~~~-~~~~v~---~~~G~~--i~~D~  283 (495)
T 2wpf_A          238 -------------------------REEVTKQLT---ANGIEIMTNENPAKVSLNTD-GSKHVT---FESGKT--LDVDV  283 (495)
T ss_dssp             -------------------------HHHHHHHHH---HTTCEEEESCCEEEEEECTT-SCEEEE---ETTSCE--EEESE
T ss_pred             -------------------------HHHHHHHHH---hCCCEEEeCCEEEEEEEcCC-ceEEEE---ECCCcE--EEcCE
Confidence                                     012222232   2478 999999999985432 235555   567764  89999


Q ss_pred             EEeccCCchhh
Q 014324          163 LVAADGCLSSI  173 (426)
Q Consensus       163 vI~AdG~~S~v  173 (426)
                      ||.|.|....+
T Consensus       284 vv~a~G~~p~~  294 (495)
T 2wpf_A          284 VMMAIGRIPRT  294 (495)
T ss_dssp             EEECSCEEECC
T ss_pred             EEECCCCcccc
Confidence            99999987654

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=97.72  E-value=0.00014  Score=70.90  Aligned_cols=103  Identities=20%  Similarity=0.195  Sum_probs=70.1

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ   85 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   85 (426)
                      ..+|+|||+|+.|+-+|..|++.|.+|+++++.+.+..      .  +.+..                            
T Consensus       180 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~------~--~~~~~----------------------------  223 (476)
T 3lad_A          180 PGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLP------A--VDEQV----------------------------  223 (476)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST------T--SCHHH----------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCc------c--cCHHH----------------------------
Confidence            35799999999999999999999999999999876321      0  00000                            


Q ss_pred             ccccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEE
Q 014324           86 ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLV  164 (426)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI  164 (426)
                                             ...+.+.|.   +.|+ ++.++++.+++.+++  .+.+++. ..+| ..++.+|.||
T Consensus       224 -----------------------~~~l~~~l~---~~Gv~v~~~~~v~~i~~~~~--~~~v~~~-~~~g-~~~~~~D~vi  273 (476)
T 3lad_A          224 -----------------------AKEAQKILT---KQGLKILLGARVTGTEVKNK--QVTVKFV-DAEG-EKSQAFDKLI  273 (476)
T ss_dssp             -----------------------HHHHHHHHH---HTTEEEEETCEEEEEEECSS--CEEEEEE-SSSE-EEEEEESEEE
T ss_pred             -----------------------HHHHHHHHH---hCCCEEEECCEEEEEEEcCC--EEEEEEE-eCCC-cEEEECCEEE
Confidence                                   012222232   2478 999999999986433  4555432 1233 3458999999


Q ss_pred             eccCCchhhh
Q 014324          165 AADGCLSSIR  174 (426)
Q Consensus       165 ~AdG~~S~vR  174 (426)
                      .|.|......
T Consensus       274 ~a~G~~p~~~  283 (476)
T 3lad_A          274 VAVGRRPVTT  283 (476)
T ss_dssp             ECSCEEECCT
T ss_pred             EeeCCcccCC
Confidence            9999876553

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=97.71  E-value=2.4e-05  Score=83.46  Aligned_cols=37  Identities=35%  Similarity=0.553  Sum_probs=33.8

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCC-cEEEEcccCCCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGW-DVVVLEKAGGPP   42 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~~~   42 (426)
                      .+||+||||||||+++|..|++.|+ +|+|||+.+.++
T Consensus       187 ~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~G  224 (1025)
T 1gte_A          187 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVG  224 (1025)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCS
T ss_pred             CCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCCCC
Confidence            5799999999999999999999999 799999987654

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=97.71  E-value=0.00014  Score=72.57  Aligned_cols=35  Identities=29%  Similarity=0.437  Sum_probs=32.6

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP   41 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   41 (426)
                      .+|+|||||++|+-+|..|++.|.+|+++++.+.+
T Consensus       152 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  186 (565)
T 3ntd_A          152 EHATVVGGGFIGLEMMESLHHLGIKTTLLELADQV  186 (565)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCcc
Confidence            48999999999999999999999999999998764

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=97.70  E-value=7.7e-05  Score=72.76  Aligned_cols=98  Identities=23%  Similarity=0.316  Sum_probs=69.7

Q ss_pred             CccEEEEcCChHHHHHHHHHHHc-CCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccc
Q 014324            6 KGKAVIVGGSIAGISCAHALLRA-GWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQN   84 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~-G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~   84 (426)
                      ..+|+|||+|++|+-+|..|++. |.+|+++|+.+.+..     ..  +.                              
T Consensus       159 ~~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~~l~-----~~--~~------------------------------  201 (472)
T 3iwa_A          159 VSKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQIMP-----GF--TS------------------------------  201 (472)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSSSSST-----TT--SC------------------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccCcccc-----cc--cC------------------------------
Confidence            46899999999999999999999 999999999875321     00  00                              


Q ss_pred             cccccccccccccccCCCcchhccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecE
Q 014324           85 QATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNL  162 (426)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~  162 (426)
                                               ..+.+.+.+.++ .|+ ++.++++.+++.+  +..++++   +.+|++  +++|.
T Consensus       202 -------------------------~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~--~~~v~v~---~~~g~~--i~aD~  249 (472)
T 3iwa_A          202 -------------------------KSLSQMLRHDLEKNDVVVHTGEKVVRLEGE--NGKVARV---ITDKRT--LDADL  249 (472)
T ss_dssp             -------------------------HHHHHHHHHHHHHTTCEEECSCCEEEEEES--SSBEEEE---EESSCE--EECSE
T ss_pred             -------------------------HHHHHHHHHHHHhcCCEEEeCCEEEEEEcc--CCeEEEE---EeCCCE--EEcCE
Confidence                                     111222233222 477 9999999999852  3345555   457764  89999


Q ss_pred             EEeccCCchh
Q 014324          163 LVAADGCLSS  172 (426)
Q Consensus       163 vI~AdG~~S~  172 (426)
                      ||.|.|..+.
T Consensus       250 Vv~a~G~~p~  259 (472)
T 3iwa_A          250 VILAAGVSPN  259 (472)
T ss_dssp             EEECSCEEEC
T ss_pred             EEECCCCCcC
Confidence            9999998654

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=97.70  E-value=0.00032  Score=64.54  Aligned_cols=97  Identities=19%  Similarity=0.239  Sum_probs=68.1

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccccc
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQA   86 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   86 (426)
                      .+|+|||+|++|+-+|..|++.|.+|+++++.+.+..          .+                               
T Consensus       153 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~----------~~-------------------------------  191 (325)
T 2q7v_A          153 KKVVVIGGGDAAVEEGMFLTKFADEVTVIHRRDTLRA----------NK-------------------------------  191 (325)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCCS----------CH-------------------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEeCCCcCCc----------ch-------------------------------
Confidence            5799999999999999999999999999998765310          00                               


Q ss_pred             cccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEe
Q 014324           87 TDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVA  165 (426)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~  165 (426)
                                              .+.+.+.+  ..++ ++.++++.++..  ++....+++.+..+|+..++.+|.||.
T Consensus       192 ------------------------~~~~~l~~--~~gv~i~~~~~v~~i~~--~~~v~~v~~~~~~~g~~~~i~~D~vi~  243 (325)
T 2q7v_A          192 ------------------------VAQARAFA--NPKMKFIWDTAVEEIQG--ADSVSGVKLRNLKTGEVSELATDGVFI  243 (325)
T ss_dssp             ------------------------HHHHHHHT--CTTEEEECSEEEEEEEE--SSSEEEEEEEETTTCCEEEEECSEEEE
T ss_pred             ------------------------HHHHHHHh--cCCceEecCCceEEEcc--CCcEEEEEEEECCCCcEEEEEcCEEEE
Confidence                                    01111111  1478 899999999985  222224444333478766799999999


Q ss_pred             ccCCchh
Q 014324          166 ADGCLSS  172 (426)
Q Consensus       166 AdG~~S~  172 (426)
                      |.|....
T Consensus       244 a~G~~p~  250 (325)
T 2q7v_A          244 FIGHVPN  250 (325)
T ss_dssp             CSCEEES
T ss_pred             ccCCCCC
Confidence            9997643

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=97.69  E-value=7.3e-05  Score=73.05  Aligned_cols=37  Identities=22%  Similarity=0.407  Sum_probs=33.4

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP   41 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   41 (426)
                      ...+|+|||||++|+-+|..|++.|.+|+|+|+.+.+
T Consensus       185 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  221 (480)
T 3cgb_A          185 KVEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDHI  221 (480)
T ss_dssp             CCCEEEEECCHHHHHHHHHHHHHTTCEEEEECCGGGT
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCch
Confidence            3468999999999999999999999999999998753

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=97.68  E-value=0.00029  Score=64.61  Aligned_cols=97  Identities=18%  Similarity=0.120  Sum_probs=68.0

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccccc
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQA   86 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   86 (426)
                      .+|+|||+|++|+-+|..|++.|.+|+++++.+.+..          .                                
T Consensus       156 ~~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~~~~~~----------~--------------------------------  193 (319)
T 3cty_A          156 KRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPKYMC----------E--------------------------------  193 (319)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTTBSEEEEECSSSSCCS----------C--------------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCcEEEEEcCCccCC----------C--------------------------------
Confidence            5799999999999999999999999999998654210          0                                


Q ss_pred             cccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEe
Q 014324           87 TDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVA  165 (426)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~  165 (426)
                                             ..+.+.+.   +.|+ +++++++.++..++ +....+++.+..+|+..++.+|.||.
T Consensus       194 -----------------------~~l~~~l~---~~gv~i~~~~~v~~i~~~~-~~v~~v~~~~~~~g~~~~i~~D~vi~  246 (319)
T 3cty_A          194 -----------------------NAYVQEIK---KRNIPYIMNAQVTEIVGDG-KKVTGVKYKDRTTGEEKLIETDGVFI  246 (319)
T ss_dssp             -----------------------HHHHHHHH---HTTCCEECSEEEEEEEESS-SSEEEEEEEETTTCCEEEECCSEEEE
T ss_pred             -----------------------HHHHHHHh---cCCcEEEcCCeEEEEecCC-ceEEEEEEEEcCCCceEEEecCEEEE
Confidence                                   00111122   2577 89999999998532 21223443333477766799999999


Q ss_pred             ccCCchh
Q 014324          166 ADGCLSS  172 (426)
Q Consensus       166 AdG~~S~  172 (426)
                      |.|....
T Consensus       247 a~G~~p~  253 (319)
T 3cty_A          247 YVGLIPQ  253 (319)
T ss_dssp             CCCEEEC
T ss_pred             eeCCccC
Confidence            9997654

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.68  E-value=5.8e-05  Score=71.01  Aligned_cols=35  Identities=31%  Similarity=0.599  Sum_probs=32.6

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP   41 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   41 (426)
                      .+|+|||||++|+-+|..|++.|.+|+++|+.+.+
T Consensus       144 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  178 (367)
T 1xhc_A          144 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMF  178 (367)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCC
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCee
Confidence            57999999999999999999999999999998764

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=97.68  E-value=0.00046  Score=63.65  Aligned_cols=101  Identities=17%  Similarity=0.169  Sum_probs=69.4

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ   85 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   85 (426)
                      ..+|+|||+|++|+-+|..|++.|.+|+++++.+.+..          .                               
T Consensus       159 ~~~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~----------~-------------------------------  197 (333)
T 1vdc_A          159 NKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRA----------S-------------------------------  197 (333)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCS----------C-------------------------------
T ss_pred             CCeEEEECCChHHHHHHHHHHhcCCeEEEEecCCcCCc----------c-------------------------------
Confidence            35899999999999999999999999999998865310          0                               


Q ss_pred             ccccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceE-EEEEEeccCCceEEEeecEE
Q 014324           86 ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTV-TVKAKVLQTDEVIEIKGNLL  163 (426)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v-~v~~~~~~~g~~~~~~~d~v  163 (426)
                                             ....++.+   -+.++ ++.++++.++..+++...+ .+++.+..+|+..++.+|.|
T Consensus       198 -----------------------~~~~~~~~---~~~gv~i~~~~~v~~i~~~~~~~~v~~v~~~~~~~g~~~~i~~D~v  251 (333)
T 1vdc_A          198 -----------------------KIMQQRAL---SNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGL  251 (333)
T ss_dssp             -----------------------HHHHHHHH---TCTTEEEECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECSEE
T ss_pred             -----------------------HHHHHHHH---hCCCeeEecCCceEEEeCCCCccceeeEEEEecCCCceEEEecCEE
Confidence                                   00001111   13578 8899999999853321123 24443334676667999999


Q ss_pred             EeccCCchhh
Q 014324          164 VAADGCLSSI  173 (426)
Q Consensus       164 I~AdG~~S~v  173 (426)
                      |.|.|.....
T Consensus       252 i~a~G~~p~~  261 (333)
T 1vdc_A          252 FFAIGHEPAT  261 (333)
T ss_dssp             EECSCEEESC
T ss_pred             EEEeCCccch
Confidence            9999986443

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=97.67  E-value=3.2e-05  Score=75.07  Aligned_cols=37  Identities=30%  Similarity=0.344  Sum_probs=33.8

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcC--CcEEEEcccCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAG--WDVVVLEKAGGP   41 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G--~~v~v~E~~~~~   41 (426)
                      ..+||+||||||+|+.+|..|++.|  ++|+|||+.+.+
T Consensus         5 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~   43 (460)
T 1cjc_A            5 QTPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVP   43 (460)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSS
T ss_pred             CCceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcC
Confidence            4579999999999999999999998  999999998875

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=97.67  E-value=0.00025  Score=68.62  Aligned_cols=98  Identities=13%  Similarity=0.142  Sum_probs=69.0

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ   85 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   85 (426)
                      ..+|+|||+|..|+-+|..|++.|.+|+++|+.+.+..     ..  +.                               
T Consensus       147 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-----~~--~d-------------------------------  188 (452)
T 3oc4_A          147 SQTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENLLP-----KY--FD-------------------------------  188 (452)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST-----TT--CC-------------------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcccc-----cc--CC-------------------------------
Confidence            35799999999999999999999999999999876421     00  00                               


Q ss_pred             ccccccccccccccCCCcchhccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEE
Q 014324           86 ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLL  163 (426)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~v  163 (426)
                                              ..+.+.+.+.++ .|+ ++.++++.+++..++  .+.++   +++|   ++++|.|
T Consensus       189 ------------------------~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~--~v~v~---~~~g---~i~aD~V  236 (452)
T 3oc4_A          189 ------------------------KEMVAEVQKSLEKQAVIFHFEETVLGIEETAN--GIVLE---TSEQ---EISCDSG  236 (452)
T ss_dssp             ------------------------HHHHHHHHHHHHTTTEEEEETCCEEEEEECSS--CEEEE---ESSC---EEEESEE
T ss_pred             ------------------------HHHHHHHHHHHHHcCCEEEeCCEEEEEEccCC--eEEEE---ECCC---EEEeCEE
Confidence                                    111122233222 588 999999999985333  44554   4455   3899999


Q ss_pred             EeccCCchhh
Q 014324          164 VAADGCLSSI  173 (426)
Q Consensus       164 I~AdG~~S~v  173 (426)
                      |.|.|.....
T Consensus       237 v~A~G~~p~~  246 (452)
T 3oc4_A          237 IFALNLHPQL  246 (452)
T ss_dssp             EECSCCBCCC
T ss_pred             EECcCCCCCh
Confidence            9999986543

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=97.67  E-value=0.0004  Score=68.47  Aligned_cols=103  Identities=25%  Similarity=0.286  Sum_probs=67.6

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccccc
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQA   86 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   86 (426)
                      .+|+|||||+.|+-+|..|++.|.+|+|+++.....       .  +.+..                             
T Consensus       211 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~l~-------~--~d~~~-----------------------------  252 (519)
T 3qfa_A          211 GKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLR-------G--FDQDM-----------------------------  252 (519)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCSST-------T--SCHHH-----------------------------
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEecccccc-------c--CCHHH-----------------------------
Confidence            469999999999999999999999999999742110       0  00000                             


Q ss_pred             cccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecC--CceEEEEEEeccCC-ceEEEeecE
Q 014324           87 TDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEV--KTTVTVKAKVLQTD-EVIEIKGNL  162 (426)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~--~~~v~v~~~~~~~g-~~~~~~~d~  162 (426)
                                            ...+.+.|.   +.|+ ++.++++..++..++  ...+.+++.. .+| +..++.+|.
T Consensus       253 ----------------------~~~~~~~l~---~~GV~v~~~~~v~~v~~~~~~~~~~~~v~~~~-~~g~~~~~~~~D~  306 (519)
T 3qfa_A          253 ----------------------ANKIGEHME---EHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQS-TNSEEIIEGEYNT  306 (519)
T ss_dssp             ----------------------HHHHHHHHH---HTTCEEEESEEEEEEEEEECCTTCEEEEEEEE-SSSSCEEEEEESE
T ss_pred             ----------------------HHHHHHHHH---HCCCEEEeCCeEEEEEEccCCCCceEEEEEEE-CCCcEEEEEECCE
Confidence                                  011222232   2477 889988888875432  1345555432 344 435688999


Q ss_pred             EEeccCCchhh
Q 014324          163 LVAADGCLSSI  173 (426)
Q Consensus       163 vI~AdG~~S~v  173 (426)
                      ||.|.|....+
T Consensus       307 vi~a~G~~p~~  317 (519)
T 3qfa_A          307 VMLAIGRDACT  317 (519)
T ss_dssp             EEECSCEEESC
T ss_pred             EEEecCCcccC
Confidence            99999986543

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=97.65  E-value=2.9e-05  Score=82.30  Aligned_cols=37  Identities=24%  Similarity=0.428  Sum_probs=34.3

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP   42 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~   42 (426)
                      .+||+||||||||+++|..|++.|++|+|||+.+.++
T Consensus       128 ~~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~~G  164 (965)
T 2gag_A          128 HTDVLVVGAGPAGLAAAREASRSGARVMLLDERAEAG  164 (965)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCC
Confidence            4799999999999999999999999999999987753

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=97.65  E-value=0.00019  Score=69.82  Aligned_cols=101  Identities=19%  Similarity=0.150  Sum_probs=70.4

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ   85 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   85 (426)
                      ..+|+|||||+.|+-+|..|++.|.+|+++++.+.+..     . . +.+                              
T Consensus       172 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-----~-~-~d~------------------------------  214 (466)
T 3l8k_A          172 PQDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRALI-----T-L-EDQ------------------------------  214 (466)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT-----T-S-CCH------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcCCC-----C-C-CCH------------------------------
Confidence            35799999999999999999999999999999876421     0 0 010                              


Q ss_pred             ccccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEecc--CCceEEEeecE
Q 014324           86 ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQ--TDEVIEIKGNL  162 (426)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~--~g~~~~~~~d~  162 (426)
                                               .+.+.+.+.++  + ++.++++.+++.+++ ..+.++   ++  +|+..++++|.
T Consensus       215 -------------------------~~~~~l~~~l~--v~i~~~~~v~~i~~~~~-~~v~v~---~~~~~G~~~~i~~D~  263 (466)
T 3l8k_A          215 -------------------------DIVNTLLSILK--LNIKFNSPVTEVKKIKD-DEYEVI---YSTKDGSKKSIFTNS  263 (466)
T ss_dssp             -------------------------HHHHHHHHHHC--CCEECSCCEEEEEEEET-TEEEEE---ECCTTSCCEEEEESC
T ss_pred             -------------------------HHHHHHHhcCE--EEEEECCEEEEEEEcCC-CcEEEE---EEecCCceEEEEcCE
Confidence                                     11111222222  6 888999999885431 355555   34  67755699999


Q ss_pred             EEeccCCchhhh
Q 014324          163 LVAADGCLSSIR  174 (426)
Q Consensus       163 vI~AdG~~S~vR  174 (426)
                      ||.|.|......
T Consensus       264 vi~a~G~~p~~~  275 (466)
T 3l8k_A          264 VVLAAGRRPVIP  275 (466)
T ss_dssp             EEECCCEEECCC
T ss_pred             EEECcCCCcccc
Confidence            999999876544

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=97.64  E-value=0.00028  Score=65.22  Aligned_cols=101  Identities=13%  Similarity=0.112  Sum_probs=69.5

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ   85 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   85 (426)
                      ..+|+|||+|.+|+-+|..|++.|.+|+++++.+.+..          .+...                           
T Consensus       152 ~~~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~~~~~----------~~~~~---------------------------  194 (335)
T 2zbw_A          152 GKRVLIVGGGDSAVDWALNLLDTARRITLIHRRPQFRA----------HEASV---------------------------  194 (335)
T ss_dssp             TCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCCS----------CHHHH---------------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEcCCccCc----------cHHHH---------------------------
Confidence            35899999999999999999999999999998765311          00000                           


Q ss_pred             ccccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEE
Q 014324           86 ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLV  164 (426)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI  164 (426)
                                              ..+.+.|.   +.++ ++.++++.+++.  ++....+++....+|+..++.+|.||
T Consensus       195 ------------------------~~l~~~l~---~~gv~v~~~~~v~~i~~--~~~~~~v~~~~~~~g~~~~i~~D~vi  245 (335)
T 2zbw_A          195 ------------------------KELMKAHE---EGRLEVLTPYELRRVEG--DERVRWAVVFHNQTQEELALEVDAVL  245 (335)
T ss_dssp             ------------------------HHHHHHHH---TTSSEEETTEEEEEEEE--SSSEEEEEEEETTTCCEEEEECSEEE
T ss_pred             ------------------------HHHHhccc---cCCeEEecCCcceeEcc--CCCeeEEEEEECCCCceEEEecCEEE
Confidence                                    11222232   2477 999999999985  23322344332337765669999999


Q ss_pred             eccCCchh
Q 014324          165 AADGCLSS  172 (426)
Q Consensus       165 ~AdG~~S~  172 (426)
                      .|.|..+.
T Consensus       246 ~a~G~~p~  253 (335)
T 2zbw_A          246 ILAGYITK  253 (335)
T ss_dssp             ECCCEEEE
T ss_pred             EeecCCCC
Confidence            99997754

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=97.63  E-value=2.9e-05  Score=76.90  Aligned_cols=37  Identities=32%  Similarity=0.396  Sum_probs=33.0

Q ss_pred             CCccEEEEcCChHHHHHHHHHHH-cCCcEEEEcccCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLR-AGWDVVVLEKAGGP   41 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~-~G~~v~v~E~~~~~   41 (426)
                      ..||+||||||+||+++|..|++ .|++|+|+|+....
T Consensus        16 ~~yD~IIVGsG~aG~v~A~rLse~~~~~VLvLEaG~~~   53 (526)
T 3t37_A           16 PNCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEEP   53 (526)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSBCC
T ss_pred             CCeeEEEECccHHHHHHHHHHHhCCCCeEEEEcCCCCC
Confidence            46999999999999999999997 67999999998753

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=97.62  E-value=0.00045  Score=63.24  Aligned_cols=98  Identities=15%  Similarity=0.152  Sum_probs=70.0

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ   85 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   85 (426)
                      ..+|+|||+|++|+-+|..|++.|.+|+++++.+.+..          .+                              
T Consensus       154 ~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~~~~~~~~----------~~------------------------------  193 (323)
T 3f8d_A          154 NRVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTFKA----------QP------------------------------  193 (323)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHSSEEEEECSSSSCCS----------CH------------------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCCeEEEEEeCCCCCc----------CH------------------------------
Confidence            45799999999999999999999999999998875321          00                              


Q ss_pred             ccccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEE
Q 014324           86 ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLV  164 (426)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI  164 (426)
                                              ..+++ +.+  ..++ ++.++++.++..+  +....+++.+..+|+..++.+|.||
T Consensus       194 ------------------------~~~~~-~~~--~~gv~~~~~~~v~~i~~~--~~~~~v~~~~~~~g~~~~~~~D~vv  244 (323)
T 3f8d_A          194 ------------------------IYVET-VKK--KPNVEFVLNSVVKEIKGD--KVVKQVVVENLKTGEIKELNVNGVF  244 (323)
T ss_dssp             ------------------------HHHHH-HHT--CTTEEEECSEEEEEEEES--SSEEEEEEEETTTCCEEEEECSEEE
T ss_pred             ------------------------HHHHH-HHh--CCCcEEEeCCEEEEEecc--CceeEEEEEECCCCceEEEEcCEEE
Confidence                                    00011 111  2478 8999999999853  3334455444456876679999999


Q ss_pred             eccCCchh
Q 014324          165 AADGCLSS  172 (426)
Q Consensus       165 ~AdG~~S~  172 (426)
                      .|.|....
T Consensus       245 ~a~G~~p~  252 (323)
T 3f8d_A          245 IEIGFDPP  252 (323)
T ss_dssp             ECCCEECC
T ss_pred             EEECCCCC
Confidence            99997643

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=97.61  E-value=0.00025  Score=69.47  Aligned_cols=36  Identities=25%  Similarity=0.415  Sum_probs=33.2

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP   41 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   41 (426)
                      ..+|+|||||++|+-+|..|++.|.+|+|+|+.+.+
T Consensus       194 ~~~vvVIGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~  229 (490)
T 2bc0_A          194 IKRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDTC  229 (490)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCeEEEEEcccch
Confidence            468999999999999999999999999999998764

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=97.61  E-value=0.00018  Score=69.64  Aligned_cols=99  Identities=14%  Similarity=0.136  Sum_probs=68.1

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ   85 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   85 (426)
                      ..+|+|||||+.|+-+|..|++.|.+|+++|+.+.+..     ..  +.+..                            
T Consensus       149 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-----~~--~~~~~----------------------------  193 (452)
T 2cdu_A          149 AKTITIIGSGYIGAELAEAYSNQNYNVNLIDGHERVLY-----KY--FDKEF----------------------------  193 (452)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSTTT-----TT--SCHHH----------------------------
T ss_pred             CCeEEEECcCHHHHHHHHHHHhcCCEEEEEEcCCchhh-----hh--hhhhH----------------------------
Confidence            35799999999999999999999999999999876421     00  00000                            


Q ss_pred             ccccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEE-EEEEeccCCceEEEeecEE
Q 014324           86 ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVT-VKAKVLQTDEVIEIKGNLL  163 (426)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~-v~~~~~~~g~~~~~~~d~v  163 (426)
                                             ...+.+.|.   +.|+ ++.++++.+++.. + ..+. ++   . +|++  +++|.|
T Consensus       194 -----------------------~~~l~~~l~---~~Gv~i~~~~~v~~i~~~-~-~~v~~v~---~-~g~~--i~~D~v  239 (452)
T 2cdu_A          194 -----------------------TDILAKDYE---AHGVNLVLGSKVAAFEEV-D-DEIITKT---L-DGKE--IKSDIA  239 (452)
T ss_dssp             -----------------------HHHHHHHHH---HTTCEEEESSCEEEEEEE-T-TEEEEEE---T-TSCE--EEESEE
T ss_pred             -----------------------HHHHHHHHH---HCCCEEEcCCeeEEEEcC-C-CeEEEEE---e-CCCE--EECCEE
Confidence                                   011222232   2478 9999999999842 2 2443 33   3 5654  899999


Q ss_pred             EeccCCchhh
Q 014324          164 VAADGCLSSI  173 (426)
Q Consensus       164 I~AdG~~S~v  173 (426)
                      |.|.|....+
T Consensus       240 v~a~G~~p~~  249 (452)
T 2cdu_A          240 ILCIGFRPNT  249 (452)
T ss_dssp             EECCCEEECC
T ss_pred             EECcCCCCCH
Confidence            9999987654

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=97.59  E-value=0.00014  Score=70.72  Aligned_cols=98  Identities=18%  Similarity=0.212  Sum_probs=68.3

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ   85 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   85 (426)
                      ..+|+|||||+.|+-+|..|++.|.+|+++|+.+.+..         +.+..                            
T Consensus       176 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~---------~~~~~----------------------------  218 (467)
T 1zk7_A          176 PERLAVIGSSVVALELAQAFARLGSKVTVLARNTLFFR---------EDPAI----------------------------  218 (467)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTT---------SCHHH----------------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEEECCccCC---------CCHHH----------------------------
Confidence            35899999999999999999999999999999875321         11000                            


Q ss_pred             ccccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEE
Q 014324           86 ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLV  164 (426)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI  164 (426)
                                             ...+.+.|.   +.|+ ++.++++.+++.++  ..+.++   ++ +.  ++++|.||
T Consensus       219 -----------------------~~~l~~~l~---~~Gv~i~~~~~v~~i~~~~--~~~~v~---~~-~~--~i~aD~Vv  264 (467)
T 1zk7_A          219 -----------------------GEAVTAAFR---AEGIEVLEHTQASQVAHMD--GEFVLT---TT-HG--ELRADKLL  264 (467)
T ss_dssp             -----------------------HHHHHHHHH---HTTCEEETTCCEEEEEEET--TEEEEE---ET-TE--EEEESEEE
T ss_pred             -----------------------HHHHHHHHH---hCCCEEEcCCEEEEEEEeC--CEEEEE---EC-Cc--EEEcCEEE
Confidence                                   012222232   2477 89999999998532  344444   33 33  48999999


Q ss_pred             eccCCchhhh
Q 014324          165 AADGCLSSIR  174 (426)
Q Consensus       165 ~AdG~~S~vR  174 (426)
                      .|.|..+.+.
T Consensus       265 ~a~G~~p~~~  274 (467)
T 1zk7_A          265 VATGRTPNTR  274 (467)
T ss_dssp             ECSCEEESCT
T ss_pred             ECCCCCcCCC
Confidence            9999987643

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=97.57  E-value=0.00027  Score=69.25  Aligned_cols=98  Identities=22%  Similarity=0.232  Sum_probs=66.8

Q ss_pred             CccEEEEcCChHHHHHHHHHHH----cCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceee
Q 014324            6 KGKAVIVGGSIAGISCAHALLR----AGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTI   81 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~----~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~   81 (426)
                      ..+|+|||||+.|+-+|..|++    .|.+|+++++.+.+..     ..  +.+                          
T Consensus       180 ~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~~~-----~~--l~~--------------------------  226 (493)
T 1m6i_A          180 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMG-----KI--LPE--------------------------  226 (493)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTT-----TT--SCH--------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCccccc-----cc--CCH--------------------------
Confidence            3579999999999999999886    4789999987654210     00  000                          


Q ss_pred             ccccccccccccccccccCCCcchhccHHHHHHHHHhcC-CCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEe
Q 014324           82 DQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNAL-PPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIK  159 (426)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~-~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~  159 (426)
                                                   .+.+.+.+.+ +.|+ ++.+++|.+++.++  ..+.++   +.+|++  +.
T Consensus       227 -----------------------------~~~~~~~~~l~~~GV~v~~~~~V~~i~~~~--~~~~v~---l~dG~~--i~  270 (493)
T 1m6i_A          227 -----------------------------YLSNWTMEKVRREGVKVMPNAIVQSVGVSS--GKLLIK---LKDGRK--VE  270 (493)
T ss_dssp             -----------------------------HHHHHHHHHHHTTTCEEECSCCEEEEEEET--TEEEEE---ETTSCE--EE
T ss_pred             -----------------------------HHHHHHHHHHHhcCCEEEeCCEEEEEEecC--CeEEEE---ECCCCE--EE
Confidence                                         0111122222 2478 99999999997533  345555   567864  89


Q ss_pred             ecEEEeccCCchh
Q 014324          160 GNLLVAADGCLSS  172 (426)
Q Consensus       160 ~d~vI~AdG~~S~  172 (426)
                      ||.||.|.|..+.
T Consensus       271 aD~Vv~a~G~~pn  283 (493)
T 1m6i_A          271 TDHIVAAVGLEPN  283 (493)
T ss_dssp             ESEEEECCCEEEC
T ss_pred             CCEEEECCCCCcc
Confidence            9999999998754

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=97.57  E-value=2.6e-05  Score=77.18  Aligned_cols=36  Identities=36%  Similarity=0.500  Sum_probs=33.3

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP   41 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   41 (426)
                      ..+|+||||||+||+++|..|++ |.+|+|+|+....
T Consensus        25 ~~yD~IIVGsG~AG~v~A~rLse-g~~VlvLEaG~~~   60 (536)
T 1ju2_A           25 GSYDYVIVGGGTSGCPLAATLSE-KYKVLVLERGSLP   60 (536)
T ss_dssp             EEEEEEEECCSTTHHHHHHHHTT-TSCEEEECSSBCG
T ss_pred             CcccEEEECccHHHHHHHHHHhc-CCcEEEEecCCCc
Confidence            45899999999999999999999 9999999999764

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=97.56  E-value=0.00011  Score=68.94  Aligned_cols=100  Identities=14%  Similarity=0.123  Sum_probs=67.9

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccccc
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQA   86 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   86 (426)
                      .+|+|||+|++|+-+|..|++.|.+|+++++.+.+..     .     +.   ..                         
T Consensus       164 ~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~-----~-----~~---~~-------------------------  205 (360)
T 3ab1_A          164 KRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEFQG-----H-----GK---TA-------------------------  205 (360)
T ss_dssp             CEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCSS-----C-----SH---HH-------------------------
T ss_pred             CcEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCCCCC-----C-----HH---HH-------------------------
Confidence            5799999999999999999999999999998765311     0     00   00                         


Q ss_pred             cccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEe
Q 014324           87 TDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVA  165 (426)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~  165 (426)
                                             ..+.+.+.   +.++ +++++++.++..++ +....|++. ..+|+..++.+|.||.
T Consensus       206 -----------------------~~l~~~~~---~~gv~i~~~~~v~~i~~~~-~~v~~v~~~-~~~g~~~~i~~D~vi~  257 (360)
T 3ab1_A          206 -----------------------HEVERARA---NGTIDVYLETEVASIEESN-GVLTRVHLR-SSDGSKWTVEADRLLI  257 (360)
T ss_dssp             -----------------------HSSHHHHH---HTSEEEESSEEEEEEEEET-TEEEEEEEE-ETTCCEEEEECSEEEE
T ss_pred             -----------------------HHHHHHhh---cCceEEEcCcCHHHhccCC-CceEEEEEE-ecCCCeEEEeCCEEEE
Confidence                                   00111121   2467 89999999998542 221234432 3577656699999999


Q ss_pred             ccCCchh
Q 014324          166 ADGCLSS  172 (426)
Q Consensus       166 AdG~~S~  172 (426)
                      |.|....
T Consensus       258 a~G~~p~  264 (360)
T 3ab1_A          258 LIGFKSN  264 (360)
T ss_dssp             CCCBCCS
T ss_pred             CCCCCCC
Confidence            9996643

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=97.55  E-value=3.4e-05  Score=77.99  Aligned_cols=36  Identities=31%  Similarity=0.350  Sum_probs=33.6

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcC--------CcEEEEcccC-CC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAG--------WDVVVLEKAG-GP   41 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G--------~~v~v~E~~~-~~   41 (426)
                      ..+|+|||||++||++|+.|+++|        ++|+|||+++ .+
T Consensus        56 ~~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E~~~~r~  100 (721)
T 3ayj_A           56 NYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSF  100 (721)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCTTBG
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEEeccCccc
Confidence            468999999999999999999999        9999999998 66

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=97.54  E-value=0.00028  Score=69.61  Aligned_cols=100  Identities=18%  Similarity=0.228  Sum_probs=69.4

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ   85 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   85 (426)
                      +.+++|||||+.|+-+|..+++.|.+|+|+++....+.         ..+...                           
T Consensus       223 P~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~~~L~~---------~D~ei~---------------------------  266 (542)
T 4b1b_A          223 PGKTLVVGASYVALECSGFLNSLGYDVTVAVRSIVLRG---------FDQQCA---------------------------  266 (542)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHHTCCEEEEESSCSSTT---------SCHHHH---------------------------
T ss_pred             CceEEEECCCHHHHHHHHHHHhcCCeEEEecccccccc---------cchhHH---------------------------
Confidence            35899999999999999999999999999987433210         000000                           


Q ss_pred             ccccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEE
Q 014324           86 ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLV  164 (426)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI  164 (426)
                                              ..+++.|.   ..|+ ++.++.+..++..+  ..+.++   ..++..  +.+|.|+
T Consensus       267 ------------------------~~l~~~l~---~~gi~~~~~~~v~~~~~~~--~~~~v~---~~~~~~--~~~D~vL  312 (542)
T 4b1b_A          267 ------------------------VKVKLYME---EQGVMFKNGILPKKLTKMD--DKILVE---FSDKTS--ELYDTVL  312 (542)
T ss_dssp             ------------------------HHHHHHHH---HTTCEEEETCCEEEEEEET--TEEEEE---ETTSCE--EEESEEE
T ss_pred             ------------------------HHHHHHHH---hhcceeecceEEEEEEecC--CeEEEE---EcCCCe--EEEEEEE
Confidence                                    12222232   2477 88999999988644  356665   556655  6899999


Q ss_pred             eccCCchhhhh
Q 014324          165 AADGCLSSIRQ  175 (426)
Q Consensus       165 ~AdG~~S~vR~  175 (426)
                      .|.|....+-.
T Consensus       313 vAvGR~Pnt~~  323 (542)
T 4b1b_A          313 YAIGRKGDIDG  323 (542)
T ss_dssp             ECSCEEESCGG
T ss_pred             EcccccCCccc
Confidence            99998876654

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=97.53  E-value=6.6e-05  Score=73.78  Aligned_cols=38  Identities=24%  Similarity=0.138  Sum_probs=34.4

Q ss_pred             CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324            4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP   41 (426)
Q Consensus         4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   41 (426)
                      +..+||+|||+|++|+++|..|++.|++|+|+|+....
T Consensus         3 ~~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~~   40 (504)
T 1n4w_A            3 GGYVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLW   40 (504)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCC
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence            35689999999999999999999999999999998753

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=97.52  E-value=0.00056  Score=63.23  Aligned_cols=98  Identities=16%  Similarity=0.135  Sum_probs=66.7

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ   85 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   85 (426)
                      ..+|+|||+|++|+-+|..|++.|.+|+++++.+.+..                         .+               
T Consensus       155 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~~~~~-------------------------~~---------------  194 (335)
T 2a87_A          155 DQDIAVIGGGDSAMEEATFLTRFARSVTLVHRRDEFRA-------------------------SK---------------  194 (335)
T ss_dssp             TCEEEEECSSHHHHHHHHHHTTTCSEEEEECSSSSCSS-------------------------CT---------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCCcCCc-------------------------cH---------------
Confidence            35899999999999999999999999999998764210                         00               


Q ss_pred             ccccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEE
Q 014324           86 ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLV  164 (426)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI  164 (426)
                                              ...++.+.   +.++ ++.++++.++..++....+.+  .+..+|+..++.+|.||
T Consensus       195 ------------------------~~~~~~~~---~~gV~v~~~~~v~~i~~~~~~~~v~~--~~~~~g~~~~i~~D~vi  245 (335)
T 2a87_A          195 ------------------------IMLDRARN---NDKIRFLTNHTVVAVDGDTTVTGLRV--RDTNTGAETTLPVTGVF  245 (335)
T ss_dssp             ------------------------THHHHHHH---CTTEEEECSEEEEEEECSSSCCEEEE--EEETTSCCEEECCSCEE
T ss_pred             ------------------------HHHHHHhc---cCCcEEEeCceeEEEecCCcEeEEEE--EEcCCCceEEeecCEEE
Confidence                                    00011111   3578 889999999874321122433  22346665568999999


Q ss_pred             eccCCchh
Q 014324          165 AADGCLSS  172 (426)
Q Consensus       165 ~AdG~~S~  172 (426)
                      .|.|....
T Consensus       246 ~a~G~~p~  253 (335)
T 2a87_A          246 VAIGHEPR  253 (335)
T ss_dssp             ECSCEEEC
T ss_pred             EccCCccC
Confidence            99997643

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=97.51  E-value=6.9e-05  Score=74.97  Aligned_cols=38  Identities=26%  Similarity=0.359  Sum_probs=34.9

Q ss_pred             CCCccEEEEcCChHHHHHHHHHHH-cCCcEEEEcccCCC
Q 014324            4 KEKGKAVIVGGSIAGISCAHALLR-AGWDVVVLEKAGGP   41 (426)
Q Consensus         4 ~~~~~V~IvGaG~aGl~~A~~L~~-~G~~v~v~E~~~~~   41 (426)
                      +..+|++|||+|++|+++|..|++ .|.+|+|+|+....
T Consensus        22 ~~~~d~iivG~G~~g~~~a~~l~~~~~~~v~~~e~g~~~   60 (587)
T 1gpe_A           22 GKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYE   60 (587)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCC
T ss_pred             cccCCEEEECcCHHHHHHHHHHHhCCCCcEEEEecCCcc
Confidence            456899999999999999999999 79999999999765

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=97.50  E-value=5.8e-05  Score=75.12  Aligned_cols=36  Identities=33%  Similarity=0.374  Sum_probs=33.7

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcC-CcEEEEcccCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAG-WDVVVLEKAGG   40 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G-~~v~v~E~~~~   40 (426)
                      ..||+||||||.||+++|..|++.| .+|+|+|+...
T Consensus         5 ~~yDyIVVGgG~AG~v~A~rLse~~~~~VLllEaG~~   41 (577)
T 3q9t_A            5 SHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIG   41 (577)
T ss_dssp             CEEEEEEESCSHHHHHHHHHHTTSTTSCEEEECSSCS
T ss_pred             CcccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence            5699999999999999999999998 79999999887

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=97.49  E-value=0.00026  Score=70.98  Aligned_cols=97  Identities=20%  Similarity=0.268  Sum_probs=67.9

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ   85 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   85 (426)
                      ..+|+|||||++|+-+|..|++.|.+|+++++.+.+..     .   +.+..                            
T Consensus       187 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-----~---~~~~~----------------------------  230 (588)
T 3ics_A          187 PRHATVIGGGFIGVEMVENLRERGIEVTLVEMANQVMP-----P---IDYEM----------------------------  230 (588)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT-----T---SCHHH----------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCcccc-----c---CCHHH----------------------------
Confidence            35899999999999999999999999999998776421     0   11000                            


Q ss_pred             ccccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEE
Q 014324           86 ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLV  164 (426)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI  164 (426)
                                             ...+.+.|.   +.|+ ++.++++.+++.  ++..|+     +.+|+.  +.+|.||
T Consensus       231 -----------------------~~~l~~~l~---~~GV~i~~~~~v~~i~~--~~~~v~-----~~~g~~--i~~D~Vi  275 (588)
T 3ics_A          231 -----------------------AAYVHEHMK---NHDVELVFEDGVDALEE--NGAVVR-----LKSGSV--IQTDMLI  275 (588)
T ss_dssp             -----------------------HHHHHHHHH---HTTCEEECSCCEEEEEG--GGTEEE-----ETTSCE--EECSEEE
T ss_pred             -----------------------HHHHHHHHH---HcCCEEEECCeEEEEec--CCCEEE-----ECCCCE--EEcCEEE
Confidence                                   012222232   2477 889999999873  333443     467764  8999999


Q ss_pred             eccCCchhh
Q 014324          165 AADGCLSSI  173 (426)
Q Consensus       165 ~AdG~~S~v  173 (426)
                      .|.|..+..
T Consensus       276 ~a~G~~p~~  284 (588)
T 3ics_A          276 LAIGVQPES  284 (588)
T ss_dssp             ECSCEEECC
T ss_pred             EccCCCCCh
Confidence            999986543

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=97.49  E-value=0.00079  Score=61.37  Aligned_cols=97  Identities=10%  Similarity=0.101  Sum_probs=68.7

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ   85 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   85 (426)
                      ..+|+|||+|+.|+-+|..|++.|.+|+++++.+.+..          .+                              
T Consensus       147 ~~~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~~~~~----------~~------------------------------  186 (315)
T 3r9u_A          147 NKEVAVLGGGDTALEEALYLANICSKIYLIHRRDEFRA----------AP------------------------------  186 (315)
T ss_dssp             TSEEEEECCBHHHHHHHHHHHTTSSEEEEECSSSSCBS----------CH------------------------------
T ss_pred             cCEEEEECCCHHHHHHHHHHHhhCCEEEEEEeCCCCCC----------CH------------------------------
Confidence            35799999999999999999999999999998765310          00                              


Q ss_pred             ccccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEE
Q 014324           86 ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLV  164 (426)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI  164 (426)
                                              ..+++.+.   +.|+ +++++++.++..+++ ....+++. ..+|+..++.+|.||
T Consensus       187 ------------------------~~~~~~~~---~~gv~~~~~~~v~~i~~~~~-~~~~v~~~-~~~g~~~~~~~D~vv  237 (315)
T 3r9u_A          187 ------------------------STVEKVKK---NEKIELITSASVDEVYGDKM-GVAGVKVK-LKDGSIRDLNVPGIF  237 (315)
T ss_dssp             ------------------------HHHHHHHH---CTTEEEECSCEEEEEEEETT-EEEEEEEE-CTTSCEEEECCSCEE
T ss_pred             ------------------------HHHHHHHh---cCCeEEEeCcEEEEEEcCCC-cEEEEEEE-cCCCCeEEeecCeEE
Confidence                                    11112221   3578 899999999985432 22224432 457876679999999


Q ss_pred             eccCCch
Q 014324          165 AADGCLS  171 (426)
Q Consensus       165 ~AdG~~S  171 (426)
                      .|.|...
T Consensus       238 ~a~G~~p  244 (315)
T 3r9u_A          238 TFVGLNV  244 (315)
T ss_dssp             ECSCEEE
T ss_pred             EEEcCCC
Confidence            9999753

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=97.47  E-value=9.7e-05  Score=72.63  Aligned_cols=37  Identities=22%  Similarity=0.356  Sum_probs=34.2

Q ss_pred             CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      +.++|++|||+|++|+++|..|++.|.+|+|+|+...
T Consensus         9 ~~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~   45 (507)
T 1coy_A            9 GDRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGRS   45 (507)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCC
Confidence            3568999999999999999999999999999999864

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=97.44  E-value=0.00094  Score=67.08  Aligned_cols=32  Identities=34%  Similarity=0.636  Sum_probs=30.4

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEccc
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKA   38 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~   38 (426)
                      .+|+|||||++|+-+|..|++.|.+|+|+++.
T Consensus       287 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~  318 (598)
T 2x8g_A          287 GKTLVIGASYVALECAGFLASLGGDVTVMVRS  318 (598)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCEEEEEECC
Confidence            47999999999999999999999999999987

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=97.42  E-value=0.00053  Score=64.20  Aligned_cols=35  Identities=29%  Similarity=0.559  Sum_probs=29.8

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP   41 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   41 (426)
                      .+|+|||+|++|+-+|..|++.|.+|+++++.+.+
T Consensus       167 ~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~~  201 (369)
T 3d1c_A          167 GQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGL  201 (369)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECC----
T ss_pred             CEEEEECCCcCHHHHHHHHHhcCCeEEEEecCCCC
Confidence            47999999999999999999999999999998753

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=97.39  E-value=0.00077  Score=65.15  Aligned_cols=35  Identities=29%  Similarity=0.464  Sum_probs=32.7

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP   41 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   41 (426)
                      .+|+|||||+.|+-+|..|++.|.+|+++|+.+.+
T Consensus       149 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  183 (449)
T 3kd9_A          149 ENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERV  183 (449)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCcc
Confidence            58999999999999999999999999999998764

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=97.37  E-value=0.0012  Score=65.09  Aligned_cols=98  Identities=14%  Similarity=0.110  Sum_probs=68.2

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ   85 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   85 (426)
                      ..+|+|||||++|+-+|..|++.|.+|+++++.+.+..                         .                
T Consensus       355 ~k~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~~l~~-------------------------~----------------  393 (521)
T 1hyu_A          355 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA-------------------------D----------------  393 (521)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHHBSEEEEECSSSSCCS-------------------------C----------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhCCEEEEEEeCcccCc-------------------------C----------------
Confidence            35899999999999999999999999999998765210                         0                


Q ss_pred             ccccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEE
Q 014324           86 ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLV  164 (426)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI  164 (426)
                                              ..+.+.|.+  ..++ ++.+++++++..++ +....+++.+..+|+..++.+|.||
T Consensus       394 ------------------------~~l~~~l~~--~~gV~v~~~~~v~~i~~~~-~~v~~v~~~~~~~g~~~~i~~D~vi  446 (521)
T 1hyu_A          394 ------------------------QVLQDKVRS--LKNVDIILNAQTTEVKGDG-SKVVGLEYRDRVSGDIHSVALAGIF  446 (521)
T ss_dssp             ------------------------HHHHHHHTT--CTTEEEECSEEEEEEEECS-SSEEEEEEEETTTCCEEEEECSEEE
T ss_pred             ------------------------HHHHHHHhc--CCCcEEEeCCEEEEEEcCC-CcEEEEEEEeCCCCceEEEEcCEEE
Confidence                                    001111211  1477 89999999987432 2222355444456776679999999


Q ss_pred             eccCCch
Q 014324          165 AADGCLS  171 (426)
Q Consensus       165 ~AdG~~S  171 (426)
                      .|.|...
T Consensus       447 ~a~G~~p  453 (521)
T 1hyu_A          447 VQIGLLP  453 (521)
T ss_dssp             ECCCEEE
T ss_pred             ECcCCCC
Confidence            9999654

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=97.35  E-value=0.00048  Score=66.35  Aligned_cols=94  Identities=13%  Similarity=0.220  Sum_probs=66.4

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ   85 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   85 (426)
                      ..+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+...      .  .+.                             
