Citrus Sinensis ID: 014342

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420------
Protein Sequence
MYNSGLNTGHENSGVVGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSGNMEVDDVVMRPEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQVIARFLQNMLYA
Secondary Structure (PSIPRED)
ccccccccccccccccccccEEEEEEEcccccEEEEEEcccccccccccccccccccEEEEEEEccccEEEEEEEEccEEEEcccccEEEcccccEEEEEEccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccEEEEccHHHHHHHHHHHHHccccEEEEEccccccEEccccHHHHHHHHHHHccccccccHHHHHcccHHHHHHHHEEEcccccccccccccccccEEEcccccHHHHHHHHHHcccEEEEEEcccccccccccEEEEEEHHHHHHHHHHHccccccccccccccccccEEEEccccccccccccEEEEcccccHHHHHHHHHHcccEEEEEEcccccEEEEEEHHHHHHHHHcccccccccccccHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccEEEEEEEEEEEEcccccEEEEEEcccccccccccccccccccEEEEEEEcccccEEEEEEEccEEEccccccccccccccEEEEEEEcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccEEEcccccEEEEEEccHHHHHHHHHHHHcccEEccccccccccEEEEEEHHHHHHHHHHHHcccccccHHHHHHccHHHHHHHHHHHccHHHHHHHcccccccEEEEcccHHHHHHHHHHHHHccccccEEcccccccccccEEEEEcHHHHHHHHHHHHHHHccccHHHcccHHHcccccEccccccccccccEEEccccHHHHHHHHHHHHcccEcEEEccccEEEEHHHHHHHHHHHHccccccccccHHHHHHHHHccccEEEEc
Coil and Loop (DISEMBL)
mynsglntghensgvvgsilvpvrfiwpnggrrvslsgsftrwsepmpmspsegcpavfqiicrlppghhqykfyvdgewrhdenqphvsgnygvVNCVYIavpqpdmvpntispetsgnmevddvvmrpegfaqySEADLQLSRDRISSFLSTHTVYEllpdsgkvtaLDVNLAVKQAFHVLYeqglpmvplwddfkgRFVGVLSALDFILILRElgtngsnlteeeLETHTISAWKVGKLQLNLKrqmdgngrpcprplvqagpydsLKEVALKILQnkvatvpiihstgpagscqEILYLASLSDILKCICRhfkhsssslpilqqpvssiqlgtwvprigeangrpfamlrPTASLGSALALLVQadvssipivddndslldiysrsDITALAKDKAYAQIHLDEMNIHQVIARFLQNMLYA
Flexible Loop (DISEMBL)
mynsglntghensgvvGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSGNMEVDDVVMRPEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSsipivddndslLDIYSRSDITALAKDKAYAQIHLDEMNIHQVIARFLQNMLYA
Low Complexity Region (SEG)
MYNSGLNTGHENSGVVGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSGNMEVDDVVMRPEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQVIARFLQNMLYA
Disordered region (IsUnstruct)
*************GVVGSILVPVRFIWPNGGRRVSLSGSFTRW**********GCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQ***************************FAQY**ADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKR**********RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQVIARFLQNML**
Disordered Region (DISOPRED)
********************VPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSGNMEVDDVVMRPEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQVIARFLQNMLYA
Disordered Region (DISEMBL)
*********HENSGVVGSILVPVRFIWPNGGRRVSLSGSFTRW*********EGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSGNMEVDDVVMRPEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQVIARFLQNMLYA
Disordered Region (DISPRO)
************SGVVGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSGNMEVDDVVMRPEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQVIARFLQNMLYA
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYNSGLNTGHENSGVVGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSGNMEVDDVVMRPEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQVIARFLQNMLYA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	426	2.2.26 [Sep-21-2011]
Q944A6	487	Sucrose nonfermenting 4-l	yes	no	0.967	0.845	0.702	1e-170
P54619	331	5'-AMP-activated protein	yes	no	0.528	0.679	0.329	2e-26
P58108	330	5'-AMP-activated protein	yes	no	0.530	0.684	0.322	2e-26
O54950	330	5'-AMP-activated protein	yes	no	0.530	0.684	0.322	2e-26
Q09138	330	5'-AMP-activated protein	yes	no	0.528	0.681	0.329	2e-26
P80385	330	5'-AMP-activated protein	yes	no	0.530	0.684	0.318	3e-26
Q9UGJ0	569	5'-AMP-activated protein	no	no	0.577	0.432	0.273	1e-23
Q5R4S0	524	5'-AMP-activated protein	no	no	0.577	0.469	0.273	1e-23
Q91WG5	566	5'-AMP-activated protein	no	no	0.577	0.434	0.273	1e-23
Q9MYP4	514	5'-AMP-activated protein	no	no	0.539	0.447	0.295	1e-22

>sp|Q944A6|SNF4_ARATH Sucrose nonfermenting 4-like protein OS=Arabidopsis thaliana GN=SNF4 PE=1 SV=1

 Score =  599 bits (1544), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 297/423 (70%), Positives = 344/423 (81%), Gaps = 11/423 (2%)

Query: 1   MYNSGLNTGHENSGVVGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQ 60
           M+ S L++   NS   G +L P RF+WP GGRRV LSGSFTRW+E +PMSP EGCP VFQ
Sbjct: 1   MFGSTLDSSRGNSAASGQLLTPTRFVWPYGGRRVFLSGSFTRWTEHVPMSPLEGCPTVFQ 60

Query: 61  IICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSG- 119
           +IC L PG+HQYKF+VDGEWRHDE+QP VSGN GVVN ++I    PDMVP   SPET G 
Sbjct: 61  VICNLTPGYHQYKFFVDGEWRHDEHQPFVSGNGGVVNTIFIT--GPDMVPAGFSPETLGR 118

Query: 120 -NMEVDDVVMRP-----EGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVN 173
            NM+VDDV +R      E   + S  DL+LSR RIS  LST T YELLP+SGKV ALDVN
Sbjct: 119 SNMDVDDVFLRTADPSQEAVPRMSGVDLELSRHRISVLLSTRTAYELLPESGKVIALDVN 178

Query: 174 LAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHT 233
           L VKQAFH+LYEQG+P+ PLWD  KG+FVGVL  LDFILILRELGT+GSNLTEEELETHT
Sbjct: 179 LPVKQAFHILYEQGIPLAPLWDFGKGQFVGVLGPLDFILILRELGTHGSNLTEEELETHT 238

Query: 234 ISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGP 293
           I+AWK GK  ++  RQ DG+GRP PRPLVQ GPYD+LK+VALKILQNKVA VP+I+S+  
Sbjct: 239 IAAWKEGKAHIS--RQYDGSGRPYPRPLVQVGPYDNLKDVALKILQNKVAAVPVIYSSLQ 296

Query: 294 AGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAM 353
            GS  ++L+LASLS ILKCICR+F+HSSSSLPILQQP+ SI LGTWVPRIGE++ +P A 
Sbjct: 297 DGSYPQLLHLASLSGILKCICRYFRHSSSSLPILQQPICSIPLGTWVPRIGESSSKPLAT 356

Query: 354 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIH 413
           LRP ASLGSALALLVQA+VSSIP+VDDNDSL+DIYSRSDITALAKDKAYAQIHLD+M +H
Sbjct: 357 LRPHASLGSALALLVQAEVSSIPVVDDNDSLIDIYSRSDITALAKDKAYAQIHLDDMTVH 416

Query: 414 QVI 416
           Q +
Sbjct: 417 QAL 419

Regulatory subunit of the probable trimeric SNF1-related protein kinase (SnRK) complex, which may play a role in a signal transduction cascade regulating gene expression and carbohydrate metabolism in higher plants.
Arabidopsis thaliana (taxid: 3702)

>sp|P54619|AAKG1_HUMAN 5'-AMP-activated protein kinase subunit gamma-1 OS=Homo sapiens GN=PRKAG1 PE=1 SV=1

 Score =  120 bits (302), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/255 (32%), Positives = 126/255 (49%), Gaps = 30/255 (11%)

Query: 149 SSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSAL 208
           +SF+ +H  Y+L+P S K+   D +L VK+AF  L   G+   PLWD  K  FVG+L+  
Sbjct: 30  TSFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTIT 89

Query: 209 DFILILRELGTNGSNLTE-EELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPY 267
           DFI IL       S L +  ELE H I  W+   LQ + K            PLV   P 
Sbjct: 90  DFINILHRYY--KSALVQIYELEEHKIETWREVYLQDSFK------------PLVCISPN 135

Query: 268 DSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPIL 327
            SL +    +++NK+  +P+I     +G+   IL    +   LK     F         +
Sbjct: 136 ASLFDAVSSLIRNKIHRLPVIDP--ESGNTLYILTHKRILKFLKLFITEFPKPE----FM 189

Query: 328 QQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDI 387
            + +  +Q+GT+      AN    AM+R T  +  AL + VQ  VS++P+VD+   ++DI
Sbjct: 190 SKSLEELQIGTY------AN---IAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDI 240

Query: 388 YSRSDITALAKDKAY 402
           YS+ D+  LA +K Y
Sbjct: 241 YSKFDVINLAAEKTY 255

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Homo sapiens (taxid: 9606)

>sp|P58108|AAKG1_BOVIN 5'-AMP-activated protein kinase subunit gamma-1 OS=Bos taurus GN=PRKAG1 PE=2 SV=2

 Score =  120 bits (301), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 82/254 (32%), Positives = 125/254 (49%), Gaps = 28/254 (11%)

Query: 149 SSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSAL 208
           +SF+ +H  Y+L+P S K+   D +L VK+AF  L   G+   PLWD  K  FVG+L+  
Sbjct: 30  TSFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTIT 89

Query: 209 DFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYD 268
           DFI IL       + +   ELE H I  W+   LQ + K            PLV   P  
Sbjct: 90  DFINILHRY-YKSALVQIYELEEHKIETWREVYLQDSFK------------PLVCISPNA 136

Query: 269 SLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQ 328
           SL +    +++NK+  +P+I     +G+   IL    +   LK     F         + 
Sbjct: 137 SLFDAVSSLIRNKIHRLPVI--DPESGNTLYILTHKRILKFLKLFITEFPKPE----FMS 190

Query: 329 QPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIY 388
           + +  +Q+GT+      AN    AM+R T  +  AL + VQ  VS++P+VD+   ++DIY
Sbjct: 191 KSLEELQIGTY------AN---IAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIY 241

Query: 389 SRSDITALAKDKAY 402
           S+ D+  LA +K Y
Sbjct: 242 SKFDVINLAAEKTY 255

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Bos taurus (taxid: 9913)

>sp|O54950|AAKG1_MOUSE 5'-AMP-activated protein kinase subunit gamma-1 OS=Mus musculus GN=Prkag1 PE=1 SV=2

 Score =  120 bits (301), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 82/254 (32%), Positives = 125/254 (49%), Gaps = 28/254 (11%)

Query: 149 SSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSAL 208
           +SF+ +H  Y+L+P S K+   D +L VK+AF  L   G+   PLWD  K  FVG+L+  
Sbjct: 29  TSFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTIT 88

Query: 209 DFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYD 268
           DFI IL       + +   ELE H I  W+   LQ + K            PLV   P  
Sbjct: 89  DFINILHRY-YKSALVQIYELEEHKIETWREVYLQDSFK------------PLVCISPNA 135

Query: 269 SLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQ 328
           SL +    +++NK+  +P+I     +G+   IL    +   LK     F         + 
Sbjct: 136 SLFDAVSSLIRNKIHRLPVI--DPESGNTLYILTHKRILKFLKLFITEFPKPE----FMS 189

Query: 329 QPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIY 388
           + +  +Q+GT+      AN    AM+R T  +  AL + VQ  VS++P+VD+   ++DIY
Sbjct: 190 KSLQELQIGTY------AN---IAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIY 240

Query: 389 SRSDITALAKDKAY 402
           S+ D+  LA +K Y
Sbjct: 241 SKFDVINLAAEKTY 254

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Mus musculus (taxid: 10090)

>sp|Q09138|AAKG1_PIG 5'-AMP-activated protein kinase subunit gamma-1 OS=Sus scrofa GN=PRKAG1 PE=1 SV=2

 Score =  120 bits (301), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/255 (32%), Positives = 126/255 (49%), Gaps = 30/255 (11%)

Query: 149 SSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSAL 208
           +SF+ +H  Y+L+P S K+   D +L VK+AF  L   G+   PLWD  K  FVG+L+  
Sbjct: 30  TSFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTIT 89

Query: 209 DFILILRELGTNGSNLTE-EELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPY 267
           DFI IL       S L +  ELE H I  W+   LQ + K            PLV   P 
Sbjct: 90  DFINILHRYY--KSALVQIYELEEHKIETWREVYLQDSFK------------PLVCISPN 135

Query: 268 DSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPIL 327
            SL +    +++NK+  +P+I     +G+   IL    +   LK     F         +
Sbjct: 136 ASLFDAVSSLIRNKIHRLPVIDP--ESGNTLYILTHKRILKFLKLFITEFPKPE----FM 189

Query: 328 QQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDI 387
            + +  +Q+GT+      AN    AM+R T  +  AL + VQ  VS++P+VD+   ++DI
Sbjct: 190 SKSLEELQIGTY------AN---IAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDI 240

Query: 388 YSRSDITALAKDKAY 402
           YS+ D+  LA +K Y
Sbjct: 241 YSKFDVINLAAEKTY 255

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Sus scrofa (taxid: 9823)

>sp|P80385|AAKG1_RAT 5'-AMP-activated protein kinase subunit gamma-1 OS=Rattus norvegicus GN=Prkag1 PE=1 SV=3

 Score =  119 bits (299), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 81/254 (31%), Positives = 125/254 (49%), Gaps = 28/254 (11%)

Query: 149 SSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSAL 208
           ++F+ +H  Y+L+P S K+   D +L VK+AF  L   G+   PLWD  K  FVG+L+  
Sbjct: 29  TTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTIT 88

Query: 209 DFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYD 268
           DFI IL       + +   ELE H I  W+   LQ + K            PLV   P  
Sbjct: 89  DFINILHRY-YKSALVQIYELEEHKIETWREVYLQDSFK------------PLVCISPNA 135

Query: 269 SLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQ 328
           SL +    +++NK+  +P+I     +G+   IL    +   LK     F         + 
Sbjct: 136 SLFDAVSSLIRNKIHRLPVI--DPESGNTLYILTHKRILKFLKLFITEFPKPE----FMS 189

Query: 329 QPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIY 388
           + +  +Q+GT+      AN    AM+R T  +  AL + VQ  VS++P+VD+   ++DIY
Sbjct: 190 KSLEELQIGTY------AN---IAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIY 240

Query: 389 SRSDITALAKDKAY 402
           S+ D+  LA +K Y
Sbjct: 241 SKFDVINLAAEKTY 254

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Rattus norvegicus (taxid: 10116)

>sp|Q9UGJ0|AAKG2_HUMAN 5'-AMP-activated protein kinase subunit gamma-2 OS=Homo sapiens GN=PRKAG2 PE=1 SV=1

 Score =  111 bits (278), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/274 (27%), Positives = 130/274 (47%), Gaps = 28/274 (10%)

Query: 151 FLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDF 210
           F+ +H  Y+++P S K+   D  L VK+AF  L   G+   PLW+  K  FVG+L+  DF
Sbjct: 264 FMRSHKCYDIVPTSSKLVVFDTTLQVKKAFFALVANGVRAAPLWESKKQSFVGMLTITDF 323

Query: 211 ILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSL 270
           I IL         +   ELE H I  W+   LQ   K            PLV   P  SL
Sbjct: 324 INILHRY-YKSPMVQIYELEEHKIETWRELYLQETFK------------PLVNISPDASL 370

Query: 271 KEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQP 330
            +    +++NK+  +P+I     +G+    LY+ +   ILK + + F         ++Q 
Sbjct: 371 FDAVYSLIKNKIHRLPVIDPI--SGNA---LYILTHKRILKFL-QLFMSDMPKPAFMKQN 424

Query: 331 VSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSR 390
           +  + +GT+            A + P   +  AL + V+  +S++P+VD++  ++DIYS+
Sbjct: 425 LDELGIGTY---------HNIAFIHPDTPIIKALNIFVERRISALPVVDESGKVVDIYSK 475

Query: 391 SDITALAKDKAYAQIHLDEMNIHQVIARFLQNML 424
            D+  LA +K Y  + +      Q  +++ + ++
Sbjct: 476 FDVINLAAEKTYNNLDITVTQALQHRSQYFEGVV 509

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Homo sapiens (taxid: 9606)

>sp|Q5R4S0|AAKG2_PONAB 5'-AMP-activated protein kinase subunit gamma-2 OS=Pongo abelii GN=PRKAG2 PE=2 SV=1

 Score =  111 bits (278), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/274 (27%), Positives = 130/274 (47%), Gaps = 28/274 (10%)

Query: 151 FLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDF 210
           F+ +H  Y+++P S K+   D  L VK+AF  L   G+   PLW+  K  FVG+L+  DF
Sbjct: 219 FMRSHKCYDIVPTSSKLVVFDTTLQVKKAFFALVANGVRAAPLWESKKQSFVGMLTITDF 278

Query: 211 ILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSL 270
           I IL         +   ELE H I  W+   LQ   K            PLV   P  SL
Sbjct: 279 INILHRY-YKSPMVQIYELEEHKIETWRELYLQETFK------------PLVNISPDASL 325

Query: 271 KEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQP 330
            +    +++NK+  +P+I     +G+    LY+ +   ILK + + F         ++Q 
Sbjct: 326 LDAVYSLIKNKIHRLPVIDPI--SGNA---LYILTHKRILKFL-QLFMSDMPKPAFMKQN 379

Query: 331 VSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSR 390
           +  + +GT+            A + P   +  AL + V+  +S++P+VD++  ++DIYS+
Sbjct: 380 LDELGIGTY---------HNIAFIHPDTPIIKALNIFVERRISALPVVDESGKVVDIYSK 430

Query: 391 SDITALAKDKAYAQIHLDEMNIHQVIARFLQNML 424
            D+  LA +K Y  + +      Q  +++ + ++
Sbjct: 431 FDVINLAAEKTYNNLDITVTQALQHRSQYFEGVV 464

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Pongo abelii (taxid: 9601)

>sp|Q91WG5|AAKG2_MOUSE 5'-AMP-activated protein kinase subunit gamma-2 OS=Mus musculus GN=Prkag2 PE=1 SV=2

 Score =  110 bits (276), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/274 (27%), Positives = 130/274 (47%), Gaps = 28/274 (10%)

Query: 151 FLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDF 210
           F+ +H  Y+++P S K+   D  L VK+AF  L   G+   PLW+  K  FVG+L+  DF
Sbjct: 261 FMRSHKCYDIVPTSSKLVVFDTTLQVKKAFFALVANGVRAAPLWESKKQSFVGMLTITDF 320

Query: 211 ILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSL 270
           I IL         +   ELE H I  W+   LQ   K            PLV   P  SL
Sbjct: 321 INILHRY-YKSPMVQIYELEEHKIETWRELYLQETFK------------PLVNISPDASL 367

Query: 271 KEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQP 330
            +    +++NK+  +P+I     +G+    LY+ +   ILK + + F         ++Q 
Sbjct: 368 FDAVYSLIKNKIHRLPVIDPI--SGNA---LYILTHKRILKFL-QLFMSDMPKPAFMKQN 421

Query: 331 VSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSR 390
           +  + +GT+            A + P   +  AL + V+  +S++P+VD++  ++DIYS+
Sbjct: 422 LDELGIGTY---------HNIAFIHPDTPIIKALNIFVERRISALPVVDESGKVVDIYSK 472

Query: 391 SDITALAKDKAYAQIHLDEMNIHQVIARFLQNML 424
            D+  LA +K Y  + +      Q  +++ + ++
Sbjct: 473 FDVINLAAEKTYNNLDITVTQALQHRSQYFEGVV 506

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Mus musculus (taxid: 10090)

>sp|Q9MYP4|AAKG3_PIG 5'-AMP-activated protein kinase subunit gamma-3 OS=Sus scrofa GN=PRKAG3 PE=1 SV=2

 Score =  107 bits (268), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/271 (29%), Positives = 131/271 (48%), Gaps = 41/271 (15%)

Query: 151 FLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDF 210
           F+  HT Y+ +  S K+   D  L +K+AF  L   G+   PLWD  K  FVG+L+  DF
Sbjct: 212 FMQEHTCYDAMATSSKLVIFDTMLEIKKAFFALVANGVRAAPLWDSKKQSFVGMLTITDF 271

Query: 211 ILILRELGTNGSNLTE-EELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDS 269
           IL+L       S L +  E+E H I  W+   LQ             C +PLV   P DS
Sbjct: 272 ILVLHRY--YRSPLVQIYEIEEHKIETWREIYLQ------------GCFKPLVSISPNDS 317

Query: 270 LKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSL----P 325
           L E    +++N++  +P++     A     +L++ +   +LK     F H   +L     
Sbjct: 318 LFEAVYALIKNRIHRLPVLDPVSGA-----VLHILTHKRLLK-----FLHIFGTLLPRPS 367

Query: 326 ILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLL 385
            L + +  + +GT+         R  A++  TA + +AL + V   VS++P+V++   ++
Sbjct: 368 FLYRTIQDLGIGTF---------RDLAVVLETAPILTALDIFVDRRVSALPVVNETGQVV 418

Query: 386 DIYSRSDITALAKDKAYAQIHLDEMNIHQVI 416
            +YSR D+  LA  + Y   HLD MN+ + +
Sbjct: 419 GLYSRFDVIHLAAQQTYN--HLD-MNVGEAL 446

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Sus scrofa (taxid: 9823)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	426
359487759	482	PREDICTED: sucrose nonfermenting 4-like	0.967	0.854	0.730	1e-175
225450904	488	PREDICTED: sucrose nonfermenting 4-like	0.964	0.842	0.715	1e-173
255542654	540	AMP-activated protein kinase, gamma regu	0.957	0.755	0.717	1e-171
18390971	487	sucrose nonfermenting 4-like protein [Ar	0.967	0.845	0.702	1e-168
297849192	479	hypothetical protein ARALYDRAFT_470981 [	0.960	0.853	0.708	1e-168
312281727	487	unnamed protein product [Thellungiella h	0.967	0.845	0.687	1e-165
224123752	475	predicted protein [Populus trichocarpa]	0.955	0.856	0.675	1e-158
75037079	394	AKINbetagammaI [Arabidopsis thaliana]	0.906	0.979	0.695	1e-155
356556126	491	PREDICTED: sucrose nonfermenting 4-like	0.969	0.841	0.632	1e-153
224123152	488	predicted protein [Populus trichocarpa]	0.950	0.829	0.646	1e-153

>gi|359487759|ref|XP_003633645.1| PREDICTED: sucrose nonfermenting 4-like protein-like isoform 2 [Vitis vinifera] gi|296088362|emb|CBI36807.3| unnamed protein product [Vitis vinifera]

 Score =  619 bits (1597), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 306/419 (73%), Positives = 353/419 (84%), Gaps = 7/419 (1%)

Query: 1   MYNSGLNTGHENSGVVGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQ 60
           M+ SG  +GHENS + G++L+P RF+WP GGRRV LSGSFTRWSE +PMSP EGCP VFQ
Sbjct: 1   MFVSGAESGHENSAIPGTVLIPTRFVWPYGGRRVLLSGSFTRWSEHIPMSPIEGCPTVFQ 60

Query: 61  IICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSG- 119
           +I  L PG+HQYKF+VDGEWRHDE+QP VSGNYGVVN +++   +PD+VP   SP+T G 
Sbjct: 61  VIWSLAPGYHQYKFFVDGEWRHDEHQPFVSGNYGVVNTIFLPR-EPDVVPAVFSPDTPGG 119

Query: 120 -NMEVD-DVVMRPEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVK 177
            NM++D D   R E   + SEADL++SR R+S FLSTH  YELLP+SGKV ALDVNL VK
Sbjct: 120 SNMDLDNDPFPRGEVIPRISEADLEVSRHRVSEFLSTHIAYELLPESGKVIALDVNLPVK 179

Query: 178 QAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAW 237
           QAFH LYEQG+P+ PLWD  KG+FVGVLSALDFILILRELG +GSNLTEEELETHTISAW
Sbjct: 180 QAFHTLYEQGIPVAPLWDFCKGQFVGVLSALDFILILRELGNHGSNLTEEELETHTISAW 239

Query: 238 KVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSC 297
           K GKL L   RQ+DG+GR CPR LV AGPYDSLK+V LKILQNKVATVPIIHS    GS 
Sbjct: 240 KEGKLHL---RQIDGSGRLCPRHLVHAGPYDSLKDVTLKILQNKVATVPIIHSASQDGSF 296

Query: 298 QEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPT 357
            ++L+LASLS ILKCICRHF+HSSSSLPILQQP+ SI +GTWVP+IGE+NG+PFAMLRP 
Sbjct: 297 PQLLHLASLSGILKCICRHFRHSSSSLPILQQPICSIPVGTWVPKIGESNGQPFAMLRPN 356

Query: 358 ASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQVI 416
           ASLG+AL+LLVQA+VSSIPIVDDNDSLLDIYSRSDITALAKD+AYAQIHLD M+IHQ +
Sbjct: 357 ASLGAALSLLVQAEVSSIPIVDDNDSLLDIYSRSDITALAKDRAYAQIHLDNMSIHQAL 415

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450904|ref|XP_002284480.1| PREDICTED: sucrose nonfermenting 4-like protein-like isoform 1 [Vitis vinifera]

 Score =  614 bits (1583), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 305/426 (71%), Positives = 353/426 (82%), Gaps = 15/426 (3%)

Query: 1   MYNSGLNTGHENSGVVGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQ 60
           M+ SG  +GHENS + G++L+P RF+WP GGRRV LSGSFTRWSE +PMSP EGCP VFQ
Sbjct: 1   MFVSGAESGHENSAIPGTVLIPTRFVWPYGGRRVLLSGSFTRWSEHIPMSPIEGCPTVFQ 60

Query: 61  IICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSG- 119
           +I  L PG+HQYKF+VDGEWRHDE+QP VSGNYGVVN +++   +PD+VP   SP+T G 
Sbjct: 61  VIWSLAPGYHQYKFFVDGEWRHDEHQPFVSGNYGVVNTIFLPR-EPDVVPAVFSPDTPGG 119

Query: 120 -NMEVDDVVMRPEG--------FAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTAL 170
            NM++D+    P G          + SEADL++SR R+S FLSTH  YELLP+SGKV AL
Sbjct: 120 SNMDLDNDPF-PRGSSGTLQEVIPRISEADLEVSRHRVSEFLSTHIAYELLPESGKVIAL 178

Query: 171 DVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELE 230
           DVNL VKQAFH LYEQG+P+ PLWD  KG+FVGVLSALDFILILRELG +GSNLTEEELE
Sbjct: 179 DVNLPVKQAFHTLYEQGIPVAPLWDFCKGQFVGVLSALDFILILRELGNHGSNLTEEELE 238

Query: 231 THTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHS 290
           THTISAWK GKL L   RQ+DG+GR CPR LV AGPYDSLK+V LKILQNKVATVPIIHS
Sbjct: 239 THTISAWKEGKLHL---RQIDGSGRLCPRHLVHAGPYDSLKDVTLKILQNKVATVPIIHS 295

Query: 291 TGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRP 350
               GS  ++L+LASLS ILKCICRHF+HSSSSLPILQQP+ SI +GTWVP+IGE+NG+P
Sbjct: 296 ASQDGSFPQLLHLASLSGILKCICRHFRHSSSSLPILQQPICSIPVGTWVPKIGESNGQP 355

Query: 351 FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEM 410
           FAMLRP ASLG+AL+LLVQA+VSSIPIVDDNDSLLDIYSRSDITALAKD+AYAQIHLD M
Sbjct: 356 FAMLRPNASLGAALSLLVQAEVSSIPIVDDNDSLLDIYSRSDITALAKDRAYAQIHLDNM 415

Query: 411 NIHQVI 416
           +IHQ +
Sbjct: 416 SIHQAL 421

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542654|ref|XP_002512390.1| AMP-activated protein kinase, gamma regulatory subunit, putative [Ricinus communis] gi|223548351|gb|EEF49842.1| AMP-activated protein kinase, gamma regulatory subunit, putative [Ricinus communis]

 Score =  608 bits (1567), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 299/417 (71%), Positives = 355/417 (85%), Gaps = 9/417 (2%)

Query: 1   MYNSGLNTGHENSGVVGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQ 60
           M+ SG +TGH ++GV+     P+RF+WP GGR V LSG+FT W++ +PMSP EGCP VFQ
Sbjct: 1   MFGSGQDTGHGSTGVL-----PLRFVWPYGGRSVFLSGTFTGWTDHIPMSPVEGCPTVFQ 55

Query: 61  IICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSG- 119
           +IC L PG+HQYKF+VDGEWR+DE+QP VSGNYGVVN V++   +P+MVP   + ET+G 
Sbjct: 56  VICSLTPGYHQYKFFVDGEWRYDEHQPSVSGNYGVVNTVFLPR-EPNMVPPIPNSETAGS 114

Query: 120 NMEVDDVVMRPEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQA 179
           NME+D+V +RPE   + SEADL++SR R S+FLSTHT YELLP+SGKV ALDVNL VKQA
Sbjct: 115 NMELDEVFLRPEVSPRGSEADLEVSRHRFSAFLSTHTAYELLPESGKVIALDVNLPVKQA 174

Query: 180 FHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKV 239
           FHVLYEQG+P+ PLWD  KG+FVGVLSALDFILILRELG +GSNLTEEELETHTISAWK 
Sbjct: 175 FHVLYEQGVPLAPLWDFCKGQFVGVLSALDFILILRELGNHGSNLTEEELETHTISAWKE 234

Query: 240 GKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQE 299
           GKL LN  RQ+DG+GR  PR L+ AGPYDSLK+VALKILQN V+T+PIIHS+   GS  +
Sbjct: 235 GKLHLN--RQIDGDGRAYPRSLIHAGPYDSLKDVALKILQNNVSTIPIIHSSSRDGSFPQ 292

Query: 300 ILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTAS 359
           +L+LASLS ILKCICRHF+HS+SSLP+LQQP+ SI LGTWVP+IGE+N RPFAMLRP AS
Sbjct: 293 LLHLASLSGILKCICRHFRHSASSLPVLQQPICSIPLGTWVPKIGESNVRPFAMLRPNAS 352

Query: 360 LGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQVI 416
           LG AL+LLVQA+VSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLD+++IHQ +
Sbjct: 353 LGDALSLLVQAEVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDKISIHQAL 409

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18390971|ref|NP_563834.1| sucrose nonfermenting 4-like protein [Arabidopsis thaliana] gi|75249553|sp|Q944A6.1|SNF4_ARATH RecName: Full=Sucrose nonfermenting 4-like protein; Short=SNF4; AltName: Full=CBS domain-containing protein CBSCBS3; AltName: Full=SNF1-related protein kinase regulatory subunit betagamma; Short=AKIN subunit betagamma; Short=AKINbetagamma gi|16612255|gb|AAL27498.1|AF439826_1 At1g09020/F7G19_11 [Arabidopsis thaliana] gi|23308443|gb|AAN18191.1| At1g09020/F7G19_11 [Arabidopsis thaliana] gi|75037070|gb|ABA12450.1| AKINbetagamma [Arabidopsis thaliana] gi|332190262|gb|AEE28383.1| sucrose nonfermenting 4-like protein [Arabidopsis thaliana]

 Score =  599 bits (1544), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 297/423 (70%), Positives = 344/423 (81%), Gaps = 11/423 (2%)

Query: 1   MYNSGLNTGHENSGVVGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQ 60
           M+ S L++   NS   G +L P RF+WP GGRRV LSGSFTRW+E +PMSP EGCP VFQ
Sbjct: 1   MFGSTLDSSRGNSAASGQLLTPTRFVWPYGGRRVFLSGSFTRWTEHVPMSPLEGCPTVFQ 60

Query: 61  IICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSG- 119
           +IC L PG+HQYKF+VDGEWRHDE+QP VSGN GVVN ++I    PDMVP   SPET G 
Sbjct: 61  VICNLTPGYHQYKFFVDGEWRHDEHQPFVSGNGGVVNTIFIT--GPDMVPAGFSPETLGR 118

Query: 120 -NMEVDDVVMRP-----EGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVN 173
            NM+VDDV +R      E   + S  DL+LSR RIS  LST T YELLP+SGKV ALDVN
Sbjct: 119 SNMDVDDVFLRTADPSQEAVPRMSGVDLELSRHRISVLLSTRTAYELLPESGKVIALDVN 178

Query: 174 LAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHT 233
           L VKQAFH+LYEQG+P+ PLWD  KG+FVGVL  LDFILILRELGT+GSNLTEEELETHT
Sbjct: 179 LPVKQAFHILYEQGIPLAPLWDFGKGQFVGVLGPLDFILILRELGTHGSNLTEEELETHT 238

Query: 234 ISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGP 293
           I+AWK GK  ++  RQ DG+GRP PRPLVQ GPYD+LK+VALKILQNKVA VP+I+S+  
Sbjct: 239 IAAWKEGKAHIS--RQYDGSGRPYPRPLVQVGPYDNLKDVALKILQNKVAAVPVIYSSLQ 296

Query: 294 AGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAM 353
            GS  ++L+LASLS ILKCICR+F+HSSSSLPILQQP+ SI LGTWVPRIGE++ +P A 
Sbjct: 297 DGSYPQLLHLASLSGILKCICRYFRHSSSSLPILQQPICSIPLGTWVPRIGESSSKPLAT 356

Query: 354 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIH 413
           LRP ASLGSALALLVQA+VSSIP+VDDNDSL+DIYSRSDITALAKDKAYAQIHLD+M +H
Sbjct: 357 LRPHASLGSALALLVQAEVSSIPVVDDNDSLIDIYSRSDITALAKDKAYAQIHLDDMTVH 416

Query: 414 QVI 416
           Q +
Sbjct: 417 QAL 419

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297849192|ref|XP_002892477.1| hypothetical protein ARALYDRAFT_470981 [Arabidopsis lyrata subsp. lyrata] gi|297338319|gb|EFH68736.1| hypothetical protein ARALYDRAFT_470981 [Arabidopsis lyrata subsp. lyrata]

 Score =  598 bits (1541), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 296/418 (70%), Positives = 343/418 (82%), Gaps = 9/418 (2%)

Query: 1   MYNSGLNTGHENSGVVGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQ 60
           M+ S L++   NS   G +L P RF+WP GGRRV LSGSFTRW+E +PMSP EGCP VFQ
Sbjct: 1   MFGSTLDSSRGNSAASGQLLTPTRFVWPYGGRRVFLSGSFTRWTEHVPMSPLEGCPTVFQ 60

Query: 61  IICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSG- 119
           +IC L PG+HQYKF+VDGEWRHDE+QP VSGN GVVN ++I    PDMVP   SPET G 
Sbjct: 61  VICNLTPGYHQYKFFVDGEWRHDEHQPFVSGNGGVVNTIFIT--GPDMVPAGFSPETLGR 118

Query: 120 -NMEVDDVVMRPEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQ 178
            NM+VDDV +R    A  S  DL++SR RIS  LST T YELLP+SGKV ALDVNL VKQ
Sbjct: 119 SNMDVDDVFLRT---ADPSGVDLEVSRHRISVLLSTRTAYELLPESGKVIALDVNLPVKQ 175

Query: 179 AFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWK 238
           AFH+LYEQG+P+ PLWD  KG+FVGVL  LDFILILRELGT+GSNLTEEELETHTI+AWK
Sbjct: 176 AFHILYEQGIPLAPLWDFGKGQFVGVLGPLDFILILRELGTHGSNLTEEELETHTIAAWK 235

Query: 239 VGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQ 298
            GK  ++  RQ DG+GRP PRPLVQ GPYD+LK+VALKILQNKVA VP+I+S+   GS  
Sbjct: 236 EGKAHIS--RQFDGSGRPYPRPLVQVGPYDNLKDVALKILQNKVAAVPVIYSSLQDGSYP 293

Query: 299 EILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTA 358
           ++L+LASLS ILKCICR+F+HSSSSLPILQQP+ SI LGTWVPRIGE++ +P A LRP A
Sbjct: 294 QLLHLASLSGILKCICRYFRHSSSSLPILQQPICSIPLGTWVPRIGESSSKPLATLRPHA 353

Query: 359 SLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQVI 416
           SLGSALALLVQA+VSSIP+VDDNDSL+DIYSRSDITALAKDKAYAQIHLD+M +HQ +
Sbjct: 354 SLGSALALLVQAEVSSIPVVDDNDSLIDIYSRSDITALAKDKAYAQIHLDDMTVHQAL 411

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312281727|dbj|BAJ33729.1| unnamed protein product [Thellungiella halophila]

 Score =  587 bits (1512), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 291/423 (68%), Positives = 340/423 (80%), Gaps = 11/423 (2%)

Query: 1   MYNSGLNTGHENSGVVGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQ 60
           M+ S L++   NS   G +L P RF+WP GGRRV LSGSFTRW+E +PMSP EGCP VFQ
Sbjct: 1   MFGSTLDSSRGNSAASGQLLTPTRFVWPYGGRRVFLSGSFTRWTEHVPMSPLEGCPTVFQ 60

Query: 61  IICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSG- 119
           +IC L PG+HQYKF+VDGEWRHDE+QP VSGN GV+N ++I     DMVP    PET G 
Sbjct: 61  VICNLTPGYHQYKFFVDGEWRHDEHQPFVSGNGGVMNTIFIT--GQDMVPTGFIPETLGR 118

Query: 120 -NMEVDDVVMR-----PEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVN 173
            NM+VD V  R      E   + S  DL++SR RIS  LST T YELLP+SGKV ALDVN
Sbjct: 119 ENMDVDGVFPRMTDSPQESIPRMSSVDLEVSRHRISVLLSTRTAYELLPESGKVIALDVN 178

Query: 174 LAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHT 233
           L VKQAFH+LYEQG+P+ PLWD  KG+FVGVL  LDFILILRELGT+GSNLTEEELETHT
Sbjct: 179 LPVKQAFHILYEQGIPLAPLWDFGKGQFVGVLGPLDFILILRELGTHGSNLTEEELETHT 238

Query: 234 ISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGP 293
           I+AWK GK  ++  RQ DG+GRP PRPLVQ GPYD+LK+VALKILQNKVA VP+I+S+  
Sbjct: 239 IAAWKEGKAHIS--RQFDGSGRPYPRPLVQVGPYDNLKDVALKILQNKVAAVPVIYSSLQ 296

Query: 294 AGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAM 353
            GS  ++L+LASLS ILKCICR+F+HSSSSLPILQQP+ SI LGTWVPRIGE++ +P A 
Sbjct: 297 DGSYPQLLHLASLSGILKCICRYFRHSSSSLPILQQPICSIPLGTWVPRIGESSSKPLAT 356

Query: 354 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIH 413
           LRP ASLGSAL+LLVQA+VSSIP+VDDNDSL+DIYSRSDITALAKDKAYAQIHLD+M +H
Sbjct: 357 LRPHASLGSALSLLVQAEVSSIPVVDDNDSLIDIYSRSDITALAKDKAYAQIHLDDMTVH 416

Query: 414 QVI 416
           Q +
Sbjct: 417 QAL 419

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123752|ref|XP_002330199.1| predicted protein [Populus trichocarpa] gi|222871655|gb|EEF08786.1| predicted protein [Populus trichocarpa]

 Score =  563 bits (1450), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 281/416 (67%), Positives = 334/416 (80%), Gaps = 9/416 (2%)

Query: 1   MYNSGLNTGHENSGVVGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQ 60
           M+ SG +TGH+NSGV+     PVRF+WP GG  VS+ G+FTRW + +PMSP EGCP VFQ
Sbjct: 1   MFGSGSSTGHDNSGVI-----PVRFVWPYGGGEVSIFGTFTRWIDLLPMSPVEGCPNVFQ 55

Query: 61  IICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSGN 120
           I+  L PG HQ+KF VDG+WR DE    V G YGVVN V +    P  + N+ +P  S N
Sbjct: 56  IVVSLVPGLHQFKFRVDGQWRVDEQLSFVDGPYGVVNTV-VLTKDPPQILNSETPGRS-N 113

Query: 121 MEVDDVVMRPEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAF 180
           ME+DDV + PE     S  +L++SR RIS+FLSTHT YELLP+SGKV ALDV L VKQAF
Sbjct: 114 MELDDVSVCPEVIQGISATELEVSRHRISAFLSTHTAYELLPESGKVIALDVTLPVKQAF 173

Query: 181 HVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVG 240
           H+LYEQG+PM PLWD  KG+FVGVL+ALDFILILRELGT+GSNLTEEELETHTISAWK G
Sbjct: 174 HILYEQGIPMAPLWDFCKGQFVGVLTALDFILILRELGTHGSNLTEEELETHTISAWKEG 233

Query: 241 KLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEI 300
           K+ LN  RQ+DG+GR   + L+ AGPYDS+K+V+LKILQN V+TVPIIHS    GS  ++
Sbjct: 234 KMHLN--RQIDGSGRAYSKHLIHAGPYDSMKDVSLKILQNSVSTVPIIHSASQDGSFPQL 291

