Citrus Sinensis ID: 014330

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420------
MGFDEEAGSSSYTLPVPPYPREDTPLLTKSKPLSTRSKTFANVFISIVGAGVLGLPYTFKKTGWIMGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKINSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSIPTLTHLAPLSIFADIVDLGAMGLVMVEDVMISMKQRPALKAFGDFSVFSYGIGVAVYAFEGVGMILPLESETRNKQRFGRILGWCMAFISLLYGSFGALGYFAFGEETKDIITTNFGAGLVSTLVNVGLCVNLFLTFPLMMNPVYEVVERRFCDYRYCLWLRWAVVLGVSLVALLVPNFADFLSLVGSSVCCILGFVLPALFHLIVFKQELGWNGIVMDAALLVFGVVIGISGTWSSLMEIVAPKA
cccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHEEEEccccccccccccccccccHHHHHHHHHHHHHcccEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
cccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHcHHccEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHEHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHccEEEEEHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEccHEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
mgfdeeagsssytlpvppypredtplltkskplstrskTFANVFISIVGAgvlglpytfkktgWIMGLLMLFSVAALTYYCMMLLVHTRRKLetihgfskinsfgdlgytvcgSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTIlgflspkalyiwgcfpfqlglnsiptlthlaplsifADIVDLGAMGLVMVEDVMISMkqrpalkafgdfsvfsYGIGVAVYAFEgvgmilplesetrNKQRFGRILGWCMAFISLLYGsfgalgyfafgeetKDIITTNFGAGLVSTLVNVGLCVNLfltfplmmnpvyevvERRFCDYRYCLWLRWAVVLGVSLVALLVPNFADFLSLVGSSVCCILGFVLPALFHLIVFKQELGWNGIVMDAALLVFGVVIGISGTWSSLMEIVAPKA
mgfdeeagsssytlpvppypredTPLLTKSKPLSTRSKTFANVFISIVGAGVLGLPYTFKKTGWIMGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKINSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSIPTLTHLAPLSIFADIVDLGAMGLVMVEDVMISMKQRPALKAFGDFSVFSYGIGVAVYAFEGVGMILPLESETRNKQRFGRILGWCMAFISLLYGSFGALGYFAFGEETKDIITTNFGAGLVSTLVNVGLCVNLFLTFPLMMNPVYEVVERRFCDYRYCLWLRWAVVLGVSLVALLVPNFADFLSLVGSSVCCILGFVLPALFHLIVFKQELGWNGIVMDAALLVFGVVIGISGTWSSLMEIVAPKA
MGFDEEAGSSSYTLPVPPYPREDTPLLTKSKPLSTRSKTFANVFISIVGAGVLGLPYTFKKTGWIMGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKINSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSIPTLTHLAPLSIFADIVDLGAMGLVMVEDVMISMKQRPALKAFGDFSVFSYGIGVAVYAFEGVGMILPLESETRNKQRFGRILGWCMAFISLLYGSFGALGYFAFGEETKDIITTNFGAGLVSTLVNVGLCVNLFLTFPLMMNPVYEVVERRFCDYRYCLWLRWavvlgvslvallvPNFADFLSLVGSSVCCILGFVLPALFHLIVFKQELGWNGIVMDAALLVFGVVIGISGTWSSLMEIVAPKA
**************************************TFANVFISIVGAGVLGLPYTFKKTGWIMGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKINSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSIPTLTHLAPLSIFADIVDLGAMGLVMVEDVMISMKQRPALKAFGDFSVFSYGIGVAVYAFEGVGMILPLESETRNKQRFGRILGWCMAFISLLYGSFGALGYFAFGEETKDIITTNFGAGLVSTLVNVGLCVNLFLTFPLMMNPVYEVVERRFCDYRYCLWLRWAVVLGVSLVALLVPNFADFLSLVGSSVCCILGFVLPALFHLIVFKQELGWNGIVMDAALLVFGVVIGISGTWSSLMEIV****
**************************************TFANVFISIVGAGVLGLPYTFKKTGWIMGLLMLFSVAALTYYCMMLLVHTRRKLE**H**S***SFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSIPTLTHLAPLSIFADIVDLGAMGLVMVEDVMISMKQRPALKAFGDFSVFSYGIGVAVYAFEGVGMILPLESETRNKQRFGRILGWCMAFISLLYGSFGALGYFAFGEETKDIITTNFGAGLVSTLVNVGLCVNLFLTFPLMMNPVYEVVERRFCDYRYCLWLRWAVVLGVSLVALLVPNFADFLSLVGSSVCCILGFVLPALFHLIVFKQELGWNGIVMDAALLVFGVVIGISGTWSSLMEIVAP**
***********YTLPVPPYPREDTPLLTKSKPLSTRSKTFANVFISIVGAGVLGLPYTFKKTGWIMGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKINSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSIPTLTHLAPLSIFADIVDLGAMGLVMVEDVMISMKQRPALKAFGDFSVFSYGIGVAVYAFEGVGMILPLESETRNKQRFGRILGWCMAFISLLYGSFGALGYFAFGEETKDIITTNFGAGLVSTLVNVGLCVNLFLTFPLMMNPVYEVVERRFCDYRYCLWLRWAVVLGVSLVALLVPNFADFLSLVGSSVCCILGFVLPALFHLIVFKQELGWNGIVMDAALLVFGVVIGISGTWSSLMEIVAPKA
*******************************PLSTRSKTFANVFISIVGAGVLGLPYTFKKTGWIMGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKINSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSIPTLTHLAPLSIFADIVDLGAMGLVMVEDVMISMKQRPALKAFGDFSVFSYGIGVAVYAFEGVGMILPLESETRNKQRFGRILGWCMAFISLLYGSFGALGYFAFGEETKDIITTNFGAGLVSTLVNVGLCVNLFLTFPLMMNPVYEVVERRFCDYRYCLWLRWAVVLGVSLVALLVPNFADFLSLVGSSVCCILGFVLPALFHLIVFKQELGWNGIVMDAALLVFGVVIGISGTWSSLMEIVAP**
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MGFDEEAGSSSYTLPVPPYPREDTPLLTKSKPLSTRSKTFANVFISIVGAGVLGLPYTFKKTGWIMGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKINSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSIPTLTHLAPLSIFADIVDLGAMGLVMVEDVMISMKQRPALKAFGDFSVFSYGIGVAVYAFEGVGMILPLESETRNKQRFGRILGWCMAFISLLYGSFGALGYFAFGEETKDIITTNFGAGLVSTLVNVGLCVNLFLTFPLMMNPVYEVVERRFCDYRYCLWLRWAVVLGVSLVALLVPNFADFLSLVGSSVCCILGFVLPALFHLIVFKQELGWNGIVMDAALLVFGVVIGISGTWSSLMEIVAPKA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query426 2.2.26 [Sep-21-2011]
Q7Z2H8476 Proton-coupled amino acid yes no 0.899 0.804 0.281 2e-33
Q4KL91522 Proton-coupled amino acid N/A no 0.889 0.726 0.283 6e-32
Q495N2470 Proton-coupled amino acid no no 0.896 0.812 0.268 2e-31
Q811P0477 Proton-coupled amino acid yes no 0.882 0.788 0.281 2e-30
Q4V8B1477 Proton-coupled amino acid yes no 0.887 0.792 0.270 2e-30
Q10074656 Vacuolar amino acid trans yes no 0.816 0.530 0.283 4e-29
Q924A5475 Proton-coupled amino acid no no 0.892 0.8 0.285 4e-28
Q8K4D3475 Proton-coupled amino acid no no 0.884 0.793 0.283 2e-27
Q6YBV0504 Proton-coupled amino acid no no 0.903 0.763 0.265 2e-26
Q8CH36500 Proton-coupled amino acid no no 0.894 0.762 0.258 4e-26
>sp|Q7Z2H8|S36A1_HUMAN Proton-coupled amino acid transporter 1 OS=Homo sapiens GN=SLC36A1 PE=1 SV=1 Back     alignment and function desciption
 Score =  144 bits (362), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 120/426 (28%), Positives = 201/426 (47%), Gaps = 43/426 (10%)