T Consensus       147 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ll~~------~--d~~-----------------------------  189 (437)
T 4eqs_A          147 VDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKL------M--DAD-----------------------------  189 (437)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSCCSTT------S--CGG-----------------------------
T ss_pred             CcEEEEECCccchhhhHHHHHhcCCcceeeeeecccccc------c--cch-----------------------------
Confidence            357999999999999999999999999999998764210      0  000                             


Q ss_pred             ccccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEE
Q 014324           86 ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLV  164 (426)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI  164 (426)
                                .            ...+.+.|.+   .|+ ++.++++.+++  .  ..++     +++|+.  +++|.||
T Consensus       190 ----------~------------~~~~~~~l~~---~gV~i~~~~~v~~~~--~--~~v~-----~~~g~~--~~~D~vl  233 (437)
T 4eqs_A          190 ----------M------------NQPILDELDK---REIPYRLNEEINAIN--G--NEIT-----FKSGKV--EHYDMII  233 (437)
T ss_dssp             ----------G------------GHHHHHHHHH---TTCCEEESCCEEEEE--T--TEEE-----ETTSCE--EECSEEE
T ss_pred             ----------h------------HHHHHHHhhc---cceEEEeccEEEEec--C--Ceee-----ecCCeE--EeeeeEE
Confidence                      0            0222233332   467 88999988775  2  2343     567876  8999999


Q ss_pred             eccCCchh
Q 014324          165 AADGCLSS  172 (426)
Q Consensus       165 ~AdG~~S~  172 (426)
                      .|.|....
T Consensus       234 ~a~G~~Pn  241 (437)
T 4eqs_A          234 EGVGTHPN  241 (437)
T ss_dssp             ECCCEEES
T ss_pred             EEeceecC
Confidence            99997654

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=97.35  E-value=0.00011  Score=73.12  Aligned_cols=35  Identities=26%  Similarity=0.468  Sum_probs=32.5

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHc-CCcEEEEcccC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRA-GWDVVVLEKAG   39 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~-G~~v~v~E~~~   39 (426)
                      ..||+||||||.||+++|..|++. +.+|+|+|+..
T Consensus        18 ~~yDyIIVGgG~AG~vlA~RLse~~~~~VLlLEaG~   53 (583)
T 3qvp_A           18 RTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGS   53 (583)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTCCEEEECSSC
T ss_pred             CCccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCC
Confidence            468999999999999999999975 79999999998

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=97.32  E-value=0.00014  Score=72.23  Aligned_cols=37  Identities=24%  Similarity=0.320  Sum_probs=34.1

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHc-CCcEEEEcccCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRA-GWDVVVLEKAGGP   41 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~-G~~v~v~E~~~~~   41 (426)
                      ..+||+|||+|++|+++|..|++. |.+|+|+|+....
T Consensus        12 ~~~d~~ivG~G~~G~~~a~~l~~~~~~~v~~~e~g~~~   49 (546)
T 2jbv_A           12 REFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDD   49 (546)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSCCC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCCCEEEEecCCcC
Confidence            468999999999999999999998 8999999999754

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=97.30  E-value=0.00055  Score=62.96  Aligned_cols=96  Identities=14%  Similarity=0.140  Sum_probs=68.3

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ   85 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   85 (426)
                      ..+|+|||+|++|+-+|..|++.|.+|+++++.+.+..       .                 ...              
T Consensus       154 ~~~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~~~~~-------~-----------------~~~--------------  195 (332)
T 3lzw_A          154 GRRVAILGGGDSAVDWALMLEPIAKEVSIIHRRDKFRA-------H-----------------EHS--------------  195 (332)
T ss_dssp             TCEEEEECSSHHHHHHHHHHTTTBSEEEEECSSSSCSS-------C-----------------HHH--------------
T ss_pred             CCEEEEECCCHhHHHHHHHHHhhCCeEEEEEecCcCCc-------c-----------------HHH--------------
Confidence            35799999999999999999999999999998765310       0                 000              


Q ss_pred             ccccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEE
Q 014324           86 ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLV  164 (426)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI  164 (426)
                                                +.+ |.   +.++ ++.++++.++..++  ..+.+++.+..+|+..++.+|.||
T Consensus       196 --------------------------~~~-l~---~~gv~~~~~~~v~~i~~~~--~~~~v~~~~~~~g~~~~~~~D~vv  243 (332)
T 3lzw_A          196 --------------------------VEN-LH---ASKVNVLTPFVPAELIGED--KIEQLVLEEVKGDRKEILEIDDLI  243 (332)
T ss_dssp             --------------------------HHH-HH---HSSCEEETTEEEEEEECSS--SCCEEEEEETTSCCEEEEECSEEE
T ss_pred             --------------------------HHH-Hh---cCCeEEEeCceeeEEecCC--ceEEEEEEecCCCceEEEECCEEE
Confidence                                      000 21   2477 88899999988432  244455544456666679999999


Q ss_pred             eccCCch
Q 014324          165 AADGCLS  171 (426)
Q Consensus       165 ~AdG~~S  171 (426)
                      .|.|...
T Consensus       244 ~a~G~~p  250 (332)
T 3lzw_A          244 VNYGFVS  250 (332)
T ss_dssp             ECCCEEC
T ss_pred             EeeccCC
Confidence            9999654

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=97.26  E-value=0.0011  Score=64.31  Aligned_cols=99  Identities=16%  Similarity=0.188  Sum_probs=68.5

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ   85 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   85 (426)
                      ..+|+|||+|+.|+-+|..|++.|.+|+++++.+.+..      .  +.                               
T Consensus       170 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~~~l~------~--~~-------------------------------  210 (463)
T 4dna_A          170 PESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEILS------R--FD-------------------------------  210 (463)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST------T--SC-------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcccc------c--cC-------------------------------
Confidence            45899999999999999999999999999999875321      0  00                               


Q ss_pred             ccccccccccccccCCCcchhccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEE
Q 014324           86 ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLL  163 (426)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~v  163 (426)
                                              ..+.+.+.+.++ .|+ ++.++++.+++.++++ .+.|+.  +++|+   +.+|.|
T Consensus       211 ------------------------~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~~~v~~--~~~g~---i~aD~V  260 (463)
T 4dna_A          211 ------------------------QDMRRGLHAAMEEKGIRILCEDIIQSVSADADG-RRVATT--MKHGE---IVADQV  260 (463)
T ss_dssp             ------------------------HHHHHHHHHHHHHTTCEEECSCCEEEEEECTTS-CEEEEE--SSSCE---EEESEE
T ss_pred             ------------------------HHHHHHHHHHHHHCCCEEECCCEEEEEEEcCCC-EEEEEE--cCCCe---EEeCEE
Confidence                                    011112222222 477 9999999999864332 244431  34564   799999


Q ss_pred             EeccCCchhh
Q 014324          164 VAADGCLSSI  173 (426)
Q Consensus       164 I~AdG~~S~v  173 (426)
                      |.|.|..+..
T Consensus       261 v~a~G~~p~~  270 (463)
T 4dna_A          261 MLALGRMPNT  270 (463)
T ss_dssp             EECSCEEESC
T ss_pred             EEeeCcccCC
Confidence            9999987654

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=97.26  E-value=0.00011  Score=73.05  Aligned_cols=36  Identities=31%  Similarity=0.266  Sum_probs=33.2

Q ss_pred             CccEEEEcCChHHHHHHHHHHH-cCCcEEEEcccCCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLR-AGWDVVVLEKAGGP   41 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~-~G~~v~v~E~~~~~   41 (426)
                      .||+||||||+||+++|..|++ .|.+|+|+|+....
T Consensus         2 ~yD~IIVG~G~aG~v~A~rLse~~~~~VlllEaG~~~   38 (566)
T 3fim_B            2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSD   38 (566)
T ss_dssp             CEEEEESCCSTTHHHHHHHHTTSTTCCEEEECSSBCC
T ss_pred             CcCEEEECCcHHHHHHHHHHHhCcCCcEEEEecCCcc
Confidence            4899999999999999999998 68999999998765

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=97.20  E-value=0.00035  Score=69.72  Aligned_cols=38  Identities=16%  Similarity=0.145  Sum_probs=36.1

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPT   43 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~   43 (426)
                      +|||+|||+|+.|..+|..|++.|.+|+++||++..+.
T Consensus         8 ~~D~~i~GtGl~~~~~a~~~~~~g~~vl~id~~~~~gg   45 (650)
T 1vg0_A            8 DFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGG   45 (650)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCG
T ss_pred             cCCEEEECCcHHHHHHHHHHHhCCCEEEEEcCCCcccC
Confidence            58999999999999999999999999999999999763

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=97.09  E-value=0.0029  Score=62.54  Aligned_cols=54  Identities=9%  Similarity=0.054  Sum_probs=40.5

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHH
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQ   62 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~   62 (426)
                      ..+|+|||+|.+|+-+|..|++.|.+|+|+++.+..-...   ..-.+.+...+.|+
T Consensus       178 ~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~i~p~---~~~~~~~~~~~~l~  231 (540)
T 3gwf_A          178 GRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQYSVPV---GNRPVNPEQIAEIK  231 (540)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTCSEEEEEESSCCCEEEC---CCCBCCHHHHHHHH
T ss_pred             cceEEEECCCchHHHHHHHHHhhCCEEEEEECCCCccccC---ccCCCCHHHHHHHH
Confidence            4589999999999999999999999999999998731100   11235555555555

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=97.08  E-value=0.0016  Score=63.80  Aligned_cols=44  Identities=18%  Similarity=0.091  Sum_probs=30.6

Q ss_pred             CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCce--EEEeecEEEeccCCc
Q 014324          122 PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEV--IEIKGNLLVAADGCL  170 (426)
Q Consensus       122 ~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~--~~~~~d~vI~AdG~~  170 (426)
                      .|+ ++.+++|++++  ++  .+.+... .+||+.  .++.+|+||-|.|..
T Consensus       285 ~GV~v~~~~~v~~v~--~~--~~~~~~~-~~dg~~~~~~i~ad~viwa~Gv~  331 (502)
T 4g6h_A          285 TSIKVHLRTAVAKVE--EK--QLLAKTK-HEDGKITEETIPYGTLIWATGNK  331 (502)
T ss_dssp             TTCEEETTEEEEEEC--SS--EEEEEEE-CTTSCEEEEEEECSEEEECCCEE
T ss_pred             cceeeecCceEEEEe--CC--ceEEEEE-ecCcccceeeeccCEEEEccCCc
Confidence            478 99999999886  33  3332211 566653  458999999999964

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=97.05  E-value=0.00067  Score=54.05  Aligned_cols=40  Identities=23%  Similarity=0.425  Sum_probs=31.9

Q ss_pred             CCCCCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            1 MEKKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         1 m~~~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      |..+....|+|+|+|..|..+|..|.++|++|+++|+++.
T Consensus         1 m~~~~~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~   40 (141)
T 3llv_A            1 MTENGRYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKE   40 (141)
T ss_dssp             -----CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHH
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHH
Confidence            4333345899999999999999999999999999998653

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=96.93  E-value=0.0064  Score=60.15  Aligned_cols=36  Identities=8%  Similarity=0.173  Sum_probs=33.4

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP   41 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   41 (426)
                      ..+|+|||+|++|+-+|..|++.+.+|+|+++.+..
T Consensus       185 ~krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~~~  220 (545)
T 3uox_A          185 GKRVGVIGTGATGVQIIPIAAETAKELYVFQRTPNW  220 (545)
T ss_dssp             TCEEEEECCSHHHHHHHHHHTTTBSEEEEEESSCCC
T ss_pred             CCeEEEECCCccHHHHHHHHHhhCCEEEEEEcCCCc
Confidence            458999999999999999999999999999999874

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=96.92  E-value=0.0029  Score=60.98  Aligned_cols=35  Identities=17%  Similarity=0.224  Sum_probs=31.7

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCc-EEEEcccCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWD-VVVLEKAGG   40 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~-v~v~E~~~~   40 (426)
                      ..+|+|||+|.+|+-+|..|++.|.+ |+++++...
T Consensus       212 ~k~VvVvG~G~sg~e~A~~l~~~~~~~V~l~~r~~~  247 (447)
T 2gv8_A          212 GESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGG  247 (447)
T ss_dssp             TCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTCC
T ss_pred             CCEEEEEccCcCHHHHHHHHHHHhCCcEEEEeCCCC
Confidence            35799999999999999999999999 999998754

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=96.92  E-value=0.0093  Score=54.19  Aligned_cols=35  Identities=26%  Similarity=0.389  Sum_probs=32.1

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ..+|+|||||..|+-+|..|++.|.+|+|+|+...
T Consensus       152 ~~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~~  186 (314)
T 4a5l_A          152 NKVLMVVGGGDAAMEEALHLTKYGSKVIILHRRDA  186 (314)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSS
T ss_pred             CCeEEEECCChHHHHHHHHHHHhCCeeeeeccccc
Confidence            35799999999999999999999999999998665

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=96.78  E-value=0.0013  Score=53.41  Aligned_cols=36  Identities=28%  Similarity=0.251  Sum_probs=32.6

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ...+|+|+|+|..|..+|..|.+.|++|+++|+++.
T Consensus        18 ~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~   53 (155)
T 2g1u_A           18 KSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEY   53 (155)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            346899999999999999999999999999998765

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=96.77  E-value=0.0079  Score=61.37  Aligned_cols=98  Identities=15%  Similarity=0.146  Sum_probs=67.0

Q ss_pred             ccEEEEc--CChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccc
Q 014324            7 GKAVIVG--GSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQN   84 (426)
Q Consensus         7 ~~V~IvG--aG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~   84 (426)
                      .+|+|||  +|.+|+-+|..|++.|.+|+++++.+.+..     . . .               ...             
T Consensus       524 ~~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~~l~~-----~-~-~---------------~~~-------------  568 (690)
T 3k30_A          524 KKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQVSS-----W-T-N---------------NTF-------------  568 (690)
T ss_dssp             SEEEEEECSCSSHHHHHHHHHHHTTCEEEEEESSSSTTG-----G-G-G---------------GGT-------------
T ss_pred             CEEEEEcCCCCccHHHHHHHHHhCCCeeEEEeccccccc-----c-c-c---------------cch-------------
Confidence            4699999  999999999999999999999998776321     0 0 0               000             


Q ss_pred             cccccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEE
Q 014324           85 QATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLL  163 (426)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~v  163 (426)
                                             .+..+.+.|.+   .|+ ++.+++|++++  .+  .+.++.  ..+++..++.+|.|
T Consensus       569 -----------------------~~~~l~~~l~~---~GV~i~~~~~V~~i~--~~--~~~v~~--~~~~~~~~i~aD~V  616 (690)
T 3k30_A          569 -----------------------EVNRIQRRLIE---NGVARVTDHAVVAVG--AG--GVTVRD--TYASIERELECDAV  616 (690)
T ss_dssp             -----------------------CHHHHHHHHHH---TTCEEEESEEEEEEE--TT--EEEEEE--TTTCCEEEEECSEE
T ss_pred             -----------------------hHHHHHHHHHH---CCCEEEcCcEEEEEE--CC--eEEEEE--ccCCeEEEEECCEE
Confidence                                   01233333432   478 99999999987  33  233331  23455556899999


Q ss_pred             EeccCCch
Q 014324          164 VAADGCLS  171 (426)
Q Consensus       164 I~AdG~~S  171 (426)
                      |.|.|..+
T Consensus       617 V~A~G~~p  624 (690)
T 3k30_A          617 VMVTARLP  624 (690)
T ss_dssp             EEESCEEE
T ss_pred             EECCCCCC
Confidence            99999753

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=96.77  E-value=0.0079  Score=58.14  Aligned_cols=36  Identities=25%  Similarity=0.326  Sum_probs=31.5

Q ss_pred             CccEEEEcCChHHHHHHHHHH--------------------HcCC-cEEEEcccCCC
Q 014324            6 KGKAVIVGGSIAGISCAHALL--------------------RAGW-DVVVLEKAGGP   41 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~--------------------~~G~-~v~v~E~~~~~   41 (426)
                      ..+|+|||+|.+|+-+|..|+                    +.|. +|+|++++...
T Consensus       145 ~~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~~~  201 (460)
T 1cjc_A          145 CDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPL  201 (460)
T ss_dssp             SSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGG
T ss_pred             CCEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCChH
Confidence            358999999999999999999                    6788 69999998763

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=96.75  E-value=0.0019  Score=52.22  Aligned_cols=35  Identities=26%  Similarity=0.346  Sum_probs=32.1

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAG   39 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~   39 (426)
                      .+..|+|+|+|..|..+|..|.+.|++|+++|+.+
T Consensus         2 ~~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~   36 (153)
T 1id1_A            2 RKDHFIVCGHSILAINTILQLNQRGQNVTVISNLP   36 (153)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Confidence            44689999999999999999999999999999974

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=96.71  E-value=0.0015  Score=51.84  Aligned_cols=39  Identities=21%  Similarity=0.288  Sum_probs=31.1

Q ss_pred             CCCCCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccC
Q 014324            1 MEKKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAG   39 (426)
Q Consensus         1 m~~~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~   39 (426)
                      |......+|+|+|+|..|..+|..|.+.|++|+++|+..
T Consensus         1 m~~~~~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~   39 (144)
T 2hmt_A            1 MGRIKNKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINE   39 (144)
T ss_dssp             -----CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred             CCCCcCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            433334579999999999999999999999999999864

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=96.63  E-value=0.002  Score=50.95  Aligned_cols=34  Identities=24%  Similarity=0.321  Sum_probs=30.8

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAG   39 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~   39 (426)
                      .++|+|+|+|..|..+|..|.+.|++|+++|+++
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~   37 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK   37 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            4689999999999999999999999999999854

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=96.60  E-value=0.0032  Score=50.03  Aligned_cols=35  Identities=26%  Similarity=0.299  Sum_probs=32.3

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      +..|+|+|+|..|..+|..|.+.|++|+++|+++.
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~   41 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRT   41 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHH
Confidence            35799999999999999999999999999999865

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=96.40  E-value=0.0031  Score=48.05  Aligned_cols=35  Identities=20%  Similarity=0.239  Sum_probs=31.5

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcC-CcEEEEcccCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAG-WDVVVLEKAGG   40 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G-~~v~v~E~~~~   40 (426)
                      ..+|+|+|+|..|..++..|.++| ++|+++++.+.
T Consensus         5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~   40 (118)
T 3ic5_A            5 RWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLA   40 (118)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHH
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHH
Confidence            358999999999999999999999 89999998653

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=96.39  E-value=0.0035  Score=57.72  Aligned_cols=39  Identities=18%  Similarity=0.256  Sum_probs=34.3

Q ss_pred             CCCCCccEEEEcCChHHHHHHHHHHHcCC-cEEEEcccCC
Q 014324            2 EKKEKGKAVIVGGSIAGISCAHALLRAGW-DVVVLEKAGG   40 (426)
Q Consensus         2 ~~~~~~~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~   40 (426)
                      |.+.+++|+|||||-.|.++|..|++.|+ +|+++|+...
T Consensus         5 ~~~~~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~~   44 (331)
T 1pzg_A            5 LVQRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKG   44 (331)
T ss_dssp             CCSCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSS
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECChh
Confidence            44455799999999999999999999998 9999999864

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=96.37  E-value=0.014  Score=52.39  Aligned_cols=33  Identities=21%  Similarity=0.224  Sum_probs=29.6

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAG   39 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~   39 (426)
                      ..+|+|||+|++|+-+|..|++.| +|+++++.+
T Consensus       141 ~~~v~vvG~G~~~~e~a~~l~~~g-~v~~v~~~~  173 (297)
T 3fbs_A          141 QGKIGVIAASPMAIHHALMLPDWG-ETTFFTNGI  173 (297)
T ss_dssp             TCEEEEECCSTTHHHHHHHGGGTS-EEEEECTTT
T ss_pred             CCEEEEEecCccHHHHHHHhhhcC-cEEEEECCC
Confidence            458999999999999999999999 999987654

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=96.35  E-value=0.0038  Score=56.19  Aligned_cols=38  Identities=16%  Similarity=0.227  Sum_probs=33.7

Q ss_pred             CCCCCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            1 MEKKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         1 m~~~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ||.+  .+|.|||+|..|...|..|+++|++|+++|+.+.
T Consensus         1 Mm~~--~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~   38 (283)
T 4e12_A            1 MTGI--TNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTD   38 (283)
T ss_dssp             CCSC--CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHH
T ss_pred             CCCC--CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            6543  5799999999999999999999999999998765

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=96.33  E-value=0.0028  Score=57.71  Aligned_cols=40  Identities=25%  Similarity=0.400  Sum_probs=32.0

Q ss_pred             CCCCCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            1 MEKKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         1 m~~~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      |......+|+|||||..|..-|..++.+|++|+++|..+.
T Consensus         1 Ma~p~~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~   40 (319)
T 3ado_A            1 MASPAAGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPR   40 (319)
T ss_dssp             ------CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHH
T ss_pred             CCCCCCCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            5554556899999999999999999999999999998765

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=96.29  E-value=0.0037  Score=60.28  Aligned_cols=37  Identities=24%  Similarity=0.191  Sum_probs=33.3

Q ss_pred             CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ....+|.|||.|.+|+++|..|+++|++|+++|++..
T Consensus         7 ~~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~   43 (451)
T 3lk7_A            7 FENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPF   43 (451)
T ss_dssp             TTTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSCG
T ss_pred             cCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCcc
Confidence            3456899999999999999999999999999998763

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=96.16  E-value=0.02  Score=55.19  Aligned_cols=36  Identities=28%  Similarity=0.515  Sum_probs=30.7

Q ss_pred             CccEEEEcCChHHHHHHHHHHHc--------------------CC-cEEEEcccCCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRA--------------------GW-DVVVLEKAGGP   41 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~--------------------G~-~v~v~E~~~~~   41 (426)
                      ..+|+|||+|.+|+-+|..|++.                    |. +|+|++++...
T Consensus       147 ~~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~~  203 (456)
T 1lqt_A          147 GARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPL  203 (456)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCChh
Confidence            35799999999999999999974                    64 89999998753

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.13  E-value=0.006  Score=50.81  Aligned_cols=35  Identities=17%  Similarity=0.147  Sum_probs=31.8

Q ss_pred             CccEEEEcCChHHHHHHHHHHHc-CCcEEEEcccCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRA-GWDVVVLEKAGG   40 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~-G~~v~v~E~~~~   40 (426)
                      ..+|+|+|+|..|..+|..|.+. |++|+++|+++.
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~   74 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIREE   74 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHH
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHH
Confidence            45799999999999999999999 999999998754

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=96.09  E-value=0.0049  Score=58.11  Aligned_cols=36  Identities=36%  Similarity=0.484  Sum_probs=33.5

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP   42 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~   42 (426)
                      .+|+|||||++|+-+|..|++.|.+|+|+|+.+.+.
T Consensus       147 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l  182 (385)
T 3klj_A          147 GKAFIIGGGILGIELAQAIIDSGTPASIGIILEYPL  182 (385)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccc
Confidence            579999999999999999999999999999998753

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=96.03  E-value=0.0066  Score=55.15  Aligned_cols=34  Identities=21%  Similarity=0.474  Sum_probs=31.5

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      .+|.|||+|..|...|..|+++|++|+++|+.+.
T Consensus        16 ~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~   49 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTED   49 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            5799999999999999999999999999998764

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=96.02  E-value=0.039  Score=53.90  Aligned_cols=36  Identities=8%  Similarity=0.132  Sum_probs=30.8

Q ss_pred             CccEEEEcCChHHHHHHHHHHHc--CCcEEEEcccCCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRA--GWDVVVLEKAGGP   41 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~--G~~v~v~E~~~~~   41 (426)
                      ..+|+|||+|-+|.-.+..|+++  +.+|+++=|.+..
T Consensus       246 gKrV~VVG~G~SA~ei~~~L~~~~~~~~v~~~~R~~~~  283 (501)
T 4b63_A          246 PYNIAVLGSGQSAAEIFHDLQKRYPNSRTTLIMRDSAM  283 (501)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHSTTCEEEEECSSSSC
T ss_pred             CcEEEEECCcHHHHHHHHHHHhcCCCceEEEEeCCCcc
Confidence            35799999999999999999876  6789999888654

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=95.95  E-value=0.0051  Score=56.04  Aligned_cols=35  Identities=11%  Similarity=0.221  Sum_probs=32.6

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP   41 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   41 (426)
                      .+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+
T Consensus       146 k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~  180 (312)
T 4gcm_A          146 KRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDEL  180 (312)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEeccccc
Confidence            58999999999999999999999999999998764

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=95.93  E-value=0.0066  Score=55.51  Aligned_cols=39  Identities=26%  Similarity=0.448  Sum_probs=32.3

Q ss_pred             CCCCCCccEEEEcCChHHHHHHHHHHHcCC--cEEEEcccC
Q 014324            1 MEKKEKGKAVIVGGSIAGISCAHALLRAGW--DVVVLEKAG   39 (426)
Q Consensus         1 m~~~~~~~V~IvGaG~aGl~~A~~L~~~G~--~v~v~E~~~   39 (426)
                      |++|..++|+|||+|-.|.++|..|+.+|+  +++++|...
T Consensus         1 m~~m~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~   41 (317)
T 3d0o_A            1 MNKFKGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDT   41 (317)
T ss_dssp             ---CCCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCH
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            666777899999999999999999999885  799998754

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=95.93  E-value=0.016  Score=61.33  Aligned_cols=34  Identities=12%  Similarity=0.155  Sum_probs=31.8

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      .+|+|||+|+.|+-+|..|++.|.+|+|+|+.+.
T Consensus       285 k~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~~  318 (965)
T 2gag_A          285 ARIAVATTNDSAYELVRELAATGGVVAVIDARSS  318 (965)
T ss_dssp             SSEEEEESSTTHHHHHHHHGGGTCCSEEEESCSS
T ss_pred             CeEEEEcCCHHHHHHHHHHHHcCCcEEEEECCCc
Confidence            5799999999999999999999999999999775

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=95.90  E-value=0.0085  Score=54.55  Aligned_cols=37  Identities=22%  Similarity=0.395  Sum_probs=33.3

Q ss_pred             CCCCccEEEEcCChHHHHHHHHHHHcCC-cEEEEcccC
Q 014324            3 KKEKGKAVIVGGSIAGISCAHALLRAGW-DVVVLEKAG   39 (426)
Q Consensus         3 ~~~~~~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~   39 (426)
                      .|...+|.|||+|..|.++|..|++.|+ +|+++|..+
T Consensus         5 ~~~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~~   42 (315)
T 3tl2_A            5 TIKRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIPQ   42 (315)
T ss_dssp             CCCCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCGG
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeccc
Confidence            3456789999999999999999999999 999999984

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=95.86  E-value=0.03  Score=51.64  Aligned_cols=33  Identities=12%  Similarity=0.234  Sum_probs=30.0

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAG   39 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~   39 (426)
                      ..+|+|||+|++|+-+|..|++.| +|+++.+..
T Consensus       163 ~~~v~VvG~G~~g~e~a~~l~~~~-~v~~v~~~~  195 (357)
T 4a9w_A          163 GMRVAIIGGGNSGAQILAEVSTVA-ETTWITQHE  195 (357)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTS-EEEEECSSC
T ss_pred             CCEEEEECCCcCHHHHHHHHHhhC-CEEEEECCC
Confidence            358999999999999999999998 799998884

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=95.84  E-value=0.0069  Score=52.07  Aligned_cols=33  Identities=27%  Similarity=0.518  Sum_probs=31.0

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            8 KAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         8 ~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      +|+|||+|..|..+|..|.++|++|+++|+++.
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~   34 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKYGVVIINKDRE   34 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTCCEEEEESCHH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            699999999999999999999999999998764

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=95.80  E-value=0.008  Score=55.96  Aligned_cols=38  Identities=18%  Similarity=0.161  Sum_probs=31.6

Q ss_pred             CCCCCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            1 MEKKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         1 m~~~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ||+  .++|+|||+|-.|...|..|++.|++|+++++.+.
T Consensus         1 mm~--~mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~~   38 (359)
T 1bg6_A            1 MIE--SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQ   38 (359)
T ss_dssp             -----CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CCC--cCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            554  36899999999999999999999999999988643

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=95.76  E-value=0.0096  Score=54.93  Aligned_cols=33  Identities=27%  Similarity=0.276  Sum_probs=30.6

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEccc
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKA   38 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~   38 (426)
                      .++|+|||+|-.|.++|..|++.|++|+++++.
T Consensus         3 ~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~   35 (335)
T 3ghy_A            3 LTRICIVGAGAVGGYLGARLALAGEAINVLARG   35 (335)
T ss_dssp             CCCEEEESCCHHHHHHHHHHHHTTCCEEEECCH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCEEEEEECh
Confidence            358999999999999999999999999999975

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=95.75  E-value=0.03  Score=57.40  Aligned_cols=33  Identities=24%  Similarity=0.297  Sum_probs=31.2

Q ss_pred             ccEEEEc--CChHHHHHHHHHHHcCCcEEEEcccC
Q 014324            7 GKAVIVG--GSIAGISCAHALLRAGWDVVVLEKAG   39 (426)
Q Consensus         7 ~~V~IvG--aG~aGl~~A~~L~~~G~~v~v~E~~~   39 (426)
                      .+|+|||  ||..|+-+|..|++.|.+|+|+++.+
T Consensus       529 k~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~  563 (729)
T 1o94_A          529 KRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH  563 (729)
T ss_dssp             SEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CeEEEEcCCCCchHHHHHHHHHHcCCEEEEEeccc
Confidence            4899999  99999999999999999999999887

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=95.72  E-value=0.0097  Score=55.30  Aligned_cols=37  Identities=24%  Similarity=0.206  Sum_probs=32.9

Q ss_pred             CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      +..++|.|||+|-.|.++|..|+++|++|+++++.+.
T Consensus        27 ~~~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~~   63 (356)
T 3k96_A           27 PFKHPIAILGAGSWGTALALVLARKGQKVRLWSYESD   63 (356)
T ss_dssp             CCCSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCHH
T ss_pred             ccCCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            3457899999999999999999999999999998643

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=95.72  E-value=0.0081  Score=54.84  Aligned_cols=39  Identities=23%  Similarity=0.177  Sum_probs=31.2

Q ss_pred             CCCCCCccEEEEcCChHHHHHHHHHHHcCC-cEEEEcccC
Q 014324            1 MEKKEKGKAVIVGGSIAGISCAHALLRAGW-DVVVLEKAG   39 (426)
Q Consensus         1 m~~~~~~~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~   39 (426)
                      ||.+..++|.|||.|-.|..+|..|++.|+ +|+++++.+
T Consensus        19 ~~~~~~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~   58 (312)
T 3qsg_A           19 YFQSNAMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAAS   58 (312)
T ss_dssp             ------CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSC
T ss_pred             cccCCCCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCC
Confidence            444455789999999999999999999999 999999864

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=95.65  E-value=0.012  Score=54.08  Aligned_cols=35  Identities=26%  Similarity=0.341  Sum_probs=32.1

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCC-cEEEEcccCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGW-DVVVLEKAGG   40 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~   40 (426)
                      +.+|+|||||-.|.++|..|++.|+ +|+++|....
T Consensus        14 ~~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~~   49 (328)
T 2hjr_A           14 RKKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIEG   49 (328)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCHH
Confidence            3589999999999999999999998 9999999764

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=95.64  E-value=0.01  Score=50.93  Aligned_cols=35  Identities=17%  Similarity=0.325  Sum_probs=31.9

Q ss_pred             CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEccc
Q 014324            4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKA   38 (426)
Q Consensus         4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~   38 (426)
                      .....|+|||||.+|...|..|.+.|.+|+|+++.
T Consensus        29 L~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~   63 (223)
T 3dfz_A           29 LKGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPT   63 (223)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSS
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC
Confidence            35678999999999999999999999999999864

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=95.51  E-value=0.0094  Score=57.24  Aligned_cols=38  Identities=29%  Similarity=0.546  Sum_probs=33.9

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP   42 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~   42 (426)
                      ...+|.|||.|++|+++|..|+++|++|+++|.+..+.
T Consensus         4 ~~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~   41 (439)
T 2x5o_A            4 QGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPP   41 (439)
T ss_dssp             TTCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSCT
T ss_pred             CCCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCcc
Confidence            34679999999999999999999999999999987653

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=95.44  E-value=0.094  Score=55.96  Aligned_cols=34  Identities=26%  Similarity=0.519  Sum_probs=31.1

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCC-cEEEEcccCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGW-DVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~   40 (426)
                      .+|+|||||..|+-+|..|.+.|. +|+|+++.+.
T Consensus       333 ~~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~~  367 (1025)
T 1gte_A          333 GAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGF  367 (1025)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCG
T ss_pred             CcEEEECCChHHHHHHHHHHHcCCCEEEEEEecCh
Confidence            389999999999999999999996 8999998763

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=95.43  E-value=0.014  Score=53.48  Aligned_cols=33  Identities=18%  Similarity=0.287  Sum_probs=30.9

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAG   39 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~   39 (426)
                      ++|+|||+|-.|.++|..|++.|.+|++++|.+
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD   35 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh
Confidence            589999999999999999999999999999864

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=95.38  E-value=0.018  Score=52.57  Aligned_cols=36  Identities=25%  Similarity=0.320  Sum_probs=32.0

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCC--cEEEEcccCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGW--DVVVLEKAGG   40 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~--~v~v~E~~~~   40 (426)
                      ...+|.|||+|..|.++|..|++.|+  +|+++|+.+.
T Consensus        32 ~~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~   69 (314)
T 3ggo_A           32 SMQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPE   69 (314)
T ss_dssp             SCSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHH
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHH
Confidence            34689999999999999999999999  8999987654

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=95.38  E-value=0.017  Score=49.23  Aligned_cols=35  Identities=20%  Similarity=0.204  Sum_probs=31.9

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      .++|.|||+|-.|.++|..|++.|++|+++++.+.
T Consensus        19 ~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~   53 (209)
T 2raf_A           19 GMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ   53 (209)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            46899999999999999999999999999998765

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=95.36  E-value=0.016  Score=52.06  Aligned_cols=33  Identities=21%  Similarity=0.220  Sum_probs=31.1

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            8 KAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         8 ~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      +|.|||+|..|.++|..|++.|++|+++++.+.
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~   34 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCCEEEEEcCcc
Confidence            699999999999999999999999999998765

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=95.32  E-value=0.018  Score=54.00  Aligned_cols=36  Identities=19%  Similarity=0.276  Sum_probs=32.9

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ...+|+|+|+|++|+.+|..|...|.+|+++|++..
T Consensus       189 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~  224 (405)
T 4dio_A          189 PAAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPA  224 (405)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTT
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            346899999999999999999999999999998875

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=95.30  E-value=0.018  Score=52.51  Aligned_cols=40  Identities=23%  Similarity=0.532  Sum_probs=34.1

Q ss_pred             CCCCCCccEEEEcCChHHHHHHHHHHHcCC--cEEEEcccCC
Q 014324            1 MEKKEKGKAVIVGGSIAGISCAHALLRAGW--DVVVLEKAGG   40 (426)
Q Consensus         1 m~~~~~~~V~IvGaG~aGl~~A~~L~~~G~--~v~v~E~~~~   40 (426)
                      |.++...+|+|||+|..|.++|+.|+..|.  +++++|....
T Consensus         1 m~~~~~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~   42 (316)
T 1ldn_A            1 MKNNGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANES   42 (316)
T ss_dssp             CTTTTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHH
T ss_pred             CCCCCCCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcc
Confidence            555566799999999999999999998886  7999998653

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=95.25  E-value=0.016  Score=52.73  Aligned_cols=33  Identities=24%  Similarity=0.291  Sum_probs=30.5

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAG   39 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~   39 (426)
                      ++|+|||+|..|..+|..|++.|++|+++++++
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~   36 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWP   36 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            479999999999999999999999999998764

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=95.25  E-value=0.018  Score=52.62  Aligned_cols=36  Identities=19%  Similarity=0.348  Sum_probs=31.2

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCC--cEEEEcccCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGW--DVVVLEKAGG   40 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~--~v~v~E~~~~   40 (426)
                      ++++|+|||+|-.|.++|..|+..|+  +++++|....
T Consensus         6 ~~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~~   43 (318)
T 1y6j_A            6 SRSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKE   43 (318)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC--
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChH
Confidence            45799999999999999999999998  8999998754

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=95.23  E-value=0.018  Score=52.62  Aligned_cols=37  Identities=30%  Similarity=0.520  Sum_probs=32.4

Q ss_pred             CCCCccEEEEcCChHHHHHHHHHHHcCC--cEEEEcccC
Q 014324            3 KKEKGKAVIVGGSIAGISCAHALLRAGW--DVVVLEKAG   39 (426)
Q Consensus         3 ~~~~~~V~IvGaG~aGl~~A~~L~~~G~--~v~v~E~~~   39 (426)
                      ++...+|+|||+|..|.++|..|+..|+  +++++|...
T Consensus         2 ~~~~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~   40 (326)
T 3pqe_A            2 NKHVNKVALIGAGFVGSSYAFALINQGITDELVVIDVNK   40 (326)
T ss_dssp             CCSCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecch
Confidence            3456789999999999999999999997  899999854

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=95.20  E-value=0.02  Score=52.23  Aligned_cols=37  Identities=27%  Similarity=0.388  Sum_probs=33.0

Q ss_pred             CCCccEEEEcCChHHHHHHHHHHHcCC-cEEEEcccCC
Q 014324            4 KEKGKAVIVGGSIAGISCAHALLRAGW-DVVVLEKAGG   40 (426)
Q Consensus         4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~   40 (426)
                      |...+|+|||+|-.|.++|..|+..|+ +++++|....
T Consensus         5 m~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~~   42 (324)
T 3gvi_A            5 MARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAEG   42 (324)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSS
T ss_pred             CcCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCch
Confidence            455789999999999999999999999 9999998775

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=95.20  E-value=0.017  Score=55.89  Aligned_cols=36  Identities=22%  Similarity=0.337  Sum_probs=32.9

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ..++|+|||+|-.|+.+|..|++.|++|+++|+.+.
T Consensus         7 ~~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~~   42 (478)
T 2y0c_A            7 GSMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQA   42 (478)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CCceEEEECcCHHHHHHHHHHHhCCCEEEEEECCHH
Confidence            457999999999999999999999999999998654

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=95.18  E-value=0.093  Score=53.25  Aligned_cols=42  Identities=14%  Similarity=0.152  Sum_probs=31.7

Q ss_pred             CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCch
Q 014324          122 PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLS  171 (426)
Q Consensus       122 ~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S  171 (426)
                      .|+ ++.++++.++.  ++  .+.++    .+|+..++.+|.||.|.|...
T Consensus       586 ~GV~v~~~~~v~~i~--~~--~v~~~----~~G~~~~i~~D~Vi~a~G~~p  628 (671)
T 1ps9_A          586 RGVKMIPGVSYQKID--DD--GLHVV----INGETQVLAVDNVVICAGQEP  628 (671)
T ss_dssp             TTCEEECSCEEEEEE--TT--EEEEE----ETTEEEEECCSEEEECCCEEE
T ss_pred             cCCEEEeCcEEEEEe--CC--eEEEe----cCCeEEEEeCCEEEECCCccc
Confidence            478 99999999886  33  34432    467656699999999999764

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=95.17  E-value=0.014  Score=52.75  Aligned_cols=35  Identities=17%  Similarity=-0.013  Sum_probs=32.7

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      .++|.|||.|-.|..+|..|++.|++|+++++.+.
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   49 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIE   49 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTT
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            46899999999999999999999999999998876

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=95.15  E-value=0.046  Score=52.33  Aligned_cols=43  Identities=7%  Similarity=-0.043  Sum_probs=29.2

Q ss_pred             CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCc---eEEEeecEEEeccCC
Q 014324          122 PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDE---VIEIKGNLLVAADGC  169 (426)
Q Consensus       122 ~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~---~~~~~~d~vI~AdG~  169 (426)
                      .|+ ++.++++++++  .+  .+++... ..+|+   ..++.+|+||.|.|.
T Consensus       221 ~gI~~~~~~~v~~v~--~~--~v~~~~~-~~~g~~~~~~~i~~D~vv~~~g~  267 (437)
T 3sx6_A          221 EGIEAYTNCKVTKVE--DN--KMYVTQV-DEKGETIKEMVLPVKFGMMIPAF  267 (437)
T ss_dssp             TTCEEECSEEEEEEE--TT--EEEEEEE-CTTSCEEEEEEEECSEEEEECCE
T ss_pred             CCCEEEcCCEEEEEE--CC--eEEEEec-ccCCccccceEEEEeEEEEcCCC
Confidence            477 89999999886  33  3443311 23443   446899999999884

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=95.11  E-value=0.0063  Score=52.51  Aligned_cols=36  Identities=19%  Similarity=0.173  Sum_probs=31.7

Q ss_pred             CCCCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcc
Q 014324            2 EKKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEK   37 (426)
Q Consensus         2 ~~~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~   37 (426)
                      |....++|.|||+|..|.++|..|+++|++|+++++
T Consensus         2 ~~~~~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~   37 (232)
T 3dfu_A            2 MQAPRLRVGIFDDGSSTVNMAEKLDSVGHYVTVLHA   37 (232)
T ss_dssp             -CCCCCEEEEECCSCCCSCHHHHHHHTTCEEEECSS
T ss_pred             CCCCCcEEEEEeeCHHHHHHHHHHHHCCCEEEEecC
Confidence            334567899999999999999999999999999887

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=95.11  E-value=0.021  Score=55.34  Aligned_cols=36  Identities=14%  Similarity=0.284  Sum_probs=32.8

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ...+|.|||+|..|...|..|+++|++|+++|+++.
T Consensus         4 ~~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~e   39 (483)
T 3mog_A            4 NVQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAE   39 (483)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEECCHH
Confidence            445899999999999999999999999999998765

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=95.10  E-value=0.018  Score=52.57  Aligned_cols=33  Identities=30%  Similarity=0.366  Sum_probs=30.3

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAG   39 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~   39 (426)
                      ++|+|||+|-.|.+.|..|++.|.+|++++|..
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD   35 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc
Confidence            479999999999999999999999999999864

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=95.09  E-value=0.02  Score=52.33  Aligned_cols=34  Identities=24%  Similarity=0.357  Sum_probs=31.3

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCC--cEEEEcccC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGW--DVVVLEKAG   39 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~--~v~v~E~~~   39 (426)
                      .++|+|||+|-.|.++|..|++.|+  +|+++|+..
T Consensus         7 ~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~   42 (319)
T 1lld_A            7 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   42 (319)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            3689999999999999999999998  999999865

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=95.09  E-value=0.022  Score=51.98  Aligned_cols=35  Identities=26%  Similarity=0.382  Sum_probs=32.0

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCC-cEEEEcccCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGW-DVVVLEKAGG   40 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~   40 (426)
                      .++|+|||+|-.|.++|..|+++|+ +|+++|+...
T Consensus         4 ~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~~   39 (317)
T 2ewd_A            4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAEG   39 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCch
Confidence            3689999999999999999999998 9999999764

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=95.07  E-value=0.025  Score=51.62  Aligned_cols=35  Identities=23%  Similarity=0.340  Sum_probs=32.0

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      .++|.|||+|..|...|..|++.|++|+++++...
T Consensus        30 ~~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~   64 (316)
T 2uyy_A           30 DKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAE   64 (316)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGG
T ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            46899999999999999999999999999998754

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=95.06  E-value=0.011  Score=52.44  Aligned_cols=36  Identities=14%  Similarity=0.349  Sum_probs=32.6

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ....|+|||||.+|+..|..|.+.|.+|+|+++...
T Consensus        12 ~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~~   47 (274)
T 1kyq_A           12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDLH   47 (274)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEEC
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence            457899999999999999999999999999987653

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=95.03  E-value=0.021  Score=54.90  Aligned_cols=34  Identities=18%  Similarity=0.259  Sum_probs=31.8

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ++|.|||+|-.|+.+|..|+++|++|+++|+.+.
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~~   36 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDRN   36 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCHH
Confidence            5899999999999999999999999999998764

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=95.02  E-value=0.0093  Score=57.54  Aligned_cols=63  Identities=14%  Similarity=0.160  Sum_probs=43.4

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCC--CCCc-ceeccChhHHHHHHHHhcC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTG--SPTG-AGLGLDRPAQRIIQSWLNG   67 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~--~~~~-~~~~l~~~~~~~l~~~~~~   67 (426)
                      ..++|+|+|+|-.|..+|..|...|++|+|+|+++..-..  ...+ ..+.=.+...+.|++.|..
T Consensus         2 ~~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~i~Gd~~~~~~L~~Agi~   67 (461)
T 4g65_A            2 NAMKIIILGAGQVGGTLAENLVGENNDITIVDKDGDRLRELQDKYDLRVVNGHASHPDVLHEAGAQ   67 (461)
T ss_dssp             CCEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHSSCEEEESCTTCHHHHHHHTTT
T ss_pred             CcCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcCcEEEEEcCCCHHHHHhcCCC
Confidence            3578999999999999999999999999999998653110  0011 1121223345577777764

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=95.00  E-value=0.021  Score=54.98  Aligned_cols=35  Identities=20%  Similarity=0.256  Sum_probs=33.0

Q ss_pred             CccEEEEcCChHHHHHHHHHHHc-CC-cEEEEcccCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRA-GW-DVVVLEKAGG   40 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~-G~-~v~v~E~~~~   40 (426)
                      .++|.|||+|-.|+.+|..|+++ |+ +|+++|+.+.
T Consensus        18 ~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~   54 (478)
T 3g79_A           18 IKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSK   54 (478)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCT
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChh
Confidence            35899999999999999999999 99 9999999987

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=95.00  E-value=0.026  Score=51.56  Aligned_cols=34  Identities=26%  Similarity=0.427  Sum_probs=31.4

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCC-cEEEEcccCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGW-DVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~   40 (426)
                      .+|+|||||-.|..+|..|+..|+ +|+++|....
T Consensus         5 ~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~~   39 (322)
T 1t2d_A            5 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKN   39 (322)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCHH
Confidence            589999999999999999999998 9999998754

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=94.97  E-value=0.027  Score=51.38  Aligned_cols=37  Identities=32%  Similarity=0.399  Sum_probs=33.2

Q ss_pred             CCCccEEEEcCChHHHHHHHHHHHcCC-cEEEEcccCC
Q 014324            4 KEKGKAVIVGGSIAGISCAHALLRAGW-DVVVLEKAGG   40 (426)
Q Consensus         4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~   40 (426)
                      |...+|+|||+|..|.++|..|+..|+ +++++|....
T Consensus         3 m~~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~~   40 (321)
T 3p7m_A            3 MARKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQG   40 (321)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCChH
Confidence            445789999999999999999999998 9999999775

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=94.97  E-value=0.011  Score=55.33  Aligned_cols=32  Identities=28%  Similarity=0.320  Sum_probs=30.0

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCcEEEEcccC
Q 014324            8 KAVIVGGSIAGISCAHALLRAGWDVVVLEKAG   39 (426)
Q Consensus         8 ~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~   39 (426)
                      +|.|||+|-.|.++|..|++.|++|+++++.+
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~   48 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNE   48 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEEEEEEECSCH
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            79999999999999999999999999998764

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=94.91  E-value=0.022  Score=52.96  Aligned_cols=36  Identities=17%  Similarity=0.248  Sum_probs=32.7

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ...+|+|||+|.+|+.+|..|...|.+|+++|++..
T Consensus       183 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~  218 (381)
T 3p2y_A          183 KPASALVLGVGVAGLQALATAKRLGAKTTGYDVRPE  218 (381)
T ss_dssp             CCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGG
T ss_pred             CCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            346899999999999999999999999999998865

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=94.90  E-value=0.026  Score=53.97  Aligned_cols=37  Identities=16%  Similarity=0.330  Sum_probs=34.0

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP   41 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   41 (426)
                      .+.+|.|||.|-.|+.+|..|+++|++|+++|+++..
T Consensus         7 ~~~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~k   43 (446)
T 4a7p_A            7 GSVRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDARK   43 (446)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTT
T ss_pred             CceEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence            3578999999999999999999999999999998763

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=94.86  E-value=0.016  Score=49.93  Aligned_cols=35  Identities=14%  Similarity=0.190  Sum_probs=31.3

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEE-EcccCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVV-LEKAGG   40 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v-~E~~~~   40 (426)
                      .++|.|||+|-.|.++|..|.+.|++|++ +++.+.
T Consensus        23 mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~   58 (220)
T 4huj_A           23 MTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPA   58 (220)
T ss_dssp             SCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHH
Confidence            36899999999999999999999999998 787654

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=94.84  E-value=0.022  Score=51.40  Aligned_cols=33  Identities=15%  Similarity=0.169  Sum_probs=31.0

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAG   39 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~   39 (426)
                      ++|+|||+|-.|.+.|..|++.|.+|++++|..
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~   35 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHA   35 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSC
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEecc
Confidence            479999999999999999999999999999874

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=94.82  E-value=0.027  Score=51.09  Aligned_cols=36  Identities=25%  Similarity=0.195  Sum_probs=32.0

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ..++|.|||.|-.|..+|..|++.|++|+++++.+.
T Consensus         6 ~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~   41 (303)
T 3g0o_A            6 TDFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQ   41 (303)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCHH
Confidence            346899999999999999999999999999988654

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=94.79  E-value=0.027  Score=51.20  Aligned_cols=35  Identities=23%  Similarity=0.320  Sum_probs=32.4

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      .++|.|||.|-.|..+|..|++.|++|+++++.+.
T Consensus        21 m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   55 (310)
T 3doj_A           21 MMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLS   55 (310)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGG
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            36899999999999999999999999999998765

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=94.75  E-value=0.026  Score=51.60  Aligned_cols=35  Identities=23%  Similarity=0.385  Sum_probs=32.1

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      .++|.|||.|-.|..+|..|++.|++|+++++.+.