Query: 301 LYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASL 360
           L+LASLS ILKCICR+F+HS+ SLPILQQP+ SI LGTWVP+IGE N RPFAMLRP ASL
Sbjct: 292 LHLASLSGILKCICRYFRHSAGSLPILQQPICSIPLGTWVPKIGEPNRRPFAMLRPNASL 351

Query: 361 GSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQVI 416
           G+AL+LL QA+VSSIPIV+DNDSLLD+YSRSDITALAKDKAYAQIHLDE++IHQ +
Sbjct: 352 GAALSLLAQANVSSIPIVNDNDSLLDVYSRSDITALAKDKAYAQIHLDEISIHQAL 407

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|75037079|gb|ABA12451.1| AKINbetagammaI [Arabidopsis thaliana]

 Score =  553 bits (1425), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 276/397 (69%), Positives = 320/397 (80%), Gaps = 11/397 (2%)

Query: 1   MYNSGLNTGHENSGVVGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQ 60
           M+ S L++   NS   G +L P RF+WP GGRRV LSGSFTRW+E +PMSP EGCP VFQ
Sbjct: 1   MFGSTLDSSRGNSAASGQLLTPTRFVWPYGGRRVFLSGSFTRWTEHVPMSPLEGCPTVFQ 60

Query: 61  IICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSG- 119
           +IC L PG+HQYKF+VDGEWRHDE+QP VSGN GVVN ++I    PDMVP   SPET G 
Sbjct: 61  VICNLTPGYHQYKFFVDGEWRHDEHQPFVSGNGGVVNTIFIT--GPDMVPAGFSPETLGR 118

Query: 120 -NMEVDDVVMRP-----EGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVN 173
            NM+VDDV +R      E   + S  DL+LSR RIS  LST T YELLP+SGKV ALDVN
Sbjct: 119 SNMDVDDVFLRTADPSQEAVPRMSGVDLELSRHRISVLLSTRTAYELLPESGKVIALDVN 178

Query: 174 LAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHT 233
           L VKQAFH+LYEQG+P+ PLWD  KG+FVGVL  LDFILILRELGT+GSNLTEEELETHT
Sbjct: 179 LPVKQAFHILYEQGIPLAPLWDFGKGQFVGVLGPLDFILILRELGTHGSNLTEEELETHT 238

Query: 234 ISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGP 293
           I+AWK GK  ++  RQ DG+GRP PRPLVQ GPYD+LK+VALKILQNKVA VP+I+S+  
Sbjct: 239 IAAWKEGKAHIS--RQYDGSGRPYPRPLVQVGPYDNLKDVALKILQNKVAAVPVIYSSLQ 296

Query: 294 AGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAM 353
            GS  ++L+LASLS ILKCICR+F+HSSSSLPILQQP+ SI LGTWVPRIGE++ +P A 
Sbjct: 297 DGSYPQLLHLASLSGILKCICRYFRHSSSSLPILQQPICSIPLGTWVPRIGESSSKPLAT 356

Query: 354 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSR 390
           LRP ASLGSALALLVQA+VSSIP+VDDNDSL+DIYSR
Sbjct: 357 LRPHASLGSALALLVQAEVSSIPVVDDNDSLIDIYSR 393

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556126|ref|XP_003546378.1| PREDICTED: sucrose nonfermenting 4-like protein-like [Glycine max]

 Score =  548 bits (1412), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 270/427 (63%), Positives = 333/427 (77%), Gaps = 14/427 (3%)

Query: 1   MYNSGLNTGHENSGVVGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQ 60
           M+   +++     GV G++L+P+RF+WP GGR V LSGSFTRW E +PMSP EGCP VFQ
Sbjct: 1   MFGQSMDSARNAGGVAGTVLIPMRFVWPYGGRSVFLSGSFTRWLELLPMSPVEGCPTVFQ 60

Query: 61  IICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSGN 120
           +I  LPPG+HQYKF+VDGEWRHDE+QP+V G+YG+VN V++A   P+ +P       SGN
Sbjct: 61  VIYNLPPGYHQYKFFVDGEWRHDEHQPYVPGDYGIVNTVFLAT-DPNYIPVLPPDVASGN 119

Query: 121 -MEVDDVVMR----------PEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTA 169
            M+VD+   R           E   + S+ D+Q+SR RIS+FLS+HT YELLP+SGKV A
Sbjct: 120 SMDVDNDAFRRMVRLTDGTLSEVLPRISDTDVQISRQRISAFLSSHTAYELLPESGKVVA 179

Query: 170 LDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEEL 229
           LDV+L VKQAFH+L+EQG+ M PLWD  KG+FVGVLSALDFILILRELG +GSNLTEEEL
Sbjct: 180 LDVDLPVKQAFHILHEQGIFMAPLWDFCKGQFVGVLSALDFILILRELGNHGSNLTEEEL 239

Query: 230 ETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIH 289
           ETHTISAWK GK  LN  RQ +G+G    R  + AGPYD+LK++A+KILQ +V+TVPIIH
Sbjct: 240 ETHTISAWKEGKSYLN--RQNNGHGTMFSRRFIHAGPYDNLKDIAMKILQKEVSTVPIIH 297

Query: 290 STGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGR 349
           S+    S  ++L+LASLS ILKCICR+F+H SSSLP+LQ P+ +I +GTWVP+IGE+N +
Sbjct: 298 SSSEDASFPQLLHLASLSGILKCICRYFRHCSSSLPVLQLPICAIPVGTWVPKIGESNRQ 357

Query: 350 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDE 409
           P AMLRPTASL SAL LLVQA VSSIPIVDDNDSLLDIY RSDITALAK++AYA I+LDE
Sbjct: 358 PLAMLRPTASLASALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKNRAYAHINLDE 417

Query: 410 MNIHQVI 416
           M +HQ +
Sbjct: 418 MTVHQAL 424

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123152|ref|XP_002319007.1| predicted protein [Populus trichocarpa] gi|222857383|gb|EEE94930.1| predicted protein [Populus trichocarpa]

 Score =  546 bits (1407), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 278/430 (64%), Positives = 333/430 (77%), Gaps = 25/430 (5%)

Query: 1   MYNSGLNTGHENSGVVGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQ 60
           M+ SG +TGH+NSGV      PVRF+WP GG  VS+ G+FTRW++ +PMSP EGCP V+Q
Sbjct: 1   MFGSGSSTGHDNSGVS-----PVRFVWPYGGGEVSIFGTFTRWTDLIPMSPMEGCPNVYQ 55

Query: 61  IICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSG- 119
           ++  L PG HQ+KFYVDG+WR DE    VSG YG VN V +    P +    I  ET G 
Sbjct: 56  VVISLVPGLHQFKFYVDGQWRVDEQLSFVSGPYGPVNTVVLTKDPPQI----IDSETPGR 111

Query: 120 -NMEVDD------------VVMRPEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGK 166
            NME+DD            V    E     S ADL++SR RIS+FLSTHT YELLP+SGK
Sbjct: 112 SNMELDDYFFIGAELVTLLVGTFQEVIQGMSAADLEVSRHRISAFLSTHTAYELLPESGK 171

Query: 167 VTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTE 226
           V ALDV L VK+AFH+LYEQG+P  PLWD  KG+FVGVL+ALDFILILRELGT+GSNLTE
Sbjct: 172 VIALDVTLPVKRAFHILYEQGIPTAPLWDFCKGQFVGVLAALDFILILRELGTHGSNLTE 231

Query: 227 EELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVP 286
           EELETHTISAWK GK+ L+  RQ+DG+GR   + L+ AGPYDSLK+VA KILQN ++TVP
Sbjct: 232 EELETHTISAWKEGKMHLS--RQIDGSGRAYSKHLIHAGPYDSLKDVASKILQNSISTVP 289

Query: 287 IIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEA 346
           I+HS+   GS  ++L+LASLS ILKCICR+F+HS+ SLPILQQP+ SI LGTWVP+IGE 
Sbjct: 290 ILHSSAQDGSFPQLLHLASLSGILKCICRYFRHSAGSLPILQQPICSIPLGTWVPKIGEP 349

Query: 347 NGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIH 406
           N RPFAML+P ASLG+AL+LLVQA+VSSIPIV+DNDSLLD+YSRSDITALAKDKAYAQIH
Sbjct: 350 NRRPFAMLKPNASLGAALSLLVQANVSSIPIVNDNDSLLDVYSRSDITALAKDKAYAQIH 409

Query: 407 LDEMNIHQVI 416
           LDE++IHQ +
Sbjct: 410 LDEISIHQAL 419

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	426
TAIR|locus:2036079	487	SNF4 "homolog of yeast sucrose	0.967	0.845	0.704	1.4e-156
UNIPROTKB|F1PBG0	328	PRKAG1 "Uncharacterized protei	0.384	0.5	0.336	4e-16
UNIPROTKB|F1MH48	330	PRKAG1 "5'-AMP-activated prote	0.384	0.496	0.336	4.3e-16
UNIPROTKB|P58108	330	PRKAG1 "5'-AMP-activated prote	0.384	0.496	0.336	4.3e-16
UNIPROTKB|Q09138	330	PRKAG1 "5'-AMP-activated prote	0.384	0.496	0.336	4.3e-16
UNIPROTKB|P54619	331	PRKAG1 "5'-AMP-activated prote	0.384	0.495	0.336	4.5e-16
UNIPROTKB|F1SSN2	331	PRKAG2 "Uncharacterized protei	0.406	0.522	0.296	9.7e-16
MGI|MGI:108411	330	Prkag1 "protein kinase, AMP-ac	0.384	0.496	0.336	1.4e-15
RGD|1308698	493	Prkag3 "protein kinase, AMP-ac	0.403	0.348	0.293	1.8e-15
RGD|3388	330	Prkag1 "protein kinase, AMP-ac	0.424	0.548	0.315	1.9e-15

TAIR|locus:2036079 SNF4 "homolog of yeast sucrose nonfermenting 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 1526 (542.2 bits), Expect = 1.4e-156, P = 1.4e-156
 Identities = 298/423 (70%), Positives = 345/423 (81%)

Query:     1 MYNSGLNTGHENSGVVGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQ 60
             M+ S L++   NS   G +L P RF+WP GGRRV LSGSFTRW+E +PMSP EGCP VFQ
Sbjct:     1 MFGSTLDSSRGNSAASGQLLTPTRFVWPYGGRRVFLSGSFTRWTEHVPMSPLEGCPTVFQ 60

Query:    61 IICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSG- 119
             +IC L PG+HQYKF+VDGEWRHDE+QP VSGN GVVN ++I    PDMVP   SPET G 
Sbjct:    61 VICNLTPGYHQYKFFVDGEWRHDEHQPFVSGNGGVVNTIFIT--GPDMVPAGFSPETLGR 118

Query:   120 -NMEVDDVVMR---P--EGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVN 173
              NM+VDDV +R   P  E   + S  DL+LSR RIS  LST T YELLP+SGKV ALDVN
Sbjct:   119 SNMDVDDVFLRTADPSQEAVPRMSGVDLELSRHRISVLLSTRTAYELLPESGKVIALDVN 178

Query:   174 LAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHT 233
             L VKQAFH+LYEQG+P+ PLWD  KG+FVGVL  LDFILILRELGT+GSNLTEEELETHT
Sbjct:   179 LPVKQAFHILYEQGIPLAPLWDFGKGQFVGVLGPLDFILILRELGTHGSNLTEEELETHT 238

Query:   234 ISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGP 293
             I+AWK GK  ++  RQ DG+GRP PRPLVQ GPYD+LK+VALKILQNKVA VP+I+S+  
Sbjct:   239 IAAWKEGKAHIS--RQYDGSGRPYPRPLVQVGPYDNLKDVALKILQNKVAAVPVIYSSLQ 296

Query:   294 AGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAM 353
              GS  ++L+LASLS ILKCICR+F+HSSSSLPILQQP+ SI LGTWVPRIGE++ +P A 
Sbjct:   297 DGSYPQLLHLASLSGILKCICRYFRHSSSSLPILQQPICSIPLGTWVPRIGESSSKPLAT 356

Query:   354 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIH 413
             LRP ASLGSALALLVQA+VSSIP+VDDNDSL+DIYSRSDITALAKDKAYAQIHLD+M +H
Sbjct:   357 LRPHASLGSALALLVQAEVSSIPVVDDNDSLIDIYSRSDITALAKDKAYAQIHLDDMTVH 416

Query:   414 QVI 416
             Q +
Sbjct:   417 QAL 419

GO:0005634 "nucleus" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0030295 "protein kinase activator activity" evidence=ISS

GO:0042149 "cellular response to glucose starvation" evidence=IDA

GO:0004674 "protein serine/threonine kinase activity" evidence=IDA

GO:0046777 "protein autophosphorylation" evidence=IDA

UNIPROTKB|F1PBG0 PRKAG1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 199 (75.1 bits), Expect = 4.0e-16, Sum P(2) = 4.0e-16
 Identities = 62/184 (33%), Positives = 87/184 (47%)

Query:   149 SSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSAL 208
             +SF+ +H  Y+L+P S K+   D +L VK+AF  L   G+   PLWD  K  FVG+L+  
Sbjct:    28 TSFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTIT 87

Query:   209 DFILILRELGTNGSNLTE-EELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPY 267
             DFI IL       S L +  ELE H I  W+   LQ + K            PLV   P 
Sbjct:    88 DFINILHRYYK--SALVQIYELEEHKIETWREVYLQDSFK------------PLVCISPN 133

Query:   268 DSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHF---KHSSSSL 324
              SL +    +++NK+  +P+I     +G+   IL    +   LK     F   +  S SL
Sbjct:   134 ASLFDAVSSLIRNKIHRLPVIDPE--SGNTLYILTHKRILKFLKLFITEFPKPEFMSKSL 191

Query:   325 PILQ 328
               LQ
Sbjct:   192 EELQ 195

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1MH48 PRKAG1 "5'-AMP-activated protein kinase subunit gamma-1" [Bos taurus (taxid:9913)]

 Score = 199 (75.1 bits), Expect = 4.3e-16, Sum P(2) = 4.3e-16
 Identities = 62/184 (33%), Positives = 87/184 (47%)

Query:   149 SSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSAL 208
             +SF+ +H  Y+L+P S K+   D +L VK+AF  L   G+   PLWD  K  FVG+L+  
Sbjct:    30 TSFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTIT 89

Query:   209 DFILILRELGTNGSNLTE-EELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPY 267
             DFI IL       S L +  ELE H I  W+   LQ + K            PLV   P 
Sbjct:    90 DFINILHRYYK--SALVQIYELEEHKIETWREVYLQDSFK------------PLVCISPN 135

Query:   268 DSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHF---KHSSSSL 324
              SL +    +++NK+  +P+I     +G+   IL    +   LK     F   +  S SL
Sbjct:   136 ASLFDAVSSLIRNKIHRLPVIDPE--SGNTLYILTHKRILKFLKLFITEFPKPEFMSKSL 193

Query:   325 PILQ 328
               LQ
Sbjct:   194 EELQ 197

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|P58108 PRKAG1 "5'-AMP-activated protein kinase subunit gamma-1" [Bos taurus (taxid:9913)]

 Score = 199 (75.1 bits), Expect = 4.3e-16, Sum P(2) = 4.3e-16
 Identities = 62/184 (33%), Positives = 87/184 (47%)

Query:   149 SSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSAL 208
             +SF+ +H  Y+L+P S K+   D +L VK+AF  L   G+   PLWD  K  FVG+L+  
Sbjct:    30 TSFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTIT 89

Query:   209 DFILILRELGTNGSNLTE-EELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPY 267
             DFI IL       S L +  ELE H I  W+   LQ + K            PLV   P 
Sbjct:    90 DFINILHRYYK--SALVQIYELEEHKIETWREVYLQDSFK------------PLVCISPN 135

Query:   268 DSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHF---KHSSSSL 324
              SL +    +++NK+  +P+I     +G+   IL    +   LK     F   +  S SL
Sbjct:   136 ASLFDAVSSLIRNKIHRLPVIDPE--SGNTLYILTHKRILKFLKLFITEFPKPEFMSKSL 193

Query:   325 PILQ 328
               LQ
Sbjct:   194 EELQ 197

GO:0005634 "nucleus" evidence=ISS

GO:0004679 "AMP-activated protein kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=ISS

GO:0016208 "AMP binding" evidence=ISS

GO:0043531 "ADP binding" evidence=ISS

GO:0031588 "AMP-activated protein kinase complex" evidence=ISS

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

UNIPROTKB|Q09138 PRKAG1 "5'-AMP-activated protein kinase subunit gamma-1" [Sus scrofa (taxid:9823)]

 Score = 199 (75.1 bits), Expect = 4.3e-16, Sum P(2) = 4.3e-16
 Identities = 62/184 (33%), Positives = 87/184 (47%)

Query:   149 SSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSAL 208
             +SF+ +H  Y+L+P S K+   D +L VK+AF  L   G+   PLWD  K  FVG+L+  
Sbjct:    30 TSFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTIT 89

Query:   209 DFILILRELGTNGSNLTE-EELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPY 267
             DFI IL       S L +  ELE H I  W+   LQ + K            PLV   P 
Sbjct:    90 DFINILHRYYK--SALVQIYELEEHKIETWREVYLQDSFK------------PLVCISPN 135

Query:   268 DSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHF---KHSSSSL 324
              SL +    +++NK+  +P+I     +G+   IL    +   LK     F   +  S SL
Sbjct:   136 ASLFDAVSSLIRNKIHRLPVIDPE--SGNTLYILTHKRILKFLKLFITEFPKPEFMSKSL 193

Query:   325 PILQ 328
               LQ
Sbjct:   194 EELQ 197

GO:0004679 "AMP-activated protein kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=ISS

GO:0016208 "AMP binding" evidence=ISS

GO:0043531 "ADP binding" evidence=ISS

GO:0031588 "AMP-activated protein kinase complex" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

UNIPROTKB|P54619 PRKAG1 "5'-AMP-activated protein kinase subunit gamma-1" [Homo sapiens (taxid:9606)]

 Score = 199 (75.1 bits), Expect = 4.5e-16, Sum P(2) = 4.5e-16
 Identities = 62/184 (33%), Positives = 87/184 (47%)

Query:   149 SSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSAL 208
             +SF+ +H  Y+L+P S K+   D +L VK+AF  L   G+   PLWD  K  FVG+L+  
Sbjct:    30 TSFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTIT 89

Query:   209 DFILILRELGTNGSNLTE-EELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPY 267
             DFI IL       S L +  ELE H I  W+   LQ + K            PLV   P 
Sbjct:    90 DFINILHRYYK--SALVQIYELEEHKIETWREVYLQDSFK------------PLVCISPN 135

Query:   268 DSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHF---KHSSSSL 324
              SL +    +++NK+  +P+I     +G+   IL    +   LK     F   +  S SL
Sbjct:   136 ASLFDAVSSLIRNKIHRLPVIDPE--SGNTLYILTHKRILKFLKLFITEFPKPEFMSKSL 193

Query:   325 PILQ 328
               LQ
Sbjct:   194 EELQ 197

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0043531 "ADP binding" evidence=ISS

GO:0016208 "AMP binding" evidence=ISS

GO:0004679 "AMP-activated protein kinase activity" evidence=ISS

GO:0031588 "AMP-activated protein kinase complex" evidence=ISS

GO:0006468 "protein phosphorylation" evidence=IDA

GO:0004672 "protein kinase activity" evidence=IDA

GO:0010628 "positive regulation of gene expression" evidence=IDA

GO:0005524 "ATP binding" evidence=ISS

GO:0004691 "cAMP-dependent protein kinase activity" evidence=TAS

GO:0007165 "signal transduction" evidence=TAS

GO:0007283 "spermatogenesis" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0007050 "cell cycle arrest" evidence=TAS

GO:0008286 "insulin receptor signaling pathway" evidence=TAS

GO:0046320 "regulation of fatty acid oxidation" evidence=TAS

GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=TAS

GO:0006110 "regulation of glycolysis" evidence=TAS

GO:0045860 "positive regulation of protein kinase activity" evidence=TAS

GO:0019901 "protein kinase binding" evidence=IDA

UNIPROTKB|F1SSN2 PRKAG2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 202 (76.2 bits), Expect = 9.7e-16, Sum P(2) = 9.7e-16
 Identities = 56/189 (29%), Positives = 92/189 (48%)

Query:   151 FLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDF 210
             F+ +H  Y+++P S K+   D  L VK+AF  L   G+   PLW+  K  FVG+L+  DF
Sbjct:    23 FMRSHKCYDIVPTSSKLVVFDTTLQVKKAFFALVANGVRAAPLWESKKQSFVGMLTITDF 82

Query:   211 ILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSL 270
             I IL         +   ELE H I  W+V   +L L+           +PLV   P  SL
Sbjct:    83 INILHRY-YKSPMVQIYELEEHKIETWRVNT-ELYLQETF--------KPLVNISPDASL 132

Query:   271 KEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQP 330
              +    +++NK+  +P+I     +G+    LY+ +   ILK + + F         ++Q 
Sbjct:   133 FDAVHSLIKNKIHRLPVIDPV--SGNA---LYILTHKRILKFL-QLFMSDMPKPAFMKQN 186

Query:   331 VSSIQLGTW 339
             + ++ +GT+
Sbjct:   187 LDALGIGTY 195

GO:0043531 "ADP binding" evidence=IEA

GO:0031588 "AMP-activated protein kinase complex" evidence=IEA

GO:0030295 "protein kinase activator activity" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0019217 "regulation of fatty acid metabolic process" evidence=IEA

GO:0010800 "positive regulation of peptidyl-threonine phosphorylation" evidence=IEA

GO:0008607 "phosphorylase kinase regulator activity" evidence=IEA

GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=IEA

GO:0007243 "intracellular protein kinase cascade" evidence=IEA

GO:0006110 "regulation of glycolysis" evidence=IEA

GO:0005977 "glycogen metabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004862 "cAMP-dependent protein kinase inhibitor activity" evidence=IEA

MGI|MGI:108411 Prkag1 "protein kinase, AMP-activated, gamma 1 non-catalytic subunit" [Mus musculus (taxid:10090)]

 Score = 199 (75.1 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
 Identities = 62/184 (33%), Positives = 87/184 (47%)

Query:   149 SSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSAL 208
             +SF+ +H  Y+L+P S K+   D +L VK+AF  L   G+   PLWD  K  FVG+L+  
Sbjct:    29 TSFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTIT 88

Query:   209 DFILILRELGTNGSNLTE-EELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPY 267
             DFI IL       S L +  ELE H I  W+   LQ + K            PLV   P 
Sbjct:    89 DFINILHRYYK--SALVQIYELEEHKIETWREVYLQDSFK------------PLVCISPN 134

Query:   268 DSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHF---KHSSSSL 324
              SL +    +++NK+  +P+I     +G+   IL    +   LK     F   +  S SL
Sbjct:   135 ASLFDAVSSLIRNKIHRLPVIDPE--SGNTLYILTHKRILKFLKLFITEFPKPEFMSKSL 192

Query:   325 PILQ 328
               LQ
Sbjct:   193 QELQ 196

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0004672 "protein kinase activity" evidence=ISO

GO:0004679 "AMP-activated protein kinase activity" evidence=ISO;TAS

GO:0005524 "ATP binding" evidence=ISO

GO:0005634 "nucleus" evidence=IDA

GO:0006468 "protein phosphorylation" evidence=ISO;TAS

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0006950 "response to stress" evidence=TAS

GO:0010628 "positive regulation of gene expression" evidence=ISO

GO:0016208 "AMP binding" evidence=ISO

GO:0019901 "protein kinase binding" evidence=ISO

GO:0031588 "AMP-activated protein kinase complex" evidence=ISO

GO:0043234 "protein complex" evidence=ISO

GO:0043531 "ADP binding" evidence=ISO

GO:0050790 "regulation of catalytic activity" evidence=ISO

GO:0051291 "protein heterooligomerization" evidence=ISO

RGD|1308698 Prkag3 "protein kinase, AMP-activated, gamma 3 non-catalytic subunit" [Rattus norvegicus (taxid:10116)]

 Score = 205 (77.2 bits), Expect = 1.8e-15, Sum P(2) = 1.8e-15
 Identities = 56/191 (29%), Positives = 95/191 (49%)

Query:   151 FLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDF 210
             F+  HT Y+ +  S K+   D  L +K+AF  +   G+   PLWD  K  FVG+L+  DF
Sbjct:   187 FMQEHTCYDAMATSSKLVIFDTTLEIKKAFFAMVANGVRAAPLWDSKKQSFVGMLTITDF 246

Query:   211 ILILRELGTNGSNLTE-EELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDS 269
             IL+L       S L +  E+E H I  W+    ++ L+      G  C +PLV   P DS
Sbjct:   247 ILVLHRYYR--SPLVQIYEIEEHKIETWRGFSAEIYLQ------G--CFKPLVSISPNDS 296

Query:   270 LKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLP-ILQ 328
             L E    +++N++  +P++     +G+   +LY+ +   +LK +  H   +    P  L 
Sbjct:   297 LFEAVYALIKNRIHRLPVLDPV--SGT---VLYILTHKRLLKFL--HIFGALLPRPSFLC 349

Query:   329 QPVSSIQLGTW 339
             + +  + +GT+
Sbjct:   350 RTIQDLGIGTF 360

GO:0005978 "glycogen biosynthetic process" evidence=IEA;ISO

GO:0015758 "glucose transport" evidence=IEA;ISO

GO:0016301 "kinase activity" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA;ISO

GO:0031588 "AMP-activated protein kinase complex" evidence=IDA

GO:0004679 "AMP-activated protein kinase activity" evidence=IMP

RGD|3388 Prkag1 "protein kinase, AMP-activated, gamma 1 non-catalytic subunit" [Rattus norvegicus (taxid:10116)]

 Score = 198 (74.8 bits), Expect = 1.9e-15, Sum P(2) = 1.9e-15
 Identities = 64/203 (31%), Positives = 95/203 (46%)

Query:   130 PEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLP 189
             PE   ++S+   + +    ++F+ +H  Y+L+P S K+   D +L VK+AF  L   G+ 
Sbjct:    12 PEN--EHSQETPESNSSVYTTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVR 69

Query:   190 MVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTE-EELETHTISAWKVGKLQLNLKR 248
               PLWD  K  FVG+L+  DFI IL       S L +  ELE H I  W+   LQ + K 
Sbjct:    70 AAPLWDSKKQSFVGMLTITDFINILHRYYK--SALVQIYELEEHKIETWREVYLQDSFK- 126

Query:   249 QMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSD 308
                        PLV   P  SL +    +++NK+  +P+I     +G+   IL    +  
Sbjct:   127 -----------PLVCISPNASLFDAVSSLIRNKIHRLPVIDPE--SGNTLYILTHKRILK 173

Query:   309 ILKCICRHF---KHSSSSLPILQ 328
              LK     F   +  S SL  LQ
Sbjct:   174 FLKLFITEFPKPEFMSKSLEELQ 196

GO:0004672 "protein kinase activity" evidence=ISO

GO:0004679 "AMP-activated protein kinase activity" evidence=IMP;IDA;TAS

GO:0005524 "ATP binding" evidence=IDA

GO:0005634 "nucleus" evidence=ISO

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006468 "protein phosphorylation" evidence=ISO

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0006950 "response to stress" evidence=TAS

GO:0010628 "positive regulation of gene expression" evidence=ISO

GO:0016208 "AMP binding" evidence=IMP;IDA

GO:0019901 "protein kinase binding" evidence=ISO;IPI

GO:0031588 "AMP-activated protein kinase complex" evidence=IDA

GO:0043234 "protein complex" evidence=IDA

GO:0043531 "ADP binding" evidence=IDA

GO:0050790 "regulation of catalytic activity" evidence=IDA

GO:0051291 "protein heterooligomerization" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q944A6	SNF4_ARATH	No assigned EC number	0.7021	0.9671	0.8459	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	426
cd02859	80	cd02859, E_set_AMPKbeta_like_N, N-terminal Early s	2e-27
cd04618	98	cd04618, CBS_pair_5, The CBS domain, named after h	2e-20
cd04641	120	cd04641, CBS_pair_28, The CBS domain, named after	1e-19
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	1e-07
smart00116	49	smart00116, CBS, Domain in cystathionine beta-synt	2e-07
cd07184	86	cd07184, E_set_Isoamylase_like_N, N-terminal Early	3e-07
cd02688	82	cd02688, E_set, Early set domain associated with t	2e-06
pfam00571	57	pfam00571, CBS, CBS domain	1e-05
cd04802	112	cd04802, CBS_pair_3, The CBS domain, named after h	8e-05
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	1e-04
cd04601	110	cd04601, CBS_pair_IMPDH, This cd contains two tand	6e-04
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	0.001
cd04631	125	cd04631, CBS_pair_18, The CBS domain, named after	0.001
cd04612	111	cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd cont	0.002
cd04588	110	cd04588, CBS_pair_CAP-ED_DUF294_assoc_arch, This c	0.003
cd04593	115	cd04593, CBS_pair_EriC_assoc_bac_arch, This cd con	0.003
cd04621	135	cd04621, CBS_pair_8, The CBS domain, named after h	0.003
cd04635	122	cd04635, CBS_pair_22, The CBS domain, named after	0.004
cd04632	128	cd04632, CBS_pair_19, The CBS domain, named after	0.004

>gnl|CDD|199889 cd02859, E_set_AMPKbeta_like_N, N-terminal Early set domain, a glycogen binding domain, associated with the catalytic domain of AMP-activated protein kinase beta subunit

 Score =  103 bits (259), Expect = 2e-27
 Identities = 34/77 (44%), Positives = 46/77 (59%), Gaps = 3/77 (3%)

Query: 22 PVRFIWPN-GGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEW 80
          PV F WP  GG+ V ++GSF  W +P+P+  S      F     LPPG ++YKF VDGEW
Sbjct: 1  PVTFRWPGPGGKEVYVTGSFDNWQQPIPLEKSGDG--EFSATVELPPGRYEYKFIVDGEW 58

Query: 81 RHDENQPHVSGNYGVVN 97
           HD + P V+  +G +N
Sbjct: 59 VHDPDLPTVTDEFGNLN 75

E or "early" set domains are associated with the catalytic domain of AMP-activated protein kinase beta subunit glycogen binding domain at the N-terminal end. AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as an alpha-beta-gamma heterotrimer. This N-terminal domain is the glycogen binding domain of the beta subunit. This domain is also a member of the CBM48 (Carbohydrate Binding Module 48) family whose members include pullulanase, maltooligosyl trehalose synthase, starch branching enzyme, glycogen branching enzyme, glycogen debranching enzyme, and isoamylase. Length = 80

>gnl|CDD|239990 cd04618, CBS_pair_5, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 85.0 bits (211), Expect = 2e-20
 Identities = 44/147 (29%), Positives = 59/147 (40%), Gaps = 50/147 (34%)

Query: 165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNL 224
            K+   D  L VK+AF+ L E G+   PLWD  K +FVG+L+  DFILILR         
Sbjct: 1   SKLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILR--------- 51

Query: 225 TEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVAT 284
                                               LV   P  SL + AL +L+NK+  
Sbjct: 52  ------------------------------------LVSIHPERSLFDAALLLLKNKIHR 75

Query: 285 VPIIHSTGPAGSCQEILYLASLSDILK 311
           +P+I       S    LY+ +   ILK
Sbjct: 76  LPVIDP-----STGTGLYILTSRRILK 97

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 98

>gnl|CDD|240012 cd04641, CBS_pair_28, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 83.8 bits (208), Expect = 1e-19
 Identities = 25/62 (40%), Positives = 37/62 (59%)

Query: 349 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLD 408
           +  A  RP   L   L +LV+  VS++PIVD+N  ++D+YSR D+  LAK+ AY  + L 
Sbjct: 1   KNIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAKEGAYNNLDLT 60

Query: 409 EM 410
             
Sbjct: 61  VG 62

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 120

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 49.7 bits (119), Expect = 1e-07
 Identities = 27/135 (20%), Positives = 56/135 (41%), Gaps = 25/135 (18%)

Query: 259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK 318
           R +V   P D++ E    +L++ ++ +P++   G       ++ + +  D+L+ +     
Sbjct: 1   RDVVTVSPDDTVAEALRLMLEHGISGLPVVDDDG------RLVGIVTERDLLRALAEGGL 54

Query: 319 HSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIV 378
                                   +G+   R    + P  SL  A  L+++  +  +P+V
Sbjct: 55  DPL-------------------VTVGDVMTRDVVTVSPDTSLEEAAELMLEHGIRRLPVV 95

Query: 379 DDNDSLLDIYSRSDI 393
           DD   L+ I +RSDI
Sbjct: 96  DDEGRLVGIVTRSDI 110

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|214522 smart00116, CBS, Domain in cystathionine beta-synthase and other proteins

 Score = 47.1 bits (113), Expect = 2e-07
 Identities = 14/44 (31%), Positives = 23/44 (52%)

Query: 350 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDI 393
               + P  +L  AL LL +  +  +P+VD+   L+ I +R DI
Sbjct: 1   DVVTVSPDTTLEEALELLRENGIRRLPVVDEEGRLVGIVTRRDI 44

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease. Length = 49

>gnl|CDD|199892 cd07184, E_set_Isoamylase_like_N, N-terminal Early set domain associated with the catalytic domain of isoamylase-like (also called glycogen 6-glucanohydrolase) proteins

 Score = 47.6 bits (114), Expect = 3e-07
 Identities = 26/86 (30%), Positives = 35/86 (40%), Gaps = 10/86 (11%)

Query: 21 VPVRFIWPN--GGRRVSLSGSFTRWS-EPMPMSPS-EGCPAVFQIICRLPPG-HHQYKFY 75
            V F  P   G   VSL G F  W  +  PM     G    F     LP G  +Q+++ 
Sbjct: 1  CKVTFELPAEQGADSVSLVGDFNDWDPQATPMKKLKNG---TFSATLDLPAGREYQFRYL 57

Query: 76 VDGE-WRHDENQP-HVSGNYGVVNCV 99
          +DGE W +D     +    +G  N V
Sbjct: 58 IDGERWVNDPEADAYAPNGFGEENSV 83

E or "early" set domains are associated with the catalytic domain of isoamylase-like proteins at the N-terminal end. Isoamylase is one of the starch-debranching enzymes that catalyze the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminal domain of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase. This domain is also a member of the CBM48 (Carbohydrate Binding Module 48) family whose members include pullulanase, maltooligosyl trehalose synthase, starch branching enzyme, glycogen branching enzyme, glycogen debranching enzyme, and the beta subunit of AMP-activated protein kinase. Length = 86

>gnl|CDD|199878 cd02688, E_set, Early set domain associated with the catalytic domain of sugar utilizing enzymes at either the N or C terminus

 Score = 45.6 bits (108), Expect = 2e-06
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 5/66 (7%)

Query: 22 PVRF-IWPNGGRRVSLSGSFTRWSE--PMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDG 78
           V F I+  G + V L GSF  W +   +PM+ + G   V+     LP G ++YK+ +DG
Sbjct: 1  GVTFRIFAPGAKSVYLIGSFNGWWQAQALPMTKNGG--GVWSATIPLPLGTYEYKYVIDG 58

Query: 79 EWRHDE 84
                
Sbjct: 59 GKNVLP 64

The E or "early" set domains of sugar utilizing enzymes are associated with different types of catalytic domains at either the N-terminal or C-terminal end. These domains may be related to the immunoglobulin and/or fibronectin type III superfamilies. Members of this family include alpha amylase, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase. A subset of these members were recently identified as members of the CBM48 (Carbohydrate Binding Module 48) family. Members of the CBM48 family include pullulanase, maltooligosyl trehalose synthase, starch branching enzyme, glycogen branching enzyme, glycogen debranching enzyme, isoamylase, and the beta subunit of AMP-activated protein kinase. Length = 82

>gnl|CDD|201313 pfam00571, CBS, CBS domain

 Score = 42.2 bits (100), Expect = 1e-05
 Identities = 13/45 (28%), Positives = 24/45 (53%)

Query: 349 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDI 393
                + P  SL  AL L+ +  +S +P+VD++  L+ I +  D+
Sbjct: 7   PDVVTVPPDTSLEEALELMRENGISRLPVVDEDGKLVGIVTLRDL 51

CBS domains are small intracellular modules that pair together to form a stable globular domain. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain. CBS domains have been shown to bind ligands with an adenosyl group such as AMP, ATP and S-AdoMet. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role making proteins sensitive to adenosyl carrying ligands. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet. CBS domain pairs from AMPK bind AMP or ATP. The CBS domains from IMPDH and the chloride channel CLC2 bind ATP. Length = 57

>gnl|CDD|240115 cd04802, CBS_pair_3, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 41.6 bits (98), Expect = 8e-05
 Identities = 32/136 (23%), Positives = 57/136 (41%), Gaps = 26/136 (19%)

Query: 259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK 318
           + ++   P  ++ E A  + +N +  + ++ +  P G   E        D++K      K
Sbjct: 1   KNVITVDPDTTVYEAANIMTENNIGRLIVVDNEKPVGIITE-------RDLVK------K 47

Query: 319 HSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIV 378
             S +L   + PV            GE    P   + P ASL  A  L+ +  +  +P+V
Sbjct: 48  VVSRNLKPREVPV------------GEVMSTPLITIDPNASLNEAAKLMAKHGIKRLPVV 95

Query: 379 DDNDSLLDIYSRSDIT 394
           DD D L+ I + +DI 
Sbjct: 96  DD-DELVGIVTTTDIV 110

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 112

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 40.9 bits (96), Expect = 1e-04
 Identities = 17/69 (24%), Positives = 36/69 (52%), Gaps = 1/69 (1%)

Query: 349 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT-ALAKDKAYAQIHL 407
           R    + P  ++  AL L+++  +S +P+VDD+  L+ I +  D+  ALA+      + +
Sbjct: 1   RDVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGGLDPLVTV 60

Query: 408 DEMNIHQVI 416
            ++    V+
Sbjct: 61  GDVMTRDVV 69

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239974 cd04601, CBS_pair_IMPDH, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

 Score = 38.6 bits (91), Expect = 6e-04
 Identities = 13/40 (32%), Positives = 25/40 (62%)

Query: 354 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDI 393
           + P A++  AL L+ +  +S +P+VDD+  L+ I +  D+
Sbjct: 7   VSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDL 46

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa. Length = 110

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 38.6 bits (90), Expect = 0.001
 Identities = 30/146 (20%), Positives = 59/146 (40%), Gaps = 35/146 (23%)

Query: 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLT 225
            V  +  +  V +A  ++ E G+  +P+ DD  GR VG+++  D +  L E G +     
Sbjct: 2   DVVTVSPDDTVAEALRLMLEHGISGLPVVDD-DGRLVGIVTERDLLRALAEGGLDPLVTV 60

Query: 226 EEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATV 285
            + +                             R +V   P  SL+E A  +L++ +  +
Sbjct: 61  GDVMT----------------------------RDVVTVSPDTSLEEAAELMLEHGIRRL 92

Query: 286 PIIHSTGPAGSCQEILYLASLSDILK 311
           P++   G       ++ + + SDIL+
Sbjct: 93  PVVDDEG------RLVGIVTRSDILR 112

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|240002 cd04631, CBS_pair_18, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 38.4 bits (90), Expect = 0.001
 Identities = 29/136 (21%), Positives = 57/136 (41%), Gaps = 21/136 (15%)

Query: 262 VQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRH--FKH 319
           V   P   + E A  +++N    +P++          +++ + + +DILK +     F  
Sbjct: 4   VTVPPTTPIMEAAKIMVRNGFRRLPVVDE-----GTGKLVGIITATDILKYLGGGEKFNK 58

Query: 320 SSS--SLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPI 377
             +   L  + +PV SI              R    + P  S+  A  L+++  V  +P+
Sbjct: 59  IKTGNGLEAINEPVRSIMT------------RNVITITPDDSIKDAAELMLEKRVGGLPV 106

Query: 378 VDDNDSLLDIYSRSDI 393
           VDD+  L+ I +  D+
Sbjct: 107 VDDDGKLVGIVTERDL 122

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 125

>gnl|CDD|239985 cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 37.2 bits (87), Expect = 0.002
 Identities = 17/53 (32%), Positives = 28/53 (52%)

Query: 341 PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDI 393
             +G+   R      P  +L  AL  + + D+  +P+VDD+  L+ I SRSD+
Sbjct: 56  VLVGDVMTRDPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDL 108

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|239961 cd04588, CBS_pair_CAP-ED_DUF294_assoc_arch, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

 Score = 36.9 bits (86), Expect = 0.003
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 349 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT-ALAKDKAYAQI 405
           +P   L P A+L  A  L     +   P+VDD   L+ I + SDI  A+A+    A++
Sbjct: 1   KPLITLNPNATLREAARLFNTHHIHGAPVVDDGK-LVGIVTLSDIAHAIARGLELAKV 57

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|239966 cd04593, CBS_pair_EriC_assoc_bac_arch, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

 Score = 37.0 bits (86), Expect = 0.003
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 354 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT-ALAKDKAYAQIHLDEMN 411
           L  T  L  A   L+++   S  +VD +  ++ I +  D+  AL  D+A     +DE+ 
Sbjct: 6   LSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALEADEAGEPSAVDEVA 64

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in CLC chloride channel family members have been associated with classic Bartter syndrome, Osteopetrosis, Dent's disease, idiopathic generalized epilepsy, and myotonia. Length = 115