Query: 34  STRSKTFANVFISIVGAGVLGLPYTFKKTGWIMGLLMLFSVAALTYYCMMLLVHTRRKLE 93
           +T  +T  ++    +G G+LGLP   K  G +MG + L  +  +  +CM +LV       
Sbjct: 47  TTWFQTLIHLLKGNIGTGLLGLPLAVKNAGIVMGPISLLIIGIVAVHCMGILVKCAH--- 103

Query: 94  TIHGFSKIN-SFGDLGYTV--------CGSV------GRVAVDAMIVLAQAGFCVSYLIF 138
             H   ++N SF D G TV        C  +      GR  VD  +++ Q GFC  Y +F
Sbjct: 104 --HFCRRLNKSFVDYGDTVMYGLESSPCSWLRNHAHWGRRVVDFFLIVTQLGFCCVYFVF 161

Query: 139 IANTLTHMI-------NNSTTSQTILGFLSP---KALYIWGCFPFQLGLNSIPTLTHLAP 188
           +A+    +I       NN   ++T++  L+P     LY+    PF + L  I  L  L+ 
Sbjct: 162 LADNFKQVIEAANGTTNNCHNNETVI--LTPTMDSRLYMLSFLPFLVLLVFIRNLRALSI 219

Query: 189 LSIFADIVDLGAMGLVMVEDVMISMKQRPA-LKAFGDFSVFSYGIGVAVYAFEGVGMILP 247
            S+ A+I  L  + LVM+   ++     P+ L     +  +    G A+++FEG+GM+LP
Sbjct: 220 FSLLANITML--VSLVMIYQFIVQRIPDPSHLPLVAPWKTYPLFFGTAIFSFEGIGMVLP 277

Query: 248 LESETRNKQRFGRILGWCMAFISLLYGSFGALGYFAFGEETKDIITTNFGAGLVSTLVNV 307
           LE++ ++ ++F  IL   M  +++LY S G LGY  FG   +  IT N     +   V +
Sbjct: 278 LENKMKDPRKFPLILYLGMVIVTILYISLGCLGYLQFGANIQGSITLNLPNCWLYQSVKL 337

Query: 308 GLCVNLFLTFPLMMNPVYEVVERRF-------CDYRYCLWLRWAVVLGVSLVALLVPNFA 360
              + +F T+ L      E++   F       C+    L++R  +V    ++A+L+P   
Sbjct: 338 LYSIGIFFTYALQFYVPAEIIIPFFVSRAPEHCELVVDLFVRTVLVCLTCILAILIPRLD 397

Query: 361 DFLSLVGSSVCCILGFVLPALFHLIVFKQE-LGWNGIVMDAALLVFGVVIGISGTWSSLM 419
             +SLVGS     L  ++P L  +  F  E +    I  DA + + G V  + GT+ +L 
Sbjct: 398 LVISLVGSVSSSALALIIPPLLEVTTFYSEGMSPLTIFKDALISILGFVGFVVGTYEALY 457

Query: 420 EIVAPK 425
           E++ P 
Sbjct: 458 ELIQPS 463
Neutral amino acid/proton symporter. Has a pH-dependent electrogenic transport activity for small amino acids such as glycine, alanine and proline. Besides small apolar L-amino acids, it also recognize their D-enantiomers and selected amino acid derivatives such as gamma-aminobutyric acid.
Homo sapiens (taxid: 9606)
>sp|Q4KL91|S36A4_XENLA Proton-coupled amino acid transporter 4 OS=Xenopus laevis GN=slc36a4 PE=2 SV=1 Back     alignment and function description
>sp|Q495N2|S36A3_HUMAN Proton-coupled amino acid transporter 3 OS=Homo sapiens GN=SLC36A3 PE=2 SV=2 Back     alignment and function description
>sp|Q811P0|S36A3_MOUSE Proton-coupled amino acid transporter 3 OS=Mus musculus GN=Slc36a3 PE=2 SV=1 Back     alignment and function description
>sp|Q4V8B1|S36A3_RAT Proton-coupled amino acid transporter 3 OS=Rattus norvegicus GN=Slc36a3 PE=2 SV=1 Back     alignment and function description
>sp|Q10074|AVT3_SCHPO Vacuolar amino acid transporter 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=avt3 PE=1 SV=1 Back     alignment and function description
>sp|Q924A5|S36A1_RAT Proton-coupled amino acid transporter 1 OS=Rattus norvegicus GN=Slc36a1 PE=2 SV=1 Back     alignment and function description
>sp|Q8K4D3|S36A1_MOUSE Proton-coupled amino acid transporter 1 OS=Mus musculus GN=Slc36a1 PE=2 SV=1 Back     alignment and function description
>sp|Q6YBV0|S36A4_HUMAN Proton-coupled amino acid transporter 4 OS=Homo sapiens GN=SLC36A4 PE=1 SV=1 Back     alignment and function description
>sp|Q8CH36|S36A4_MOUSE Proton-coupled amino acid transporter 4 OS=Mus musculus GN=Slc36a4 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query426
224084123401 aromatic and neutral amino acid transpor 0.938 0.997 0.802 0.0
225438450422 PREDICTED: proton-coupled amino acid tra 0.990 1.0 0.748 0.0
255561435426 amino acid transporter, putative [Ricinu 0.997 0.997 0.762 1e-180
296082558402 unnamed protein product [Vitis vinifera] 0.943 1.0 0.718 1e-176
255572413433 amino acid transporter, putative [Ricinu 0.988 0.972 0.694 1e-171
147806138394 hypothetical protein VITISV_038750 [Viti 0.924 1.0 0.699 1e-171
449444417427 PREDICTED: proton-coupled amino acid tra 0.992 0.990 0.691 1e-166
224102785428 aromatic and neutral amino acid transpor 0.988 0.983 0.668 1e-165
224132448427 aromatic and neutral amino acid transpor 0.988 0.985 0.661 1e-164
357484171422 Proton-coupled amino acid transporter [M 0.983 0.992 0.689 1e-163
>gi|224084123|ref|XP_002307218.1| aromatic and neutral amino acid transporter [Populus trichocarpa] gi|222856667|gb|EEE94214.1| aromatic and neutral amino acid transporter [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  671 bits (1732), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/401 (80%), Positives = 365/401 (91%), Gaps = 1/401 (0%)