T Consensus        31 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~   65 (320)
T 4dll_A           31 ARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPA   65 (320)
T ss_dssp             CSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHH
Confidence            35899999999999999999999999999998764

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=94.74  E-value=0.02  Score=52.23  Aligned_cols=32  Identities=19%  Similarity=0.121  Sum_probs=29.7

Q ss_pred             CccEEEEcCChHHHHHHHHHHHc-----C-CcEEEEcc
Q 014324            6 KGKAVIVGGSIAGISCAHALLRA-----G-WDVVVLEK   37 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~-----G-~~v~v~E~   37 (426)
                      .++|.|||+|..|.++|..|++.     | ++|++++|
T Consensus         8 ~m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r   45 (317)
T 2qyt_A            8 PIKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR   45 (317)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc
Confidence            36899999999999999999999     9 99999987

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=94.71  E-value=0.032  Score=49.25  Aligned_cols=35  Identities=17%  Similarity=0.115  Sum_probs=31.8

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcC----CcEEEEcccCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAG----WDVVVLEKAGG   40 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G----~~v~v~E~~~~   40 (426)
                      .++|.|||+|-.|.+.|..|.+.|    .+|.++++.+.
T Consensus         4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~   42 (262)
T 2rcy_A            4 NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKK   42 (262)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCC
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCcc
Confidence            458999999999999999999999    69999998865

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=94.63  E-value=0.033  Score=48.72  Aligned_cols=36  Identities=22%  Similarity=0.276  Sum_probs=32.6

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ...+|.|||+|-.|.++|..|++.|++|+++++.+.
T Consensus        18 ~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~   53 (245)
T 3dtt_A           18 QGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPK   53 (245)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChh
Confidence            457899999999999999999999999999998765

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=94.59  E-value=0.032  Score=50.59  Aligned_cols=33  Identities=27%  Similarity=0.478  Sum_probs=30.5

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCC--cEEEEcccCC
Q 014324            8 KAVIVGGSIAGISCAHALLRAGW--DVVVLEKAGG   40 (426)
Q Consensus         8 ~V~IvGaG~aGl~~A~~L~~~G~--~v~v~E~~~~   40 (426)
                      +|+|||+|-.|.++|..|+..|+  +|+++|+...
T Consensus         2 kI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~~   36 (304)
T 2v6b_A            2 KVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDED   36 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCHH
Confidence            79999999999999999999998  9999998653

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=94.59  E-value=0.029  Score=50.35  Aligned_cols=34  Identities=26%  Similarity=0.387  Sum_probs=31.8

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ++|.|||.|-.|..+|..|++.|++|+++++.+.
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~   35 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPE   35 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGG
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            4799999999999999999999999999998765

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=94.56  E-value=0.038  Score=50.62  Aligned_cols=34  Identities=18%  Similarity=0.040  Sum_probs=31.1

Q ss_pred             ccEEEEcCChHHHH-HHHHHHHcCCcEEEEcccCC
Q 014324            7 GKAVIVGGSIAGIS-CAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGaG~aGl~-~A~~L~~~G~~v~v~E~~~~   40 (426)
                      .+|.|||.|.+|++ +|..|.++|++|.++|++..
T Consensus         5 ~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~   39 (326)
T 3eag_A            5 KHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMY   39 (326)
T ss_dssp             CEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             cEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence            57999999999996 89999999999999999765

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=94.52  E-value=0.039  Score=52.76  Aligned_cols=34  Identities=21%  Similarity=0.327  Sum_probs=32.1

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      .+|.|||+|..|...|..|+++|++|+++|+++.
T Consensus        55 ~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e   88 (460)
T 3k6j_A           55 NSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQ   88 (460)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHH
Confidence            5799999999999999999999999999999875

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=94.46  E-value=0.036  Score=51.43  Aligned_cols=36  Identities=17%  Similarity=0.224  Sum_probs=32.4

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ..++|.|||.|-.|..+|..|++.|++|+++++.+.
T Consensus        21 ~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~   56 (358)
T 4e21_A           21 QSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVN   56 (358)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             cCCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            346899999999999999999999999999998764

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=94.46  E-value=0.021  Score=53.07  Aligned_cols=37  Identities=19%  Similarity=0.057  Sum_probs=32.5

Q ss_pred             CCCccEEEEcCChHHHHHHHHHHHcC-------CcEEEEcccCC
Q 014324            4 KEKGKAVIVGGSIAGISCAHALLRAG-------WDVVVLEKAGG   40 (426)
Q Consensus         4 ~~~~~V~IvGaG~aGl~~A~~L~~~G-------~~v~v~E~~~~   40 (426)
                      |..++|.|||+|-.|.++|..|++.|       ++|+++++.+.
T Consensus         6 m~~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~   49 (354)
T 1x0v_A            6 MASKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEED   49 (354)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCB
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChh
Confidence            33468999999999999999999999       89999998765

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=94.46  E-value=0.036  Score=49.83  Aligned_cols=34  Identities=21%  Similarity=0.326  Sum_probs=31.3

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      +.+|.|||+|..|...|..|+ +|++|+++|+.+.
T Consensus        12 ~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~~   45 (293)
T 1zej_A           12 HMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSEK   45 (293)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHH
T ss_pred             CCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCHH
Confidence            468999999999999999999 9999999998764

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=94.45  E-value=0.039  Score=50.51  Aligned_cols=36  Identities=11%  Similarity=0.147  Sum_probs=31.6

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcC----CcEEEEcccCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAG----WDVVVLEKAGG   40 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G----~~v~v~E~~~~   40 (426)
                      +.++|.|||+|-.|.++|..|.+.|    ++|+++++...
T Consensus        21 ~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~   60 (322)
T 2izz_A           21 QSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMD   60 (322)
T ss_dssp             -CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCcc
Confidence            3468999999999999999999999    79999988764

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=94.42  E-value=0.022  Score=51.97  Aligned_cols=34  Identities=15%  Similarity=-0.029  Sum_probs=31.9

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcC-CcEEEEcccCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAG-WDVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G-~~v~v~E~~~~   40 (426)
                      ++|.|||.|-.|..+|..|++.| ++|+++++.+.
T Consensus        25 m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~~   59 (317)
T 4ezb_A           25 TTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFN   59 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGGG
T ss_pred             CeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCCc
Confidence            57999999999999999999999 99999999874

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=94.38  E-value=0.04  Score=52.20  Aligned_cols=35  Identities=26%  Similarity=0.307  Sum_probs=32.5

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      +..|+|||.|..|..+|..|.++|++|+|+|+++.
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~   38 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPD   38 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
Confidence            45799999999999999999999999999998865

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=94.35  E-value=0.04  Score=53.18  Aligned_cols=34  Identities=24%  Similarity=0.282  Sum_probs=31.5

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      .+|.|||+|..|...|..|+++|++|+++|+++.
T Consensus        38 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~   71 (463)
T 1zcj_A           38 SSVGVLGLGTMGRGIAISFARVGISVVAVESDPK   71 (463)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            4799999999999999999999999999998764

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=94.33  E-value=0.015  Score=46.23  Aligned_cols=35  Identities=17%  Similarity=0.193  Sum_probs=31.1

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ..+|+|||+|..|..+|..|.+.|++|+++++...
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~~   55 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNID   55 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGCCTTTCEEEEEESCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCHH
Confidence            45899999999999999999999999999988653

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=94.32  E-value=0.037  Score=53.62  Aligned_cols=37  Identities=19%  Similarity=0.322  Sum_probs=32.6

Q ss_pred             CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      |.+.+|.|||+|..|..+|..|+++|++|++++|.+.
T Consensus        13 ~~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~~   49 (480)
T 2zyd_A           13 MSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSRE   49 (480)
T ss_dssp             --CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSHH
T ss_pred             cCCCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            5667899999999999999999999999999998754

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=94.31  E-value=0.048  Score=48.90  Aligned_cols=34  Identities=15%  Similarity=0.228  Sum_probs=30.9

Q ss_pred             ccEEEEcC-ChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            7 GKAVIVGG-SIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGa-G~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ++|.|||+ |-.|..+|..|.+.|++|+++++...
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~   46 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPE   46 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHH
Confidence            58999999 99999999999999999999987643

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=94.30  E-value=0.033  Score=53.82  Aligned_cols=34  Identities=15%  Similarity=0.199  Sum_probs=31.1

Q ss_pred             ccEEEEcCChHHHHHHHHHHHc--CCcEEEEcccCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRA--GWDVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~--G~~v~v~E~~~~   40 (426)
                      ++|.|||+|-.|+.+|..|++.  |++|+++|+.+.
T Consensus         6 mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~   41 (467)
T 2q3e_A            6 KKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNES   41 (467)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHH
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHH
Confidence            5899999999999999999999  899999998754

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=94.29  E-value=0.041  Score=53.20  Aligned_cols=36  Identities=14%  Similarity=0.182  Sum_probs=32.7

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP   41 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   41 (426)
                      ..+|+|||+|.+|+-+|..|++.|.+|+++++++.+
T Consensus       197 ~k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~~~  232 (464)
T 2xve_A          197 DKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTAP  232 (464)
T ss_dssp             TSEEEEECCSTTHHHHHHHHHHTTCSEEEEECSSCC
T ss_pred             CCEEEEEcCCCCHHHHHHHHHHhCCeEEEEEECCCC
Confidence            357999999999999999999999999999987753

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=94.28  E-value=0.045  Score=51.39  Aligned_cols=35  Identities=17%  Similarity=0.302  Sum_probs=32.0

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ..+|+|+|+|++|+.+|..+...|.+|+++|++..
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~  206 (384)
T 1l7d_A          172 PARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAA  206 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            46899999999999999999999999999998765

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=94.27  E-value=0.038  Score=52.21  Aligned_cols=35  Identities=20%  Similarity=0.307  Sum_probs=31.9

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ..+|+|+|+|.+|+.+|..|...|.+|+++|++..
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~  206 (401)
T 1x13_A          172 PAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPE  206 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGG
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            46899999999999999999999999999998764

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=94.26  E-value=0.049  Score=46.57  Aligned_cols=35  Identities=29%  Similarity=0.265  Sum_probs=31.2

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      .++|.|||+|-.|...|..|.+.|++|.+++++..
T Consensus        28 ~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~~   62 (215)
T 2vns_A           28 APKVGILGSGDFARSLATRLVGSGFKVVVGSRNPK   62 (215)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSHH
T ss_pred             CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            35899999999999999999999999999988653

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=94.24  E-value=0.045  Score=49.77  Aligned_cols=33  Identities=24%  Similarity=0.448  Sum_probs=30.1

Q ss_pred             cEEEEcCChHHHHHHHHHHHc--CCcEEEEcccCC
Q 014324            8 KAVIVGGSIAGISCAHALLRA--GWDVVVLEKAGG   40 (426)
Q Consensus         8 ~V~IvGaG~aGl~~A~~L~~~--G~~v~v~E~~~~   40 (426)
                      +|+|||+|-.|.++|..|++.  |.+|+++|+...
T Consensus         2 kI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~   36 (310)
T 1guz_A            2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEG   36 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChh
Confidence            799999999999999999985  789999999764

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=94.24  E-value=0.048  Score=52.64  Aligned_cols=36  Identities=11%  Similarity=0.254  Sum_probs=33.0

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ..++|.|||.|..|..+|..|+++|++|+++++.+.
T Consensus         3 ~~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~   38 (484)
T 4gwg_A            3 AQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVS   38 (484)
T ss_dssp             CCBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTH
T ss_pred             CCCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            346899999999999999999999999999998875

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=94.23  E-value=0.053  Score=48.48  Aligned_cols=35  Identities=14%  Similarity=0.317  Sum_probs=31.7

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCC---cEEEEcccCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGW---DVVVLEKAGG   40 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~---~v~v~E~~~~   40 (426)
                      .++|.|||+|-.|.+.|..|.++|+   +|.++++++.
T Consensus         3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~   40 (280)
T 3tri_A            3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLD   40 (280)
T ss_dssp             CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSH
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHH
Confidence            3689999999999999999999998   8999998764

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=94.22  E-value=0.034  Score=53.25  Aligned_cols=33  Identities=24%  Similarity=0.409  Sum_probs=30.7

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            8 KAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         8 ~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      +|.|||+|-.|+.+|..|++.|++|+++|+.+.
T Consensus         2 kI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~~   34 (436)
T 1mv8_A            2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSST   34 (436)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            699999999999999999999999999998654

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=94.21  E-value=0.057  Score=51.37  Aligned_cols=38  Identities=24%  Similarity=0.232  Sum_probs=33.5

Q ss_pred             CCCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            3 KKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         3 ~~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      .+...+|+|+|+|..|..++..+++.|++|+++|..+.
T Consensus        32 ~~~~~~IlIlG~G~lg~~~~~aa~~lG~~v~v~d~~~~   69 (419)
T 4e4t_A           32 ILPGAWLGMVGGGQLGRMFCFAAQSMGYRVAVLDPDPA   69 (419)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCTT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence            44567899999999999999999999999999987654

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=94.20  E-value=0.043  Score=50.10  Aligned_cols=33  Identities=27%  Similarity=0.401  Sum_probs=29.4

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAG   39 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~   39 (426)
                      .++|+|||+|-.|.++|..|++.|.+|+++ +++
T Consensus        19 ~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~   51 (318)
T 3hwr_A           19 GMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARP   51 (318)
T ss_dssp             -CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCH
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcH
Confidence            468999999999999999999999999999 543

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=94.20  E-value=0.049  Score=49.44  Aligned_cols=34  Identities=32%  Similarity=0.495  Sum_probs=30.9

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCC-cEEEEcccCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGW-DVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~   40 (426)
                      ++|+|||||-.|..+|..|+..|+ +|+++|....
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~~   37 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEG   37 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCcc
Confidence            489999999999999999999997 9999998754

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=94.19  E-value=0.045  Score=49.93  Aligned_cols=37  Identities=24%  Similarity=0.413  Sum_probs=32.2

Q ss_pred             CCCCccEEEEcCChHHHHHHHHHHHcCC--cEEEEcccC
Q 014324            3 KKEKGKAVIVGGSIAGISCAHALLRAGW--DVVVLEKAG   39 (426)
Q Consensus         3 ~~~~~~V~IvGaG~aGl~~A~~L~~~G~--~v~v~E~~~   39 (426)
                      ++...+|+|||+|..|.++|..|+..|+  +++++|...
T Consensus         6 ~~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~   44 (326)
T 3vku_A            6 DKDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFK   44 (326)
T ss_dssp             -CCCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCH
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCCh
Confidence            3556799999999999999999999998  899999854

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=94.18  E-value=0.039  Score=52.33  Aligned_cols=34  Identities=24%  Similarity=0.271  Sum_probs=31.1

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      .++|.|||+|-.|+.+|..|++ |++|+++|+.+.
T Consensus        36 ~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~   69 (432)
T 3pid_A           36 FMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQA   69 (432)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHH
Confidence            3589999999999999999998 999999998765

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=94.18  E-value=0.06  Score=48.83  Aligned_cols=35  Identities=23%  Similarity=0.371  Sum_probs=32.1

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ..+|.|||.|..|..+|..|.+.|++|+++++.+.
T Consensus         9 ~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   43 (306)
T 3l6d_A            9 EFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPG   43 (306)
T ss_dssp             SCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            46899999999999999999999999999988764

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=94.15  E-value=0.11  Score=48.70  Aligned_cols=36  Identities=25%  Similarity=0.342  Sum_probs=32.5

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP   41 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   41 (426)
                      ...|+|+|+|..|..+|..+++.|++|++++..+..
T Consensus        14 ~k~IlIlG~G~~g~~la~aa~~~G~~vi~~d~~~~~   49 (389)
T 3q2o_A           14 GKTIGIIGGGQLGRMMALAAKEMGYKIAVLDPTKNS   49 (389)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSTTC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCC
Confidence            458999999999999999999999999999987653

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=94.13  E-value=0.046  Score=50.27  Aligned_cols=34  Identities=18%  Similarity=0.277  Sum_probs=31.4

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAG   39 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~   39 (426)
                      .++|.|||+|-.|.++|..|++.|++|++++|.+
T Consensus        14 ~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~   47 (335)
T 1z82_A           14 EMRFFVLGAGSWGTVFAQMLHENGEEVILWARRK   47 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            4689999999999999999999999999998764

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=94.06  E-value=0.061  Score=48.06  Aligned_cols=35  Identities=29%  Similarity=0.430  Sum_probs=32.1

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP   41 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   41 (426)
                      ++|+|.|+|..|..++..|.++|++|+++.|....
T Consensus         4 ~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~   38 (286)
T 3gpi_A            4 SKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQP   38 (286)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTSC
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCccc
Confidence            57999999999999999999999999999988653

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=94.03  E-value=0.043  Score=50.39  Aligned_cols=30  Identities=20%  Similarity=0.297  Sum_probs=28.9

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCcEEEEcc
Q 014324            8 KAVIVGGSIAGISCAHALLRAGWDVVVLEK   37 (426)
Q Consensus         8 ~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~   37 (426)
                      +|.|||+|-.|.++|..|++.|++|+++++
T Consensus         2 ~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r   31 (335)
T 1txg_A            2 IVSILGAGAMGSALSVPLVDNGNEVRIWGT   31 (335)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEEc
Confidence            699999999999999999999999999998

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=94.01  E-value=0.048  Score=49.47  Aligned_cols=32  Identities=34%  Similarity=0.425  Sum_probs=29.7

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAG   39 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~   39 (426)
                      ++|+|||+|-.|.+.|..|+ .|.+|++++|..
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~   34 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQ   34 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCCceEEEECCH
Confidence            58999999999999999999 999999999865

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=94.01  E-value=0.036  Score=49.73  Aligned_cols=33  Identities=33%  Similarity=0.428  Sum_probs=31.2

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            8 KAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         8 ~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      +|.|||.|-.|..+|..|++.|++|+++++.+.
T Consensus         3 ~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~   35 (287)
T 3pdu_A            3 TYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPA   35 (287)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHTCCEEEECSSGG
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            699999999999999999999999999998765

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=93.92  E-value=0.049  Score=50.66  Aligned_cols=35  Identities=29%  Similarity=0.475  Sum_probs=31.5

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ..+|+|+|+|.+|+.++..|+..|.+|++++++..
T Consensus       167 ~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~  201 (361)
T 1pjc_A          167 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVE  201 (361)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            36899999999999999999999999999988653

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=93.88  E-value=0.05  Score=47.71  Aligned_cols=35  Identities=23%  Similarity=0.292  Sum_probs=31.6

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCC-cEEEEcccCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGW-DVVVLEKAGG   40 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~   40 (426)
                      ..+|+|||+|-.|..+|..|++.|+ +++|+|+..-
T Consensus        31 ~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~v   66 (249)
T 1jw9_B           31 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTV   66 (249)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBC
T ss_pred             CCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCCc
Confidence            3589999999999999999999998 8999998764

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=93.88  E-value=0.049  Score=52.84  Aligned_cols=34  Identities=21%  Similarity=0.246  Sum_probs=31.0

Q ss_pred             ccEEEEcCChHHHHHHHHHHHc--CCcEEEEcccCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRA--GWDVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~--G~~v~v~E~~~~   40 (426)
                      ++|.|||+|-.|+.+|..|+++  |++|+++|+.+.
T Consensus        10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~   45 (481)
T 2o3j_A           10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTA   45 (481)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHH
Confidence            5899999999999999999998  799999998654

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=93.85  E-value=0.047  Score=53.93  Aligned_cols=36  Identities=11%  Similarity=0.246  Sum_probs=33.4

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP   41 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   41 (426)
                      ..+|+|||+|.+|+-+|..|++.|.+|+||+|.+..
T Consensus       191 ~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~  226 (549)
T 4ap3_A          191 GKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSANY  226 (549)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCC
T ss_pred             CCEEEEECCCchHHHHHHHHHhhCCEEEEEECCCCc
Confidence            458999999999999999999999999999999873

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=93.76  E-value=0.054  Score=48.67  Aligned_cols=34  Identities=21%  Similarity=0.162  Sum_probs=30.9

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCC--cEEEEcccCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGW--DVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~--~v~v~E~~~~   40 (426)
                      ++|+|||+|..|.++|..|++.|+  +++++|+.+.
T Consensus         1 MkI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~~   36 (294)
T 1oju_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAED   36 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECChH
Confidence            379999999999999999999998  8999998764

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=93.72  E-value=0.061  Score=48.84  Aligned_cols=34  Identities=24%  Similarity=0.431  Sum_probs=31.1

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCC--cEEEEcccCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGW--DVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~--~v~v~E~~~~   40 (426)
                      ++|+|||+|..|.++|..|++.|+  +++++|....
T Consensus         1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~   36 (314)
T 3nep_X            1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDIKDG   36 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECSSTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCchH
Confidence            379999999999999999999997  8999999775

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=93.68  E-value=0.067  Score=49.62  Aligned_cols=35  Identities=40%  Similarity=0.589  Sum_probs=32.2

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCC-cEEEEcccC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGW-DVVVLEKAG   39 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~   39 (426)
                      .+.+|+|+|||.||..+|..|...|. +|+++|++-
T Consensus       187 ~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~G  222 (398)
T 2a9f_A          187 DEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFG  222 (398)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred             CccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            46799999999999999999999999 999999874

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=93.68  E-value=0.077  Score=48.80  Aligned_cols=35  Identities=20%  Similarity=0.185  Sum_probs=31.6

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ..+|.|||.|..|.++|..|.+.|++|+++++++.
T Consensus         8 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~   42 (341)
T 3ktd_A            8 SRPVCILGLGLIGGSLLRDLHAANHSVFGYNRSRS   42 (341)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHH
T ss_pred             CCEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            35899999999999999999999999999997654

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=93.61  E-value=0.055  Score=48.79  Aligned_cols=34  Identities=29%  Similarity=0.446  Sum_probs=31.1

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ++|.|||+|..|...|..|.+.|++|.++++.+.
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~   39 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPE   39 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            5899999999999999999999999999988654

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=93.54  E-value=0.061  Score=49.09  Aligned_cols=33  Identities=36%  Similarity=0.455  Sum_probs=30.3

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCC--cEEEEcccCC
Q 014324            8 KAVIVGGSIAGISCAHALLRAGW--DVVVLEKAGG   40 (426)
Q Consensus         8 ~V~IvGaG~aGl~~A~~L~~~G~--~v~v~E~~~~   40 (426)
                      +|+|||+|-.|.++|..|++.|+  +|+++|+...
T Consensus         2 kI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~~   36 (319)
T 1a5z_A            2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKK   36 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChH
Confidence            69999999999999999999999  9999998653

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=93.52  E-value=0.076  Score=49.71  Aligned_cols=36  Identities=28%  Similarity=0.338  Sum_probs=32.0

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ....|+|+|+|..|+.+|..++..|.+|+++|+...
T Consensus       167 ~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~  202 (377)
T 2vhw_A          167 EPADVVVIGAGTAGYNAARIANGMGATVTVLDINID  202 (377)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            346899999999999999999999999999987653

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=93.48  E-value=0.078  Score=51.27  Aligned_cols=35  Identities=17%  Similarity=0.320  Sum_probs=31.9

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      +.+|.|||+|..|..+|..|+++|++|.++++.+.
T Consensus         5 ~~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~~   39 (474)
T 2iz1_A            5 QANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTS   39 (474)
T ss_dssp             TBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred             CCcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCHH
Confidence            46899999999999999999999999999998653

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=93.45  E-value=0.064  Score=48.39  Aligned_cols=35  Identities=23%  Similarity=0.216  Sum_probs=31.6

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      .++|.|||+|-.|...|..|.+.|++|+++++.+.
T Consensus         4 ~~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~   38 (301)
T 3cky_A            4 SIKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEA   38 (301)
T ss_dssp             CCEEEEECCCTTHHHHHHHHHHTTCEEEEECSSHH
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            46899999999999999999999999999988653

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=93.44  E-value=0.073  Score=47.42  Aligned_cols=33  Identities=27%  Similarity=0.323  Sum_probs=29.9

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            8 KAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         8 ~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      +|.|||+|..|.++|..|.+.|++|+++++.+.
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~   34 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQS   34 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            699999999999999999999999999987643

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=93.42  E-value=0.076  Score=49.57  Aligned_cols=36  Identities=28%  Similarity=0.424  Sum_probs=32.0

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ....|+|+|+|..|+.+|..|+..|.+|+++|++..
T Consensus       165 ~~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~  200 (369)
T 2eez_A          165 APASVVILGGGTVGTNAAKIALGMGAQVTILDVNHK  200 (369)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHH
Confidence            346899999999999999999999999999987653

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=93.40  E-value=0.073  Score=50.60  Aligned_cols=34  Identities=18%  Similarity=0.193  Sum_probs=31.7

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      .+|+|||.|-+||.+|..|++.|++|+.+|.++.
T Consensus        22 ~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~~   55 (444)
T 3vtf_A           22 ASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNPS   55 (444)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHH
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCcEEEEECCHH
Confidence            5899999999999999999999999999998764

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=93.39  E-value=0.057  Score=51.97  Aligned_cols=35  Identities=29%  Similarity=0.275  Sum_probs=31.9

Q ss_pred             CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEccc
Q 014324            4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKA   38 (426)
Q Consensus         4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~   38 (426)
                      ....+|+|||||.+|...+..|.+.|.+|+|+++.
T Consensus        10 l~~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~   44 (457)
T 1pjq_A           10 LRDRDCLIVGGGDVAERKARLLLEAGARLTVNALT   44 (457)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCC
Confidence            34578999999999999999999999999999975

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=93.35  E-value=0.072  Score=46.04  Aligned_cols=37  Identities=14%  Similarity=0.159  Sum_probs=32.1

Q ss_pred             CCCccEEEEcC-ChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            4 KEKGKAVIVGG-SIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         4 ~~~~~V~IvGa-G~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      +..+.|+|.|| |-.|..++..|.++|++|+++.|...
T Consensus        19 l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~   56 (236)
T 3e8x_A           19 FQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEE   56 (236)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             cCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChH
Confidence            34578999998 99999999999999999999998754

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=93.29  E-value=0.075  Score=45.13  Aligned_cols=33  Identities=21%  Similarity=0.293  Sum_probs=30.1

Q ss_pred             cEEEEc-CChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            8 KAVIVG-GSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         8 ~V~IvG-aG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      +|+||| +|-.|..+|..|.++|++|++++|...
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~   35 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRREE   35 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHH
T ss_pred             eEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            699999 999999999999999999999988643

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=93.22  E-value=0.056  Score=51.08  Aligned_cols=32  Identities=19%  Similarity=0.254  Sum_probs=29.6

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            8 KAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         8 ~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      +|.|||+|-.|+.+|..|++ |++|+++++.+.
T Consensus         2 kI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~~   33 (402)
T 1dlj_A            2 KIAVAGSGYVGLSLGVLLSL-QNEVTIVDILPS   33 (402)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSCHH
T ss_pred             EEEEECCCHHHHHHHHHHhC-CCEEEEEECCHH
Confidence            69999999999999999999 999999998754

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=93.20  E-value=0.087  Score=48.02  Aligned_cols=35  Identities=20%  Similarity=0.310  Sum_probs=31.4

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCC--cEEEEcccCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGW--DVVVLEKAGG   40 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~--~v~v~E~~~~   40 (426)
                      ..+|+|||+|..|.++|..|+..|+  +++++|....
T Consensus        21 ~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~~   57 (330)
T 3ldh_A           21 YNKITVVGCDAVGMADAISVLMKDLADEVALVDVMED   57 (330)
T ss_dssp             CCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCHH
Confidence            4689999999999999999999998  8999998554

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=93.18  E-value=0.089  Score=48.71  Aligned_cols=35  Identities=31%  Similarity=0.397  Sum_probs=32.0

Q ss_pred             CCCccEEEEcCChHHHHHHHHHHHcCC-cEEEEccc
Q 014324            4 KEKGKAVIVGGSIAGISCAHALLRAGW-DVVVLEKA   38 (426)
Q Consensus         4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~   38 (426)
                      ....+|+|+|||-+|..+|..|...|. +|+++|+.
T Consensus       190 l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~  225 (388)
T 1vl6_A          190 IEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK  225 (388)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             CCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            356799999999999999999999998 79999987

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=93.18  E-value=0.06  Score=48.57  Aligned_cols=35  Identities=29%  Similarity=0.449  Sum_probs=28.0

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP   41 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   41 (426)
                      .+|.+||-|..|..+|..|.++|++|+++++.+..
T Consensus         6 ~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~~   40 (297)
T 4gbj_A            6 EKIAFLGLGNLGTPIAEILLEAGYELVVWNRTASK   40 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEC------
T ss_pred             CcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHHH
Confidence            47999999999999999999999999999998764

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=93.16  E-value=0.088  Score=48.96  Aligned_cols=35  Identities=29%  Similarity=0.450  Sum_probs=32.2

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324            8 KAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP   42 (426)
Q Consensus         8 ~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~   42 (426)
                      +|+|+|||..|..+|..+++.|++|+++|..+...
T Consensus         3 ~I~ilGgg~~g~~~~~~Ak~~G~~vv~vd~~~~~~   37 (363)
T 4ffl_A            3 TICLVGGKLQGFEAAYLSKKAGMKVVLVDKNPQAL   37 (363)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCTTCT
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCh
Confidence            69999999999999999999999999999877644

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=93.15  E-value=0.082  Score=47.55  Aligned_cols=33  Identities=15%  Similarity=0.297  Sum_probs=30.6

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            8 KAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         8 ~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      +|.|||+|-.|...|..|.+.|++|+++++.+.
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~~   34 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPD   34 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHHHTTCCEEEECSSTH
T ss_pred             eEEEEeccHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            699999999999999999999999999998754

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=93.12  E-value=0.096  Score=50.88  Aligned_cols=35  Identities=11%  Similarity=0.211  Sum_probs=32.4

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ..+|.|||+|..|..+|..|+++|++|+++++.+.
T Consensus        10 ~~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~~   44 (497)
T 2p4q_A           10 SADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQS   44 (497)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSH
T ss_pred             CCCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            36899999999999999999999999999998764

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=93.10  E-value=0.082  Score=46.63  Aligned_cols=33  Identities=15%  Similarity=0.419  Sum_probs=30.0

Q ss_pred             cEEEEcCChHHHHHHHHHHHcC-CcEEEEcccCC
Q 014324            8 KAVIVGGSIAGISCAHALLRAG-WDVVVLEKAGG   40 (426)
Q Consensus         8 ~V~IvGaG~aGl~~A~~L~~~G-~~v~v~E~~~~   40 (426)
                      +|.|||+|-.|...|..|.+.| ++|.++++.+.
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~~   35 (263)
T 1yqg_A            2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAE   35 (263)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHH
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCeEEEECCCHH
Confidence            6999999999999999999999 99999987643

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=93.06  E-value=0.09  Score=47.43  Aligned_cols=33  Identities=30%  Similarity=0.390  Sum_probs=30.5

Q ss_pred             ccEEEEc-CChHHHHHHHHHHHcCCcEEEEcccC
Q 014324            7 GKAVIVG-GSIAGISCAHALLRAGWDVVVLEKAG   39 (426)
Q Consensus         7 ~~V~IvG-aG~aGl~~A~~L~~~G~~v~v~E~~~   39 (426)
                      .+|.||| +|-.|.++|..|++.|++|.++++..
T Consensus        22 ~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~   55 (298)
T 2pv7_A           22 HKIVIVGGYGKLGGLFARYLRASGYPISILDRED   55 (298)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCc
Confidence            3799999 99999999999999999999998764

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=93.06  E-value=0.084  Score=46.68  Aligned_cols=35  Identities=26%  Similarity=0.391  Sum_probs=31.0

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCc-EEEEcccCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWD-VVVLEKAGG   40 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~-v~v~E~~~~   40 (426)
                      .++|.|||+|-.|...|..|++.|++ |.++++.+.
T Consensus        10 ~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~   45 (266)
T 3d1l_A           10 DTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEE   45 (266)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHH
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHH
Confidence            46899999999999999999999999 889987643

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=93.04  E-value=0.097  Score=43.89  Aligned_cols=34  Identities=26%  Similarity=0.490  Sum_probs=31.4

Q ss_pred             ccEEEEcC-ChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            7 GKAVIVGG-SIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGa-G~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      +.|+|.|| |-.|..++..|.++|++|+++.|++.
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~   38 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSS   38 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChh
Confidence            57999999 99999999999999999999998765

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=93.04  E-value=0.11  Score=46.11  Aligned_cols=35  Identities=14%  Similarity=0.155  Sum_probs=31.0

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAG   39 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~   39 (426)
                      ....|+|+|+|-+|.++|..|++.|.+|+|++|..
T Consensus       118 ~~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~  152 (271)
T 1nyt_A          118 PGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTV  152 (271)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCEEEEEECCH
Confidence            34579999999999999999999999999997764

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=93.01  E-value=0.088  Score=47.56  Aligned_cols=34  Identities=35%  Similarity=0.647  Sum_probs=30.2

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCC--cEEEEcccCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGW--DVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~--~v~v~E~~~~   40 (426)
                      .+|.|||||-.|...|..|+.+|+  +++++|....
T Consensus        15 ~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~   50 (303)
T 2i6t_A           15 NKITVVGGGELGIACTLAISAKGIADRLVLLDLSEG   50 (303)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC--
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcc
Confidence            689999999999999999999998  9999999775

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=93.01  E-value=0.11  Score=47.71  Aligned_cols=36  Identities=17%  Similarity=0.237  Sum_probs=31.3

Q ss_pred             CCCccEEEEcC-ChHHHHHHHHHHHcCC--cEEEEcccC
Q 014324            4 KEKGKAVIVGG-SIAGISCAHALLRAGW--DVVVLEKAG   39 (426)
Q Consensus         4 ~~~~~V~IvGa-G~aGl~~A~~L~~~G~--~v~v~E~~~   39 (426)
                      |...+|+|||+ |-.|.++|..|...|.  +++++|...
T Consensus         6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~   44 (343)
T 3fi9_A            6 LTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFA   44 (343)
T ss_dssp             SCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCH
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            44578999998 9999999999999985  899999754

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=93.00  E-value=0.099  Score=50.68  Aligned_cols=34  Identities=12%  Similarity=0.255  Sum_probs=31.5

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ++|.|||+|..|..+|..|+++|++|.++++.+.
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~~   36 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVS   36 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTH
T ss_pred             CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            5799999999999999999999999999998754

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=93.00  E-value=0.036  Score=48.09  Aligned_cols=34  Identities=24%  Similarity=0.266  Sum_probs=30.6

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      +..|+|+|+|..|..+|..|.+.|+ |+++|+++.
T Consensus         9 ~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~   42 (234)
T 2aef_A            9 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENV   42 (234)
T ss_dssp             -CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGG
T ss_pred             CCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHH
Confidence            4579999999999999999999999 999998765

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=92.99  E-value=0.066  Score=45.89  Aligned_cols=35  Identities=20%  Similarity=0.395  Sum_probs=31.8

Q ss_pred             ccEEEEcC-ChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324            7 GKAVIVGG-SIAGISCAHALLRAGWDVVVLEKAGGP   41 (426)
Q Consensus         7 ~~V~IvGa-G~aGl~~A~~L~~~G~~v~v~E~~~~~   41 (426)
                      ++|+|.|| |-.|..++..|.++|++|+++.|.+..
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~   40 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEK   40 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGG
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCccc
Confidence            57999996 999999999999999999999998653

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=92.98  E-value=0.074  Score=49.75  Aligned_cols=34  Identities=12%  Similarity=-0.029  Sum_probs=31.4

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcC-------CcEEEEcccCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAG-------WDVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G-------~~v~v~E~~~~   40 (426)
                      ++|.|||+|-.|.++|..|++.|       .+|+++++.+.
T Consensus        22 ~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~   62 (375)
T 1yj8_A           22 LKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEF   62 (375)
T ss_dssp             BCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChh
Confidence            47999999999999999999999       99999998765

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=92.89  E-value=0.12  Score=45.09  Aligned_cols=34  Identities=6%  Similarity=0.181  Sum_probs=30.8

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCC----cEEEEcccCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGW----DVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~----~v~v~E~~~~   40 (426)
                      ++|.|||+|-.|.+.|..|.++|+    +|.++++++.
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~   40 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTA   40 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHH
T ss_pred             CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHH
Confidence            479999999999999999999998    9999988654

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=92.80  E-value=0.1  Score=46.48  Aligned_cols=33  Identities=27%  Similarity=0.371  Sum_probs=29.7

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCC--cEEEEcccCC
Q 014324            8 KAVIVGGSIAGISCAHALLRAGW--DVVVLEKAGG   40 (426)
Q Consensus         8 ~V~IvGaG~aGl~~A~~L~~~G~--~v~v~E~~~~   40 (426)
                      +|.|||+|..|.++|..|++.|+  +|+++++.+.
T Consensus         3 ~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~   37 (281)
T 2g5c_A            3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPE   37 (281)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHH
T ss_pred             EEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHH
Confidence            69999999999999999999998  8999887643

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=92.79  E-value=0.22  Score=46.49  Aligned_cols=37  Identities=27%  Similarity=0.362  Sum_probs=33.1

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP   41 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   41 (426)
                      ...+|+|+|+|..|..++..+++.|++|+++|..+..
T Consensus        11 ~~~~IlIlG~G~lg~~la~aa~~lG~~viv~d~~~~~   47 (377)
T 3orq_A           11 FGATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPSEDC   47 (377)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTTC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC
Confidence            3468999999999999999999999999999987654

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=92.78  E-value=0.12  Score=47.22  Aligned_cols=35  Identities=20%  Similarity=0.458  Sum_probs=31.3

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCC--cEEEEcccC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGW--DVVVLEKAG   39 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~--~v~v~E~~~   39 (426)
                      ...+|+|||+|-.|.++|..|+.+|+  +++++|...
T Consensus        18 ~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~~   54 (331)
T 4aj2_A           18 PQNKITVVGVGAVGMACAISILMKDLADELALVDVIE   54 (331)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCCh
Confidence            45789999999999999999999997  899999864

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=92.77  E-value=0.11  Score=50.34  Aligned_cols=34  Identities=21%  Similarity=0.320  Sum_probs=31.0

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ++|.|||+|-.|..+|..|+++|++|+++++.+.
T Consensus         2 MkIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~~   35 (478)
T 1pgj_A            2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYS   35 (478)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred             CEEEEEChHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            4799999999999999999999999999988653

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=92.76  E-value=0.13  Score=45.45  Aligned_cols=35  Identities=26%  Similarity=0.344  Sum_probs=31.8

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ..+|+|+|+|-+|.++|..|++.|.+|+|+.|...
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~  152 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQGLQVSVLNRSSR  152 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            35799999999999999999999999999988765

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=92.73  E-value=0.11  Score=49.96  Aligned_cols=36  Identities=22%  Similarity=0.434  Sum_probs=32.1

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCC-cEEEEcccCCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGW-DVVVLEKAGGP   41 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~~   41 (426)
                      ..+|+|||||.+|+-+|..+.+.|. +|+++++++..
T Consensus       264 gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~~~  300 (456)
T 2vdc_G          264 GKHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRDRK  300 (456)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCST
T ss_pred             CCEEEEECCChhHHHHHHHHHHcCCCEEEEEEeCCcc
Confidence            3589999999999999999999998 49999998764

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=92.68  E-value=0.096  Score=47.52  Aligned_cols=33  Identities=30%  Similarity=0.414  Sum_probs=30.1

Q ss_pred             cEEEEcCChHHHHHHHHHHHcC--CcEEEEcccCC
Q 014324            8 KAVIVGGSIAGISCAHALLRAG--WDVVVLEKAGG   40 (426)
Q Consensus         8 ~V~IvGaG~aGl~~A~~L~~~G--~~v~v~E~~~~   40 (426)
                      +|+|||+|-.|.++|..|+++|  .+|+++|+...
T Consensus         3 kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~~   37 (309)
T 1hyh_A            3 KIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEA   37 (309)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCHH
Confidence            7999999999999999999999  68999998653

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=92.67  E-value=0.13  Score=47.24  Aligned_cols=35  Identities=31%  Similarity=0.345  Sum_probs=31.5

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ..+|.|||+|-.|.+.|..|++.|++|+++++...
T Consensus        16 ~~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~~   50 (338)
T 1np3_A           16 GKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGS   50 (338)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTC
T ss_pred             CCEEEEECchHHHHHHHHHHHHCcCEEEEEECChH
Confidence            35799999999999999999999999999988754

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=92.57  E-value=0.13  Score=46.55  Aligned_cols=36  Identities=33%  Similarity=0.428  Sum_probs=32.6

Q ss_pred             CCccEEEEcC-ChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            5 EKGKAVIVGG-SIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         5 ~~~~V~IvGa-G~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ...+|+|.|| |-.|..++..|.++|++|+++.|...
T Consensus         6 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   42 (321)
T 3vps_A            6 LKHRILITGGAGFIGGHLARALVASGEEVTVLDDLRV   42 (321)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSS
T ss_pred             CCCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCc
Confidence            3568999999 99999999999999999999999876

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=92.57  E-value=0.11  Score=46.60  Aligned_cols=36  Identities=22%  Similarity=0.307  Sum_probs=30.4

Q ss_pred             CCCccEEEEcCChHHHHHHHHHHHc--CCcEEEEcccC
Q 014324            4 KEKGKAVIVGGSIAGISCAHALLRA--GWDVVVLEKAG   39 (426)
Q Consensus         4 ~~~~~V~IvGaG~aGl~~A~~L~~~--G~~v~v~E~~~   39 (426)
                      |+.++|.|||+|-.|.++|..|++.  |.+|.++++.+
T Consensus         4 M~~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~   41 (290)
T 3b1f_A            4 MEEKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSD   41 (290)
T ss_dssp             GCCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSH
T ss_pred             cccceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCH
Confidence            3346899999999999999999988  57898888754

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=92.56  E-value=0.08  Score=48.51  Aligned_cols=35  Identities=14%  Similarity=0.112  Sum_probs=30.8

Q ss_pred             CCCccEEEEcC-ChHHHHHHHHHHHcCC-------cEEEEccc
Q 014324            4 KEKGKAVIVGG-SIAGISCAHALLRAGW-------DVVVLEKA   38 (426)
Q Consensus         4 ~~~~~V~IvGa-G~aGl~~A~~L~~~G~-------~v~v~E~~   38 (426)
                      +++++|+|+|| |-.|.+++..|...|+       +++++|..
T Consensus         3 ~~~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~   45 (329)
T 1b8p_A            3 KTPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIP   45 (329)
T ss_dssp             CCCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCS
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCC
Confidence            35579999998 9999999999999886       79999876

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=92.53  E-value=0.067  Score=50.63  Aligned_cols=30  Identities=23%  Similarity=0.265  Sum_probs=28.0

Q ss_pred             ccEEEEcCChHHHHHHHHHHH-cCCcEEEEc
Q 014324            7 GKAVIVGGSIAGISCAHALLR-AGWDVVVLE   36 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~-~G~~v~v~E   36 (426)
                      ++|+|||+|-.|.++|..|++ .|++|++++
T Consensus         3 mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~   33 (404)
T 3c7a_A            3 VKVCVCGGGNGAHTLSGLAASRDGVEVRVLT   33 (404)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTEEEEEEC
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCEEEEEe
Confidence            479999999999999999998 599999998

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=92.52  E-value=0.12  Score=47.10  Aligned_cols=36  Identities=25%  Similarity=0.420  Sum_probs=31.4

Q ss_pred             CCCccEEEEcCChHHHHHHHHHHHcCC--cEEEEcccC
Q 014324            4 KEKGKAVIVGGSIAGISCAHALLRAGW--DVVVLEKAG   39 (426)
Q Consensus         4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~--~v~v~E~~~   39 (426)
                      +++++|+|||||-.|.++|..|+..++  +++++|...
T Consensus         7 ~~~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~   44 (326)
T 2zqz_A            7 KDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFK   44 (326)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCc
Confidence            455799999999999999999998886  799999854

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=92.47  E-value=0.099  Score=46.76  Aligned_cols=32  Identities=22%  Similarity=0.276  Sum_probs=29.3

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            8 KAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         8 ~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      +|.|||+|..|...|..|.+ |++|+++++.+.
T Consensus         3 ~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~~   34 (289)
T 2cvz_A            3 KVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTFE   34 (289)
T ss_dssp             CEEEECCSTTHHHHHHHHHT-TSCEEEECSSTH
T ss_pred             eEEEEcccHHHHHHHHHHhC-CCeEEEEeCCHH
Confidence            69999999999999999999 999999987654

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=92.46  E-value=0.3  Score=46.08  Aligned_cols=38  Identities=8%  Similarity=0.121  Sum_probs=28.9

Q ss_pred             Ce-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCch
Q 014324          123 EI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLS  171 (426)
Q Consensus       123 ~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S  171 (426)
                      |+ ++.++++++++  .+  .|+     +++|++  +++|+||.|.|...
T Consensus       232 gV~~~~~~~v~~i~--~~--~v~-----~~~g~~--~~~D~vi~a~G~~~  270 (409)
T 3h8l_A          232 GIKLVHNFKIKEIR--EH--EIV-----DEKGNT--IPADITILLPPYTG  270 (409)
T ss_dssp             TCEEECSCCEEEEC--SS--EEE-----ETTSCE--EECSEEEEECCEEC
T ss_pred             CCEEEcCCceEEEC--CC--eEE-----ECCCCE--EeeeEEEECCCCCc
Confidence            67 88899998886  33  233     567775  89999999999754

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=92.37  E-value=0.14  Score=46.19  Aligned_cols=35  Identities=9%  Similarity=0.160  Sum_probs=31.1

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCC-cEEEEcccC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGW-DVVVLEKAG   39 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~   39 (426)
                      ...+|+|+|+|.+|.++|..|.+.|. +|+|+.|..
T Consensus       140 ~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~  175 (297)
T 2egg_A          140 DGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTV  175 (297)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSH
T ss_pred             CCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            34679999999999999999999998 899998764

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=92.34  E-value=0.12  Score=50.06  Aligned_cols=100  Identities=18%  Similarity=0.191  Sum_probs=71.1

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ   85 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   85 (426)
                      ..+|+|||+|+.|+-+|..|++.|.+|+++++.+.+..      .  +.+..                            
T Consensus       191 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~------~--~~~~~----------------------------  234 (484)
T 3o0h_A          191 PKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLILR------N--FDYDL----------------------------  234 (484)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST------T--SCHHH----------------------------
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCeEEEEECCCcccc------c--cCHHH----------------------------
Confidence            35899999999999999999999999999999876421      0  00000                            


Q ss_pred             ccccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEE
Q 014324           86 ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLV  164 (426)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI  164 (426)
                                             ...+.+.|.+   .|+ ++.+++|.+++.+++  .+.++   +.+|+.  +.+|.||
T Consensus       235 -----------------------~~~l~~~l~~---~Gv~i~~~~~V~~i~~~~~--~v~v~---~~~g~~--i~aD~Vi  281 (484)
T 3o0h_A          235 -----------------------RQLLNDAMVA---KGISIIYEATVSQVQSTEN--CYNVV---LTNGQT--ICADRVM  281 (484)
T ss_dssp             -----------------------HHHHHHHHHH---HTCEEESSCCEEEEEECSS--SEEEE---ETTSCE--EEESEEE
T ss_pred             -----------------------HHHHHHHHHH---CCCEEEeCCEEEEEEeeCC--EEEEE---ECCCcE--EEcCEEE
Confidence                                   0112233322   377 999999999985433  45555   567764  8999999


Q ss_pred             eccCCchhhh
Q 014324          165 AADGCLSSIR  174 (426)
Q Consensus       165 ~AdG~~S~vR  174 (426)
                      .|.|..+...
T Consensus       282 ~A~G~~p~~~  291 (484)
T 3o0h_A          282 LATGRVPNTT  291 (484)
T ss_dssp             ECCCEEECCT
T ss_pred             EeeCCCcCCC
Confidence            9999876654

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=92.31  E-value=0.15  Score=48.79  Aligned_cols=35  Identities=37%  Similarity=0.396  Sum_probs=31.6

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAG   39 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~   39 (426)
                      ....|+|+|+|..|..+|..|+..|.+|+++|+.+
T Consensus       264 ~GKtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~  298 (488)
T 3ond_A          264 AGKVAVVAGYGDVGKGCAAALKQAGARVIVTEIDP  298 (488)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            34679999999999999999999999999998764

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=92.30  E-value=0.16  Score=45.70  Aligned_cols=36  Identities=19%  Similarity=0.245  Sum_probs=32.1

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ...+|.|||+|..|..+|..|+..|.+|+++++...
T Consensus       154 ~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~~  189 (293)
T 3d4o_A          154 HGANVAVLGLGRVGMSVARKFAALGAKVKVGARESD  189 (293)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCHH
Confidence            346899999999999999999999999999998653

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=92.30  E-value=0.14  Score=46.61  Aligned_cols=35  Identities=29%  Similarity=0.475  Sum_probs=30.8

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCC--cEEEEcccC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGW--DVVVLEKAG   39 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~--~v~v~E~~~   39 (426)
                      ++++|+|||||-.|.++|..|...++  +++++|...
T Consensus         4 ~~~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~   40 (318)
T 1ez4_A            4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK   40 (318)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCc
Confidence            34799999999999999999999886  799999854

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=92.23  E-value=0.16  Score=45.81  Aligned_cols=35  Identities=17%  Similarity=0.281  Sum_probs=31.7

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAG   39 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~   39 (426)
                      ...+|.|||+|..|..+|..|...|.+|+++++..
T Consensus       156 ~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~  190 (300)
T 2rir_A          156 HGSQVAVLGLGRTGMTIARTFAALGANVKVGARSS  190 (300)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            34689999999999999999999999999999865

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=92.22  E-value=0.11  Score=46.29  Aligned_cols=34  Identities=18%  Similarity=0.351  Sum_probs=31.2

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ++|+|.|||..|..++..|.++|++|+++.|...