>gnl|CDD|239993 cd04621, CBS_pair_8, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 37.4 bits (87), Expect = 0.003
 Identities = 12/45 (26%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 349 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDI 393
                + P   +  A  L+++A++S +P+V DND+++ + +++DI
Sbjct: 89  EEIITVSPNDDVVDAAKLMLEANISGLPVV-DNDNIVGVITKTDI 132

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 135

>gnl|CDD|240006 cd04635, CBS_pair_22, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 36.7 bits (85), Expect = 0.004
 Identities = 13/44 (29%), Positives = 27/44 (61%)

Query: 350 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDI 393
           P   + P  S+ +A+ L+++ D+  +P+V++ D L+ I  R D+
Sbjct: 76  PVYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDV 119

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|240003 cd04632, CBS_pair_19, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 37.1 bits (86), Expect = 0.004
 Identities = 16/40 (40%), Positives = 25/40 (62%)

Query: 354 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDI 393
           +R   S+G A+ +L +  +S +P+VDDN  L  I +R DI
Sbjct: 6   VREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDI 45

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 128

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	426
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	99.94
cd02859	79	AMPKbeta_GBD_like AMP-activated protein kinase (AM	99.92
COG3448	382	CBS-domain-containing membrane protein [Signal tra	99.9
cd02861	82	E_set_proteins_like E or "early" set-like proteins	99.78
KOG1616	289	consensus Protein involved in Snf1 protein kinase	99.69
COG3448	382	CBS-domain-containing membrane protein [Signal tra	99.67
COG2524	294	Predicted transcriptional regulator, contains C-te	99.66
COG2524	294	Predicted transcriptional regulator, contains C-te	99.63
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	99.57
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	99.57
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	99.55
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	99.53
PRK14869	546	putative manganese-dependent inorganic pyrophospha	99.53
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	99.51
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	99.5
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	99.48
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	99.48
COG3620	187	Predicted transcriptional regulator with C-termina	99.46
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	99.44
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	99.44
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	99.42
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	99.42
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	99.41
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	99.41
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	99.41
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	99.41
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	99.41
COG3620	187	Predicted transcriptional regulator with C-termina	99.4
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	99.39
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	99.39
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	99.38
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	99.38
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	99.38
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	99.37
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	99.37
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	99.37
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	99.37
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	99.36
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	99.36
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	99.36
COG2905	610	Predicted signal-transduction protein containing c	99.35
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	99.35
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	99.35
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	99.35
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	99.35
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	99.35
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	99.34
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	99.33
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	99.33
COG0517	117	FOG: CBS domain [General function prediction only]	99.33
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	99.33
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	99.33
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	99.33
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	99.33
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	99.33
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	99.32
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	99.32
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	99.32
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	99.32
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	99.32
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	99.31
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	99.31
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	99.31
PLN02274	505	inosine-5'-monophosphate dehydrogenase	99.31
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	99.31
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	99.3
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	99.3
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	99.3
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	99.3
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	99.3
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	99.3
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	99.3
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	99.3
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	99.29
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	99.29
cd02858	85	Esterase_N_term Esterase N-terminal domain. Estera	99.29
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	99.28
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	99.28
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	99.27
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	99.27
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	99.26
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	99.26
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	99.26
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	99.24
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	99.22
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	99.22
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	99.22
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	99.21
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	99.21
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	99.21
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	99.21
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	99.2
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	99.2
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	99.19
PRK01862	574	putative voltage-gated ClC-type chloride channel C	99.19
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	99.19
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	99.19
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	99.19
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	99.19
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	99.18
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	99.18
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	99.18
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	99.17
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	99.17
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	99.17
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	99.17
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	99.16
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	99.16
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	99.15
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	99.15
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	99.15
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	99.15
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	99.15
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	99.15
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	99.15
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	99.14
COG2905	610	Predicted signal-transduction protein containing c	99.14
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	99.14
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	99.14
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	99.14
PRK01862	574	putative voltage-gated ClC-type chloride channel C	99.13
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	99.13
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	99.13
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	99.13
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	99.13
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	99.12
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	99.12
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	99.11
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	99.11
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	99.11
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	99.11
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	99.11
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	99.1
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	99.09
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	99.09
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	99.09
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	99.08
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	99.08
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	99.08
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	99.07
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	99.07
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	99.06
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	99.06
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	99.06
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	99.06
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	99.05
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	99.04
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	99.04
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	99.04
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	99.04
COG0517	117	FOG: CBS domain [General function prediction only]	99.03
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	99.03
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	99.03
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	99.03
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	99.03
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	99.02
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	99.02
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	99.01
PLN02274	505	inosine-5'-monophosphate dehydrogenase	99.01
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	99.0
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	99.0
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	99.0
COG4109	432	Predicted transcriptional regulator containing CBS	98.99
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	98.97
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	98.97
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	98.97
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	98.97
PRK11573	413	hypothetical protein; Provisional	98.97
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	98.97
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	98.96
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	98.96
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	98.96
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	98.95
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	98.89
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	98.89
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	98.87
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	98.8
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	98.8
COG4109	432	Predicted transcriptional regulator containing CBS	98.79
cd02688	83	E_set E or "early" set of sugar utilizing enzymes	98.76
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	98.69
cd02854	99	Glycogen_branching_enzyme_like_N_term Glycogen bra	98.67
COG1253	429	TlyC Hemolysins and related proteins containing CB	98.66
PRK11573	413	hypothetical protein; Provisional	98.64
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	98.58
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	98.56
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	98.54
COG1253	429	TlyC Hemolysins and related proteins containing CB	98.46
PF02922	85	CBM_48: Carbohydrate-binding module 48 (Isoamylase	98.42
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	98.4
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	98.38
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	98.22
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	98.18
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	98.06
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	98.05
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	98.05
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	98.04
COG0296	628	GlgB 1,4-alpha-glucan branching enzyme [Carbohydra	97.95
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	97.89
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	97.85
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	97.82
cd05808	95	CBM20_alpha_amylase Alpha-amylase, C-terminal CBM2	97.8
PF00686	96	CBM_20: Starch binding domain; InterPro: IPR002044	97.8
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	97.74
cd02860	100	Pullulanase_N_term Pullulanase domain N-terminus.	97.7
cd02855	106	Glycogen_branching_enzyme_N_term Glycogen branchin	97.67
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	97.65
PRK14869	546	putative manganese-dependent inorganic pyrophospha	97.65
cd05818	92	CBM20_water_dikinase Phosphoglucan water dikinase	97.58
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	97.57
cd05814	120	CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-	97.52
cd05809	99	CBM20_beta_amylase Beta-amylase, C-terminal CBM20	97.45
PLN02447	758	1,4-alpha-glucan-branching enzyme	97.36
PRK12568	730	glycogen branching enzyme; Provisional	97.34
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	97.34
KOG0475	696	consensus Cl- channel CLC-3 and related proteins (	97.33
cd05820	103	CBM20_novamyl Novamyl (also known as acarviose tra	97.29
cd02856	103	Glycogen_debranching_enzyme_N_term Glycogen_debran	97.28
cd05813	95	CBM20_genethonin_1 Genethonin-1, C-terminal CBM20	97.16
PRK12313	633	glycogen branching enzyme; Provisional	97.13
PRK14706	639	glycogen branching enzyme; Provisional	97.06
PRK14705	1224	glycogen branching enzyme; Provisional	97.04
cd05811	106	CBM20_glucoamylase Glucoamylase (glucan1,4-alpha-g	97.03
cd05817	100	CBM20_DSP Dual-specificity phosphatase (DSP), N-te	96.99
PRK05402	726	glycogen branching enzyme; Provisional	96.98
cd05816	99	CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DP	96.86
cd05807	101	CBM20_CGTase CGTase, C-terminal CBM20 (carbohydrat	96.85
cd05467	96	CBM20 The family 20 carbohydrate-binding module (C	96.77
cd02853	85	MTHase_N_term Maltooligosyl trehalose synthase (MT	96.71
KOG0475	696	consensus Cl- channel CLC-3 and related proteins (	96.67
cd05810	97	CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrol	96.6
cd02852	119	Isoamylase_N_term Isoamylase N-terminus domain. Is	96.59
TIGR02402	542	trehalose_TreZ malto-oligosyltrehalose trehalohydr	96.38
PRK05402	726	glycogen branching enzyme; Provisional	96.18
TIGR01515	613	branching_enzym alpha-1,4-glucan:alpha-1,4-glucan	96.15
cd05806	112	CBM20_laforin Laforin protein tyrosine phosphatase	95.76
cd05815	101	CBM20_DPE2_repeat1 Disproportionating enzyme 2 (DP	95.67
PF11806	122	DUF3327: Domain of unknown function (DUF3327); Int	95.52
TIGR02104	605	pulA_typeI pullulanase, type I. Pullulan is an unu	94.81
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	94.22
PF03423	87	CBM_25: Carbohydrate binding domain (family 25); I	94.17
PLN02316	1036	synthase/transferase	94.0
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	93.88
PLN02950	909	4-alpha-glucanotransferase	93.67
PLN02950	909	4-alpha-glucanotransferase	93.55
TIGR02100	688	glgX_debranch glycogen debranching enzyme GlgX. Th	92.32
PRK10439	411	enterobactin/ferric enterobactin esterase; Provisi	92.24
PLN02316	1036	synthase/transferase	91.47
TIGR02102	1111	pullulan_Gpos pullulanase, extracellular, Gram-pos	91.28
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	91.25
TIGR02103	898	pullul_strch alpha-1,6-glucosidases, pullulanase-t	89.83
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	89.48
PRK03705	658	glycogen debranching enzyme; Provisional	89.15
PLN02960	897	alpha-amylase	89.14
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	87.35
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	86.99
KOG0476	931	consensus Cl- channel CLC-2 and related proteins (	81.86
cd02857	116	CD_pullulan_degrading_enzymes_N_term CD and pullul	80.96

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=99.94  E-value=1.8e-25  Score=222.48  Aligned_cols=250  Identities=30%  Similarity=0.544  Sum_probs=207.4

Q ss_pred             HHHHHHHHhccccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCC
Q 014342          144 SRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSN  223 (426)
Q Consensus       144 ~~~~~~~~l~~~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~  223 (426)
                      ....+.+|+..++||+++|.+.+++.+|..+++.+|+.+|..++++++||||....+++|+++..||+.++..++.....
T Consensus        55 ~~~~~~~~~~~~~~~~~~p~~~~l~~~d~~~~v~~a~~~l~~~~~~~~p~~~~~~~~~~g~~~~~d~i~~~~~~~~~~~~  134 (381)
T KOG1764|consen   55 AVDTLSKFMKSHTCYDLLPTSSKLVVFDTKLSVKKAFNALVQNGVRAAPLWDSKKQQFVGMLTITDFITVLLRYYKSKSS  134 (381)
T ss_pred             hhHHHHHHHhccCcccccCCcceeEEeeCCCcHHHHHHHHHhhceeeeccccCccceeEEEEEHHHHHHHHHHhhccCCc
Confidence            56789999999999999999999999999999999999999999999999999889999999999999998877764211


Q ss_pred             C-ChhhhcccchhhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEE
Q 014342          224 L-TEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILY  302 (426)
Q Consensus       224 ~-~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvG  302 (426)
                      . ..+.+....+..++.......         ....++++.+.|..++.+++..+.++++|++||+|  .+.+   ++++
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d--~~~~---~v~~  200 (381)
T KOG1764|consen  135 LDNIEVLEDSQLSKRREVECLLK---------ETLKPPFVSISPESSLLDAVLLLIKSRIHRVPVID--PETG---EVLY  200 (381)
T ss_pred             HHHHhhhhhhhccccchhhhhhc---------cccCCCceeecCcHHHHHHHHHHHhCCccceeeec--cccc---ceee
Confidence            1 112222222222322211100         01134449999999999999999999999999996  3456   7999


Q ss_pred             EecHHhHHHHHHhhccccCCCccccccccccccccccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCC
Q 014342          303 LASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDND  382 (426)
Q Consensus       303 iit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g  382 (426)
                      ++|++.|++++..+...++ ...++..++.++.+|+|.         ++..+..++++.+|+++|.+.+++++||||+.|
T Consensus       201 ilt~~rIl~~l~~~~~~~~-~~~~l~~s~~dl~ig~~~---------~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g  270 (381)
T KOG1764|consen  201 ILTQRRILKFLWLNGRLLP-LPSLLSKSLSDLGIGTWS---------NIASISEDTPVIEALKIMSERRISALPVVDENG  270 (381)
T ss_pred             ehhHHHHHHHHHHhhcccc-cHHHhhCCHHHhCcchhh---------hheeecCCCcHHHHHHHHHhcCcCcceEEcCCC
Confidence            9999999999998877655 246889999999999984         789999999999999999999999999999999


Q ss_pred             cEEEEEeHHHHHHHHhccccccCCCCCcc-HHHHHHHHH
Q 014342          383 SLLDIYSRSDITALAKDKAYAQIHLDEMN-IHQVIARFL  420 (426)
Q Consensus       383 ~lvGiis~~DI~~~~~~~~~~~l~~~~~~-v~~~l~~~~  420 (426)
                      +.+|++++.|++.++..+.|..++   .+ +.+++....
T Consensus       271 ~~v~~~s~~Dv~~l~~~~~~~~~~---~~~l~~~~~~~~  306 (381)
T KOG1764|consen  271 KKVGNYSRFDVIHLAREGTYNNLD---LSCLSEALSHRP  306 (381)
T ss_pred             ceecceehhhhhhhhhcCccCccc---hhHHHHHhhhcc
Confidence            999999999999999999999986   66 777776543

>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD)

Probab=99.92  E-value=4.1e-25  Score=171.62  Aligned_cols=79  Identities=46%  Similarity=0.944  Sum_probs=74.0

Q ss_pred             ceEEEEEecCCCceEEEEeccCCCCCCCCCCCCCCCCCeEEEEEecCCceEEEEEEEcCeeecCCCCCeeeCCCCCeeeE
Q 014342           20 LVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCV   99 (426)
Q Consensus        20 ~~~v~f~~~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~L~~g~y~ykFiVDg~w~~d~~~p~~~d~~G~~nn~   99 (426)
                      .+||+|+|+++|++|+|+|+|+||++..||.+.+  ++ |++++.||||.|+|||+|||.|.+||++|++.|++|+.||+
T Consensus         1 ~~~v~f~~~~~a~~V~v~G~F~~W~~~~pm~~~~--~~-~~~~~~L~~g~y~YkF~Vdg~w~~d~~~~~~~d~~G~~NN~   77 (79)
T cd02859           1 MVPTTFVWPGGGKEVYVTGSFDNWKKKIPLEKSG--KG-FSATLRLPPGKYQYKFIVDGEWRHSPDLPTETDDEGNVNNV   77 (79)
T ss_pred             CeEEEEEEcCCCcEEEEEEEcCCCCccccceECC--CC-cEEEEEcCCCCEEEEEEECCEEEeCCCCCccCCCCCcEeee
Confidence            4799999999999999999999999878999875  34 99999999999999999999999999999999999999999


Q ss_pred             EE
Q 014342          100 YI  101 (426)
Q Consensus       100 ~~  101 (426)
                      |.
T Consensus        78 i~   79 (79)
T cd02859          78 ID   79 (79)
T ss_pred             EC
Confidence            84

AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=99.90  E-value=1.2e-23  Score=194.06  Aligned_cols=167  Identities=17%  Similarity=0.328  Sum_probs=139.8

Q ss_pred             CcccccccccCCCCccccHHHHHH-----HHHHHHHHhccccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeee
Q 014342          120 NMEVDDVVMRPEGFAQYSEADLQL-----SRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLW  194 (426)
Q Consensus       120 ~~d~~~~l~~~~~~~~~~~~~l~~-----~~~~~~~~l~~~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~  194 (426)
                      .-|++++|+++++.+||+++|||+     +++++++.+++.||+|+|++  .|+++.++.++.+|+++|.+|+++++||+
T Consensus       205 ~~Dld~aL~~~~E~lDIdrddLe~llr~~elqa~~R~~~~LtcadIMSr--dVvtv~~~ts~dhA~~ll~~H~ikaLPV~  282 (382)
T COG3448         205 SEDLDAALQRLGETLDIDRDDLERLLRETELQALRRRMGELTCADIMSR--DVVTVSTDTSIDHARKLLQEHRIKALPVL  282 (382)
T ss_pred             HHHHHHHHHhcCceecCCHHHHHHHHHHHHHHHHHHHhccccHHHhcCc--cceecCCcCChHHHHHHHHHcCccccccc
Confidence            668899999999999999999988     89999999999999999988  68999999999999999999999999999


Q ss_pred             eCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHH
Q 014342          195 DDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVA  274 (426)
Q Consensus       195 D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~  274 (426)
                      |+. .+++||+|.+|+++....     .+          .+.++    ..    .+++...+|+.++.++.|+++..+++
T Consensus       283 d~~-~rl~GiVt~~dl~~~a~~-----~p----------~qrlr----~~----~~~~vk~imt~~v~tv~pdtpa~~lv  338 (382)
T COG3448         283 DEH-RRLVGIVTQRDLLKHARP-----SP----------FQRLR----FL----RPPTVKGIMTTPVVTVRPDTPAVELV  338 (382)
T ss_pred             ccc-cceeeeeeHHHHhhccCc-----ch----------HHHhh----cc----CCCcccccccCcceeecCCCcHHHHH
Confidence            964 699999999998763221     00          01111    00    01112225788999999999999999


Q ss_pred             HHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhcc
Q 014342          275 LKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK  318 (426)
Q Consensus       275 ~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~  318 (426)
                      ..+.+.+.|++||+|   +.|   +++|||||+|++..++++..
T Consensus       339 p~lad~g~H~lpvld---~~g---~lvGIvsQtDliaal~r~~~  376 (382)
T COG3448         339 PRLADEGLHALPVLD---AAG---KLVGIVSQTDLIAALYRNWS  376 (382)
T ss_pred             HHhhcCCcceeeEEc---CCC---cEEEEeeHHHHHHHHHHHHH
Confidence            999999999999995   346   79999999999999987643

>cd02861 E_set_proteins_like E or "early" set-like proteins

Probab=99.78  E-value=6.9e-19  Score=137.94  Aligned_cols=77  Identities=38%  Similarity=0.747  Sum_probs=69.5

Q ss_pred             eEEEEEecCC-CceEEEEeccCCCCCCCCCCCCCCCCCeEEEEEecCCceEEEEEEEcCeee-cCCCCCe-eeCCCCCee
Q 014342           21 VPVRFIWPNG-GRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWR-HDENQPH-VSGNYGVVN   97 (426)
Q Consensus        21 ~~v~f~~~~~-~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~L~~g~y~ykFiVDg~w~-~d~~~p~-~~d~~G~~n   97 (426)
                      ++++|+|.++ +++|+|+|+||+|+. .+|.+.+  +|.|+++++|+||.|+|||+|||.|. +||.++. ..|..|+.|
T Consensus         2 ~~vtf~~~ap~a~~V~v~G~fn~W~~-~~m~~~~--~G~w~~~~~l~~G~y~Ykf~vdg~~~~~DP~~~~~~~~~~g~~n   78 (82)
T cd02861           2 VPVVFAYRGPEADSVYLAGSFNNWNA-IPMEREG--DGLWVVTVELRPGRYEYKFVVDGEWVIVDPNAAAYVDDGFGGKN   78 (82)
T ss_pred             ccEEEEEECCCCCEEEEEeECCCCCc-ccCEECC--CCcEEEEEeCCCCcEEEEEEECCEEeeCCCCCCceecCCCCccc
Confidence            5899999986 599999999999984 7898864  69999999999999999999999998 9999985 678899999


Q ss_pred             eEE
Q 014342           98 CVY  100 (426)
Q Consensus        98 n~~  100 (426)
                      |+|
T Consensus        79 ~v~   81 (82)
T cd02861          79 AVF   81 (82)
T ss_pred             eEc
Confidence            987

These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>KOG1616 consensus Protein involved in Snf1 protein kinase complex assembly [Carbohydrate transport and metabolism]

Probab=99.69  E-value=5e-17  Score=155.99  Aligned_cols=90  Identities=36%  Similarity=0.676  Sum_probs=82.7

Q ss_pred             CCCCcceEEEEEecCCCceEEEEeccCCCCCCCCCCCCCCCCCeEEEEEecCCceEEEEEEEcCeeecCCCCCeeeCCCC
Q 014342           15 VVGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYG   94 (426)
Q Consensus        15 ~~~~~~~~v~f~~~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~L~~g~y~ykFiVDg~w~~d~~~p~~~d~~G   94 (426)
                      .......+++|+|.++++.|+|+|+|.||...+++.+.....|.|+.++.||+|.|+|||+|||+|++|++.|++.|..|
T Consensus        74 ~~~~~~~pvvi~W~~gg~~v~v~gS~~nWk~~~~l~~~~~~~~~f~~~~dL~~g~~~~kf~vdge~~~s~~~pta~d~~G  153 (289)
T KOG1616|consen   74 KDREQGRPTVIRWSQGGKEVYVDGSFGNWKTKIPLVRSGKNVGGFSTILDLPPGEHEYKFIVDGEWRHDPDLPTAEDSLG  153 (289)
T ss_pred             cccccCCceEEEecCCCceEEEecccccccccccceecCCCcccceeeEecCCceEEEEEecCCceecCCCCcccccccC
Confidence            35566899999999999999999999999999999987655556999999999999999999999999999999999999


Q ss_pred             CeeeEEEecc
Q 014342           95 VVNCVYIAVP  104 (426)
Q Consensus        95 ~~nn~~~v~~  104 (426)
                      +.||++.|.+
T Consensus       154 n~~N~i~v~~  163 (289)
T KOG1616|consen  154 NLNNILEVQD  163 (289)
T ss_pred             CcccceEecC
Confidence            9999999943

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=99.67  E-value=7e-16  Score=142.97  Aligned_cols=175  Identities=17%  Similarity=0.261  Sum_probs=125.1

Q ss_pred             cEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhh-hHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHH
Q 014342          200 RFVGVLSALDFILILRELGTNGSNLTEEELETHTISA-WKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKIL  278 (426)
Q Consensus       200 ~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~-~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~  278 (426)
                      +-+| ++..|+...++.+.+.. .++.++++....+. +....+..++..|-++    |+++++++.+++++.+|.+.|.
T Consensus       199 ~rvg-fs~~Dld~aL~~~~E~l-DIdrddLe~llr~~elqa~~R~~~~LtcadI----MSrdVvtv~~~ts~dhA~~ll~  272 (382)
T COG3448         199 QRVG-FSSEDLDAALQRLGETL-DIDRDDLERLLRETELQALRRRMGELTCADI----MSRDVVTVSTDTSIDHARKLLQ  272 (382)
T ss_pred             hccC-CCHHHHHHHHHhcCcee-cCCHHHHHHHHHHHHHHHHHHHhccccHHHh----cCccceecCCcCChHHHHHHHH
Confidence            4467 78899988888765433 23445555432221 2222233333455554    8999999999999999999999


Q ss_pred             hCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccccccccccccCCCCCCCeEEEcCCC
Q 014342          279 QNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTA  358 (426)
Q Consensus       279 ~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~~~~~~~~~~~v~tv~~~~  358 (426)
                      +++++.+||+|  ++ .   +++||+|++|+++......          -+.++.+    ..+.+...|+.++.|+.+++
T Consensus       273 ~H~ikaLPV~d--~~-~---rl~GiVt~~dl~~~a~~~p----------~qrlr~~----~~~~vk~imt~~v~tv~pdt  332 (382)
T COG3448         273 EHRIKALPVLD--EH-R---RLVGIVTQRDLLKHARPSP----------FQRLRFL----RPPTVKGIMTTPVVTVRPDT  332 (382)
T ss_pred             HcCcccccccc--cc-c---ceeeeeeHHHHhhccCcch----------HHHhhcc----CCCcccccccCcceeecCCC
Confidence            99999999996  23 3   6999999999987422110          0011100    00122334457999999999


Q ss_pred             CHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHhcc
Q 014342          359 SLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDK  400 (426)
Q Consensus       359 ~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~~~  400 (426)
                      +..+.+-++.+.+.+++||+|++|+++||||.+|++..+...
T Consensus       333 pa~~lvp~lad~g~H~lpvld~~g~lvGIvsQtDliaal~r~  374 (382)
T COG3448         333 PAVELVPRLADEGLHALPVLDAAGKLVGIVSQTDLIAALYRN  374 (382)
T ss_pred             cHHHHHHHhhcCCcceeeEEcCCCcEEEEeeHHHHHHHHHHH
Confidence            999999999999999999999999999999999999865443

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=99.66  E-value=7.3e-16  Score=140.50  Aligned_cols=115  Identities=23%  Similarity=0.357  Sum_probs=101.0

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccc
Q 014342          256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  335 (426)
Q Consensus       256 ~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~  335 (426)
                      .|+++++++.+++|+.+|+++|.++++++.||+|+    +   +++|++|.+||.+.++...         +...|.++|
T Consensus       177 ~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~----d---k~vGiit~~dI~~aia~g~---------~~~kV~~~M  240 (294)
T COG2524         177 LMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDD----D---KIVGIITLSDIAKAIANGN---------LDAKVSDYM  240 (294)
T ss_pred             hccCCceEecCCccHHHHHHHHHHcCccCCceecC----C---ceEEEEEHHHHHHHHHcCC---------ccccHHHHh
Confidence            47899999999999999999999999999999952    3   5999999999999987531         234455444


Q ss_pred             ccccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHh
Q 014342          336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  398 (426)
Q Consensus       336 i~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~  398 (426)
                                  .++++|+.+|+.+++|+++|..+++++|.|+|.+|+.+|+||++||+..+.
T Consensus       241 ------------~k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~ia  291 (294)
T COG2524         241 ------------RKNVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRIA  291 (294)
T ss_pred             ------------ccCCceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHHHHHHhh
Confidence                        478999999999999999999999999999999999999999999998654

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=99.63  E-value=3.1e-15  Score=136.41  Aligned_cols=121  Identities=18%  Similarity=0.325  Sum_probs=101.2

Q ss_pred             cccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccc
Q 014342          154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHT  233 (426)
Q Consensus       154 ~~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~  233 (426)
                      ..++.++|++  ++++++++.|+++|.++|++++|+.+||+|.  ++++|++|.+|+.+.+......           .+
T Consensus       171 k~~V~~~~s~--~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~--dk~vGiit~~dI~~aia~g~~~-----------~k  235 (294)
T COG2524         171 KEKVKNLMSK--KLITVRPDDTLREAAKLFYEKGIRGAPVVDD--DKIVGIITLSDIAKAIANGNLD-----------AK  235 (294)
T ss_pred             cchhhhhccC--CceEecCCccHHHHHHHHHHcCccCCceecC--CceEEEEEHHHHHHHHHcCCcc-----------cc
Confidence            3556677766  8999999999999999999999999999985  3899999999999887643110           01


Q ss_pred             hhhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHH
Q 014342          234 ISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCI  313 (426)
Q Consensus       234 i~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l  313 (426)
                      .+.                   .|++.++++..|+.++||+++|.++++.||.|+|+   .|   +.+|++|+.|||+.+
T Consensus       236 V~~-------------------~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds---~g---kpvGiITrTDIL~~i  290 (294)
T COG2524         236 VSD-------------------YMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTDS---NG---KPVGIITRTDILTRI  290 (294)
T ss_pred             HHH-------------------HhccCCceEcCchhHHHHHHHHHhcCcceEEEEcc---CC---cEEEEEehHHHHHHh
Confidence            111                   25789999999999999999999999999999962   35   699999999999987


Q ss_pred             H
Q 014342          314 C  314 (426)
Q Consensus       314 ~  314 (426)
                      +
T Consensus       291 a  291 (294)
T COG2524         291 A  291 (294)
T ss_pred             h
Confidence            5

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.57  E-value=2.6e-14  Score=115.84  Aligned_cols=96  Identities=45%  Similarity=0.735  Sum_probs=84.0

Q ss_pred             cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhc
Q 014342          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (426)
Q Consensus       166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~  245 (426)
                      ++++++++.|+.+|++.|.++++.++||+|+++++++|++|..|+...+                               
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~-------------------------------   50 (98)
T cd04618           2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILIL-------------------------------   50 (98)
T ss_pred             eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhe-------------------------------
Confidence            6889999999999999999999999999996557999999999975321                               


Q ss_pred             cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (426)
Q Consensus       246 ~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~  311 (426)
                                  .  ++++.|++++.+|++.|.+++++++||+++  ++|   +++|++|.+|+++
T Consensus        51 ------------~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--~~~---~~~giit~~d~~~   97 (98)
T cd04618          51 ------------R--LVSIHPERSLFDAALLLLKNKIHRLPVIDP--STG---TGLYILTSRRILK   97 (98)
T ss_pred             ------------e--eEEeCCCCcHHHHHHHHHHCCCCEeeEEEC--CCC---CceEEeehhhhhc
Confidence                        1  467899999999999999999999999963  235   7999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.57  E-value=3.1e-14  Score=115.37  Aligned_cols=95  Identities=19%  Similarity=0.309  Sum_probs=83.7

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccccccc
Q 014342          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (426)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  339 (426)
                      .++++.+++++.+|++.|.+++++++||+++  ++|   +++|++|..|+++.+.                         
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~--~~~---~~~Givt~~Dl~~~~~-------------------------   51 (98)
T cd04618           2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDS--RKQ---QFVGMLTITDFILILR-------------------------   51 (98)
T ss_pred             eEEEECCCCcHHHHHHHHHHcCCceEEEEeC--CCC---EEEEEEEHHHHhhhee-------------------------
Confidence            3678999999999999999999999999962  235   7999999999876311                         


Q ss_pred             ccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCC-CcEEEEEeHHHHHH
Q 014342          340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITA  395 (426)
Q Consensus       340 ~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~-g~lvGiis~~DI~~  395 (426)
                                 +.++.+++++.+|+++|.+++++++||+|++ |+++|++|.+||+.
T Consensus        52 -----------~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~   97 (98)
T cd04618          52 -----------LVSIHPERSLFDAALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK   97 (98)
T ss_pred             -----------eEEeCCCCcHHHHHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence                       3479999999999999999999999999987 99999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.55  E-value=9e-14  Score=116.33  Aligned_cols=118  Identities=22%  Similarity=0.282  Sum_probs=91.3

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccccccc
Q 014342          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (426)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  339 (426)
                      +++++.+++++.+|++.|.+++++++||+++   +|   +++|+++..|+++++..+...      ....++.+.+.   
T Consensus         2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~---~~---~~~Giv~~~dl~~~~~~~~~~------~~~~~~~~~~~---   66 (120)
T cd04641           2 NIATARPDTPLIDVLDMLVERRVSALPIVDE---NG---KVVDVYSRFDVINLAKEGAYN------NLDLTVGEALE---   66 (120)
T ss_pred             CcEEEcCCCCHHHHHHHHHHcCCCeeeEECC---CC---eEEEEEeHHHHHHHHhcCccc------cccCCHHHHHh---
Confidence            5688999999999999999999999999952   45   799999999999875433111      00111111100   


Q ss_pred             ccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342          340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (426)
Q Consensus       340 ~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~  395 (426)
                         ....+.+++.++.+++++.+|+++|.+++++.+||+|++|+++|+||++|+++
T Consensus        67 ---~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~~  119 (120)
T cd04641          67 ---RRSQDFEGVRTCSPDDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDILQ  119 (120)
T ss_pred             ---hcccCCCCCeEEcCCCcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhhc
Confidence               01112356789999999999999999999999999998899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=99.53  E-value=4.1e-13  Score=134.11  Aligned_cols=199  Identities=16%  Similarity=0.168  Sum_probs=149.1

Q ss_pred             CcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhh
Q 014342          165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL  244 (426)
Q Consensus       165 ~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~  244 (426)
                      ...+.+.+..++.+|...+.+++++++||.|.+.+.++.++|..-++..+-.......   ...+...++.++     .+
T Consensus       162 ~~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl~~l~~~~~~~~---~~~~l~~s~~dl-----~i  233 (381)
T KOG1764|consen  162 PPFVSISPESSLLDAVLLLIKSRIHRVPVIDPETGEVLYILTQRRILKFLWLNGRLLP---LPSLLSKSLSDL-----GI  233 (381)
T ss_pred             CCceeecCcHHHHHHHHHHHhCCccceeeecccccceeeehhHHHHHHHHHHhhcccc---cHHHhhCCHHHh-----Cc
Confidence            3448999999999999999999999999999777899999999998887764443221   122222222222     11


Q ss_pred             ccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCc
Q 014342          245 NLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSL  324 (426)
Q Consensus       245 ~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~  324 (426)
                      +           ....+..+..++++.+|++.|..++++.+||++.   .|   ..+|+++..|+........-.     
T Consensus       234 g-----------~~~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~---~g---~~v~~~s~~Dv~~l~~~~~~~-----  291 (381)
T KOG1764|consen  234 G-----------TWSNIASISEDTPVIEALKIMSERRISALPVVDE---NG---KKVGNYSRFDVIHLAREGTYN-----  291 (381)
T ss_pred             c-----------hhhhheeecCCCcHHHHHHHHHhcCcCcceEEcC---CC---ceecceehhhhhhhhhcCccC-----
Confidence            1           1345788999999999999999999999999952   34   479999999998766544211     


Q ss_pred             cccccc-cccccccccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHhcc
Q 014342          325 PILQQP-VSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDK  400 (426)
Q Consensus       325 ~~~~~~-v~~l~i~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~~~  400 (426)
                       .++.+ +.+     +.+ ........+++|+++++|.++++.|..++++++.|||++|.++|+||.+||+.++...
T Consensus       292 -~~~~~~l~~-----~~~-~~~~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsDil~~l~~~  361 (381)
T KOG1764|consen  292 -NLDLSCLSE-----ALS-HRPIRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLSDILSYLVLT  361 (381)
T ss_pred             -ccchhHHHH-----Hhh-hcccccCccEEEeecchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHHHHHHHHHhC
Confidence             11111 111     110 0111224689999999999999999999999999999999999999999999987654

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=99.53  E-value=3.1e-13  Score=142.53  Aligned_cols=215  Identities=15%  Similarity=0.203  Sum_probs=139.8

Q ss_pred             ccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccch
Q 014342          155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTI  234 (426)
Q Consensus       155 ~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i  234 (426)
                      .++.|+|.+  ++++++++.++.+|+++|.+++++.+||+|+ +++++|++|..|+...+...... ..+  ..+ ..++
T Consensus        68 ~~V~dim~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~l~Givt~~di~~~~~~~~~~-~~~--~~~-~~t~  140 (546)
T PRK14869         68 PQVRDLEID--KPVTVSPDTSLKEAWNLMDENNVKTLPVVDE-EGKLLGLVSLSDLARAYMDILDP-EIL--SKS-PTSL  140 (546)
T ss_pred             CcHHHhcCC--CCcEECCCCcHHHHHHHHHHcCCCEEEEEcC-CCEEEEEEEHHHHHHHHHhhcch-hhh--hhc-CCCH
Confidence            578899865  7889999999999999999999999999995 47999999999998765533210 000  000 0001


Q ss_pred             hhhHHHHHhh---c-------cccccCCC-------CCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCC-
Q 014342          235 SAWKVGKLQL---N-------LKRQMDGN-------GRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGS-  296 (426)
Q Consensus       235 ~~~~~~~~~~---~-------~~~~~~g~-------~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~-  296 (426)
                      ..+.+.....   +       .++..-++       ..+....++++....   +.+..+++.++++++|+.+...... 
T Consensus       141 ~~i~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~---d~~~~ai~~~~~~lIlt~g~~~~~~v  217 (546)
T PRK14869        141 ENIIRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDRE---DIQLAAIEAGVRLLIITGGAPVSEDV  217 (546)
T ss_pred             HHHHHhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcH---HHHHHHHHcCCCEEEECCCCCCCHHH
Confidence            1111000000   0       00000000       001122355554333   3345678889999999853220000 


Q ss_pred             -----cceEEEEecHHhHHHHHHhhccccCCCccccccccccccccccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcC
Q 014342          297 -----CQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQAD  371 (426)
Q Consensus       297 -----~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~  371 (426)
                           ...+.+|.|..|.........         .+.+|.++|.           .++++++++++++.+|.++|.+++
T Consensus       218 ~~la~~~~i~ii~t~~dt~~t~~~l~---------~~~~V~~iM~-----------~~~~~~~~~~~~~~~~~~~m~~~~  277 (546)
T PRK14869        218 LELAKENGVTVISTPYDTFTTARLIN---------QSIPVSYIMT-----------TEDLVTFSKDDYLEDVKEVMLKSR  277 (546)
T ss_pred             HHHHHhCCCeEEEecccHHHHHHHhh---------cCCCHHHhcc-----------CCCcEEECCCCcHHHHHHHHHhcC
Confidence                 003788888888877654321         2345555542           047889999999999999999999


Q ss_pred             CcEeeEEcCCCcEEEEEeHHHHHHHHhc
Q 014342          372 VSSIPIVDDNDSLLDIYSRSDITALAKD  399 (426)
Q Consensus       372 i~~lPVVd~~g~lvGiis~~DI~~~~~~  399 (426)
                      ++.+||||++|+++|+||++|+++....
T Consensus       278 ~~~~PVvd~~g~lvGiit~~dl~~~~~~  305 (546)
T PRK14869        278 YRSYPVVDEDGKVVGVISRYHLLSPVRK  305 (546)
T ss_pred             CCceEEEcCCCCEEEEEEHHHhhccccC
Confidence            9999999999999999999999986554

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=99.51  E-value=1.8e-13  Score=113.04  Aligned_cols=108  Identities=15%  Similarity=0.208  Sum_probs=88.5

Q ss_pred             ceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccccccccc
Q 014342          261 LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWV  340 (426)
Q Consensus       261 ~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~  340 (426)
                      ++++.+++++.+|++.|.+++.+++||++   +++   +++|++|..|+++....         .+...++.+++.    
T Consensus         3 ~~~v~~~~~l~~a~~~~~~~~~~~~~V~d---~~~---~~~G~v~~~dl~~~~~~---------~~~~~~v~~~~~----   63 (111)
T cd04603           3 TVSVNCENPLREAIKMINELGARAVVVVD---EEN---KVLGQVTLSDLLEIGPN---------DYETLKVCEVYI----   63 (111)
T ss_pred             eEEeCCCCcHHHHHHHHHHcCCCEEEEEc---CCC---CEEEEEEHHHHHhhccc---------cccccChhheee----
Confidence            46789999999999999999999999995   235   69999999999873211         111234554442    


Q ss_pred             cccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342          341 PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (426)
Q Consensus       341 ~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~  395 (426)
                              .++.++.+++++.+|+++|.+++.+.+||+|++|+++|+||++||++
T Consensus        64 --------~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~~~~~Giit~~di~~  110 (111)
T cd04603          64 --------VPVPIVYCDSKVTDLLRIFRETEPPVVAVVDKEGKLVGTIYERELLR  110 (111)
T ss_pred             --------cCCcEECCCCcHHHHHHHHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence                    36678999999999999999999999999998899999999999975

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.50  E-value=3.5e-13  Score=113.27  Aligned_cols=120  Identities=17%  Similarity=0.253  Sum_probs=89.7

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccccccc
Q 014342          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (426)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  339 (426)
                      ++.++.+++++.+|++.|.+++++++||+|+  .++   +++|+++..|+++++..+..............+..      
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~--~~~---~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~------   70 (123)
T cd04627           2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEE--ESG---EVIGILSQRRLVEFLWENARSFPGLDPLYPIPLRD------   70 (123)
T ss_pred             CceecCCCCCHHHHHHHHhhCCcceEEEEeC--CCC---cEEEEEEHHHHHHHHHHhHHhccchhhhhhhhhhh------
Confidence            4677899999999999999989999999963  225   69999999999987654321110000000000000      


Q ss_pred             ccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHH
Q 014342          340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT  394 (426)
Q Consensus       340 ~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~  394 (426)
                          ...+..++.++++++++.+|+++|.+++++++||+|++|+++|+||.+||.
T Consensus        71 ----~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di~  121 (123)
T cd04627          71 ----LTIGTSDVISINGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDVR  121 (123)
T ss_pred             ----cccCcCCceEeCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHhh
Confidence                011235788999999999999999999999999999889999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.48  E-value=5.7e-13  Score=110.46  Aligned_cols=111  Identities=20%  Similarity=0.291  Sum_probs=90.2

Q ss_pred             ceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccccccccc
Q 014342          261 LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWV  340 (426)
Q Consensus       261 ~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~  340 (426)
                      +.++.+++++.+|++.|.+++...+||+|+   +|   +++|++|..|+++.+.....      .....++.+++     
T Consensus         3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~---~g---~~~G~vt~~dl~~~~~~~~~------~~~~~~v~~~~-----   65 (114)
T cd04619           3 LAKIDVNATLQRAAKILGEPGIDLVVVCDP---HG---KLAGVLTKTDVVRQMGRCGG------PGCTAPVENVM-----   65 (114)
T ss_pred             eEEECCCCcHHHHHHHHHhcCCCEEEEECC---CC---CEEEEEehHHHHHHHhhcCC------CcccCCHHHHh-----
Confidence            467899999999999999999999999952   35   69999999999986543110      11123344443     