Query: 21  REDTPLLTKSKPLSTRSKTFANVFISIVGAGVLGLPYTFKKTGWIMGLLMLFSVAALTYY 80
           REDTPLL+K  P+S++ KTFANVFI+IVGAGVLGLPYTFKKTGW+MG +M+FSVA LTYY
Sbjct: 1   REDTPLLSKRPPVSSQGKTFANVFIAIVGAGVLGLPYTFKKTGWVMGSIMVFSVAFLTYY 60

Query: 81  CMMLLVHTRRKLETIHGFSKINSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIA 140
           CMMLLVHTRRKLE++ GFSKI SFGDLG+TVCG +GR AVD MIVLAQAGFCVSYLIFIA
Sbjct: 61  CMMLLVHTRRKLESLEGFSKIASFGDLGFTVCGPIGRFAVDIMIVLAQAGFCVSYLIFIA 120

Query: 141 NTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSIPTLTHLAPLSIFADIVDLGA 200
           NTL +++N+ +  + ILGFLSPKALYIWGCFPFQLGLNSIPTLTHLAPLSIFAD+VDLGA
Sbjct: 121 NTLAYVVNHQSGDR-ILGFLSPKALYIWGCFPFQLGLNSIPTLTHLAPLSIFADVVDLGA 179

Query: 201 MGLVMVEDVMISMKQRPALKAFGDFSVFSYGIGVAVYAFEGVGMILPLESETRNKQRFGR 260
           MG+VMVEDVM+ +K RPAL+AFG FSVF YG+GVAVYAFEG+GM+LPLE+E ++K  FGR
Sbjct: 180 MGVVMVEDVMVFLKNRPALEAFGGFSVFFYGLGVAVYAFEGIGMVLPLETEAKHKDNFGR 239

Query: 261 ILGWCMAFISLLYGSFGALGYFAFGEETKDIITTNFGAGLVSTLVNVGLCVNLFLTFPLM 320
           +LG CMAFISLLYG FG LGYFAFGE+TKDIITTN G GL+S LV +GLCVNLF TFPLM
Sbjct: 240 VLGLCMAFISLLYGGFGVLGYFAFGEDTKDIITTNLGPGLLSNLVQIGLCVNLFFTFPLM 299

Query: 321 MNPVYEVVERRFCDYRYCLWLRWAVVLGVSLVALLVPNFADFLSLVGSSVCCILGFVLPA 380
           MNPVYEVVERRFCD RY +WLRW VVLGVSLVALLVPNFADFLSLVGSSVCCILGFVLPA
Sbjct: 300 MNPVYEVVERRFCDSRYSIWLRWVVVLGVSLVALLVPNFADFLSLVGSSVCCILGFVLPA 359

Query: 381 LFHLIVFKQELGWNGIVMDAALLVFGVVIGISGTWSSLMEI 421
           LFHL+VFK+ELGWNG+++D A +VFGV+I ++GTWSSLMEI
Sbjct: 360 LFHLLVFKEELGWNGLLLDGAFVVFGVIIAVTGTWSSLMEI 400

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225438450|ref|XP_002277064.1| PREDICTED: proton-coupled amino acid transporter 1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|255561435|ref|XP_002521728.1| amino acid transporter, putative [Ricinus communis] gi|223539119|gb|EEF40715.1| amino acid transporter, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|296082558|emb|CBI21563.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255572413|ref|XP_002527144.1| amino acid transporter, putative [Ricinus communis] gi|223533504|gb|EEF35246.1| amino acid transporter, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|147806138|emb|CAN70007.1| hypothetical protein VITISV_038750 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449444417|ref|XP_004139971.1| PREDICTED: proton-coupled amino acid transporter 3-like [Cucumis sativus] gi|449475703|ref|XP_004154528.1| PREDICTED: proton-coupled amino acid transporter 3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224102785|ref|XP_002312799.1| aromatic and neutral amino acid transporter [Populus trichocarpa] gi|222849207|gb|EEE86754.1| aromatic and neutral amino acid transporter [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224132448|ref|XP_002328275.1| aromatic and neutral amino acid transporter [Populus trichocarpa] gi|222837790|gb|EEE76155.1| aromatic and neutral amino acid transporter [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357484171|ref|XP_003612372.1| Proton-coupled amino acid transporter [Medicago truncatula] gi|355513707|gb|AES95330.1| Proton-coupled amino acid transporter [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query426
TAIR|locus:2121733436 AT4G38250 [Arabidopsis thalian 0.997 0.974 0.655 1.1e-149
TAIR|locus:504955913413 AT2G42005 "AT2G42005" [Arabido 0.929 0.958 0.657 6.6e-145
TAIR|locus:2156862427 AT5G65990 [Arabidopsis thalian 0.990 0.988 0.624 2.6e-143
TAIR|locus:2081471432 ANT1 "AT3G11900" [Arabidopsis 0.943 0.930 0.335 7.3e-59
UNIPROTKB|Q495N2470 SLC36A3 "Proton-coupled amino 0.723 0.655 0.270 1.1e-38
UNIPROTKB|I3LUT9476 SLC36A1 "Uncharacterized prote 0.718 0.642 0.287 4.5e-36
UNIPROTKB|E2RHF1476 SLC36A1 "Uncharacterized prote 0.713 0.638 0.279 6e-35
ZFIN|ZDB-GENE-061117-1468 slc36a1 "solute carrier family 0.899 0.818 0.279 1.4e-32
UNIPROTKB|F1P8V1485 SLC36A3 "Uncharacterized prote 0.704 0.618 0.265 2.2e-32
FB|FBgn0032036504 CG13384 [Drosophila melanogast 0.877 0.742 0.261 2.3e-32
TAIR|locus:2121733 AT4G38250 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1461 (519.4 bits), Expect = 1.1e-149, P = 1.1e-149
 Identities = 285/435 (65%), Positives = 341/435 (78%)