T Consensus         6 ~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~   39 (286)
T 3ius_A            6 GTLLSFGHGYTARVLSRALAPQGWRIIGTSRNPD   39 (286)
T ss_dssp             CEEEEETCCHHHHHHHHHHGGGTCEEEEEESCGG
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCCEEEEEEcChh
Confidence            5799999999999999999999999999988654

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=92.20  E-value=0.13  Score=45.41  Aligned_cols=36  Identities=14%  Similarity=0.160  Sum_probs=30.7

Q ss_pred             CCCccEEEEcC---ChHHHHHHHHHHHcCCcEEEEcccC
Q 014324            4 KEKGKAVIVGG---SIAGISCAHALLRAGWDVVVLEKAG   39 (426)
Q Consensus         4 ~~~~~V~IvGa---G~aGl~~A~~L~~~G~~v~v~E~~~   39 (426)
                      +....|+|.||   |-.|..+|..|+++|.+|++++|..
T Consensus         7 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~   45 (265)
T 1qsg_A            7 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND   45 (265)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESST
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEcCcH
Confidence            44456899998   5899999999999999999998865

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=92.16  E-value=0.15  Score=43.24  Aligned_cols=33  Identities=24%  Similarity=0.357  Sum_probs=30.2

Q ss_pred             cEEEEcC-ChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            8 KAVIVGG-SIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         8 ~V~IvGa-G~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      +|+|.|| |-.|..++..|.++|++|+++.|++.
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~   35 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAG   35 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSH
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCch
Confidence            6999996 99999999999999999999998754

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=92.13  E-value=6.1  Score=38.03  Aligned_cols=61  Identities=8%  Similarity=0.030  Sum_probs=40.1

Q ss_pred             HHHHHHHHhcCCCCeeEeeeeEEEEEEecCCc----eEEEEEEeccCCce-EEEeecEEEeccCCch
Q 014324          110 ADLHGLLYNALPPEIFLRGHQYLSFCISEVKT----TVTVKAKVLQTDEV-IEIKGNLLVAADGCLS  171 (426)
Q Consensus       110 ~~l~~~L~~~~~~~~i~~~~~v~~~~~~~~~~----~v~v~~~~~~~g~~-~~~~~d~vI~AdG~~S  171 (426)
                      ..|-+.|.+.+.++.|+++++|++|..++++.    .+.|++. ..+|+. .+++||.||.|.....
T Consensus       243 ~~l~~~l~~~l~~~~i~~~~~V~~I~~~~~~~~~~~~~~v~~~-~~~g~~~~~~~ad~VI~a~p~~~  308 (504)
T 1sez_A          243 QTLTDAICKDLREDELRLNSRVLELSCSCTEDSAIDSWSIISA-SPHKRQSEEESFDAVIMTAPLCD  308 (504)
T ss_dssp             HHHHHHHHTTSCTTTEETTCCEEEEEEECSSSSSSCEEEEEEB-CSSSSCBCCCEESEEEECSCHHH
T ss_pred             HHHHHHHHhhcccceEEcCCeEEEEEecCCCCcccceEEEEEc-CCCCccceeEECCEEEECCCHHH
Confidence            45666676666443399999999999765541    1555532 234532 2478999999998754

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=92.13  E-value=0.14  Score=52.14  Aligned_cols=34  Identities=29%  Similarity=0.482  Sum_probs=31.8

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      .+|.|||+|..|...|..|+++|++|+++|+++.
T Consensus       313 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~  346 (725)
T 2wtb_A          313 KKVAIIGGGLMGSGIATALILSNYPVILKEVNEK  346 (725)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCCEEEECSSHH
T ss_pred             cEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCHH
Confidence            4799999999999999999999999999998865

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=92.00  E-value=0.15  Score=47.41  Aligned_cols=40  Identities=18%  Similarity=0.361  Sum_probs=32.6

Q ss_pred             CCCCCccEEEEcC-ChHHHHHHHHHHHc-CCcEEEEcccCCC
Q 014324            2 EKKEKGKAVIVGG-SIAGISCAHALLRA-GWDVVVLEKAGGP   41 (426)
Q Consensus         2 ~~~~~~~V~IvGa-G~aGl~~A~~L~~~-G~~v~v~E~~~~~   41 (426)
                      ..|..++|+|.|| |..|..++..|.++ |++|+++.|....
T Consensus        20 ~~m~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~   61 (372)
T 3slg_A           20 GSMKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDR   61 (372)
T ss_dssp             ---CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTT
T ss_pred             cccCCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhh
Confidence            3345568999995 99999999999998 9999999997653

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2

Probab=91.96  E-value=0.21  Score=43.75  Aligned_cols=40  Identities=23%  Similarity=0.199  Sum_probs=33.0

Q ss_pred             CCCCCCccEEEEcC-ChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            1 MEKKEKGKAVIVGG-SIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         1 m~~~~~~~V~IvGa-G~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      |+.+....|+|.|| |-.|..+|..|+++|.+|+++++...
T Consensus         1 M~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~   41 (256)
T 2d1y_A            1 MGLFAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPE   41 (256)
T ss_dssp             -CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred             CCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChh
Confidence            67666677889887 56899999999999999999988754

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=91.95  E-value=0.13  Score=45.67  Aligned_cols=34  Identities=18%  Similarity=0.293  Sum_probs=30.9

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAG   39 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~   39 (426)
                      ..+|+|||+|-+|.++|..|.+.|.+|++++|..
T Consensus       129 ~~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~  162 (275)
T 2hk9_A          129 EKSILVLGAGGASRAVIYALVKEGAKVFLWNRTK  162 (275)
T ss_dssp             GSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSH
T ss_pred             CCEEEEECchHHHHHHHHHHHHcCCEEEEEECCH
Confidence            4579999999999999999999999999998764

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=91.93  E-value=0.12  Score=45.47  Aligned_cols=30  Identities=20%  Similarity=0.155  Sum_probs=27.9

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCcEEEEcc
Q 014324            8 KAVIVGGSIAGISCAHALLRAGWDVVVLEK   37 (426)
Q Consensus         8 ~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~   37 (426)
                      +|.|||+|-.|..+|..|++.|++|+++++
T Consensus         2 ~I~iIG~G~mG~~la~~l~~~g~~V~~~~~   31 (264)
T 1i36_A            2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLE   31 (264)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCT
T ss_pred             eEEEEechHHHHHHHHHHHHCCCeEEEeCC
Confidence            699999999999999999999999999765

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=91.92  E-value=0.21  Score=43.26  Aligned_cols=38  Identities=18%  Similarity=0.205  Sum_probs=32.0

Q ss_pred             CCCCCccEEEEcC-ChHHHHHHHHHHHcCCcEEEEcccC
Q 014324            2 EKKEKGKAVIVGG-SIAGISCAHALLRAGWDVVVLEKAG   39 (426)
Q Consensus         2 ~~~~~~~V~IvGa-G~aGl~~A~~L~~~G~~v~v~E~~~   39 (426)
                      |.+....|+|.|| |-.|..+|..|+++|.+|+++.|..
T Consensus         3 ~~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~   41 (244)
T 3d3w_A            3 LFLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQ   41 (244)
T ss_dssp             CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             cccCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4445567999998 7899999999999999999998754

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=91.91  E-value=0.17  Score=44.85  Aligned_cols=40  Identities=18%  Similarity=0.114  Sum_probs=33.1

Q ss_pred             CCCCCCccEEEEcC---ChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            1 MEKKEKGKAVIVGG---SIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         1 m~~~~~~~V~IvGa---G~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      |..+....|+|.||   |-.|..+|..|+++|.+|+++.|+..
T Consensus         1 M~~l~~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~~   43 (275)
T 2pd4_A            1 MGFLKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES   43 (275)
T ss_dssp             -CTTTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCCCCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            55455567999998   58999999999999999999988763

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=91.85  E-value=0.16  Score=45.92  Aligned_cols=33  Identities=24%  Similarity=0.555  Sum_probs=29.8

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCC-cEEEEcccCC
Q 014324            8 KAVIVGGSIAGISCAHALLRAGW-DVVVLEKAGG   40 (426)
Q Consensus         8 ~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~   40 (426)
                      +|+|||||-.|.++|..|+..|+ +++++|....
T Consensus         1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~~   34 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTPG   34 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCSCEEEECSSTT
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCChh
Confidence            58999999999999999999898 6999998754

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=91.81  E-value=0.16  Score=50.32  Aligned_cols=58  Identities=14%  Similarity=0.098  Sum_probs=42.1

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhc
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLN   66 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~   66 (426)
                      ..|+|||+|..|..+|..|.+.|++|+++|+++..-..  ....+.-.+...+.|++.|+
T Consensus       349 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~d~~~~~~--~~~~i~gD~t~~~~L~~agi  406 (565)
T 4gx0_A          349 ELIFIIGHGRIGCAAAAFLDRKPVPFILIDRQESPVCN--DHVVVYGDATVGQTLRQAGI  406 (565)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCSSCC--SSCEEESCSSSSTHHHHHTT
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECChHHHhh--cCCEEEeCCCCHHHHHhcCc
Confidence            57999999999999999999999999999999875431  11222222333345666655

>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*

Probab=91.80  E-value=0.18  Score=47.62  Aligned_cols=35  Identities=26%  Similarity=0.300  Sum_probs=31.5

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ...+|+|+|+|..|..++..+++.|++|++++ .+.
T Consensus        23 ~~~~I~ilGgG~lg~~l~~aa~~lG~~v~~~d-~~~   57 (403)
T 3k5i_A           23 NSRKVGVLGGGQLGRMLVESANRLNIQVNVLD-ADN   57 (403)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHTCEEEEEE-STT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE-CCC
Confidence            35689999999999999999999999999999 543

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=91.80  E-value=0.15  Score=45.69  Aligned_cols=36  Identities=22%  Similarity=0.221  Sum_probs=32.0

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCC-cEEEEcccCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGW-DVVVLEKAGG   40 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~   40 (426)
                      ...+|+|||+|-.|..+|..|++.|+ +++|+|...-
T Consensus        35 ~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~V   71 (292)
T 3h8v_A           35 RTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKV   71 (292)
T ss_dssp             GGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBC
T ss_pred             hCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCcc
Confidence            34689999999999999999999997 7999998764

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=91.78  E-value=0.19  Score=45.03  Aligned_cols=34  Identities=21%  Similarity=0.430  Sum_probs=31.2

Q ss_pred             ccEEEEcC-ChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            7 GKAVIVGG-SIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGa-G~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ++|+|.|| |..|..++..|.++|++|+++-|++.
T Consensus         1 MkILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~   35 (298)
T 4b4o_A            1 MRVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPG   35 (298)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            46999999 99999999999999999999988765

>2we8_A Xanthine dehydrogenase; oxidoreductase; 2.30A {Mycobacterium smegmatis} PDB: 2we7_A

Probab=91.74  E-value=0.19  Score=46.92  Aligned_cols=38  Identities=13%  Similarity=0.090  Sum_probs=34.4

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP   42 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~   42 (426)
                      ...+++|+|||..|.++|..++..|++|+|+|.++...
T Consensus       203 P~~rL~IfGAGhva~ala~~a~~lg~~V~v~D~R~~~~  240 (386)
T 2we8_A          203 PRPRMLVFGAIDFAAAVAQQGAFLGYRVTVCDARPVFA  240 (386)
T ss_dssp             CCCEEEEECCSTHHHHHHHHHHHTTCEEEEEESCTTTS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhc
Confidence            45689999999999999999999999999999887753

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=91.71  E-value=0.18  Score=46.24  Aligned_cols=38  Identities=16%  Similarity=0.170  Sum_probs=31.7

Q ss_pred             CCCccEEEEcC-ChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324            4 KEKGKAVIVGG-SIAGISCAHALLRAGWDVVVLEKAGGP   41 (426)
Q Consensus         4 ~~~~~V~IvGa-G~aGl~~A~~L~~~G~~v~v~E~~~~~   41 (426)
                      .....|+|.|| |-.|..++..|.++|++|+++.|....
T Consensus        17 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~   55 (347)
T 4id9_A           17 RGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSG   55 (347)
T ss_dssp             ----CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCS
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCC
Confidence            34578999999 999999999999999999999998753

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=91.66  E-value=0.17  Score=45.82  Aligned_cols=34  Identities=24%  Similarity=0.405  Sum_probs=30.8

Q ss_pred             ccEEEEcC-ChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            7 GKAVIVGG-SIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGa-G~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ..|+|.|| |-.|..++..|.++|++|+++.|...
T Consensus        12 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~   46 (318)
T 2r6j_A           12 SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNS   46 (318)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTC
T ss_pred             CeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCC
Confidence            37999997 99999999999999999999998764

>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}

Probab=91.66  E-value=0.13  Score=47.35  Aligned_cols=39  Identities=13%  Similarity=0.326  Sum_probs=30.1

Q ss_pred             CCCCCCccEEEEcC-ChHHHHHHHHHHHcC--CcEEEEcccC
Q 014324            1 MEKKEKGKAVIVGG-SIAGISCAHALLRAG--WDVVVLEKAG   39 (426)
Q Consensus         1 m~~~~~~~V~IvGa-G~aGl~~A~~L~~~G--~~v~v~E~~~   39 (426)
                      ||.+..++|+|.|| |..|..++..|.++|  ++|+++++..
T Consensus        19 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~   60 (346)
T 4egb_A           19 YFQSNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALT   60 (346)
T ss_dssp             -----CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCC
T ss_pred             ccccCCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEeccc
Confidence            44456678999999 999999999999999  7787887765

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=91.62  E-value=0.15  Score=44.85  Aligned_cols=37  Identities=19%  Similarity=0.170  Sum_probs=31.4

Q ss_pred             CCCccEEEEcC-C-hHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            4 KEKGKAVIVGG-S-IAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         4 ~~~~~V~IvGa-G-~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      +....|+|.|| | -.|..+|..|+++|.+|+++++...
T Consensus        20 l~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~   58 (266)
T 3o38_A           20 LKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHER   58 (266)
T ss_dssp             TTTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHH
Confidence            44567999999 7 4999999999999999999987653

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=91.61  E-value=0.18  Score=42.89  Aligned_cols=33  Identities=21%  Similarity=0.337  Sum_probs=30.2

Q ss_pred             cEEEEcC-ChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            8 KAVIVGG-SIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         8 ~V~IvGa-G~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      +|+|.|| |-.|..++..|.++|++|+++.|...
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~   35 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQ   35 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCCEEEEEEeccc
Confidence            5999998 99999999999999999999988753

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=91.54  E-value=0.13  Score=45.67  Aligned_cols=35  Identities=17%  Similarity=0.177  Sum_probs=31.7

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCC-cEEEEcccCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGW-DVVVLEKAGG   40 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~   40 (426)
                      ..+|+|+|+|-+|.++|..|++.|. +|+|+.|...
T Consensus       117 ~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~  152 (277)
T 3don_A          117 DAYILILGAGGASKGIANELYKIVRPTLTVANRTMS  152 (277)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGG
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHH
Confidence            4579999999999999999999998 8999988765

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=91.53  E-value=0.16  Score=51.79  Aligned_cols=34  Identities=18%  Similarity=0.208  Sum_probs=31.8

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      .+|.|||+|..|...|..|+++|++|+++|+++.
T Consensus       315 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~  348 (715)
T 1wdk_A          315 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINEH  348 (715)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred             CEEEEECCChhhHHHHHHHHhCCCEEEEEECCHH
Confidence            4799999999999999999999999999998865

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=91.52  E-value=0.15  Score=45.23  Aligned_cols=35  Identities=20%  Similarity=0.238  Sum_probs=31.3

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ..+|+|+|+|-+|.++|..|++.|.+|+|+.|...
T Consensus       119 ~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~~  153 (272)
T 1p77_A          119 NQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFS  153 (272)
T ss_dssp             TCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHH
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            45799999999999999999999999999987653

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=91.49  E-value=0.14  Score=48.09  Aligned_cols=35  Identities=29%  Similarity=0.269  Sum_probs=31.7

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAG   39 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~   39 (426)
                      ....|+|||.|+.|..+|..|...|.+|+++|+.+
T Consensus       219 ~GktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp  253 (435)
T 3gvp_A          219 GGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDP  253 (435)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             cCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            34689999999999999999999999999999765

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=91.46  E-value=0.15  Score=44.84  Aligned_cols=34  Identities=12%  Similarity=0.081  Sum_probs=30.6

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ++|.|||+|-.|...|..|.+.|.+|.++++.+.
T Consensus         4 m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~~   37 (259)
T 2ahr_A            4 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLE   37 (259)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHH
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEECCCHH
Confidence            5799999999999999999999999999987653

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=91.44  E-value=0.2  Score=48.39  Aligned_cols=36  Identities=31%  Similarity=0.268  Sum_probs=32.1

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ....|+|||+|..|..+|..|+..|.+|+++|+.+.
T Consensus       273 ~GktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~  308 (494)
T 3ce6_A          273 GGKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPI  308 (494)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CcCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            345799999999999999999999999999998654

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=91.40  E-value=0.21  Score=43.88  Aligned_cols=40  Identities=23%  Similarity=0.182  Sum_probs=34.0

Q ss_pred             CCCCCCccEEEEcCC---hHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            1 MEKKEKGKAVIVGGS---IAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         1 m~~~~~~~V~IvGaG---~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      |++.+...++|-||+   =.|.+.|..|+++|.+|++.+|+..
T Consensus         1 M~~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~   43 (256)
T 4fs3_A            1 MLNLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKER   43 (256)
T ss_dssp             CCCCTTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CcCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHH
Confidence            788888889999964   3689999999999999999988753

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=91.38  E-value=0.2  Score=45.76  Aligned_cols=35  Identities=17%  Similarity=0.330  Sum_probs=31.7

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCC-cEEEEcccCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGW-DVVVLEKAGG   40 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~   40 (426)
                      ..+|+|||+|-.|..+|..|++.|+ +++|+|...-
T Consensus        34 ~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~V   69 (340)
T 3rui_A           34 NTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTV   69 (340)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCBC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCEe
Confidence            5689999999999999999999998 6889988764

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=91.30  E-value=0.12  Score=46.42  Aligned_cols=33  Identities=33%  Similarity=0.325  Sum_probs=30.0

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ++|.|||+|-.|...|..|.+.|++|++++ ++.
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~~   36 (295)
T 1yb4_A            4 MKLGFIGLGIMGSPMAINLARAGHQLHVTT-IGP   36 (295)
T ss_dssp             CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SSC
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CHH
Confidence            479999999999999999999999999998 543

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*

Probab=91.15  E-value=0.22  Score=46.00  Aligned_cols=36  Identities=25%  Similarity=0.432  Sum_probs=30.4

Q ss_pred             CCccEEEEcC-ChHHHHHHHHHHHcC-CcEEEEcccCC
Q 014324            5 EKGKAVIVGG-SIAGISCAHALLRAG-WDVVVLEKAGG   40 (426)
Q Consensus         5 ~~~~V~IvGa-G~aGl~~A~~L~~~G-~~v~v~E~~~~   40 (426)
                      ..+.|+|.|| |..|..++..|.++| .+|+++.+...
T Consensus        45 ~~~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~   82 (357)
T 2x6t_A           45 EGRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKD   82 (357)
T ss_dssp             ---CEEEETTTSHHHHHHHHHHHHTTCCCEEEEECCSS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCcEEEEEecCCC
Confidence            4468999999 999999999999999 99999988654

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=91.15  E-value=0.19  Score=43.95  Aligned_cols=35  Identities=23%  Similarity=0.261  Sum_probs=31.4

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCC-cEEEEcccCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGW-DVVVLEKAGG   40 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~   40 (426)
                      ..+|+|||+|-.|..+|..|++.|+ +++|+|...-
T Consensus        28 ~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~v   63 (251)
T 1zud_1           28 DSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDV   63 (251)
T ss_dssp             TCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCBC
T ss_pred             cCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCCc
Confidence            4689999999999999999999998 7889988764

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=90.49  E-value=0.04  Score=46.58  Aligned_cols=35  Identities=26%  Similarity=0.347  Sum_probs=31.7

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      .++|.|||+|-.|.++|..|.+.|++|++++|...
T Consensus        19 ~~~I~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~   53 (201)
T 2yjz_A           19 QGVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQ   53 (201)
Confidence            45799999999999999999999999999988765

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=91.08  E-value=0.21  Score=44.00  Aligned_cols=39  Identities=23%  Similarity=0.393  Sum_probs=30.2

Q ss_pred             CCCCCccEEEEcC-ChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            2 EKKEKGKAVIVGG-SIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         2 ~~~~~~~V~IvGa-G~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      |.+....|+|.|| |-.|.++|..|+++|.+|+++++...
T Consensus        23 m~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~   62 (260)
T 3gem_A           23 MTLSSAPILITGASQRVGLHCALRLLEHGHRVIISYRTEH   62 (260)
T ss_dssp             ----CCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCChH
Confidence            4445567888887 56899999999999999999998764

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=91.08  E-value=0.22  Score=44.37  Aligned_cols=39  Identities=23%  Similarity=0.143  Sum_probs=31.3

Q ss_pred             CCCCCCccEEEEcC-Ch--HHHHHHHHHHHcCCcEEEEcccC
Q 014324            1 MEKKEKGKAVIVGG-SI--AGISCAHALLRAGWDVVVLEKAG   39 (426)
Q Consensus         1 m~~~~~~~V~IvGa-G~--aGl~~A~~L~~~G~~v~v~E~~~   39 (426)
                      |+.+....|+|.|| |.  .|..+|..|+++|.+|+++.+..
T Consensus        21 M~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~   62 (280)
T 3nrc_A           21 MGFLAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQ   62 (280)
T ss_dssp             -CTTTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTT
T ss_pred             ccccCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCch
Confidence            44455567888886 45  89999999999999999998876

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=91.07  E-value=0.24  Score=43.40  Aligned_cols=33  Identities=30%  Similarity=0.360  Sum_probs=30.4

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCC-cEEEEcccCC
Q 014324            8 KAVIVGGSIAGISCAHALLRAGW-DVVVLEKAGG   40 (426)
Q Consensus         8 ~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~   40 (426)
                      +|+|+|+|-+|.+++..|.+.|. +|+|+.|...
T Consensus       110 ~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~  143 (253)
T 3u62_A          110 PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIE  143 (253)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHH
T ss_pred             eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHH
Confidence            89999999999999999999998 8999988754

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=91.04  E-value=0.2  Score=44.88  Aligned_cols=34  Identities=21%  Similarity=0.162  Sum_probs=29.8

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCC--cEEEEcccCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGW--DVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~--~v~v~E~~~~   40 (426)
                      ++|.|||+|-.|.++|+.|..++.  +++++|....
T Consensus         1 MKV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~~~   36 (294)
T 2x0j_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAED   36 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCCC
Confidence            479999999999999999998885  7999998653

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=90.99  E-value=0.3  Score=44.76  Aligned_cols=35  Identities=11%  Similarity=0.051  Sum_probs=32.0

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ..+|.|||.|-.|..+|..|+..|++|+++++...
T Consensus       150 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~  184 (334)
T 2dbq_A          150 GKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRK  184 (334)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CCEEEEEccCHHHHHHHHHHHhCCCEEEEECCCcc
Confidence            45799999999999999999999999999998764

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=90.95  E-value=0.27  Score=44.20  Aligned_cols=36  Identities=25%  Similarity=0.221  Sum_probs=30.8

Q ss_pred             CCCccEEEEcCC---hHHHHHHHHHHHcCCcEEEEcccC
Q 014324            4 KEKGKAVIVGGS---IAGISCAHALLRAGWDVVVLEKAG   39 (426)
Q Consensus         4 ~~~~~V~IvGaG---~aGl~~A~~L~~~G~~v~v~E~~~   39 (426)
                      +....|+|.||+   -.|..+|..|+++|.+|++.++..
T Consensus        28 l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~   66 (296)
T 3k31_A           28 MEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSE   66 (296)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             cCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCCh
Confidence            445679999986   789999999999999999998874

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=90.88  E-value=0.23  Score=46.82  Aligned_cols=35  Identities=23%  Similarity=0.370  Sum_probs=30.8

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCC-cEEEEcccC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGW-DVVVLEKAG   39 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~   39 (426)
                      ....|+|||+|..|..+|..|...|. +|+++++..
T Consensus       166 ~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~  201 (404)
T 1gpj_A          166 HDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTY  201 (404)
T ss_dssp             TTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSH
T ss_pred             cCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            34679999999999999999999998 899988754

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=90.87  E-value=0.18  Score=47.84  Aligned_cols=34  Identities=21%  Similarity=0.305  Sum_probs=31.8

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      .+.-|||.|-.|+.+|..|+++|++|+++|+++.
T Consensus        12 ~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~   45 (431)
T 3ojo_A           12 SKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQ   45 (431)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            4788999999999999999999999999999875

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=90.86  E-value=0.29  Score=42.26  Aligned_cols=37  Identities=22%  Similarity=0.270  Sum_probs=31.7

Q ss_pred             CCCCccEEEEcC-ChHHHHHHHHHHHcCCcEEEEcccC
Q 014324            3 KKEKGKAVIVGG-SIAGISCAHALLRAGWDVVVLEKAG   39 (426)
Q Consensus         3 ~~~~~~V~IvGa-G~aGl~~A~~L~~~G~~v~v~E~~~   39 (426)
                      .+....|+|.|| |-.|..+|..|+++|.+|++++|..
T Consensus         4 ~~~~~~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~   41 (244)
T 1cyd_A            4 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTN   41 (244)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            355567999998 7899999999999999999998754

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=90.77  E-value=0.25  Score=43.64  Aligned_cols=39  Identities=15%  Similarity=0.121  Sum_probs=31.5

Q ss_pred             CCC-CCCccEEEEcC---ChHHHHHHHHHHHcCCcEEEEcccC
Q 014324            1 MEK-KEKGKAVIVGG---SIAGISCAHALLRAGWDVVVLEKAG   39 (426)
Q Consensus         1 m~~-~~~~~V~IvGa---G~aGl~~A~~L~~~G~~v~v~E~~~   39 (426)
                      ||. +....|+|.||   |-.|.++|..|+++|.+|++++++.
T Consensus         1 Mm~~l~~k~vlVTGa~~s~gIG~aia~~l~~~G~~V~~~~r~~   43 (269)
T 2h7i_A            1 MTGLLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDR   43 (269)
T ss_dssp             -CCTTTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEECSC
T ss_pred             CccccCCCEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecCh
Confidence            443 45567999995   7889999999999999999998764

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=90.77  E-value=0.26  Score=43.47  Aligned_cols=32  Identities=34%  Similarity=0.451  Sum_probs=29.8

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCcEEEEcccC
Q 014324            8 KAVIVGGSIAGISCAHALLRAGWDVVVLEKAG   39 (426)
Q Consensus         8 ~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~   39 (426)
                      +|+|||+|-+|.+.|..|.+.|.+|++++|..
T Consensus       118 ~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~  149 (263)
T 2d5c_A          118 PALVLGAGGAGRAVAFALREAGLEVWVWNRTP  149 (263)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             eEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            89999999999999999999999999998764

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=90.74  E-value=0.28  Score=45.40  Aligned_cols=33  Identities=18%  Similarity=0.099  Sum_probs=30.2

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcc
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEK   37 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~   37 (426)
                      ....|+|+|+|-.|..+|..|.+.|.+|++.|+
T Consensus       172 ~GktV~V~G~G~VG~~~A~~L~~~GakVvv~D~  204 (364)
T 1leh_A          172 EGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDV  204 (364)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             CcCEEEEECchHHHHHHHHHHHHCCCEEEEEcC
Confidence            456899999999999999999999999999884

>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*

Probab=90.71  E-value=0.22  Score=46.27  Aligned_cols=34  Identities=18%  Similarity=0.337  Sum_probs=31.9

Q ss_pred             CccEEEEcC-ChHHHHHHHHHHHcCC---cEEEEcccC
Q 014324            6 KGKAVIVGG-SIAGISCAHALLRAGW---DVVVLEKAG   39 (426)
Q Consensus         6 ~~~V~IvGa-G~aGl~~A~~L~~~G~---~v~v~E~~~   39 (426)
                      ..+|+|||| |.+|+.++..+...|.   +|+++|.+.
T Consensus       214 ~~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D~~~  251 (394)
T 2qrj_A          214 KPTVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKE  251 (394)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEECHHH
T ss_pred             CCeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEeeccc
Confidence            568999999 9999999999999998   999999987

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=90.66  E-value=0.19  Score=45.67  Aligned_cols=32  Identities=16%  Similarity=0.162  Sum_probs=29.3

Q ss_pred             cEEEEcC-ChHHHHHHHHHHHcC--CcEEEEcccC
Q 014324            8 KAVIVGG-SIAGISCAHALLRAG--WDVVVLEKAG   39 (426)
Q Consensus         8 ~V~IvGa-G~aGl~~A~~L~~~G--~~v~v~E~~~   39 (426)
                      +|+|||| |-.|.++|..|+..|  .+++++|...
T Consensus         2 KI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~   36 (314)
T 1mld_A            2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH   36 (314)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCc
Confidence            7999998 999999999999988  5899999876

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=90.60  E-value=0.25  Score=45.50  Aligned_cols=35  Identities=17%  Similarity=0.121  Sum_probs=30.5

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      .-.|+|+|+|+.|++++..++..|.+|+++++.+.
T Consensus       177 g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~  211 (348)
T 3two_A          177 GTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEH  211 (348)
T ss_dssp             TCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSST
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            34799999999999999999889999999887664

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=90.55  E-value=0.28  Score=44.38  Aligned_cols=34  Identities=15%  Similarity=0.198  Sum_probs=30.7

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCC-cEEEEcccC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGW-DVVVLEKAG   39 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~   39 (426)
                      ..+|+|+|+|-+|.++|..|++.|. +|+|+.|..
T Consensus       154 gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~  188 (315)
T 3tnl_A          154 GKKMTICGAGGAATAICIQAALDGVKEISIFNRKD  188 (315)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSS
T ss_pred             CCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCC
Confidence            4579999999999999999999998 899998874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	426
d2voua2	128	d.16.1.2 (A:164-291) Dihydroxypyridine hydroxylase	5e-20
d1pn0a1	360	c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {So	1e-14
d1k0ia1	292	c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydr	2e-14
d1k0ia1	292	c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydr	5e-04
d2voua1	265	c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydr	6e-11
d2voua1	265	c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydr	5e-06
d3c96a1	288	c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Ps	6e-10
d3c96a1	288	c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Ps	2e-09
d1c0pa1	268	c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxida	2e-09
d2i0za1	251	c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {B	5e-09
d2gf3a1	281	c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bac	3e-08
d2dw4a2	449	c.3.1.2 (A:274-654,A:764-831) Lysine-specific hist	5e-08
d1ryia1	276	c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {	8e-08
d1b5qa1	347	c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Mai	1e-07
d2ivda1	347	c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen ox	6e-07
d1pj5a2	305	c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine ox	7e-07
d2v5za1	383	c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {H	8e-07
d2gqfa1	253	c.3.1.8 (A:1-194,A:343-401) Hypothetical protein H	1e-06
d2iida1	370	c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {M	1e-06
d1seza1	373	c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen ox	2e-06
d2bi7a1	314	c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mu	3e-06
d1w4xa1	298	c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxy	8e-06
d1kifa1	246	c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N	1e-05
d1i8ta1	298	c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mu	1e-05
d1d5ta1	336	c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di	1e-05
d2bs2a2	336	c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wo	1e-05
d1d4ca2	322	c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (	2e-05
d2bcgg1	297	c.3.1.3 (G:5-301) Guanine nucleotide dissociation	2e-05
d1qo8a2	317	c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (	2e-05
d2f5va1	379	c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {W	3e-05
d1y0pa2	308	c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (	3e-05
d1neka2	330	c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase	5e-05
d1n4wa1	367	c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of	5e-05
d3coxa1	370	c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of	4e-04
d1vdca1	192	c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase	5e-04
d2gmha1	380	c.3.1.2 (A:4-236,A:336-482) Electron transfer flav	5e-04
d2gv8a1	335	c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monox	7e-04
d1rp0a1	278	c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi	8e-04
d1chua2	305	c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {E	0.001
d1cjca2	230	c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase	0.001
d1m6ia1	213	c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing f	0.001
d1fcda1	186	c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulf	0.002
d1gtea4	196	c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine de	0.002
d1jnra2	356	c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reduct	0.002
d1fl2a1	184	c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide	0.002
d3lada1	229	c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehyd	0.002
d2gjca1	311	c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Th	0.002
d1nhpa1	198	c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enter	0.003
d1d7ya1	183	c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredo	0.003
d1kf6a2	311	c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Es	0.004
d1trba1	190	c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase	0.004

>d2voua2 d.16.1.2 (A:164-291) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} Length = 128

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: PHBH-like
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

 Score = 83.5 bits (206), Expect = 5e-20
 Identities = 27/135 (20%), Positives = 45/135 (33%), Gaps = 28/135 (20%)

Query: 184 RYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYEL------LN 237
            Y+GY  WRGVL    + D         V+        + L    H + Y +       +
Sbjct: 2   TYAGYVTWRGVLQPGEVAD--------DVWNYFNDKFTYGLLDDGHLIAYPIPGRENAES 53

Query: 238 KRLNWVWYINQPEPIMKGNSVT-------------MRVSNDMIKNMHEEAEKVWLPEFVK 284
            RLN+ WY N  E       +T               ++   ++  H + E      F  
Sbjct: 54  PRLNFQWYWNVAEGPDLDELMTDVRGIRLPTSVHNNSLNPHNLRQFHSKGES-LFKPFRD 112

Query: 285 VIKETKEPFINAMYD 299
           ++     PF+  + D
Sbjct: 113 LVLNASSPFVTVVAD 127

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} Length = 360

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

 Score = 72.4 bits (176), Expect = 1e-14
 Identities = 49/376 (13%), Positives = 93/376 (24%), Gaps = 72/376 (19%)

Query: 10  VIVGGSIAGISCAHALL-----RAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSW 64
           +IVG   AG+  A  L      +    V +++K          G   GL       +++ 
Sbjct: 11  LIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTK---VYNGQADGLQCRTLESLKNL 67

Query: 65  LNGRPHLLHLATVPLTIDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI 124
                 +L  A    TI              L   D              L   +   ++
Sbjct: 68  -GLADKILSEANDMSTI-------------ALYNPDENGHIRRTDRIPDTLPGISRYHQV 113

Query: 125 FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSIRQSFLSDFKLR 184
            L   +     +  +      + KV +     +++ +   A D     +  +      LR
Sbjct: 114 VLHQGRIERRILDSIAEISDTRIKVERPLIPEKMEIDSSKAEDPEAYPVTMT------LR 167

Query: 185 YSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELLNKRLNWVW 244
           Y        +      E+         +     +   + L  G  +   E ++ +     
Sbjct: 168 YMSEDESTPLQFGHKTENGLF---RSNLQTQEEEDANYRLPEGKEAGEIETVHCKYVIGC 224

Query: 245 YINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDPLK 304
                          +                                           K
Sbjct: 225 DGGHSWVRRTLGFEMIVTE----------------------------------------K 244

Query: 305 QIFWSNVVLIGDAAHPTTPHGLRSTNMSILDAMVLG-KSLEKWGVEGLLSALEEYQTVRL 363
                 V + GDA H  +P   +  N S++D   LG K             L+ Y+  R 
Sbjct: 245 FSKDERVFIAGDACHTHSPKAGQGMNTSMMDTYNLGWKLGLVLTGRAKRDILKTYEEERQ 304

Query: 364 PVTSKQVLHSRRLGRI 379
           P     +    +  R+
Sbjct: 305 PFAQALIDFDHQFSRL 320

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} Length = 292

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 70.7 bits (172), Expect = 2e-14
 Identities = 30/242 (12%), Positives = 63/242 (26%), Gaps = 11/242 (4%)

Query: 6   KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWL 65
           K +  I+G   +G+     L +AG D V+LE+   P           L++    +++   
Sbjct: 2   KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQ-TPDYVLGRIRAGVLEQGMVDLLREA- 59

Query: 66  NGRPHLLHLATVPLTIDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNAL---PP 122
            G    +    +     +       +                   ++   L  A      
Sbjct: 60  -GVDRRMARDGLVHEGVEIAFAGQRRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGA 118

Query: 123 EIFLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSIRQSFLSDFK 182
               +  +     +   +  VT +       E + +  + +   DG     RQS  ++  
Sbjct: 119 TTVYQAAEVRLHDLQGERPYVTFER----DGERLRLDCDYIAGCDGFHGISRQSIPAERM 174

Query: 183 LRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELLNKRLNW 242
                + A              +      V       L      G   +        L  
Sbjct: 175 QHGRLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKA-YREGRGELLERYSAICLRR 233

Query: 243 VW 244
           +W
Sbjct: 234 IW 235

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} Length = 292

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 39.2 bits (90), Expect = 5e-04
 Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 2/90 (2%)

Query: 305 QIFWSNVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTVRLP 364
           ++    + L GDAAH   P G +  N++  D   L + L K   EG    LE Y  + L 
Sbjct: 173 RMQHGRLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKAYREGRGELLERYSAICLR 232

Query: 365 VTSKQVLHSRRLGRIKQGLALPDREPFNTK 394
              K    S  +  +      PD + F+ +
Sbjct: 233 RIWKAERFSWWMTSV--LHRFPDTDAFSQR 260

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} Length = 265

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

 Score = 60.5 bits (145), Expect = 6e-11
 Identities = 27/139 (19%), Positives = 51/139 (36%), Gaps = 10/139 (7%)

Query: 8   KAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNG 67
           +  +VGGSI+G++ A  L  AG DV V E++  P   S  G G+ +       +      
Sbjct: 6   RIAVVGGSISGLTAALMLRDAGVDVDVYERS--PQPLSGFGTGIVVQPELVHYLLEQ--- 60

Query: 68  RPHLLHLATVPLTIDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEIFLR 127
              L  ++    +++   A    +V          ++R   +  ++G LY    PE +  
Sbjct: 61  GVELDSISVPSSSMEYVDALTGERVGS-----VPADWRFTSYDSIYGGLYELFGPERYHT 115

Query: 128 GHQYLSFCISEVKTTVTVK 146
               +          +   
Sbjct: 116 SKCLVGLSQDSETVQMRFS 134

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} Length = 265

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

 Score = 45.5 bits (106), Expect = 5e-06
 Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 2/85 (2%)

Query: 297 MYDCDPLKQIFWSNVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALE 356
           +   + + ++    V+LIGDAA    PH       +  DA  L +   K     L  +L+
Sbjct: 158 LLGIETVDRMVHGRVLLIGDAAVTPRPHAAAGGAKASDDARTLAEVFTK--NHDLRGSLQ 215

Query: 357 EYQTVRLPVTSKQVLHSRRLGRIKQ 381
            ++T +L      +   +++    Q
Sbjct: 216 SWETRQLQQGHAYLNKVKKMASRLQ 240

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} Length = 288

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 57.8 bits (138), Expect = 6e-10
 Identities = 34/191 (17%), Positives = 59/191 (30%), Gaps = 14/191 (7%)

Query: 8   KAVIVGGSIAGISCAHALLRAGW-DVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLN 66
             +I G  I G+SCA AL +AG   V +LE +       P G G+ +   A   +     
Sbjct: 3   DILIAGAGIGGLSCALALHQAGIGKVTLLESSSEI---RPLGVGINIQPAAVEALAEL-G 58

Query: 67  GRPHLLHLATVPLTIDQNQATDNAKVTRTLARDDNFN------FRAAHWADLHGLLYNAL 120
             P L   A     +     +     +     +           R      L   +   L
Sbjct: 59  LGPALAATAIPTHELRYIDQSGATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERL 118

Query: 121 PPEIFLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSIRQSFLSD 180
             +    G         + +  +  +       +   +  ++LV ADG  S++R     D
Sbjct: 119 GQQAVRTGLGVERIEERDGRVLIGARDG---HGKPQALGADVLVGADGIHSAVRAHLHPD 175

Query: 181 FKLRYSGYCAW 191
            +        W
Sbjct: 176 QRPLRDPLPHW 186

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} Length = 288

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 55.9 bits (133), Expect = 2e-09
 Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 2/93 (2%)

Query: 297 MYDCDPLKQIFWSNVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALE 356
               DPL       + L+GDAAH   P G    + +ILD + L  +L +     + +AL 
Sbjct: 177 RPLRDPLPHWGRGRITLLGDAAHLMYPMGANGASQAILDGIELAAALARNA--DVAAALR 234

Query: 357 EYQTVRLPVTSKQVLHSRRLGRIKQGLALPDRE 389
           EY+  R P  +K +L +R   + +   A   + 
Sbjct: 235 EYEEARRPTANKIILANREREKEEWAAASRPKT 267

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} Length = 268

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

 Score = 56.2 bits (134), Expect = 2e-09
 Identities = 27/186 (14%), Positives = 60/186 (32%), Gaps = 14/186 (7%)

Query: 1   MEKKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGL--------- 51
           +    + + V++G  + G+S A  L R G+ V +L +       S T A           
Sbjct: 1   LMMHSQKRVVVLGSGVIGLSSALILARKGYSVHILARDLPEDVSSQTFASPWAGANWTPF 60

Query: 52  GLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ----ATDNAKVTRTLARDDNFNFRAA 107
                  R  +   +     + L      +        A +   +     +D   N+R  
Sbjct: 61  MTLTDGPRQAKWEESTFKKWVELVPTGHAMWLKGTRRFAQNEDGLLGHWYKDITPNYRPL 120

Query: 108 HWADLHGLLYNALPPEIFLRGHQYLSFCISEVKTT-VTVKAKVLQTDEVIEIKGNLLVAA 166
             ++            + +   +Y  +   E++    T + + + + E      +L+V A
Sbjct: 121 PSSECPPGAIGVTYDTLSVHAPKYCQYLARELQKLGATFERRTVTSLEQAFDGADLVVNA 180

Query: 167 DGCLSS 172
            G  + 
Sbjct: 181 TGLGAK 186

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} Length = 251

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

 Score = 54.3 bits (129), Expect = 5e-09
 Identities = 23/162 (14%), Positives = 53/162 (32%)

Query: 10  VIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRP 69
           +++GG  +G+  A      G +V++L+K            G   +   +  +   +   P
Sbjct: 6   IVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIP 65

Query: 70  HLLHLATVPLTIDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEIFLRGH 129
                     +I  N+          +   +  + R    ++    + +AL   +   G 
Sbjct: 66  GNGRFLYSAFSIFNNEDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGV 125

Query: 130 QYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLS 171
           +  +    E       + K +       ++ N +V A G  S
Sbjct: 126 KIRTNTPVETIEYENGQTKAVILQTGEVLETNHVVIAVGGKS 167

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} Length = 281

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

 Score = 52.4 bits (124), Expect = 3e-08
 Identities = 9/51 (17%), Positives = 20/51 (39%)

Query: 9  AVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQR 59
           ++VG    G++  + L + G   ++++    P T         + R A  
Sbjct: 6  VIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGSHHGDTRIIRHAYG 56

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 449

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.2 bits (123), Expect = 5e-08
 Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 7/75 (9%)

Query: 4  KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKA---GGPPTGSPTGAGLGLDRPAQRI 60
          K+ GK +I+G  ++G++ A  L   G DV +LE     GG    +        D  A  +
Sbjct: 3  KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGG-RVATFRKGNYVADLGAMVV 61

Query: 61 IQSWLNGRPHLLHLA 75
                G   +  ++
Sbjct: 62 ---TGLGGNPMAVVS 73

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} Length = 276

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

 Score = 50.9 bits (120), Expect = 8e-08
 Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 2/70 (2%)

Query: 4  KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQS 63
          K   +AV++GG I G + A+ L +   +  + E   G   G  T A  G+        + 
Sbjct: 2  KRHYEAVVIGGGIIGSAIAYYLAKENKNTALFES--GTMGGRTTSAAAGMLGAHAECEER 59

Query: 64 WLNGRPHLLH 73
                 +  
Sbjct: 60 DAFFDFAMHS 69

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

 Score = 51.1 bits (120), Expect = 1e-07
 Identities = 35/336 (10%), Positives = 89/336 (26%), Gaps = 36/336 (10%)

Query: 8   KAVIVGGSIAGISCAHALLRAGW-DVVVLEKAG--GPPTGSPTGAGLGLDRPAQRIIQSW 64
           + ++VG  ++GIS A  L  AG  D+++LE     G        AG+ ++  A  +    
Sbjct: 2   RVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAGINVELGANWVE--- 58

Query: 65  LNGRPHLLHLATVPLTIDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI 124
                +   +  +   ++      N +        + +      + + +      L   +
Sbjct: 59  ---GVNGGKMNPIWPIVNSTLKLRNFRSDFDYLAQNVYKEDGGVYDEDYVQKRIELADSV 115

Query: 125 FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSIRQSFLSDFKLR 184
              G +  +   +  +  +++ A     +         +           +         
Sbjct: 116 EEMGEKLSATLHASGRDDMSILAMQRLNEHQPNGPATPVDMVVDYYKFDYEFAEPPRVTS 175

Query: 185 YSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELLNKRLNWVW 244
                      DF         +                   G +    +   K ++   
Sbjct: 176 LQNTVPLATFSDFGDDVYFVADQRGYEAVVYYLA--------GQYLKTDDKSGKIVDPRL 227

Query: 245 YINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAM------- 297
            +N+    +K +   + V  +   N    A+ V +   + V++     F   +       
Sbjct: 228 QLNKVVREIKYSPGGVTVKTE--DNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRA 285

Query: 298 --------YDCDPLKQIFWS--NVVLIGDAAHPTTP 323
                    +     Q+      V   G+       
Sbjct: 286 IYQFWPVGVNRYEYDQLRAPVGRVYFTGEHTSEHYN 321

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

 Score = 49.0 bits (115), Expect = 6e-07
 Identities = 26/107 (24%), Positives = 40/107 (37%), Gaps = 6/107 (5%)

Query: 8   KAVIVGGSIAGISCAHALLRAGWDVVVLEKAG--GPPTGSPTGAGLGLDRPAQRIIQSWL 65
              +VGG I+G++ AH L   G D V+LE +   G   G+   AG  +++         L
Sbjct: 2   NVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHALAGYLVEQGPNSF----L 57

Query: 66  NGRPHLLHLATVPLTIDQNQATDNAKVTRTLARDDNFNFRAAHWADL 112
           +  P    LA       + +A D A   R +          A     
Sbjct: 58  DREPATRALAAALNLEGRIRAADPAAKRRYVYTRGRLRSVPASPPAF 104

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} Length = 305

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

 Score = 48.6 bits (114), Expect = 7e-07
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 8  KAVIVGGSIAGISCAHALLRAGW-DVVVLEKAGGPPTGSPTGAGLGL 53
          + VI+G  I G + A  L+  GW ++ VL++      G  T    GL
Sbjct: 3  RIVIIGAGIVGTNLADELVTRGWNNITVLDQGPLNMPGGSTSHAPGL 49

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} Length = 383

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.6 bits (114), Expect = 8e-07
 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 7/70 (10%)

Query: 9  AVIVGGSIAGISCAHALLRAGWDVVVLEKA---GGPPTGSPTGAGLGLDRPAQRIIQSWL 65
           V+VGG I+G++ A  L  +G +VVVLE     GG            +D     +     
Sbjct: 2  VVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYV----G 57

Query: 66 NGRPHLLHLA 75
            +  +L LA
Sbjct: 58 PTQNRILRLA 67

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} Length = 253

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

 Score = 47.2 bits (111), Expect = 1e-06
 Identities = 29/173 (16%), Positives = 54/173 (31%), Gaps = 11/173 (6%)

Query: 4   KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP-PTGSPTGAGLGLDRPAQRIIQ 62
            +  + +I+G   AG+ CA  L + G  V V +           +G G       +    
Sbjct: 2   SQYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPA 61

Query: 63  SWLNGRPHLLHLATVPLTIDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPP 122
            +L+  PH +  A    T     +    +      ++    F           +   L  
Sbjct: 62  HYLSQNPHFVKSALARYTNWDFISLVAEQGITYHEKELGQLFCDEGAEQ----IVEMLKS 117

Query: 123 EIFLRGHQYLSFC----ISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLS 171
           E    G + L       +  ++    V+  +       + K   L+ A G LS
Sbjct: 118 ECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKN--LIVATGGLS 168

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

 Score = 47.8 bits (112), Expect = 1e-06
 Identities = 47/348 (13%), Positives = 96/348 (27%), Gaps = 47/348 (13%)

Query: 8   KAVIVGGSIAGISCAHALLRAGWDVVVLEKA----GGPPTGSPTGAGLGLDRPAQRIIQS 63
             VIVG  +AG+S A+ L  AG  V VLE +    G   T     AG   +    R+ + 
Sbjct: 32  HVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRNEEAGWYANLGPMRLPEK 91

Query: 64  WLNGRPHLLHLATVPLTIDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPE 123
                  +              + +N           N   +        GLL   + P 
Sbjct: 92  H----RIVREYIRKFDLRLNEFSQEN---DNAWYFIKNIRKKVGEVKKDPGLLKYPVKPS 144

Query: 124 IFLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSIRQSFLSDFKL 183
              +    L                  +  E ++      +       S ++  + +  L
Sbjct: 145 EAGKSAGQLYEESLG------------KVVEELKRTNCSYILNKYDTYSTKEYLIKEGDL 192

Query: 184 RYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELLNKRLNWV 243
                     +L+         I+ ++       +  + ++  G   +   +  + +   
Sbjct: 193 SPGAVDMIGDLLNEDSGYYVSFIESLKHDDIFAYEKRFDEIVDGMDKLPTAMY-RDIQDK 251

Query: 244 WYINQP--EPIMKGNSVTMRVSNDMIKNMHEEAEKV-----------------WLPEFVK 284
            + N    +       VT+       +     A+ V                  LP+   
Sbjct: 252 VHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSRAVRLIKFNPPLLPKKAH 311

Query: 285 VIKETKEPFINAMYDCDPLKQIFWSNVVLIGDAAHPTTPHGLRSTNMS 332
            ++    P+    +  DPL       +   G+  +    HG   + + 
Sbjct: 312 ALRSVFTPYQFQHFS-DPLTASQ-GRIYFAGE--YTAQAHGWIDSTIK 355

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 373

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 47.1 bits (110), Expect = 2e-06
 Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 3/36 (8%)

Query: 8  KAVIVGGSIAGISCAHALLRAGWDVVVLEKA---GG 40
          +  ++G  ++G++ A+ L   G +V V E     GG
Sbjct: 3  RVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGG 38

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} Length = 314

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

 Score = 46.7 bits (110), Expect = 3e-06
 Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 4/40 (10%)

Query: 4  KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKA---GG 40
          K K K +IVG   +G      L   G  V ++++    GG
Sbjct: 1  KSK-KILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGG 39

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} Length = 298

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

 Score = 45.2 bits (106), Expect = 8e-06
 Identities = 11/37 (29%), Positives = 18/37 (48%)

Query: 5  EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP 41
          E+   ++VG   +G+   + L   G  V V+E AG  
Sbjct: 6  EEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDV 42