Q ss_pred             cccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342          341 PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (426)
Q Consensus       341 ~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~  395 (426)
                             .++++++.+++++.+|++.|.++++..+||+|++|+++|+|+++|++.
T Consensus        66 -------~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~  113 (114)
T cd04619          66 -------TRAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDENARPLGVLNARDALK  113 (114)
T ss_pred             -------cCCCeeECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence                   247778999999999999999999999999998899999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.48  E-value=4.5e-13  Score=111.84  Aligned_cols=113  Identities=19%  Similarity=0.309  Sum_probs=89.7

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccccccc
Q 014342          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (426)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  339 (426)
                      +++++.+++++.+|++.|.++++.++||+|+   .+   +++|++|..|+++.......       ....++.+++.. .
T Consensus         2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~---~~---~~~Givt~~dl~~~~~~~~~-------~~~~~~~~~~~~-~   67 (118)
T cd04617           2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDE---DG---DLVGVVSRKDLLKASIGGAD-------LQKVPVGVIMTR-M   67 (118)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcC---CC---CEEEEEEHHHHHHHHHcCCC-------ccCCCHHHHhCC-C
Confidence            4678999999999999999999999999952   34   69999999999987642210       112223333310 0


Q ss_pred             ccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCC---CcEEEEEeHHHHHH
Q 014342          340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN---DSLLDIYSRSDITA  395 (426)
Q Consensus       340 ~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~---g~lvGiis~~DI~~  395 (426)
                               .++.++.+++++.+|+++|.+++++.+||||++   |+++|+||++||++
T Consensus        68 ---------~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~  117 (118)
T cd04617          68 ---------PNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK  117 (118)
T ss_pred             ---------CCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence                     257799999999999999999999999999986   79999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=99.46  E-value=3.7e-13  Score=114.28  Aligned_cols=116  Identities=22%  Similarity=0.414  Sum_probs=95.2

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccc
Q 014342          256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  335 (426)
Q Consensus       256 ~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~  335 (426)
                      .|++|++.+.|++++.+++++|.++|++.+||++   + +   +++|-||.++|.+.+.+.-.      ...+..++++|
T Consensus        70 iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~---~-~---k~VGsItE~~iv~~~le~~e------~i~~~~vr~vM  136 (187)
T COG3620          70 IMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIE---E-D---KVVGSITENDIVRALLEGME------SIRSLRVREVM  136 (187)
T ss_pred             hccCCeeEECchhhHHHHHHHHHHcCCccCceee---C-C---eeeeeecHHHHHHHHhcccc------chhhhhHHHHh
Confidence            5899999999999999999999999999999995   2 4   69999999999998765422      12234444444


Q ss_pred             ccccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHhc
Q 014342          336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  399 (426)
Q Consensus       336 i~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~~  399 (426)
                                  ..++.++++++++..+-+++.+  ..++-|+ ++|+++||||+.||+++++.
T Consensus       137 ------------~e~fP~Vs~~~~l~vI~~LL~~--~~AVlV~-e~G~~vGIITk~DI~k~~~~  185 (187)
T COG3620         137 ------------GEPFPTVSPDESLNVISQLLEE--HPAVLVV-ENGKVVGIITKADIMKLLAG  185 (187)
T ss_pred             ------------cCCCCcCCCCCCHHHHHHHHhh--CCeEEEE-eCCceEEEEeHHHHHHHHhc
Confidence                        3577889999999999888866  4568888 57999999999999998764

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.44  E-value=2.1e-12  Score=106.85  Aligned_cols=112  Identities=17%  Similarity=0.281  Sum_probs=90.4

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccccccc
Q 014342          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (426)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  339 (426)
                      .+.++.+++++.+|++.|.+++.+.+||+++  ..+   +++|+++..|+++++......      ....++.+++    
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~--~~~---~~~G~v~~~dl~~~~~~~~~~------~~~~~v~~~~----   66 (114)
T cd04630           2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKR--RES---DAYGIVTMRDILKKVVAEGRD------PDRVNVYEIM----   66 (114)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCEEEEEEC--CCC---cEEEEEehHHHHHHHHhCCCC------CCccCHHHHh----
Confidence            4578999999999999999999999999962  224   699999999999876542111      1123344443    


Q ss_pred             ccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342          340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (426)
Q Consensus       340 ~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~  395 (426)
                              .+++.++++++++.+|+++|.+++...+||+|+ |+++|+|++.||++
T Consensus        67 --------~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~Gvi~~~dl~~  113 (114)
T cd04630          67 --------TKPLISVSPDMDIKYCARLMERTNIRRAPVVEN-NELIGIISLTDIFL  113 (114)
T ss_pred             --------cCCCeeECCCCCHHHHHHHHHHcCCCEeeEeeC-CEEEEEEEHHHhhc
Confidence                    247789999999999999999999999999997 99999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.44  E-value=1.6e-12  Score=104.70  Aligned_cols=94  Identities=13%  Similarity=0.233  Sum_probs=82.5

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccccccc
Q 014342          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (426)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  339 (426)
                      +++++.+++++.+|++.|.+++++.+||+|   ++|   +++|+++..|+++..                          
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d---~~~---~~~Giv~~~dl~~~~--------------------------   49 (96)
T cd04614           2 NVPTVWEETPLPVAVRIMELANVKALPVLD---DDG---KLSGIITERDLIAKS--------------------------   49 (96)
T ss_pred             CccEeCCCCcHHHHHHHHHHcCCCeEEEEC---CCC---CEEEEEEHHHHhcCC--------------------------
Confidence            457889999999999999999999999995   235   699999999987621                          


Q ss_pred             ccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342          340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (426)
Q Consensus       340 ~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~  395 (426)
                                .+.++.+++++.+|+++|.+++++.+||+|++|+++|+||++||++
T Consensus        50 ----------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~~~~Giit~~di~~   95 (96)
T cd04614          50 ----------EVVTATKRTTVSECAQKMKRNRIEQIPIINGNDKLIGLLRDHDLLK   95 (96)
T ss_pred             ----------CcEEecCCCCHHHHHHHHHHhCCCeeeEECCCCcEEEEEEHHHhhc
Confidence                      1347899999999999999999999999998899999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.42  E-value=8e-13  Score=111.74  Aligned_cols=112  Identities=17%  Similarity=0.247  Sum_probs=90.7

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccccccc
Q 014342          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (426)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  339 (426)
                      +++++.+++++.++++.|.++++.++||+++   ++   +++|+++..++++.+......       ...++.++|    
T Consensus         3 ~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~---~~---~~~Gii~~~dl~~~~~~~~~~-------~~~~v~~im----   65 (124)
T cd04608           3 APVTVLPTVTCAEAIEILKEKGFDQLPVVDE---SG---KILGMVTLGNLLSSLSSGKVQ-------PSDPVSKAL----   65 (124)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcC---CC---CEEEEEEHHHHHHHHHHhccC-------CCCcHHHHh----
Confidence            5678999999999999999999999999952   34   699999999999876543211       134555555    


Q ss_pred             ccccCCCCCCCeEEEcCCCCHHHHHHHHH---------hcCCcEeeEEcCCCcEEEEEeHHHHHHH
Q 014342          340 VPRIGEANGRPFAMLRPTASLGSALALLV---------QADVSSIPIVDDNDSLLDIYSRSDITAL  396 (426)
Q Consensus       340 ~~~~~~~~~~~v~tv~~~~~l~~a~~~m~---------~~~i~~lPVVd~~g~lvGiis~~DI~~~  396 (426)
                              .+++.++.+++++.+|.++|.         +.+..++||+|++|+++|+||++||+++
T Consensus        66 --------~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~~~  123 (124)
T cd04608          66 --------YKQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLSY  123 (124)
T ss_pred             --------hccceecCCCCCHHHHHhhcccCCceEEEeccccccccccccccceEEEEehhHhhhh
Confidence                    257889999999999999653         4478899999988999999999999875

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=99.42  E-value=2.8e-12  Score=107.53  Aligned_cols=122  Identities=19%  Similarity=0.359  Sum_probs=91.0

Q ss_pred             CCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccccccc
Q 014342          259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  338 (426)
Q Consensus       259 ~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~  338 (426)
                      ++++++.++.++.++++.|.+++++++||+++   +|   +++|+++..++++++...... .. ...+.....+..++.
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~---~~---~~~Giv~~~~l~~~~~~~~~~-~~-~~~~~~~~~~~~i~~   73 (124)
T cd04600           2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDG---DR---RLVGIVTQRDLLRHARPDGRR-PL-RGRLRGRDKPETVGD   73 (124)
T ss_pred             CCcEEeCCCCCHHHHHHHHHHcCCceeeEECC---CC---CEEEEEEHHHHHhhhcccccc-hh-hhhhhcccccccHHH
Confidence            46788999999999999999999999999952   35   699999999998866432110 00 000000000111112


Q ss_pred             cccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342          339 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (426)
Q Consensus       339 ~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~  395 (426)
                             .+.++++++.+++++.+|+++|.+++.+.+||+|++|+++|+||++|+++
T Consensus        74 -------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~  123 (124)
T cd04600          74 -------IMSPPVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIA  123 (124)
T ss_pred             -------hccCCCeeeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhhc
Confidence                   22357889999999999999999999999999998899999999999874

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=99.41  E-value=4e-12  Score=104.96  Aligned_cols=109  Identities=21%  Similarity=0.347  Sum_probs=88.7

Q ss_pred             ceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccccccccc
Q 014342          261 LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWV  340 (426)
Q Consensus       261 ~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~  340 (426)
                      .+++.+++++.+|+..|.+.+.+.+||+++   +|   +++|+++..|+++.+.....        ...++.+++     
T Consensus         4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~---~~---~~~G~v~~~dl~~~~~~~~~--------~~~~v~~~~-----   64 (113)
T cd04607           4 QLLVSPDASILDALRKIDKNALRIVLVVDE---NG---RLLGTVTDGDIRRALLKGLS--------LDDPVSEVM-----   64 (113)
T ss_pred             ceEECCCCCHHHHHHHHHhcCcCEEEEECC---CC---CEEEEEEcHHHHHHHhcCCC--------cCCCHHHhh-----
Confidence            467899999999999999999999999952   35   69999999999876543211        122344333     


Q ss_pred             cccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342          341 PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (426)
Q Consensus       341 ~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~  395 (426)
                             ..++.++.+++++.+|+++|.+++.+.+||+|++|+++|+||++||+.
T Consensus        65 -------~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~  112 (113)
T cd04607          65 -------NRNPITAKVGSSREEILALMRERSIRHLPILDEEGRVVGLATLDDLLS  112 (113)
T ss_pred             -------cCCCEEEcCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEhHHhcc
Confidence                   136778999999999999999999999999998899999999999863

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=99.41  E-value=5.7e-12  Score=103.33  Aligned_cols=108  Identities=23%  Similarity=0.446  Sum_probs=89.6

Q ss_pred             CCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccccccc
Q 014342          259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  338 (426)
Q Consensus       259 ~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~  338 (426)
                      ++++++.+++++.++++.|.+++..++||+++   +|   +++|+++..++++.+....           .++.+++   
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~~l~~~~~~~~-----------~~~~~~~---   61 (110)
T cd04605           2 RPVVTISEDASIKEAAKLMIEENINHLPVVDE---DG---RLVGIVTSWDISKAVARDK-----------KSVEDIM---   61 (110)
T ss_pred             CCCEEECCCCCHHHHHHHHHhCCCceEEEECC---CC---cEEEEEeHHHHHHHHhhCc-----------cCHHHhc---
Confidence            45678999999999999999999999999952   35   7999999999987654321           1133332   


Q ss_pred             cccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342          339 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (426)
Q Consensus       339 ~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~  395 (426)
                               .+++.++.+++++.+|++.|.+++...+||++++|+++|+||+.||++
T Consensus        62 ---------~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~~  109 (110)
T cd04605          62 ---------TRNVITATPDEPIDVAARKMERHNISALPVVDAENRVIGIITSEDISK  109 (110)
T ss_pred             ---------CCCCeEECCCCcHHHHHHHHHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence                     146778999999999999999999999999999999999999999875

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=99.41  E-value=2.4e-12  Score=106.49  Aligned_cols=111  Identities=14%  Similarity=0.240  Sum_probs=87.5

Q ss_pred             CceEeCCCCCHHHHHHHHHhCC-CCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccccccc
Q 014342          260 PLVQAGPYDSLKEVALKILQNK-VATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  338 (426)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~-v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~  338 (426)
                      ++.++.+++++.+|++.|.+++ .+.+||+|+   ++   +++|+++..|+++......         ...++.+++.  
T Consensus         2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~dl~~~~~~~~---------~~~~v~~~~~--   64 (114)
T cd04801           2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDN---EG---RYVGIISLADLRAIPTSQW---------AQTTVIQVMT--   64 (114)
T ss_pred             CcceeCCCCCHHHHHHHHhccCCceeEEEEcC---CC---cEEEEEEHHHHHHHHHhhc---------cccchhhhhc--
Confidence            4577899999999999998775 899999952   34   6999999999988654221         1233444431  


Q ss_pred             cccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342          339 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (426)
Q Consensus       339 ~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~  395 (426)
                      ..        .++.++.+++++.+|++.|.+++.+.+||+|++|+++|+++..||++
T Consensus        65 ~~--------~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~  113 (114)
T cd04801          65 PA--------AKLVTVLSEESLAEVLKLLEEQGLDELAVVEDSGQVIGLITEADLLR  113 (114)
T ss_pred             cc--------ccceEECCCCcHHHHHHHHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence            00        13568999999999999999999999999998899999999999875

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.41  E-value=3.5e-12  Score=104.75  Aligned_cols=109  Identities=21%  Similarity=0.443  Sum_probs=89.7

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccccccc
Q 014342          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (426)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  339 (426)
                      .+.++.+++++.++++.|.+.+..++||+++   +|   +++|+++..++++++.....         ..++.+++.   
T Consensus         2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~---~~---~~~G~v~~~~l~~~~~~~~~---------~~~v~~~~~---   63 (111)
T cd04639           2 HFETLSPADTLDDAADALLATTQHEFPVVDG---DG---HLVGLLTRDDLIRALAEGGP---------DAPVRGVMR---   63 (111)
T ss_pred             CceEcCCCCcHHHHHHHHHHcCCCcceEECC---CC---cEEEEeeHHHHHHHHHhcCC---------CCcHHHHhc---
Confidence            3567899999999999999889999999952   35   69999999999987653311         123443331   


Q ss_pred             ccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342          340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (426)
Q Consensus       340 ~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~  395 (426)
                               +++.++.+++++.+|++.|.+++...+||+|++|+++|++|++||..
T Consensus        64 ---------~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~  110 (111)
T cd04639          64 ---------RDFPTVSPSATLDAVLRLMQQGGAPAVPVVDGSGRLVGLVTLENVGE  110 (111)
T ss_pred             ---------CCCcEECCCCcHHHHHHHHHhcCCceeeEEcCCCCEEEEEEHHHhhc
Confidence                     46778999999999999999999999999998899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.41  E-value=5.3e-12  Score=105.55  Aligned_cols=119  Identities=20%  Similarity=0.277  Sum_probs=89.2

Q ss_pred             cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhc
Q 014342          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (426)
Q Consensus       166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~  245 (426)
                      ++++++++.|+.+|+++|.++++.++||+|+ .++++|++|..|++..+......   .     ....+..... ...  
T Consensus         2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~~~Giv~~~dl~~~~~~~~~~---~-----~~~~~~~~~~-~~~--   69 (120)
T cd04641           2 NIATARPDTPLIDVLDMLVERRVSALPIVDE-NGKVVDVYSRFDVINLAKEGAYN---N-----LDLTVGEALE-RRS--   69 (120)
T ss_pred             CcEEEcCCCCHHHHHHHHHHcCCCeeeEECC-CCeEEEEEeHHHHHHHHhcCccc---c-----ccCCHHHHHh-hcc--
Confidence            4678999999999999999999999999986 57999999999988654321100   0     0000111000 000  


Q ss_pred             cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHH
Q 014342          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (426)
Q Consensus       246 ~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~  312 (426)
                                .|..++.++.+++++.++++.|.+++++.+||+++   +|   +++|++|++|++++
T Consensus        70 ----------~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~---~~---~~~Givt~~di~~~  120 (120)
T cd04641          70 ----------QDFEGVRTCSPDDCLRTIFDLIVKARVHRLVVVDE---NK---RVEGIISLSDILQF  120 (120)
T ss_pred             ----------cCCCCCeEEcCCCcHHHHHHHHHhcCccEEEEECC---CC---CEEEEEEHHHhhcC
Confidence                      23467789999999999999999999999999952   35   69999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=99.40  E-value=7.4e-12  Score=106.45  Aligned_cols=121  Identities=16%  Similarity=0.342  Sum_probs=95.0

Q ss_pred             cccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccc
Q 014342          154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHT  233 (426)
Q Consensus       154 ~~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~  233 (426)
                      ..+|..+|..  +++++.+++++.+|+++|.++|++-+||+++  ++++|-||..|+++.+..-.        +++..++
T Consensus        64 ~ita~~iM~s--pvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~--~k~VGsItE~~iv~~~le~~--------e~i~~~~  131 (187)
T COG3620          64 RITAKTIMHS--PVVSVSPDDSISDVVNLMRDKGISQLPVIEE--DKVVGSITENDIVRALLEGM--------ESIRSLR  131 (187)
T ss_pred             eEeHhhhccC--CeeEECchhhHHHHHHHHHHcCCccCceeeC--CeeeeeecHHHHHHHHhccc--------cchhhhh
Confidence            5789999976  8999999999999999999999999999986  68999999999988765321        2222222


Q ss_pred             hhhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHH
Q 014342          234 ISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCI  313 (426)
Q Consensus       234 i~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l  313 (426)
                      .+       .            .|..+|.+|++++++...-.++-.  ..++.|++    +|   +++||||+.||++.+
T Consensus       132 vr-------~------------vM~e~fP~Vs~~~~l~vI~~LL~~--~~AVlV~e----~G---~~vGIITk~DI~k~~  183 (187)
T COG3620         132 VR-------E------------VMGEPFPTVSPDESLNVISQLLEE--HPAVLVVE----NG---KVVGIITKADIMKLL  183 (187)
T ss_pred             HH-------H------------HhcCCCCcCCCCCCHHHHHHHHhh--CCeEEEEe----CC---ceEEEEeHHHHHHHH
Confidence            11       1            257889999999999776665544  45777773    46   799999999999986


Q ss_pred             H
Q 014342          314 C  314 (426)
Q Consensus       314 ~  314 (426)
                      .
T Consensus       184 ~  184 (187)
T COG3620         184 A  184 (187)
T ss_pred             h
Confidence            5

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.39  E-value=4.7e-12  Score=106.87  Aligned_cols=123  Identities=15%  Similarity=0.247  Sum_probs=89.7

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccc-ccc
Q 014342          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ-LGT  338 (426)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~-i~~  338 (426)
                      .++++.+++++.+|++.|.++++.++||+|+   .|   +++|+++..|+++.........       ..+....+ +..
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~---~~---~~~Giv~~~dl~~~~~~~~~~~-------~~~~~~~~~~~~   68 (126)
T cd04642           2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDE---KG---KLIGNISASDLKGLLLSPDDLL-------LYRTITFKELSE   68 (126)
T ss_pred             CeEEECCCccHHHHHHHHHHhCCCcccEECC---CC---cEEEEEEHHHhhhhhcCcchhh-------cccchhhhhhhh
Confidence            3578999999999999999999999999952   35   6999999999988754221110       00000000 000


Q ss_pred             cccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342          339 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (426)
Q Consensus       339 ~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~  395 (426)
                      ........+.+++.++.+++++.+|+++|.+++++.+||+|++|+++|+||.+||++
T Consensus        69 ~~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil~  125 (126)
T cd04642          69 KFTDSDGVKSRPLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIIS  125 (126)
T ss_pred             hcccccccccCCCeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHhc
Confidence            000000122357889999999999999999999999999998899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=99.39  E-value=7.8e-12  Score=103.52  Aligned_cols=111  Identities=18%  Similarity=0.371  Sum_probs=89.1

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccccccc
Q 014342          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (426)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  339 (426)
                      ++.++.+++++.++++.|.+.+++++||+++   .+   +++|+++..|+++.+......       ...++.+++    
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~dl~~~~~~~~~~-------~~~~~~~~~----   64 (115)
T cd04593           2 PPPVLSATTPLREAAEQLIESKHGSALVVDR---DG---GVVGIITLPDLLRALEADEAG-------EPSAVDEVA----   64 (115)
T ss_pred             CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcC---CC---CEEEEEEHHHHHHHHhccccc-------ccccHHHhc----
Confidence            3567889999999999999999999999952   35   699999999999876532110       111233332    


Q ss_pred             ccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCC--CcEEEEEeHHHHHH
Q 014342          340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN--DSLLDIYSRSDITA  395 (426)
Q Consensus       340 ~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~--g~lvGiis~~DI~~  395 (426)
                              ..++.++.+++++.+|+++|.+++...+||+|++  |+++|+||++||++
T Consensus        65 --------~~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~  114 (115)
T cd04593          65 --------TPPLLTVHPDEPLAHALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL  114 (115)
T ss_pred             --------cCCceEECCCCCHHHHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence                    2467789999999999999999999999999987  89999999999875

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.38  E-value=8.8e-12  Score=102.39  Aligned_cols=111  Identities=23%  Similarity=0.398  Sum_probs=89.6

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccccccc
Q 014342          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (426)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  339 (426)
                      ++.++.++.++.++++.|.+++++++||+++   ++   +++|+++..|+++++......      ....++.+++    
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~---~~---~~~Giv~~~~l~~~~~~~~~~------~~~~~~~~~~----   65 (113)
T cd04623           2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDD---GG---RLVGIFSERDIVRKVALRGAS------ALDTPVSEIM----   65 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEECC---CC---CEEEEEehHHHHHHHhhcCCC------ccccCHHHhc----
Confidence            4577899999999999999999999999952   34   699999999999876543211      1122333333    


Q ss_pred             ccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342          340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (426)
Q Consensus       340 ~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~  395 (426)
                              .+++.++.+++++.+++++|.+++.+.+||+++ |+++|+||..||++
T Consensus        66 --------~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~  112 (113)
T cd04623          66 --------TRNVITVTPDDTVDEAMALMTERRFRHLPVVDG-GKLVGIVSIGDVVK  112 (113)
T ss_pred             --------CCCcEEECCCCcHHHHHHHHHHcCCCEeEEEeC-CEEEEEEEHHHhhc
Confidence                    247788999999999999999999999999997 99999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.38  E-value=1e-11  Score=102.06  Aligned_cols=110  Identities=22%  Similarity=0.401  Sum_probs=89.9

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccccccc
Q 014342          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (426)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  339 (426)
                      ++.++.++.++.+|++.|.+.+.+++||+++   ++   +++|+++..++++.+.....        ...++.+++    
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~---~~---~~~G~v~~~~l~~~~~~~~~--------~~~~v~~~~----   63 (112)
T cd04624           2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDP---DE---RPIGIVTERDIVRAVAAGID--------LDTPVSEIM----   63 (112)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCCEEEEECC---CC---CEEEEeeHHHHHHHHhccCC--------CccCHHHhc----
Confidence            4567899999999999999999999999952   35   69999999999887654321        122333333    


Q ss_pred             ccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342          340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (426)
Q Consensus       340 ~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~  395 (426)
                              ..++.++.+++++.+++++|.++++..+||+|++|+++|++|++||++
T Consensus        64 --------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~  111 (112)
T cd04624          64 --------TRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGGELVGVISIRDLVR  111 (112)
T ss_pred             --------cCCCEEECCCCcHHHHHHHHHHcCccEEEEEcCCCcEEEEEEHHHhcc
Confidence                    246778999999999999999999999999998899999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.38  E-value=5.6e-12  Score=104.27  Aligned_cols=114  Identities=18%  Similarity=0.301  Sum_probs=87.6

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccccccc
Q 014342          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (426)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  339 (426)
                      .++++.+++++.++++.|.+++++.+||+|   +++   +++|+++..|+++++........  ..+...++.+++    
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d---~~~---~~~Giv~~~dl~~~~~~~~~~~~--~~~~~~~v~~~~----   69 (116)
T cd04643           2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLD---KEG---KYVGTISLTDILWKLKGLENLDL--ERLVDLKVIDVM----   69 (116)
T ss_pred             CcEEECCCCcHHHHHHHHHHCCCceeeeEC---CCC---cEEEEEeHHHHHHHhhccCchhH--HHHhCCcHHHHh----
Confidence            357899999999999999999999999995   235   69999999999987753211000  000123333333    


Q ss_pred             ccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342          340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (426)
Q Consensus       340 ~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~  395 (426)
                              .+++.++.+++++.+|++.|.+++  .+||+|++|+++|+||+.||++
T Consensus        70 --------~~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~dil~  115 (116)
T cd04643          70 --------NTDVPVIIDDADIEEILHLLIDQP--FLPVVDDDGIFIGIITRREILK  115 (116)
T ss_pred             --------cCCCceecCCCCHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHHhhc
Confidence                    246778999999999999998865  5999999899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.37  E-value=9.5e-12  Score=102.92  Aligned_cols=109  Identities=17%  Similarity=0.339  Sum_probs=85.5

Q ss_pred             ceEeCCCCCHHHHHHHHHhCC-CCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccccccc
Q 014342          261 LVQAGPYDSLKEVALKILQNK-VATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (426)
Q Consensus       261 ~v~v~~~~sl~~a~~~m~~~~-v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  339 (426)
                      +.++.++.++.++++.|.+++ ...+||++   . |   +++|+++..|+++++.....       ....++.+++    
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~-~---~~~G~v~~~dl~~~~~~~~~-------~~~~~i~~~~----   64 (115)
T cd04620           3 PLTVTPDTPVADAIALMSQQGDSSCVLVVE---K-G---RLLGIFTERDIVRLTAIGKD-------LSDLPIGEVM----   64 (115)
T ss_pred             CeEeCCCCcHHHHHHHHHhcCCCceEEEcC---C-C---cEEEEEeHHHHHHHHhcCCC-------ccccCHHHhc----
Confidence            467899999999999998888 56677773   2 5   69999999999986643211       1123344433    


Q ss_pred             ccccCCCCCCCeEEEcCC--CCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342          340 VPRIGEANGRPFAMLRPT--ASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (426)
Q Consensus       340 ~~~~~~~~~~~v~tv~~~--~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~  395 (426)
                              .+++.++.++  +++.+|+++|.+++...+||+|++|+++|+||++||++
T Consensus        65 --------~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~  114 (115)
T cd04620          65 --------TQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQ  114 (115)
T ss_pred             --------CCCcEEEecccccCHHHHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhhc
Confidence                    2466778887  78999999999999999999999899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.37  E-value=8.8e-12  Score=102.43  Aligned_cols=109  Identities=17%  Similarity=0.292  Sum_probs=88.4

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccccccc
Q 014342          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (426)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  339 (426)
                      ++.++.++.++.++++.|.+.+.+++||+++   .|   +++|+++..|++.+.....        ....++.+++    
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~---~~---~~~G~v~~~dl~~~~~~~~--------~~~~~v~~~~----   63 (111)
T cd04626           2 DFPTIDEDASIREALHEMLKYNTNEIIVKDN---EE---KLKGVVTFTDILDLDLFES--------FLEKKVFNIV----   63 (111)
T ss_pred             CceEECCCccHHHHHHHHHHhCCCeEEEEcC---CC---CEEEEEehHHhHHHHhhcc--------cccCcHHHHh----
Confidence            4567899999999999999999999999952   35   6999999999987543210        1123344443    


Q ss_pred             ccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342          340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (426)
Q Consensus       340 ~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~  395 (426)
                              .+++.++.+++++.+|++.|.+++...+||+|+ |+++|+||+.||+.
T Consensus        64 --------~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~di~~  110 (111)
T cd04626          64 --------SQDVFYVNEEDTIDEALDIMREKQIGRLPVVDD-NKLIGVVRTKDILD  110 (111)
T ss_pred             --------cCCcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEhHHhcc
Confidence                    247778999999999999999999999999997 99999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.37  E-value=1.2e-11  Score=100.58  Aligned_cols=104  Identities=13%  Similarity=0.165  Sum_probs=85.7

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccccccc
Q 014342          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (426)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  339 (426)
                      ++.++.++.++.+|++.|.+++.+.+||++   ++|   +++|++|..|+++...              .++.+++    
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d---~~g---~~~Giv~~~dl~~~~~--------------~~~~~~~----   57 (106)
T cd04582           2 EPITVRPDDPLSDALGLMDDSDLRALTVVD---ADG---QPLGFVTRREAARASG--------------GCCGDHA----   57 (106)
T ss_pred             CCcEecCCCcHHHHHHHHHhcCCCEEEEEC---CCC---CEEEEEeHHHHHHhcc--------------cchhhhc----
Confidence            356789999999999999999999999995   235   6999999999986421              1122222    


Q ss_pred             ccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342          340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (426)
Q Consensus       340 ~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~  395 (426)
                              .++..++.+++++.+|+++|.+++++.+||+|++|+++|+|+++|+++
T Consensus        58 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~  105 (106)
T cd04582          58 --------EPFKVTVSVDDDLRIVLSRMFAHDMSWLPCVDEDGRYVGEVTQRSIAD  105 (106)
T ss_pred             --------ccCCEEECCCCCHHHHHHHHHHCCCCeeeEECCCCcEEEEEEHHHhhc
Confidence                    135567999999999999999999999999999899999999999875

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=99.37  E-value=1.1e-11  Score=101.74  Aligned_cols=109  Identities=16%  Similarity=0.250  Sum_probs=88.6

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccccccc
Q 014342          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (426)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  339 (426)
                      .++++.+++++.+|++.|.+.+...+||+++  ..+   +++|+++..++++++.....         ..++.+++    
T Consensus         2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~--~~~---~~~G~v~~~~l~~~~~~~~~---------~~~~~~~~----   63 (111)
T cd04590           2 DIVALDADDTLEEILELIAESGHSRFPVYDG--DLD---NIIGVVHVKDLLRALAEGEE---------DLDLRDLL----   63 (111)
T ss_pred             ceEEEcCCCCHHHHHHHHhhCCCceEEEECC--CCc---eEEEEEEHHHHHHHHHcCCC---------cCCHHHHh----
Confidence            3577899999999999999999999999953  225   69999999999987643210         01222221    


Q ss_pred             ccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342          340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (426)
Q Consensus       340 ~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~  395 (426)
                               +++.++.+++++.+|++.|.+++.+.+||+|++|+++|+||++|+++
T Consensus        64 ---------~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~  110 (111)
T cd04590          64 ---------RPPLFVPESTPLDDLLEEMRKERSHMAIVVDEYGGTAGLVTLEDILE  110 (111)
T ss_pred             ---------cCCeecCCCCcHHHHHHHHHhcCCcEEEEEECCCCEEEEeEHHHhhc
Confidence                     35678999999999999999999999999998899999999999874

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.36  E-value=8.8e-12  Score=104.61  Aligned_cols=119  Identities=25%  Similarity=0.449  Sum_probs=91.4

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCC----Ccccccccccccc
Q 014342          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSS----SLPILQQPVSSIQ  335 (426)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~----~~~~~~~~v~~l~  335 (426)
                      +++++.++.++.+|++.|.+.+.+.+||+++  ++|   +++|+++..|+++++.........    .......++.+++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~--~~~---~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (125)
T cd04631           2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDE--GTG---KLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRSIM   76 (125)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCcccceeEeC--CCC---EEEEEEEHHHHHHHhhccchhccccccccchhhhcCHHHHh
Confidence            4577899999999999999999999999963  225   799999999999877543211000    0001112233322


Q ss_pred             ccccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342          336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (426)
Q Consensus       336 i~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~  395 (426)
                                  .++++++.+++++.++++.|.+.+.+.+||+|++|+++|+||+.||++
T Consensus        77 ------------~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~  124 (125)
T cd04631          77 ------------TRNVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLK  124 (125)
T ss_pred             ------------cCCceEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhc
Confidence                        246889999999999999999999999999998899999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.36  E-value=1.1e-11  Score=103.50  Aligned_cols=118  Identities=21%  Similarity=0.427  Sum_probs=90.8

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCc--ccccccccccccc
Q 014342          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSL--PILQQPVSSIQLG  337 (426)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~--~~~~~~v~~l~i~  337 (426)
                      ++.++.+++++.++++.|.+.+++++||+++   +|   +++|+++..++++.+...........  .....++.+++  
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~---~~---~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~--   73 (122)
T cd04803           2 PVVTLSEDDSLADAEELMREHRIRHLPVVNE---DG---KLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAEVM--   73 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCcccccEECC---CC---CEEEEEEHHHHHHHhccccccccccccccccCcCHHHhh--
Confidence            4577899999999999999999999999952   35   69999999999987654321100000  00112222222  


Q ss_pred             ccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342          338 TWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (426)
Q Consensus       338 ~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~  395 (426)
                                .+++.++.+++++.+|+++|.+++.+.+||+|++|+++|+||+.||++
T Consensus        74 ----------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~  121 (122)
T cd04803          74 ----------KTDVLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLR  121 (122)
T ss_pred             ----------CCCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhc
Confidence                      247788999999999999999999999999998899999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.36  E-value=1.4e-11  Score=101.52  Aligned_cols=110  Identities=14%  Similarity=0.242  Sum_probs=88.7

Q ss_pred             ceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccccccccc
Q 014342          261 LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWV  340 (426)
Q Consensus       261 ~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~  340 (426)
                      +.++.+++++.+|++.|.+.+.+++||+++   ++   +++|+++..|+++.+....       .+...++.+++     
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~---~~---~~~G~v~~~dl~~~~~~~~-------~~~~~~i~~~~-----   64 (113)
T cd04615           3 PSCVVLNTDIARAVAEMYTSGSRALPVVDD---KK---RLVGIITRYDVLSYALESE-------ELKDAKVREVM-----   64 (113)
T ss_pred             CEEeeCCCcHHHHHHHHHHcCCceEeEEcC---CC---CEEEEEEHHHHHHhhhhhh-------hhcCCcHHHhc-----
Confidence            467899999999999999999999999952   34   6999999999987543321       01123343333     


Q ss_pred             cccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342          341 PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (426)
Q Consensus       341 ~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~  395 (426)
                             .+++.++.+++++.++++.|.+++...+||+|++|+++|++++.||++
T Consensus        65 -------~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~  112 (113)
T cd04615          65 -------NSPVITIDANDSIAKARWLMSNNNISRLPVLDDKGKVGGIVTEDDILR  112 (113)
T ss_pred             -------cCCceEECCCCcHHHHHHHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence                   146778999999999999999999999999998899999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=99.35  E-value=6e-12  Score=126.63  Aligned_cols=117  Identities=19%  Similarity=0.314  Sum_probs=99.4

Q ss_pred             CCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccccc
Q 014342          257 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL  336 (426)
Q Consensus       257 ~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i  336 (426)
                      ++.|+++++|.+|+.+|+..|.+.|++.+.+++.   ++   ..+||+|++|+.+.+......       ...+|.++| 
T Consensus       155 ~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~---~~---~~~GIvT~~dl~~~v~~~g~~-------~~~~V~evm-  220 (610)
T COG2905         155 KTLPAVTVSPQASIQDAARKMKDEGVSSLVVLDD---SG---PLLGIVTRKDLRSRVIADGRS-------KTQKVSEVM-  220 (610)
T ss_pred             hcCCCcccCccCcHHHHHHHHHhcCCCeEEEEcC---CC---CccceeehHHHHHHHHhcCCC-------cccchhhhh-
Confidence            5788899999999999999999999999999952   34   589999999999987654222       134444444 


Q ss_pred             cccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHhc
Q 014342          337 GTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  399 (426)
Q Consensus       337 ~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~~  399 (426)
                                 ..|++++...+.+++|+-+|.+++|.++||++ +|+++|+||..||+++...
T Consensus       221 -----------T~p~~svd~~~~~feAml~m~r~~I~hl~V~e-~gq~~Gilt~~dIl~l~s~  271 (610)
T COG2905         221 -----------TSPVISVDRGDFLFEAMLMMLRNRIKHLPVTE-DGQPLGILTLTDILRLFSQ  271 (610)
T ss_pred             -----------ccCceeecCcchHHHHHHHHHHhCCceeeeec-CCeeeEEeeHHHHHHhhCC
Confidence                       36999999999999999999999999999997 6999999999999998874

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=99.35  E-value=8.3e-12  Score=123.33  Aligned_cols=114  Identities=17%  Similarity=0.200  Sum_probs=92.5

Q ss_pred             CCC--CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccc
Q 014342          257 CPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSI  334 (426)
Q Consensus       257 ~~~--~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l  334 (426)
                      |.+  +++++.+++++.+|++.|.+++...+||++   ++|   +++|++|..|+.+.+....       .+...++.++
T Consensus       208 m~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd---~~g---~lvGivt~~Dl~~~~~~~~-------~~~~~~v~~i  274 (326)
T PRK10892        208 MHTGDEIPHVSKTASLRDALLEITRKNLGMTVICD---DNM---KIEGIFTDGDLRRVFDMGI-------DLRQASIADV  274 (326)
T ss_pred             hCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEc---CCC---cEEEEEecHHHHHHHhcCC-------CcccCCHHHh
Confidence            555  889999999999999999999888888885   345   7999999999987543210       1123345555


Q ss_pred             cccccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHH
Q 014342          335 QLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITAL  396 (426)
Q Consensus       335 ~i~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~  396 (426)
                      |            .++++++.+++++.+|+++|.+++++++||+| +|+++|+||++||++.
T Consensus       275 m------------~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~-~~~lvGiit~~dil~~  323 (326)
T PRK10892        275 M------------TPGGIRVRPGILAVDALNLMQSRHITSVLVAD-GDHLLGVLHMHDLLRA  323 (326)
T ss_pred             c------------CCCCEEECCCCCHHHHHHHHHHCCCcEEEEee-CCEEEEEEEhHHhHhc
Confidence            4            25788999999999999999999999999998 5899999999999863

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.35  E-value=1.9e-11  Score=100.12  Aligned_cols=108  Identities=23%  Similarity=0.420  Sum_probs=88.7

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccccccc
Q 014342          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (426)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  339 (426)
                      +++++.+++++.++++.|.+++++++||++   + +   +++|+++..|+++.......         ..++.+++    
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~-~---~~~G~v~~~~l~~~~~~~~~---------~~~v~~~~----   61 (110)
T cd04588           2 PLITLNPNATLREAARLFNTHHIHGAPVVD---D-G---KLVGIVTLSDIAHAIARGLE---------LAKVKDVM----   61 (110)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCEEEEee---C-C---EEEEEEEHHHHHHHHhcccc---------ccCHHHHh----
Confidence            467789999999999999999999999995   2 5   79999999999986543211         12233322    


Q ss_pred             ccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342          340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (426)
Q Consensus       340 ~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~  395 (426)
                              ..++.++.+++++.++++.|.+.++..+||+|++|+++|+|++.||++
T Consensus        62 --------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~  109 (110)
T cd04588          62 --------TKDVITIDEDEQLYDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDILR  109 (110)
T ss_pred             --------cCCceEECCCCCHHHHHHHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence                    146778999999999999999999999999998899999999999874

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=99.35  E-value=9.6e-12  Score=102.64  Aligned_cols=110  Identities=13%  Similarity=0.225  Sum_probs=86.3

Q ss_pred             cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhc
Q 014342          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (426)
Q Consensus       166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~  245 (426)
                      +++++..+.++.+|++.|.+++...+||+|+ +++++|++|..|+.....   .        .....++..         
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~-~~~~~G~v~~~dl~~~~~---~--------~~~~~~v~~---------   60 (111)
T cd04603           2 QTVSVNCENPLREAIKMINELGARAVVVVDE-ENKVLGQVTLSDLLEIGP---N--------DYETLKVCE---------   60 (111)
T ss_pred             ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcC-CCCEEEEEEHHHHHhhcc---c--------cccccChhh---------
Confidence            4678899999999999999999999999985 479999999999865211   0        000001111         


Q ss_pred             cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHH
Q 014342          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (426)
Q Consensus       246 ~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~  312 (426)
                                .|..++.++.+++++.+|++.|.+++.+++||+|+   +|   +++|++|.+|++++
T Consensus        61 ----------~~~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~---~~---~~~Giit~~di~~~  111 (111)
T cd04603          61 ----------VYIVPVPIVYCDSKVTDLLRIFRETEPPVVAVVDK---EG---KLVGTIYERELLRF  111 (111)
T ss_pred             ----------eeecCCcEECCCCcHHHHHHHHHHcCCCeEEEEcC---CC---eEEEEEEhHHhhcC
Confidence                      13456788999999999999999999999999952   35   79999999999863

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=99.35  E-value=9.2e-12  Score=122.72  Aligned_cols=113  Identities=17%  Similarity=0.222  Sum_probs=93.6

Q ss_pred             CCCC--ceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccc
Q 014342          257 CPRP--LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSI  334 (426)
Q Consensus       257 ~~~~--~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l  334 (426)
                      |.++  ++++.+++++.+|++.|.+.+...+||+|   ++|   +++|++|..|+.+.+....        ....++.++
T Consensus       203 m~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd---~~g---~~iG~vt~~dl~~~~~~~~--------~~~~~v~~i  268 (321)
T PRK11543        203 MRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCD---AQQ---QVQGVFTDGDLRRWLVGGG--------ALTTPVNEA  268 (321)
T ss_pred             hccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEc---CCC---cEEEEecHHHHHHHHhCCC--------CcCCcHHHh
Confidence            4565  89999999999999999999999999995   245   6999999999988654221        112334444