Query:     1 MGFDEEAGSSSYTLPVPPYPREDTPLLTKSKPLSTRSKTFANVFISIVGAGVLGLPYTFK 60
             MGF  EA SSSYTL +PP  RED+PLL K  PLS++ KTFANVFI++VGAGVLGLPY FK
Sbjct:     1 MGFQNEASSSSYTLKIPPPAREDSPLLGKGPPLSSQFKTFANVFIAVVGAGVLGLPYAFK 60

Query:    61 KTGWIMGLLMLFSVAALTYYCMMLLVHTRRKLETIH-GFSKINSFGDLGYTVCGSVGRVA 119
             +TGW+MG+L+L SV+ LT++CMMLLV+TRRKL++ + G SKI SFGDLG+ VCGS+GR+ 
Sbjct:    61 RTGWLMGVLLLVSVSVLTHHCMMLLVYTRRKLDSFNAGISKIGSFGDLGFAVCGSLGRIV 120

Query:   120 VDAMIVLAQAGFCVSYLIFIANTLTHMIN-NSTTSQ----TILG--FL--SPKALYIWGC 170
             VD  I+L+QAGFCV YLIFI  TL ++ +  S TS     T LG  FL  S K+LYIWGC
Sbjct:   121 VDLFIILSQAGFCVGYLIFIGTTLANLSDPESPTSLRHQFTRLGSEFLGVSSKSLYIWGC 180

Query:   171 FPFQLGLNSIPTLTHLAPLSIFADIVDLGAMGLVMVEDVMISMKQRPALKAFGDFSVFSY 230
             FPFQLGLNSI TLTHLAPLSIFADIVDLGAM +V+VED MI +KQRP + AFG  S+F Y
Sbjct:   181 FPFQLGLNSIKTLTHLAPLSIFADIVDLGAMAVVIVEDSMIILKQRPDVVAFGGMSLFLY 240

Query:   231 GIGVAVYAFEGVGMILPLESETRNKQRFGRILGWCMAFISLLYGSFGALGYFAFGEETKD 290
             G+GVAVY+FEGVGM+LPLESE ++K +FG++L   M FISL+Y +FG LGY AFGE+T D
Sbjct:   241 GMGVAVYSFEGVGMVLPLESEMKDKDKFGKVLALGMGFISLIYIAFGILGYLAFGEDTMD 300

Query:   291 IITTNFGAGLVSTLVNVGLCVNLFLTFPLMMNPVYEVVERRFCDYRYCLWLRWXXXXXXX 350
             IIT N GAGLVST+V +GLC+NLF TFPLMMNPV+E+VERRF    Y  WLRW       
Sbjct:   301 IITANLGAGLVSTVVQLGLCINLFFTFPLMMNPVFEIVERRFSRGMYSAWLRWVLVLAVT 360

Query:   351 XXXXXXPNFADFLSLVGSSVCCILGFVLPALFHLIVFKQELGWNGIVMDAALLVFGVVIG 410
                   PNFADFLSLVGSS CC+LGFVLPALFHL+VFK+E+GW     D A++V GVV+ 
Sbjct:   361 LVALFVPNFADFLSLVGSSTCCVLGFVLPALFHLLVFKEEMGWLQWSSDTAIVVLGVVLA 420

Query:   411 ISGTWSSLMEIVAPK 425
             +SGTWSSL EI + K
Sbjct:   421 VSGTWSSLSEIFSVK 435
GO:0005886 "plasma membrane" evidence=ISM
GO:0006865 "amino acid transport" evidence=ISS
GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS
GO:0016020 "membrane" evidence=ISS
GO:0006007 "glucose catabolic process" evidence=RCA
GO:0010193 "response to ozone" evidence=RCA
GO:0030244 "cellulose biosynthetic process" evidence=RCA
TAIR|locus:504955913 AT2G42005 "AT2G42005" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2156862 AT5G65990 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2081471 ANT1 "AT3G11900" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q495N2 SLC36A3 "Proton-coupled amino acid transporter 3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|I3LUT9 SLC36A1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E2RHF1 SLC36A1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-061117-1 slc36a1 "solute carrier family 36 (proton/amino acid symporter), member 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1P8V1 SLC36A3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
FB|FBgn0032036 CG13384 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query426
pfam01490406 pfam01490, Aa_trans, Transmembrane amino acid tran 1e-64
COG0814415 COG0814, SdaC, Amino acid permeases [Amino acid tr 8e-21
PTZ00206467 PTZ00206, PTZ00206, amino acid transporter; Provis 7e-09
>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein Back     alignment and domain information 
 Score =  212 bits (542), Expect = 1e-64
 Identities = 113/406 (27%), Positives = 199/406 (49%), Gaps = 30/406 (7%)

Query: 38  KTFANVFISIVGAGVLGLPYTFKKTGWIMGLLMLFSVAALTYYCMMLLVHTRRKLETIHG 97
           +   N+  +I+GAGVL LPY FK+ GWI GL++L  V  ++ Y + LLV   + ++ + G
Sbjct: 7   QAVFNLIKAIIGAGVLSLPYAFKQLGWIPGLILLVIVGLISLYTLHLLVQCSKYVDKVKG 66

Query: 98  FSKINSFGDLGYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTIL 157
             +  S+GDLGY + G  G++ +   I++   G C+SYLIF  + L  + ++   +  I 
Sbjct: 67  -KRRKSYGDLGYRLFGPKGKLLILFAILVNLFGVCISYLIFAGDNLPAIFDSFFDTCHI- 124

Query: 158 GFLSPKALYIWGCFPFQLGLNSIPTLTHLAPLSIFADIVDLGAMGLVMVEDVMISMKQRP 217
                   +I       + L+ IP L+ L+ LS+ A +  L  + LV+    +  +  + 
Sbjct: 125 ----SLVYFIIIFGLIFIPLSFIPNLSALSILSLVAAVSSLYIVILVLSVAELGVLTAQG 180

Query: 218 ----ALKAFGDFSVFSYGIGVAVYAFEGVGMILPLESETRNKQRFG---RILGWCMAFIS 270
                 K     +     IG+ V+AFEG  ++LP+++  ++  +F    ++L   +  ++
Sbjct: 181 VGSLGAKTNIKLARLFLAIGIIVFAFEGHAVLLPIQNTMKSPSKFKAMTKVLLTAIIIVT 240

Query: 271 LLYGSFGALGYFAFGEETKDIITTNFGAGLVST-LVNVGLCVNLFLTFPLMMNPVYEVVE 329
           +LY   G +GY AFG   K  I  N         + N+ L ++L L++PL   P+ ++VE
Sbjct: 241 VLYILVGLVGYLAFGNNVKGNILLNLPKSDWLIDIANLLLVLHLLLSYPLQAFPIRQIVE 300