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 246

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 44.5 bits (104), Expect = 1e-05
 Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 4/53 (7%)

Query: 8  KAVIVGGSIAGISCAHALLRAGWDVVVLEK----AGGPPTGSPTGAGLGLDRP 56
          + V++G  + G+S A  +      V+        A      + T    GL +P
Sbjct: 2  RVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYADRFTPFTTTDVAAGLWQP 54

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 298

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 44.4 bits (104), Expect = 1e-05
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 3/34 (8%)

Query: 10 VIVGGSIAGISCAHALLRAGWDVVVLEKA---GG 40
          +IVG  + G  CA+ L +    V+V+EK    GG
Sbjct: 5  IIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGG 38

>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.8 bits (104), Expect = 1e-05
 Identities = 5/35 (14%), Positives = 15/35 (42%), Gaps = 3/35 (8%)

Query: 9  AVIVGGSIAGISCAHALLRAGWDVVVLEK---AGG 40
           +++G  +     +  +   G  V+ +++    GG
Sbjct: 9  VIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGG 43

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

 Score = 44.4 bits (103), Expect = 1e-05
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 10 VIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLG 52
          +++GG +AG+  A A  + G   +VL     P   S + A  G
Sbjct: 9  LVIGGGLAGLRAAVATQQKGLSTIVLSLI--PVKRSHSAAAQG 49

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} Length = 322

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

 Score = 43.8 bits (102), Expect = 2e-05
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)

Query: 10 VIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLG 52
          VI+G   AG++ A +   AG  V++LEK   P  G  T    G
Sbjct: 27 VIIGSGGAGLAAAVSARDAGAKVILLEK--EPIPGGNTKLAAG 67

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.6 bits (101), Expect = 2e-05
 Identities = 6/29 (20%), Positives = 13/29 (44%)

Query: 9  AVIVGGSIAGISCAHALLRAGWDVVVLEK 37
           +++G  I     +  L   G  V+ ++K
Sbjct: 8  VIVLGTGITECILSGLLSVDGKKVLHIDK 36

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 317

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 43.8 bits (102), Expect = 2e-05
 Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 2/57 (3%)

Query: 10 VIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLN 66
          ++VG   AG + + A  +AG +V++++K   P +G  +    G         Q+   
Sbjct: 23 LVVGAGSAGFNASLAAKKAGANVILVDK--APFSGGNSMISAGGMNAVGTKQQTAHG 77

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} Length = 379

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

 Score = 43.4 bits (101), Expect = 3e-05
 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 9  AVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGR 68
           VIVG    G + A  L+ AG+ V + +  G   +G   GA        Q+ I  ++N  
Sbjct: 7  VVIVGSGPIGCTYARELVGAGYKVAMFD-IGEIDSGLKIGAHKKNTVEYQKNIDKFVNVI 65

Query: 69 PHLLHLATVPLT 80
             L   +VP+ 
Sbjct: 66 QGQLMSVSVPVN 77

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 308

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 43.1 bits (100), Expect = 3e-05
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 2/43 (4%)

Query: 10 VIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLG 52
          V+VG   AG S A +   +G  V+++EK   P  G       G
Sbjct: 20 VVVGSGGAGFSAAISATDSGAKVILIEK--EPVIGGNAKLAAG 60

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} Length = 330

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

 Score = 42.9 bits (100), Expect = 5e-05
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 10 VIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLG 52
          V++G   AG+  A  + ++G    +L K    PT S T +  G
Sbjct: 11 VVIGAGGAGMRAALQISQSGQTCALLSKV--FPTRSHTVSAQG 51

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} Length = 367

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

 Score = 42.7 bits (99), Expect = 5e-05
 Identities = 13/62 (20%), Positives = 18/62 (29%), Gaps = 1/62 (1%)

Query: 9  AVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGR 68
          AV++G        A  L  AG   ++LE  G           +           SW   R
Sbjct: 5  AVVIGTGYGAAVSALRLGEAGVQTLMLE-MGQLWNQPGPDGNIFCGMLNPDKRSSWFKNR 63

Query: 69 PH 70
            
Sbjct: 64 TE 65

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

 Score = 39.9 bits (92), Expect = 4e-04
 Identities = 11/62 (17%), Positives = 20/62 (32%), Gaps = 1/62 (1%)

Query: 9  AVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGR 68
          A+++G    G   A  L +AG    ++E  G       +   +            WL  +
Sbjct: 10 ALVIGSGYGGAVAALRLTQAGIPTQIVE-MGRSWDTPGSDGKIFCGMLNPDKRSMWLADK 68

Query: 69 PH 70
            
Sbjct: 69 TD 70

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 192

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 38.8 bits (89), Expect = 5e-04
 Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 1/37 (2%)

Query: 1  MEKKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEK 37
          +E     +  IVG   A  + A    RA    ++ E 
Sbjct: 1  LETHNT-RLCIVGSGPAAHTAAIYAARAELKPLLFEG 36

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} Length = 380

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 39.8 bits (92), Expect = 5e-04
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 8/53 (15%)

Query: 9  AVIVGGSIAGISCAHALLR------AGWDVVVLEKAGGPPTGSPTGAGLGLDR 55
           VIVG   AG+S A  L +          V ++EKA     G+ T +G  LD 
Sbjct: 35 VVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHI--GAHTLSGACLDP 85

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 335

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 39.2 bits (90), Expect = 7e-04
 Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 8  KAVIVGGSIAGISCAHALLRAG--WDVVVLEKAGGP 41
          K  I+G   +G+  A ALL       V + E+ G P
Sbjct: 6  KIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSP 41

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} Length = 278

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

 Score = 38.7 bits (89), Expect = 8e-04
 Identities = 27/217 (12%), Positives = 62/217 (28%), Gaps = 15/217 (6%)

Query: 1   MEKKEKGKAVIVGGSIAGISCAHAL-LRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQR 59
           M    +   V+VG   AG+S A+ +       V ++E+    P G     G        R
Sbjct: 28  MITYAETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQ-SVSPGGGAWLGGQLFSAMIVR 86

Query: 60  IIQSWLNGRPHLLHLATVPLTIDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNA 119
                      + +       + ++ A   + +   L    N             L    
Sbjct: 87  KPAHLFLDEIGVAYDEQDTYVVVKHAALFTSTIMSKLLARPNVK-----------LFNAV 135

Query: 120 LPPEIFLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSIRQSFLS 179
              ++ ++G++     +      V          +   ++  ++V++ G       + + 
Sbjct: 136 AAEDLIVKGNRVGG--VVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGPFGATGVK 193

Query: 180 DFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDL 216
             K                   +  I++  R V P +
Sbjct: 194 RLKSIGMIDHVPGMKALDMNTAEDAIVRLTREVVPGM 230

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]} Length = 305

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

 Score = 38.7 bits (89), Expect = 0.001
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 3/43 (6%)

Query: 10 VIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLG 52
          +I+G   AG+S A  L      V+VL K  GP T   T    G
Sbjct: 11 LIIGSGAAGLSLALRLADQH-QVIVLSK--GPVTEGSTFYAQG 50

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} Length = 230

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.0 bits (87), Expect = 0.001
 Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 2/33 (6%)

Query: 8  KAVIVGGSIAGISCAHALLRA--GWDVVVLEKA 38
          +  +VG   AG   A  LL+      V + EK 
Sbjct: 3  QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQ 35

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 213

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (85), Expect = 0.001
 Identities = 6/35 (17%), Positives = 16/35 (45%), Gaps = 2/35 (5%)

Query: 10 VIVGGSIAGISCAHALLRAGWD--VVVLEKAGGPP 42
          +++GG  A  + A ++        V+++ +    P
Sbjct: 8  LLIGGGTAAFAAARSIRARDPGARVLIVSEDPELP 42

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} Length = 186

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

 Score = 37.1 bits (84), Expect = 0.002
 Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 2/33 (6%)

Query: 8  KAVIVGGSIAGISCAHALLRAGWD--VVVLEKA 38
          K V+VGG   G + A  +  A     V ++E  
Sbjct: 4  KVVVVGGGTGGATAAKYIKLADPSIEVTLIEPN 36

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} Length = 196

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 37.0 bits (84), Expect = 0.002
 Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 2/42 (4%)

Query: 2  EKKEKGKAVIVGGSIAGISCAHALLRAG-WDVVVLEKAGGPP 42
          E     K  ++G   A ISCA  L R G  D+ + EK     
Sbjct: 1  EAYSA-KIALLGAGPASISCASFLARLGYSDITIFEKQEYVG 41

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 356

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 37.6 bits (86), Expect = 0.002
 Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 6/45 (13%)

Query: 10 VIVGGSIAGISCAHALLR----AGWDVVVLEKAGGPPTGSPTGAG 50
          +I+GG  +G   A+         G  V ++EKA      S   A 
Sbjct: 25 LIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKA--AVERSGAVAQ 67

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} Length = 184

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

 Score = 36.6 bits (83), Expect = 0.002
 Identities = 9/33 (27%), Positives = 14/33 (42%)

Query: 10 VIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP 42
          +IVG   AG + A    R G    ++ +  G  
Sbjct: 5  LIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQ 37

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 36.9 bits (84), Expect = 0.002
 Identities = 22/183 (12%), Positives = 46/183 (25%), Gaps = 9/183 (4%)

Query: 10  VIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRP 69
           +++G    G   A    + G    ++EK  G    +  G                 + + 
Sbjct: 7   IVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSSYKF 66

Query: 70  HLLHLATVPLTIDQNQATDN--------AKVTRTLARDDNFNFRAAHWADLHGLLYNALP 121
           H  H +     I   +   +         ++ R L        +A       G       
Sbjct: 67  HEAHESFKLHGISTGEVAIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGHGKLLAG 126

Query: 122 PEIFLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSIRQSFLSDF 181
            ++ +      S  + + +  +              +  +LL A  G     R     D 
Sbjct: 127 KKVEVTAADG-SSQVLDTENVILASGSKPVEIPRRPVTTDLLAADSGVTLDERGFIYVDD 185

Query: 182 KLR 184
              
Sbjct: 186 YCA 188

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.2 bits (85), Expect = 0.002
 Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 3/67 (4%)

Query: 1   MEKKEKGKAVIVGGSIAGISCAHAL--LRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQ 58
           ++K      +IVG   +G+S A+ +   R    V ++E     P G     G        
Sbjct: 45  LDKFAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIES-SVAPGGGSWLGGQLFSAMVM 103

Query: 59  RIIQSWL 65
           R      
Sbjct: 104 RKPAHLF 110

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Length = 198

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

 Score = 36.4 bits (82), Expect = 0.003
 Identities = 9/41 (21%), Positives = 14/41 (34%), Gaps = 2/41 (4%)

Query: 8  KAVIVGGSIAGISCAHALLR--AGWDVVVLEKAGGPPTGSP 46
          K +++G S  G      LL      ++   EK       S 
Sbjct: 2  KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSA 42

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 183

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

 Score = 36.2 bits (82), Expect = 0.003
 Identities = 8/31 (25%), Positives = 16/31 (51%)

Query: 6  KGKAVIVGGSIAGISCAHALLRAGWDVVVLE 36
          K   V++G  +A +S    L +AG+  ++  
Sbjct: 3  KAPVVVLGAGLASVSFVAELRQAGYQGLITV 33

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

 Score = 36.9 bits (84), Expect = 0.004
 Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 4/45 (8%)

Query: 10 VIVGGSIAGISCAHALLRAGWD--VVVLEKAGGPPTGSPTGAGLG 52
           IVG   AG+  A A  +A  +  + ++ K    P  S T A  G
Sbjct: 9  AIVGAGGAGLRAAIAAAQANPNAKIALISKV--YPMRSHTVAAEG 51

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} Length = 190

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

 Score = 35.9 bits (82), Expect = 0.004
 Identities = 9/30 (30%), Positives = 14/30 (46%)

Query: 8  KAVIVGGSIAGISCAHALLRAGWDVVVLEK 37
          K +I+G   AG + A    RA    V++  
Sbjct: 7  KLLILGSGPAGYTAAVYAARANLQPVLITG 36

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	426
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	100.0
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	100.0
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	99.95
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	99.92
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	99.79
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	99.62
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	99.55
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	99.52
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	99.49
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	99.41
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	99.38
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	99.35
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	99.34
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	99.32
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	99.31
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	99.3
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	99.3
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	99.26
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	99.18
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	99.14
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	99.09
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.07
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	99.06
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	99.06
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	99.05
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	98.99
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	98.98
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	98.96
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	98.96
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.92
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.91
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.91
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	98.9
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.89
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	98.88
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.85
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	98.84
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.84
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	98.83
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	98.82
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	98.82
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	98.78
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.74
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	98.74
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	98.73
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	98.72
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	98.71
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.68
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.68
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	98.66
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.64
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.64
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	98.63
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	98.62
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	98.61
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	98.59
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	98.58
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.57
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	98.57
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	98.56
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.54
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	98.54
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	98.51
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.48
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.48
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	98.47
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	98.46
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	98.45
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	98.43
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.41
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	98.4
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	98.37
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	98.31
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	98.3
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	98.22
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.21
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	98.21
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.16
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	98.11
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	98.03
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	98.01
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	97.97
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	97.95
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	97.9
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	97.82
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	97.71
d2voua2	128	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	97.7
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	97.61
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.6
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	97.45
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	97.38
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	97.38
d3c96a2	111	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	97.31
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	97.26
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	97.24
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.19
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	97.16
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.09
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	97.0
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	96.85
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	96.77
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	96.72
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	96.71
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	96.69
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	96.65
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	96.63
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	96.62
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	96.58
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	96.56
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	96.56
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	96.42
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	96.39
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	96.34
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	96.27
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	96.19
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	96.13
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	95.82
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	95.68
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	95.68
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	95.67
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	95.66
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	95.64
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	95.61
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	95.61
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	95.6
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	95.53
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	95.53
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	95.5
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	95.47
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	95.44
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	95.38
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	95.38
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	95.33
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	95.31
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	95.11
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	95.05
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	94.99
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	94.93
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	94.92
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	94.89
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	94.88
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	94.87
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	94.69
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	94.65
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	94.65
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	94.64
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	94.52
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	94.48
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	94.31
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	94.15
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	94.14
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	94.13
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	94.13
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	93.99
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	93.99
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	93.76
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	93.42
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	93.23
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	93.16
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	93.08
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	92.97
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	92.9
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	92.8
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	92.56
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	92.37
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	92.16
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	92.11
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	91.6
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	91.52
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	91.26
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	91.09
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	91.06
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	91.03
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	90.72
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	90.41
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	90.25
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	89.83
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	89.74
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	89.69
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	89.11
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	89.04
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	88.73
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	88.44
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	88.42
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	88.22
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	88.08
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	87.85
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	87.71
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	87.55
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	86.96
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	86.87
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	86.73
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	85.86
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	85.8
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	85.74
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	85.46
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	85.41
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	85.1
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	84.9
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	84.58
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	84.49
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	83.59
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	83.49
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	82.97
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	82.74
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	82.71
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	82.53
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	82.32
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	82.23
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	82.08
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	81.72
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	81.13
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	80.75
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	80.45

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=100.00  E-value=3.2e-32  Score=248.14  Aligned_cols=253  Identities=24%  Similarity=0.311  Sum_probs=183.8

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCC-cEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccc
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGW-DVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQN   84 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~   84 (426)
                      ++||+|||||||||++|+.|+++|+ +|+|+||++.+..   .++++.+.++++++|++++.  .+.+............
T Consensus         1 ~~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~~~---~g~~i~l~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~   75 (288)
T d3c96a1           1 PIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRP---LGVGINIQPAAVEALAELGL--GPALAATAIPTHELRY   75 (288)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCC---CSCEEEECHHHHHHHHHTTC--HHHHHHHSEEECEEEE
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCCCC---CceEEEECHHHHHHHHHcCc--hhhhHhhhccccccee
Confidence            3799999999999999999999997 8999999998753   67899999999999999998  6666666555433333


Q ss_pred             ccccccccccc---ccccCCCcchhccHHHHHHHHHhcC---CCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEE
Q 014324           85 QATDNAKVTRT---LARDDNFNFRAAHWADLHGLLYNAL---PPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIE  157 (426)
Q Consensus        85 ~~~~~~~~~~~---~~~~~~~~~~~~~r~~l~~~L~~~~---~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~  157 (426)
                      ...++..+...   .............+......+.+.+   ..+. +.++++++.+...++  .+++++. ..+++..+
T Consensus        76 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~v~v~~~-~g~~~~~~  152 (288)
T d3c96a1          76 IDQSGATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEERDG--RVLIGAR-DGHGKPQA  152 (288)
T ss_dssp             ECTTSCEEEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEEETT--EEEEEEE-ETTSCEEE
T ss_pred             EcCCCCEEEeccccccccccCcccccchhhhHHHHHHHHHHhccCeeeecCcEEEEeeecCC--cEEEEEE-cCCCCeEE
Confidence            33344322111   1111222333344444444333322   1344 889999999886544  5555543 34556667


Q ss_pred             EeecEEEeccCCchhhhhhhcCCCcccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEEEecC
Q 014324          158 IKGNLLVAADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELLN  237 (426)
Q Consensus       158 ~~~d~vI~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (426)
                      +++|+||+|||.+|.+|+.+......                                       +              
T Consensus       153 ~~ad~vi~ADG~~S~vr~~~~~~~~~---------------------------------------~--------------  179 (288)
T d3c96a1         153 LGADVLVGADGIHSAVRAHLHPDQRP---------------------------------------L--------------  179 (288)
T ss_dssp             EEESEEEECCCTTCHHHHHHCTTCCC---------------------------------------C--------------
T ss_pred             EeeceeeccCCccceeeeeecccccc---------------------------------------c--------------
Confidence            99999999999999999886211000                                       0              


Q ss_pred             CeeeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcceEeeeeccCCCCccccccEEEeccc
Q 014324          238 KRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDPLKQIFWSNVVLIGDA  317 (426)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~rv~LvGDA  317 (426)
                                                                                    ....+.+..++++++|||
T Consensus       180 --------------------------------------------------------------~~~~~~~~~~~~~~~gda  197 (288)
T d3c96a1         180 --------------------------------------------------------------RDPLPHWGRGRITLLGDA  197 (288)
T ss_dssp             --------------------------------------------------------------CCCCSCCCBTTEEECTHH
T ss_pred             --------------------------------------------------------------cccccccccCcceecccc
Confidence                                                                          000122566899999999


Q ss_pred             cccCCCCCcchhhhhHHHHHHHHHHHHhhccccHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhcC
Q 014324          318 AHPTTPHGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQGL  383 (426)
Q Consensus       318 Ah~~~P~~G~G~~~ai~Da~~La~~L~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~~  383 (426)
                      +|.++|+.|||+|++|+|+..|+++|.+.  .+.+.+|+.|++.|+|+++.++..++...+.....
T Consensus       198 ~h~~~p~~g~G~~~ai~d~~~l~~~l~~~--~~~~~al~~y~~~r~pr~~~~~~~~~~~~~~~~~~  261 (288)
T d3c96a1         198 AHLMYPMGANGASQAILDGIELAAALARN--ADVAAALREYEEARRPTANKIILANREREKEEWAA  261 (288)
T ss_dssp             HHCCCSSTTCTHHHHHHHHHHHHHHHHHC--SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cceeCCccccchhhhhhhHHHHHHHHhhC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence            99999999999999999999999999875  47889999999999999999999998887765443

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=100.00  E-value=4e-33  Score=262.67  Aligned_cols=336  Identities=15%  Similarity=0.130  Sum_probs=196.3

Q ss_pred             CCccEEEEcCChHHHHHHHHHH-----HcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcce
Q 014324            5 EKGKAVIVGGSIAGISCAHALL-----RAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPL   79 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~-----~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~   79 (426)
                      ..|||+||||||+||++|+.|+     ++|++|+||||++.+..   .++++.|+|+++++|+++|+  .+.+.+.+.+.
T Consensus         6 ~~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~~~---~~r~~~l~~~~~~~L~~lGl--~~~i~~~~~~~   80 (360)
T d1pn0a1           6 SYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVY---NGQADGLQCRTLESLKNLGL--ADKILSEANDM   80 (360)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCCC---SCSCCEECHHHHHHHHTTTC--HHHHHTTCBCC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCCCc---CCeEEEECHHHHHHHHHcCC--hHHHHhhcCCc
Confidence            4589999999999999999996     57999999999998764   56889999999999999998  66676666543


Q ss_pred             eeccccc-ccccccccc------ccccCCCcchhccHHHHHHHHHhcCCC--Ce-eEeeeeEEEEEEecCCceEEEEEEe
Q 014324           80 TIDQNQA-TDNAKVTRT------LARDDNFNFRAAHWADLHGLLYNALPP--EI-FLRGHQYLSFCISEVKTTVTVKAKV  149 (426)
Q Consensus        80 ~~~~~~~-~~~~~~~~~------~~~~~~~~~~~~~r~~l~~~L~~~~~~--~~-i~~~~~v~~~~~~~~~~~v~v~~~~  149 (426)
                      ....... ..+......      ...........+++..+++.|.+.+..  .. ....+.+                  
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~------------------  142 (360)
T d1pn0a1          81 STIALYNPDENGHIRRTDRIPDTLPGISRYHQVVLHQGRIERRILDSIAEISDTRIKVERPL------------------  142 (360)
T ss_dssp             CEEEEEEECTTSCEEEEEEEESSCTTSCSSCCEECCHHHHHHHHHHHHHHHHTTSSCEECSE------------------
T ss_pred             ceeEEEecccCCcccccccccccccccccchheeecHHHHHHHHHHHHHhccccceeeeEec------------------
Confidence            3221111 111111100      111122334557788888877765432  11 1111110                  


Q ss_pred             ccCCceEEEeecEEEeccCCchhhhhhhcCCCcccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCce
Q 014324          150 LQTDEVIEIKGNLLVAADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTH  229 (426)
Q Consensus       150 ~~~g~~~~~~~d~vI~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (426)
                          ....+.+|++++|||.+|.+|.............+                     ....+.         ..+.+
T Consensus       143 ----~~~~~~~d~~~~~dg~~s~v~~~~~~~~~~~~~~~---------------------~~~~~~---------~~~~~  188 (360)
T d1pn0a1         143 ----IPEKMEIDSSKAEDPEAYPVTMTLRYMSEDESTPL---------------------QFGHKT---------ENGLF  188 (360)
T ss_dssp             ----EEEEEEECGGGTTCTTCCCEEEEEEECCGGGSCCC---------------------TTCCCC---------CSSSC
T ss_pred             ----ccceEEeeEEEEeecCCcceEEEEEEeecccccce---------------------eeeeec---------CCCce
Confidence                11236899999999999999865411000000000                     000000         00000


Q ss_pred             EEEEEec-CCeeeEEEEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcceEeeeeccCCCCccc-
Q 014324          230 SVFYELL-NKRLNWVWYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDPLKQIF-  307 (426)
Q Consensus       230 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-  307 (426)
                      ...++.. .....+  ..  +............ ..    ....  ............     ..     ......+|. 
T Consensus       189 ~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~-~~----~~~~--~~~~~~~~~~~~-----~~-----~~~~~~~~~~  247 (360)
T d1pn0a1         189 RSNLQTQEEEDANY--RL--PEGKEAGEIETVH-CK----YVIG--CDGGHSWVRRTL-----GF-----EMIVTEKFSK  247 (360)
T ss_dssp             CCHHHHHHHHHTSC--CC--STTCCTTCEEEEE-EE----EEEE--CCCTTCHHHHHH-----TC-----CCEECSCSEE
T ss_pred             EEeeecCCccccee--ec--CcccchhhHHHHH-HH----hhcC--cccccchhhccc-----cc-----ccchhhheee
Confidence            0000000 000000  01  1110000000000 00    0000  000000000000     00     011123454 


Q ss_pred             cccEEEeccccccCCCCCcchhhhhHHHHHHHHHHHHhh-ccccHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhcCCCC
Q 014324          308 WSNVVLIGDAAHPTTPHGLRSTNMSILDAMVLGKSLEKW-GVEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQGLALP  386 (426)
Q Consensus       308 ~~rv~LvGDAAh~~~P~~G~G~~~ai~Da~~La~~L~~~-~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~~~~~  386 (426)
                      .+|++|+|||||.|+|+.|||+|+||+||..|+++|... .....+++|++|+++|+++++.++..++.+.+++.+.  |
T Consensus       248 ~grv~LvGDAAH~~~P~~GqG~n~al~Da~~La~~l~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~--~  325 (360)
T d1pn0a1         248 DERVFIAGDACHTHSPKAGQGMNTSMMDTYNLGWKLGLVLTGRAKRDILKTYEEERQPFAQALIDFDHQFSRLFSGR--P  325 (360)
T ss_dssp             TTTEEECGGGTEECCSTTCCHHHHHHHHHHHHHHHHHHHHTTCBCGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHSC--B
T ss_pred             cCcEEEccCcccccccccCCCCcccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--c
Confidence            489999999999999999999999999999999999876 3345678899999999999999999999999999864  3


Q ss_pred             CCCCCCCCCCChhhhHHHhhccCCcccCCCcccc
Q 014324          387 DREPFNTKTASPQDCQELQQKTMPFFADLPSLVD  420 (426)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (426)
                      ..............+...+.+.+.|.+|+..-+|
T Consensus       326 ~~~~~~~~~~~~~~~~~~f~~~~~~~~G~~~~y~  359 (360)
T d1pn0a1         326 AKDVADEMGVSMDVFKEAFVKGNEFASGTAINYD  359 (360)
T ss_dssp             CSSTTCTTSBCHHHHHHHHHHHHHHHTTCCCCCC
T ss_pred             hHHHHHhcccchHHHHHHHHHhhhhheeeCcccC
Confidence            2223334456677888888888889999875543

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.95  E-value=1.9e-28  Score=223.91  Aligned_cols=247  Identities=17%  Similarity=0.100  Sum_probs=175.4

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ   85 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   85 (426)
                      ++||+||||||+||++|+.|+++|++|+||||++.+... ..+++..++++++++|+++|+  .+.+.+...+.......
T Consensus         2 k~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~~~~~-~~~~~~~l~~~~~~~l~~lg~--~~~l~~~~~~~~~~~~~   78 (292)
T d1k0ia1           2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVL-GRIRAGVLEQGMVDLLREAGV--DRRMARDGLVHEGVEIA   78 (292)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHH-TCCCCCEECHHHHHHHHHTTC--CHHHHHHCEEESCEEEE
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCC-CCceEEEECHHHHHHHHHcCc--hHHHHhhcccccceEEE
Confidence            479999999999999999999999999999998754311 133567799999999999999  56666665553321111


Q ss_pred             ccccccccccccccCCCcchhccHHHHHHHHHhcCCC-Ce-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEE
Q 014324           86 ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPP-EI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLL  163 (426)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~-~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~v  163 (426)
                      ...+...............+.+.|..+.+.|.+.+.. +. +.++...+.... .+...++|++  ..+|++.+++||+|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~--~~~g~~~~i~a~~v  155 (292)
T d1k0ia1          79 FAGQRRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHD-LQGERPYVTF--ERDGERLRLDCDYI  155 (292)
T ss_dssp             ETTEEEEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEEC-TTSSSCEEEE--EETTEEEEEECSEE
T ss_pred             ecccccccccccccccccceeecHHHHHHHHHHHHHhCCCcEEEcceeeeeee-eccCceEEEE--ecCCcEEEEEeCEE
Confidence            1111111111111223345677889999998887653 33 666665555443 3334455543  35777778999999


Q ss_pred             EeccCCchhhhhhhcCCCcccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEEEecCCeeeEE
Q 014324          164 VAADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELLNKRLNWV  243 (426)
Q Consensus       164 I~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (426)
                      |+|||.+|++|+++.                                                                 
T Consensus       156 VgADG~~S~vR~~i~-----------------------------------------------------------------  170 (292)
T d1k0ia1         156 AGCDGFHGISRQSIP-----------------------------------------------------------------  170 (292)
T ss_dssp             EECCCTTCSTGGGSC-----------------------------------------------------------------
T ss_pred             EECCCCCCcccceee-----------------------------------------------------------------
Confidence            999999999998630                                                                 


Q ss_pred             EEEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcceEeeeeccCCCCccccccEEEeccccccCCC
Q 014324          244 WYINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDPLKQIFWSNVVLIGDAAHPTTP  323 (426)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~rv~LvGDAAh~~~P  323 (426)
                                                                                 .+.+..++..++||++|.++|
T Consensus       171 -----------------------------------------------------------~~~~~~~~~~~~~~~~~~~~p  191 (292)
T d1k0ia1         171 -----------------------------------------------------------AERMQHGRLFLAGDAAHIVPP  191 (292)
T ss_dssp             -----------------------------------------------------------GGGSEETTEEECGGGTEECCG
T ss_pred             -----------------------------------------------------------eccccccccccceeeeeecCC
Confidence                                                                       011344678899999999999


Q ss_pred             CCcchhhhhHHHHHHHHHHHHhhccccHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhc
Q 014324          324 HGLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQG  382 (426)
Q Consensus       324 ~~G~G~~~ai~Da~~La~~L~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~  382 (426)
                      ..|+|+|.++.|+..|++++...........+..|...+.+++....+.+.....+.+.
T Consensus       192 ~~~~~~n~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (292)
T d1k0ia1         192 TGAKGLNLAASDVSTLYRLLLKAYREGRGELLERYSAICLRRIWKAERFSWWMTSVLHR  250 (292)
T ss_dssp             GGTCHHHHHHHHHHHHHHHHHHHHHHCCGGGGGGHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             ccccccccccccccccccceeeEecCCCHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999998776433444567888888888877666666666666654

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=99.92  E-value=1e-23  Score=189.21  Aligned_cols=239  Identities=22%  Similarity=0.292  Sum_probs=170.1

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccc
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQN   84 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~   84 (426)
                      ...+|+||||||+||++|+.|+++|++|+||||++.+..  ..++++.++++++++|+++|+.  .......... ....
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~--~~~~g~~~~~~~~~~l~~~g~~--~~~~~~~~~~-~~~~   77 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLS--GFGTGIVVQPELVHYLLEQGVE--LDSISVPSSS-MEYV   77 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCC--CCSCEEECCHHHHHHHHHTTCC--GGGTCBCCCE-EEEE
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCC--CCceEEEECccHHHHHHHcCcc--hhhhccCCCc-ceeE
Confidence            456899999999999999999999999999999887643  3678899999999999999883  3322222221 1112


Q ss_pred             cccccccccccccccCCCcchhccHHHHHHHHHhcCCCCeeEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEE
Q 014324           85 QATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEIFLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLV  164 (426)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI  164 (426)
                      ....++......     .......+..+...+........++++++++++...+  ..++++   ++||++  +++|++|
T Consensus        78 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~v~v~---~~dG~~--~~~d~~v  145 (265)
T d2voua1          78 DALTGERVGSVP-----ADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDS--ETVQMR---FSDGTK--AEANWVI  145 (265)
T ss_dssp             ETTTCCEEEEEE-----CCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECS--SCEEEE---ETTSCE--EEESEEE
T ss_pred             eccCCceecccc-----cccccchhHHHHHHHHHhcccceeecCcEEEEEEeeC--CceEEE---ECCCCE--EEEEEEe
Confidence            222222211111     1111222333333333333333389999999998544  467776   788886  8999999


Q ss_pred             eccCCchhhhhhhcCCCcccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEEEecCCeeeEEE
Q 014324          165 AADGCLSSIRQSFLSDFKLRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELLNKRLNWVW  244 (426)
Q Consensus       165 ~AdG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (426)
                      +|||.+|.+|..+.....                                                              
T Consensus       146 ~adG~~s~~r~~~~~~~~--------------------------------------------------------------  163 (265)
T d2voua1         146 GADGGASVVRKRLLGIET--------------------------------------------------------------  163 (265)
T ss_dssp             ECCCTTCHHHHHHHCCCC--------------------------------------------------------------
T ss_pred             cccccccccccccccccc--------------------------------------------------------------
Confidence            999999999986411000                                                              


Q ss_pred             EEecCCCCcCCCcceeccCHHHHHHHHHHHhhcccHHHHHHhhhcCcceEeeeeccCCCCccccccEEEeccccccCCCC
Q 014324          245 YINQPEPIMKGNSVTMRVSNDMIKNMHEEAEKVWLPEFVKVIKETKEPFINAMYDCDPLKQIFWSNVVLIGDAAHPTTPH  324 (426)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~rv~LvGDAAh~~~P~  324 (426)
                                                                                ...+....+...||++|.+.|.
T Consensus       164 ----------------------------------------------------------~~~~~~~~~~~~~~~a~~~~p~  185 (265)
T d2voua1         164 ----------------------------------------------------------VDRMVHGRVLLIGDAAVTPRPH  185 (265)
T ss_dssp             ----------------------------------------------------------CSCSEETTEEECGGGTSBCCGG
T ss_pred             ----------------------------------------------------------cccccccccccccccccccccc
Confidence                                                                      0001223566779999999999


Q ss_pred             CcchhhhhHHHHHHHHHHHHhhccccHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhc
Q 014324          325 GLRSTNMSILDAMVLGKSLEKWGVEGLLSALEEYQTVRLPVTSKQVLHSRRLGRIKQG  382 (426)
Q Consensus       325 ~G~G~~~ai~Da~~La~~L~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~  382 (426)
                      .++|.+.+++|+..|++.+...  .+....|+.|+..|.++.+.++..++..+.+...
T Consensus       186 ~~~g~~~~~~d~~~l~~~l~~~--~~~~~~l~~~~~~r~~~~~~~~~~~r~~g~~~~~  241 (265)
T d2voua1         186 AAAGGAKASDDARTLAEVFTKN--HDLRGSLQSWETRQLQQGHAYLNKVKKMASRLQH  241 (265)
T ss_dssp             GSCHHHHHHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ccccceeeeccHHHHHHHHhhc--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999875  4678889999999999999999988888776643

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.79  E-value=7.8e-19  Score=164.64  Aligned_cols=129  Identities=18%  Similarity=0.091  Sum_probs=76.0

Q ss_pred             CccEEEEcCChHHHHHHHHHHH------cCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcc-
Q 014324            6 KGKAVIVGGSIAGISCAHALLR------AGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVP-   78 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~------~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~-   78 (426)
                      .+|||||||||||+++|+.|+|      +|++|+||||...++.+. ++ |-.+.++++   +++.+...+.-...... 
T Consensus        32 e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~pG~k~-~~-Ggvl~~~~l---~~l~p~~~~~~~~~~~~~  106 (380)
T d2gmha1          32 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHT-LS-GACLDPRAF---EELFPDWKEKGAPLNTPV  106 (380)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTC-CC-CCEECTHHH---HHHCTTHHHHTCCCCEEC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCCCCCc-cc-cccccHHHH---HHHccchhhhccccccce
Confidence            4899999999999999999998      899999999999998643 32 334666654   44433101100000000 


Q ss_pred             -eeeccccccccc-ccccc-ccccCCCcchhccHHHHHHHHHhcCCC-Ce-eEeeeeEEEEEEecC
Q 014324           79 -LTIDQNQATDNA-KVTRT-LARDDNFNFRAAHWADLHGLLYNALPP-EI-FLRGHQYLSFCISEV  139 (426)
Q Consensus        79 -~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~r~~l~~~L~~~~~~-~~-i~~~~~v~~~~~~~~  139 (426)
                       ............ .+... .........+.+.+..+.+++.+.++. ++ +..+..+.++...++
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ae~~g~~~~~~~~~~~~l~~~~  172 (380)
T d2gmha1         107 TEDRFGILTEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHED  172 (380)
T ss_dssp             CEEEEEEECSSCEEECCCCTTSTTCCTTCEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEEECTT
T ss_pred             ecceEEEeeccccccccccCchhcccccceeehhhHHHHHHHHHHhhccceeeeecceeeeeeccC
Confidence             000011111111 11000 111222345567788899998887764 66 888888888776544

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=99.62  E-value=3e-16  Score=138.75  Aligned_cols=162  Identities=19%  Similarity=0.142  Sum_probs=85.1

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCC-cce-ec-cChhHHHHH-HHHhcCCchhhhccCccee-
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPT-GAG-LG-LDRPAQRII-QSWLNGRPHLLHLATVPLT-   80 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~-~~~-~~-l~~~~~~~l-~~~~~~~~~~~~~~~~~~~-   80 (426)
                      +|||+||||||+||++|+.|+++|++|+||||.+.++..... +.+ .. ........+ ...... ............ 
T Consensus         2 ~yDViIIGaG~aGl~aA~~la~~G~~V~liEk~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~   80 (251)
T d2i0za1           2 HYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGN-GRFLYSAFSIFNN   80 (251)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBT-GGGGHHHHHHSCH
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCcceeccCCcceecccccccchhhcccccc-hhhhhhhhhhhhh
Confidence            599999999999999999999999999999999876421100 000 00 000011111 111110 000000000000 


Q ss_pred             eccccccccccccccccccCCCcchhccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEE
Q 014324           81 IDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEI  158 (426)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~  158 (426)
                      .....+.....+...................+.+.|.+.++ .++ ++++++|+++..+++ ....+.   .++|+.  +
T Consensus        81 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~L~~~~~~~gv~i~~~~~v~~i~~~~~-~~~~v~---~~~g~~--i  154 (251)
T d2i0za1          81 EDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYENG-QTKAVI---LQTGEV--L  154 (251)
T ss_dssp             HHHHHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETT-EEEEEE---ETTCCE--E
T ss_pred             HHHHHHHHhcCCccccccccceecccccHHHHHHHHHHHHHHcCCcccCCcEEEEEEEECC-EEEEEE---eCCCCe--E
Confidence            00000000000000000000001112233556666766654 588 999999999987543 222344   577776  8


Q ss_pred             eecEEEeccCCchhhh
Q 014324          159 KGNLLVAADGCLSSIR  174 (426)
Q Consensus       159 ~~d~vI~AdG~~S~vR  174 (426)
                      +||+||.|||.+|..+
T Consensus       155 ~a~~vI~AtGg~S~p~  170 (251)
T d2i0za1         155 ETNHVVIAVGGKSVPQ  170 (251)
T ss_dssp             ECSCEEECCCCSSSGG
T ss_pred             ecCeEEEccCCccccc
Confidence            9999999999999664

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=99.55  E-value=2.1e-16  Score=139.92  Aligned_cols=148  Identities=15%  Similarity=0.132  Sum_probs=84.9

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCC-Ccc-eeccC-------------hh-HHHHHHHHhcCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSP-TGA-GLGLD-------------RP-AQRIIQSWLNGR   68 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~-~~~-~~~l~-------------~~-~~~~l~~~~~~~   68 (426)
                      +.+||+|||||||||++|+.|+++|++|+||||.+.++.... .|. ...+.             ++ ....+..+....
T Consensus         3 ~~~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~G~k~~~sGgG~~n~~n~~~~~~~~~~~~~~~~~~~l~~~~~~~   82 (253)
T d2gqfa1           3 QYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTNWD   82 (253)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCHHH
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCceEecCCccccccCcccCchhhhccChHHHHHHhhhhcccc
Confidence            458999999999999999999999999999999988752100 000 01111             11 011111111000


Q ss_pred             -chhhhccCcceeeccccccccccccccccccCCCcchhccHHHHHHHHHhcCCC-Ce-eEeeeeEEEEEEecCCceEEE
Q 014324           69 -PHLLHLATVPLTIDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPP-EI-FLRGHQYLSFCISEVKTTVTV  145 (426)
Q Consensus        69 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~-~~-i~~~~~v~~~~~~~~~~~v~v  145 (426)
                       .+.+...+...                ........+.......+.+.|.+.+++ ++ |+++++|++++..+++..+.+
T Consensus        83 ~~~~~~~~g~~~----------------~~~~~~~~~~~~~a~~i~~~L~~~~~~~gV~i~~~~~V~~i~~~~~~~~v~~  146 (253)
T d2gqfa1          83 FISLVAEQGITY----------------HEKELGQLFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRF  146 (253)
T ss_dssp             HHHHHHHTTCCE----------------EECSTTEEEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCE
T ss_pred             hhhhhhhcCcce----------------eeecCCccccccchhHHHHHHHHHHHHcCCCeecCceEEEEEeecCCceeEE
Confidence             00000000000                000011111122345677777776654 88 999999999998766554432


Q ss_pred             EEEeccCCceEEEeecEEEeccCCchh
Q 014324          146 KAKVLQTDEVIEIKGNLLVAADGCLSS  172 (426)
Q Consensus       146 ~~~~~~~g~~~~~~~d~vI~AdG~~S~  172 (426)
                      ..  ..++.+  ++||.||.|+|..|.
T Consensus       147 ~~--~~~~~~--~~a~~VIiAtGG~S~  169 (253)
T d2gqfa1         147 VL--QVNSTQ--WQCKNLIVATGGLSM  169 (253)
T ss_dssp             EE--EETTEE--EEESEEEECCCCSSC
T ss_pred             EE--ecCCEE--EEeCEEEEcCCcccc
Confidence            21  234544  899999999999874

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.52  E-value=2e-14  Score=132.42  Aligned_cols=164  Identities=14%  Similarity=0.090  Sum_probs=89.0

Q ss_pred             CCCCCCccEEEEcCChHHHHHHHHHHHcC--CcEEEEcccCCCCCCC----CCcceeccChhHHHHHHHHhcCCchhhhc
Q 014324            1 MEKKEKGKAVIVGGSIAGISCAHALLRAG--WDVVVLEKAGGPPTGS----PTGAGLGLDRPAQRIIQSWLNGRPHLLHL   74 (426)
Q Consensus         1 m~~~~~~~V~IvGaG~aGl~~A~~L~~~G--~~v~v~E~~~~~~~~~----~~~~~~~l~~~~~~~l~~~~~~~~~~~~~   74 (426)
                      |.+|  .+|+|||||||||++|..|+++|  .+|+||||++.++..-    ..+....+... ...   ...  ......
T Consensus         1 m~~~--KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~iGG~W~~~~~~~~~~~~~~~-~~~---~~~--~~~~~~   72 (335)
T d2gv8a1           1 LPTI--RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPST-NPI---LTT--EPIVGP   72 (335)
T ss_dssp             CCSC--CEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBC-CTT---CCC--CCBCCS
T ss_pred             CCCC--CeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCCCCcccccCCCCcccCCccc-ccc---ccc--cccccc
Confidence            4444  37999999999999999998876  5999999999875210    01111111000 000   000  000000


Q ss_pred             cCcce--eecccccccc--cccccccc-ccCCCcchhccHHHHHHHHHhcCCC-Ce-eEeeeeEEEEEEecCCceEEEEE
Q 014324           75 ATVPL--TIDQNQATDN--AKVTRTLA-RDDNFNFRAAHWADLHGLLYNALPP-EI-FLRGHQYLSFCISEVKTTVTVKA  147 (426)
Q Consensus        75 ~~~~~--~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~r~~l~~~L~~~~~~-~~-i~~~~~v~~~~~~~~~~~v~v~~  147 (426)
                      ...+.  ...+......  ........ .........++|..+.++|...+.. +. |+++++|++++.++  ..+.|++
T Consensus        73 ~~~~~~~s~~y~~l~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~yl~~~~~~~~~~I~~~t~V~~v~~~~--~~w~Vt~  150 (335)
T d2gv8a1          73 AALPVYPSPLYRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKD--GSWVVTY  150 (335)
T ss_dssp             SSCCBCCCCCCTTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEET--TEEEEEE
T ss_pred             ccccccccccchhhhcCCcHhhhhhhhhcCCcccccCCchHHHHHHHHHHHHHhhhcccCceEEEEEEecC--CEEEEEE
Confidence            00000  0000000000  00000000 0000111235688888888876654 45 99999999999754  4666776


Q ss_pred             EeccCCce-EEEeecEEEeccCCchhhh
Q 014324          148 KVLQTDEV-IEIKGNLLVAADGCLSSIR  174 (426)
Q Consensus       148 ~~~~~g~~-~~~~~d~vI~AdG~~S~vR  174 (426)
                      ++.+.++. .+..+|+||.|+|.+|...
T Consensus       151 ~~~~~~~~~~~~~~d~VI~AtG~~s~p~  178 (335)
T d2gv8a1         151 KGTKAGSPISKDIFDAVSICNGHYEVPY  178 (335)
T ss_dssp             EESSTTCCEEEEEESEEEECCCSSSSBC
T ss_pred             EecCCCCeEEEEEeeEEEEcccccccce
Confidence            65555543 3467999999999998543

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=99.49  E-value=6.2e-14  Score=126.20  Aligned_cols=136  Identities=18%  Similarity=0.173  Sum_probs=86.0

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHH-hcCCchhhhccCcceeecc
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSW-LNGRPHLLHLATVPLTIDQ   83 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~   83 (426)
                      +.+||+|||||++||++|..|+++|++|+||||.+.++.      .+..+        ++ |.    .   ...+  ...
T Consensus         6 ~~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~iGG------tW~~n--------~ypg~----~---~d~~--~~~   62 (298)
T d1w4xa1           6 EEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGG------VWYWN--------RYPGA----R---CDIE--SIE   62 (298)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCT------HHHHC--------CCTTC----B---CSSC--TTT
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCccc------ccccC--------CCCCc----e---eccc--ccc
Confidence            568999999999999999999999999999999998642      11100        00 00    0   0000  000


Q ss_pred             ccccccccccccccccCCCcchhccHHHHHHHHHhcCCC-Ce---eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEe
Q 014324           84 NQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPP-EI---FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIK  159 (426)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~-~~---i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~  159 (426)
                      ......    ...............+..+.++|.+.++. +.   |+++++|++++.+++...++|+   ..++.+  ++
T Consensus        63 ~~~s~~----~~~~~~~~~~~~~p~~~e~~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de~~~~W~V~---~~~~~~--~~  133 (298)
T d1w4xa1          63 YCYSFS----EEVLQEWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVD---TNHGDR--IR  133 (298)
T ss_dssp             SSCCSC----HHHHHHCCCCBSSCBHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEE---ETTCCE--EE
T ss_pred             cccccc----ccccCCCCCccccCccchHHHHHHHHHHHcCCcccccCCcEEEEEEEecCCCceeec---cccccc--cc
Confidence            000000    00000001111223456666777665542 32   8999999999998888888887   667765  78


Q ss_pred             ecEEEeccCCchh
Q 014324          160 GNLLVAADGCLSS  172 (426)
Q Consensus       160 ~d~vI~AdG~~S~  172 (426)
                      +|+||.|+|..|.
T Consensus       134 ~~~~i~atG~ls~  146 (298)
T d1w4xa1         134 ARYLIMASGQLSD  146 (298)
T ss_dssp             EEEEEECCCSCCC
T ss_pred             cceEEEeeccccc
Confidence            9999999998763

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.41  E-value=1e-12  Score=119.31  Aligned_cols=165  Identities=17%  Similarity=0.131  Sum_probs=87.7

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCc-ceeccChhHH-----------HHHHH---HhcC--
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTG-AGLGLDRPAQ-----------RIIQS---WLNG--   67 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~-~~~~l~~~~~-----------~~l~~---~~~~--   67 (426)
                      +.+||+|||||++||++|+.|+++|.+|+|+||.+..+..+... .++.......           ...+.   .+..  