Q ss_pred             cccccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342          335 QLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (426)
Q Consensus       335 ~i~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~  395 (426)
                      +            .+++.++.+++++.+|+++|.++++..+||||++|+++|+||++||++
T Consensus       269 m------------~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~  317 (321)
T PRK11543        269 M------------TRGGTTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQ  317 (321)
T ss_pred             c------------CCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHh
Confidence            4            247778999999999999999999999999998899999999999986

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.35  E-value=1.5e-11  Score=100.89  Aligned_cols=109  Identities=22%  Similarity=0.401  Sum_probs=88.3

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccccccc
Q 014342          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (426)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  339 (426)
                      ++.++.+++++.++++.|.+++.+++||++   + +   +++|+++..++++.+.....       ....++.+++    
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~---~-~---~~~G~v~~~~l~~~~~~~~~-------~~~~~i~~~~----   63 (111)
T cd04800           2 PPVTCSPDTTIREAARLMTEHRVSSLLVVD---D-G---RLVGIVTDRDLRNRVVAEGL-------DPDTPVSEVM----   63 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEEE---C-C---EEEEEEEhHHHHHHHhccCC-------CccCCHHHHh----
Confidence            457789999999999999999999999995   2 5   69999999999876543210       0122333332    


Q ss_pred             ccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342          340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (426)
Q Consensus       340 ~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~  395 (426)
                              .++++++.+++++.+|+++|.+++.+++||+++ |+++|++|++||++
T Consensus        64 --------~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Giit~~di~~  110 (111)
T cd04800          64 --------TAPPITIPPDATVFEALLLMLERGIHHLPVVDD-GRLVGVISATDLLR  110 (111)
T ss_pred             --------CCCCeEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence                    246778999999999999999999999999997 99999999999975

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=99.34  E-value=2.4e-11  Score=99.60  Aligned_cols=108  Identities=20%  Similarity=0.421  Sum_probs=88.9

Q ss_pred             CCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccccccc
Q 014342          259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  338 (426)
Q Consensus       259 ~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~  338 (426)
                      ++++++.++.++.+|.+.|.+++..++||++   + +   +++|+++..|+++.+....         ...++.+++   
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d---~-~---~~~G~v~~~dl~~~~~~~~---------~~~~~~~~~---   62 (110)
T cd04595           2 SPVKTVRPEATIEEARELLLRYGHTALPVVE---G-G---RVVGIISRRDVEKALRHGL---------GHAPVKDYM---   62 (110)
T ss_pred             CCceEeCCCCcHHHHHHHHHHcCCCeeeEee---C-C---EEEEEEEHHHHHHHHhccc---------ccCcHHHHh---
Confidence            3567899999999999999988999999995   2 5   7999999999988653221         123344443   


Q ss_pred             cccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342          339 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (426)
Q Consensus       339 ~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~  395 (426)
                               .+++.++.+++++.+|+++|.+++.+.+||+| +|+++|+||+.||++
T Consensus        63 ---------~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Gvvt~~di~~  109 (110)
T cd04595          63 ---------STDVVTVPPDTPLSEVQELMVEHDIGRVPVVE-DGRLVGIVTRTDLLR  109 (110)
T ss_pred             ---------cCCCEEECCCCcHHHHHHHHHHcCCCeeEEEe-CCEEEEEEEhHHhhc
Confidence                     14677899999999999999999999999999 799999999999874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=99.33  E-value=1.2e-11  Score=105.58  Aligned_cols=118  Identities=20%  Similarity=0.351  Sum_probs=89.7

Q ss_pred             CCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCC-------c-------
Q 014342          259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSS-------L-------  324 (426)
Q Consensus       259 ~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~-------~-------  324 (426)
                      +++.++.+++++.++++.|.+++.+++||++   +++   +++|+++..|+++.+..........       .       
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd---~~~---~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (135)
T cd04586           2 TDVVTVSPETSVAEAARLMLDNHISGLPVVD---DDG---RLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAF   75 (135)
T ss_pred             CCCEEeCCCCCHHHHHHHHHHcCCCCceEEC---CCC---CEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHH
Confidence            4577899999999999999999999999995   235   6999999999987654321100000       0       


Q ss_pred             -cccccccccccccccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342          325 -PILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (426)
Q Consensus       325 -~~~~~~v~~l~i~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~  395 (426)
                       .....++.++            +.+++.++.+++++.+|++.|.+++.+.+||+| +|+++|+||+.||++
T Consensus        76 ~~~~~~~v~~~------------~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~g~~~Gvit~~di~~  134 (135)
T cd04586          76 VRSHGRKVADV------------MTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR-GGRLVGIVSRADLLR  134 (135)
T ss_pred             HHhcCCCHHHH------------hCCCceEeCCCCcHHHHHHHHHHcCCCccCEec-CCEEEEEEEhHhhhc
Confidence             0001122222            235778899999999999999999999999999 799999999999875

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.33  E-value=2.7e-11  Score=99.63  Aligned_cols=111  Identities=15%  Similarity=0.207  Sum_probs=88.6

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccccccc
Q 014342          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (426)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  339 (426)
                      ++.++.+++++.++++.|.+++.+.+||++   . +   +++|+++..|+++.+.....      .....++.+++    
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~---~-~---~~~G~v~~~dl~~~~~~~~~------~~~~~~v~~i~----   64 (113)
T cd04587           2 KPATVSPTTTVQEAAKLMREKRVSCVLVMD---G-N---KLVGIFTSKDIALRVVAQGL------DPESTLVERVM----   64 (113)
T ss_pred             CCeEeCCCCCHHHHHHHHHHcCCCeEEEEE---C-C---EEEEEEEhHHHHHHHHhcCC------CcCcCCHHHhc----
Confidence            456789999999999999999999999995   2 5   79999999999865443211      01113344433    


Q ss_pred             ccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342          340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (426)
Q Consensus       340 ~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~  395 (426)
                              .+++.++.+++++.+|++.|.+++...+||++++|+++|+||..||+.
T Consensus        65 --------~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~  112 (113)
T cd04587          65 --------TPNPVCATSDTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTH  112 (113)
T ss_pred             --------CCCCeEEcCCCCHHHHHHHHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence                    246678999999999999999999999999998899999999999863

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>COG0517 FOG: CBS domain [General function prediction only]

Probab=99.33  E-value=2.2e-11  Score=100.71  Aligned_cols=110  Identities=27%  Similarity=0.526  Sum_probs=91.8

Q ss_pred             CCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccccc
Q 014342          258 PRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLG  337 (426)
Q Consensus       258 ~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~  337 (426)
                      .+.++++.+++++.+|...|.+++++++||++.    +   +++|++|.+|+++.+.......        .++.+++  
T Consensus         6 ~~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~----~---~l~Giit~~di~~~~~~~~~~~--------~~v~~v~--   68 (117)
T COG0517           6 TKDVITVKPDTSVRDALLLMSENGVSAVPVVDD----G---KLVGIITERDILRALAAGGKRL--------LPVKEVM--   68 (117)
T ss_pred             cCCCEEECCCCcHHHHHHHHHHcCCCEEEEeeC----C---EEEEEEEHHHHHHHHhccCCcc--------ccHHHhc--
Confidence            467789999999999999999999999999952    2   5999999999999887543221        0233333  


Q ss_pred             ccccccCCCCCCCeEEEcCCCCHHHHHHHHHh-cCCcEeeEEcCCC-cEEEEEeHHHHH
Q 014342          338 TWVPRIGEANGRPFAMLRPTASLGSALALLVQ-ADVSSIPIVDDND-SLLDIYSRSDIT  394 (426)
Q Consensus       338 ~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~-~~i~~lPVVd~~g-~lvGiis~~DI~  394 (426)
                                .++++++.+++++.+|+++|.+ ++++++||+|+++ +++|++|++||+
T Consensus        69 ----------~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~  117 (117)
T COG0517          69 ----------TKPVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDIL  117 (117)
T ss_pred             ----------cCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence                      2478899999999999999999 7999999999986 999999999973

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.33  E-value=2.4e-11  Score=101.28  Aligned_cols=114  Identities=19%  Similarity=0.293  Sum_probs=87.5

Q ss_pred             cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhc
Q 014342          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (426)
Q Consensus       166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~  245 (426)
                      ++++++++.++.+|++.|.++++..+||+|. +++++|++|..|+........         +....++..+        
T Consensus         2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~-~~~~~Givt~~dl~~~~~~~~---------~~~~~~~~~~--------   63 (118)
T cd04617           2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDE-DGDLVGVVSRKDLLKASIGGA---------DLQKVPVGVI--------   63 (118)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCCEEEEEEHHHHHHHHHcCC---------CccCCCHHHH--------
Confidence            4678999999999999999999999999995 478999999999877543110         0011111111        


Q ss_pred             cccccCCCCCCCC--CCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342          246 LKRQMDGNGRPCP--RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (426)
Q Consensus       246 ~~~~~~g~~~~~~--~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~  311 (426)
                                 |.  .++.++.+++++.++++.|.+++++.+||+++++..+   +++|+||++||++
T Consensus        64 -----------~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~---~l~Gvit~~~l~~  117 (118)
T cd04617          64 -----------MTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGL---EVIGRITKTNITK  117 (118)
T ss_pred             -----------hCCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccc---eEEEEEEhhheec
Confidence                       23  3578999999999999999999999999996321125   7999999999865

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.33  E-value=2.5e-11  Score=99.48  Aligned_cols=109  Identities=23%  Similarity=0.354  Sum_probs=88.5

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccccccc
Q 014342          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (426)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  339 (426)
                      +++++.+++++.++++.|.+.+.+++||++   + +   +++|+++..|+++.......        ...++.+++    
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~-~---~~~G~v~~~dl~~~~~~~~~--------~~~~~~~~~----   62 (111)
T cd04612           2 DVVTVPVDLTVDEVLALMFGERHRGYPVVD---D-G---RLVGIVTLADIRRVPAEGRE--------ATVLVGDVM----   62 (111)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcceEee---C-C---eEEEEEEHHHHHHHHhcCcc--------cccCHHHhc----
Confidence            457899999999999999999999999995   2 5   69999999999876532110        001222222    


Q ss_pred             ccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342          340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (426)
Q Consensus       340 ~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~  395 (426)
                              .+++.++.+++++.+++++|.+++.+.+||+|++|+++|+||..||++
T Consensus        63 --------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~  110 (111)
T cd04612          63 --------TRDPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDLLR  110 (111)
T ss_pred             --------cCCCeEECCCCCHHHHHHHHHhCCCCeeeEEcCCCCEEEEEEHHHhhh
Confidence                    247788999999999999999999999999998899999999999975

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=99.33  E-value=1.8e-11  Score=100.24  Aligned_cols=105  Identities=17%  Similarity=0.271  Sum_probs=87.4

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccccccc
Q 014342          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (426)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  339 (426)
                      ++.++.+++++.+|+..|.+.+.+.+||++   ++|   +++|+++..+++...             ...++.+++.   
T Consensus         3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d---~~~---~~~G~v~~~~l~~~~-------------~~~~v~~~~~---   60 (108)
T cd04596           3 DTGYLTTTDTVKDWHELNKETGHSRFPVVD---EKN---KVVGIVTSKDVAGKD-------------PDTTIEKVMT---   60 (108)
T ss_pred             ccEEeCCCCCHHHHHHHHHHcCCCceeEEC---CCC---eEEEEecHHHHhccc-------------ccccHHHHhc---
Confidence            467889999999999999999999999995   245   799999999997421             0123333331   


Q ss_pred             ccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342          340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (426)
Q Consensus       340 ~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~  395 (426)
                               .++.++.+++++.+|+++|.+++...+||+|++|+++|++|+.||++
T Consensus        61 ---------~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~~  107 (108)
T cd04596          61 ---------KNPITVNPKTSVASVAHMMIWEGIEMLPVVDDNKKLLGIISRQDVLK  107 (108)
T ss_pred             ---------CCCeEECCCCCHHHHHHHHHHcCCCeeeEEcCCCCEEEEEEHHHhhc
Confidence                     36678999999999999999999999999999999999999999875

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.33  E-value=1.9e-11  Score=100.78  Aligned_cols=112  Identities=25%  Similarity=0.310  Sum_probs=89.1

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccccccc
Q 014342          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (426)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  339 (426)
                      ++.++.++.++.+|++.|.+++.+.+||++   +++   +++|+++..++++.+.......     ....++.+++    
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~---~~~---~~~G~v~~~~l~~~~~~~~~~~-----~~~~~v~~~~----   66 (114)
T cd04629           2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVD---DNG---NLVGFLSEQDCLKQLLESSYHC-----DGVATVRDIM----   66 (114)
T ss_pred             CCeEeCCCCCHHHHHHHHHhcCCCCccEEC---CCC---eEEEEeehHHHHHHhhhhhhcc-----CCCccHHHHh----
Confidence            457789999999999999998999999995   235   6999999999998765432110     0122333332    


Q ss_pred             ccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342          340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (426)
Q Consensus       340 ~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~  395 (426)
                              .+++.++.+++++.+|+++|.+++.+.+||+|+ |+++|+||..||++
T Consensus        67 --------~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~  113 (114)
T cd04629          67 --------TTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD-GKLVGQISRRDVLR  113 (114)
T ss_pred             --------ccCceEECCCCcHHHHHHHHHHhCCCccCEEEC-CEEEEEEEHHHHhc
Confidence                    246678999999999999999999999999997 99999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=99.33  E-value=3.2e-11  Score=98.79  Aligned_cols=109  Identities=24%  Similarity=0.428  Sum_probs=89.2

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccccccc
Q 014342          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (426)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  339 (426)
                      ++.++.+++++.+|++.|.+.+.+.+||++   + +   +++|+++..|++++......        ...++.+++    
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~---~-~---~~~G~v~~~~l~~~~~~~~~--------~~~~v~~~~----   62 (111)
T cd04611           2 QILTCPPDTSLAEAASRMRERRISSIVVVD---D-G---RPLGIVTERDILRLLASGPD--------LQTPVGEVM----   62 (111)
T ss_pred             CceEECCCCcHHHHHHHHHHcCCCEEEEee---C-C---EEEEEEeHHHHHHHHhcCCC--------CCcCHHHhc----
Confidence            356789999999999999998999999995   2 5   79999999999987643211        122333332    


Q ss_pred             ccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342          340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (426)
Q Consensus       340 ~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~  395 (426)
                              .++++++.+++++.++++.|.+.+.+.+||+|++|+++|+|+++||++
T Consensus        63 --------~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~  110 (111)
T cd04611          63 --------SSPLLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ  110 (111)
T ss_pred             --------CCCceEECCCCCHHHHHHHHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence                    246778999999999999999999999999998899999999999875

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.32  E-value=1.8e-11  Score=102.17  Aligned_cols=116  Identities=24%  Similarity=0.490  Sum_probs=89.1

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCC---Cccccccccccccc
Q 014342          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSS---SLPILQQPVSSIQL  336 (426)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~---~~~~~~~~v~~l~i  336 (426)
                      +++++.+++++.++++.|.+++.+++||++   . |   +++|+++..++++.+.........   ...+...++.++  
T Consensus         2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~---~-~---~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--   72 (121)
T cd04633           2 PVITVSPDDRVSHARRLMLDHDISRLPVIE---G-G---KLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSDI--   72 (121)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeeEEEE---C-C---EEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHHH--
Confidence            467889999999999999999999999995   2 5   799999999999876532211000   000111122222  


Q ss_pred             cccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342          337 GTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (426)
Q Consensus       337 ~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~  395 (426)
                         +       ..++.++.+++++.+|+++|.+.+.+.+||+|+ |+++|+||++|+++
T Consensus        73 ---~-------~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~dl~~  120 (121)
T cd04633          73 ---M-------TRPVITIEPDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRTDILR  120 (121)
T ss_pred             ---c-------cCCceEECCCCcHHHHHHHHHHcCCCcccEEEC-CEEEEEEEHHHhhc
Confidence               2       247788999999999999999999999999997 99999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=99.32  E-value=2.3e-11  Score=100.18  Aligned_cols=111  Identities=21%  Similarity=0.385  Sum_probs=89.7

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccccccc
Q 014342          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (426)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  339 (426)
                      ++.++.+++++.++++.|.+.+.+++||+++   ++   +++|+++..++++.+......       ...++.+++    
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~---~~---~~~G~v~~~~i~~~~~~~~~~-------~~~~v~~~~----   65 (114)
T cd04604           3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDE---DG---RLVGIFTDGDLRRALEKGLDI-------LTLPVADVM----   65 (114)
T ss_pred             cccccCCCCcHHHHHHHHHhcCccEEEEEcC---CC---CEEEEechHHHHHHHhccCcc-------ccCCHHHhh----
Confidence            3456889999999999998888999999952   35   699999999999877643211       112333333    


Q ss_pred             ccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342          340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (426)
Q Consensus       340 ~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~  395 (426)
                              .+++.++.+++++.+|+++|.+++...+||+|++|+++|+|+..||++
T Consensus        66 --------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~~  113 (114)
T cd04604          66 --------TRNPKTIDPDALAAEALELMEENKITALPVVDDNGRPVGVLHIHDLLR  113 (114)
T ss_pred             --------ccCCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence                    246678999999999999999999999999998899999999999975

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.32  E-value=2.5e-11  Score=100.97  Aligned_cols=117  Identities=22%  Similarity=0.303  Sum_probs=89.9

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCc---cccccccccccc
Q 014342          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSL---PILQQPVSSIQL  336 (426)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~---~~~~~~v~~l~i  336 (426)
                      ++.++.++.++.++++.|.+.+...+||++  +  |   +++|+++..+++++............   .....++.++  
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d--~--~---~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--   72 (122)
T cd04585           2 NPITVTPDTSLMEALKLMKENSIRRLPVVD--R--G---KLVGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSDI--   72 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHhCCcceeeEec--C--C---eEEEEEeHHHHHHhhhcccccccchhhhhhhcccCHHHh--
Confidence            456789999999999999999999999995  2  5   69999999999987643221110000   0001122222  


Q ss_pred             cccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342          337 GTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (426)
Q Consensus       337 ~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~  395 (426)
                                +.+++.++.+++++.++++.|.+++.+.+||+|++|+++|+||+.||++
T Consensus        73 ----------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~  121 (122)
T cd04585          73 ----------MTRDPITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFR  121 (122)
T ss_pred             ----------ccCCCeEeCCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence                      2357788999999999999999999999999998899999999999975

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.32  E-value=2.3e-11  Score=104.42  Aligned_cols=116  Identities=18%  Similarity=0.310  Sum_probs=88.9

Q ss_pred             ceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccc-cCCC---------------c
Q 014342          261 LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKH-SSSS---------------L  324 (426)
Q Consensus       261 ~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~-~~~~---------------~  324 (426)
                      +.++.+++++.+|+..|.+++...+||+|   +.+   +++|+++..|+++.+...... ....               .
T Consensus         3 ~~~v~~~~~~~~a~~~~~~~~~~~l~V~d---~~~---~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (135)
T cd04621           3 IATVHPEHSLLHVVDEMEKNGVGRVIVVD---DNG---KPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRYV   76 (135)
T ss_pred             ceEeCCCCcHHHHHHHHHHcCCCcceEEC---CCC---CEEEEEeHHHHHHHhhcccccccchhhhhhhhhccccccccc
Confidence            46789999999999999999999999995   235   699999999999876432110 0000               0


Q ss_pred             cccccccccccccccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342          325 PILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (426)
Q Consensus       325 ~~~~~~v~~l~i~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~  395 (426)
                      .....++.++            +.+++.++.+++++.+|++.|.+++++.+||+++ |+++|+||++||++
T Consensus        77 ~~~~~~v~~~------------~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~Gvit~~di~~  134 (135)
T cd04621          77 KEVPLVAEDI------------MTEEIITVSPNDDVVDAAKLMLEANISGLPVVDN-DNIVGVITKTDICR  134 (135)
T ss_pred             ccccccHHHh------------cCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeC-CEEEEEEEHHHHhh
Confidence            0001223333            2357788999999999999999999999999997 99999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.32  E-value=2e-11  Score=103.85  Aligned_cols=117  Identities=21%  Similarity=0.375  Sum_probs=89.5

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCC---Ccc----------c
Q 014342          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSS---SLP----------I  326 (426)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~---~~~----------~  326 (426)
                      +++++.+++++.+|++.|.+.+++++||+|+   ++   +++|+++..++++++.........   ...          +
T Consensus         2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~---~~---~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (132)
T cd04636           2 DVITVKKDDTLRDVVEILLTGKISGVPVVDN---EG---RVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKL   75 (132)
T ss_pred             CCeEeCCCCcHHHHHHHHHHhCCCccceECC---CC---CEEEEEeHHHHHHHHhccCCcccccccccccccchHHHHHH
Confidence            4578899999999999999999999999952   35   699999999999877543211000   000          0


Q ss_pred             cccccccccccccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342          327 LQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (426)
Q Consensus       327 ~~~~v~~l~i~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~  395 (426)
                      ...++.++            +.+++.++.+++++.+|+++|.+++.+.+||+|+ |+++|++|++|+++
T Consensus        76 ~~~~v~~~------------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~iGvit~~dl~~  131 (132)
T cd04636          76 LGKKVEEI------------MTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD-GKLVGIISRGDIIR  131 (132)
T ss_pred             cCCCHHHh------------ccCCceEECCCCcHHHHHHHHHHCCCCeeEEEEC-CEEEEEEEHHHhhc
Confidence            00122222            2356788999999999999999999999999998 99999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.31  E-value=4.3e-11  Score=97.66  Aligned_cols=106  Identities=21%  Similarity=0.346  Sum_probs=87.4

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccccccc
Q 014342          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (426)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  339 (426)
                      .+..+.++.++.+++..|.+++..++||+++   ++   +++|+++..|+++.....            .++.+++    
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~---~~---~~~G~v~~~dl~~~~~~~------------~~v~~~~----   60 (109)
T cd04583           3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDK---DN---KLLGIVSLESLEQAYKEA------------KSLEDIM----   60 (109)
T ss_pred             CCEEECCCCCHHHHHHHHHHCCCceEEEEcC---CC---cEEEEEEHHHHHHHhhcC------------CcHhHhh----
Confidence            4567899999999999999999999999952   35   699999999998754211            1233333    


Q ss_pred             ccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342          340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (426)
Q Consensus       340 ~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~  395 (426)
                              .+.+.++.+++++.+|++.|.+++.+.+||+|++|+++|++|+.|+++
T Consensus        61 --------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~~  108 (109)
T cd04583          61 --------LEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLITRSSLVD  108 (109)
T ss_pred             --------cCCceEECCCCcHHHHHHHHHHcCCceeeEECCCCeEEEEEehHHhhc
Confidence                    135678999999999999999999999999999899999999999874

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.31  E-value=1.7e-11  Score=126.67  Aligned_cols=111  Identities=18%  Similarity=0.206  Sum_probs=91.9

Q ss_pred             eEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccccccccc
Q 014342          262 VQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVP  341 (426)
Q Consensus       262 v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~~  341 (426)
                      +++.|++++.+|++.|.+++++.+||+|+..+++   +++|+||..||....           ...+.++.++|...   
T Consensus       108 ~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~g---kLvGIVT~~DLr~~~-----------~~~~~~V~dIMt~~---  170 (502)
T PRK07107        108 SNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHG---KLLGIVTSRDYRISR-----------MSLDTKVKDFMTPF---  170 (502)
T ss_pred             CEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCC---EEEEEEEcHHhhccc-----------cCCCCCHHHHhCCC---
Confidence            5899999999999999999999999996321246   799999999985320           11245566666311   


Q ss_pred             ccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHH
Q 014342          342 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITAL  396 (426)
Q Consensus       342 ~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~  396 (426)
                             .+++++.+++++.+|+++|.+++++.|||||++|+++|+||++||++.
T Consensus       171 -------~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~  218 (502)
T PRK07107        171 -------EKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSH  218 (502)
T ss_pred             -------CCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhc
Confidence                   278899999999999999999999999999998999999999999875

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.31  E-value=3.3e-11  Score=100.73  Aligned_cols=117  Identities=24%  Similarity=0.354  Sum_probs=90.7

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCC---ccccccccccccc
Q 014342          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSS---LPILQQPVSSIQL  336 (426)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~---~~~~~~~v~~l~i  336 (426)
                      +++++.+++++.+|++.|.+.+++++||++   + |   +++|+++..++++.+..........   ......++.+++ 
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d---~-~---~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   73 (122)
T cd04637           2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVE---D-N---ELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQIM-   73 (122)
T ss_pred             CceEeCCCCCHHHHHHHHHhCCCCEEEEEe---C-C---eEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHHhh-
Confidence            357789999999999999999999999995   2 5   6999999999998765432110000   000112233222 


Q ss_pred             cccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342          337 GTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (426)
Q Consensus       337 ~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~  395 (426)
                                 .++++++.+++++.+|++.|.+++...+||+|++|+++|++++.|+++
T Consensus        74 -----------~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~  121 (122)
T cd04637          74 -----------TRDPITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLK  121 (122)
T ss_pred             -----------cCCCeeeCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhh
Confidence                       257788999999999999999999999999998899999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=99.31  E-value=2.6e-11  Score=125.43  Aligned_cols=118  Identities=14%  Similarity=0.162  Sum_probs=96.6

Q ss_pred             CCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccccc
Q 014342          257 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL  336 (426)
Q Consensus       257 ~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i  336 (426)
                      |.++++++.+++++.+|+++|.+++++.+||+|++..++   +++|+||..|+....            ..+.+|.++|.
T Consensus       106 mi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~G---klvGIVT~~DL~~v~------------~~~~~V~eIMt  170 (505)
T PLN02274        106 FVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGS---KLLGYVTKRDWDFVN------------DRETKLSEVMT  170 (505)
T ss_pred             ccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCC---eEEEEEEHHHHhhcc------------ccCCcHHHHhc
Confidence            457889999999999999999999999999996311135   799999999986421            12445666652


Q ss_pred             cccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHhc
Q 014342          337 GTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  399 (426)
Q Consensus       337 ~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~~  399 (426)
                      ..          .+++++.+++++.+|+++|.+++++.+||||++|+++|+||++||++....
T Consensus       171 ~~----------~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~  223 (505)
T PLN02274        171 SD----------DDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGY  223 (505)
T ss_pred             cC----------CCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhC
Confidence            11          137899999999999999999999999999999999999999999987654

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.31  E-value=2.6e-11  Score=102.30  Aligned_cols=125  Identities=26%  Similarity=0.360  Sum_probs=89.6

Q ss_pred             cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhc
Q 014342          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (426)
Q Consensus       166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~  245 (426)
                      ++++++++.++.+|++.|.++++..+||+|++ ++++|+++..|+...........      .........+........
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~   74 (126)
T cd04642           2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEK-GKLIGNISASDLKGLLLSPDDLL------LYRTITFKELSEKFTDSD   74 (126)
T ss_pred             CeEEECCCccHHHHHHHHHHhCCCcccEECCC-CcEEEEEEHHHhhhhhcCcchhh------cccchhhhhhhhhccccc
Confidence            57889999999999999999999999999964 79999999999876542111000      000000000000000000


Q ss_pred             cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHH
Q 014342          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (426)
Q Consensus       246 ~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~  312 (426)
                               ..+..+++++.+++++.+|+++|.+++.+++||+++   ++   +++|++|..||+++
T Consensus        75 ---------~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~---~~---~~~Giit~~dil~~  126 (126)
T cd04642          75 ---------GVKSRPLITCTPSSTLKEVITKLVANKVHRVWVVDE---EG---KPIGVITLTDIISI  126 (126)
T ss_pred             ---------ccccCCCeEECCCCcHHHHHHHHHHhCCcEEEEECC---CC---CEEEEEEHHHHhcC
Confidence                     124567889999999999999999999999999952   35   69999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.30  E-value=4.2e-11  Score=99.10  Aligned_cols=109  Identities=18%  Similarity=0.278  Sum_probs=84.7

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccccccc
Q 014342          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (426)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  339 (426)
                      +++++.+++++.+|++.|.+++...+||+|+...+|   +++|+++..|++.... .           ..++.+++.   
T Consensus         3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~---~~~G~v~~~dl~~~~~-~-----------~~~v~~~~~---   64 (114)
T cd04602           3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGG---KLLGIVTSRDIDFLTD-S-----------ETPLSEVMT---   64 (114)
T ss_pred             CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCC---EEEEEEEhHHhhhhhc-c-----------CCCHHHhcC---
Confidence            356788999999999999999999999996311145   7999999999864211 0           122444432   


Q ss_pred             ccccCCCCCCCeEEEcC--CCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342          340 VPRIGEANGRPFAMLRP--TASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (426)
Q Consensus       340 ~~~~~~~~~~~v~tv~~--~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~  395 (426)
                               ++..++..  ++++.+|++.|.+++...+||||++|+++|+||++||++
T Consensus        65 ---------~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~  113 (114)
T cd04602          65 ---------PREVLVVAPTGITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLKK  113 (114)
T ss_pred             ---------CCceEEECCCCCCHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence                     23445555  999999999999999999999998899999999999874

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=99.30  E-value=7e-11  Score=114.52  Aligned_cols=171  Identities=15%  Similarity=0.212  Sum_probs=122.4

Q ss_pred             HHHHHHH--hccccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCC
Q 014342          145 RDRISSF--LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGS  222 (426)
Q Consensus       145 ~~~~~~~--l~~~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~  222 (426)
                      ++-+...  |.+.++.++|..-..+++++.+.|+.++++.+.+++.+.+||++.+.++++|+|+.+|++..+.   ....
T Consensus        55 ~~~i~~vl~l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~---~~~~  131 (292)
T PRK15094         55 RDMLEGVMDIADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMR---SDAE  131 (292)
T ss_pred             HHHHHHHhccCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhh---ccCC
Confidence            3344444  5688999999887789999999999999999999999999999865578999999999875432   1000


Q ss_pred             CCChhhhcccchhhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEE
Q 014342          223 NLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILY  302 (426)
Q Consensus       223 ~~~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvG  302 (426)
                      .        ..+..+                   |. +++++.+++++.++++.|.+++.+.+||+|   +.|   .++|
T Consensus       132 ~--------~~l~~l-------------------~r-~~~~V~e~~~l~~~L~~m~~~~~~~a~VvD---e~G---~viG  177 (292)
T PRK15094        132 A--------FSMDKV-------------------LR-QAVVVPESKRVDRMLKEFRSQRYHMAIVID---EFG---GVSG  177 (292)
T ss_pred             c--------CCHHHH-------------------cC-CCcCcCCCCcHHHHHHHHHhcCCEEEEEEe---CCC---CEEE
Confidence            0        011111                   23 445899999999999999999999999996   235   5999


Q ss_pred             EecHHhHHHHHHhhccccCCCccccccccccccccccccccCCCCCCCeEEEcCCCCHHHHHHHH
Q 014342          303 LASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALL  367 (426)
Q Consensus       303 iit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m  367 (426)
                      +||..||+..+......-..  ..-...+..+.-             .-..+....++.+..+.+
T Consensus       178 iVTleDIle~ivGei~de~d--~~~~~~i~~~~~-------------~~~~v~G~~~l~dl~~~l  227 (292)
T PRK15094        178 LVTIEDILELIVGEIEDEYD--EEDDIDFRQLSR-------------HTWTVRALASIEDFNEAF  227 (292)
T ss_pred             EeEHHHHHHHHhCCCccccc--cccccccEEeCC-------------CeEEEEeccCHHHHHHHh
Confidence            99999999998764332110  000011222222             234577888888887776

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.30  E-value=4.5e-11  Score=98.27  Aligned_cols=109  Identities=19%  Similarity=0.392  Sum_probs=86.4

Q ss_pred             ceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccccccccc
Q 014342          261 LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWV  340 (426)
Q Consensus       261 ~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~  340 (426)
                      +.++.+++++.++++.|.+++.+.++|.+   + |   +++|+++..|+++.+......      ....++.+++     
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~~---~-~---~~~G~v~~~dl~~~~~~~~~~------~~~~~v~~~~-----   64 (112)
T cd04625           3 IYTVAPETLLSEAVATMAEQDLGSLVVME---R-G---ELVGLLTFREVLQAMAQHGAG------VLDTTVRAIM-----   64 (112)
T ss_pred             cEEECCCCcHHHHHHHHHHcCCCeEEEee---C-C---EEEEEEEHHHHHHHHHhcCCc------hhcCCHHHHh-----
Confidence            46789999999999999888888887763   2 5   799999999999876532111      1122344433     


Q ss_pred             cccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342          341 PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (426)
Q Consensus       341 ~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~  395 (426)
                             .+++.++.+++++.+|+++|.+++...+||+| +|+++|+||++||++
T Consensus        65 -------~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~-~~~~~Gvvt~~dl~~  111 (112)
T cd04625          65 -------NPEPIVASPDDSIDEVRRLMVERHLRYLPVLD-GGTLLGVISFHDVAK  111 (112)
T ss_pred             -------CCCCeEECCCCCHHHHHHHHHHcCCCeeeEEE-CCEEEEEEEHHHhhc
Confidence                   24667899999999999999999999999998 589999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.30  E-value=5e-11  Score=98.05  Aligned_cols=110  Identities=20%  Similarity=0.340  Sum_probs=87.7

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH-HHHhhccccCCCccccccccccccccc
Q 014342          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK-CICRHFKHSSSSLPILQQPVSSIQLGT  338 (426)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~-~l~~~~~~~~~~~~~~~~~v~~l~i~~  338 (426)
                      ++.++.+++++.+|.+.|.+++.+++||++   + |   +++|+++..+++. .+....       .....++.+++.  
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~---~-~---~~~G~i~~~~l~~~~~~~~~-------~~~~~~~~~~~~--   65 (113)
T cd04622           2 DVVTVSPDDTIREAARLMREHDVGALPVCE---N-D---RLVGIVTDRDIVVRAVAEGR-------DPDTTTVGDVMT--   65 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEee---C-C---EEEEEEEhHHHHHHHhhccC-------CcccCCHHHhcc--
Confidence            457889999999999999999999999995   2 5   7999999999873 332211       111122444431  


Q ss_pred             cccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342          339 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (426)
Q Consensus       339 ~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~  395 (426)
                                ..+.++.+++++.++++.|.+.+.+++||+|++|+++|++++.|+++
T Consensus        66 ----------~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~  112 (113)
T cd04622          66 ----------RGVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLAR  112 (113)
T ss_pred             ----------CCccEECCCCCHHHHHHHHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence                      35678999999999999999999999999998899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.30  E-value=5e-11  Score=97.93  Aligned_cols=109  Identities=15%  Similarity=0.241  Sum_probs=87.8

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccccccc
Q 014342          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (426)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  339 (426)
                      +++++.++.++.++++.|.+++...+||++   + +   +++|+++..++++.+.....       ....++.+++    
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d---~-~---~~~G~v~~~~l~~~~~~~~~-------~~~~~i~~~~----   63 (111)
T cd04589           2 PPLIVDASTSIRDAARLMREHGADALLVRD---G-D---PRLGIVTRTDLLDAVLLDGL-------PSSTPVGEIA----   63 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEec---C-C---eEEEEEEHHHHHHHHHcCCC-------CCCCCHHHHh----
Confidence            356789999999999999999999999995   2 4   69999999999886542110       1123344433    


Q ss_pred             ccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342          340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (426)
Q Consensus       340 ~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~  395 (426)
                              .+++.++++++++.+++++|.+++...+||+|+ |+++|+||..|+++
T Consensus        64 --------~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~dl~~  110 (111)
T cd04589          64 --------TFPLITVDPDDFLFNALLLMTRHRIHRVVVREG-GEVVGVLEQTDLLS  110 (111)
T ss_pred             --------CCCcEEECCCCcHHHHHHHHHHhCccEEEEeeC-CEEEEEEEhHHhhc
Confidence                    246778999999999999999999999999985 89999999999875

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.30  E-value=3e-11  Score=100.91  Aligned_cols=118  Identities=22%  Similarity=0.403  Sum_probs=89.0

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCc--ccccccccccccc
Q 014342          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSL--PILQQPVSSIQLG  337 (426)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~--~~~~~~v~~l~i~  337 (426)
                      .++++.+++++.++++.|.+.+.+++||++   ..|   +++|+++..++++.............  .....++.+++  
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d---~~~---~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--   73 (122)
T cd04635           2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQ---KAG---ELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEKIM--   73 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcccEEC---CCC---cEEEEEEcHHHHhhccccccccchhhhhhhccCcHHHHh--
Confidence            467899999999999999999999999995   235   69999999999875321100000000  00112222222  


Q ss_pred             ccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342          338 TWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (426)
Q Consensus       338 ~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~  395 (426)
                                .+++.++.+++++.++++.|.+++.+.+||+|++|+++|++|+.||++
T Consensus        74 ----------~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~  121 (122)
T cd04635          74 ----------STPVYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLK  121 (122)
T ss_pred             ----------cCCCeeECCCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhc
Confidence                      246788999999999999999999999999998899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.30  E-value=7.4e-11  Score=97.69  Aligned_cols=112  Identities=25%  Similarity=0.383  Sum_probs=87.7

Q ss_pred             cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhc
Q 014342          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (426)
Q Consensus       166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~  245 (426)
                      ++.++..++|+.+|++.|.+++...+||+|+ +++++|++|..|+...+......        ....++..+        
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~-~g~~~G~vt~~dl~~~~~~~~~~--------~~~~~v~~~--------   64 (114)
T cd04619           2 RLAKIDVNATLQRAAKILGEPGIDLVVVCDP-HGKLAGVLTKTDVVRQMGRCGGP--------GCTAPVENV--------   64 (114)
T ss_pred             ceEEECCCCcHHHHHHHHHhcCCCEEEEECC-CCCEEEEEehHHHHHHHhhcCCC--------cccCCHHHH--------
Confidence            4778899999999999999999999999995 47899999999987654321000        000011111        


Q ss_pred             cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (426)
Q Consensus       246 ~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~  311 (426)
                                 |..+++++.+++++.+|++.|.+++.+++||+++   +|   +++|++|.+|+++
T Consensus        65 -----------~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~~---~~~Gvi~~~dl~~  113 (114)
T cd04619          65 -----------MTRAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDE---NA---RPLGVLNARDALK  113 (114)
T ss_pred             -----------hcCCCeeECCCCCHHHHHHHHHHcCCCeEEEECC---CC---cEEEEEEhHhhcc
Confidence                       3457788999999999999999999999999952   35   6999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.30  E-value=3.7e-11  Score=98.82  Aligned_cols=111  Identities=27%  Similarity=0.360  Sum_probs=89.5

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccccccc
Q 014342          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (426)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  339 (426)
                      ++.++.+++++.++++.|.+.++.++||+++   ++   +++|+++..++++++.....       ....++.+++    
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~---~~~G~v~~~~l~~~~~~~~~-------~~~~~v~~~~----   64 (114)
T cd04613           2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDD---DG---RLVGIVSLDDIREILFDPSL-------YDLVVASDIM----   64 (114)
T ss_pred             CceeeCCCCcHHHHHHHHHhCCCcceeEECC---CC---CEEEEEEHHHHHHHHhcccc-------cccEEHHHhc----
Confidence            4567899999999999999999999999952   35   69999999999887542210       0013333333    


Q ss_pred             ccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcC-CCcEEEEEeHHHHHH
Q 014342          340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDD-NDSLLDIYSRSDITA  395 (426)
Q Consensus       340 ~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~-~g~lvGiis~~DI~~  395 (426)
                              .+++.++.+++++.++++.|.+.+.+.+||+|+ +|+++|+++..||+.
T Consensus        65 --------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~  113 (114)
T cd04613          65 --------TKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS  113 (114)
T ss_pred             --------cCCCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence                    246778999999999999999999999999997 799999999999875

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.29  E-value=3.6e-11  Score=101.50  Aligned_cols=114  Identities=17%  Similarity=0.143  Sum_probs=85.0

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHH-----HhhccccCCCccccccccccc
Q 014342          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCI-----CRHFKHSSSSLPILQQPVSSI  334 (426)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l-----~~~~~~~~~~~~~~~~~v~~l  334 (426)
                      +++++.+++++.+|++.|.+.+.+.+||+++   .|   +++|+++..|+++..     .....      .....++.++
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~---~~---~~~Giv~~~dl~~~~~~~~~~~~~~------~~~~~~v~~i   69 (126)
T cd04640           2 KPIVIPADTSIDEALELMIKHGVRLLLVVDS---DD---NFIGVITAVDLLGEEPIKRIQEGGI------SRSELTVADV   69 (126)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCcEEEEEcC---CC---cEEEEEEHHHHhhChhhHHHHHcCC------CchheEHHHh
Confidence            3578899999999999999999999999952   35   699999999998632     11100      1123345555