Query: 330 RRFCDYRYC-----------LWLRWAVVLGVSLVALLVPNFADFLSLVGSSVCCILGFVL 378
                               + +R  +V+   L+A+ VP   DFLSLVG++    L F+L
Sbjct: 301 NLLFRKGASGKHNPKSKLLRVVIRSGLVVITYLIAISVPFLGDFLSLVGATSGAPLTFIL 360

Query: 379 PALFHLIVFKQELG-----WNGIVMDAALLVFGVVIGISGTWSSLM 419
           P LFHL + K +       W   ++D   +V G+++   G    ++
Sbjct: 361 PPLFHLKLKKTKKKSLEKLWKPDILDVICIVIGLLLMAYGVAGLII 406

This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406
>gnl|CDD|223884 COG0814, SdaC, Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|240313 PTZ00206, PTZ00206, amino acid transporter; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 426
KOG1304449 consensus Amino acid transporters [Amino acid tran 100.0
PTZ00206467 amino acid transporter; Provisional 100.0
KOG1303437 consensus Amino acid transporters [Amino acid tran 100.0
PF01490409 Aa_trans: Transmembrane amino acid transporter pro 100.0
PLN03074473 auxin influx permease; Provisional 100.0
KOG1305411 consensus Amino acid transporter protein [Amino ac 100.0
KOG4303524 consensus Vesicular inhibitory amino acid transpor 100.0
COG0814415 SdaC Amino acid permeases [Amino acid transport an 100.0
PRK10483414 tryptophan permease; Provisional 99.96
PF03222394 Trp_Tyr_perm: Tryptophan/tyrosine permease family; 99.96
PRK15132403 tyrosine transporter TyrP; Provisional 99.95
PRK09664415 tryptophan permease TnaB; Provisional 99.95
TIGR00837381 araaP aromatic amino acid transport protein. aroma 99.95
PRK13629443 threonine/serine transporter TdcC; Provisional 99.9
TIGR00814397 stp serine transporter. The HAAAP family includes 99.89
TIGR00912359 2A0309 spore germination protein (amino acid perme 99.76
PRK10655438 potE putrescine transporter; Provisional 99.76
TIGR03810468 arg_ornith_anti arginine/ornithine antiporter. Mem 99.74
TIGR00909429 2A0306 amino acid transporter. 99.74
PRK10435435 cadB lysine/cadaverine antiporter; Provisional 99.74
PRK15049499 L-asparagine permease; Provisional 99.73
PRK11021410 putative transporter; Provisional 99.72
TIGR00905473 2A0302 transporter, basic amino acid/polyamine ant 99.72
PRK10249458 phenylalanine transporter; Provisional 99.72
PRK10644445 arginine:agmatin antiporter; Provisional 99.71
PRK11387471 S-methylmethionine transporter; Provisional 99.7
PRK10746461 putative transport protein YifK; Provisional 99.7
PRK11049469 D-alanine/D-serine/glycine permease; Provisional 99.7
KOG1287479 consensus Amino acid transporters [Amino acid tran 99.7
TIGR01773452 GABAperm gamma-aminobutyrate permease. GabP is hig 99.7
COG1113462 AnsP Gamma-aminobutyrate permease and related perm 99.69
TIGR00906 557 2A0303 cationic amino acid transport permease. 99.68
PRK10238456 aromatic amino acid transporter; Provisional 99.66
PRK10836489 lysine transporter; Provisional 99.65
TIGR00913478 2A0310 amino acid permease (yeast). 99.64
PRK10580457 proY putative proline-specific permease; Provision 99.64
TIGR00930 953 2a30 K-Cl cotransporter. 99.63
TIGR00908442 2A0305 ethanolamine permease. The three genes used 99.63
PF13520426 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G 99.63
TIGR00911501 2A0308 L-type amino acid transporter. 99.62
PRK11357445 frlA putative fructoselysine transporter; Provisio 99.6
PRK10197446 gamma-aminobutyrate transporter; Provisional 99.6
PF03845320 Spore_permease: Spore germination protein; InterPr 99.59
COG0833541 LysP Amino acid transporters [Amino acid transport 99.56
COG0531466 PotE Amino acid transporters [Amino acid transport 99.48
KOG1286554 consensus Amino acid transporters [Amino acid tran 99.47
TIGR03428475 ureacarb_perm permease, urea carboxylase system. A 99.35
TIGR00907482 2A0304 amino acid permease (GABA permease). 99.34
PRK15238496 inner membrane transporter YjeM; Provisional 99.26
KOG3832319 consensus Predicted amino acid transporter [Genera 99.26
PF00324478 AA_permease: Amino acid permease; InterPro: IPR004 99.26
TIGR03813474 put_Glu_GABA_T putative glutamate/gamma-aminobutyr 99.25
TIGR00910 507 2A0307_GadC glutamate:gamma-aminobutyrate antiport 99.21
COG3949349 Uncharacterized membrane protein [Function unknown 98.9
KOG1289550 consensus Amino acid transporters [Amino acid tran 98.72
COG1457442 CodB Purine-cytosine permease and related proteins 98.58
TIGR02358386 thia_cytX probable hydroxymethylpyrimidine transpo 98.56
TIGR00800442 ncs1 NCS1 nucleoside transporter family. The NCS1 98.56
PRK11375484 allantoin permease; Provisional 98.5
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 98.34
PF00474406 SSF: Sodium:solute symporter family; InterPro: IPR 98.28
PRK11017404 codB cytosine permease; Provisional 98.24
PRK12488 549 acetate permease; Provisional 98.18
TIGR02119471 panF sodium/pantothenate symporter. Pantothenate ( 98.17
TIGR02711 549 symport_actP cation/acetate symporter ActP. Member 98.15
PRK09442483 panF sodium/panthothenate symporter; Provisional 98.11
TIGR00813407 sss transporter, SSS family. have different number 98.05
PF02133440 Transp_cyt_pur: Permease for cytosine/purines, ura 97.96
TIGR00835425 agcS amino acid carrier protein. Members of the AG 97.92
PRK09395 551 actP acetate permease; Provisional 97.91
COG0591493 PutP Na+/proline symporter [Amino acid transport a 97.76
COG4147529 DhlC Predicted symporter [General function predict 97.71
KOG1288 945 consensus Amino acid transporters [Amino acid tran 97.71
TIGR03648 552 Na_symport_lg probable sodium:solute symporter, VC 97.61
COG1953497 FUI1 Cytosine/uracil/thiamine/allantoin permeases 97.56
PRK00701439 manganese transport protein MntH; Reviewed 97.53
PF02554376 CstA: Carbon starvation protein CstA; InterPro: IP 97.52
COG1914416 MntH Mn2+ and Fe2+ transporters of the NRAMP famil 97.49
TIGR02121487 Na_Pro_sym sodium/proline symporter. This family c 97.47
PRK15419502 proline:sodium symporter PutP; Provisional 97.38
COG0733439 Na+-dependent transporters of the SNF family [Gene 97.27
KOG2083 643 consensus Na+/K+ symporter [Inorganic ion transpor 96.87
PF01566358 Nramp: Natural resistance-associated macrophage pr 96.62
PF01235416 Na_Ala_symp: Sodium:alanine symporter family; Inte 96.57
PRK10484523 putative transporter; Provisional 96.56
PF00209523 SNF: Sodium:neurotransmitter symporter family; Int 96.36
PRK15015 701 carbon starvation protein A; Provisional 96.34
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 95.6
COG1966 575 CstA Carbon starvation protein, predicted membrane 95.52
KOG2082 1075 consensus K+/Cl- cotransporter KCC1 and related tr 94.8
COG1115452 AlsT Na+/alanine symporter [Amino acid transport a 92.71
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 92.66
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 92.63
KOG2349 585 consensus Na+:iodide/myo-inositol/multivitamin sym 90.21
COG1114431 BrnQ Branched-chain amino acid permeases [Amino ac 89.34
TIGR01197390 nramp NRAMP (natural resistance-associated macroph 87.05
PF02028485 BCCT: BCCT family transporter; InterPro: IPR000060 86.29
PRK15433439 branched-chain amino acid transport system 2 carri 81.63
KOG2466 572 consensus Uridine permease/thiamine transporter/al 81.61
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=3.5e-56  Score=416.89  Aligned_cols=384  Identities=34%  Similarity=0.557  Sum_probs=346.9