T Consensus        15 e~~DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~~~gG~s~~s~G~~~~~~~~~~~~~~~~d~~~~~~~d~~~~~~~~~   94 (308)
T d1y0pa2          15 DTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNIN   94 (308)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcceecCCCCccccchhhhhhhccchHHHHHHHHHhhhhhcc
Confidence            56899999999999999999999999999999998765422211 1221111000           00000   0000  


Q ss_pred             --------------CchhhhccCcceeeccccccccccccccccccCCCcchhccHHHHHHHHHhc-CCCCe-eEeeeeE
Q 014324           68 --------------RPHLLHLATVPLTIDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNA-LPPEI-FLRGHQY  131 (426)
Q Consensus        68 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~-~~~~~-i~~~~~v  131 (426)
                                    ..+.+.+.+.++...  ....+........    ..........+.+.+.+. .+.++ +++++++
T Consensus        95 d~~lv~~~~~~~~~~i~~L~~~Gv~~~~~--~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~a~~~gv~i~~~~~v  168 (308)
T d1y0pa2          95 DPALVKVLSSHSKDSVDWMTAMGADLTDV--GMMGGASVNRAHR----PTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRG  168 (308)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCCCCEE--ECCTTCSSCCEEE----STTTCCHHHHHHHHHHHHHHHTTCEEESSEEE
T ss_pred             chHHHHHHHHhhhHHHHHHHHcCCCcccc--ccccccccccccc----cccccchHHHHHHHHHHHHHhccceEEEeecc
Confidence                          001111111111000  0000000000000    000111122344444443 34688 9999999


Q ss_pred             EEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCchhhhhh
Q 014324          132 LSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSIRQS  176 (426)
Q Consensus       132 ~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~vR~~  176 (426)
                      +++..++++..+-|.+++ .++....+.|+.||.|+|.++...+.
T Consensus       169 ~~li~~~~G~V~Gv~~~~-~~~~~~~i~Ak~VVlAtGG~~~n~~~  212 (308)
T d1y0pa2         169 IEVLKDDKGTVKGILVKG-MYKGYYWVKADAVILATGGFAKNNER  212 (308)
T ss_dssp             EEEEECTTSCEEEEEEEE-TTTEEEEEECSEEEECCCCCTTCHHH
T ss_pred             chhhhhcccccccccccc-cccceeEeecCeEEEccCcccccHHH
Confidence            999876554433455443 34555679999999999998876554

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=99.38  E-value=4.5e-13  Score=120.01  Aligned_cols=38  Identities=16%  Similarity=0.348  Sum_probs=35.4

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP   42 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~   42 (426)
                      .+|||+|||||++|+++|+.|+++|++|+|+||...+.
T Consensus         2 ~~yDvvIIGaGi~Gls~A~~La~~G~~V~viE~~~~~~   39 (281)
T d2gf3a1           2 THFDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPH   39 (281)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSSC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCC
Confidence            57999999999999999999999999999999987654

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=99.35  E-value=1.8e-12  Score=119.20  Aligned_cols=61  Identities=10%  Similarity=0.050  Sum_probs=46.0

Q ss_pred             HHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCchh
Q 014324          111 DLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSS  172 (426)
Q Consensus       111 ~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~  172 (426)
                      .+...|.+.+. .++ |+.++.++++..++ +..+.+.+.+..+|+...+.|+-||.|+|..+.
T Consensus       159 ~i~~~l~~~~~~~gv~i~~~~~~~~li~~~-~~v~g~~~~~~~~g~~~~i~Ak~VvlATGG~~~  221 (336)
T d2bs2a2         159 TMLFAVANECLKLGVSIQDRKEAIALIHQD-GKCYGAVVRDLVTGDIIAYVAKGTLIATGGYGR  221 (336)
T ss_dssp             HHHHHHHHHHHHHTCEEECSEEEEEEEEET-TEEEEEEEEETTTCCEEEEECSEEEECCCCCGG
T ss_pred             HHHHHHHHHHHhccccccceeeeeeccccc-ccccceeEEeccCCcEEEEecCeEEEecccccc
Confidence            45555655554 488 99999999988643 344456666678999888999999999999874

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=99.34  E-value=2.5e-12  Score=117.46  Aligned_cols=39  Identities=36%  Similarity=0.442  Sum_probs=35.9

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPT   43 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~   43 (426)
                      +.+||+|||||++||++|+.|+++|.+|+|+||.+..+.
T Consensus        22 et~DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~~~gG   60 (322)
T d1d4ca2          22 ETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGG   60 (322)
T ss_dssp             EECSEEEECSSHHHHHHHHHHHTTTCCEEEECSSSSSCT
T ss_pred             CcceEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCC
Confidence            468999999999999999999999999999999987654

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=99.32  E-value=7.2e-12  Score=113.58  Aligned_cols=169  Identities=16%  Similarity=0.171  Sum_probs=91.6

Q ss_pred             CCCccEEEEcCChHHHHHHHHHHHc--CCcEEEEcccCCCCCCCCCc-ceecc-----------------------ChhH
Q 014324            4 KEKGKAVIVGGSIAGISCAHALLRA--GWDVVVLEKAGGPPTGSPTG-AGLGL-----------------------DRPA   57 (426)
Q Consensus         4 ~~~~~V~IvGaG~aGl~~A~~L~~~--G~~v~v~E~~~~~~~~~~~~-~~~~l-----------------------~~~~   57 (426)
                      ..++||+|||+|+|||++|+.++++  |.+|+|+||....+..+... .|+.-                       .+..
T Consensus         3 ~~~~DVlVIG~G~AGl~AA~~a~~~~~g~~V~lleK~~~~~g~s~~A~GGi~a~~~~~Ds~e~~~~dt~~~g~~~~d~~~   82 (311)
T d1kf6a2           3 TFQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFEYHFHDTVAGGDWLCEQDV   82 (311)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGSGGGGCCSCEECCCSTTCCHHHHHHHHHHHTTTCSCHHH
T ss_pred             ceecCEEEECccHHHHHHHHHHHHhCCCCEEEEEECCCCCCCcHHHHhhhHhhhcCCCCCHHHHHHHHHhhccCccHHHH
Confidence            3568999999999999999999987  67999999987554322110 01111                       1111


Q ss_pred             HHHHHHHhcCCchhhhccCcceeeccccccccccccccccccCCCcchhccHHHHHHHHHhcCCC-Ce-eEeeeeEEEEE
Q 014324           58 QRIIQSWLNGRPHLLHLATVPLTIDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPP-EI-FLRGHQYLSFC  135 (426)
Q Consensus        58 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~-~~-i~~~~~v~~~~  135 (426)
                      .+.+-...+...+.+.+.+.++.............................+..+...+.+..+. ++ ++.++.++++.
T Consensus        83 v~~~~~~~~~~i~~L~~~g~~f~~~~~~~~~~~~~~~~~~~r~~~~~~~~g~~~~~~~l~~~~~~~~v~i~~~~~v~~Ll  162 (311)
T d1kf6a2          83 VDYFVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDIL  162 (311)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCCBCTTSSBCCBCCTTCSSCCEECSTTCHHHHHHHHHHHHHTTCTTEEEEETEEEEEEE
T ss_pred             HHHHHHhhhHhHHhhhhcccccccccccccccccccccccccccccccchhhHHHHhHHHHHHccCcceeEeeeEeeeeE
Confidence            11111111100112222332221110000000000000000000011122345566666666664 78 99999999998


Q ss_pred             EecCCceEEEEEEeccCCceEEEeecEEEeccCCchhh
Q 014324          136 ISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSI  173 (426)
Q Consensus       136 ~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~v  173 (426)
                      .++ +..+-+...+..+|+...+.|+.||.|+|..+.+
T Consensus       163 ~d~-g~v~Gvv~~~~~~g~~~~~~AkaVILATGG~g~~  199 (311)
T d1kf6a2         163 VDD-GHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRV  199 (311)
T ss_dssp             EET-TEEEEEEEEETTTTEEEEEECSCEEECCCCCGGG
T ss_pred             ecC-CcceeEEEEEcCCCcEEEEECCEEEEcCCCcccc
Confidence            644 4444455555788988889999999999998753

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.31  E-value=2.7e-12  Score=114.46  Aligned_cols=37  Identities=32%  Similarity=0.539  Sum_probs=33.9

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCC-cEEEEcccCCCCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGW-DVVVLEKAGGPPT   43 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~~~~   43 (426)
                      .||+|||||||||++|+.|+++|+ +|+||||++.++.
T Consensus         1 P~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~~~GG   38 (347)
T d1b5qa1           1 PRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGG   38 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBT
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCCCcEEEEECCCCCCc
Confidence            489999999999999999999997 6999999988753

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=99.30  E-value=8e-13  Score=117.93  Aligned_cols=63  Identities=13%  Similarity=0.043  Sum_probs=45.6

Q ss_pred             ccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCchh-hhhhh
Q 014324          107 AHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSS-IRQSF  177 (426)
Q Consensus       107 ~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~-vR~~l  177 (426)
                      ++...+.+.|.+.+. .|+ ++.+++|++++.  ++..+.|+   +++|   +++||.||.|+|++|. +.+.+
T Consensus       148 i~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~--~~~~~~V~---t~~g---~i~a~~vV~AaG~~s~~l~~~~  213 (276)
T d1ryia1         148 VEPYFVCKAYVKAAKMLGAEIFEHTPVLHVER--DGEALFIK---TPSG---DVWANHVVVASGVWSGMFFKQL  213 (276)
T ss_dssp             CCHHHHHHHHHHHHHHTTCEEETTCCCCEEEC--SSSSEEEE---ETTE---EEEEEEEEECCGGGTHHHHHHT
T ss_pred             eecccchhHHHHHHHHcCCEEecceEEEeEEe--ecceEEEe---cCCe---EEEcCEEEECCCccHHHHHhhc
Confidence            455666777777665 578 999999999985  34456665   4555   3899999999999985 44444

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.30  E-value=1.3e-11  Score=112.35  Aligned_cols=166  Identities=17%  Similarity=0.145  Sum_probs=90.1

Q ss_pred             CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCc-ceeccCh-----------hHHHHHHHH---h--c
Q 014324            4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTG-AGLGLDR-----------PAQRIIQSW---L--N   66 (426)
Q Consensus         4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~-~~~~l~~-----------~~~~~l~~~---~--~   66 (426)
                      .+++||+|||||++||++|+.|+++|.+|+|+||.+..+..+... .++....           .....++.+   +  .
T Consensus        17 ~e~~DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~~~gG~S~~a~Ggi~a~~~~~~~~~g~~d~~~~~~~d~~~~~~~~   96 (317)
T d1qo8a2          17 SETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHGVEDKVEWFIEDAMKGGRQQ   96 (317)
T ss_dssp             SEEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTC
T ss_pred             CCccCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchhhcCCCcccccchhhhhcccCCcHHHHHHHHHHhhccc
Confidence            356899999999999999999999999999999998765322111 1221110           000111110   0  0


Q ss_pred             C--------------CchhhhccCcceeeccccccccccccccccccCCCcchhccHHHHHHHHHhcCC-CCe-eEeeee
Q 014324           67 G--------------RPHLLHLATVPLTIDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALP-PEI-FLRGHQ  130 (426)
Q Consensus        67 ~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~  130 (426)
                      .              ..+.+.+.+.++...  ....+.........   ... ...-..+.+.|.+.++ .++ ++++++
T Consensus        97 ~d~~lv~~~~~~a~~~i~~l~~~Gv~~~~~--~~~gg~~~~r~~~~---~~g-~~~g~~i~~~L~~~~~~~g~~i~~~~~  170 (317)
T d1qo8a2          97 NDIKLVTILAEQSADGVQWLESLGANLDDL--KRSGGARVDRTHRP---HGG-KSSGPEIIDTLRKAAKEQGIDTRLNSR  170 (317)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHTTCCCCEE--ECCTTCSSCCEEEC---SSS-SCHHHHHHHHHHHHHHHTTCCEECSEE
T ss_pred             cchhHHHHHHhhhhhhhhhHHHhhhccccc--ccccCccccccccc---ccc-cccchhhhHHHHHHhhhccceeeeccc
Confidence            0              000111111111000  00000000000000   000 0111345556666554 577 999999


Q ss_pred             EEEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCchhhhhh
Q 014324          131 YLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSIRQS  176 (426)
Q Consensus       131 v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~vR~~  176 (426)
                      ++++..++++..+-|.+. ..+++...+.|+.||.|+|.++.-.+.
T Consensus       171 v~~l~~~~~g~V~Gv~~~-~~~~~~~~i~Ak~VVlAtGG~~~n~~~  215 (317)
T d1qo8a2         171 VVKLVVNDDHSVVGAVVH-GKHTGYYMIGAKSVVLATGGYGMNKEM  215 (317)
T ss_dssp             EEEEEECTTSBEEEEEEE-ETTTEEEEEEEEEEEECCCCCTTCHHH
T ss_pred             hhheeecccccceeeEee-cccceEEEEeccceEEeccccccCHHH
Confidence            999887666544445444 356777779999999999998765443

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=99.26  E-value=1.3e-11  Score=112.89  Aligned_cols=168  Identities=17%  Similarity=0.136  Sum_probs=92.4

Q ss_pred             CCCCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCc-ceec--cC---hhHHH-----HHH--------
Q 014324            2 EKKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTG-AGLG--LD---RPAQR-----IIQ--------   62 (426)
Q Consensus         2 ~~~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~-~~~~--l~---~~~~~-----~l~--------   62 (426)
                      ++++++||+|||+|+|||++|+.++++|.+|+|+||.+..+..+... .|+.  +.   +.+.+     .++        
T Consensus         3 ~~~~~~DVlVVG~G~AGl~AAl~aa~~G~~V~lleK~~~~gg~s~~A~GGi~a~~~~~~~Ds~e~~~~Dtl~aG~~l~d~   82 (330)
T d1neka2           3 LPVREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQ   82 (330)
T ss_dssp             CCEEEESCEEECCSHHHHHHHHHHHHTTCCCEEECSSCGGGSGGGGCCSCEECCCCSSSCCCHHHHHHHHHHHHTSCSCH
T ss_pred             CCcccCCEEEECcCHHHHHHHHHHHHcCCeEEEEeCCCCCCCcHHHHhhhHheEcCCCCCCCHHHHHHHHHHhhhhccCH
Confidence            44568999999999999999999999999999999987654322110 1221  11   01111     111        


Q ss_pred             -------HHhcCCchhhhccCcceeecccccccccccc-----ccccccCCCcch-----hccHHHHHHHHHhcCC-CCe
Q 014324           63 -------SWLNGRPHLLHLATVPLTIDQNQATDNAKVT-----RTLARDDNFNFR-----AAHWADLHGLLYNALP-PEI  124 (426)
Q Consensus        63 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~-----~~~r~~l~~~L~~~~~-~~~  124 (426)
                             +-.....+.+...+.++..    ..++....     ............     ...=..+.+.|.+.+. .++
T Consensus        83 ~~v~~l~~~~~~~i~~L~~~Gv~f~~----~~~g~~~~~~~g~~s~~~~~~~~~~~~~~~d~~G~~i~~~L~~~~~~~~v  158 (330)
T d1neka2          83 DAIEYMCKTGPEAILELEHMGLPFSR----LDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHT  158 (330)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCCB----CSCBTTBCCCSSBCEEECTTSSSEEEECCTTCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhHHHHHHHhhccccccc----cCCCceehhccCcccccccCcccccccccCCccHHHHHHHHHHHHHhcCC
Confidence                   1111001122233332211    11111000     000000000000     0011345555655543 466


Q ss_pred             -eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEeccCCchhh
Q 014324          125 -FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVAADGCLSSI  173 (426)
Q Consensus       125 -i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~AdG~~S~v  173 (426)
                       ++..+.+.++...+++..+.+...+..+|+...+.++.||.|+|....+
T Consensus       159 ~~~~~~~~~~l~~~~~~~~~g~~~~~~~~g~~~~~~a~~vIlAtGG~~~l  208 (330)
T d1neka2         159 TIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAGRI  208 (330)
T ss_dssp             EEECSEEEEEEEECTTSCEEEEEEEETTTCCEEEEEESCEEECCCCCGGG
T ss_pred             eEEEEEEEEEeeeeccccceeeeeEEccCCcEEEEeccEEEEcCCCcccc
Confidence             7778888888775565555555555788988889999999999998765

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=99.18  E-value=1.6e-11  Score=111.04  Aligned_cols=62  Identities=19%  Similarity=0.162  Sum_probs=43.6

Q ss_pred             ccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEE-EEEEeccCCceEEEeecEEEeccCCchh-hhhh
Q 014324          107 AHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVT-VKAKVLQTDEVIEIKGNLLVAADGCLSS-IRQS  176 (426)
Q Consensus       107 ~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~-v~~~~~~~g~~~~~~~d~vI~AdG~~S~-vR~~  176 (426)
                      ++-..+...|.+.+. .|+ ++.+++|++++.+++  .++ |.   +++|   +++||.||.|.|.+|+ +.+.
T Consensus       145 ~~p~~l~~~l~~~a~~~gv~i~~~~~V~~i~~~~~--~v~~V~---T~~g---~i~a~~VV~aaG~~s~~l~~~  210 (305)
T d1pj5a2         145 ASAARAVQLLIKRTESAGVTYRGSTTVTGIEQSGG--RVTGVQ---TADG---VIPADIVVSCAGFWGAKIGAM  210 (305)
T ss_dssp             ECHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETT--EEEEEE---ETTE---EEECSEEEECCGGGHHHHHHT
T ss_pred             cchhhhhhhHHhhhhcccccccCCceEEEEEEeCC--EEEEEe---ccce---eEECCEEEEecchhHHHHHHH
Confidence            344566666666554 588 999999999997544  333 44   4555   3899999999999986 3343

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=99.14  E-value=1.5e-10  Score=102.98  Aligned_cols=140  Identities=14%  Similarity=0.193  Sum_probs=79.2

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHc-CCcEEEEcccCCCCCCCCCcc----eeccChhHHHHHHHHhcCCchhhhccCcce
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRA-GWDVVVLEKAGGPPTGSPTGA----GLGLDRPAQRIIQSWLNGRPHLLHLATVPL   79 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~-G~~v~v~E~~~~~~~~~~~~~----~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~   79 (426)
                      ..+||+||||||+||++|+.|+++ |++|+||||++.++.....+.    ...+.......++.++..           .
T Consensus        32 ~e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~GG~~~~~g~~~~~~~~~~~~~~~~~~~g~~-----------~  100 (278)
T d1rp0a1          32 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVA-----------Y  100 (278)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCC-----------C
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCCCCceeecCEEcCHHHHhhhHHHHHHHcCCc-----------e
Confidence            468999999999999999999875 999999999998764221110    111222233333333321           0


Q ss_pred             eeccccccccccccccccccCCCcchhccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEe--------
Q 014324           80 TIDQNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKV--------  149 (426)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~--------  149 (426)
                      ..                 ..........+..+..++.+.+. .+. +..++.+.++...++...-.+....        
T Consensus       101 ~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~gv~~~~~~~~~~~~~  163 (278)
T d1rp0a1         101 DE-----------------QDTYVVVKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHT  163 (278)
T ss_dssp             EE-----------------CSSEEEESCHHHHHHHHHHHHHTSTTEEEEETEEEEEEEEETTEEEEEEEEEHHHHTCTTT
T ss_pred             ec-----------------CCccceecccHHHHHHHHHHHHHhCCCEEEeCCcceeeeecCCeEEEEEeccceeeeeecc
Confidence            00                 00001111233556666655444 355 8888888887764432111111000        


Q ss_pred             ccCCceEEEeecEEEeccCCchh
Q 014324          150 LQTDEVIEIKGNLLVAADGCLSS  172 (426)
Q Consensus       150 ~~~g~~~~~~~d~vI~AdG~~S~  172 (426)
                      .......+++++++|+|+|....
T Consensus       164 ~~~~~~~~~~a~~vv~a~G~~~~  186 (278)
T d1rp0a1         164 QSCMDPNVMEAKIVVSSCGHDGP  186 (278)
T ss_dssp             SSCCCCEEEEEEEEEECCCSSST
T ss_pred             cccccceeeccceEEECcCCCcc
Confidence            01122345899999999997654

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=99.09  E-value=3.6e-10  Score=101.89  Aligned_cols=37  Identities=35%  Similarity=0.525  Sum_probs=34.8

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPT   43 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~   43 (426)
                      +||+||||||+||++|+.|+++|++|+|||+++.++.
T Consensus         1 m~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG   37 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGG   37 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBT
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCc
Confidence            5899999999999999999999999999999998754

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.07  E-value=1.1e-09  Score=83.90  Aligned_cols=99  Identities=19%  Similarity=0.264  Sum_probs=75.1

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ   85 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   85 (426)
                      +.+++|||||+.|+-+|..|++.|.+|+|+|+.+.+.+      .  +.+...                           
T Consensus        23 p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l~------~--~d~ei~---------------------------   67 (122)
T d1v59a2          23 PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGA------S--MDGEVA---------------------------   67 (122)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSS------S--SCHHHH---------------------------
T ss_pred             CCeEEEECCCchHHHHHHHHHhhCcceeEEEeccccch------h--hhhhhH---------------------------
Confidence            45899999999999999999999999999999887531      0  111000                           


Q ss_pred             ccccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEE
Q 014324           86 ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLV  164 (426)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI  164 (426)
                                              ..+++.|.+   .|+ +++++++.+++.++++..+.+++.+.+.++..+++||+|+
T Consensus        68 ------------------------~~l~~~l~~---~GV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~~~~~ie~D~vl  120 (122)
T d1v59a2          68 ------------------------KATQKFLKK---QGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLL  120 (122)
T ss_dssp             ------------------------HHHHHHHHH---TTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEE
T ss_pred             ------------------------HHHHHHHHh---ccceEEeCCEEEEEEEeCCCcEEEEEEEeCCCCCeEEEEeCEEE
Confidence                                    223333332   478 9999999999988887788887666666777789999998


Q ss_pred             ec
Q 014324          165 AA  166 (426)
Q Consensus       165 ~A  166 (426)
                      .|
T Consensus       121 vA  122 (122)
T d1v59a2         121 VA  122 (122)
T ss_dssp             EC
T ss_pred             EC
Confidence            76

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=99.06  E-value=2.2e-10  Score=103.45  Aligned_cols=38  Identities=29%  Similarity=0.354  Sum_probs=33.9

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPT   43 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~   43 (426)
                      .++||+|||+|+|||++|+.+++.| +|+|+||.+..+.
T Consensus         6 ~~~DVvVVG~G~AGl~AA~~a~~~g-~V~llEK~~~~gG   43 (305)
T d1chua2           6 HSCDVLIIGSGAAGLSLALRLADQH-QVIVLSKGPVTEG   43 (305)
T ss_dssp             EECSEEEECCSHHHHHHHHHHTTTS-CEEEECSSCTTC-
T ss_pred             ccCCEEEECccHHHHHHHHHhhcCC-CEEEEECCCCCCC
Confidence            4699999999999999999999888 9999999987643

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=99.06  E-value=4.5e-10  Score=102.78  Aligned_cols=40  Identities=40%  Similarity=0.540  Sum_probs=36.3

Q ss_pred             CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 014324            4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPT   43 (426)
Q Consensus         4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~   43 (426)
                      .+..+|+||||||+||++|+.|+++|++|+|||+.+.++.
T Consensus        28 ~~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~~GG   67 (370)
T d2iida1          28 SNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGG   67 (370)
T ss_dssp             SSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBT
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCC
Confidence            3456999999999999999999999999999999988753

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.05  E-value=7.5e-10  Score=84.20  Aligned_cols=95  Identities=14%  Similarity=0.141  Sum_probs=69.5

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ   85 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   85 (426)
                      +.+|+|||||++|+-+|..|++.|.+|+|+|+.+.+.+      .  +.+...                           
T Consensus        21 p~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l~------~--~d~~~~---------------------------   65 (116)
T d1gesa2          21 PERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLP------S--FDPMIS---------------------------   65 (116)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST------T--SCHHHH---------------------------
T ss_pred             CCEEEEECCChhhHHHHHHhhccccEEEEEeecchhhh------h--cchhhH---------------------------
Confidence            35799999999999999999999999999999987421      0  110000                           


Q ss_pred             ccccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEE
Q 014324           86 ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLV  164 (426)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI  164 (426)
                                              ..+.+.|.+   .|+ +++++++..+..+++ ..++++   +++|++  +++|.||
T Consensus        66 ------------------------~~~~~~l~~---~GV~~~~~~~v~~i~~~~~-~~~~v~---~~~g~~--~~~D~vi  112 (116)
T d1gesa2          66 ------------------------ETLVEVMNA---EGPQLHTNAIPKAVVKNTD-GSLTLE---LEDGRS--ETVDCLI  112 (116)
T ss_dssp             ------------------------HHHHHHHHH---HSCEEECSCCEEEEEECTT-SCEEEE---ETTSCE--EEESEEE
T ss_pred             ------------------------HHHHHHHHH---CCCEEEeCCEEEEEEEcCC-cEEEEE---ECCCCE--EEcCEEE
Confidence                                    222233332   378 999999999986433 456666   678876  8999999


Q ss_pred             eccC
Q 014324          165 AADG  168 (426)
Q Consensus       165 ~AdG  168 (426)
                      .|.|
T Consensus       113 ~a~G  116 (116)
T d1gesa2         113 WAIG  116 (116)
T ss_dssp             ECSC
T ss_pred             EecC
Confidence            9988

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=98.99  E-value=3.7e-09  Score=89.31  Aligned_cols=35  Identities=26%  Similarity=0.305  Sum_probs=32.8

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      .||||||||||||+.||++++|.|.++.||+++..
T Consensus         2 ~YDVIVIGgG~AG~eAA~~aAR~G~ktllit~~~~   36 (230)
T d2cula1           2 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLD   36 (230)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGG
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCcEEEEEeccc
Confidence            59999999999999999999999999999998753

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=98.98  E-value=2.1e-09  Score=83.68  Aligned_cols=96  Identities=20%  Similarity=0.297  Sum_probs=71.1

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ   85 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   85 (426)
                      ..+|+|||||++|+-+|..|++.|.+|+|+|+.+.+..     ..  +.                               
T Consensus        35 ~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l~-----~~--~~-------------------------------   76 (133)
T d1q1ra2          35 DNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLE-----RV--TA-------------------------------   76 (133)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTT-----TT--SC-------------------------------
T ss_pred             CCEEEEECCchHHHHHHHHHHhhCcceeeeeecccccc-----cc--cc-------------------------------
Confidence            46899999999999999999999999999999987531     00  00                               


Q ss_pred             ccccccccccccccCCCcchhccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEE-EEEEeccCCceEEEeecE
Q 014324           86 ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVT-VKAKVLQTDEVIEIKGNL  162 (426)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~-v~~~~~~~g~~~~~~~d~  162 (426)
                                              ..+.+.+.+.++ .|+ ++++++++.++...++..++ +.   +++|++  +.+|+
T Consensus        77 ------------------------~~~~~~~~~~~~~~GV~i~~~~~v~~i~~~~~~~~v~~v~---~~~G~~--i~~D~  127 (133)
T d1q1ra2          77 ------------------------PPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVL---CEDGTR--LPADL  127 (133)
T ss_dssp             ------------------------HHHHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEE---ETTSCE--EECSE
T ss_pred             ------------------------hhhhhhhhhcccccccEEEeCCeEEEEEEeCCCceEEEEE---CCCCCE--EECCE
Confidence                                    111122223222 478 99999999998766555554 44   788886  89999


Q ss_pred             EEeccC
Q 014324          163 LVAADG  168 (426)
Q Consensus       163 vI~AdG  168 (426)
                      ||.|.|
T Consensus       128 vi~a~G  133 (133)
T d1q1ra2         128 VIAGIG  133 (133)
T ss_dssp             EEECCC
T ss_pred             EEEeeC
Confidence            999987

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.96  E-value=5.4e-09  Score=96.14  Aligned_cols=38  Identities=26%  Similarity=0.415  Sum_probs=33.9

Q ss_pred             CccEEEEcCChHHHHHHHHHHH----cCCcEEEEcccCCCCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLR----AGWDVVVLEKAGGPPT   43 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~----~G~~v~v~E~~~~~~~   43 (426)
                      .+||+|||+|+|||++|+.|++    +|.+|+|+||.+..+.
T Consensus        21 e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~~gg   62 (356)
T d1jnra2          21 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERS   62 (356)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTTTC
T ss_pred             ecCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCCCCCC
Confidence            5899999999999999999976    6999999999887654

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=1.9e-09  Score=99.20  Aligned_cols=59  Identities=27%  Similarity=0.333  Sum_probs=44.6

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCC-----------Ccce--eccChhHHHHHHHHhc
Q 014324            8 KAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSP-----------TGAG--LGLDRPAQRIIQSWLN   66 (426)
Q Consensus         8 ~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~-----------~~~~--~~l~~~~~~~l~~~~~   66 (426)
                      ||||||||++||++|+.|+++|++|+|||+++.++....           .|..  ....+...++++++|+
T Consensus         1 DViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~~~GGr~~t~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl   72 (383)
T d2v5za1           1 DVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQNRILRLAKELGL   72 (383)
T ss_dssp             SEEEECCBHHHHHHHHHHHHTTCCEEEEESSSSSBTTCCEECCTTTSCEESSCCEECTTCHHHHHHHHHTTC
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcceeeEEECCCCcEEeCCceEeCCCChHHHHHHHHcCC
Confidence            899999999999999999999999999999998753210           1111  1124556677888876

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.92  E-value=7.8e-09  Score=78.75  Aligned_cols=96  Identities=22%  Similarity=0.230  Sum_probs=68.8

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ   85 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   85 (426)
                      ..+|+|||||+.|+-+|..|++.|.+|+|+|+...+.+      .  +.                               
T Consensus        22 p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll~------~--~d-------------------------------   62 (119)
T d3lada2          22 PGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLP------A--VD-------------------------------   62 (119)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST------T--SC-------------------------------
T ss_pred             CCeEEEECCChHHHHHHHHHHHcCCceEEEEeecccCC------c--cc-------------------------------
Confidence            46899999999999999999999999999999987531      0  11                               


Q ss_pred             ccccccccccccccCCCcchhccHHHHHHHHHhcC-CCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEE
Q 014324           86 ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNAL-PPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLL  163 (426)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~-~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~v  163 (426)
                                              .++.+.+.+.+ +.|+ ++.++++++++.+++  .+++++.+  .+...++.||.|
T Consensus        63 ------------------------~ei~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~--~v~v~~~~--~~~~~~~~~D~v  114 (119)
T d3lada2          63 ------------------------EQVAKEAQKILTKQGLKILLGARVTGTEVKNK--QVTVKFVD--AEGEKSQAFDKL  114 (119)
T ss_dssp             ------------------------HHHHHHHHHHHHHTTEEEEETCEEEEEEECSS--CEEEEEES--SSEEEEEEESEE
T ss_pred             ------------------------chhHHHHHHHHHhcCceeecCcEEEEEEEeCC--EEEEEEEE--CCCCEEEECCEE
Confidence                                    11222233333 2588 999999999986544  55555432  223346899999


Q ss_pred             EeccC
Q 014324          164 VAADG  168 (426)
Q Consensus       164 I~AdG  168 (426)
                      +.|.|
T Consensus       115 lvAvG  119 (119)
T d3lada2         115 IVAVG  119 (119)
T ss_dssp             EECSC
T ss_pred             EEeeC
Confidence            99987

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.91  E-value=5.1e-09  Score=80.37  Aligned_cols=98  Identities=19%  Similarity=0.163  Sum_probs=71.4

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ   85 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   85 (426)
                      ..+++|||||..|+-+|..+++.|.+|+|+|+.+.+.+     .   +.                               
T Consensus        26 p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il~-----~---~d-------------------------------   66 (125)
T d1ojta2          26 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQ-----G---AD-------------------------------   66 (125)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSST-----T---SC-------------------------------
T ss_pred             CCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeeccccc-----c---ch-------------------------------
Confidence            35899999999999999999999999999999887431     0   11                               


Q ss_pred             ccccccccccccccCCCcchhccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEE
Q 014324           86 ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLL  163 (426)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~v  163 (426)
                                              .++.+.+.+.++ .|+ ++.++++.+++.++++  +.+++. ..+|+.++++||+|
T Consensus        67 ------------------------~~~~~~l~~~l~~~gv~~~~~~~v~~v~~~~~g--~~v~~~-~~~g~~~~i~~D~v  119 (125)
T d1ojta2          67 ------------------------RDLVKVWQKQNEYRFDNIMVNTKTVAVEPKEDG--VYVTFE-GANAPKEPQRYDAV  119 (125)
T ss_dssp             ------------------------HHHHHHHHHHHGGGEEEEECSCEEEEEEEETTE--EEEEEE-SSSCCSSCEEESCE
T ss_pred             ------------------------hhHHHHHHHHHHHcCcccccCcEEEEEEEcCCc--EEEEEE-eCCCCeEEEEcCEE
Confidence                                    112222333333 477 9999999999976554  444432 45566556999999


Q ss_pred             EeccCC
Q 014324          164 VAADGC  169 (426)
Q Consensus       164 I~AdG~  169 (426)
                      +.|.|.
T Consensus       120 l~A~GR  125 (125)
T d1ojta2         120 LVAAGR  125 (125)
T ss_dssp             EECCCE
T ss_pred             EEecCC
Confidence            999984

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.91  E-value=7.2e-09  Score=78.81  Aligned_cols=94  Identities=22%  Similarity=0.231  Sum_probs=67.5

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ   85 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   85 (426)
                      ..+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+..      .+  .+..                            
T Consensus        22 p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il~------~~--d~~~----------------------------   65 (117)
T d1ebda2          22 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILS------GF--EKQM----------------------------   65 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST------TS--CHHH----------------------------
T ss_pred             CCeEEEECCCccceeeeeeecccccEEEEEEecceecc------cc--cchh----------------------------
Confidence            36899999999999999999999999999999987521      00  0000                            


Q ss_pred             ccccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEE
Q 014324           86 ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLV  164 (426)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI  164 (426)
                                             ...+.+.|.   +.|+ +++++++++++..++  .+++++  ..+|+..++++|.||
T Consensus        66 -----------------------~~~l~~~l~---~~GI~i~~~~~v~~i~~~~~--~~~v~~--~~~g~~~~i~~D~Vl  115 (117)
T d1ebda2          66 -----------------------AAIIKKRLK---KKGVEVVTNALAKGAEERED--GVTVTY--EANGETKTIDADYVL  115 (117)
T ss_dssp             -----------------------HHHHHHHHH---HTTCEEEESEEEEEEEEETT--EEEEEE--EETTEEEEEEESEEE
T ss_pred             -----------------------HHHHHHHHH---hcCCEEEcCCEEEEEEEcCC--EEEEEE--EeCCCEEEEEeEEEE
Confidence                                   022233333   2578 999999999986554  455443  356777779999998


Q ss_pred             e
Q 014324          165 A  165 (426)
Q Consensus       165 ~  165 (426)
                      .
T Consensus       116 v  116 (117)
T d1ebda2         116 V  116 (117)
T ss_dssp             E
T ss_pred             E
Confidence            5

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.90  E-value=5.9e-10  Score=97.63  Aligned_cols=39  Identities=15%  Similarity=0.144  Sum_probs=36.6

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPT   43 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~   43 (426)
                      ..|||||||||++||++|+.|+++|++|+||||++.++.
T Consensus         4 ~~yDviViGaG~~Gl~~A~~La~~G~~V~vlE~~~~~GG   42 (297)
T d2bcgg1           4 TDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGG   42 (297)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCG
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCc
Confidence            579999999999999999999999999999999998753

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.89  E-value=5.2e-09  Score=80.26  Aligned_cols=97  Identities=18%  Similarity=0.194  Sum_probs=70.1

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ   85 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   85 (426)
                      ..+++|||||..|+-+|..|++.|.+|+|+|+.+.+.+      .  +.+..                            
T Consensus        25 p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l~------~--~d~~~----------------------------   68 (123)
T d1dxla2          25 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVP------T--MDAEI----------------------------   68 (123)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSST------T--SCHHH----------------------------
T ss_pred             CCeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccCc------h--hhhcc----------------------------
Confidence            35899999999999999999999999999999987531      0  11100                            


Q ss_pred             ccccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEE
Q 014324           86 ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLV  164 (426)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI  164 (426)
                                             ...+.+.|.+   .|+ ++.++++.+++..++  .+++++...++|+..+++||+|+
T Consensus        69 -----------------------~~~l~~~l~~---~GI~i~~~~~v~~i~~~~~--~~~v~~~~~~~g~~~~i~~D~vL  120 (123)
T d1dxla2          69 -----------------------RKQFQRSLEK---QGMKFKLKTKVVGVDTSGD--GVKLTVEPSAGGEQTIIEADVVL  120 (123)
T ss_dssp             -----------------------HHHHHHHHHH---SSCCEECSEEEEEEECSSS--SEEEEEEESSSCCCEEEEESEEE
T ss_pred             -----------------------hhhhhhhhhc---ccceEEcCCceEEEEEccC--eEEEEEEECCCCeEEEEEcCEEE
Confidence                                   0223333332   478 999999999995444  55555554567777779999998


Q ss_pred             ec
Q 014324          165 AA  166 (426)
Q Consensus       165 ~A  166 (426)
                      .|
T Consensus       121 vA  122 (123)
T d1dxla2         121 VS  122 (123)
T ss_dssp             CC
T ss_pred             Ec
Confidence            76

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.85  E-value=8.2e-09  Score=78.19  Aligned_cols=36  Identities=28%  Similarity=0.350  Sum_probs=33.5

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP   41 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   41 (426)
                      +.+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+
T Consensus        21 p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~i   56 (115)
T d1lvla2          21 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERI   56 (115)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHhhcccceEEEeeeccc
Confidence            368999999999999999999999999999999874

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=98.84  E-value=1.5e-08  Score=77.29  Aligned_cols=36  Identities=28%  Similarity=0.433  Sum_probs=33.7

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP   41 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   41 (426)
                      ..+|+|||||++|+-+|..|+++|.+|+++|+.+.+
T Consensus        30 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~   65 (121)
T d1d7ya2          30 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRL   65 (121)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred             CCeEEEECcchhHHHHHHHhhcccceEEEEeecccc
Confidence            468999999999999999999999999999998875

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.84  E-value=1.6e-08  Score=77.42  Aligned_cols=99  Identities=15%  Similarity=0.168  Sum_probs=68.7

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ   85 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   85 (426)
                      ..+|+|||||+.|+-+|..|++.|.+|+++|+.+.+..      +  +.+..                            
T Consensus        22 ~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l~------~--~d~~~----------------------------   65 (121)
T d1mo9a2          22 GSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKL------I--KDNET----------------------------   65 (121)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTT------C--CSHHH----------------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcchhheEeeccchhhc------c--cccch----------------------------
Confidence            36899999999999999999999999999999886431      1  11100                            


Q ss_pred             ccccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEE
Q 014324           86 ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLV  164 (426)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI  164 (426)
                                             +..+++.|.+   .++ ++++++++.++.++++....+..  ...+...+++||+||
T Consensus        66 -----------------------~~~~~~~l~~---~gI~v~~~~~v~~i~~~~~~~~~~~~~--~~~~~~~~i~~D~Vi  117 (121)
T d1mo9a2          66 -----------------------RAYVLDRMKE---QGMEIISGSNVTRIEEDANGRVQAVVA--MTPNGEMRIETDFVF  117 (121)
T ss_dssp             -----------------------HHHHHHHHHH---TTCEEESSCEEEEEEECTTSBEEEEEE--EETTEEEEEECSCEE
T ss_pred             -----------------------hhhhhhhhhc---cccEEEcCCEEEEEEecCCceEEEEEE--EeCCCCEEEEcCEEE
Confidence                                   0222233321   467 99999999999765544333332  233444469999999


Q ss_pred             eccC
Q 014324          165 AADG  168 (426)
Q Consensus       165 ~AdG  168 (426)
                      .|.|
T Consensus       118 ~a~G  121 (121)
T d1mo9a2         118 LGLG  121 (121)
T ss_dssp             ECCC
T ss_pred             EEEC
Confidence            9987

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=98.83  E-value=1.6e-09  Score=88.58  Aligned_cols=38  Identities=21%  Similarity=0.301  Sum_probs=35.6

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP   42 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~   42 (426)
                      ...+|+|||||||||++|+.|+++|++|+|||+.+.++
T Consensus        42 ~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~G   79 (179)
T d1ps9a3          42 QKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIG   79 (179)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSC
T ss_pred             CCcEEEEECccHHHHHHHHHHHhhccceEEEeccCccC
Confidence            45799999999999999999999999999999999864

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.82  E-value=1.8e-08  Score=76.29  Aligned_cols=93  Identities=13%  Similarity=0.178  Sum_probs=67.6

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ   85 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   85 (426)
                      ..+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+.+      .  +.                               
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~il~------~--~d-------------------------------   62 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILR------K--FD-------------------------------   62 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCT------T--SC-------------------------------
T ss_pred             CCEEEEECCchHHHHHHHHHHhccccceeeehhccccc------c--cc-------------------------------
Confidence            45899999999999999999999999999999887421      0  11                               


Q ss_pred             ccccccccccccccCCCcchhccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEE
Q 014324           86 ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLL  163 (426)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~v  163 (426)
                                              ..+.+.+.+.++ .|+ +++++++.+++..++ ..++++   +++|+.. ..+|.|
T Consensus        63 ------------------------~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~-~~~~v~---~~~G~~~-~~~D~V  113 (117)
T d1onfa2          63 ------------------------ESVINVLENDMKKNNINIVTFADVVEIKKVSD-KNLSIH---LSDGRIY-EHFDHV  113 (117)
T ss_dssp             ------------------------HHHHHHHHHHHHHTTCEEECSCCEEEEEESST-TCEEEE---ETTSCEE-EEESEE
T ss_pred             ------------------------HHHHHHHHHHHHhCCCEEEECCEEEEEEEcCC-CeEEEE---ECCCCEE-EeCCEE
Confidence                                    112222333322 478 999999999986544 356666   7888863 257999


Q ss_pred             Eec
Q 014324          164 VAA  166 (426)
Q Consensus       164 I~A  166 (426)
                      |-|
T Consensus       114 i~A  116 (117)
T d1onfa2         114 IYC  116 (117)
T ss_dssp             EEC
T ss_pred             EEe
Confidence            876

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.82  E-value=4e-08  Score=75.00  Aligned_cols=99  Identities=28%  Similarity=0.352  Sum_probs=69.5

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ   85 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   85 (426)
                      ..+++|||||+.|+-+|..|++.|.+|+|+++....+       .  +.                               
T Consensus        20 P~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~~~l~-------~--~D-------------------------------   59 (122)
T d1h6va2          20 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLR-------G--FD-------------------------------   59 (122)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSST-------T--SC-------------------------------
T ss_pred             CCeEEEECCCccHHHHHHHHhhcCCeEEEEEechhhc-------c--CC-------------------------------
Confidence            3589999999999999999999999999998643210       0  00                               


Q ss_pred             ccccccccccccccCCCcchhccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCC--ceEEEEEEeccCCceEEEeec
Q 014324           86 ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEVK--TTVTVKAKVLQTDEVIEIKGN  161 (426)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~--~~v~v~~~~~~~g~~~~~~~d  161 (426)
                                              ..+.+.+.+.++ +|+ ++++++++.++..+++  ..+.+++....+++....++|
T Consensus        60 ------------------------~~~~~~l~~~l~~~Gv~i~~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D  115 (122)
T d1h6va2          60 ------------------------QDMANKIGEHMEEHGIKFIRQFVPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFN  115 (122)
T ss_dssp             ------------------------HHHHHHHHHHHHHTTEEEEESCEEEEEEEEECSTTCEEEEEEECTTSCEEEEEEES
T ss_pred             ------------------------HHHHHHHHHHHHHCCCEEEECCEEEEEEEecCCCccEEEEEEEECCCCcEEEEECC
Confidence                                    112222333333 488 9999999999865543  356666554445555567899


Q ss_pred             EEEeccC
Q 014324          162 LLVAADG  168 (426)
Q Consensus       162 ~vI~AdG  168 (426)
                      .|+.|.|
T Consensus       116 ~vl~AiG  122 (122)
T d1h6va2         116 TVLLAVG  122 (122)
T ss_dssp             EEECCCC
T ss_pred             EEEEEeC
Confidence            9999987

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=98.78  E-value=3.3e-09  Score=92.96  Aligned_cols=41  Identities=24%  Similarity=0.452  Sum_probs=36.5

Q ss_pred             CCCCCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324            1 MEKKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP   41 (426)
Q Consensus         1 m~~~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   41 (426)
                      ||...+.+|+|||||++||++|+.|+++|++|+||||....
T Consensus         1 ~~~~~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~~~   41 (268)
T d1c0pa1           1 LMMHSQKRVVVLGSGVIGLSSALILARKGYSVHILARDLPE   41 (268)
T ss_dssp             CCCCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCTT
T ss_pred             CCCCCCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            45557789999999999999999999999999999997643

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.74  E-value=3.9e-09  Score=90.51  Aligned_cols=39  Identities=21%  Similarity=0.311  Sum_probs=35.9

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPT   43 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~   43 (426)
                      ++|||+|||||||||++|+.|++.|.+|+|||+...+..
T Consensus         2 ~kYDviIIGgGpAGl~aA~~aar~G~~V~viE~~~~~~~   40 (229)
T d3lada1           2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEG   40 (229)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecccCCCc
Confidence            679999999999999999999999999999999876543

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.74  E-value=4.2e-08  Score=74.42  Aligned_cols=95  Identities=19%  Similarity=0.147  Sum_probs=67.6

Q ss_pred             CccEEEEcCChHHHHHHHHHHHc---CCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeec
Q 014324            6 KGKAVIVGGSIAGISCAHALLRA---GWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTID   82 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~---G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~   82 (426)
                      ..+|+|||||++|+-+|..|++.   |.+|+++|+.+.+.+      +  +.                            
T Consensus        18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il~------~--~d----------------------------   61 (117)
T d1feca2          18 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILR------G--FD----------------------------   61 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSST------T--SC----------------------------
T ss_pred             CCeEEEECCChHHHHHHHHhHhhcccccccceecccccccc------c--cc----------------------------
Confidence            35899999999999999876654   889999999876421      0  11                            


Q ss_pred             cccccccccccccccccCCCcchhccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEee
Q 014324           83 QNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKG  160 (426)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~  160 (426)
                                                 .++.+.+.+.++ .|+ +++++++.+++.++++ ...++   +++|+.  +.|
T Consensus        62 ---------------------------~~~~~~~~~~l~~~GI~v~~~~~v~~i~~~~~g-~~~v~---~~~g~~--i~~  108 (117)
T d1feca2          62 ---------------------------SELRKQLTEQLRANGINVRTHENPAKVTKNADG-TRHVV---FESGAE--ADY  108 (117)
T ss_dssp             ---------------------------HHHHHHHHHHHHHTTEEEEETCCEEEEEECTTS-CEEEE---ETTSCE--EEE
T ss_pred             ---------------------------chhhHHHHHHHhhCcEEEEcCCEEEEEEECCCC-EEEEE---ECCCCE--EEc
Confidence                                       111122333332 488 9999999999865443 34454   688886  899


Q ss_pred             cEEEeccCC
Q 014324          161 NLLVAADGC  169 (426)
Q Consensus       161 d~vI~AdG~  169 (426)
                      |+||.|.|.
T Consensus       109 D~Vi~a~GR  117 (117)
T d1feca2         109 DVVMLAIGR  117 (117)
T ss_dssp             SEEEECSCE
T ss_pred             CEEEEecCC
Confidence            999999984

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=4.1e-08  Score=76.68  Aligned_cols=94  Identities=23%  Similarity=0.252  Sum_probs=67.7

Q ss_pred             ccEEEEcCChHHHHHHHHHHH----cCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeec
Q 014324            7 GKAVIVGGSIAGISCAHALLR----AGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTID   82 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~----~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~   82 (426)
                      .+|+|||||++|+-+|..|++    .|.+|+++|+.+.+-.     ..  +.                            
T Consensus        38 k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~-----~~--~~----------------------------   82 (137)
T d1m6ia2          38 KSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMG-----KI--LP----------------------------   82 (137)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTT-----TT--SC----------------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCCc-----cc--CC----------------------------
Confidence            479999999999999988864    5899999999887421     00  00                            


Q ss_pred             cccccccccccccccccCCCcchhccHHHHHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEee
Q 014324           83 QNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKG  160 (426)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~  160 (426)
                                                 ..+.+.+.+.++ .|+ +++++++.+++.+  +..+.++   +++|+.  +.|
T Consensus        83 ---------------------------~~~~~~~~~~l~~~GV~~~~~~~V~~i~~~--~~~~~v~---l~~G~~--i~a  128 (137)
T d1m6ia2          83 ---------------------------EYLSNWTMEKVRREGVKVMPNAIVQSVGVS--SGKLLIK---LKDGRK--VET  128 (137)
T ss_dssp             ---------------------------HHHHHHHHHHHHTTTCEEECSCCEEEEEEE--TTEEEEE---ETTSCE--EEE
T ss_pred             ---------------------------HHHHHHHHHHHHhCCcEEEeCCEEEEEEec--CCEEEEE---ECCCCE--EEC
Confidence                                       112222333333 488 9999999999864  3456666   678876  899


Q ss_pred             cEEEeccCC
Q 014324          161 NLLVAADGC  169 (426)
Q Consensus       161 d~vI~AdG~  169 (426)
                      |+||.|.|.
T Consensus       129 D~Vi~A~Gv  137 (137)
T d1m6ia2         129 DHIVAAVGL  137 (137)
T ss_dssp             SEEEECCCE
T ss_pred             CEEEEeecC
Confidence            999999984

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.72  E-value=1.5e-08  Score=87.29  Aligned_cols=37  Identities=24%  Similarity=0.390  Sum_probs=34.6

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP   42 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~   42 (426)
                      .|||+||||||||+++|+.+++.|.+|+|+|+.+..+
T Consensus         3 dYDviVIG~GpaGl~aA~~aa~~G~kV~viE~~~~~~   39 (235)
T d1h6va1           3 DFDLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPTP   39 (235)
T ss_dssp             SEEEEEECCSHHHHHHHHHHGGGCCCEEEECCCCCCT
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCC
Confidence            5899999999999999999999999999999987754

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=7.9e-08  Score=73.70  Aligned_cols=98  Identities=17%  Similarity=0.115  Sum_probs=67.8

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccccc
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQA   86 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   86 (426)
                      .+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+.+      .  +.+..                             