Q ss_pred             cccccccccCCCCCCCeEEE----cCCCCHHHHHHHHHhcCCcEeeEEcCC-CcEEEEEeHHHHHH
Q 014342          335 QLGTWVPRIGEANGRPFAML----RPTASLGSALALLVQADVSSIPIVDDN-DSLLDIYSRSDITA  395 (426)
Q Consensus       335 ~i~~~~~~~~~~~~~~v~tv----~~~~~l~~a~~~m~~~~i~~lPVVd~~-g~lvGiis~~DI~~  395 (426)
                      |...+          ..+.+    .+++++.+|+++|.+++++.+||+|++ |+++|+||++||++
T Consensus        70 m~~~~----------~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~  125 (126)
T cd04640          70 MTPKE----------DLKALDLEELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR  125 (126)
T ss_pred             cCchh----------hhccccHHHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence            42111          11223    368899999999999999999999987 89999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=99.29  E-value=8e-11  Score=119.44  Aligned_cols=161  Identities=16%  Similarity=0.186  Sum_probs=121.2

Q ss_pred             hccccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcc
Q 014342          152 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELET  231 (426)
Q Consensus       152 l~~~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~  231 (426)
                      |++.++.|+|..-.++++++.+.|+.++++.+.+++.+++||++++.++++|+++.+|++..+.   .  .        .
T Consensus       188 l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~---~--~--------~  254 (408)
T TIGR03520       188 FGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLN---K--K--------N  254 (408)
T ss_pred             cCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhc---c--C--------C
Confidence            5588999999998899999999999999999999999999999976679999999999874321   0  0        0


Q ss_pred             cchhhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342          232 HTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (426)
Q Consensus       232 ~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~  311 (426)
                      ..+..+                   + +++.++.+++++.++++.|.+++.|..+|+|   +.|   .++|+||..||++
T Consensus       255 ~~l~~~-------------------~-~~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvD---E~G---~~~GiVT~eDile  308 (408)
T TIGR03520       255 FDWQSL-------------------L-REPYFVPENKKLDDLLRDFQEKKNHLAIVVD---EYG---GTSGLVTLEDIIE  308 (408)
T ss_pred             CCHHHH-------------------c-CCCeEeCCCCcHHHHHHHHHhcCceEEEEEc---CCC---CEEEEEEHHHHHH
Confidence            011111                   2 4567899999999999999999999999995   335   5999999999999


Q ss_pred             HHHhhccccCCCccccccccccccccccccccCCCCCCCeEEEcCCCCHHHHHHHH
Q 014342          312 CICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALL  367 (426)
Q Consensus       312 ~l~~~~~~~~~~~~~~~~~v~~l~i~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m  367 (426)
                      .+.........   .-...+..+.             .....+....++.++.+.|
T Consensus       309 eivgei~de~d---~~~~~i~~~~-------------~~~~~v~G~~~l~~l~~~l  348 (408)
T TIGR03520       309 EIVGDISDEFD---DEDLIYSKID-------------DNNYVFEGKTSLKDFYKIL  348 (408)
T ss_pred             HHhCCCCCcCC---cCccceEEeC-------------CCeEEEEeccCHHHHHHHh
Confidence            98644321100   0011122221             1334678889999998888

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>cd02858 Esterase_N_term Esterase N-terminal domain

Probab=99.29  E-value=1.7e-11  Score=96.59  Aligned_cols=75  Identities=27%  Similarity=0.387  Sum_probs=61.3

Q ss_pred             EEEEEe-cCCCceEEEEeccCCCCCCCCCCCCCCCCCeEEEEE-ecCCceEEEEEEEcCeeecCCCCCeeeCCCCCeeeE
Q 014342           22 PVRFIW-PNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIIC-RLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCV   99 (426)
Q Consensus        22 ~v~f~~-~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~-~L~~g~y~ykFiVDg~w~~d~~~p~~~d~~G~~nn~   99 (426)
                      .++|+. ...|++|.|.|+|++|.. .+|.+.+  +|.|++++ .|++|.|+|+|+|||.|+.||.++...-..+...|.
T Consensus         7 ~v~F~vwAP~A~~V~L~~~~~~~~~-~~m~~~~--~G~W~~~v~~l~~g~Y~Y~~~vdg~~~~DP~s~~~~~~~~~~~~~   83 (85)
T cd02858           7 TVTFRLFAPKANEVQVRGSWGGAGS-HPMTKDE--AGVWSVTTGPLAPGIYTYSFLVDGVRVIDPSNPTTKPGRQVDTSG   83 (85)
T ss_pred             cEEEEEECCCCCEEEEEeecCCCcc-EeCeECC--CeEEEEEECCCCCcEEEEEEEECCeEecCCCCCceeeccccccee
Confidence            478884 556899999999998875 7898875  79999998 488899999999999999999999766444444333

Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.28  E-value=7.3e-11  Score=99.06  Aligned_cols=120  Identities=14%  Similarity=0.191  Sum_probs=87.8

Q ss_pred             cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhc
Q 014342          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (426)
Q Consensus       166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~  245 (426)
                      .+.+++.+.++.+|++.|.++++.++||+|+++++++|+++..|++..+........ .  .+.      ..+. .... 
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~-~--~~~------~~~~-~~~~-   70 (123)
T cd04627           2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFP-G--LDP------LYPI-PLRD-   70 (123)
T ss_pred             CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhcc-c--hhh------hhhh-hhhh-
Confidence            457789999999999999999999999999644789999999999876542211100 0  000      0000 0000 


Q ss_pred             cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHH
Q 014342          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDIL  310 (426)
Q Consensus       246 ~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil  310 (426)
                              ...|..++.++.+++++.+|++.|.+++++++||+++   .+   +++|+||.+|+.
T Consensus        71 --------~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~~---~~vGiit~~di~  121 (123)
T cd04627          71 --------LTIGTSDVISINGDQPLIDALHLMHNEGISSVAVVDN---QG---NLIGNISVTDVR  121 (123)
T ss_pred             --------cccCcCCceEeCCCCCHHHHHHHHHHcCCceEEEECC---CC---cEEEEEeHHHhh
Confidence                    0024577889999999999999999999999999952   35   699999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.28  E-value=4.3e-11  Score=122.97  Aligned_cols=113  Identities=16%  Similarity=0.201  Sum_probs=95.2

Q ss_pred             CCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccccc
Q 014342          257 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL  336 (426)
Q Consensus       257 ~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i  336 (426)
                      |..+++++.+++++.+|++.|.+++++++||+|   +++   +++|+||.+|+...     ..        ..++.++| 
T Consensus        95 Mi~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD---~~g---klvGIVT~rDL~~~-----~~--------~~~V~diM-  154 (479)
T PRK07807         95 VFDTPVTLSPDDTVGDALALLPKRAHGAVVVVD---EEG---RPVGVVTEADCAGV-----DR--------FTQVRDVM-  154 (479)
T ss_pred             cccCCeEECCCCCHHHHHHHHHhcCCceEEEEC---CCC---eEEEEEeHHHHhcC-----cc--------CCCHHHhc-
Confidence            577889999999999999999999999999995   245   79999999998421     10        13355554 


Q ss_pred             cccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHhcc
Q 014342          337 GTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDK  400 (426)
Q Consensus       337 ~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~~~  400 (426)
                                 .++++++++++++.+|+++|.++++..+||||++|+++|+||++||++.....
T Consensus       155 -----------t~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~~~  207 (479)
T PRK07807        155 -----------STDLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATIYT  207 (479)
T ss_pred             -----------cCCceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCC
Confidence                       25788999999999999999999999999999989999999999999866543

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.27  E-value=5.3e-11  Score=97.22  Aligned_cols=108  Identities=20%  Similarity=0.412  Sum_probs=85.4

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccccccc
Q 014342          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (426)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  339 (426)
                      ++.++.+++++.+|+..|.+++++++||++   + +   +++|+++..|+++.+......       ...++.+++    
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~---~-~---~~~G~v~~~dl~~~~~~~~~~-------~~~~~~~~~----   63 (110)
T cd04609           2 DVVSVAPDDTVSQAIERMREYGVSQLPVVD---D-G---RVVGSIDESDLLDALIEGKAK-------FSLPVREVM----   63 (110)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCceeeEee---C-C---eeEEEEeHHHHHHHHhccccc-------cCcCHHHHh----
Confidence            457889999999999999999999999995   2 5   699999999999876533211       112233332    


Q ss_pred             ccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342          340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (426)
Q Consensus       340 ~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~  395 (426)
                              .+++.++.+++++.+|+++|.+ . ..+|||+++|+++|+||++||++
T Consensus        64 --------~~~~~~v~~~~~l~~~~~~~~~-~-~~~~vv~~~~~~~Gvvt~~di~~  109 (110)
T cd04609          64 --------GEPLPTVDPDAPIEELSELLDR-G-NVAVVVDEGGKFVGIITRADLLK  109 (110)
T ss_pred             --------cCCCceeCCCCcHHHHHHHHHh-C-CceeEEecCCeEEEEEeHHHhhc
Confidence                    2467789999999999999988 3 34899998899999999999985

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.27  E-value=6e-11  Score=100.21  Aligned_cols=118  Identities=18%  Similarity=0.352  Sum_probs=88.8

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccC--C----Ccccccccccc
Q 014342          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSS--S----SLPILQQPVSS  333 (426)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~--~----~~~~~~~~v~~  333 (426)
                      +++++.+++++.+|++.|.+.+++.+||+++   ++   +++|++|..|+++++........  .    .......++.+
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~---~~---~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (128)
T cd04632           2 DVITVREDDSVGKAINVLREHGISRLPVVDD---NG---KLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYD   75 (128)
T ss_pred             CceEeCCCCCHHHHHHHHHHcCCCEEEEECC---CC---cEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHH
Confidence            3567899999999999999999999999952   35   69999999999876543210000  0    00011222333


Q ss_pred             ccccccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEc--CCCcEEEEEeHHHHHH
Q 014342          334 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVD--DNDSLLDIYSRSDITA  395 (426)
Q Consensus       334 l~i~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd--~~g~lvGiis~~DI~~  395 (426)
                      ++            .++++++.+++++.+|++.|.+.++..+||++  ++|+++|+||++||++
T Consensus        76 ~~------------~~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~  127 (128)
T cd04632          76 AM------------SSPVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR  127 (128)
T ss_pred             Hh------------cCCCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence            32            25788999999999999999999999999994  4699999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.26  E-value=1.2e-10  Score=95.76  Aligned_cols=110  Identities=21%  Similarity=0.397  Sum_probs=87.6

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccccccc
Q 014342          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (426)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  339 (426)
                      ++.++.+++++.++++.|.+.+.+.+||+++    +   +++|+++..|+++.+......      ....++.+++    
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----~---~~~G~v~~~dl~~~~~~~~~~------~~~~~~~~~~----   64 (112)
T cd04802           2 NVITVDPDTTVYEAANIMTENNIGRLIVVDN----E---KPVGIITERDLVKKVVSRNLK------PREVPVGEVM----   64 (112)
T ss_pred             CcEEECCCCCHHHHHHHHHHCCCCEEEEEEC----C---EEEEEEEHHHHHHHHhhccCC------cccCCHHHhc----
Confidence            4577899999999999999999999999952    3   599999999999876432110      0122333333    


Q ss_pred             ccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342          340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (426)
Q Consensus       340 ~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~  395 (426)
                              .+++.++.+++++.+++++|.+++...+||+|++ +++|+|++.||++
T Consensus        65 --------~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-~~~Gvi~~~di~~  111 (112)
T cd04802          65 --------STPLITIDPNASLNEAAKLMAKHGIKRLPVVDDD-ELVGIVTTTDIVM  111 (112)
T ss_pred             --------CCCcEEECCCCCHHHHHHHHHHcCCCeeEEeeCC-EEEEEEEhhhhhc
Confidence                    1467789999999999999999999999999865 9999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=99.26  E-value=5.5e-11  Score=117.45  Aligned_cols=124  Identities=12%  Similarity=0.187  Sum_probs=97.0

Q ss_pred             ccccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhccc
Q 014342          153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETH  232 (426)
Q Consensus       153 ~~~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~  232 (426)
                      ...++.|+|.....+++++++.|+.+|++.|.++++..+||+|+ +++++|+||..|+...+....         .+...
T Consensus       200 ~~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~-~g~lvGivt~~Dl~~~~~~~~---------~~~~~  269 (326)
T PRK10892        200 LLLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDD-NMKIEGIFTDGDLRRVFDMGI---------DLRQA  269 (326)
T ss_pred             ccCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcC-CCcEEEEEecHHHHHHHhcCC---------CcccC
Confidence            34567888986557889999999999999999999888888885 579999999999876432100         00011


Q ss_pred             chhhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHH
Q 014342          233 TISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (426)
Q Consensus       233 ~i~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~  312 (426)
                      ++.       .            .|+++++++.+++++.+|++.|.+++++++||++    ++   +++|+||++||++.
T Consensus       270 ~v~-------~------------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~----~~---~lvGiit~~dil~~  323 (326)
T PRK10892        270 SIA-------D------------VMTPGGIRVRPGILAVDALNLMQSRHITSVLVAD----GD---HLLGVLHMHDLLRA  323 (326)
T ss_pred             CHH-------H------------hcCCCCEEECCCCCHHHHHHHHHHCCCcEEEEee----CC---EEEEEEEhHHhHhc
Confidence            111       1            2467889999999999999999999999999994    35   79999999999874

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.26  E-value=2e-10  Score=94.87  Aligned_cols=112  Identities=18%  Similarity=0.311  Sum_probs=87.6

Q ss_pred             cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhc
Q 014342          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (426)
Q Consensus       166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~  245 (426)
                      .+.++.++.++.+|++.|.++++..+||.|.+.++++|++|..|+...+......        ....++..+        
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~~--------~~~~~v~~~--------   65 (114)
T cd04630           2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGRD--------PDRVNVYEI--------   65 (114)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCCC--------CCccCHHHH--------
Confidence            4678899999999999999999999999985437999999999987755321100        000111111        


Q ss_pred             cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (426)
Q Consensus       246 ~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~  311 (426)
                                 |..+++++.+++++.+|++.|.+.+.+.+||++   + |   +++|+||..|+++
T Consensus        66 -----------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd---~-~---~~~Gvi~~~dl~~  113 (114)
T cd04630          66 -----------MTKPLISVSPDMDIKYCARLMERTNIRRAPVVE---N-N---ELIGIISLTDIFL  113 (114)
T ss_pred             -----------hcCCCeeECCCCCHHHHHHHHHHcCCCEeeEee---C-C---EEEEEEEHHHhhc
Confidence                       245678999999999999999999999999995   2 5   7999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=99.24  E-value=1.7e-10  Score=93.87  Aligned_cols=105  Identities=21%  Similarity=0.439  Sum_probs=86.3

Q ss_pred             CCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccccccc
Q 014342          259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  338 (426)
Q Consensus       259 ~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~  338 (426)
                      ++++++.++.++.++++.|.+.+.+.+||++   + +   +++|+++..|+++.     .        ...++.+++   
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d---~-~---~~~g~v~~~~l~~~-----~--------~~~~~~~~~---   58 (107)
T cd04610           2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVD---N-G---KVVGIVSARDLLGK-----D--------PDETVEEIM---   58 (107)
T ss_pred             CCcEEECCCCcHHHHHHHHHHcCCCeeeEeE---C-C---EEEEEEEHHHhhcc-----C--------ccccHHHhC---
Confidence            3567889999999999999888888999995   2 5   79999999998752     0        012333333   


Q ss_pred             cccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342          339 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (426)
Q Consensus       339 ~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~  395 (426)
                               .+++.++.+++++.+|+++|.+++...+||+|++|+++|+|+..||++
T Consensus        59 ---------~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~  106 (107)
T cd04610          59 ---------SKDLVVAVPEMDIMDAARVMFRTGISKLPVVDENNNLVGIITNTDVIR  106 (107)
T ss_pred             ---------CCCCeEECCCCCHHHHHHHHHHhCCCeEeEECCCCeEEEEEEHHHhhc
Confidence                     135678999999999999999999999999999999999999999874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=99.22  E-value=1.1e-10  Score=113.09  Aligned_cols=121  Identities=12%  Similarity=0.140  Sum_probs=96.6

Q ss_pred             CCC--CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccc
Q 014342          257 CPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSI  334 (426)
Q Consensus       257 ~~~--~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l  334 (426)
                      |++  .++++.+++++.++++.+.+.+.+++||+++  ..+   +++|+++.+|++..+.....         ..++.++
T Consensus        73 Mtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~--~~d---~iiGiv~~kDll~~~~~~~~---------~~~l~~l  138 (292)
T PRK15094         73 MIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISE--DKD---HIEGILMAKDLLPFMRSDAE---------AFSMDKV  138 (292)
T ss_pred             ccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecC--CCC---cEEEEEEHHHHHhHhhccCC---------cCCHHHH
Confidence            454  6899999999999999999999999999953  224   69999999999975532100         1123333


Q ss_pred             cccccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHhcccccc
Q 014342          335 QLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQ  404 (426)
Q Consensus       335 ~i~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~~~~~~~  404 (426)
                      +             ++++++.+++++.+|++.|.+++.+.+||||+.|.++|+||..||+..+....+..
T Consensus       139 ~-------------r~~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~viGiVTleDIle~ivGei~de  195 (292)
T PRK15094        139 L-------------RQAVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIVGEIEDE  195 (292)
T ss_pred             c-------------CCCcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCCEEEEeEHHHHHHHHhCCCccc
Confidence            2             35568999999999999999999999999999999999999999999777654433

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.22  E-value=1.9e-10  Score=93.31  Aligned_cols=102  Identities=19%  Similarity=0.385  Sum_probs=84.5

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccccccc
Q 014342          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (426)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  339 (426)
                      ++.++.+++++.++++.|.+++.+.+||++   + +   +++|+++..++++..    .         ..++.+++    
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d---~-~---~~~Giv~~~~l~~~~----~---------~~~~~~~~----   57 (105)
T cd04599           2 DPITIDPLDSVGRAARLMEKHRIGGLPVVE---D-G---KLVGIITSRDVRRAH----P---------NRLVADAM----   57 (105)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEEE---C-C---EEEEEEehHHhhccc----c---------cCCHHHHc----
Confidence            456789999999999999989999999994   2 5   699999999997631    0         12233333    


Q ss_pred             ccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHH
Q 014342          340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT  394 (426)
Q Consensus       340 ~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~  394 (426)
                              .+++.++.+++++.+|+++|.+++.+.+||+|+ |+++|+||..||+
T Consensus        58 --------~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~~l~  103 (105)
T cd04599          58 --------TREVVTISPEASLLEAKRLMEEKKIERLPVLRE-RKLVGIITKGTIA  103 (105)
T ss_pred             --------cCCCEEECCCCCHHHHHHHHHHcCCCEeeEEEC-CEEEEEEEHHHhc
Confidence                    146778999999999999999999999999997 9999999999987

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.22  E-value=1.9e-10  Score=92.61  Aligned_cols=94  Identities=23%  Similarity=0.410  Sum_probs=80.6

Q ss_pred             cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhc
Q 014342          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (426)
Q Consensus       166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~  245 (426)
                      .+++++++.++.+|++.|.++++..+||+|+ .++++|++|..|+...                                
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~-~~~~~Giv~~~dl~~~--------------------------------   48 (96)
T cd04614           2 NVPTVWEETPLPVAVRIMELANVKALPVLDD-DGKLSGIITERDLIAK--------------------------------   48 (96)
T ss_pred             CccEeCCCCcHHHHHHHHHHcCCCeEEEECC-CCCEEEEEEHHHHhcC--------------------------------
Confidence            4678899999999999999999999999985 4799999999996521                                


Q ss_pred             cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (426)
Q Consensus       246 ~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~  311 (426)
                                   ..+.++.+++++.+|++.|.+++.+++||+++   .|   +++|++|++|+++
T Consensus        49 -------------~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~---~~---~~~Giit~~di~~   95 (96)
T cd04614          49 -------------SEVVTATKRTTVSECAQKMKRNRIEQIPIING---ND---KLIGLLRDHDLLK   95 (96)
T ss_pred             -------------CCcEEecCCCCHHHHHHHHHHhCCCeeeEECC---CC---cEEEEEEHHHhhc
Confidence                         01467899999999999999999999999952   35   6999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.21  E-value=1.5e-10  Score=94.67  Aligned_cols=106  Identities=21%  Similarity=0.335  Sum_probs=84.2

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccccccc
Q 014342          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (426)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  339 (426)
                      ++.++.+++++.++++.|.+++..++||+++   .|   +++|+++..+++....            ...++.+++.   
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~~l~~~~~------------~~~~v~~~~~---   61 (110)
T cd04601           3 DPITVSPDATVAEALELMAEYGISGLPVVDD---DG---KLVGIVTNRDLRFETD------------LDKPVSEVMT---   61 (110)
T ss_pred             CCeEeCCCCcHHHHHHHHHHcCCceEEEEcC---CC---EEEEEEEhhHeeeccc------------CCCCHHHhcc---
Confidence            4577899999999999999999999999952   35   7999999999864210            1223333331   


Q ss_pred             ccccCCCCCCCeEEEcC-CCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342          340 VPRIGEANGRPFAMLRP-TASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (426)
Q Consensus       340 ~~~~~~~~~~~v~tv~~-~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~  395 (426)
                               +++..+.+ ++++.+|+++|.+.+.+.+||+|++|+++|+||++|+++
T Consensus        62 ---------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~  109 (110)
T cd04601          62 ---------PENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEGKLKGLITVKDIEK  109 (110)
T ss_pred             ---------cCceEEecCCCCHHHHHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence                     23445566 999999999999999999999998899999999999875

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=99.21  E-value=1.8e-10  Score=118.20  Aligned_cols=112  Identities=18%  Similarity=0.190  Sum_probs=93.5

Q ss_pred             CCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccccc
Q 014342          257 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL  336 (426)
Q Consensus       257 ~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i  336 (426)
                      |.++++++.+++++.++++.|.+++++.+||++    ++   +++|+||.+|+...     .        ...++.++| 
T Consensus        94 m~~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD----~g---klvGIVT~rDL~~~-----~--------~~~~V~dIM-  152 (475)
T TIGR01303        94 VLDTPITLAPHDTVSDAMALIHKRAHGAAVVIL----ED---RPVGLVTDSDLLGV-----D--------RFTQVRDIM-  152 (475)
T ss_pred             cccCCeEECCCCCHHHHHHHHHhcCCeEEEEEE----CC---EEEEEEEHHHhhcC-----C--------CCCCHHHHc-
Confidence            467789999999999999999999999999985    24   69999999998421     1        013455554 


Q ss_pred             cccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHhcc
Q 014342          337 GTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDK  400 (426)
Q Consensus       337 ~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~~~  400 (426)
                                 .++++++.+++++.+|+++|.+++++.+||||++|+++|+||++||++.....
T Consensus       153 -----------t~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~~~  205 (475)
T TIGR01303       153 -----------STDLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATIYT  205 (475)
T ss_pred             -----------cCCceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhCC
Confidence                       25788999999999999999999999999999999999999999999865543

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=99.21  E-value=1.1e-10  Score=120.68  Aligned_cols=116  Identities=22%  Similarity=0.213  Sum_probs=94.1

Q ss_pred             CCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccccc
Q 014342          257 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL  336 (426)
Q Consensus       257 ~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i  336 (426)
                      +..+++++.|++++.+|+++|.+++++.+||++++..++   +++|++|.+|+...     .       ....+|.++|.
T Consensus       102 ~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~g---kLvGIVt~~DL~~~-----~-------~~~~~V~diMt  166 (495)
T PTZ00314        102 FIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGG---KLLGIVTSRDIDFV-----K-------DKSTPVSEVMT  166 (495)
T ss_pred             cccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCC---eEEEEEEHHHHhhc-----c-------cCCCCHHHhhC
Confidence            356778999999999999999999999999996422235   79999999998621     1       01344555552


Q ss_pred             cccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHH
Q 014342          337 GTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA  397 (426)
Q Consensus       337 ~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~  397 (426)
                        .        ..+++++.+++++.+|+++|.++++..+||||++++++|+||++||++..
T Consensus       167 --~--------~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~  217 (495)
T PTZ00314        167 --P--------REKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNR  217 (495)
T ss_pred             --C--------cCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhcc
Confidence              0        02688999999999999999999999999999999999999999998753

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=99.21  E-value=2.5e-10  Score=92.92  Aligned_cols=100  Identities=19%  Similarity=0.315  Sum_probs=83.1

Q ss_pred             eEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccccccccc
Q 014342          262 VQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVP  341 (426)
Q Consensus       262 v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~~  341 (426)
                      +++.++.++.++++.|.+.+.+++||++   + +   +++|+++..++++...              .++.+++.     
T Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d---~-~---~~~G~v~~~~l~~~~~--------------~~~~~~~~-----   57 (104)
T cd04594           4 IKVKDYDKVYEAKRIMIENDLLSLPVVD---Y-N---KFLGAVYLKDIENATY--------------GDVVDYIV-----   57 (104)
T ss_pred             eEECCCCCHHHHHHHHHHcCCcEEEEEE---C-C---EEEEEEEHHHHhhhcc--------------cchhhhhh-----
Confidence            4688999999999999999999999995   2 5   7999999999876311              12223321     


Q ss_pred             ccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342          342 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (426)
Q Consensus       342 ~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~  395 (426)
                             .+..++.+++++.+|++.|.+++.+.+||+| +|+++|+||.+||++
T Consensus        58 -------~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~-~~~~iGvit~~dl~~  103 (104)
T cd04594          58 -------RGIPYVRLTSTAEEAWEVMMKNKTRWCPVVD-DGKFKGIVTLDSILD  103 (104)
T ss_pred             -------cCCcEEcCCCCHHHHHHHHHHcCcceEEEEE-CCEEEEEEEHHHhhc
Confidence                   3567899999999999999999999999998 599999999999874

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=99.20  E-value=1.5e-09  Score=112.74  Aligned_cols=172  Identities=17%  Similarity=0.262  Sum_probs=119.9

Q ss_pred             cccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhh
Q 014342          158 YELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAW  237 (426)
Q Consensus       158 ~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~  237 (426)
                      .++|-  .++++++++.++.+|+++|.++++..+||+|+ .++++|+||..|+....    .    .      ...+.++
T Consensus        90 ~dim~--~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~-~g~lvGiVt~~DL~~~~----~----~------~~~V~di  152 (486)
T PRK05567         90 ESGVV--TDPVTVTPDTTLAEALALMARYGISGVPVVDE-NGKLVGIITNRDVRFET----D----L------SQPVSEV  152 (486)
T ss_pred             hhccc--CCCeEeCCCCCHHHHHHHHHHhCCCEEEEEcc-CCEEEEEEEHHHhhhcc----c----C------CCcHHHH
Confidence            34554  37888999999999999999999999999995 57999999999974210    0    0      0011111


Q ss_pred             HHHHHhhccccccCCCCCCCC-CCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhh
Q 014342          238 KVGKLQLNLKRQMDGNGRPCP-RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRH  316 (426)
Q Consensus       238 ~~~~~~~~~~~~~~g~~~~~~-~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~  316 (426)
                                         |. ++++++.+++++.++++.|.+++++.+||+|   +.+   +++|+||.+||++.+...
T Consensus       153 -------------------m~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVD---e~g---~lvGiIT~~DLl~~~~~p  207 (486)
T PRK05567        153 -------------------MTKERLVTVPEGTTLEEALELLHEHRIEKLPVVD---DNG---RLKGLITVKDIEKAEEFP  207 (486)
T ss_pred             -------------------cCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEc---CCC---cEEEEEEhHHhhhhhhCC
Confidence                               24 6788999999999999999999999999995   345   699999999999875311


Q ss_pred             ccccCCCccccccccccccccccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcC-CCcEEEEEeHHHHH
Q 014342          317 FKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDD-NDSLLDIYSRSDIT  394 (426)
Q Consensus       317 ~~~~~~~~~~~~~~v~~l~i~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~-~g~lvGiis~~DI~  394 (426)
                        ...      ...-..+.++.            .+...+  .-.++++.|.+.++..+ |+|. +|+..|+++..+.+
T Consensus       208 --~a~------~d~~g~l~V~a------------ai~~~~--~~~e~a~~L~~agvdvi-vvD~a~g~~~~vl~~i~~i  263 (486)
T PRK05567        208 --NAC------KDEQGRLRVGA------------AVGVGA--DNEERAEALVEAGVDVL-VVDTAHGHSEGVLDRVREI  263 (486)
T ss_pred             --Ccc------cccCCCEEEEe------------ecccCc--chHHHHHHHHHhCCCEE-EEECCCCcchhHHHHHHHH
Confidence              000      00111122222            122233  23788888999999965 6664 57777766554443

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=99.20  E-value=7.8e-11  Score=121.15  Aligned_cols=180  Identities=15%  Similarity=0.230  Sum_probs=134.3

Q ss_pred             HHHHHHHhc--cccccccCCCCCcEEEEcCCccHHHHHHHHHH-----CCCCeeeeeeCCCCcEEEEeehHHHHHHHHHh
Q 014342          145 RDRISSFLS--THTVYELLPDSGKVTALDVNLAVKQAFHVLYE-----QGLPMVPLWDDFKGRFVGVLSALDFILILREL  217 (426)
Q Consensus       145 ~~~~~~~l~--~~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~-----~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~  217 (426)
                      ++.++..+.  +.++.++|..  .+++++.+.|+.+|++.|.+     +++..+||+|+ .++++|+++.+|++..    
T Consensus       119 r~~i~~ll~~~e~tvg~iMt~--~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~-~~~l~GvV~l~dLl~a----  191 (449)
T TIGR00400       119 RKAINLLLSYSDDSAGRIMTI--EYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNE-SKHLKGVLSIRDLILA----  191 (449)
T ss_pred             HHHHHHHhCCCcchHHHhCcC--ceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECC-CCeEEEEEEHHHHhcC----
Confidence            444555544  7889999974  78999999999999999986     56778899985 4799999999997521    


Q ss_pred             ccCCCCCChhhhcccchhhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCc
Q 014342          218 GTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSC  297 (426)
Q Consensus       218 ~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~  297 (426)
                       . .     +    ..++.+                   |.++++++.+++++.+|++.|.++++..+||+|   +.|  
T Consensus       192 -~-~-----~----~~v~~i-------------------m~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD---~~g--  236 (449)
T TIGR00400       192 -K-P-----E----EILSSI-------------------MRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVD---NEG--  236 (449)
T ss_pred             -C-C-----C----CcHHHH-------------------hCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEc---CCC--
Confidence             0 0     0    011221                   356678899999999999999999999999995   245  


Q ss_pred             ceEEEEecHHhHHHHHHhhccccCCCccccccccccccccccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeE
Q 014342          298 QEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPI  377 (426)
Q Consensus       298 ~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPV  377 (426)
                       +++|+||.+|+++.+.+...             ++++.            ...++..+++++.+++..|.++++..++|
T Consensus       237 -~lvGiIt~~Dil~~l~~~~~-------------ed~~~------------~~gv~~~~~~~l~~~~~~~~~~R~~wL~v  290 (449)
T TIGR00400       237 -RLVGIVTVDDIIDVIQSEAT-------------EDFYM------------IAAVKPLDDSYFDTSILVMAKNRIIWLLV  290 (449)
T ss_pred             -eEEEEEEHHHHHHHHHhhhH-------------HHHHH------------hcCCCCCcchhhhchHHHHHHhccchHHH
Confidence             69999999999998875422             11221            12223345778899999999999999998


Q ss_pred             EcCCCcEEEEEeHHHHHHHH
Q 014342          378 VDDNDSLLDIYSRSDITALA  397 (426)
Q Consensus       378 Vd~~g~lvGiis~~DI~~~~  397 (426)
                      .    .+.|+++ ..++..+
T Consensus       291 ~----~~~~~~t-~~ii~~f  305 (449)
T TIGR00400       291 L----LVSSTFT-ATIISNY  305 (449)
T ss_pred             H----HHHHHHH-HHHHHHH
Confidence            6    5778887 6666643

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.19  E-value=4.8e-10  Score=91.01  Aligned_cols=111  Identities=23%  Similarity=0.446  Sum_probs=89.0

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccccccc
Q 014342          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (426)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  339 (426)
                      ++.++.+++++.++++.|.+++.+++||+++   ++   +++|+++..++++.+........       ..+.+++    
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~---~~~G~v~~~~l~~~~~~~~~~~~-------~~~~~~~----   64 (113)
T cd02205           2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDD---DG---RLVGIVTERDLLRALAEGGLDPL-------VTVGDVM----   64 (113)
T ss_pred             CceEecCCCCHHHHHHHHHhcCCceEEEECC---CC---CEEEEEeHHHHHHHHHhccCCcc-------ccHHHHh----
Confidence            3567889999999999999999999999953   24   69999999999987764322100       0012222    


Q ss_pred             ccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342          340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (426)
Q Consensus       340 ~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~  395 (426)
                              ..++.++.+++++.+|++.|.+.+.+.+||+|++|+++|+++..|+++
T Consensus        65 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~  112 (113)
T cd02205          65 --------TRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDILR  112 (113)
T ss_pred             --------cCCceecCCCcCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHhhc
Confidence                    246778999999999999999999999999999999999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=99.19  E-value=1.7e-10  Score=122.38  Aligned_cols=118  Identities=16%  Similarity=0.274  Sum_probs=95.2

Q ss_pred             CCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccccc
Q 014342          257 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL  336 (426)
Q Consensus       257 ~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i  336 (426)
                      |.+++.++++++++.++.+.|.+++.+.+||+|+   ++   +++|+++.+|+.+.+.....       ....++.+++ 
T Consensus       453 m~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~---~g---~lvGiVt~~dL~~~l~~~~~-------~~~~~v~dim-  518 (574)
T PRK01862        453 IQPAQTVVPPTASVADMTRVFLEYPVKYLYVVDD---DG---RFRGAVALKDITSDLLDKRD-------TTDKTAADYA-  518 (574)
T ss_pred             hcCCCceeCCCCCHHHHHHHHHhCCCceEEEEcC---CC---eEEEEEEHHHHHHHhhcccc-------cccchHHHhc-
Confidence            5677788999999999999999999999999962   35   79999999999886542211       0122344443 


Q ss_pred             cccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCC--CcEEEEEeHHHHHHHHhc
Q 014342          337 GTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN--DSLLDIYSRSDITALAKD  399 (426)
Q Consensus       337 ~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~--g~lvGiis~~DI~~~~~~  399 (426)
                                 .+++.++++++++.+|+++|.+++++.+||||++  ++++|+||++||++.+.+
T Consensus       519 -----------~~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~~  572 (574)
T PRK01862        519 -----------HTPFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYRR  572 (574)
T ss_pred             -----------cCCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHHh
Confidence                       2467789999999999999999999999999976  589999999999987543

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=99.19  E-value=1.7e-10  Score=118.46  Aligned_cols=116  Identities=19%  Similarity=0.298  Sum_probs=94.5

Q ss_pred             CCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccccc
Q 014342          257 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL  336 (426)
Q Consensus       257 ~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i  336 (426)
                      |.++++++.+++++.++++.|.+++++++||++++...+   +++|+||.+|++...     .       ...++.+++.
T Consensus        86 ~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~---~lvGIVt~rDL~~~~-----~-------~~~~V~dvm~  150 (450)
T TIGR01302        86 IISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTG---KLVGIITKRDIRFVK-----D-------KGKPVSEVMT  150 (450)
T ss_pred             eecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCC---eEEEEEEHHHHhhhh-----c-------CCCCHHHhhC
Confidence            456789999999999999999999999999996321114   699999999997421     0       1234444441


Q ss_pred             cccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHh
Q 014342          337 GTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  398 (426)
Q Consensus       337 ~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~  398 (426)
                      .           ++++++.+++++.+|+++|.++++..+||||++|+++|+||+.||++...
T Consensus       151 ~-----------~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~~  201 (450)
T TIGR01302       151 R-----------EEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRRK  201 (450)
T ss_pred             C-----------CCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhccc
Confidence            0           27889999999999999999999999999999999999999999998653

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.19  E-value=3.1e-10  Score=94.49  Aligned_cols=117  Identities=19%  Similarity=0.374  Sum_probs=88.3

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCC--cccccccccccccc
Q 014342          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSS--LPILQQPVSSIQLG  337 (426)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~--~~~~~~~v~~l~i~  337 (426)
                      ++.++.+++++.+|++.|.+.+..++||+|+   ++   +++|+++..++++............  ......++.+++  
T Consensus         2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~---~~---~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~--   73 (121)
T cd04584           2 DVVTITPTTTIAEALELMREHKIRHLPVVDE---EG---RLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKEIM--   73 (121)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCcccEECC---CC---cEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHHHh--
Confidence            4577899999999999999999999999952   35   6999999999987654321110000  000112233322  


Q ss_pred             ccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342          338 TWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (426)
Q Consensus       338 ~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~  395 (426)
                                ..++.++.+++++.+|+++|.+++...+||+|+ |+++|+++..||++
T Consensus        74 ----------~~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~Gvv~~~di~~  120 (121)
T cd04584          74 ----------TKDVITVHPLDTVEEAALLMREHRIGCLPVVED-GRLVGIITETDLLR  120 (121)
T ss_pred             ----------hCCCeEECCCCcHHHHHHHHHHcCCCeEEEeeC-CEEEEEEEHHHhhc
Confidence                      246778999999999999999999999999987 99999999999874

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=99.19  E-value=5.1e-10  Score=91.74  Aligned_cols=109  Identities=19%  Similarity=0.324  Sum_probs=86.4

Q ss_pred             cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhc
Q 014342          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (426)
Q Consensus       166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~  245 (426)
                      .++++..+.++.+|.+.|.++++..+||+|+++++++|++|..|+...+..-.   .    .    ..+..+        
T Consensus         2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~~---~----~----~~~~~~--------   62 (111)
T cd04590           2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGE---E----D----LDLRDL--------   62 (111)
T ss_pred             ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcCC---C----c----CCHHHH--------
Confidence            57889999999999999999999999999864379999999999887553110   0    0    011111        


Q ss_pred             cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (426)
Q Consensus       246 ~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~  311 (426)
                                 + +++.++.+++++.++++.|.+++.+.+||+++   +|   +++|++|++|+++
T Consensus        63 -----------~-~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~---~~---~~~Gvit~~di~~  110 (111)
T cd04590          63 -----------L-RPPLFVPESTPLDDLLEEMRKERSHMAIVVDE---YG---GTAGLVTLEDILE  110 (111)
T ss_pred             -----------h-cCCeecCCCCcHHHHHHHHHhcCCcEEEEEEC---CC---CEEEEeEHHHhhc
Confidence                       2 35678999999999999999999999999962   35   6999999999874

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.19  E-value=6.1e-10  Score=91.32  Aligned_cols=111  Identities=22%  Similarity=0.387  Sum_probs=87.3

Q ss_pred             cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhc
Q 014342          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (426)
Q Consensus       166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~  245 (426)
                      ++++++.+.++.+|.+.|.+++...+||+|++ ++++|+++..|++..+......        ....++..         
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~-~~~~Giv~~~~l~~~~~~~~~~--------~~~~~~~~---------   63 (113)
T cd04623           2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDG-GRLVGIFSERDIVRKVALRGAS--------ALDTPVSE---------   63 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEECCC-CCEEEEEehHHHHHHHhhcCCC--------ccccCHHH---------
Confidence            46778999999999999999999999999964 6999999999988755321100        00001111         


Q ss_pred             cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (426)
Q Consensus       246 ~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~  311 (426)
                                .|..++.++.+++++.++++.|.+.+.+.+||++   + +   +++|++|..|+++
T Consensus        64 ----------~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~---~-~---~~~Gvit~~di~~  112 (113)
T cd04623          64 ----------IMTRNVITVTPDDTVDEAMALMTERRFRHLPVVD---G-G---KLVGIVSIGDVVK  112 (113)
T ss_pred             ----------hcCCCcEEECCCCcHHHHHHHHHHcCCCEeEEEe---C-C---EEEEEEEHHHhhc
Confidence                      1345778899999999999999999999999995   2 5   7999999999976

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.18  E-value=1.1e-09  Score=112.71  Aligned_cols=182  Identities=14%  Similarity=0.162  Sum_probs=128.8

Q ss_pred             HHHhccccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhh
Q 014342          149 SSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEE  228 (426)
Q Consensus       149 ~~~l~~~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~  228 (426)
                      .+.+...+..++|-.  .++++.++.++.+|+++|.++++.++||+|+ +++++|+||..|+...     .   .   . 
T Consensus        83 ~~~l~~VKv~~iMi~--~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~-~gklvGIVT~rDL~~~-----~---~---~-  147 (479)
T PRK07807         83 AEVVAWVKSRDLVFD--TPVTLSPDDTVGDALALLPKRAHGAVVVVDE-EGRPVGVVTEADCAGV-----D---R---F-  147 (479)
T ss_pred             HHHHhhccccccccc--CCeEECCCCCHHHHHHHHHhcCCceEEEECC-CCeEEEEEeHHHHhcC-----c---c---C-
Confidence            345556677788755  6788999999999999999999999999995 5799999999997310     0   0   0 


Q ss_pred             hcccchhhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHh
Q 014342          229 LETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSD  308 (426)
Q Consensus       229 l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~d  308 (426)
                         ..+.+                   .|+.+++++.+++++.+|+.+|.+++++.+||+|+   ++   +++|+||.+|
T Consensus       148 ---~~V~d-------------------iMt~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~---~g---~lvGIIT~~D  199 (479)
T PRK07807        148 ---TQVRD-------------------VMSTDLVTLPAGTDPREAFDLLEAARVKLAPVVDA---DG---RLVGVLTRTG  199 (479)
T ss_pred             ---CCHHH-------------------hccCCceEECCCCcHHHHHHHHHhcCCCEEEEEcC---CC---eEEEEEEHHH
Confidence               01121                   14678899999999999999999999999999952   35   7999999999