Q ss_pred             CCCCCChHHHHHHHHHHhhhhhhchhhHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCccccccchh-
Q 014330           30 SKPLSTRSKTFANVFISIVGAGVLGLPYTFKKTGWIMGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKINSFGDLG-  108 (426)
Q Consensus        30 ~~~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~y~~l~-  108 (426)
                      .++..|..++..|+.+.++|+|+|++|+||+++||+.|.+..++.+.++.|+++.+++|.+++.++.+.+. .+|+|.+ 
T Consensus        43 ~~~~~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~-~~y~~~~~  121 (449)
T KOG1304|consen   43 REHPTSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPS-LDYAETAE  121 (449)
T ss_pred             CCCCCchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCcc-ccHHHHHH
Confidence            45679999999999999999999999999999999999999999999999999999999999987654443 5555554 


Q ss_pred             ---------HHhhchhhhHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCcccccccccchhHHHHHHhHHHhhhcc
Q 014330          109 ---------YTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNS  179 (426)
Q Consensus       109 ---------~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~  179 (426)
                               .+.+|+++|.+++..+.++++|.|+.|++.++++++++.+.....      ..+...++++.++..+++++
T Consensus       122 ~a~~~~~~~~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~~~~------~~s~~~~i~~~~~~~lll~~  195 (449)
T KOG1304|consen  122 SAMEGGPGWLRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEHSPG------VLSVRLYILIQLPPLLLLNL  195 (449)
T ss_pred             HHHcCCcHHHHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhccCCC------CccHHHHHHHHHHHHHHHHH
Confidence                     455688999999999999999999999999999999999843322      36678999999999999999


Q ss_pred             ccccCccchHHHHHHHHHHHHhheeeeechhhhhccCccccccccchhhhHHHHHHHhhhccceeeccccccCcchhhHH
Q 014330          180 IPTLTHLAPLSIFADIVDLGAMGLVMVEDVMISMKQRPALKAFGDFSVFSYGIGVAVYAFEGVGMILPLESETRNKQRFG  259 (426)
Q Consensus       180 ~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~~  259 (426)
                      +|++|.++.+|.++.++++..++++.++...+.. +.++...+.++++++..+|+.+|||.|+.++.|++++||+|++++
T Consensus       196 Ir~Lk~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~-~~~~~~~~~~~~~~~lf~GtaifafEGig~VLPlEn~Mk~P~~F~  274 (449)
T KOG1304|consen  196 IRNLKILSPFSLFANVFILVGLAIIMYYLVQDLP-PTSDLPAVTGWSGLPLFFGTAIFAFEGIGMVLPLENSMKKPQKFP  274 (449)
T ss_pred             HHhhHHhhHHHHHHHHHHHHHHHHHHHHHHhccC-CccccccccchhhhHHHHHHHHHHhccceEEEehhhcccChhhcC
Confidence            9999999999999999999999999988877544 444555566789999999999999999999999999999999999


Q ss_pred             ---hHHHHHHHHHHHHHHHHhhhhhhccccccccceeccccCChhhHHHHHHHHHHHHhhccccccchHHHHHHhhcC--
Q 014330          260 ---RILGWCMAFISLLYGSFGALGYFAFGEETKDIITTNFGAGLVSTLVNVGLCVNLFLTFPLMMNPVYEVVERRFCD--  334 (426)
Q Consensus       260 ---~~~~~~~~~~~~~Y~~~~~~gy~~fG~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~s~pl~~~~~~~~l~~~~~~--  334 (426)
                         .++..++.+++++|..+|++||+.||+++++.++.|+|+++....+++++++.++.+||++++|..+.+|+.+++  
T Consensus       275 g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP~~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~~~i~~k~  354 (449)
T KOG1304|consen  275 GPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLPQEILSQTVKLLLAIAIFLTYPLQFYVPIEIIEPGIRKKF  354 (449)
T ss_pred             CccchHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCCccHHHHHHHHHHHHHHHHcCchhhhhhHHHHHHhHHHhc
Confidence               999999999999999999999999999999999999999999999999999999999999999999999997643  


Q ss_pred             --cc---hhhHHHHHHHHHHHHHhhccCCcchhhhhcchhhhhhHHHHhhhHHHHhhhccc---CchhHHhhhHHHHHHH
Q 014330          335 --YR---YCLWLRWAVVLGVSLVALLVPNFADFLSLVGSSVCCILGFVLPALFHLIVFKQE---LGWNGIVMDAALLVFG  406 (426)
Q Consensus       335 --~~---~~~~~~~~~~~~~~~va~~~p~~~~i~~~~G~~~~~~~~~ilP~l~~~~~~~~~---~~~~~~~~~~~~~~~g  406 (426)
                        +|   ...+.|+.+++++..+|..+||++..++++|+++++.+.+++|++++++..+++   +.+|+.+.+.+++++|
T Consensus       355 ~~~~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLVGs~~~s~L~li~P~liel~~~~~~~~~~~~~~~~~ni~l~~~G  434 (449)
T KOG1304|consen  355 SENRKKLLEYALRVFLVLLTFLIAVAVPNLALFISLVGSVSCSLLALIFPPLIELITFYPEGKGRFMWKLIKNIVLIVFG  434 (449)
T ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHHHHHHHHHHHHccHHHHHHHhcccccCceehHHHHHHHHHHHH
Confidence              22   234589999999999999999999999999999999999999999999998754   3467888999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 014330          407 VVIGISGTWSSLMEI  421 (426)
Q Consensus       407 ~~~~~~g~~~si~~~  421 (426)
                      ++.++.|||.++.|+
T Consensus       435 ~~~~v~Gty~si~~i  449 (449)
T KOG1304|consen  435 VFGFVYGTYTSIKEI  449 (449)
T ss_pred             HHHHHHHHhhhhhcC
Confidence            999999999999874