T Consensus        23 k~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~l~------~--~d~~~-----------------------------   65 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLR------S--FDSMI-----------------------------   65 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT------T--SCHHH-----------------------------
T ss_pred             CEEEEEcCCccHHHHHHHHhcCCcEEEEEeecccccc------c--hhhHH-----------------------------
Confidence            5899999999999999999999999999999887421      0  11000                             


Q ss_pred             cccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCc----eEEEeec
Q 014324           87 TDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDE----VIEIKGN  161 (426)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~----~~~~~~d  161 (426)
                                            +..+.+.|.+   .|+ ++.++++++++.++++  +.++.....+|.    ...+++|
T Consensus        66 ----------------------~~~~~~~l~~---~Gv~i~~~~~v~~i~~~~~g--~~v~~~~~~~g~~~~~~~~~~~D  118 (125)
T d3grsa2          66 ----------------------STNCTEELEN---AGVEVLKFSQVKEVKKTLSG--LEVSMVTAVPGRLPVMTMIPDVD  118 (125)
T ss_dssp             ----------------------HHHHHHHHHH---TTCEEETTEEEEEEEEETTE--EEEEEEECCTTSCCEEEEEEEES
T ss_pred             ----------------------HHHHHHHHHH---CCCEEEeCCEEEEEEEcCCe--EEEEEEEccCCcCcCccccccCC
Confidence                                  0222333322   478 9999999999876554  333333344543    2346799


Q ss_pred             EEEeccC
Q 014324          162 LLVAADG  168 (426)
Q Consensus       162 ~vI~AdG  168 (426)
                      +||.|.|
T Consensus       119 ~vl~a~G  125 (125)
T d3grsa2         119 CLLWAIG  125 (125)
T ss_dssp             EEEECSC
T ss_pred             EEEEEeC
Confidence            9999987

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.68  E-value=6.9e-08  Score=73.78  Aligned_cols=36  Identities=31%  Similarity=0.527  Sum_probs=33.4

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP   41 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   41 (426)
                      ..+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+
T Consensus        30 ~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~   65 (123)
T d1nhpa2          30 VNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRP   65 (123)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred             CCEEEEECChHHHHHHHHHhhccceEEEEEEecCcc
Confidence            358999999999999999999999999999998864

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.68  E-value=4.6e-09  Score=90.37  Aligned_cols=37  Identities=30%  Similarity=0.462  Sum_probs=34.8

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP   41 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   41 (426)
                      ++|||+||||||||+++|+.|++.|.+|+|||++...
T Consensus         4 ~~yDviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~~   40 (233)
T d1v59a1           4 KSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKL   40 (233)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred             cccCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCc
Confidence            6799999999999999999999999999999998764

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=7.5e-09  Score=94.99  Aligned_cols=64  Identities=25%  Similarity=0.328  Sum_probs=47.8

Q ss_pred             CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCC----------Ccceec---cChhHHHHHHHHhcC
Q 014324            4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSP----------TGAGLG---LDRPAQRIIQSWLNG   67 (426)
Q Consensus         4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~----------~~~~~~---l~~~~~~~l~~~~~~   67 (426)
                      .++.+|+|||||+|||+||+.|+++|++|+|||+++.++....          .|..+.   -.+...++++++|+.
T Consensus         3 ~~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r~GGr~~t~~~~g~~~d~G~~~i~~~~~~~~~~l~~~lgl~   79 (449)
T d2dw4a2           3 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGGNPMAVVSKQVNME   79 (449)
T ss_dssp             SCCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTCCEEEETTEEEESSCCEECCSBTCHHHHHHHHHTCC
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCcccEEEEEeCCEEEECCCEEECCCCCcHHHHHHHHcCCc
Confidence            4567899999999999999999999999999999998864221          122111   122356778888873

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.64  E-value=1.1e-08  Score=87.34  Aligned_cols=38  Identities=26%  Similarity=0.465  Sum_probs=35.4

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP   42 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~   42 (426)
                      ++|||+||||||||+++|+.+++.|.+|+|+|+....+
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~~G   39 (221)
T d1dxla1           2 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALG   39 (221)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCC
Confidence            57999999999999999999999999999999988754

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.64  E-value=8.6e-09  Score=88.54  Aligned_cols=37  Identities=27%  Similarity=0.385  Sum_probs=34.7

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP   41 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   41 (426)
                      ..|||+|||||||||++|+.|++.|.+|+|||+...+
T Consensus         5 ~dyDviIIG~GPaGlsaA~~aa~~G~~V~viE~~~~~   41 (229)
T d1ojta1           5 AEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTL   41 (229)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCS
T ss_pred             CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCCC
Confidence            4699999999999999999999999999999998765

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.63  E-value=7.8e-09  Score=92.51  Aligned_cols=37  Identities=30%  Similarity=0.404  Sum_probs=35.2

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPT   43 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~   43 (426)
                      +||+|||||+|||++|..|+++|++|+|+|+++.++.
T Consensus         2 ~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~iGG   38 (298)
T d1i8ta1           2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGG   38 (298)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSG
T ss_pred             ccEEEECCcHHHHHHHHHHHhCCCcEEEEECCCCccc
Confidence            6999999999999999999999999999999999864

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=98.62  E-value=1e-08  Score=92.44  Aligned_cols=37  Identities=24%  Similarity=0.473  Sum_probs=34.6

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPT   43 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~   43 (426)
                      .+|+|||||||||+||+.|+++|++|+|||+++.++.
T Consensus         2 KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG   38 (373)
T d1seza1           2 KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGG   38 (373)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCCCCcC
Confidence            4799999999999999999999999999999998764

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.61  E-value=6.4e-08  Score=73.90  Aligned_cols=35  Identities=31%  Similarity=0.599  Sum_probs=32.5

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP   41 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   41 (426)
                      .+|+|||||++|+-+|..|++.|.+|+|+|+.+.+
T Consensus        33 ~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l   67 (122)
T d1xhca2          33 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMF   67 (122)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCC
T ss_pred             CcEEEECCcHHHHHHHHHhhcccceEEEEeccccc
Confidence            47999999999999999999999999999988764

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=5.9e-08  Score=82.06  Aligned_cols=38  Identities=16%  Similarity=0.293  Sum_probs=33.1

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCC--cEEEEcccCCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGW--DVVVLEKAGGPP   42 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~--~v~v~E~~~~~~   42 (426)
                      .+++++|||||++|+.+|..|.++|.  +|+++++.+.++
T Consensus         3 ~~~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~p   42 (213)
T d1m6ia1           3 SHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELP   42 (213)
T ss_dssp             SEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCC
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCCC
Confidence            56789999999999999999999876  599999877654

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.58  E-value=1.1e-08  Score=88.39  Aligned_cols=37  Identities=30%  Similarity=0.246  Sum_probs=33.7

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcC-------CcEEEEcccCCCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAG-------WDVVVLEKAGGPP   42 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G-------~~v~v~E~~~~~~   42 (426)
                      +++|+|||||||||+||+.|+++|       ++|+|||+.+.++
T Consensus         2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~G   45 (239)
T d1lqta2           2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPW   45 (239)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCS
T ss_pred             CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCC
Confidence            479999999999999999999998       5799999999864

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.57  E-value=3e-07  Score=69.48  Aligned_cols=93  Identities=15%  Similarity=0.166  Sum_probs=64.2

Q ss_pred             CccEEEEcCChHHHHHHHHHHHc---CCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeec
Q 014324            6 KGKAVIVGGSIAGISCAHALLRA---GWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTID   82 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~---G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~   82 (426)
                      ..+|+|||||+.|+-+|..|+..   |.+|+|+|+.+.+.+      .  +.+..                         
T Consensus        20 p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL~------~--~d~~~-------------------------   66 (117)
T d1aoga2          20 PRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILR------G--FDHTL-------------------------   66 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSST------T--SCHHH-------------------------
T ss_pred             CCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhhc------c--cchHH-------------------------
Confidence            35899999999999999877654   567999999776421      0  11000                         


Q ss_pred             cccccccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeec
Q 014324           83 QNQATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGN  161 (426)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d  161 (426)
                                                +..+++.|.+   .|+ +++++++.+++...+ ..++++   +++|++  ++||
T Consensus        67 --------------------------~~~l~~~l~~---~GV~v~~~~~v~~ie~~~~-~~~~v~---~~~G~~--i~~D  111 (117)
T d1aoga2          67 --------------------------REELTKQLTA---NGIQILTKENPAKVELNAD-GSKSVT---FESGKK--MDFD  111 (117)
T ss_dssp             --------------------------HHHHHHHHHH---TTCEEEESCCEEEEEECTT-SCEEEE---ETTSCE--EEES
T ss_pred             --------------------------HHHHHHHHHh---cCcEEEcCCEEEEEEEcCC-CeEEEE---ECCCcE--EEeC
Confidence                                      0223333332   488 999999999986444 345566   788886  8999


Q ss_pred             EEEec
Q 014324          162 LLVAA  166 (426)
Q Consensus       162 ~vI~A  166 (426)
                      .||-|
T Consensus       112 ~Vi~A  116 (117)
T d1aoga2         112 LVMMA  116 (117)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            99876

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.57  E-value=1.6e-08  Score=85.99  Aligned_cols=35  Identities=17%  Similarity=0.289  Sum_probs=32.7

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAG   39 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~   39 (426)
                      ++|||+||||||+|+++|+.+++.|.+|+|+|+..
T Consensus         1 k~yDvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~~   35 (217)
T d1gesa1           1 KHYDYIAIGGGSGGIASINRAAMYGQKCALIEAKE   35 (217)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEeccC
Confidence            36999999999999999999999999999999853

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.56  E-value=2.4e-08  Score=83.27  Aligned_cols=36  Identities=36%  Similarity=0.583  Sum_probs=33.2

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCC-cEEEEcccCCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGW-DVVVLEKAGGP   41 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~~   41 (426)
                      ..+|+||||||+||++|..|+++|+ +|+||||.+..
T Consensus         4 ~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~   40 (196)
T d1gtea4           4 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYV   40 (196)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSC
T ss_pred             CCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcc
Confidence            4689999999999999999999999 59999998875

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.54  E-value=2.3e-08  Score=82.51  Aligned_cols=33  Identities=24%  Similarity=0.250  Sum_probs=31.3

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEccc
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKA   38 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~   38 (426)
                      .|||+||||||+|+.+|+.+++.|.+|+|+|++
T Consensus         1 ~yDViIIGgGpaGl~AAi~aar~G~~v~iie~~   33 (184)
T d1fl2a1           1 AYDVLIVGSGPAGAAAAIYSARKGIRTGLMGER   33 (184)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCeEEEEEEe
Confidence            389999999999999999999999999999975

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=98.54  E-value=2.5e-08  Score=89.70  Aligned_cols=38  Identities=21%  Similarity=0.340  Sum_probs=35.6

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPT   43 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~   43 (426)
                      +.+|+|||||++||++|..|+++|++|+|+|+++.++.
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~iGG   39 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGG   39 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSG
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCCcC
Confidence            46899999999999999999999999999999999864

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.51  E-value=2.1e-08  Score=83.50  Aligned_cols=38  Identities=21%  Similarity=0.152  Sum_probs=34.8

Q ss_pred             CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324            4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP   41 (426)
Q Consensus         4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   41 (426)
                      ..++||+||||||+|+.+|+.|+|.|++|+|+|+....
T Consensus         3 ~~~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~~   40 (192)
T d1vdca1           3 THNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMAN   40 (192)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBT
T ss_pred             cccceEEEECCCHHHHHHHHHHHHcCCcEEEEEeeccc
Confidence            35689999999999999999999999999999987764

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.48  E-value=4.3e-08  Score=83.48  Aligned_cols=35  Identities=23%  Similarity=0.330  Sum_probs=32.9

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ++||+||||||+|+++|..+++.|.+|+|+|+...
T Consensus         3 ~~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~~   37 (223)
T d1ebda1           3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGNL   37 (223)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCT
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEecCCC
Confidence            58999999999999999999999999999999654

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.48  E-value=7.8e-07  Score=74.02  Aligned_cols=111  Identities=18%  Similarity=0.155  Sum_probs=70.1

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcC--CcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccc
Q 014324            7 GKAVIVGGSIAGISCAHALLRAG--WDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQN   84 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G--~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~   84 (426)
                      ++|+|||||++|+.+|..|++.+  .+|+++|+.+.+..   ...++      ...+..       .+.+   .      
T Consensus         1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~~~---~~~~~------~~~l~~-------~~~~---~------   55 (198)
T d1nhpa1           1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISF---LSAGM------QLYLEG-------KVKD---V------   55 (198)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSB---CGGGH------HHHHTT-------SSCC---G------
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCcccc---cccCc------chhhcc-------cccc---h------
Confidence            47999999999999999999874  57999999876531   11111      000000       0000   0      


Q ss_pred             cccccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEE
Q 014324           85 QATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLL  163 (426)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~v  163 (426)
                          .    ....         ..    .+.|.   ..++ ++.+++|.+++  .+...++++  +..+|+.+++.+|.+
T Consensus        56 ----~----~~~~---------~~----~~~l~---~~gi~v~~~~~V~~i~--~~~~~v~~~--~~~~g~~~~~~~D~l  107 (198)
T d1nhpa1          56 ----N----SVRY---------MT----GEKME---SRGVNVFSNTEITAIQ--PKEHQVTVK--DLVSGEERVENYDKL  107 (198)
T ss_dssp             ----G----GSBS---------CC----HHHHH---HTTCEEEETEEEEEEE--TTTTEEEEE--ETTTCCEEEEECSEE
T ss_pred             ----H----HHHH---------hh----HHHHH---HCCcEEEEeeceeeEe--eccccceee--eccccccccccccee
Confidence                0    0000         00    01122   1477 89999999998  445566544  467888888999999


Q ss_pred             EeccCCc
Q 014324          164 VAADGCL  170 (426)
Q Consensus       164 I~AdG~~  170 (426)
                      |.|.|..
T Consensus       108 i~a~G~~  114 (198)
T d1nhpa1         108 IISPGAV  114 (198)
T ss_dssp             EECCCEE
T ss_pred             eEeecce
Confidence            9999965

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.47  E-value=7e-08  Score=82.87  Aligned_cols=38  Identities=26%  Similarity=0.424  Sum_probs=35.4

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP   42 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~   42 (426)
                      ...+|+|||||||||++|..|+++|++|+|+|+.+.++
T Consensus        48 ~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~G   85 (233)
T d1djqa3          48 NKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIG   85 (233)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTT
T ss_pred             CCceEEEEcccHHHHHHHHHHHHhccceeeEeeccccC
Confidence            45799999999999999999999999999999999864

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.46  E-value=5.7e-08  Score=83.26  Aligned_cols=36  Identities=31%  Similarity=0.305  Sum_probs=32.4

Q ss_pred             ccEEEEcCChHHHHHHHHHHHc--CCcEEEEcccCCCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRA--GWDVVVLEKAGGPP   42 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~--G~~v~v~E~~~~~~   42 (426)
                      .+|+|||||||||+||..|+++  |++|+|||+.+.++
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~g   39 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPF   39 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSC
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCC
Confidence            5899999999999999999886  67999999998753

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=6.2e-08  Score=82.43  Aligned_cols=36  Identities=19%  Similarity=0.279  Sum_probs=33.3

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      .+|||+||||||+|+++|..+++.|.+|+|+|+...
T Consensus         2 ~~yDviIIG~GpaG~~aA~~aar~G~kV~vIEk~~~   37 (221)
T d3grsa1           2 ASYDYLVIGGGSGGLASARRAAELGARAAVVESHKL   37 (221)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCT
T ss_pred             CccCEEEECCCHHHHHHHHHHHHCCCEEEEEeccCC
Confidence            469999999999999999999999999999998653

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=98.43  E-value=4.3e-08  Score=81.36  Aligned_cols=36  Identities=25%  Similarity=0.305  Sum_probs=33.3

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ++.||+||||||+||.+|+.|+|.|.+|+|+|+...
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~   39 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEK   39 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSST
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeecc
Confidence            467999999999999999999999999999997654

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.41  E-value=7.8e-08  Score=81.76  Aligned_cols=36  Identities=22%  Similarity=0.286  Sum_probs=33.3

Q ss_pred             CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccC
Q 014324            4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAG   39 (426)
Q Consensus         4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~   39 (426)
                      +.++||+||||||+|+++|..+++.|.+|+|+|+..
T Consensus         3 ~~~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~~   38 (220)
T d1lvla1           3 TIQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQA   38 (220)
T ss_dssp             CEECSEEEECCSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            356999999999999999999999999999999864

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.40  E-value=1.3e-07  Score=81.18  Aligned_cols=33  Identities=30%  Similarity=0.414  Sum_probs=28.8

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcC---CcEEEEcccC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAG---WDVVVLEKAG   39 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G---~~v~v~E~~~   39 (426)
                      ++|+||||||||+++|+.+++.|   .+|+|+|+..
T Consensus         2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~   37 (233)
T d1xdia1           2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG   37 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC
T ss_pred             cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecCC
Confidence            58999999999999999888765   5799999854

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.37  E-value=1e-07  Score=85.60  Aligned_cols=39  Identities=23%  Similarity=0.421  Sum_probs=35.3

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHc--CCcEEEEcccCCCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRA--GWDVVVLEKAGGPPT   43 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~--G~~v~v~E~~~~~~~   43 (426)
                      ..+||+||||||+||++|+.|+++  |++|+|||+.+.++.
T Consensus        49 ~~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~   89 (311)
T d2gjca1          49 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGG   89 (311)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCT
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCCcc
Confidence            357999999999999999999975  999999999998764

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=98.31  E-value=2e-07  Score=85.86  Aligned_cols=38  Identities=29%  Similarity=0.373  Sum_probs=34.8

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP   42 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~   42 (426)
                      .+|||||||+|++|+++|..|++.|++|+|+|+.....
T Consensus         3 ~~yDviIVGsG~aG~v~A~~La~~G~kVlvLEaG~~~~   40 (379)
T d2f5va1           3 IKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDS   40 (379)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCS
T ss_pred             CcccEEEECcCHHHHHHHHHHhhCCCeEEEEecCCCCC
Confidence            56999999999999999999999999999999986543

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.30  E-value=2.3e-07  Score=80.90  Aligned_cols=33  Identities=24%  Similarity=0.433  Sum_probs=31.5

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAG   39 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~   39 (426)
                      |||+||||||+|+++|..+++.|.+|+|+|+..
T Consensus         2 yDviVIG~G~aG~~aA~~aa~~G~~V~liE~~~   34 (259)
T d1onfa1           2 YDLIVIGGGSGGMAAARRAARHNAKVALVEKSR   34 (259)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            899999999999999999999999999999854

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=98.22  E-value=4.3e-07  Score=83.54  Aligned_cols=39  Identities=21%  Similarity=0.363  Sum_probs=35.3

Q ss_pred             CCCCCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccC
Q 014324            1 MEKKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAG   39 (426)
Q Consensus         1 m~~~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~   39 (426)
                      |..-.++||||||+|++|+++|..|+++|++|+|+|+..
T Consensus         2 ~~~~~~~dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~   40 (370)
T d3coxa1           2 LADGDRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGR   40 (370)
T ss_dssp             CCTTCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CCCCCCCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            445577999999999999999999999999999999864

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.21  E-value=5.3e-07  Score=77.22  Aligned_cols=36  Identities=17%  Similarity=0.118  Sum_probs=31.7

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCC-cEEEEcccCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGW-DVVVLEKAGG   40 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~   40 (426)
                      +.|||+||||||||+++|+.+++.|. +|+|+|+...
T Consensus         2 ~~YDviIIG~GpaGl~aA~~aa~~g~k~V~iie~~~~   38 (238)
T d1aoga1           2 KIFDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQMV   38 (238)
T ss_dssp             CSBSEEEECCSHHHHHHHHHHHHTSCCCEEEEESCSS
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEeecc
Confidence            46999999999999999999999886 6888888654

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.21  E-value=3.5e-07  Score=78.69  Aligned_cols=38  Identities=13%  Similarity=0.147  Sum_probs=33.7

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCC-cEEEEcccCCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGW-DVVVLEKAGGPP   42 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~~~   42 (426)
                      ++|||+||||||||+++|+.+++.|. +|.|+|+.....
T Consensus         2 k~YDvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~~~~   40 (240)
T d1feca1           2 RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHG   40 (240)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSB
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEEeccCC
Confidence            57999999999999999999999986 589999887643

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.16  E-value=9.3e-07  Score=77.02  Aligned_cols=39  Identities=18%  Similarity=0.164  Sum_probs=35.9

Q ss_pred             CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324            4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP   42 (426)
Q Consensus         4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~   42 (426)
                      ...|||+||||||+|+.+|..|++.|.+|+|+|+.+..+
T Consensus        40 ~k~yDvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~lG   78 (261)
T d1mo9a1          40 PREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLG   78 (261)
T ss_dssp             CSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSS
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCccc
Confidence            357999999999999999999999999999999988764

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=98.11  E-value=7.7e-06  Score=66.79  Aligned_cols=35  Identities=20%  Similarity=0.376  Sum_probs=30.9

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP   41 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   41 (426)
                      -+|+|||||++|+-+|..|++.|.++.|++..+..
T Consensus         4 a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~~   38 (183)
T d1d7ya1           4 APVVVLGAGLASVSFVAELRQAGYQGLITVVGDEA   38 (183)
T ss_dssp             SSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSC
T ss_pred             CCEEEECccHHHHHHHHHHHhcCCceEEEEEeccc
Confidence            46999999999999999999999998888876654

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=98.03  E-value=1.7e-06  Score=79.05  Aligned_cols=35  Identities=37%  Similarity=0.498  Sum_probs=33.1

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      +||+||||+|++|+.+|..|++.|.+|+|+|+...
T Consensus         2 ~YD~IIVGsG~aG~v~A~rLae~g~~VlvLEaG~~   36 (360)
T d1kdga1           2 PYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGP   36 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred             cCCEEEECcCHHHHHHHHHHhhCCCeEEEEEccCC
Confidence            69999999999999999999999999999999853

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=98.01  E-value=2.2e-06  Score=78.49  Aligned_cols=34  Identities=26%  Similarity=0.242  Sum_probs=32.0

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      .||||||+|++|+++|..|+++|++|+|+|+...
T Consensus         3 v~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~~   36 (367)
T d1n4wa1           3 VPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQL   36 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred             CeEEEeCcCHHHHHHHHHHHHCcCeEEEEecCCC
Confidence            5999999999999999999999999999999754

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.97  E-value=5.5e-07  Score=77.39  Aligned_cols=32  Identities=19%  Similarity=0.277  Sum_probs=28.5

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEccc
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKA   38 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~   38 (426)
                      ++|+|||||++||++|+.|+++|++|+|+|+.
T Consensus         1 mkV~VIGaGi~GlstA~~L~~~G~~v~v~e~~   32 (246)
T d1kifa1           1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDV   32 (246)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEE
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCceEEeee
Confidence            47999999999999999999999987777664

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.95  E-value=1.4e-05  Score=64.10  Aligned_cols=34  Identities=35%  Similarity=0.517  Sum_probs=30.0

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324            8 KAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP   42 (426)
Q Consensus         8 ~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~   42 (426)
                      +|+|||||++|+-+|..|++ +.+|+|+|+.+.+.
T Consensus         2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~~~~   35 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPVPY   35 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSSSSCC
T ss_pred             eEEEECCcHHHHHHHHHHHc-CCCEEEEecccccc
Confidence            79999999999999999975 78999999887653

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=97.90  E-value=3.8e-06  Score=77.59  Aligned_cols=37  Identities=27%  Similarity=0.369  Sum_probs=33.8

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcC-CcEEEEcccCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAG-WDVVVLEKAGGP   41 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G-~~v~v~E~~~~~   41 (426)
                      ++||+||||||++|+++|..|++.| ++|+|+|+....
T Consensus        23 ~tyD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~~~   60 (391)
T d1gpea1          23 KTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYE   60 (391)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCC
T ss_pred             CeeeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCCCC
Confidence            3599999999999999999999998 799999999753

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=97.82  E-value=5.1e-06  Score=76.57  Aligned_cols=36  Identities=25%  Similarity=0.399  Sum_probs=32.7

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcC-CcEEEEcccCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAG-WDVVVLEKAGG   40 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G-~~v~v~E~~~~   40 (426)
                      ++||+||||||++|+++|..|++.+ ++|+|+|+...
T Consensus        16 ~tyD~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~~   52 (385)
T d1cf3a1          16 RTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSY   52 (385)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTCCEEEEESSCC
T ss_pred             CeEEEEEECcCHHHHHHHHHHHHCCCCeEEEECCCCC
Confidence            3589999999999999999999876 89999999864

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=97.71  E-value=5.5e-06  Score=75.28  Aligned_cols=35  Identities=37%  Similarity=0.528  Sum_probs=32.0

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP   41 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   41 (426)
                      .||+||||||+||+++|..|++. ++|+|+|+...+
T Consensus        26 ~YD~IIVGsG~aG~vlA~rLae~-~kVLvLEaG~~~   60 (351)
T d1ju2a1          26 SYDYVIVGGGTSGCPLAATLSEK-YKVLVLERGSLP   60 (351)
T ss_dssp             EEEEEEECCSTTHHHHHHHHTTT-SCEEEECSSBCG
T ss_pred             CccEEEECccHHHHHHHHHhcCC-CCEEEEecCCCC
Confidence            48999999999999999999986 999999999753

>d2voua2 d.16.1.2 (A:164-291) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: PHBH-like
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=97.70  E-value=0.00044  Score=52.15  Aligned_cols=60  Identities=32%  Similarity=0.649  Sum_probs=44.3

Q ss_pred             ccccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEEEecCC------eeeEEEEEecCC
Q 014324          183 LRYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELLNK------RLNWVWYINQPE  250 (426)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~  250 (426)
                      |+|+|+.+|||+++.+....... ..       ....+.++++++.+++.||++++      .+||+|+.+.+.
T Consensus         1 P~yaG~vAwRglv~~~~l~~~~~-~~-------~~~~~~~~~g~~~h~v~YpI~g~~~~~~~~~N~V~~~~~~~   66 (128)
T d2voua2           1 PTYAGYVTWRGVLQPGEVADDVW-NY-------FNDKFTYGLLDDGHLIAYPIPGRENAESPRLNFQWYWNVAE   66 (128)
T ss_dssp             CEEEEEEEEEEEECTTSSCHHHH-HH-------HTTEEEEEEETTEEEEEEEECCSSTTSCCEEEEEEEEECCT
T ss_pred             CcccCeEEEEEEeehHHCCHhHH-hh-------ccCceEEEEcCCceEEEEEecCCCCCCcceEEEEEEEeCCC
Confidence            57899999999999887643211 11       12345688999999999999653      599999987654

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=97.61  E-value=2.2e-05  Score=63.61  Aligned_cols=35  Identities=29%  Similarity=0.409  Sum_probs=31.2

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcC--CcEEEEcccCCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAG--WDVVVLEKAGGP   41 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G--~~v~v~E~~~~~   41 (426)
                      .+|+|||||++|+.+|..|++.|  .+|+|+|+.+..
T Consensus         3 krivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~~   39 (186)
T d1fcda1           3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDY   39 (186)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCE
T ss_pred             CcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCcc
Confidence            48999999999999999999987  589999988753

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.60  E-value=3.8e-05  Score=54.79  Aligned_cols=38  Identities=29%  Similarity=0.546  Sum_probs=34.3

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP   42 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~   42 (426)
                      ...+|+|+|.|.+|+++|..|.++|.+|+++|.+..+.
T Consensus         4 ~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~~   41 (93)
T d2jfga1           4 QGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPP   41 (93)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSCT
T ss_pred             CCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCch
Confidence            34689999999999999999999999999999987754

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=97.45  E-value=4.5e-05  Score=61.92  Aligned_cols=37  Identities=27%  Similarity=0.474  Sum_probs=33.3

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP   42 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~   42 (426)
                      .-+|+|||||++|+-+|..|++.|.+|+|++..+.+.
T Consensus         3 ~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~~   39 (185)
T d1q1ra1           3 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATV   39 (185)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCS
T ss_pred             CCCEEEECCcHHHHHHHHHHHHcCCceEEEEecCccc
Confidence            3589999999999999999999999999998887753

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=97.38  E-value=7.2e-05  Score=60.72  Aligned_cols=34  Identities=18%  Similarity=0.151  Sum_probs=31.6

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      .+|+|||+|..|+++|..|+++|++|.++++.+.
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~   35 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQ   35 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            5799999999999999999999999999998654

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.38  E-value=0.0003  Score=55.60  Aligned_cols=26  Identities=27%  Similarity=0.304  Sum_probs=23.7

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcE
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDV   32 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v   32 (426)
                      .+|+|||||..|+-+|..+.+.|.++
T Consensus        30 krVvVIGgG~~g~d~a~~~~r~G~~~   55 (162)
T d1ps9a2          30 NKVAIIGCGGIGFDTAMYLSQPGEST   55 (162)
T ss_dssp             SEEEEECCHHHHHHHHHHHTCCSSCG
T ss_pred             CceEEEcCchhHHHHHHHHHHcCCcc
Confidence            58999999999999999999999654

>d3c96a2 d.16.1.2 (A:183-293) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: PHBH-like
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.31  E-value=0.00084  Score=49.08  Aligned_cols=98  Identities=14%  Similarity=0.187  Sum_probs=63.8

Q ss_pred             cccceEEEEEEeeCCCCCchHHHhhhhcccCCCCceeeEecCCCceEEEEEecCC-------eeeEEEEEecCC--CCcC
Q 014324          184 RYSGYCAWRGVLDFSGIEDSEIIKGMRRVYPDLGKCLYFDLASGTHSVFYELLNK-------RLNWVWYINQPE--PIMK  254 (426)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~--~~~~  254 (426)
                      +|.|+.+|||+++.++.             +.....+..+.+++.+++.||+.++       .+|++..+..+.  ....
T Consensus         1 ~~~G~~aWRg~v~~~~~-------------~~g~s~v~~~~g~~~~~V~YPi~~~~~~~G~~liN~Va~v~~~~~~~~~~   67 (111)
T d3c96a2           1 SHGGITMWRGVTEFDRF-------------LDGKTMIVANDEHWSRLVAYPISARHAAEGKSLVNWVCMVPSAAVGQLDN   67 (111)
T ss_dssp             EEEEEEEEEEEEEESCC-------------TTSSEEEEEECTTCCEEEEEECCHHHHTTTCEEEEEEEEEEHHHHCCCCS
T ss_pred             CccCEEEEeeeEEcCCC-------------CCCCCEEEEecCCCceEEEEecCCCCCCCcceeEEEEEEEecccccCCCC
Confidence            36899999999987643             2223345566678899999999654       378887765422  1112


Q ss_pred             CCcceeccCHHHHHHHHHHHhhcccHH---HHHHhhhcCcceEeeee
Q 014324          255 GNSVTMRVSNDMIKNMHEEAEKVWLPE---FVKVIKETKEPFINAMY  298 (426)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~  298 (426)
                      ...+....+.+.+.   + .++.|.+.   +.++++.++..+.|++.
T Consensus        68 ~e~W~~~g~~~el~---~-~F~~W~~~~~di~~LI~~~~~i~~wpl~  110 (111)
T d3c96a2          68 EADWNRDGRLEDVL---P-FFADWDLGWFDIRDLLTRNQLILQYPMV  110 (111)
T ss_dssp             SCCTTCBCCHHHHH---H-HHTTCCBTTBCHHHHHHTCSEEEEEEEE
T ss_pred             CCCcccccCHHHHH---H-HHcCCCCchhhHHHHHHhCcceeeccCC
Confidence            33344444444333   2 35678874   88899998888888764

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=97.26  E-value=0.0034  Score=46.93  Aligned_cols=95  Identities=15%  Similarity=0.094  Sum_probs=67.5

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeecccc
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQNQ   85 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   85 (426)
                      ..+|+|||+|-+.+-.|+.|++..-+|+++-|++....       .   +                              
T Consensus        30 gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~~~~-------~---~------------------------------   69 (126)
T d1fl2a2          30 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA-------D---Q------------------------------   69 (126)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCCS-------C---H------------------------------
T ss_pred             CceEEEEeCCHHHHHHHHhhhccCCceEEEeccccccc-------c---c------------------------------
Confidence            46899999999999999999999889999988876421       0   0                              


Q ss_pred             ccccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEE
Q 014324           86 ATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLV  164 (426)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI  164 (426)
                                              ...++ +.+  .+++ +++++++.++.-++ ...-.+++++..+|+..++.+|-|+
T Consensus        70 ------------------------~~~~~-~~~--~~~I~v~~~~~v~~i~G~~-~~v~~v~l~~~~tge~~~l~vdgvF  121 (126)
T d1fl2a2          70 ------------------------VLQDK-LRS--LKNVDIILNAQTTEVKGDG-SKVVGLEYRDRVSGDIHNIELAGIF  121 (126)
T ss_dssp             ------------------------HHHHH-HHT--CTTEEEESSEEEEEEEESS-SSEEEEEEEETTTCCEEEEECSEEE
T ss_pred             ------------------------ccccc-ccc--ccceeEEcCcceEEEEccc-cceeeEEEEECCCCCEEEEECCEEE
Confidence                                    00011 111  1356 88999999998422 2223366667778988889999888


Q ss_pred             eccC
Q 014324          165 AADG  168 (426)
Q Consensus       165 ~AdG  168 (426)
                      .+=|
T Consensus       122 v~IG  125 (126)
T d1fl2a2         122 VQIG  125 (126)
T ss_dssp             ECSC
T ss_pred             EEeC
Confidence            7755

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.24  E-value=0.00044  Score=54.26  Aligned_cols=35  Identities=23%  Similarity=0.238  Sum_probs=30.8

Q ss_pred             ccEEEE--cCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324            7 GKAVIV--GGSIAGISCAHALLRAGWDVVVLEKAGGP   41 (426)
Q Consensus         7 ~~V~Iv--GaG~aGl~~A~~L~~~G~~v~v~E~~~~~   41 (426)
                      ..|+|+  |||..|+.+|..|+++|.+|+|+|+.+.+
T Consensus        40 ~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~   76 (156)
T d1djqa2          40 KRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLA   76 (156)
T ss_dssp             SEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTT
T ss_pred             CceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCcc
Confidence            356665  99999999999999999999999998764

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.19  E-value=0.00013  Score=55.67  Aligned_cols=34  Identities=24%  Similarity=0.333  Sum_probs=31.9

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ++|+|+|+|..|..+|..|.++|++|+|+|++++
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~   34 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKD   34 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCcceecCChh
Confidence            4799999999999999999999999999999875

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=97.16  E-value=0.00019  Score=56.99  Aligned_cols=34  Identities=21%  Similarity=0.179  Sum_probs=32.2

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ++|+|||+|-.|..+|..|++.|++|++++|...
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~   34 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHH
Confidence            4799999999999999999999999999999876

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.09  E-value=0.00017  Score=58.09  Aligned_cols=35  Identities=14%  Similarity=0.183  Sum_probs=32.6

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ..+|+|||||-.|..+|..|.++|++|+|+||...
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~   36 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLE   36 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECChH
Confidence            35799999999999999999999999999999876

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.00  E-value=0.0088  Score=44.76  Aligned_cols=95  Identities=16%  Similarity=0.192  Sum_probs=67.1

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCCCCCCCcceeccChhHHHHHHHHhcCCchhhhccCcceeeccc
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPPTGSPTGAGLGLDRPAQRIIQSWLNGRPHLLHLATVPLTIDQN   84 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~   84 (426)
                      +..+|+|||+|-+.+-.|+.|++.--+|+++-|++.++.       .   +                             
T Consensus        33 rgk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~ra-------~---~-----------------------------   73 (130)
T d1vdca2          33 RNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRA-------S---K-----------------------------   73 (130)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCS-------C---H-----------------------------
T ss_pred             CCCEEEEEcCchHHHHHHHHHhCCCCcEEEEEecccccc-------c---h-----------------------------
Confidence            356899999999999999999999889999988877531       0   0                             


Q ss_pred             cccccccccccccccCCCcchhccHHHHHHHHHhcCCCCe-eEeeeeEEEEEEecCCceE-EEEEEeccCCceEEEeecE
Q 014324           85 QATDNAKVTRTLARDDNFNFRAAHWADLHGLLYNALPPEI-FLRGHQYLSFCISEVKTTV-TVKAKVLQTDEVIEIKGNL  162 (426)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-i~~~~~v~~~~~~~~~~~v-~v~~~~~~~g~~~~~~~d~  162 (426)
                                               ...++ +.+  ...+ +++++++..+.-+.....+ .+++++..+|+..++.+|-
T Consensus        74 -------------------------~~~~~-l~~--~~nI~v~~~~~v~~i~Gd~~~~~v~~v~l~~~~tge~~~l~~dG  125 (130)
T d1vdca2          74 -------------------------IMQQR-ALS--NPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSG  125 (130)
T ss_dssp             -------------------------HHHHH-HHT--CTTEEEECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECSE
T ss_pred             -------------------------hhhhc-ccc--CCceEEEeccEEEEEEccCCcccEEEEEEEECCCCCEEEEECCE
Confidence                                     00111 111  1356 8899999999854333334 3666777888888888887


Q ss_pred             EEec
Q 014324          163 LVAA  166 (426)
Q Consensus       163 vI~A  166 (426)
                      |..|
T Consensus       126 vFVa  129 (130)
T d1vdca2         126 LFFA  129 (130)
T ss_dssp             EEEC
T ss_pred             EEEE
Confidence            7654

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=96.85  E-value=0.0077  Score=44.90  Aligned_cols=36  Identities=19%  Similarity=0.303  Sum_probs=32.7

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP   41 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   41 (426)
                      ..+|+|||+|-+.+-.|..|++..-+|+++-|++.+
T Consensus        27 ~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~   62 (126)
T d1trba2          27 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGF   62 (126)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHhhcCCcEEEEeecccc
Confidence            468999999999999999999999999999887764

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.77  E-value=0.00049  Score=56.58  Aligned_cols=34  Identities=24%  Similarity=0.363  Sum_probs=31.3

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ++|.|||.|-.|+.+|..|+++|++|+.+|.++.
T Consensus         1 MkI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~   34 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSST   34 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CEEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHH
Confidence            4699999999999999999999999999998654

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=96.72  E-value=0.0004  Score=56.42  Aligned_cols=38  Identities=24%  Similarity=0.230  Sum_probs=32.6

Q ss_pred             CCCCCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            1 MEKKEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         1 m~~~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ||.|  .+|+|||||--|.++|..|++.|.+|.++.++++
T Consensus         4 ~~~m--~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~~   41 (189)
T d1n1ea2           4 LLYL--NKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEE   41 (189)
T ss_dssp             CCCE--EEEEEECCSHHHHHHHHHHHTTEEEEEEECSCHH
T ss_pred             ccee--ceEEEECCCHHHHHHHHHHHHcCCeEEEEEecHH
Confidence            4444  3799999999999999999999999999987643

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.71  E-value=0.00093  Score=51.73  Aligned_cols=40  Identities=23%  Similarity=0.532  Sum_probs=35.4

Q ss_pred             CCCCCCccEEEEcCChHHHHHHHHHHHcCC--cEEEEcccCC
Q 014324            1 MEKKEKGKAVIVGGSIAGISCAHALLRAGW--DVVVLEKAGG   40 (426)
Q Consensus         1 m~~~~~~~V~IvGaG~aGl~~A~~L~~~G~--~v~v~E~~~~   40 (426)
                      |.++...+|.|||+|-.|.++|+.|+.+|+  +++++|..+.
T Consensus         1 m~~~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~   42 (148)
T d1ldna1           1 MKNNGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANES   42 (148)
T ss_dssp             CTTTTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHH
T ss_pred             CCCCCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccc
Confidence            777788899999999999999999999986  7999997654

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=96.69  E-value=0.00059  Score=51.96  Aligned_cols=33  Identities=21%  Similarity=0.281  Sum_probs=31.1

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            8 KAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         8 ~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      +++|||+|-.|..+|..|.++|++|+++|+++.
T Consensus         2 ~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~   34 (134)
T d2hmva1           2 QFAVIGLGRFGGSIVKELHRMGHEVLAVDINEE   34 (134)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEESCHH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEecCcHH
Confidence            689999999999999999999999999998865

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=96.65  E-value=0.00099  Score=52.03  Aligned_cols=36  Identities=28%  Similarity=0.473  Sum_probs=33.0

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      +.-+|+|+|+|.+|+.++..+.+.|.+|.+||.+..
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~   66 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVE   66 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHH
Confidence            467999999999999999999999999999998654

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=96.63  E-value=0.0011  Score=52.49  Aligned_cols=36  Identities=17%  Similarity=0.289  Sum_probs=33.4

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      +.-+|+|+|||.+|+.+|....+.|..|.++|.+..
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~   63 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAA   63 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHH
Confidence            456999999999999999999999999999998876

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=96.62  E-value=0.00091  Score=52.90  Aligned_cols=34  Identities=26%  Similarity=0.279  Sum_probs=30.9

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ++|.|||.|..|.++|..|+++|++|+++|+++.
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~   34 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQS   34 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCch
Confidence            4699999999999999999999999999988653

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=96.58  E-value=0.0013  Score=51.21  Aligned_cols=36  Identities=19%  Similarity=0.305  Sum_probs=32.3

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCC-cEEEEcccCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGW-DVVVLEKAGG   40 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~   40 (426)
                      ++.+|.|||+|-.|.++|+.|+..++ +++++|..+.
T Consensus         6 k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~   42 (154)
T d1pzga1           6 RRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKG   42 (154)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccc
Confidence            56899999999999999999999986 7999997765

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=96.56  E-value=0.00084  Score=54.27  Aligned_cols=34  Identities=18%  Similarity=0.208  Sum_probs=31.5

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      .+|+|||||..|...|..++++|++|+++|+.++
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~   38 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINEH   38 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            4699999999999999999999999999998765

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.56  E-value=0.0012  Score=53.54  Aligned_cols=34  Identities=21%  Similarity=0.474  Sum_probs=32.1

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      .+|+|||||..|...|..++++|++|+++|+.+.
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~   38 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTED   38 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCCcEEEEECChH
Confidence            4899999999999999999999999999998876

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.42  E-value=0.0015  Score=47.99  Aligned_cols=37  Identities=27%  Similarity=0.173  Sum_probs=32.6

Q ss_pred             CCCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            4 KEKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ....+|+|||+|.+|..-|..|.+.|.+|+|+.....
T Consensus        10 l~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~   46 (113)
T d1pjqa1          10 LRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFI   46 (113)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCC
T ss_pred             eCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence            4567999999999999999999999999999975443

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=96.39  E-value=0.002  Score=50.10  Aligned_cols=36  Identities=28%  Similarity=0.326  Sum_probs=32.3

Q ss_pred             CCccEEEEc-CChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            5 EKGKAVIVG-GSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         5 ~~~~V~IvG-aG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      .-.+|+||| .|..|..+|..|.++|++|.++|+...
T Consensus         8 ~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~   44 (152)
T d2pv7a2           8 DIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDW   44 (152)
T ss_dssp             TCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccc
Confidence            335899999 699999999999999999999998764

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.34  E-value=0.021  Score=47.24  Aligned_cols=36  Identities=25%  Similarity=0.302  Sum_probs=30.1

Q ss_pred             CccEEEEcCChHHHHHHHHHHHc--------------------CC-cEEEEcccCCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRA--------------------GW-DVVVLEKAGGP   41 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~--------------------G~-~v~v~E~~~~~   41 (426)
                      ..+|+|||+|=+++=+|..|.+.                    |. +|.++.|+...
T Consensus        39 gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg~~   95 (225)
T d1cjca1          39 CDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPL   95 (225)
T ss_dssp             SSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGG
T ss_pred             CceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcChH
Confidence            36899999999999999999883                    64 68888888763

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.27  E-value=0.0015  Score=52.41  Aligned_cols=33  Identities=18%  Similarity=0.183  Sum_probs=30.0

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAG   39 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~   39 (426)
                      ++|.|||+|.-|.++|..|+++|.+|.++.|..
T Consensus         1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~r~~   33 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEF   33 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGG
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEEecc
Confidence            479999999999999999999999999996643

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=96.19  E-value=0.0026  Score=48.87  Aligned_cols=36  Identities=28%  Similarity=0.463  Sum_probs=31.8

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCC--cEEEEcccCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGW--DVVVLEKAGG   40 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~--~v~v~E~~~~   40 (426)
                      ++.+|.|||+|-.|.++|+.|+.+|+  +++++|+...
T Consensus         4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~   41 (146)
T d1ez4a1           4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKD   41 (146)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccc
Confidence            45799999999999999999999985  7999997654

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.13  E-value=0.0018  Score=50.16  Aligned_cols=35  Identities=14%  Similarity=0.373  Sum_probs=31.5

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAG   39 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~   39 (426)
                      +..+|+|||||..|+.-|..|.+.|.+|+|+....
T Consensus        12 ~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~~   46 (150)
T d1kyqa1          12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL   46 (150)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            56789999999999999999999999999996543

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.82  E-value=0.0053  Score=47.73  Aligned_cols=37  Identities=22%  Similarity=0.452  Sum_probs=32.4

Q ss_pred             CCCccEEEEcCChHHHHHHHHHHHcCC--cEEEEcccCC
Q 014324            4 KEKGKAVIVGGSIAGISCAHALLRAGW--DVVVLEKAGG   40 (426)
Q Consensus         4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~--~v~v~E~~~~   40 (426)
                      +.+.+|.|||+|-.|.++|+.|..+|+  +++++|....
T Consensus        17 ~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~   55 (159)
T d2ldxa1          17 LSRCKITVVGVGDVGMACAISILLKGLADELALVDADTD   55 (159)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHH
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCch
Confidence            456789999999999999999999986  7999987654

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.68  E-value=0.0035  Score=49.11  Aligned_cols=34  Identities=29%  Similarity=0.446  Sum_probs=31.3

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ++|.|||-|..|..+|..|.++|++|.++|+.+.
T Consensus         1 MkIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~   34 (161)
T d1vpda2           1 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPE   34 (161)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CEEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcc
Confidence            3699999999999999999999999999998765

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.68  E-value=0.0064  Score=47.06  Aligned_cols=35  Identities=26%  Similarity=0.488  Sum_probs=30.7

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCc-EEEEcccCCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWD-VVVLEKAGGP   41 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~-v~v~E~~~~~   41 (426)
                      .+|+|||||-+|+=+|..|.+.|.+ |+++.|++..
T Consensus        46 ~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~~~   81 (153)
T d1gtea3          46 GAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFV   81 (153)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGG
T ss_pred             CEEEEECCChhHHHHHHHHHHcCCcceeEEEeCChh
Confidence            4799999999999999999999865 8899887753

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.67  E-value=0.0035  Score=50.68  Aligned_cols=34  Identities=21%  Similarity=0.250  Sum_probs=30.6

Q ss_pred             ccEEEE-cCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            7 GKAVIV-GGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~Iv-GaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ++|+|| |+|--|.++|..|+++|++|+|..|+++
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e   35 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREE   35 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHH
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            469999 6799999999999999999999988764

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.66  E-value=0.012  Score=42.57  Aligned_cols=38  Identities=18%  Similarity=0.379  Sum_probs=34.6

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP   42 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~   42 (426)
                      ..++|.|+|||=-|.++|.+..+.|++|.++|..+..+
T Consensus        10 ~~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~~P   47 (111)
T d1kjqa2          10 AATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADAP   47 (111)
T ss_dssp             TCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTCG
T ss_pred             CCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCCCc
Confidence            34689999999999999999999999999999988754

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=95.64  E-value=0.006  Score=46.55  Aligned_cols=34  Identities=32%  Similarity=0.495  Sum_probs=30.4

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCC-cEEEEcccCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGW-DVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~   40 (426)
                      .+|.|||+|-.|.++|+.|+.+++ +++++|....
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~   36 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEG   36 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccc
Confidence            489999999999999999999886 8999997665

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=95.61  E-value=0.0079  Score=46.75  Aligned_cols=36  Identities=19%  Similarity=0.435  Sum_probs=32.4

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCC--cEEEEcccCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGW--DVVVLEKAGG   40 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~--~v~v~E~~~~   40 (426)
                      .+.+|.|||+|-.|.++|+.|..+|+  +++++|....
T Consensus        19 ~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~   56 (160)
T d1i0za1          19 PNNKITVVGVGQVGMACAISILGKSLADELALVDVLED   56 (160)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccc
Confidence            45799999999999999999999997  7999998754

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.61  E-value=0.0054  Score=48.40  Aligned_cols=35  Identities=20%  Similarity=0.102  Sum_probs=30.8

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      .-.|+|+|+|+.|+.++..++..|.+|+++++++.
T Consensus        28 g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~   62 (168)
T d1piwa2          28 GKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSR   62 (168)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSST
T ss_pred             CCEEEEECCCCcchhHHHHhhhccccccccccchh
Confidence            34799999999999999888888999999988765

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=95.60  E-value=0.0056  Score=48.33  Aligned_cols=34  Identities=18%  Similarity=0.192  Sum_probs=30.3

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      -.|+|+|+|+.|+.++..++..|.+|+++|+++.
T Consensus        28 ~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~   61 (170)
T d1e3ja2          28 TTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPR   61 (170)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CEEEEEcccccchhhHhhHhhhcccccccchHHH
Confidence            4699999999999999999999999999987654

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.53  E-value=0.0049  Score=48.47  Aligned_cols=34  Identities=15%  Similarity=0.075  Sum_probs=29.9

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      -.|+|+|+|+.|++++..++..|.+|+++++.+.