Q ss_pred             HHHHHHhhccccCCCccccccccccccccccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcC-CCcEEEE
Q 014342          309 ILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDD-NDSLLDI  387 (426)
Q Consensus       309 il~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~-~g~lvGi  387 (426)
                      |++.........       ..  ..+.++            ..+  .......+.++.|.+.+++.+ ++|- +|.   -
T Consensus       200 Il~~~~~~~~~~-------~~--g~l~V~------------aav--~~~~~~~~~a~~Lv~aGvd~i-~~D~a~~~---~  252 (479)
T PRK07807        200 ALRATIYTPAVD-------AA--GRLRVA------------AAV--GINGDVAAKARALLEAGVDVL-VVDTAHGH---Q  252 (479)
T ss_pred             HHHHhhCCchhh-------hh--hccchH------------hhh--ccChhHHHHHHHHHHhCCCEE-EEeccCCc---c
Confidence            999765321100       00  012211            122  223346788888889999886 6675 554   4


Q ss_pred             EeHHHHHHHHhcc
Q 014342          388 YSRSDITALAKDK  400 (426)
Q Consensus       388 is~~DI~~~~~~~  400 (426)
                      ...-++++.++++
T Consensus       253 ~~~~~~i~~ik~~  265 (479)
T PRK07807        253 EKMLEALRAVRAL  265 (479)
T ss_pred             HHHHHHHHHHHHH
Confidence            4555666666654

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.18  E-value=5.4e-10  Score=94.33  Aligned_cols=125  Identities=20%  Similarity=0.365  Sum_probs=88.3

Q ss_pred             cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhc-cCCCCCChhhhcccchhhhHHHHHhh
Q 014342          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELG-TNGSNLTEEELETHTISAWKVGKLQL  244 (426)
Q Consensus       166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~-~~~~~~~~~~l~~~~i~~~~~~~~~~  244 (426)
                      +++.+.++.++.+|+++|.+.++..+||+|++ ++++|++|..|+...+.... .+...........    ........ 
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-   75 (128)
T cd04632           2 DVITVREDDSVGKAINVLREHGISRLPVVDDN-GKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKER----MLDLPVYD-   75 (128)
T ss_pred             CceEeCCCCCHHHHHHHHHHcCCCEEEEECCC-CcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhh----hccCcHHH-
Confidence            45678899999999999999999999999964 79999999999887543211 0000000000000    00000011 


Q ss_pred             ccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342          245 NLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (426)
Q Consensus       245 ~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~  311 (426)
                                 .|..+++++.+++++.+++..|.+++.+.+||++++ +++   +++|+||.+||++
T Consensus        76 -----------~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~-~~~---~~~Gvit~~di~~  127 (128)
T cd04632          76 -----------AMSSPVITASPNDSVRDAVDRMLENDDSSVVVVTPD-DDT---KVVGILTKKDVLR  127 (128)
T ss_pred             -----------HhcCCCceECCCCcHHHHHHHHHhCCCCeEeEeccC-CCC---cEEEEEEhHhhhc
Confidence                       135678899999999999999999999999998521 335   6999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=99.18  E-value=3e-10  Score=95.07  Aligned_cols=122  Identities=16%  Similarity=0.269  Sum_probs=88.9

Q ss_pred             CcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhh
Q 014342          165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL  244 (426)
Q Consensus       165 ~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~  244 (426)
                      .++++++.+.++.+|.+.|.++++..+||+|++ ++++|+++..|++..+.....  ... ...+ .+.....  .... 
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-~~~~Giv~~~~l~~~~~~~~~--~~~-~~~~-~~~~~~~--~i~~-   73 (124)
T cd04600           2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDGD-RRLVGIVTQRDLLRHARPDGR--RPL-RGRL-RGRDKPE--TVGD-   73 (124)
T ss_pred             CCcEEeCCCCCHHHHHHHHHHcCCceeeEECCC-CCEEEEEEHHHHHhhhccccc--chh-hhhh-hcccccc--cHHH-
Confidence            467889999999999999999999999999864 799999999998765431110  000 0000 0000000  0011 


Q ss_pred             ccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342          245 NLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (426)
Q Consensus       245 ~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~  311 (426)
                                 .|...++++.+++++.++++.|.+++.+.+||++   +.|   +++|++|..|+++
T Consensus        74 -----------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~---~~g---~~~Gvit~~di~~  123 (124)
T cd04600          74 -----------IMSPPVVTVRPDTPIAELVPLLADGGHHHVPVVD---EDR---RLVGIVTQTDLIA  123 (124)
T ss_pred             -----------hccCCCeeeCCCCcHHHHHHHHHhcCCCceeEEc---CCC---CEEEEEEhHHhhc
Confidence                       2356788999999999999999999999999995   245   6999999999875

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.17  E-value=4.3e-10  Score=97.30  Aligned_cols=126  Identities=25%  Similarity=0.478  Sum_probs=90.8

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhcccc----CCCcccccccccccc
Q 014342          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHS----SSSLPILQQPVSSIQ  335 (426)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~----~~~~~~~~~~v~~l~  335 (426)
                      +++++.+++++.++++.|.+.+++.+||++   + +   +++|+++..|+++++.......    +........++.++.
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd---~-~---~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (143)
T cd04634           2 NPITCNADDTISDAARLLRENKISGAPVLD---G-G---KLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFI   74 (143)
T ss_pred             CcEEecCCCCHHHHHHHHHHcCCCcceEeE---C-C---eEEEEecHHHHHHHHHhccCccccccCCcceeeeccchhee
Confidence            457899999999999999999999999995   2 5   7999999999998775432100    000011111221110


Q ss_pred             cccc-----------ccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342          336 LGTW-----------VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (426)
Q Consensus       336 i~~~-----------~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~  395 (426)
                        .|           ...+.+.+..++.++.+++++.+|++.|.+++.+.+||+++ |+++|++++.|++.
T Consensus        75 --~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~~Gvvt~~dl~~  142 (143)
T cd04634          75 --NWEETKRALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVED-GRLVGIVTRGDIIE  142 (143)
T ss_pred             --ehHHHHHHHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence              00           00011223457889999999999999999999999999997 99999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=99.17  E-value=2.8e-10  Score=93.31  Aligned_cols=102  Identities=20%  Similarity=0.303  Sum_probs=81.8

Q ss_pred             eCCCCCHHHHHHHHHhCC-----CCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccccccc
Q 014342          264 AGPYDSLKEVALKILQNK-----VATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  338 (426)
Q Consensus       264 v~~~~sl~~a~~~m~~~~-----v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~  338 (426)
                      +.+++++.++++.|.+++     +..+||+++   ++   +++|+++.+++++.     .        ...++.+++   
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~---~~---~~~G~v~~~~l~~~-----~--------~~~~v~~~~---   59 (109)
T cd04606           2 VREDWTVGEALEYLRRNADDPETIYYIYVVDE---EG---RLLGVVSLRDLLLA-----D--------PDTPVSDIM---   59 (109)
T ss_pred             ccccCcHHHHHHHHHhccCcccceeEEEEECC---CC---CEEEEEEHHHHhcC-----C--------CcchHHHHh---
Confidence            578999999999998777     468999952   35   69999999998751     0        012233332   


Q ss_pred             cccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHH
Q 014342          339 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITAL  396 (426)
Q Consensus       339 ~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~  396 (426)
                               ..++.++.+++++.++++.|.+++...+||+|++|+++|+||+.||++.
T Consensus        60 ---------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~~  108 (109)
T cd04606          60 ---------DTDVISVSADDDQEEVARLFEKYDLLALPVVDEEGRLVGIITVDDVIDV  108 (109)
T ss_pred             ---------CCCCeEEcCCCCHHHHHHHHHHcCCceeeeECCCCcEEEEEEhHHhhhh
Confidence                     1467789999999999999999999999999988999999999999864

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.17  E-value=5.2e-10  Score=93.78  Aligned_cols=121  Identities=21%  Similarity=0.355  Sum_probs=88.2

Q ss_pred             cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCC--CChhhhcccchhhhHHHHHh
Q 014342          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSN--LTEEELETHTISAWKVGKLQ  243 (426)
Q Consensus       166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~--~~~~~l~~~~i~~~~~~~~~  243 (426)
                      ++++++++.++.+|++.|.+++...+||+|+++++++|+++..|+...+.........  ..........+       ..
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~   74 (125)
T cd04631           2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPV-------RS   74 (125)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhccccccccchhhhcCH-------HH
Confidence            4678899999999999999999999999996447999999999988655321100000  00000000001       11


Q ss_pred             hccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342          244 LNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (426)
Q Consensus       244 ~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~  311 (426)
                                  .+..+++++.+++++.++++.|.+.+.+.+||+++   +|   +++|+||..||++
T Consensus        75 ------------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~---~~---~~~Gvit~~di~~  124 (125)
T cd04631          75 ------------IMTRNVITITPDDSIKDAAELMLEKRVGGLPVVDD---DG---KLVGIVTERDLLK  124 (125)
T ss_pred             ------------HhcCCceEeCCCCcHHHHHHHHHHcCCceEEEEcC---CC---cEEEEEEHHHhhc
Confidence                        13456789999999999999999999999999952   35   6999999999976

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.17  E-value=3.6e-10  Score=93.88  Aligned_cols=113  Identities=14%  Similarity=0.216  Sum_probs=85.8

Q ss_pred             CceEeCCCCCHHHHHHHHHhCC-CCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccccccc
Q 014342          260 PLVQAGPYDSLKEVALKILQNK-VATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  338 (426)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~-v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~  338 (426)
                      ++.++.+++++.++++.|.+.+ .+.+||++   + |   +++|+++..++++++......    ......++.+++   
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd---~-~---~~~G~v~~~~l~~~~~~~~~~----~~~~~~~v~~~~---   67 (119)
T cd04598           2 PAPTVSPDTTVNDVLERFERDPDLSALAVVD---D-G---RPVGLIMREALMELLSTPYGR----ALYGKKPVSEVM---   67 (119)
T ss_pred             CcCccCCCCcHHHHHHHHHhCCCccEEEEEE---C-C---eeEEEEEHHHHHHHHhchhhH----HHHcCCcHHHhc---
Confidence            4567889999999999998877 89999995   2 5   799999999998765432100    000122333333   


Q ss_pred             cccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCc---EeeEEcCCCcEEEEEeHHHHHH
Q 014342          339 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVS---SIPIVDDNDSLLDIYSRSDITA  395 (426)
Q Consensus       339 ~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~---~lPVVd~~g~lvGiis~~DI~~  395 (426)
                               .+++.++.+++++.+|++.|.+++..   .+|||+++|+++|+||..|+++
T Consensus        68 ---------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~~  118 (119)
T cd04598          68 ---------DPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR  118 (119)
T ss_pred             ---------CCCcEEecCCCCHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence                     24677899999999999999988864   4578988899999999999874

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=99.16  E-value=1.1e-09  Score=113.67  Aligned_cols=113  Identities=23%  Similarity=0.351  Sum_probs=94.5

Q ss_pred             CCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccccc
Q 014342          257 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL  336 (426)
Q Consensus       257 ~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i  336 (426)
                      |..+++++.+++++.++++.|.+++++++||++   +.+   +++|+||.+|++...     .       ...++.+++.
T Consensus        93 m~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd---~~g---~lvGiVt~~DL~~~~-----~-------~~~~V~dim~  154 (486)
T PRK05567         93 VVTDPVTVTPDTTLAEALALMARYGISGVPVVD---ENG---KLVGIITNRDVRFET-----D-------LSQPVSEVMT  154 (486)
T ss_pred             ccCCCeEeCCCCCHHHHHHHHHHhCCCEEEEEc---cCC---EEEEEEEHHHhhhcc-----c-------CCCcHHHHcC
Confidence            567889999999999999999999999999995   245   799999999986421     0       1234444441


Q ss_pred             cccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHh
Q 014342          337 GTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  398 (426)
Q Consensus       337 ~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~  398 (426)
                                 .++++++.+++++.+|+++|.+++++.+||+|++|+++|+||++||++...
T Consensus       155 -----------~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~~  205 (486)
T PRK05567        155 -----------KERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAEE  205 (486)
T ss_pred             -----------CCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhhh
Confidence                       037889999999999999999999999999999999999999999998653

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.16  E-value=5.6e-10  Score=92.19  Aligned_cols=114  Identities=20%  Similarity=0.353  Sum_probs=84.4

Q ss_pred             cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhc
Q 014342          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (426)
Q Consensus       166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~  245 (426)
                      ++++++.+.++.+|++.|.++++..+||+|+ .++++|+++..|+...+.....    .....+...++.       .  
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~~Giv~~~dl~~~~~~~~~----~~~~~~~~~~v~-------~--   67 (116)
T cd04643           2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDK-EGKYVGTISLTDILWKLKGLEN----LDLERLVDLKVI-------D--   67 (116)
T ss_pred             CcEEECCCCcHHHHHHHHHHCCCceeeeECC-CCcEEEEEeHHHHHHHhhccCc----hhHHHHhCCcHH-------H--
Confidence            5788999999999999999999999999985 4789999999998765431100    000000011111       1  


Q ss_pred             cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (426)
Q Consensus       246 ~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~  311 (426)
                                .|..++.++.+++++.+|+..|.+.+  .+||++   +++   +++|++|..|+++
T Consensus        68 ----------~~~~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~---~~~---~~~Gvit~~dil~  115 (116)
T cd04643          68 ----------VMNTDVPVIIDDADIEEILHLLIDQP--FLPVVD---DDG---IFIGIITRREILK  115 (116)
T ss_pred             ----------HhcCCCceecCCCCHHHHHHHHhcCC--ceeEEe---CCC---eEEEEEEHHHhhc
Confidence                      13556788999999999999998755  599995   235   7999999999876

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.15  E-value=2.6e-10  Score=96.27  Aligned_cols=113  Identities=13%  Similarity=0.215  Sum_probs=86.1

Q ss_pred             cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhc
Q 014342          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (426)
Q Consensus       166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~  245 (426)
                      +++++.++.++.+|++.|.++++..+||+|+ +++++|++|..|++..+..-....         ..++.+         
T Consensus         3 ~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~-~~~~~Gii~~~dl~~~~~~~~~~~---------~~~v~~---------   63 (124)
T cd04608           3 APVTVLPTVTCAEAIEILKEKGFDQLPVVDE-SGKILGMVTLGNLLSSLSSGKVQP---------SDPVSK---------   63 (124)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCCEEEEEEHHHHHHHHHHhccCC---------CCcHHH---------
Confidence            4678899999999999999999999999985 478999999999887554211100         001222         


Q ss_pred             cccccCCCCCCCCCCceEeCCCCCHHHHHHHHH---------hCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHH
Q 014342          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKIL---------QNKVATVPIIHSTGPAGSCQEILYLASLSDILKCI  313 (426)
Q Consensus       246 ~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~---------~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l  313 (426)
                                .|.+++.++.+++++.+++++|.         +.+.+++||++   ++|   +++||||.+||++++
T Consensus        64 ----------im~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~---~~~---~~~Givt~~Dl~~~~  124 (124)
T cd04608          64 ----------ALYKQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKE---KQE---KPIGIVTKIDLLSYI  124 (124)
T ss_pred             ----------HhhccceecCCCCCHHHHHhhcccCCceEEEeccccccccccc---ccc---ceEEEEehhHhhhhC
Confidence                      24677889999999999998643         34678888884   335   699999999999863

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.15  E-value=6.6e-10  Score=92.71  Aligned_cols=120  Identities=18%  Similarity=0.334  Sum_probs=87.7

Q ss_pred             cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhc
Q 014342          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (426)
Q Consensus       166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~  245 (426)
                      ++++++++.++.+|++.|.+.++..+||+|. .++++|+++..|+...+.........-.........+..         
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~---------   71 (122)
T cd04803           2 PVVTLSEDDSLADAEELMREHRIRHLPVVNE-DGKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAE---------   71 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCcccccEECC-CCCEEEEEEHHHHHHHhccccccccccccccccCcCHHH---------
Confidence            5678899999999999999999999999985 479999999999876543211100000000000111111         


Q ss_pred             cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (426)
Q Consensus       246 ~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~  311 (426)
                                .+..+++++.+++++.++++.|.+.+.+.+||+++   .|   +++|++|..|+++
T Consensus        72 ----------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~---~~---~~~Gvit~~dl~~  121 (122)
T cd04803          72 ----------VMKTDVLTVTPDTPLREAAEIMVENKIGCLPVVDD---KG---TLVGIITRSDFLR  121 (122)
T ss_pred             ----------hhCCCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcC---CC---CEEEEEEHHHhhc
Confidence                      13456788999999999999999999999999952   35   6999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=99.15  E-value=8.6e-10  Score=90.87  Aligned_cols=110  Identities=22%  Similarity=0.310  Sum_probs=86.1

Q ss_pred             cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhc
Q 014342          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (426)
Q Consensus       166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~  245 (426)
                      +.++++.+.++.+|++.|.+++...+||.|+ +++++|++|..|+...+.....         . ...+..+        
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~~G~v~~~dl~~~~~~~~~---------~-~~~v~~~--------   63 (113)
T cd04607           3 KQLLVSPDASILDALRKIDKNALRIVLVVDE-NGRLLGTVTDGDIRRALLKGLS---------L-DDPVSEV--------   63 (113)
T ss_pred             cceEECCCCCHHHHHHHHHhcCcCEEEEECC-CCCEEEEEEcHHHHHHHhcCCC---------c-CCCHHHh--------
Confidence            4677899999999999999999999999985 4789999999998764431100         0 0011111        


Q ss_pred             cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (426)
Q Consensus       246 ~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~  311 (426)
                                 |..++.++.+++++.++++.|.+++.+.+||++   ++|   +++|+||.+||+.
T Consensus        64 -----------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~---~~~---~~~Gvit~~di~~  112 (113)
T cd04607          64 -----------MNRNPITAKVGSSREEILALMRERSIRHLPILD---EEG---RVVGLATLDDLLS  112 (113)
T ss_pred             -----------hcCCCEEEcCCCCHHHHHHHHHHCCCCEEEEEC---CCC---CEEEEEEhHHhcc
Confidence                       245677899999999999999999999999995   235   6999999999864

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=99.15  E-value=6.1e-10  Score=91.10  Aligned_cols=101  Identities=15%  Similarity=0.196  Sum_probs=83.7

Q ss_pred             ceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccccccccc
Q 014342          261 LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWV  340 (426)
Q Consensus       261 ~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~  340 (426)
                      ...+.+++++.++...|.+.+..++||+++...+|   +++|+++..++.+....                  ++     
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~---~~~G~v~~~dl~~~~~~------------------~m-----   57 (105)
T cd04591           4 VVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESP---RLVGYILRSQLVVALKN------------------YI-----   57 (105)
T ss_pred             eEEecccccHHHHHHHHHhCCCCCcceEcCCCCCC---EEEEEEeHHHHHHHHHH------------------hc-----
Confidence            46788999999999999998899999995210035   79999999999876532                  11     


Q ss_pred             cccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342          341 PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (426)
Q Consensus       341 ~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~  395 (426)
                             .+++.++.+++++.++++.|.+++.+.+||++ +|+++|++|+.||++
T Consensus        58 -------~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~-~~~~~Gvvt~~dl~~  104 (105)
T cd04591          58 -------DPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVD-EGRLVGIITRKDLLK  104 (105)
T ss_pred             -------cCCCceECCCCcHHHHHHHHHHcCCCEEEEEE-CCeEEEEEEhhhhhc
Confidence                   13566899999999999999999999999995 689999999999875

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=99.15  E-value=7.6e-10  Score=91.51  Aligned_cols=112  Identities=18%  Similarity=0.289  Sum_probs=86.6

Q ss_pred             EEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhcc
Q 014342          167 VTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNL  246 (426)
Q Consensus       167 vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~  246 (426)
                      +.++++++++.+|.+.|.+.+...+||+|+ .++++|+++..|+...+.....    .     ...++..          
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~~G~v~~~dl~~~~~~~~~----~-----~~~~~~~----------   62 (115)
T cd04593           3 PPVLSATTPLREAAEQLIESKHGSALVVDR-DGGVVGIITLPDLLRALEADEA----G-----EPSAVDE----------   62 (115)
T ss_pred             CcEeCCCCCHHHHHHHHHhCCCcEEEEEcC-CCCEEEEEEHHHHHHHHhcccc----c-----ccccHHH----------
Confidence            467789999999999999999999999996 4799999999998765532100    0     0000111          


Q ss_pred             ccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342          247 KRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (426)
Q Consensus       247 ~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~  311 (426)
                               .|...+.++.+++++.+++++|.+++.+.+||++++ ..|   +++|+||.+||++
T Consensus        63 ---------~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~-~~~---~~~Gvit~~di~~  114 (115)
T cd04593          63 ---------VATPPLLTVHPDEPLAHALDRMASRGLRQLPVVDRG-NPG---QVLGLLTRENVLL  114 (115)
T ss_pred             ---------hccCCceEECCCCCHHHHHHHHHHcCCceeeEEeCC-CCC---eEEEEEEhHHhhc
Confidence                     134567889999999999999999999999999632 125   6999999999875

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=99.15  E-value=3.7e-10  Score=111.30  Aligned_cols=123  Identities=17%  Similarity=0.253  Sum_probs=98.0

Q ss_pred             cccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccc
Q 014342          154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHT  233 (426)
Q Consensus       154 ~~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~  233 (426)
                      ..++.|+|.++..++++.++.|+.+|++.|.+++...+||+|+ +++++|+||..|+.+.+..-  .  ..      ...
T Consensus       196 ~~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~-~g~~iG~vt~~dl~~~~~~~--~--~~------~~~  264 (321)
T PRK11543        196 LNKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDA-QQQVQGVFTDGDLRRWLVGG--G--AL------TTP  264 (321)
T ss_pred             HhHHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcC-CCcEEEEecHHHHHHHHhCC--C--Cc------CCc
Confidence            5678888888655888999999999999999999999999995 47999999999987644310  0  00      001


Q ss_pred             hhhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHH
Q 014342          234 ISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (426)
Q Consensus       234 i~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~  312 (426)
                      +.       .            .|.++++++.+++++.+|++.|.++++.++||+|   +++   +++|+||+.|+++.
T Consensus       265 v~-------~------------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd---~~~---~lvGvIt~~di~~~  318 (321)
T PRK11543        265 VN-------E------------AMTRGGTTLQAQSRAIDAKEILMKRKITAAPVVD---ENG---KLTGAINLQDFYQA  318 (321)
T ss_pred             HH-------H------------hcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEc---CCC---eEEEEEEHHHHHhc
Confidence            11       1            1466788999999999999999999999999995   235   69999999999864

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=99.15  E-value=4.5e-10  Score=114.00  Aligned_cols=118  Identities=15%  Similarity=0.158  Sum_probs=95.8

Q ss_pred             CCCC--CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccc
Q 014342          256 PCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSS  333 (426)
Q Consensus       256 ~~~~--~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~  333 (426)
                      .|++  .++++..++++.++++.|.+++++|+||.++  ..+   +++|+++.+|++.++..  .         ..++.+
T Consensus       196 iMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~--~~d---~ivGiv~~kDll~~~~~--~---------~~~l~~  259 (408)
T TIGR03520       196 VMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKE--TID---NITGVLYIKDLLPHLNK--K---------NFDWQS  259 (408)
T ss_pred             eCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcC--CCC---ceEEEEEHHHHHhHhcc--C---------CCCHHH
Confidence            3554  6899999999999999999999999999963  223   59999999999875421  0         011222


Q ss_pred             ccccccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHhcccc
Q 014342          334 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAY  402 (426)
Q Consensus       334 l~i~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~~~~~  402 (426)
                      +     +        +++.++++++++.++++.|.+++.+..+|+||.|.++|+||..||+..+-...+
T Consensus       260 ~-----~--------~~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~~~GiVT~eDileeivgei~  315 (408)
T TIGR03520       260 L-----L--------REPYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLVTLEDIIEEIVGDIS  315 (408)
T ss_pred             H-----c--------CCCeEeCCCCcHHHHHHHHHhcCceEEEEEcCCCCEEEEEEHHHHHHHHhCCCC
Confidence            2     2        367799999999999999999999999999999999999999999997754444

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=99.14  E-value=7.7e-10  Score=90.53  Aligned_cols=108  Identities=19%  Similarity=0.410  Sum_probs=86.6

Q ss_pred             CcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhh
Q 014342          165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL  244 (426)
Q Consensus       165 ~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~  244 (426)
                      .+++++.++.++.+|++.|.+++...+||.|+ .++++|++|..|++..+....             ..+..+       
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~~G~v~~~~l~~~~~~~~-------------~~~~~~-------   60 (110)
T cd04605           2 RPVVTISEDASIKEAAKLMIEENINHLPVVDE-DGRLVGIVTSWDISKAVARDK-------------KSVEDI-------   60 (110)
T ss_pred             CCCEEECCCCCHHHHHHHHHhCCCceEEEECC-CCcEEEEEeHHHHHHHHhhCc-------------cCHHHh-------
Confidence            35678899999999999999999999999985 479999999999875443100             001111       


Q ss_pred             ccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342          245 NLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (426)
Q Consensus       245 ~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~  311 (426)
                                  |..++.++.+++++.+|++.|.+++.+.+||++   ++|   +++|++|+.|+++
T Consensus        61 ------------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~---~~~---~~~G~v~~~di~~  109 (110)
T cd04605          61 ------------MTRNVITATPDEPIDVAARKMERHNISALPVVD---AEN---RVIGIITSEDISK  109 (110)
T ss_pred             ------------cCCCCeEECCCCcHHHHHHHHHHhCCCEEeEEC---CCC---cEEEEEEHHHhhh
Confidence                        245678899999999999999999999999995   235   7999999999864

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=99.14  E-value=3.9e-10  Score=113.76  Aligned_cols=123  Identities=20%  Similarity=0.313  Sum_probs=98.8

Q ss_pred             cccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchh
Q 014342          156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTIS  235 (426)
Q Consensus       156 ~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~  235 (426)
                      .+.+++..  +.+++++.+|+.+|...|.++|+.++.+++. .+...||+|.+|+...+..-...   .           
T Consensus       150 rv~~~~~~--~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~-~~~~~GIvT~~dl~~~v~~~g~~---~-----------  212 (610)
T COG2905         150 RVGEVKTL--PAVTVSPQASIQDAARKMKDEGVSSLVVLDD-SGPLLGIVTRKDLRSRVIADGRS---K-----------  212 (610)
T ss_pred             HHHHHhcC--CCcccCccCcHHHHHHHHHhcCCCeEEEEcC-CCCccceeehHHHHHHHHhcCCC---c-----------
Confidence            45556655  6788999999999999999999999888884 57899999999998765431110   0           


Q ss_pred             hhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHh
Q 014342          236 AWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICR  315 (426)
Q Consensus       236 ~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~  315 (426)
                        ...+.            ..|+.|++++.+.+.+++|+-+|.+++++++||+    ++|   +++||||..||++....
T Consensus       213 --~~~V~------------evmT~p~~svd~~~~~feAml~m~r~~I~hl~V~----e~g---q~~Gilt~~dIl~l~s~  271 (610)
T COG2905         213 --TQKVS------------EVMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVT----EDG---QPLGILTLTDILRLFSQ  271 (610)
T ss_pred             --ccchh------------hhhccCceeecCcchHHHHHHHHHHhCCceeeee----cCC---eeeEEeeHHHHHHhhCC
Confidence              00111            1379999999999999999999999999999999    357   89999999999997664


Q ss_pred             h
Q 014342          316 H  316 (426)
Q Consensus       316 ~  316 (426)
                      +
T Consensus       272 ~  272 (610)
T COG2905         272 N  272 (610)
T ss_pred             C
Confidence            4

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.14  E-value=7.5e-10  Score=94.13  Aligned_cols=127  Identities=17%  Similarity=0.262  Sum_probs=88.8

Q ss_pred             cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCC--CChhh-hcccchhhhHH-HH
Q 014342          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSN--LTEEE-LETHTISAWKV-GK  241 (426)
Q Consensus       166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~--~~~~~-l~~~~i~~~~~-~~  241 (426)
                      .++++.++.++.+|++.|.+++...+||+|+ .++++|+++..|++..+.........  ..... .+......+.. ..
T Consensus         2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~-~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (132)
T cd04636           2 DVITVKKDDTLRDVVEILLTGKISGVPVVDN-EGRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKLLGKKV   80 (132)
T ss_pred             CCeEeCCCCcHHHHHHHHHHhCCCccceECC-CCCEEEEEeHHHHHHHHhccCCcccccccccccccchHHHHHHcCCCH
Confidence            4577899999999999999999999999996 47999999999998765422111000  00000 00000000000 00


Q ss_pred             HhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHH
Q 014342          242 LQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (426)
Q Consensus       242 ~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~  312 (426)
                      .            ..|.+++..+.+++++.+++..|.+.+.+++||++   + |   +++|++|..|++++
T Consensus        81 ~------------~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~---~-~---~~iGvit~~dl~~~  132 (132)
T cd04636          81 E------------EIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVD---D-G---KLVGIISRGDIIRS  132 (132)
T ss_pred             H------------HhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEE---C-C---EEEEEEEHHHhhcC
Confidence            0            12356678899999999999999999999999995   2 5   79999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=99.14  E-value=5.5e-10  Score=92.18  Aligned_cols=111  Identities=18%  Similarity=0.261  Sum_probs=83.4

Q ss_pred             cEEEEcCCccHHHHHHHHHHCC-CCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhh
Q 014342          166 KVTALDVNLAVKQAFHVLYEQG-LPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL  244 (426)
Q Consensus       166 ~vi~l~~~~sv~~A~~~l~~~~-i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~  244 (426)
                      .+.+++++.++.+|++.|.+++ ...+||+|. .++++|+++..|++........           ..++..+..     
T Consensus         2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~-~~~~~G~v~~~dl~~~~~~~~~-----------~~~v~~~~~-----   64 (114)
T cd04801           2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDN-EGRYVGIISLADLRAIPTSQWA-----------QTTVIQVMT-----   64 (114)
T ss_pred             CcceeCCCCCHHHHHHHHhccCCceeEEEEcC-CCcEEEEEEHHHHHHHHHhhcc-----------ccchhhhhc-----
Confidence            4577899999999999998775 899999985 4789999999998765421100           001111110     


Q ss_pred             ccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342          245 NLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (426)
Q Consensus       245 ~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~  311 (426)
                                  ...++.++.+++++.+|++.|.+++.+++||+++   ++   +++|++|..||++
T Consensus        65 ------------~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~---~~---~~~Gvl~~~di~~  113 (114)
T cd04801          65 ------------PAAKLVTVLSEESLAEVLKLLEEQGLDELAVVED---SG---QVIGLITEADLLR  113 (114)
T ss_pred             ------------ccccceEECCCCcHHHHHHHHHHCCCCeeEEEcC---CC---cEEEEEeccceec
Confidence                        0123568899999999999999999999999952   35   6999999999864

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=99.14  E-value=4.1e-10  Score=108.07  Aligned_cols=107  Identities=17%  Similarity=0.246  Sum_probs=87.8

Q ss_pred             CCCC-ceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccc
Q 014342          257 CPRP-LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  335 (426)
Q Consensus       257 ~~~~-~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~  335 (426)
                      |.++ +.++.+++++.++++.|.+.+++++||+|+   +|   +++|+++..|+++.+....        ....++.+++
T Consensus       161 m~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~---~g---~~~Givt~~dl~~~~~~~~--------~~~~~v~~im  226 (268)
T TIGR00393       161 MQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDE---NN---QLVGVFTDGDLRRALLGGG--------SLKSEVRDFM  226 (268)
T ss_pred             hCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeC---CC---CEEEEEEcHHHHHHHhcCC--------cccCcHHHhC
Confidence            4566 888999999999999999999999999952   35   6999999999988653211        1234455554


Q ss_pred             ccccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEe
Q 014342          336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYS  389 (426)
Q Consensus       336 i~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis  389 (426)
                                  .+++.++.+++++.+|+++|.++++..+||+|++|+++|+|+
T Consensus       227 ------------~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI~  268 (268)
T TIGR00393       227 ------------TLGPKTFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVLH  268 (268)
T ss_pred             ------------CCCCeEECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence                        247778999999999999999999999999999899999984

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=99.13  E-value=5.5e-10  Score=118.59  Aligned_cols=132  Identities=18%  Similarity=0.214  Sum_probs=102.6

Q ss_pred             HHHhccccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhh
Q 014342          149 SSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEE  228 (426)
Q Consensus       149 ~~~l~~~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~  228 (426)
                      .+.+...++.|+|.+  +..+++.+.++.+|.+.|.+++...+||+|+ +++++|++|..|+.+.+....         +
T Consensus       441 ~~~L~~~~V~dim~~--~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~-~g~lvGiVt~~dL~~~l~~~~---------~  508 (574)
T PRK01862        441 RERLRTTQMRELIQP--AQTVVPPTASVADMTRVFLEYPVKYLYVVDD-DGRFRGAVALKDITSDLLDKR---------D  508 (574)
T ss_pred             hhHHhhCcHHHHhcC--CCceeCCCCCHHHHHHHHHhCCCceEEEEcC-CCeEEEEEEHHHHHHHhhccc---------c
Confidence            466778889999876  4567889999999999999999999999996 479999999999876442110         0


Q ss_pred             hcccchhhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHh
Q 014342          229 LETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSD  308 (426)
Q Consensus       229 l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~d  308 (426)
                      ....++.+                   .|.+++.++.+++++.+|++.|.+++.+++||+|++ +.+   +++|+||++|
T Consensus       509 ~~~~~v~d-------------------im~~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~-~~~---~liGvIt~~D  565 (574)
T PRK01862        509 TTDKTAAD-------------------YAHTPFPLLTPDMPLGDALEHFMAFQGERLPVVESE-ASP---TLAGVVYKTS  565 (574)
T ss_pred             cccchHHH-------------------hccCCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCC-CCC---eEEEEEEHHH
Confidence            00001111                   135677889999999999999999999999999642 224   6999999999


Q ss_pred             HHHHHHh
Q 014342          309 ILKCICR  315 (426)
Q Consensus       309 il~~l~~  315 (426)
                      +++.+.+
T Consensus       566 Il~~l~~  572 (574)
T PRK01862        566 LLDAYRR  572 (574)
T ss_pred             HHHHHHh
Confidence            9998754

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.13  E-value=1.1e-09  Score=91.27  Aligned_cols=118  Identities=20%  Similarity=0.385  Sum_probs=87.4

Q ss_pred             cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHH-HHhh
Q 014342          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVG-KLQL  244 (426)
Q Consensus       166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~-~~~~  244 (426)
                      ++++++++.++.+|++.|.++++..+||+|.  ++++|++|..|+...+......  +.     .......+... ... 
T Consensus         2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~~~~~~--~~-----~~~~~~~~~~~~~~~-   71 (121)
T cd04633           2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG--GKLVGIVTEKDIADALRSFRPL--VR-----DRHQERRIRNLPVSD-   71 (121)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC--CEEEEEEchHHHHHhhhhhhhc--cc-----chhhhhhhhccCHHH-
Confidence            4678899999999999999999999999995  7999999999987655421110  00     00000001000 011 


Q ss_pred             ccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342          245 NLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (426)
Q Consensus       245 ~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~  311 (426)
                                 .|..++.++.+++++.+++..|.+.+.+.+||++   + +   +++|++|..|+++
T Consensus        72 -----------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~---~-~---~~~Gvi~~~dl~~  120 (121)
T cd04633          72 -----------IMTRPVITIEPDTSVSDVASLMLENNIGGLPVVD---D-G---KLVGIVTRTDILR  120 (121)
T ss_pred             -----------HccCCceEECCCCcHHHHHHHHHHcCCCcccEEE---C-C---EEEEEEEHHHhhc
Confidence                       1356778999999999999999999999999995   2 5   7999999999976

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=99.13  E-value=1.5e-09  Score=88.93  Aligned_cols=108  Identities=21%  Similarity=0.397  Sum_probs=86.2

Q ss_pred             CcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhh
Q 014342          165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL  244 (426)
Q Consensus       165 ~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~  244 (426)
                      .++++++.+.++.+|.+.|.+++...+||+|+  ++++|+++..|+...+....           ...++..+       
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~dl~~~~~~~~-----------~~~~~~~~-------   61 (110)
T cd04595           2 SPVKTVRPEATIEEARELLLRYGHTALPVVEG--GRVVGIISRRDVEKALRHGL-----------GHAPVKDY-------   61 (110)
T ss_pred             CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeC--CEEEEEEEHHHHHHHHhccc-----------ccCcHHHH-------
Confidence            35788899999999999999999999999996  79999999999876442100           00111111       


Q ss_pred             ccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342          245 NLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (426)
Q Consensus       245 ~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~  311 (426)
                                  |..+++++.+++++.+++..|.+++.+.+||++    +|   +++|++|..|+++
T Consensus        62 ------------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~----~~---~~~Gvvt~~di~~  109 (110)
T cd04595          62 ------------MSTDVVTVPPDTPLSEVQELMVEHDIGRVPVVE----DG---RLVGIVTRTDLLR  109 (110)
T ss_pred             ------------hcCCCEEECCCCcHHHHHHHHHHcCCCeeEEEe----CC---EEEEEEEhHHhhc
Confidence                        245678899999999999999999999999994    35   7999999999875

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.13  E-value=1.1e-09  Score=89.75  Aligned_cols=110  Identities=17%  Similarity=0.288  Sum_probs=86.0

Q ss_pred             cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhc
Q 014342          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (426)
Q Consensus       166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~  245 (426)
                      +.++++.+.++.+|.+.|.+++...+||.|+  ++++|+++..|+...+....  ..       ...++..+        
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~~--~~-------~~~~i~~~--------   62 (111)
T cd04589           2 PPLIVDASTSIRDAARLMREHGADALLVRDG--DPRLGIVTRTDLLDAVLLDG--LP-------SSTPVGEI--------   62 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEecC--CeEEEEEEHHHHHHHHHcCC--CC-------CCCCHHHH--------
Confidence            4577899999999999999999999999985  68999999999876543100  00       00011111        


Q ss_pred             cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHH
Q 014342          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (426)
Q Consensus       246 ~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~  312 (426)
                                 |..++..+.+++++.++++.|.+++.+.+||++    ++   +++|++|..|+++|
T Consensus        63 -----------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~----~~---~~~G~it~~dl~~~  111 (111)
T cd04589          63 -----------ATFPLITVDPDDFLFNALLLMTRHRIHRVVVRE----GG---EVVGVLEQTDLLSF  111 (111)
T ss_pred             -----------hCCCcEEECCCCcHHHHHHHHHHhCccEEEEee----CC---EEEEEEEhHHhhcC
Confidence                       345678899999999999999999999999995    25   79999999999864

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.13  E-value=9.8e-10  Score=90.07  Aligned_cols=109  Identities=22%  Similarity=0.332  Sum_probs=86.0

Q ss_pred             cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhc
Q 014342          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (426)
Q Consensus       166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~  245 (426)
                      +.++++++.++.+|.+.|.+.+...+||+|+ +++++|+++..|+...+.....           ...+..+        
T Consensus         2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~-~~~~~G~v~~~~l~~~~~~~~~-----------~~~v~~~--------   61 (111)
T cd04639           2 HFETLSPADTLDDAADALLATTQHEFPVVDG-DGHLVGLLTRDDLIRALAEGGP-----------DAPVRGV--------   61 (111)
T ss_pred             CceEcCCCCcHHHHHHHHHHcCCCcceEECC-CCcEEEEeeHHHHHHHHHhcCC-----------CCcHHHH--------
Confidence            4567889999999999999999999999985 4789999999998765542110           0011111        


Q ss_pred             cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (426)
Q Consensus       246 ~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~  311 (426)
                                 |..++.++.+++++.+|++.|.+++...+||+++   .+   +++|++|.+|+.+
T Consensus        62 -----------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~---~~---~~~G~it~~dl~~  110 (111)
T cd04639          62 -----------MRRDFPTVSPSATLDAVLRLMQQGGAPAVPVVDG---SG---RLVGLVTLENVGE  110 (111)
T ss_pred             -----------hcCCCcEECCCCcHHHHHHHHHhcCCceeeEEcC---CC---CEEEEEEHHHhhc
Confidence                       2456788999999999999999999999999952   25   6999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.12  E-value=1.9e-09  Score=90.05  Aligned_cols=121  Identities=17%  Similarity=0.370  Sum_probs=89.2

Q ss_pred             cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhc
Q 014342          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (426)
Q Consensus       166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~  245 (426)
                      ++++++++.++.+|.+.|.++++..+||+|+  ++++|+++..|+...+....... .....+     ...+......+ 
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~~~~~-~~~~~~-----~~~~~~~~~~~-   72 (122)
T cd04637           2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED--NELVGVISDRDYLKAISPFLGTA-GETEKD-----LATLNRRAHQI-   72 (122)
T ss_pred             CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC--CeEEEEEEHHHHHHHHHHHhccc-cchHHH-----HHHHHhHHHHh-
Confidence            4678899999999999999999999999995  79999999999887654322110 000000     01111111111 