>PTZ00206 amino acid transporter; Provisional Back     alignment and domain information
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR) Back     alignment and domain information
>PLN03074 auxin influx permease; Provisional Back     alignment and domain information
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism] Back     alignment and domain information
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PRK10483 tryptophan permease; Provisional Back     alignment and domain information
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PRK15132 tyrosine transporter TyrP; Provisional Back     alignment and domain information
>PRK09664 tryptophan permease TnaB; Provisional Back     alignment and domain information
>TIGR00837 araaP aromatic amino acid transport protein Back     alignment and domain information
>PRK13629 threonine/serine transporter TdcC; Provisional Back     alignment and domain information
>TIGR00814 stp serine transporter Back     alignment and domain information
>TIGR00912 2A0309 spore germination protein (amino acid permease) Back     alignment and domain information
>PRK10655 potE putrescine transporter; Provisional Back     alignment and domain information
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter Back     alignment and domain information
>TIGR00909 2A0306 amino acid transporter Back     alignment and domain information
>PRK10435 cadB lysine/cadaverine antiporter; Provisional Back     alignment and domain information
>PRK15049 L-asparagine permease; Provisional Back     alignment and domain information
>PRK11021 putative transporter; Provisional Back     alignment and domain information
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>PRK10249 phenylalanine transporter; Provisional Back     alignment and domain information
>PRK10644 arginine:agmatin antiporter; Provisional Back     alignment and domain information
>PRK11387 S-methylmethionine transporter; Provisional Back     alignment and domain information
>PRK10746 putative transport protein YifK; Provisional Back     alignment and domain information
>PRK11049 D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR01773 GABAperm gamma-aminobutyrate permease Back     alignment and domain information
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00906 2A0303 cationic amino acid transport permease Back     alignment and domain information
>PRK10238 aromatic amino acid transporter; Provisional Back     alignment and domain information
>PRK10836 lysine transporter; Provisional Back     alignment and domain information
>TIGR00913 2A0310 amino acid permease (yeast) Back     alignment and domain information
>PRK10580 proY putative proline-specific permease; Provisional Back     alignment and domain information
>TIGR00930 2a30 K-Cl cotransporter Back     alignment and domain information
>TIGR00908 2A0305 ethanolamine permease Back     alignment and domain information
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A Back     alignment and domain information
>TIGR00911 2A0308 L-type amino acid transporter Back     alignment and domain information
>PRK11357 frlA putative fructoselysine transporter; Provisional Back     alignment and domain information
>PRK10197 gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR03428 ureacarb_perm permease, urea carboxylase system Back     alignment and domain information
>TIGR00907 2A0304 amino acid permease (GABA permease) Back     alignment and domain information
>PRK15238 inner membrane transporter YjeM; Provisional Back     alignment and domain information
>KOG3832 consensus Predicted amino acid transporter [General function prediction only] Back     alignment and domain information
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>COG3949 Uncharacterized membrane protein [Function unknown] Back     alignment and domain information
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] Back     alignment and domain information
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX Back     alignment and domain information
>TIGR00800 ncs1 NCS1 nucleoside transporter family Back     alignment and domain information
>PRK11375 allantoin permease; Provisional Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells Back     alignment and domain information
>PRK11017 codB cytosine permease; Provisional Back     alignment and domain information
>PRK12488 acetate permease; Provisional Back     alignment and domain information
>TIGR02119 panF sodium/pantothenate symporter Back     alignment and domain information
>TIGR02711 symport_actP cation/acetate symporter ActP Back     alignment and domain information
>PRK09442 panF sodium/panthothenate symporter; Provisional Back     alignment and domain information
>TIGR00813 sss transporter, SSS family Back     alignment and domain information
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines Back     alignment and domain information
>TIGR00835 agcS amino acid carrier protein Back     alignment and domain information
>PRK09395 actP acetate permease; Provisional Back     alignment and domain information
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>COG4147 DhlC Predicted symporter [General function prediction only] Back     alignment and domain information
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily Back     alignment and domain information
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>PRK00701 manganese transport protein MntH; Reviewed Back     alignment and domain information
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex Back     alignment and domain information
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR02121 Na_Pro_sym sodium/proline symporter Back     alignment and domain information
>PRK15419 proline:sodium symporter PutP; Provisional Back     alignment and domain information
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only] Back     alignment and domain information
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2 Back     alignment and domain information
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups Back     alignment and domain information
>PRK10484 putative transporter; Provisional Back     alignment and domain information
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses Back     alignment and domain information
>PRK15015 carbon starvation protein A; Provisional Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism] Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters Back     alignment and domain information
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query426
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 99.83
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 99.74
4djk_A511 Probable glutamate/gamma-aminobutyrate antiporter; 99.6
2jln_A501 MHP1; hydantoin, transporter, membrane protein, nu 98.93
3dh4_A 530 Sodium/glucose cotransporter; membrane protein, sy 98.18
2xq2_A 593 Sodium/glucose cotransporter; transport protein, i 97.67
2a65_A519 Leutaa, Na(+):neurotransmitter symporter (SNF fami 97.5
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Back     alignment and structure
Probab=99.83  E-value=2.3e-18  Score=169.20  Aligned_cols=346  Identities=10%  Similarity=-0.015  Sum_probs=221.8

Q ss_pred             CCCCCCChHHHHHHHHHHhhhhhhchhhHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCccccccchh
Q 014330           29 KSKPLSTRSKTFANVFISIVGAGVLGLPYTFKKTGWIMGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKINSFGDLG  108 (426)
Q Consensus        29 ~~~~~~s~~~~~~~l~~~~iG~GiL~LP~a~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~y~~l~  108 (426)
                      +++++.+.++..+..+++++|+|++.+|...++.|.. +++..++.++........+.|..++.      |+.....+..
T Consensus         5 ~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~~-~~~~~li~~~~~~~~a~~~~el~~~~------p~~Gg~y~~~   77 (445)
T 3l1l_A            5 ADAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGGI-AIYGWLVTIIGALGLSMVYAKMSFLD------PSPGGSYAYA   77 (445)
T ss_dssp             --CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCTH-HHHHHHHHHHHHHHHHHHHHHHHHHC------CCTTTHHHHH
T ss_pred             CCCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHccC------CCCCCchhhH
Confidence            4568899999999999999999999999988888864 78888888999988888888887774      5555677778