T Consensus        29 ~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~   62 (166)
T d1llua2          29 QWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDA   62 (166)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CEEEEeeccccHHHHHHHHHHcCCccceecchhh
Confidence            4699999999999999999999999999876653

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=95.53  E-value=0.0071  Score=48.13  Aligned_cols=34  Identities=21%  Similarity=0.320  Sum_probs=31.3

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ++|.|||-|..|..+|..|.++|++|.++++.+.
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~~   35 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYS   35 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred             CEEEEEeehHHHHHHHHHHHHCCCeEEEEECCHH
Confidence            5799999999999999999999999999987654

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.50  E-value=0.0044  Score=50.27  Aligned_cols=33  Identities=18%  Similarity=0.221  Sum_probs=29.3

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ++|+|||.|-.||.+|..|+ +|++|+.+|-++.
T Consensus         1 MkI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~~   33 (196)
T d1dlja2           1 MKIAVAGSGYVGLSLGVLLS-LQNEVTIVDILPS   33 (196)
T ss_dssp             CEEEEECCSHHHHHHHHHHT-TTSEEEEECSCHH
T ss_pred             CEEEEECCChhHHHHHHHHH-CCCcEEEEECCHH
Confidence            46999999999999999887 5999999997764

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=95.47  E-value=0.008  Score=45.85  Aligned_cols=34  Identities=24%  Similarity=0.394  Sum_probs=30.6

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCC--cEEEEcccCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGW--DVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~--~v~v~E~~~~   40 (426)
                      ++|.|||||-.|.++|+.|+..|+  +++++|..+.
T Consensus         1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~   36 (142)
T d1guza1           1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEG   36 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccc
Confidence            479999999999999999999985  8999998775

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.44  E-value=0.0068  Score=47.89  Aligned_cols=34  Identities=21%  Similarity=0.245  Sum_probs=29.5

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCC-cEEEEcccCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGW-DVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~   40 (426)
                      -.|+|+|+|+.|+.++..++..|. +|+++|+.+.
T Consensus        28 d~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~   62 (171)
T d1pl8a2          28 HKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSAT   62 (171)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHH
T ss_pred             CEEEEECCCccHHHHHHHHHHcCCceEEeccCCHH
Confidence            469999999999999999999998 6888886654

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=95.38  E-value=0.0091  Score=47.41  Aligned_cols=34  Identities=12%  Similarity=0.255  Sum_probs=31.9

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      -+|.|||-|..|..+|..|.++|++|.+++|.+.
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~   36 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVS   36 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTH
T ss_pred             CcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            4799999999999999999999999999998875

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=95.38  E-value=0.0099  Score=45.68  Aligned_cols=35  Identities=29%  Similarity=0.445  Sum_probs=30.9

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCC-cEEEEcccCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGW-DVVVLEKAGG   40 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~   40 (426)
                      +.+|.|||+|-.|.++|+.|.++++ +++++|....
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~   38 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKN   38 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCC
Confidence            4689999999999999999999886 7899998665

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.33  E-value=0.0069  Score=46.31  Aligned_cols=34  Identities=24%  Similarity=0.390  Sum_probs=30.0

Q ss_pred             ccEEEEcC-ChHHHHHHHHHHHcCC--cEEEEcccCC
Q 014324            7 GKAVIVGG-SIAGISCAHALLRAGW--DVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGa-G~aGl~~A~~L~~~G~--~v~v~E~~~~   40 (426)
                      ++|.|||| |-.|.++|+.|+.+|+  +++++|....
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~   37 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHS   37 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGG
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccccchhh
Confidence            47999996 9999999999999995  8999998754

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=95.31  E-value=0.01  Score=45.25  Aligned_cols=35  Identities=20%  Similarity=0.324  Sum_probs=29.7

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCC--cEEEEcccCCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGW--DVVVLEKAGGP   41 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~--~v~v~E~~~~~   41 (426)
                      .+|.|||+|-.|.++|+.|..+++  +++++|.....
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~   38 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEK   38 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCc
Confidence            489999999999999999999986  79999988763

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=95.11  E-value=0.012  Score=44.78  Aligned_cols=34  Identities=24%  Similarity=0.355  Sum_probs=30.1

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCC--cEEEEcccCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGW--DVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~--~v~v~E~~~~   40 (426)
                      .+|.|||+|-.|.++|+.|..+|+  +++++|....
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~   37 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKE   37 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccc
Confidence            579999999999999999999987  7999886654

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.05  E-value=0.015  Score=53.50  Aligned_cols=38  Identities=16%  Similarity=0.156  Sum_probs=35.9

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP   42 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~   42 (426)
                      ..+||||+|.|+.=..+|.+|++.|.+|+-+|+++..+
T Consensus         5 ~e~DVII~GTGL~ESILAaAlSr~GkkVLHiD~N~yYG   42 (491)
T d1vg0a1           5 SDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYG   42 (491)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             CccCEEEECCChHHHHHHHHHHhcCCEEEEecCCCcCC
Confidence            56999999999999999999999999999999999865

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=94.99  E-value=0.011  Score=45.60  Aligned_cols=34  Identities=18%  Similarity=0.093  Sum_probs=31.1

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ++|.|||.|-.|..+|..|.++|++|+++++.+.
T Consensus         1 MkIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~   34 (152)
T d1i36a2           1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRS   34 (152)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCC
T ss_pred             CEEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchh
Confidence            4799999999999999999999999999987665

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=94.93  E-value=0.0087  Score=47.80  Aligned_cols=34  Identities=21%  Similarity=0.222  Sum_probs=29.4

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCC-cEEEEcccCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGW-DVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~   40 (426)
                      -.|+|+|+|+.|+.++..++..|. +|+++|+++.
T Consensus        30 ~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~   64 (182)
T d1vj0a2          30 KTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPN   64 (182)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHH
T ss_pred             CEEEEECCCccchhheecccccccccccccccccc
Confidence            479999999999999999999997 6888887554

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.92  E-value=0.011  Score=46.21  Aligned_cols=33  Identities=24%  Similarity=0.371  Sum_probs=30.9

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            8 KAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         8 ~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      +|.|||-|-.|..+|..|.++|++|.++|+...
T Consensus         3 kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~~   35 (162)
T d3cuma2           3 QIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQS   35 (162)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSSHH
T ss_pred             EEEEEEEHHHHHHHHHHHHHCCCeEEEEECchh
Confidence            599999999999999999999999999998754

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.89  E-value=0.013  Score=44.64  Aligned_cols=34  Identities=21%  Similarity=0.162  Sum_probs=29.9

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCC--cEEEEcccCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGW--DVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~--~v~v~E~~~~   40 (426)
                      ++|.|||+|-.|.++|+.|+.+|.  +++++|..+.
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~   36 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAED   36 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecccc
Confidence            479999999999999999999885  6999997654

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=94.88  E-value=0.011  Score=46.44  Aligned_cols=34  Identities=21%  Similarity=0.105  Sum_probs=30.0

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      -.|+|+|+|+.|+.++..++..|.++++++..+.
T Consensus        32 ~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~   65 (168)
T d1uufa2          32 KKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEA   65 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CEEEEeccchHHHHHHHHhhcccccchhhccchh
Confidence            4699999999999999988889999988887654

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=94.87  E-value=0.012  Score=42.30  Aligned_cols=35  Identities=17%  Similarity=0.238  Sum_probs=30.0

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ..+|+|||+|.+|.-.|..|++.+.++++.-+++.
T Consensus        32 gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~~   66 (107)
T d2gv8a2          32 GESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGG   66 (107)
T ss_dssp             TCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTC
T ss_pred             CCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecCc
Confidence            46899999999999999999998888777766554

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=94.69  E-value=0.015  Score=44.37  Aligned_cols=34  Identities=29%  Similarity=0.418  Sum_probs=29.5

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCC--cEEEEcccCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGW--DVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~--~v~v~E~~~~   40 (426)
                      .+|.|||+|-.|.++|+.|..+|+  +++++|....
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~   37 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEA   37 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHH
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccc
Confidence            479999999999999999999885  7888887554

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=94.65  E-value=0.018  Score=44.33  Aligned_cols=33  Identities=24%  Similarity=0.322  Sum_probs=30.8

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            8 KAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         8 ~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      .|+|+|.|..|..++..|.++|.+|+|+|..++
T Consensus         5 HiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~   37 (153)
T d1id1a_           5 HFIVCGHSILAINTILQLNQRGQNVTVISNLPE   37 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEECCCH
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEeccch
Confidence            599999999999999999999999999998764

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.65  E-value=0.14  Score=41.65  Aligned_cols=35  Identities=29%  Similarity=0.542  Sum_probs=29.0

Q ss_pred             CccEEEEcCChHHHHHHHHHH--------------------HcCC-cEEEEcccCC
Q 014324            6 KGKAVIVGGSIAGISCAHALL--------------------RAGW-DVVVLEKAGG   40 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~--------------------~~G~-~v~v~E~~~~   40 (426)
                      ..+|+|||+|=+++=+|..|.                    +.|. +|.++-|+..
T Consensus        39 gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg~   94 (216)
T d1lqta1          39 GARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGP   94 (216)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCG
T ss_pred             CceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECCh
Confidence            358999999999999998877                    5676 5888888776

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.64  E-value=0.016  Score=43.94  Aligned_cols=34  Identities=35%  Similarity=0.407  Sum_probs=29.2

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCC--cEEEEcccCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGW--DVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~--~v~v~E~~~~   40 (426)
                      ++|.|||+|-.|.++|+.|+.+++  +++++|....
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~   36 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKK   36 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccc
Confidence            479999999999999999998885  7888886653

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=94.52  E-value=0.017  Score=45.63  Aligned_cols=35  Identities=11%  Similarity=0.095  Sum_probs=29.2

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCC-cEEEEcccCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGW-DVVVLEKAGG   40 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~   40 (426)
                      .-.|+|+|+|+.|++++..++..|. +|+++|+++.
T Consensus        28 g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~   63 (174)
T d1jqba2          28 GSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPI   63 (174)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHH
T ss_pred             CCEEEEEcCCcchhhhhhhhhcccccccccccchhh
Confidence            3479999999999999999998997 6888876543

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=94.48  E-value=0.03  Score=40.56  Aligned_cols=37  Identities=16%  Similarity=0.409  Sum_probs=32.8

Q ss_pred             CCccEEEEcCCh-----------HHHHHHHHHHHcCCcEEEEcccCCC
Q 014324            5 EKGKAVIVGGSI-----------AGISCAHALLRAGWDVVVLEKAGGP   41 (426)
Q Consensus         5 ~~~~V~IvGaG~-----------aGl~~A~~L~~~G~~v~v~E~~~~~   41 (426)
                      ...+|+|+|+||           ++..++.+|++.|++++++--++.-
T Consensus         3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeT   50 (121)
T d1a9xa4           3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPET   50 (121)
T ss_dssp             SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTS
T ss_pred             CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhh
Confidence            456899999998           7888999999999999999988864

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.31  E-value=0.017  Score=44.00  Aligned_cols=31  Identities=16%  Similarity=0.210  Sum_probs=27.7

Q ss_pred             cEEEEcC-ChHHHHHHHHHHHcCC--cEEEEccc
Q 014324            8 KAVIVGG-SIAGISCAHALLRAGW--DVVVLEKA   38 (426)
Q Consensus         8 ~V~IvGa-G~aGl~~A~~L~~~G~--~v~v~E~~   38 (426)
                      +|.|||| |-.|.++|+.|+.+|+  +++++|..
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~   35 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIA   35 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESS
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEecc
Confidence            6999996 9999999999999986  68888864

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=94.15  E-value=0.021  Score=45.12  Aligned_cols=34  Identities=18%  Similarity=0.302  Sum_probs=28.7

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCc-EEEEcccCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWD-VVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~-v~v~E~~~~   40 (426)
                      -.|+|+|+|+.|++++..++..|.+ |++.|..+.
T Consensus        30 ~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~   64 (174)
T d1e3ia2          30 STCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGE   64 (174)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             CEEEEECCChHHHHHHHHHHHhCCceeeeeccchH
Confidence            4699999999999999999999985 666676654

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.14  E-value=0.024  Score=44.49  Aligned_cols=33  Identities=27%  Similarity=0.371  Sum_probs=27.8

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCC--cEEEEcccCC
Q 014324            8 KAVIVGGSIAGISCAHALLRAGW--DVVVLEKAGG   40 (426)
Q Consensus         8 ~V~IvGaG~aGl~~A~~L~~~G~--~v~v~E~~~~   40 (426)
                      +|.|||.|.-|.++|..|.++|+  +|..+|++..
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~   37 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPE   37 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHH
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChH
Confidence            59999999999999999999996  5666676543

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=94.13  E-value=0.021  Score=45.22  Aligned_cols=33  Identities=18%  Similarity=0.221  Sum_probs=29.6

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCC-cEEEEcccCC
Q 014324            8 KAVIVGGSIAGISCAHALLRAGW-DVVVLEKAGG   40 (426)
Q Consensus         8 ~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~   40 (426)
                      -|+|+|+|+.|+.+...++..|. +|+++|..++
T Consensus        32 tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~   65 (176)
T d1d1ta2          32 TCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKD   65 (176)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             EEEEECCCchhHHHHHHHHHcCCceEEEecCcHH
Confidence            49999999999999999999995 7989888775

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.13  E-value=0.02  Score=44.75  Aligned_cols=35  Identities=17%  Similarity=0.099  Sum_probs=29.6

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      .-.|+|+|+|+.|++++..++..|.+|++++.++.
T Consensus        28 g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~   62 (168)
T d1rjwa2          28 GEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDE   62 (168)
T ss_dssp             TCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CCEEEEeecccchhhhhHHHhcCCCeEeccCCCHH
Confidence            34799999999999999999999999988776543

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=93.99  E-value=0.026  Score=45.47  Aligned_cols=33  Identities=18%  Similarity=0.193  Sum_probs=27.4

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCC-cEEEEcccC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGW-DVVVLEKAG   39 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~   39 (426)
                      -.|+|+|+|+.|+.++..++..|. +|+++|..+
T Consensus        27 ~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~   60 (195)
T d1kola2          27 STVYVAGAGPVGLAAAASARLLGAAVVIVGDLNP   60 (195)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             CEEEEECcCHHHHHHHHHHHhhcccceeeecccc
Confidence            479999999999999998888887 677777554

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.99  E-value=0.025  Score=37.71  Aligned_cols=36  Identities=17%  Similarity=0.136  Sum_probs=32.5

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGPP   42 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~   42 (426)
                      ..|.|+|||=-|-+++.+..+.|++|.+++......
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~~p   37 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEPA   37 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSCGG
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCCCc
Confidence            369999999999999999999999999999877643

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=93.76  E-value=0.036  Score=43.47  Aligned_cols=36  Identities=14%  Similarity=0.155  Sum_probs=31.9

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ...+|+|+|+|=++-+.+++|.+.|.++.|+.|...
T Consensus        17 ~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~~   52 (170)
T d1nyta1          17 PGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVS   52 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHH
T ss_pred             CCCEEEEECCcHHHHHHHHHhcccceEEEeccchHH
Confidence            346899999999999999999999999999987654

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=93.42  E-value=0.06  Score=39.42  Aligned_cols=37  Identities=19%  Similarity=0.369  Sum_probs=32.8

Q ss_pred             CCccEEEEcCCh-----------HHHHHHHHHHHcCCcEEEEcccCCC
Q 014324            5 EKGKAVIVGGSI-----------AGISCAHALLRAGWDVVVLEKAGGP   41 (426)
Q Consensus         5 ~~~~V~IvGaG~-----------aGl~~A~~L~~~G~~v~v~E~~~~~   41 (426)
                      +..+|+|+|+||           ++..++.+|++.|++++++.-++.-
T Consensus         6 ~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~T   53 (127)
T d1a9xa3           6 DIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPAT   53 (127)
T ss_dssp             SCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTC
T ss_pred             CCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchHh
Confidence            346899999999           7888999999999999999988874

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.23  E-value=0.041  Score=44.49  Aligned_cols=34  Identities=26%  Similarity=0.490  Sum_probs=30.7

Q ss_pred             ccEEEEcC-ChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            7 GKAVIVGG-SIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGa-G~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      .+|+|.|| |..|..++..|.++|++|+++.|++.
T Consensus         4 kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~   38 (205)
T d1hdoa_           4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSS   38 (205)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChh
Confidence            57999995 99999999999999999999988664

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=93.16  E-value=0.035  Score=43.75  Aligned_cols=34  Identities=15%  Similarity=0.135  Sum_probs=28.5

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCC-cEEEEcccCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGW-DVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~   40 (426)
                      -.|+|+|+|+.|++++..++..|. +|+++|....
T Consensus        29 ~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~   63 (174)
T d1p0fa2          29 STCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKD   63 (174)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGG
T ss_pred             CEEEEECCCchhHHHHHHHHHcCCceeeccCChHH
Confidence            359999999999999999999996 5777776554

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=93.08  E-value=0.049  Score=41.13  Aligned_cols=32  Identities=19%  Similarity=0.309  Sum_probs=28.0

Q ss_pred             ccEEEEc-CChHHHHHHHHHHHcCC--cEEEEccc
Q 014324            7 GKAVIVG-GSIAGISCAHALLRAGW--DVVVLEKA   38 (426)
Q Consensus         7 ~~V~IvG-aG~aGl~~A~~L~~~G~--~v~v~E~~   38 (426)
                      .+|.||| +|-.|.++|+.|..+|+  +++++|..
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~   35 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIP   35 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCG
T ss_pred             CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecC
Confidence            3799999 69999999999999986  68888864

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=92.97  E-value=0.039  Score=42.34  Aligned_cols=34  Identities=12%  Similarity=0.081  Sum_probs=30.6

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ++|.|||+|-.|.++|..|.+.|.++.|+++..+
T Consensus         1 MkIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~~   34 (152)
T d2ahra2           1 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLE   34 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHH
T ss_pred             CEEEEEeccHHHHHHHHHHHhCCCeEEEEcChHH
Confidence            4699999999999999999999999999987653

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=92.90  E-value=0.044  Score=43.06  Aligned_cols=30  Identities=20%  Similarity=0.257  Sum_probs=25.3

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEE
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVL   35 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~   35 (426)
                      .-+|+|+|+|+.|++++..++..|.+++++
T Consensus        29 g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~   58 (174)
T d1f8fa2          29 ASSFVTWGAGAVGLSALLAAKVCGASIIIA   58 (174)
T ss_dssp             TCEEEEESCSHHHHHHHHHHHHHTCSEEEE
T ss_pred             CCEEEEeCCCHHHhhhhhcccccccceeee
Confidence            347999999999999999999889876544

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=92.80  E-value=0.056  Score=42.16  Aligned_cols=36  Identities=11%  Similarity=0.248  Sum_probs=31.0

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCC-cEEEEcccCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGW-DVVVLEKAGG   40 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~   40 (426)
                      ...+|+|+|+|=++-+.+..|.+.|. ++.|+.|..+
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~   52 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVK   52 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHH
Confidence            34689999999999999999999997 7889877543

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=92.56  E-value=0.059  Score=41.24  Aligned_cols=34  Identities=15%  Similarity=0.373  Sum_probs=29.4

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcC-CcEEEEcccCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAG-WDVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G-~~v~v~E~~~~   40 (426)
                      ++|.+||+|--|.++|..|.+.| .+|.+++|+++
T Consensus         1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~   35 (152)
T d1yqga2           1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAE   35 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHH
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChh
Confidence            47999999999999999888877 88988887764

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=92.37  E-value=0.064  Score=45.72  Aligned_cols=37  Identities=19%  Similarity=0.363  Sum_probs=33.1

Q ss_pred             CCccEEEEcC-ChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324            5 EKGKAVIVGG-SIAGISCAHALLRAGWDVVVLEKAGGP   41 (426)
Q Consensus         5 ~~~~V~IvGa-G~aGl~~A~~L~~~G~~v~v~E~~~~~   41 (426)
                      .+.+|+|.|| |-.|..++..|.++|++|+++.|.+..
T Consensus         2 ~kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~   39 (307)
T d1qyca_           2 SRSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTA   39 (307)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCT
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCcc
Confidence            3578999998 999999999999999999999987653

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=92.16  E-value=0.073  Score=45.63  Aligned_cols=36  Identities=28%  Similarity=0.386  Sum_probs=32.0

Q ss_pred             CCccEEEEcC-ChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            5 EKGKAVIVGG-SIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         5 ~~~~V~IvGa-G~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ++.+|+|.|| |-.|..++..|.++|++|+++.|...
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~   38 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEV   38 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCc
Confidence            4567999997 99999999999999999999988654

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=92.11  E-value=0.078  Score=40.15  Aligned_cols=32  Identities=19%  Similarity=0.163  Sum_probs=26.2

Q ss_pred             ccEEEEc-CChHHHHHHHHHHHc-C--CcEEEEccc
Q 014324            7 GKAVIVG-GSIAGISCAHALLRA-G--WDVVVLEKA   38 (426)
Q Consensus         7 ~~V~IvG-aG~aGl~~A~~L~~~-G--~~v~v~E~~   38 (426)
                      ++|.||| +|-.|.++|+.|+.+ +  -+++++|..
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~   36 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIA   36 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSS
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEeccc
Confidence            4799999 599999999988643 4  589999864

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=91.60  E-value=0.08  Score=41.45  Aligned_cols=34  Identities=12%  Similarity=0.246  Sum_probs=27.9

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCC-cEEEEcccCC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGW-DVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~   40 (426)
                      -.|+|+|+|+.|++++..++..|- +|+++++.+.
T Consensus        30 ~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~   64 (175)
T d1cdoa2          30 STCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPD   64 (175)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             CEEEEEecCCccchHHHHHHHHhhchheeecchHH
Confidence            359999999999999999999876 5777776654

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=91.52  E-value=0.077  Score=44.27  Aligned_cols=35  Identities=23%  Similarity=0.292  Sum_probs=31.0

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCC-cEEEEcccCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGW-DVVVLEKAGG   40 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~   40 (426)
                      ..+|+|||+|-.|..+|..|++.|+ +++|+|...-
T Consensus        30 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~V   65 (247)
T d1jw9b_          30 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTV   65 (247)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCccc
Confidence            4689999999999999999999998 7888886654

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=91.26  E-value=0.13  Score=40.61  Aligned_cols=35  Identities=11%  Similarity=0.173  Sum_probs=30.8

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCC-cEEEEcccCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGW-DVVVLEKAGG   40 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~   40 (426)
                      ..+|+|+|+|-+|-+++.+|.+.|. +++|+.|...
T Consensus        18 ~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~   53 (182)
T d1vi2a1          18 GKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE   53 (182)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSST
T ss_pred             CCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchH
Confidence            4689999999999999999999997 6888888765

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=91.09  E-value=0.13  Score=39.49  Aligned_cols=35  Identities=23%  Similarity=0.370  Sum_probs=30.1

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCC-cEEEEcccC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGW-DVVVLEKAG   39 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~   39 (426)
                      ...+|+|||+|-.|-..|..|..+|. +++|+-|..
T Consensus        23 ~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~   58 (159)
T d1gpja2          23 HDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTY   58 (159)
T ss_dssp             TTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSH
T ss_pred             ccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcH
Confidence            45789999999999999999999998 487877653

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=91.06  E-value=0.096  Score=41.03  Aligned_cols=33  Identities=15%  Similarity=0.174  Sum_probs=28.2

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCC-cEEEEcccCC
Q 014324            8 KAVIVGGSIAGISCAHALLRAGW-DVVVLEKAGG   40 (426)
Q Consensus         8 ~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~   40 (426)
                      .|+|+|+|..|++++..++..|. +|++++.++.
T Consensus        31 tVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~   64 (176)
T d2jhfa2          31 TCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKD   64 (176)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             EEEEECCCCcHHHHHHHHHHcCCceEEeecCcHH
Confidence            49999999999999999999985 7777776665

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=91.03  E-value=0.064  Score=45.40  Aligned_cols=34  Identities=18%  Similarity=0.183  Sum_probs=31.2

Q ss_pred             CccEEEEcC-ChHHHHHHHHHHHcCCcEEEEcccC
Q 014324            6 KGKAVIVGG-SIAGISCAHALLRAGWDVVVLEKAG   39 (426)
Q Consensus         6 ~~~V~IvGa-G~aGl~~A~~L~~~G~~v~v~E~~~   39 (426)
                      +++|+|.|| |-.|..++..|.++|++|+.++++.
T Consensus         1 ~MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~   35 (281)
T d1vl0a_           1 HMKILITGANGQLGREIQKQLKGKNVEVIPTDVQD   35 (281)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh
Confidence            367999998 9999999999999999999998865

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.72  E-value=0.11  Score=39.77  Aligned_cols=35  Identities=31%  Similarity=0.301  Sum_probs=32.2

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      -..|+|||-|..|-..|..|+..|.+|+|+|..+.
T Consensus        24 Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp~   58 (163)
T d1li4a1          24 GKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPI   58 (163)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CCEEEEeccccccHHHHHHHHhCCCeeEeeecccc
Confidence            35799999999999999999999999999999764

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=90.41  E-value=0.041  Score=40.69  Aligned_cols=37  Identities=16%  Similarity=0.026  Sum_probs=27.9

Q ss_pred             CCccEEEEcCChHHHHHHHHHHH-cCCcEEE-EcccCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLR-AGWDVVV-LEKAGGP   41 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~-~G~~v~v-~E~~~~~   41 (426)
                      ++++|+|+|||-+|.+++..+.+ .|++++. +|-.+..
T Consensus         2 ~~~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k   40 (126)
T d2dt5a2           2 RKWGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEK   40 (126)
T ss_dssp             SCEEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTT
T ss_pred             CCceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHh
Confidence            46799999999999998877654 4677554 4766654

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=90.25  E-value=0.17  Score=40.11  Aligned_cols=36  Identities=25%  Similarity=0.292  Sum_probs=32.0

Q ss_pred             CCccEEEEc-CChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            5 EKGKAVIVG-GSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         5 ~~~~V~IvG-aG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ....|+|.| +|-.|..+|..|+++|.+|+++.|+.+
T Consensus        22 ~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~   58 (191)
T d1luaa1          22 KGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLD   58 (191)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchH
Confidence            456899999 589999999999999999999998875

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=89.83  E-value=0.15  Score=39.77  Aligned_cols=33  Identities=21%  Similarity=0.110  Sum_probs=26.6

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCC-cEEEEcccC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGW-DVVVLEKAG   39 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~   39 (426)
                      -.|+|+|+|+.|+.++..++..|. .|++.|+.+
T Consensus        34 ~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~   67 (172)
T d1h2ba2          34 AYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKE   67 (172)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSH
T ss_pred             CEEEEeCCChHHHHHHHHHHhhcCcccccccchh
Confidence            469999999999999998888886 555566654

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=89.74  E-value=0.15  Score=39.57  Aligned_cols=33  Identities=9%  Similarity=0.107  Sum_probs=27.1

Q ss_pred             ccEEEEcC-ChHHHHHHHHHHHcCC-cEEEEcccC
Q 014324            7 GKAVIVGG-SIAGISCAHALLRAGW-DVVVLEKAG   39 (426)
Q Consensus         7 ~~V~IvGa-G~aGl~~A~~L~~~G~-~v~v~E~~~   39 (426)
                      -.|+|+|+ |+.|+.++..++..|. +|+++++++
T Consensus        29 ~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~   63 (170)
T d1jvba2          29 KTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVRE   63 (170)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSH
T ss_pred             CEEEEEeccccceeeeeecccccccccccccccch
Confidence            36999995 9999999998888885 777777664

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=89.69  E-value=0.077  Score=40.69  Aligned_cols=25  Identities=12%  Similarity=0.119  Sum_probs=21.8

Q ss_pred             CCccEEEEcC-ChHHHHHHHHHHHcC
Q 014324            5 EKGKAVIVGG-SIAGISCAHALLRAG   29 (426)
Q Consensus         5 ~~~~V~IvGa-G~aGl~~A~~L~~~G   29 (426)
                      ++++|.|||| |..|.++|+.|+..+
T Consensus         2 ~p~KV~IiGA~G~VG~~la~~l~~~~   27 (154)
T d5mdha1           2 EPIRVLVTGAAGQIAYSLLYSIGNGS   27 (154)
T ss_dssp             CCEEEEESSTTSHHHHTTHHHHHTTT
T ss_pred             CceEEEEECCCCHHHHHHHHHHHHHH
Confidence            4579999996 999999999998754

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=89.11  E-value=0.16  Score=35.18  Aligned_cols=35  Identities=26%  Similarity=0.305  Sum_probs=30.0

Q ss_pred             CCccEEEEcCChHHHHH-HHHHHHcCCcEEEEcccC
Q 014324            5 EKGKAVIVGGSIAGISC-AHALLRAGWDVVVLEKAG   39 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~-A~~L~~~G~~v~v~E~~~   39 (426)
                      ...+|-+||-|=+|+++ |..|.++|++|.-.|+..
T Consensus         7 ~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~   42 (96)
T d1p3da1           7 RVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIAD   42 (96)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCC
T ss_pred             hCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence            34689999999999777 999999999999888764

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=89.04  E-value=0.11  Score=39.81  Aligned_cols=26  Identities=12%  Similarity=0.147  Sum_probs=22.5

Q ss_pred             CCccEEEEcC-ChHHHHHHHHHHHcCC
Q 014324            5 EKGKAVIVGG-SIAGISCAHALLRAGW   30 (426)
Q Consensus         5 ~~~~V~IvGa-G~aGl~~A~~L~~~G~   30 (426)
                      +.++|.|||| |..|.++|+.|+..++
T Consensus         3 ~p~KV~IiGA~G~VG~~~a~~l~~~~l   29 (154)
T d1y7ta1           3 APVRVAVTGAAGQIGYSLLFRIAAGEM   29 (154)
T ss_dssp             CCEEEEESSTTSHHHHHHHHHHHTTTT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhccc
Confidence            4569999997 9999999999998753

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=88.73  E-value=0.17  Score=39.33  Aligned_cols=36  Identities=19%  Similarity=0.227  Sum_probs=31.0

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ....|+|+|+|=++-+++..|.+.+.+++|+-|...
T Consensus        17 ~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~   52 (171)
T d1p77a1          17 PNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFS   52 (171)
T ss_dssp             TTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHH
T ss_pred             CCCEEEEECCcHHHHHHHHHHcccCceeeeccchHH
Confidence            346899999999999999999988889999977653

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=88.44  E-value=0.2  Score=38.27  Aligned_cols=35  Identities=26%  Similarity=0.217  Sum_probs=32.6

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      -..|+|+|=|-.|-.+|..|+..|.+|+|.|..+-
T Consensus        23 Gk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi   57 (163)
T d1v8ba1          23 GKIVVICGYGDVGKGCASSMKGLGARVYITEIDPI   57 (163)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHH
T ss_pred             CCEEEEecccccchhHHHHHHhCCCEEEEEecCch
Confidence            45899999999999999999999999999999874

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=88.42  E-value=0.26  Score=43.26  Aligned_cols=37  Identities=24%  Similarity=0.242  Sum_probs=32.6

Q ss_pred             CCccEEEEc-CChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324            5 EKGKAVIVG-GSIAGISCAHALLRAGWDVVVLEKAGGP   41 (426)
Q Consensus         5 ~~~~V~IvG-aG~aGl~~A~~L~~~G~~v~v~E~~~~~   41 (426)
                      ++++|+|.| +|..|..++..|.++|++|+++++....
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~   51 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNE   51 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCcc
Confidence            467899998 7999999999999999999999976654

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=88.22  E-value=0.19  Score=39.10  Aligned_cols=33  Identities=12%  Similarity=0.141  Sum_probs=26.0

Q ss_pred             ccEEEEcCChHHHHHHHHHHHcCCc-EEEEcccC
Q 014324            7 GKAVIVGGSIAGISCAHALLRAGWD-VVVLEKAG   39 (426)
Q Consensus         7 ~~V~IvGaG~aGl~~A~~L~~~G~~-v~v~E~~~   39 (426)
                      -.|+|+|+|+.|++++..++..|.+ |++.+.++
T Consensus        30 ~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~   63 (176)
T d2fzwa2          30 SVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINK   63 (176)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCG
T ss_pred             CEEEEecchhHHHHHHHHHHHHhcCceEEEcccH
Confidence            3589999999999999999999975 54455433

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.08  E-value=0.26  Score=38.30  Aligned_cols=32  Identities=9%  Similarity=0.182  Sum_probs=27.2

Q ss_pred             ccEEEEcC-ChHHHHHHHHHHHcCCcEEEEccc
Q 014324            7 GKAVIVGG-SIAGISCAHALLRAGWDVVVLEKA   38 (426)
Q Consensus         7 ~~V~IvGa-G~aGl~~A~~L~~~G~~v~v~E~~   38 (426)
                      -.|+|+|| |+.|+++...+...|.+|+++..+
T Consensus        30 ~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~   62 (174)
T d1yb5a2          30 ESVLVHGASGGVGLAACQIARAYGLKILGTAGT   62 (174)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CEEEEEeccccccccccccccccCccccccccc
Confidence            46999996 999999888888889999887754

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=87.85  E-value=0.21  Score=40.71  Aligned_cols=37  Identities=11%  Similarity=0.261  Sum_probs=31.7

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP   41 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   41 (426)
                      ...+|+|||+|.+|.-+|..|++.+.+++++=+.+..
T Consensus        31 ~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~~~   67 (235)
T d1w4xa2          31 SGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPHF   67 (235)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCC
T ss_pred             CCCEEEEECCCccHHHHHHHHHhhhccccccccccce
Confidence            3468999999999999999999999988887666653

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=87.71  E-value=0.35  Score=37.91  Aligned_cols=37  Identities=16%  Similarity=0.170  Sum_probs=33.1

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP   41 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   41 (426)
                      ....|.|||.|..|-..|..|..-|++|.++++....
T Consensus        41 ~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~~   77 (181)
T d1qp8a1          41 QGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKE   77 (181)
T ss_dssp             TTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCCC
T ss_pred             cCceEEEeccccccccceeeeeccccccccccccccc
Confidence            3457999999999999999999999999999987653

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=87.55  E-value=0.22  Score=38.94  Aligned_cols=35  Identities=17%  Similarity=0.285  Sum_probs=29.6

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ...+|+|+|+|=++-+++++|.+.| ++.|+-|...
T Consensus        17 ~~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~~   51 (177)
T d1nvta1          17 KDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVE   51 (177)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHH
T ss_pred             CCCEEEEECCcHHHHHHHHHHcccc-ceeeehhhhh
Confidence            4568999999999999999998877 8888877654

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.96  E-value=0.17  Score=41.46  Aligned_cols=49  Identities=8%  Similarity=-0.094  Sum_probs=35.4

Q ss_pred             HHHHHHhcCC-CCe-eEeeeeEEEEEEecCCceEEEEEEeccCCceEEEeecEEEe
Q 014324          112 LHGLLYNALP-PEI-FLRGHQYLSFCISEVKTTVTVKAKVLQTDEVIEIKGNLLVA  165 (426)
Q Consensus       112 l~~~L~~~~~-~~~-i~~~~~v~~~~~~~~~~~v~v~~~~~~~g~~~~~~~d~vI~  165 (426)
                      +.+.|.+.++ .|+ |+++++|.+|..++++..+++.   ..+|++  ++||.||.
T Consensus       238 l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~v~~v---~~~g~~--~~ad~VI~  288 (297)
T d2bcgg1         238 LPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGV---KTKLGT--FKAPLVIA  288 (297)
T ss_dssp             HHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEE---EETTEE--EECSCEEE
T ss_pred             HHHHHHHHHHhcCCEEEeCCEeeEEEEECCCCEEEEE---EcCCEE--EECCEEEE
Confidence            4455555554 477 9999999999887776666543   356765  89999885

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=86.87  E-value=0.24  Score=38.47  Aligned_cols=34  Identities=12%  Similarity=0.163  Sum_probs=28.2

Q ss_pred             ccEEEEcC-ChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            7 GKAVIVGG-SIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGa-G~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      -.|+|.|| |+.|+++...++..|.+|+++++++.
T Consensus        29 ~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~   63 (171)
T d1iz0a2          29 EKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPE   63 (171)
T ss_dssp             CEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CEEEEEeccccchhhhhhhhccccccccccccccc
Confidence            35888896 99999998888888999988886543

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=85.86  E-value=0.47  Score=38.23  Aligned_cols=38  Identities=32%  Similarity=0.364  Sum_probs=31.6

Q ss_pred             CCCccEEEEcCChHHHHHHHHHHHcCC-cEEEEcccCCC
Q 014324            4 KEKGKAVIVGGSIAGISCAHALLRAGW-DVVVLEKAGGP   41 (426)
Q Consensus         4 ~~~~~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~~   41 (426)
                      ..+.+|+|.|||-||+..|..|...+. ++.++|+.--.
T Consensus        24 l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~GLi   62 (222)
T d1vl6a1          24 IEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGIL   62 (222)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEEC
T ss_pred             hhhcEEEEEChHHHHHHHHHHHHHhcccceEeecceeEE
Confidence            356789999999999999999998886 58888886544

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=85.80  E-value=0.42  Score=39.56  Aligned_cols=33  Identities=18%  Similarity=0.327  Sum_probs=26.2

Q ss_pred             cEEEE-cC-ChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            8 KAVIV-GG-SIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         8 ~V~Iv-Ga-G~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      +|+|| || +-.|++.|..|+++|.+|++.+++..
T Consensus         2 kVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~   36 (257)
T d1fjha_           2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDA   36 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChH
Confidence            45444 64 44789999999999999999998764

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=85.74  E-value=0.42  Score=37.16  Aligned_cols=25  Identities=8%  Similarity=0.052  Sum_probs=21.4

Q ss_pred             CCccEEEEcC-ChHHHHHHHHHHHcC
Q 014324            5 EKGKAVIVGG-SIAGISCAHALLRAG   29 (426)
Q Consensus         5 ~~~~V~IvGa-G~aGl~~A~~L~~~G   29 (426)
                      +..+|.|+|| |..|.++|+.|++..
T Consensus        23 ~~~kV~I~GA~G~Ig~~l~~~La~g~   48 (175)
T d7mdha1          23 KLVNIAVSGAAGMISNHLLFKLASGE   48 (175)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTT
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHcCc
Confidence            3458999996 999999999999853

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=85.46  E-value=0.62  Score=37.06  Aligned_cols=34  Identities=21%  Similarity=0.189  Sum_probs=30.3

Q ss_pred             CCccEEEEcCChHHHHHHHHHHHcCCcEEEEccc
Q 014324            5 EKGKAVIVGGSIAGISCAHALLRAGWDVVVLEKA   38 (426)
Q Consensus         5 ~~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~   38 (426)
                      ...+|+|-|-|=+|..+|..|.+.|.+|++.|..
T Consensus        26 ~gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d   59 (201)
T d1c1da1          26 DGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTD   59 (201)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEecch
Confidence            4467999999999999999999999999988743

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=85.41  E-value=0.5  Score=41.13  Aligned_cols=36  Identities=19%  Similarity=0.173  Sum_probs=31.6

Q ss_pred             CCccEEEEcC-ChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            5 EKGKAVIVGG-SIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         5 ~~~~V~IvGa-G~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ++..|+|+|| |-.|..++..|.++|++|+++=|++.
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~   38 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLK   38 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSC
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcc
Confidence            4678999996 99999999999999999999977543

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=85.10  E-value=0.26  Score=36.14  Aligned_cols=31  Identities=32%  Similarity=0.467  Sum_probs=26.3

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            8 KAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         8 ~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      -|+|+|.|..|..++..|.  |.+|+|+|..+.
T Consensus         2 HivI~G~g~~g~~l~~~L~--~~~i~vi~~d~~   32 (129)
T d2fy8a1           2 HVVICGWSESTLECLRELR--GSEVFVLAEDEN   32 (129)
T ss_dssp             CEEEESCCHHHHHHHHTSC--GGGEEEEESCTT
T ss_pred             EEEEECCCHHHHHHHHHHc--CCCCEEEEcchH
Confidence            4899999999999999995  557888888765

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=84.90  E-value=0.35  Score=40.24  Aligned_cols=40  Identities=28%  Similarity=0.282  Sum_probs=30.3

Q ss_pred             CCCC--CCccEEEEcCC---hHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            1 MEKK--EKGKAVIVGGS---IAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         1 m~~~--~~~~V~IvGaG---~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ||+.  +...++|.||+   =-|.+.|..|+++|.+|++.++...
T Consensus         1 M~~~~L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~   45 (256)
T d1ulua_           1 MLTVDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAER   45 (256)
T ss_dssp             CEEECCTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CCCcCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHH
Confidence            5443  34568888864   2699999999999999988877643

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=84.58  E-value=0.6  Score=39.58  Aligned_cols=32  Identities=25%  Similarity=0.287  Sum_probs=25.8

Q ss_pred             EEEEc-CChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            9 AVIVG-GSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         9 V~IvG-aG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      |+|-| +|=.|.+.|..|+++|.+|++.+++..
T Consensus        28 alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~   60 (294)
T d1w6ua_          28 AFITGGGTGLGKGMTTLLSSLGAQCVIASRKMD   60 (294)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             EEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHH
Confidence            44444 456788999999999999999998754

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=84.49  E-value=0.52  Score=41.00  Aligned_cols=35  Identities=14%  Similarity=0.038  Sum_probs=31.6

Q ss_pred             CccEEEEc-CChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            6 KGKAVIVG-GSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         6 ~~~V~IvG-aG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ..+|+|.| +|..|..++..|.++|++|.++++...
T Consensus         8 ~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~   43 (356)
T d1rkxa_           8 GKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAP   43 (356)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            46899999 689999999999999999999998765

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=83.59  E-value=0.54  Score=36.33  Aligned_cols=35  Identities=23%  Similarity=0.220  Sum_probs=26.0

Q ss_pred             CccEEEEcCChHHHHHHHH--HHHc----CCcEEEEcccCC
Q 014324            6 KGKAVIVGGSIAGISCAHA--LLRA----GWDVVVLEKAGG   40 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~--L~~~----G~~v~v~E~~~~   40 (426)
                      +++|.|||||-+|.++++.  |.+.    +.+++++|.++.
T Consensus         2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~   42 (171)
T d1obba1           2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEE   42 (171)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHH
T ss_pred             CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCch
Confidence            5799999999999776542  3322    458999998765

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=83.49  E-value=0.65  Score=38.16  Aligned_cols=38  Identities=16%  Similarity=0.274  Sum_probs=30.1

Q ss_pred             CCCCccEEEEcCCh-HHHHHHHHHHHcCCcEEEEcccCC
Q 014324            3 KKEKGKAVIVGGSI-AGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         3 ~~~~~~V~IvGaG~-aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      +.+...|+|-||+- .|.+.|..|+++|.+|++.+++..
T Consensus         2 ~L~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~   40 (242)
T d1ulsa_           2 RLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEG   40 (242)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            34455677777654 889999999999999999998653

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=82.97  E-value=0.96  Score=30.53  Aligned_cols=33  Identities=24%  Similarity=0.100  Sum_probs=27.7

Q ss_pred             ccEEEEcCChHHH-HHHHHHHHcCCcEEEEcccC
Q 014324            7 GKAVIVGGSIAGI-SCAHALLRAGWDVVVLEKAG   39 (426)
Q Consensus         7 ~~V~IvGaG~aGl-~~A~~L~~~G~~v~v~E~~~   39 (426)
                      ++|=+||-|=+|+ ++|..|.++|++|.-.|+..
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~   35 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEE   35 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            5688899888887 45999999999999998664

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=82.74  E-value=0.79  Score=36.29  Aligned_cols=35  Identities=14%  Similarity=0.107  Sum_probs=31.7

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ...|.|||-|-.|...|..|.--|++|.++++...
T Consensus        43 gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~~   77 (197)
T d1j4aa1          43 DQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRN   77 (197)
T ss_dssp             GSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CCeEEEecccccchhHHHhHhhhcccccccCcccc
Confidence            46899999999999999999999999999997654

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=82.71  E-value=0.74  Score=36.51  Aligned_cols=36  Identities=11%  Similarity=0.083  Sum_probs=32.4

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP   41 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   41 (426)
                      ...|.|||.|-.|..+|..|+--|++|..+++....
T Consensus        45 ~ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~   80 (199)
T d1dxya1          45 QQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMK   80 (199)
T ss_dssp             GSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCS
T ss_pred             ceeeeeeecccccccccccccccceeeeccCCccch
Confidence            357999999999999999999999999999987654

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.53  E-value=0.6  Score=38.76  Aligned_cols=33  Identities=30%  Similarity=0.365  Sum_probs=27.1

Q ss_pred             ccEEEEcCCh-HHHHHHHHHHHcCCcEEEEcccC
Q 014324            7 GKAVIVGGSI-AGISCAHALLRAGWDVVVLEKAG   39 (426)
Q Consensus         7 ~~V~IvGaG~-aGl~~A~~L~~~G~~v~v~E~~~   39 (426)
                      .-|+|.||+- .|.++|..|+++|.+|++.+++.
T Consensus        11 Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~   44 (257)
T d1xg5a_          11 RLALVTGASGGIGAAVARALVQQGLKVVGCARTV   44 (257)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4477777765 67899999999999999998764

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=82.32  E-value=0.66  Score=39.27  Aligned_cols=37  Identities=24%  Similarity=0.196  Sum_probs=30.7

Q ss_pred             CCCCccEEEEcCC---hHHHHHHHHHHHcCCcEEEEcccC
Q 014324            3 KKEKGKAVIVGGS---IAGISCAHALLRAGWDVVVLEKAG   39 (426)
Q Consensus         3 ~~~~~~V~IvGaG---~aGl~~A~~L~~~G~~v~v~E~~~   39 (426)
                      +++...++|.||+   =.|.+.|..|+++|.+|++..+.+
T Consensus         5 ~L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~~   44 (297)
T d1d7oa_           5 DLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVP   44 (297)
T ss_dssp             CCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHH
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCch
Confidence            3456779999986   489999999999999999987654

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=82.23  E-value=0.6  Score=40.39  Aligned_cols=34  Identities=26%  Similarity=0.518  Sum_probs=29.6

Q ss_pred             ccEEEEcC-ChHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            7 GKAVIVGG-SIAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         7 ~~V~IvGa-G~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      ++|+|.|| |-.|..++..|.++|++|+++++...
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~~~   35 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCN   35 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCC
Confidence            36899986 78999999999999999999987554

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.08  E-value=0.5  Score=42.50  Aligned_cols=35  Identities=17%  Similarity=0.287  Sum_probs=31.7

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCC-cEEEEcccCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGW-DVVVLEKAGG   40 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~   40 (426)
                      ..+|+|||+|-.|..+|..|++.|+ +++|+|...-
T Consensus        37 ~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~V   72 (426)
T d1yovb1          37 TCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTI   72 (426)
T ss_dssp             HCCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCBC
T ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCc
Confidence            4589999999999999999999998 7999998764

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=81.72  E-value=0.59  Score=38.15  Aligned_cols=35  Identities=20%  Similarity=0.430  Sum_probs=30.0

Q ss_pred             ccEEEEcCCh-HHHHHHHHHHHcCCcEEEEcccCCC
Q 014324            7 GKAVIVGGSI-AGISCAHALLRAGWDVVVLEKAGGP   41 (426)
Q Consensus         7 ~~V~IvGaG~-aGl~~A~~L~~~G~~v~v~E~~~~~   41 (426)
                      -+|+|.||+- .|.+.|..|+++|++|+++++....
T Consensus         3 gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~~   38 (235)
T d1ooea_           3 GKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSAND   38 (235)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCT
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCchh
Confidence            4688998865 6889999999999999999998764

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=81.13  E-value=0.92  Score=35.73  Aligned_cols=36  Identities=17%  Similarity=0.127  Sum_probs=32.2

Q ss_pred             CccEEEEcCChHHHHHHHHHHHcCCcEEEEcccCCC
Q 014324            6 KGKAVIVGGSIAGISCAHALLRAGWDVVVLEKAGGP   41 (426)
Q Consensus         6 ~~~V~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   41 (426)
                      ...|.|||.|-.|-..|..|..-|++|..+++....
T Consensus        49 gktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~   84 (193)
T d1mx3a1          49 GETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSD   84 (193)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCT
T ss_pred             CceEEEeccccccccceeeeeccccceeeccCcccc
Confidence            357999999999999999999999999999987653

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=80.75  E-value=0.81  Score=38.16  Aligned_cols=36  Identities=17%  Similarity=0.151  Sum_probs=29.6

Q ss_pred             CCccEEEEcC-C--hHHHHHHHHHHHcCCcEEEEcccCC
Q 014324            5 EKGKAVIVGG-S--IAGISCAHALLRAGWDVVVLEKAGG   40 (426)
Q Consensus         5 ~~~~V~IvGa-G--~aGl~~A~~L~~~G~~v~v~E~~~~   40 (426)
                      +...++|.|| |  =.|.+.|..|+++|.+|++.+++..
T Consensus         4 ~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~   42 (274)
T d2pd4a1           4 KGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES   42 (274)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            3456888886 3  3799999999999999999998753

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=80.45  E-value=0.93  Score=36.94  Aligned_cols=36  Identities=19%  Similarity=0.424  Sum_probs=30.4

Q ss_pred             ccEEEEcCCh-HHHHHHHHHHHcCCcEEEEcccCCCC
Q 014324            7 GKAVIVGGSI-AGISCAHALLRAGWDVVVLEKAGGPP   42 (426)
Q Consensus         7 ~~V~IvGaG~-aGl~~A~~L~~~G~~v~v~E~~~~~~   42 (426)
                      ..|+|.||+- -|.++|..|+++|.+|.++++.....
T Consensus         3 K~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~~~   39 (236)
T d1dhra_           3 RRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEE   39 (236)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcccc
Confidence            5688999854 78999999999999999998877643