Q ss_pred             HHhhchhhhHHHHHHHHHHHhhhhHHHHHHHHhhhhhhcccCCCcccccccccchhHHHHHHhHHHhhhccccccCccch
Q 014330          109 YTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTLTHMINNSTTSQTILGFLSPKALYIWGCFPFQLGLNSIPTLTHLAP  188 (426)
Q Consensus       109 ~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~~~~  188 (426)
                      ++.+||+.+++..+..++.......++....++.++.+++...++       .....+.. ...+.......++.|...+
T Consensus        78 ~~~~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~-~~~~~~~~in~~g~~~~~~  149 (445)
T 3l1l_A           78 RRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDP-------WVLTITCV-VVLWIFVLLNIVGPKMITR  149 (445)
T ss_dssp             HHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGGSH-------HHHHHHHH-HHHHHHHHHHHHCHHHHHH
T ss_pred             HhHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcccccc-------HHHHHHHH-HHHHHHHHHHHhchHHHHH
Confidence            999999999999999999888888888888888888776642211       11122222 2222222334567777777


Q ss_pred             HHHHHHHHHHHHhheeeeechhhhh-cc-Cccccc--cccchhhhHHHHHHHhhhccceeeccccccCcch-hhHHhHHH
Q 014330          189 LSIFADIVDLGAMGLVMVEDVMISM-KQ-RPALKA--FGDFSVFSYGIGVAVYAFEGVGMILPLESETRNK-QRFGRILG  263 (426)
Q Consensus       189 ~s~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~--~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~-~~~~~~~~  263 (426)
                      ++.+.....+...+.+......... .. .++..+  ..++.++..++....|+|.|.+......+|+||| |+.+|++.
T Consensus       150 ~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~ip~a~~  229 (445)
T 3l1l_A          150 VQAVATVLALIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATI  229 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSTTCCCCCCCCC-----------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhChhhcccccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccccccHHHH
Confidence            7766555444333322221111100 00 011111  1135578899999999999999999999999998 55999999


Q ss_pred             HHHHHHHHHHHHHhhhhhhccccccccc----e---eccccCChhhHHHHHHHHHHHHhhccccccchHHHHHHhhcCc-
Q 014330          264 WCMAFISLLYGSFGALGYFAFGEETKDI----I---TTNFGAGLVSTLVNVGLCVNLFLTFPLMMNPVYEVVERRFCDY-  335 (426)
Q Consensus       264 ~~~~~~~~~Y~~~~~~gy~~fG~~~~~~----i---~~~~~~~~~~~~~~i~~~~~~~~s~pl~~~~~~~~l~~~~~~~-  335 (426)
                      .+..++.++|.+.........+.+...+    .   ..+...++...+..+...+..+.+.-...+...+.+...-+++ 
T Consensus       230 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~dg~  309 (445)
T 3l1l_A          230 GGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGL  309 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            9999999999999888777665443211    1   1111123444555666666666665555555666555444321 


Q ss_pred             ---------c--hhhHHHHHHHHHHHHHhhc--c----CCcchhhhhcchhhhhhHHHHhhhHHHHhhhcccC
Q 014330          336 ---------R--YCLWLRWAVVLGVSLVALL--V----PNFADFLSLVGSSVCCILGFVLPALFHLIVFKQEL  391 (426)
Q Consensus       336 ---------~--~~~~~~~~~~~~~~~va~~--~----p~~~~i~~~~G~~~~~~~~~ilP~l~~~~~~~~~~  391 (426)
                               |  .+.........++.++...  .    +.++.+.++.+  ....+.|.++++.+++.+|++.
T Consensus       310 lP~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~y~~~~~~~~~~r~~~~  380 (445)
T 3l1l_A          310 FPPIFARVNKAGTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSV--IFTLVPYLYTCAALLLLGHGHF  380 (445)
T ss_dssp             SCGGGGCCCTTCCCHHHHHHHHHHHHHHHHSTTSHHHHCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHSSSS
T ss_pred             CcHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCc
Confidence                     1  1111111111222222222  2    23556666533  4557889999999999987654
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Back     alignment and structure
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Back     alignment and structure
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A Back     alignment and structure
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} Back     alignment and structure
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A Back     alignment and structure
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query426
d2a65a1 509 Na(+):neurotransmitter symporter homologue LeuT {A 97.21
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.21  E-value=0.091  Score=49.34  Aligned_cols=104  Identities=12%  Similarity=0.030  Sum_probs=57.7

Q ss_pred             CCChHHHHHHHHHHhhhhhhc-hhhHHHhhhcHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCccccccch
Q 014330           33 LSTRSKTFANVFISIVGAGVL-GLPYTFKKTGWI----MGLLMLFSVAALTYYCMMLLVHTRRKLETIHGFSKINSFGDL  107 (426)
Q Consensus        33 ~~s~~~~~~~l~~~~iG~GiL-~LP~a~~~~G~~----~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~y~~l  107 (426)
                      =.|..+-+...++..+|.|=+ -.||...+.|-.    +-.+.+++.+.=..+--..+.+..++       +....+..+
T Consensus         4 W~s~~~fila~~g~avGlGNiWrFPyl~~~nGGgaFlipY~~~l~l~gvPll~lE~~lGq~~~~-------g~i~~~~~i   76 (509)
T d2a65a1           4 WATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGA-------QGHGTTPAI   76 (509)
T ss_dssp             CSCHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-------TTCCSHHHH
T ss_pred             CCChHHHHHHHHHHHhcccHHHhhhHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHcCCCCC-------CcccHHHHH
Confidence            367888999999999999854 489987776533    23333333333333333333333222       455666666


Q ss_pred             hHHhhchhhhHHHHHHHHHHHhhhhHHHHHHHHhhh
Q 014330          108 GYTVCGSVGRVAVDAMIVLAQAGFCVSYLIFIANTL  143 (426)
Q Consensus       108 ~~~~~G~~~~~~~~~~~~~~~~g~~~~y~~~~~~~l  143 (426)
                      .....+++....+.....+..+..++-|.+..+-.+
T Consensus        77 ~~~~~~~~~~~giG~~~~~~~~~i~~yy~vi~~w~l  112 (509)
T d2a65a1          77 FYLLWRNRFAKILGVFGLWIPLVVAIYYVYIESWTL  112 (509)
T ss_dssp             HHHHSCSHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhccCcchhHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            666555444344444444444445555555555443