Q ss_pred             cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHH
Q 014342          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (426)
Q Consensus       246 ~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~  312 (426)
                                 |..+++.+.+++++.++++.|.+++...+||+++   ++   +++|++|..|++++
T Consensus        73 -----------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~---~~---~~~Gvit~~dll~~  122 (122)
T cd04637          73 -----------MTRDPITVSPDTPVDEASKLLLENSISCLPVVDE---NG---QLIGIITWKDLLKY  122 (122)
T ss_pred             -----------hcCCCeeeCCCCcHHHHHHHHHHcCCCeEeEECC---CC---CEEEEEEHHHhhhC
Confidence                       3466888999999999999999999999999952   35   69999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=99.12  E-value=7.2e-10  Score=94.61  Aligned_cols=127  Identities=24%  Similarity=0.367  Sum_probs=88.4

Q ss_pred             CcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCC--CCC----ChhhhcccchhhhH
Q 014342          165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNG--SNL----TEEELETHTISAWK  238 (426)
Q Consensus       165 ~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~--~~~----~~~~l~~~~i~~~~  238 (426)
                      ..+.+++.+.++.+|++.|.+++...+||+|+ +++++|+++..|+...+...+...  ...    ..+...........
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (135)
T cd04586           2 TDVVTVSPETSVAEAARLMLDNHISGLPVVDD-DGRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVRSHG   80 (135)
T ss_pred             CCCEEeCCCCCHHHHHHHHHHcCCCCceEECC-CCCEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHHHhcC
Confidence            46788999999999999999999999999995 479999999999876543211000  000    00000000000000


Q ss_pred             HHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342          239 VGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (426)
Q Consensus       239 ~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~  311 (426)
                      .....            .|..++.++.+++++.+++..|.+.+.+++||++    .|   +++|++|..|+++
T Consensus        81 ~~v~~------------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd----~g---~~~Gvit~~di~~  134 (135)
T cd04586          81 RKVAD------------VMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR----GG---RLVGIVSRADLLR  134 (135)
T ss_pred             CCHHH------------HhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec----CC---EEEEEEEhHhhhc
Confidence            00011            1356788999999999999999999999999994    35   7999999999875

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.11  E-value=1.8e-09  Score=88.79  Aligned_cols=110  Identities=23%  Similarity=0.426  Sum_probs=85.5

Q ss_pred             EEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhcc
Q 014342          167 VTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNL  246 (426)
Q Consensus       167 vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~  246 (426)
                      ..++.++.++.+|++.|.++++..+||+|+ .++++|++|..|+...+...         ..+....+..          
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~-~~~~~G~v~~~dl~~~~~~~---------~~~~~~~i~~----------   62 (113)
T cd04615           3 PSCVVLNTDIARAVAEMYTSGSRALPVVDD-KKRLVGIITRYDVLSYALES---------EELKDAKVRE----------   62 (113)
T ss_pred             CEEeeCCCcHHHHHHHHHHcCCceEeEEcC-CCCEEEEEEHHHHHHhhhhh---------hhhcCCcHHH----------
Confidence            567789999999999999999999999996 47899999999987643211         0001111111          


Q ss_pred             ccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342          247 KRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (426)
Q Consensus       247 ~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~  311 (426)
                               .|..++.++.+++++.++++.|.+++.+.+||++   +.|   +++|++|..++++
T Consensus        63 ---------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd---~~g---~~~Gvvt~~dl~~  112 (113)
T cd04615          63 ---------VMNSPVITIDANDSIAKARWLMSNNNISRLPVLD---DKG---KVGGIVTEDDILR  112 (113)
T ss_pred             ---------hccCCceEECCCCcHHHHHHHHHHcCCCeeeEEC---CCC---eEEEEEEHHHhhc
Confidence                     1345678899999999999999999999999995   235   7999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.11  E-value=1e-09  Score=90.30  Aligned_cols=112  Identities=23%  Similarity=0.347  Sum_probs=86.0

Q ss_pred             cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhc
Q 014342          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (426)
Q Consensus       166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~  245 (426)
                      ++++++.+.++.+|.+.|.++++..+||+|+ .++++|+++..|++..+...... .      .....+..         
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~G~v~~~~l~~~~~~~~~~-~------~~~~~v~~---------   64 (114)
T cd04629           2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDD-NGNLVGFLSEQDCLKQLLESSYH-C------DGVATVRD---------   64 (114)
T ss_pred             CCeEeCCCCCHHHHHHHHHhcCCCCccEECC-CCeEEEEeehHHHHHHhhhhhhc-c------CCCccHHH---------
Confidence            4577899999999999999999999999985 47899999999987654321000 0      00001111         


Q ss_pred             cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (426)
Q Consensus       246 ~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~  311 (426)
                                .|..++.++.+++++.++++.|.+++.+.+||++   + |   +++|++|..||++
T Consensus        65 ----------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~---~-~---~~~Gvit~~di~~  113 (114)
T cd04629          65 ----------IMTTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVD---D-G---KLVGQISRRDVLR  113 (114)
T ss_pred             ----------HhccCceEECCCCcHHHHHHHHHHhCCCccCEEE---C-C---EEEEEEEHHHHhc
Confidence                      1245678899999999999999999999999995   2 5   7999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.11  E-value=1.6e-09  Score=92.83  Aligned_cols=124  Identities=15%  Similarity=0.287  Sum_probs=87.3

Q ss_pred             cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChh--hhcc-------cchhh
Q 014342          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEE--ELET-------HTISA  236 (426)
Q Consensus       166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~--~l~~-------~~i~~  236 (426)
                      .+.++..+.++.+|++.|.+++...+||+|+ .++++|++|..|++..+......  .....  .+..       .....
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~-~~~~~Giv~~~dl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~   78 (135)
T cd04621           2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDD-NGKPVGVITYRDLAFAEFEDNER--GLPKKSIKMKRKAGQKRYRYVKE   78 (135)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCCCcceEECC-CCCEEEEEeHHHHHHHhhccccc--ccchhhhhhhhhccccccccccc
Confidence            3567889999999999999999999999995 57999999999988755311100  00000  0000       00000


Q ss_pred             hHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342          237 WKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (426)
Q Consensus       237 ~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~  311 (426)
                      .......            .|..++..+.+++++.++++.|.+++.+++||++   + |   +++|+||++++++
T Consensus        79 ~~~~v~~------------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~---~-~---~~~Gvit~~di~~  134 (135)
T cd04621          79 VPLVAED------------IMTEEIITVSPNDDVVDAAKLMLEANISGLPVVD---N-D---NIVGVITKTDICR  134 (135)
T ss_pred             ccccHHH------------hcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEe---C-C---EEEEEEEHHHHhh
Confidence            0000011            2456778899999999999999999999999995   2 5   7999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.11  E-value=1.5e-09  Score=89.14  Aligned_cols=112  Identities=25%  Similarity=0.342  Sum_probs=86.9

Q ss_pred             cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhc
Q 014342          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (426)
Q Consensus       166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~  245 (426)
                      ++.++..+.++.+|.+.|.++++..+||+|++ ++++|+++..|+...+....         .....++..+        
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~G~v~~~~l~~~~~~~~---------~~~~~~v~~~--------   63 (114)
T cd04613           2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDD-GRLVGIVSLDDIREILFDPS---------LYDLVVASDI--------   63 (114)
T ss_pred             CceeeCCCCcHHHHHHHHHhCCCcceeEECCC-CCEEEEEEHHHHHHHHhccc---------ccccEEHHHh--------
Confidence            46778999999999999999999999999964 78999999999876442100         0000111111        


Q ss_pred             cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (426)
Q Consensus       246 ~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~  311 (426)
                                 |..++.++.+++++.++++.|.+.+.+.+||++++  .+   +++|++|..|++.
T Consensus        64 -----------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~--~~---~~~Gvvt~~di~~  113 (114)
T cd04613          64 -----------MTKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDDD--PG---KLLGILSRSDLLS  113 (114)
T ss_pred             -----------ccCCCcEEcCCCCHHHHHHHHhhCCccEeeEEeCC--CC---EEEEEEEhHHhhc
Confidence                       35667889999999999999999999999999521  35   7999999999875

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.11  E-value=2e-09  Score=88.18  Aligned_cols=109  Identities=19%  Similarity=0.365  Sum_probs=85.7

Q ss_pred             cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhc
Q 014342          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (426)
Q Consensus       166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~  245 (426)
                      ++.+++.+.++.+|.+.|.++++..+||.|+  ++++|+++..|+...+..  ..   .  .  ...++..+        
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~~--~~---~--~--~~~~i~~~--------   62 (111)
T cd04800           2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDD--GRLVGIVTDRDLRNRVVA--EG---L--D--PDTPVSEV--------   62 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHHhc--cC---C--C--ccCCHHHH--------
Confidence            4678899999999999999999999999995  799999999998754321  00   0  0  00111211        


Q ss_pred             cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (426)
Q Consensus       246 ~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~  311 (426)
                                 +..+++++.+++++.++++.|.+.+.+++||++   + |   +++|++|.+|+++
T Consensus        63 -----------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~---~-~---~~~Giit~~di~~  110 (111)
T cd04800          63 -----------MTAPPITIPPDATVFEALLLMLERGIHHLPVVD---D-G---RLVGVISATDLLR  110 (111)
T ss_pred             -----------hCCCCeEECCCCcHHHHHHHHHHcCCCeeeEeE---C-C---EEEEEEEHHHhhc
Confidence                       245678899999999999999999999999995   2 5   7999999999875

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.10  E-value=2e-09  Score=88.24  Aligned_cols=109  Identities=12%  Similarity=0.247  Sum_probs=85.6

Q ss_pred             cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhc
Q 014342          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (426)
Q Consensus       166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~  245 (426)
                      ++.+++.+.++.+|++.|.+++...+||+|+ .++++|+++..|+.......  .        .....+...        
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~~G~v~~~dl~~~~~~~--~--------~~~~~v~~~--------   62 (111)
T cd04626           2 DFPTIDEDASIREALHEMLKYNTNEIIVKDN-EEKLKGVVTFTDILDLDLFE--S--------FLEKKVFNI--------   62 (111)
T ss_pred             CceEECCCccHHHHHHHHHHhCCCeEEEEcC-CCCEEEEEehHHhHHHHhhc--c--------cccCcHHHH--------
Confidence            4677899999999999999999999999986 47999999999987543210  0        000011111        


Q ss_pred             cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (426)
Q Consensus       246 ~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~  311 (426)
                                 |..++.++.+++++.+|++.|.+++.+++||++   + |   +++|+||..|++.
T Consensus        63 -----------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~---~-~---~~~G~it~~di~~  110 (111)
T cd04626          63 -----------VSQDVFYVNEEDTIDEALDIMREKQIGRLPVVD---D-N---KLIGVVRTKDILD  110 (111)
T ss_pred             -----------hcCCcEEEcCCCcHHHHHHHHHHcCCCeeeEeE---C-C---EEEEEEEhHHhcc
Confidence                       346778899999999999999999999999995   2 5   7999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.09  E-value=1.9e-09  Score=89.54  Aligned_cols=120  Identities=21%  Similarity=0.357  Sum_probs=87.4

Q ss_pred             cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhc
Q 014342          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (426)
Q Consensus       166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~  245 (426)
                      ++.+++.+.++.+|++.|.++++..+||+|.  ++++|+++..|+..........   ....+... ....  .....  
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~i~~~~l~~~~~~~~~~---~~~~~~~~-~~~~--~~~~~--   71 (122)
T cd04585           2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR--GKLVGIVTDRDLKLASPSKATT---LDIWELYY-LLSK--IKVSD--   71 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHhCCcceeeEecC--CeEEEEEeHHHHHHhhhccccc---ccchhhhh-hhcc--cCHHH--
Confidence            4678899999999999999999999999996  7999999999987654311100   00000000 0000  00011  


Q ss_pred             cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (426)
Q Consensus       246 ~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~  311 (426)
                                .|.++++++.+++++.+++..|.+.+.+++||++   +.|   +++|++|..||++
T Consensus        72 ----------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~---~~~---~~~Gvvt~~di~~  121 (122)
T cd04585          72 ----------IMTRDPITVSPDASVEEAAELMLERKISGLPVVD---DQG---RLVGIITESDLFR  121 (122)
T ss_pred             ----------hccCCCeEeCCCCcHHHHHHHHHHcCCCceeEEC---CCC---cEEEEEEHHHhhh
Confidence                      2356788999999999999999999999999995   235   6999999999976

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=99.09  E-value=3.7e-09  Score=108.67  Aligned_cols=115  Identities=16%  Similarity=0.323  Sum_probs=91.7

Q ss_pred             cccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCC--CcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchh
Q 014342          158 YELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFK--GRFVGVLSALDFILILRELGTNGSNLTEEELETHTIS  235 (426)
Q Consensus       158 ~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~--~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~  235 (426)
                      .+.|..  ++++++++.++.+|+++|.+++++.+||+|++.  ++++|+||.+|+....    ..          ..++.
T Consensus        83 ~~~~~~--~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~----~~----------~~~V~  146 (450)
T TIGR01302        83 ENGIIS--DPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFVK----DK----------GKPVS  146 (450)
T ss_pred             cCceec--CceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhh----cC----------CCCHH
Confidence            444443  678999999999999999999999999999643  6999999999985311    00          01122


Q ss_pred             hhHHHHHhhccccccCCCCCCCC-CCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHH
Q 014342          236 AWKVGKLQLNLKRQMDGNGRPCP-RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCI  313 (426)
Q Consensus       236 ~~~~~~~~~~~~~~~~g~~~~~~-~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l  313 (426)
                      .+                   |. .+++++.+++++.++++.|.+++.+.+||+|   +.|   +++|+||..||++.+
T Consensus       147 dv-------------------m~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVD---e~G---~lvGiVT~~DIl~~~  200 (450)
T TIGR01302       147 EV-------------------MTREEVITVPEGIDLEEALKVLHEHRIEKLPVVD---KNG---ELVGLITMKDIVKRR  200 (450)
T ss_pred             Hh-------------------hCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEc---CCC---cEEEEEEhHHhhhcc
Confidence            21                   34 4788999999999999999999999999995   345   699999999999875

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.09  E-value=2.9e-09  Score=87.06  Aligned_cols=108  Identities=15%  Similarity=0.261  Sum_probs=85.4

Q ss_pred             cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhc
Q 014342          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (426)
Q Consensus       166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~  245 (426)
                      ++++++.+.++.+|.+.|.++++..+||+|+  ++++|+++..|++........           ...+..+        
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~~l~~~~~~~~~-----------~~~v~~~--------   60 (110)
T cd04588           2 PLITLNPNATLREAARLFNTHHIHGAPVVDD--GKLVGIVTLSDIAHAIARGLE-----------LAKVKDV--------   60 (110)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC--CEEEEEEEHHHHHHHHhcccc-----------ccCHHHH--------
Confidence            4677899999999999999999999999985  699999999998765431100           0011111        


Q ss_pred             cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (426)
Q Consensus       246 ~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~  311 (426)
                                 +..++.++.+++++.++++.|.+.+.+.+||++   ++|   +++|++|..|+++
T Consensus        61 -----------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~---~~~---~~~G~i~~~dl~~  109 (110)
T cd04588          61 -----------MTKDVITIDEDEQLYDAIRLMNKHNVGRLIVTD---DEG---RPVGIITRTDILR  109 (110)
T ss_pred             -----------hcCCceEECCCCCHHHHHHHHHhcCCCEEEEEC---CCC---CEEEEEEhHHhhc
Confidence                       245678899999999999999999999999995   235   6999999999874

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=99.08  E-value=9.6e-10  Score=113.12  Aligned_cols=114  Identities=16%  Similarity=0.189  Sum_probs=93.0

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHh-----CCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccc
Q 014342          256 PCPRPLVQAGPYDSLKEVALKILQ-----NKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQP  330 (426)
Q Consensus       256 ~~~~~~v~v~~~~sl~~a~~~m~~-----~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~  330 (426)
                      .|++.++++.++.++.+|++.|.+     ++...++|+|   +.+   +++|+++.+|++..     .        .+.+
T Consensus       136 iMt~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd---~~~---~l~GvV~l~dLl~a-----~--------~~~~  196 (449)
T TIGR00400       136 IMTIEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTN---ESK---HLKGVLSIRDLILA-----K--------PEEI  196 (449)
T ss_pred             hCcCceEEECCCCcHHHHHHHHHhcCCCccceeEEEEEC---CCC---eEEEEEEHHHHhcC-----C--------CCCc
Confidence            578889999999999999999975     4567889885   234   69999999998742     0        0223


Q ss_pred             cccccccccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHhcc
Q 014342          331 VSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDK  400 (426)
Q Consensus       331 v~~l~i~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~~~  400 (426)
                      ++++|            .++++++++++++.+|++.|.++++..+||||++|+++|+||..|+++.+.+.
T Consensus       197 v~~im------------~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l~~~  254 (449)
T TIGR00400       197 LSSIM------------RSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDIIDVIQSE  254 (449)
T ss_pred             HHHHh------------CCCCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHHHHHHHHhh
Confidence            44443            24677899999999999999999999999999999999999999999877654

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=99.08  E-value=3.1e-09  Score=86.91  Aligned_cols=109  Identities=18%  Similarity=0.303  Sum_probs=85.6

Q ss_pred             cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhc
Q 014342          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (426)
Q Consensus       166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~  245 (426)
                      ++.+++++.++.+|++.|.+++...+||.|+  ++++|+++..|+.........          ....+..         
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~~l~~~~~~~~~----------~~~~v~~---------   60 (111)
T cd04611           2 QILTCPPDTSLAEAASRMRERRISSIVVVDD--GRPLGIVTERDILRLLASGPD----------LQTPVGE---------   60 (111)
T ss_pred             CceEECCCCcHHHHHHHHHHcCCCEEEEeeC--CEEEEEEeHHHHHHHHhcCCC----------CCcCHHH---------
Confidence            4577899999999999999999999999985  799999999998765431100          0011111         


Q ss_pred             cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (426)
Q Consensus       246 ~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~  311 (426)
                                .|..+++++.+++++.++++.|.+.+.+.+||+++   +|   +++|++|.+++++
T Consensus        61 ----------~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~---~~---~~~Gvi~~~di~~  110 (111)
T cd04611          61 ----------VMSSPLLTVPADTSLYDARQLMREHGIRHLVVVDD---DG---ELLGLLSQTDLLQ  110 (111)
T ss_pred             ----------hcCCCceEECCCCCHHHHHHHHHHcCCeEEEEECC---CC---cEEEEEEhHHhhc
Confidence                      12456788999999999999999999999999952   35   6999999999875

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.08  E-value=1.4e-09  Score=88.28  Aligned_cols=104  Identities=12%  Similarity=0.150  Sum_probs=83.5

Q ss_pred             cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhc
Q 014342          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (426)
Q Consensus       166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~  245 (426)
                      .+++++.+.++.+|++.|.+++...+||+|+ +++++|++|..|+.....           .     .+..         
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~-~g~~~Giv~~~dl~~~~~-----------~-----~~~~---------   55 (106)
T cd04582           2 EPITVRPDDPLSDALGLMDDSDLRALTVVDA-DGQPLGFVTRREAARASG-----------G-----CCGD---------   55 (106)
T ss_pred             CCcEecCCCcHHHHHHHHHhcCCCEEEEECC-CCCEEEEEeHHHHHHhcc-----------c-----chhh---------
Confidence            4567889999999999999999999999985 479999999999864210           0     0111         


Q ss_pred             cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (426)
Q Consensus       246 ~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~  311 (426)
                                .|.+....+.+++++.++++.|.++++..+||+++   ++   +++|++|.+++++
T Consensus        56 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~---~~---~~~Gvi~~~~l~~  105 (106)
T cd04582          56 ----------HAEPFKVTVSVDDDLRIVLSRMFAHDMSWLPCVDE---DG---RYVGEVTQRSIAD  105 (106)
T ss_pred             ----------hcccCCEEECCCCCHHHHHHHHHHCCCCeeeEECC---CC---cEEEEEEHHHhhc
Confidence                      12445677999999999999999999999999952   35   6999999999875

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.07  E-value=1.9e-09  Score=90.85  Aligned_cols=116  Identities=16%  Similarity=0.230  Sum_probs=82.0

Q ss_pred             cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHH--HHhccCCCCCChhhhcccchhhhHHHHHh
Q 014342          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILIL--RELGTNGSNLTEEELETHTISAWKVGKLQ  243 (426)
Q Consensus       166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l--~~~~~~~~~~~~~~l~~~~i~~~~~~~~~  243 (426)
                      +++++..+.++.+|++.|.+++...+||+|+ .++++|+++..|+....  ........     .....++..+      
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~-~~~~~Giv~~~dl~~~~~~~~~~~~~~-----~~~~~~v~~i------   69 (126)
T cd04640           2 KPIVIPADTSIDEALELMIKHGVRLLLVVDS-DDNFIGVITAVDLLGEEPIKRIQEGGI-----SRSELTVADV------   69 (126)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCcEEEEEcC-CCcEEEEEEHHHHhhChhhHHHHHcCC-----CchheEHHHh------
Confidence            4678899999999999999999999999995 47899999999987521  11111000     0000111111      


Q ss_pred             hccccccCCCCCCCCCCce--Ee----CCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342          244 LNLKRQMDGNGRPCPRPLV--QA----GPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (426)
Q Consensus       244 ~~~~~~~~g~~~~~~~~~v--~v----~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~  311 (426)
                                   |..+..  .+    .+++++.++++.|.+++.+.+||+++  +.|   +++|+||.+||++
T Consensus        70 -------------m~~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~--~~~---~~~G~it~~di~~  125 (126)
T cd04640          70 -------------MTPKEDLKALDLEELENASVGDVVETLKASGRQHALVVDR--EHH---QIRGIISTSDIAR  125 (126)
T ss_pred             -------------cCchhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEEC--CCC---EEEEEEeHHHHhh
Confidence                         222222  22    36889999999999999999999963  225   6999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=99.07  E-value=2.6e-09  Score=87.31  Aligned_cols=100  Identities=18%  Similarity=0.256  Sum_probs=84.7

Q ss_pred             cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCC--CCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHh
Q 014342          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDF--KGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQ  243 (426)
Q Consensus       166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~--~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~  243 (426)
                      .+..++++.++.++.+.|.+++...+||+|+.  .++++|+++..|+......                           
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~~---------------------------   55 (105)
T cd04591           3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALKN---------------------------   55 (105)
T ss_pred             ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHHH---------------------------
Confidence            46788999999999999999999999999963  4799999999997644321                           


Q ss_pred             hccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342          244 LNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (426)
Q Consensus       244 ~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~  311 (426)
                      +            |..++.++.+++++.++++.|.+++.+.+||++    +|   +++|++|..|+++
T Consensus        56 ~------------m~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~----~~---~~~Gvvt~~dl~~  104 (105)
T cd04591          56 Y------------IDPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVD----EG---RLVGIITRKDLLK  104 (105)
T ss_pred             h------------ccCCCceECCCCcHHHHHHHHHHcCCCEEEEEE----CC---eEEEEEEhhhhhc
Confidence            1            245677899999999999999999999999993    35   7999999999875

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.06  E-value=2.9e-09  Score=87.92  Aligned_cols=110  Identities=16%  Similarity=0.296  Sum_probs=82.4

Q ss_pred             cEEEEcCCccHHHHHHHHHHCC-CCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhh
Q 014342          166 KVTALDVNLAVKQAFHVLYEQG-LPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL  244 (426)
Q Consensus       166 ~vi~l~~~~sv~~A~~~l~~~~-i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~  244 (426)
                      +.++++.+.++.+|++.|.+++ ...+||.|.  ++++|+++..|++..+..-.    .     ....++..+       
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~----~-----~~~~~i~~~-------   63 (115)
T cd04620           2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVEK--GRLLGIFTERDIVRLTAIGK----D-----LSDLPIGEV-------   63 (115)
T ss_pred             CCeEeCCCCcHHHHHHHHHhcCCCceEEEcCC--CcEEEEEeHHHHHHHHhcCC----C-----ccccCHHHh-------
Confidence            4567889999999999999888 667777773  78999999999876543100    0     000111111       


Q ss_pred             ccccccCCCCCCCCCCceEeCCC--CCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342          245 NLKRQMDGNGRPCPRPLVQAGPY--DSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (426)
Q Consensus       245 ~~~~~~~g~~~~~~~~~v~v~~~--~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~  311 (426)
                                  |..+++++.++  +++.+|++.|.+++.+.+||+++   +|   +++|++|++|+++
T Consensus        64 ------------~~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~---~~---~~~Gvit~~dl~~  114 (115)
T cd04620          64 ------------MTQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDD---QG---QLIGLVTAESIRQ  114 (115)
T ss_pred             ------------cCCCcEEEecccccCHHHHHHHHHHhCCceEEEEcC---CC---CEEEEEEhHHhhc
Confidence                        34567778877  78999999999999999999952   35   6999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.06  E-value=2.1e-09  Score=89.65  Aligned_cols=120  Identities=15%  Similarity=0.292  Sum_probs=86.4

Q ss_pred             cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhc
Q 014342          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (426)
Q Consensus       166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~  245 (426)
                      +++++.++.++.+|++.|.+++...+||+|. .++++|+++..|++....... ..     +...... .........  
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~~G~v~~~~l~~~~~~~~-~~-----~~~~~~~-~~~~~~~~~--   71 (122)
T cd04635           2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQK-AGELIGIITRRDIIRAGSVRT-SV-----EDQQRTQ-TKASPTVEK--   71 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcccEECC-CCcEEEEEEcHHHHhhccccc-cc-----cchhhhh-hhccCcHHH--
Confidence            4678899999999999999999999999985 579999999999875321000 00     0000000 000000111  


Q ss_pred             cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (426)
Q Consensus       246 ~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~  311 (426)
                                .+..+++++.+++++.+++..|.+++.+.+||+++   .|   +++|++|..|+++
T Consensus        72 ----------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~---~g---~~~Gvit~~dl~~  121 (122)
T cd04635          72 ----------IMSTPVYSVTPDDSIATAVELMLEHDIGRLPVVNE---KD---QLVGIVDRHDVLK  121 (122)
T ss_pred             ----------HhcCCCeeECCCCCHHHHHHHHHHcCCCeeeEEcC---CC---cEEEEEEhHHhhc
Confidence                      13466788999999999999999999999999952   35   7999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.06  E-value=3.7e-09  Score=86.41  Aligned_cols=109  Identities=22%  Similarity=0.432  Sum_probs=85.9

Q ss_pred             cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhc
Q 014342          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (426)
Q Consensus       166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~  245 (426)
                      ++++++.+.++.+|++.|.+++++.+||+|.  ++++|+++..|+........     .  ..   ..+.       .  
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~-----~--~~---~~~~-------~--   60 (111)
T cd04612           2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDD--GRLVGIVTLADIRRVPAEGR-----E--AT---VLVG-------D--   60 (111)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcceEeeC--CeEEEEEEHHHHHHHHhcCc-----c--cc---cCHH-------H--
Confidence            4678899999999999999999999999995  79999999999875432100     0  00   0011       1  


Q ss_pred             cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (426)
Q Consensus       246 ~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~  311 (426)
                                .|..++.++.+++++.++++.|.+++.+.+||+++   ++   +++|++|..||++
T Consensus        61 ----------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~---~~---~~~G~it~~di~~  110 (111)
T cd04612          61 ----------VMTRDPVTASPDETLRDALKRMAERDIGRLPVVDD---SG---RLVGIVSRSDLLR  110 (111)
T ss_pred             ----------hccCCCeEECCCCCHHHHHHHHHhCCCCeeeEEcC---CC---CEEEEEEHHHhhh
Confidence                      13567889999999999999999999999999952   35   6999999999875

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=99.06  E-value=3.2e-09  Score=86.76  Aligned_cols=105  Identities=22%  Similarity=0.298  Sum_probs=84.6

Q ss_pred             cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhc
Q 014342          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (426)
Q Consensus       166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~  245 (426)
                      ++++++++.++.+|++.|.+++...+||+|+ .++++|+++..|+....    .           ..++..+        
T Consensus         3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~-~~~~~G~v~~~~l~~~~----~-----------~~~v~~~--------   58 (108)
T cd04596           3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDE-KNKVVGIVTSKDVAGKD----P-----------DTTIEKV--------   58 (108)
T ss_pred             ccEEeCCCCCHHHHHHHHHHcCCCceeEECC-CCeEEEEecHHHHhccc----c-----------cccHHHH--------
Confidence            4678899999999999999999999999985 57999999999975310    0           0011111        


Q ss_pred             cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (426)
Q Consensus       246 ~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~  311 (426)
                                 |..++.++.+++++.++++.|.+++.+.+||++   ++|   +++|++|..|+++
T Consensus        59 -----------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~---~~~---~~~G~it~~di~~  107 (108)
T cd04596          59 -----------MTKNPITVNPKTSVASVAHMMIWEGIEMLPVVD---DNK---KLLGIISRQDVLK  107 (108)
T ss_pred             -----------hcCCCeEECCCCCHHHHHHHHHHcCCCeeeEEc---CCC---CEEEEEEHHHhhc
Confidence                       245678899999999999999999999999995   245   6999999999875

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=99.05  E-value=3.3e-09  Score=90.91  Aligned_cols=113  Identities=17%  Similarity=0.159  Sum_probs=77.7

Q ss_pred             cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhh---cccchhhhHHHHH
Q 014342          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEEL---ETHTISAWKVGKL  242 (426)
Q Consensus       166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l---~~~~i~~~~~~~~  242 (426)
                      .++++.++.++.+|++.|.++++.++||+|+ .++++|+||..|++..+.......... .++.   ....+..+.... 
T Consensus         2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~-~g~l~Givt~~Dl~~~~~~~~~~~~~~-~~~~~~~~~~~v~~i~~~~-   78 (133)
T cd04592           2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDS-DDFLEGILTLGDIQRFLFTNKTTRVQP-EDETKQTNTCLVSSVCTKG-   78 (133)
T ss_pred             CceEECCCCCHHHHHHHHHHcCCCEEEEECC-CCeEEEEEEHHHHHHHHhhcccccccc-chhhcccccccHHHHhhhh-
Confidence            4678999999999999999999999999996 479999999999887664211100000 0000   000011111000 


Q ss_pred             hhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEec
Q 014342          243 QLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHS  290 (426)
Q Consensus       243 ~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~  290 (426)
                       +.        ...|..+++++.+++++.+|++.|.+++++++||+++
T Consensus        79 -~~--------~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~  117 (133)
T cd04592          79 -IS--------YGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKR  117 (133)
T ss_pred             -hh--------hcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecC
Confidence             00        0013567889999999999999999999999999974

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.04  E-value=7.5e-09  Score=84.89  Aligned_cols=110  Identities=18%  Similarity=0.334  Sum_probs=84.9

Q ss_pred             cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhc
Q 014342          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (426)
Q Consensus       166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~  245 (426)
                      +++++.++.++.+|++.|.+++...+||+|+  ++++|+++..|+...+.... +..       ...++..         
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~-~~~-------~~~~~~~---------   62 (112)
T cd04802           2 NVITVDPDTTVYEAANIMTENNIGRLIVVDN--EKPVGIITERDLVKKVVSRN-LKP-------REVPVGE---------   62 (112)
T ss_pred             CcEEECCCCCHHHHHHHHHHCCCCEEEEEEC--CEEEEEEEHHHHHHHHhhcc-CCc-------ccCCHHH---------
Confidence            4677899999999999999999999999995  38999999999886543110 000       0001111         


Q ss_pred             cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (426)
Q Consensus       246 ~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~  311 (426)
                                .|..++..+.+++++.++++.|.+++.+.+||+++    +   +++|++|..|+++
T Consensus        63 ----------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~----~---~~~Gvi~~~di~~  111 (112)
T cd04802          63 ----------VMSTPLITIDPNASLNEAAKLMAKHGIKRLPVVDD----D---ELVGIVTTTDIVM  111 (112)
T ss_pred             ----------hcCCCcEEECCCCCHHHHHHHHHHcCCCeeEEeeC----C---EEEEEEEhhhhhc
Confidence                      13456788999999999999999999999999952    3   5999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.04  E-value=3.9e-09  Score=109.24  Aligned_cols=132  Identities=19%  Similarity=0.271  Sum_probs=96.1

Q ss_pred             ccHHHHHHHHHHHHHHhccccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCC--CCcEEEEeehHHHHHH
Q 014342          136 YSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDF--KGRFVGVLSALDFILI  213 (426)
Q Consensus       136 ~~~~~l~~~~~~~~~~l~~~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~--~~~~vGilT~~Dli~~  213 (426)
                      .+.++.......+.+++.....        ...+++++.|+.+|+++|.++++..+||+|+.  +++++|+||..|+...
T Consensus        84 ~sie~qa~lV~kVk~~~~g~i~--------~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~  155 (502)
T PRK07107         84 QSIESEAAMVRRVKNYKAGFVV--------SDSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRIS  155 (502)
T ss_pred             CCHHHHHHHHHHHHHHhcCCcC--------CCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhcc
Confidence            3455544444555555532211        11478999999999999999999999999952  4799999999997311


Q ss_pred             HHHhccCCCCCChhhhcccchhhhHHHHHhhccccccCCCCCCCC--CCceEeCCCCCHHHHHHHHHhCCCCeeEEEecC
Q 014342          214 LRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCP--RPLVQAGPYDSLKEVALKILQNKVATVPIIHST  291 (426)
Q Consensus       214 l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~--~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d  291 (426)
                          ..         ....+++++                   |+  .+++++.+++++.+|+++|.++++..+||+|  
T Consensus       156 ----~~---------~~~~~V~dI-------------------Mt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD--  201 (502)
T PRK07107        156 ----RM---------SLDTKVKDF-------------------MTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVD--  201 (502)
T ss_pred             ----cc---------CCCCCHHHH-------------------hCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEc--
Confidence                00         001112222                   34  3788999999999999999999999999995  


Q ss_pred             CCCCCcceEEEEecHHhHHHHH
Q 014342          292 GPAGSCQEILYLASLSDILKCI  313 (426)
Q Consensus       292 ~~~g~~~~lvGiit~~dil~~l  313 (426)
                       +++   +++|+||.+||++..
T Consensus       202 -~~g---~LvGIIT~~Dilk~~  219 (502)
T PRK07107        202 -KNG---NLVYLVFRKDYDSHK  219 (502)
T ss_pred             -CCC---eEEEEEEhHHHHhcc
Confidence             235   699999999999853

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.04  E-value=6.6e-09  Score=85.29  Aligned_cols=111  Identities=19%  Similarity=0.321  Sum_probs=85.0

Q ss_pred             cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhc
Q 014342          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (426)
Q Consensus       166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~  245 (426)
                      +++++..+.++.+|++.|.+++...+||.|.  ++++|+++..|++..+..   ..  .  . ....++..+        
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~~---~~--~--~-~~~~~v~~i--------   63 (113)
T cd04587           2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG--NKLVGIFTSKDIALRVVA---QG--L--D-PESTLVERV--------   63 (113)
T ss_pred             CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHHHh---cC--C--C-cCcCCHHHh--------
Confidence            4677899999999999999999999999984  799999999998743321   10  0  0 000111111        


Q ss_pred             cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (426)
Q Consensus       246 ~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~  311 (426)
                                 |..++.++.+++++.++++.|.+++.+++||+++   ++   +++|++|..|++.
T Consensus        64 -----------~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~---~~---~~~Gvvs~~dl~~  112 (113)
T cd04587          64 -----------MTPNPVCATSDTPVLEALHLMVQGKFRHLPVVDK---SG---QVVGLLDVTKLTH  112 (113)
T ss_pred             -----------cCCCCeEEcCCCCHHHHHHHHHHcCCCcccEECC---CC---CEEEEEEHHHhcc
Confidence                       3456778999999999999999999999999952   35   6999999999864

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.04  E-value=5.9e-09  Score=84.90  Aligned_cols=106  Identities=13%  Similarity=0.275  Sum_probs=84.5

Q ss_pred             cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhc
Q 014342          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (426)
Q Consensus       166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~  245 (426)
                      .+++++++.++.+|++.|.++++..+||+|+ .++++|+++..|+.....   . .          ..+..+        
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~~G~v~~~dl~~~~~---~-~----------~~v~~~--------   59 (109)
T cd04583           3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDK-DNKLLGIVSLESLEQAYK---E-A----------KSLEDI--------   59 (109)
T ss_pred             CCEEECCCCCHHHHHHHHHHCCCceEEEEcC-CCcEEEEEEHHHHHHHhh---c-C----------CcHhHh--------
Confidence            4567899999999999999999999999986 479999999999865321   0 0          011111        


Q ss_pred             cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (426)
Q Consensus       246 ~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~  311 (426)
                                 |...+.++.+++++.+++..|.+.+.+++||++   ++|   +++|++|..++++
T Consensus        60 -----------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~---~~g---~~~Gvit~~~l~~  108 (109)
T cd04583          60 -----------MLEDVFTVQPDASLRDVLGLVLKRGPKYVPVVD---EDG---KLVGLITRSSLVD  108 (109)
T ss_pred             -----------hcCCceEECCCCcHHHHHHHHHHcCCceeeEEC---CCC---eEEEEEehHHhhc
Confidence                       245678899999999999999999999999995   235   6999999999874

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>COG0517 FOG: CBS domain [General function prediction only]

Probab=99.03  E-value=6.4e-09  Score=85.85  Aligned_cols=110  Identities=25%  Similarity=0.485  Sum_probs=88.3

Q ss_pred             CcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhh
Q 014342          165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL  244 (426)
Q Consensus       165 ~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~  244 (426)
                      ..++++.++.++.+|+.+|.++++.++||.+.  .+++|++|..|++..+........          .       ... 
T Consensus         7 ~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~--~~l~Giit~~di~~~~~~~~~~~~----------~-------v~~-   66 (117)
T COG0517           7 KDVITVKPDTSVRDALLLMSENGVSAVPVVDD--GKLVGIITERDILRALAAGGKRLL----------P-------VKE-   66 (117)
T ss_pred             CCCEEECCCCcHHHHHHHHHHcCCCEEEEeeC--CEEEEEEEHHHHHHHHhccCCccc----------c-------HHH-
Confidence            57889999999999999999999999999985  379999999999877653221100          0       111 


Q ss_pred             ccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHh-CCCCeeEEEecCCCCCCcceEEEEecHHhHH
Q 014342          245 NLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQ-NKVATVPIIHSTGPAGSCQEILYLASLSDIL  310 (426)
Q Consensus       245 ~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~-~~v~~lpVvd~d~~~g~~~~lvGiit~~dil  310 (426)
                                 .|+.+++++.+++++.++.+.|.+ ++++++||+++  +.+   +++|++|..|++
T Consensus        67 -----------v~~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~--~~~---~lvGivt~~di~  117 (117)
T COG0517          67 -----------VMTKPVVTVDPDTPLEEALELMVERHKIRRLPVVDD--DGG---KLVGIITLSDIL  117 (117)
T ss_pred             -----------hccCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEEC--CCC---eEEEEEEHHHcC
Confidence                       246688999999999999999999 79999999963  223   599999999873

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=99.03  E-value=3.8e-09  Score=86.79  Aligned_cols=111  Identities=20%  Similarity=0.311  Sum_probs=85.7

Q ss_pred             cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhc
Q 014342          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (426)
Q Consensus       166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~  245 (426)
                      ++.++.++.++.+|.+.|.+.+...+||+|. .++++|+++..|+...+.....         ....++..+        
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~~G~v~~~~i~~~~~~~~~---------~~~~~v~~~--------   64 (114)
T cd04604           3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDE-DGRLVGIFTDGDLRRALEKGLD---------ILTLPVADV--------   64 (114)
T ss_pred             cccccCCCCcHHHHHHHHHhcCccEEEEEcC-CCCEEEEechHHHHHHHhccCc---------cccCCHHHh--------
Confidence            3556788999999999999999999999986 4799999999998776542110         000111211        


Q ss_pred             cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (426)
Q Consensus       246 ~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~  311 (426)
                                 |..+..++.+++++.++++.|.+++.+.+||+++   ++   +++|++|..||++
T Consensus        65 -----------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~---~~---~~iG~it~~di~~  113 (114)
T cd04604          65 -----------MTRNPKTIDPDALAAEALELMEENKITALPVVDD---NG---RPVGVLHIHDLLR  113 (114)
T ss_pred             -----------hccCCeEECCCCcHHHHHHHHHHcCCCEEEEECC---CC---CEEEEEEHHHhhc
Confidence                       2455678999999999999999999999999952   35   6999999999875

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.03  E-value=6.9e-09  Score=85.10  Aligned_cols=110  Identities=20%  Similarity=0.323  Sum_probs=86.0

Q ss_pred             cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhc
Q 014342          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (426)
Q Consensus       166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~  245 (426)
                      ++.+++.+.++.+|.+.|.+++...+||.|++ ++++|++|..|++..+.....    .      ...+..         
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~~l~~~~~~~~~----~------~~~v~~---------   61 (112)
T cd04624           2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPD-ERPIGIVTERDIVRAVAAGID----L------DTPVSE---------   61 (112)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCCEEEEECCC-CCEEEEeeHHHHHHHHhccCC----C------ccCHHH---------
Confidence            45678999999999999999999999999864 799999999998765432110    0      001111         


Q ss_pred             cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (426)
Q Consensus       246 ~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~  311 (426)
                                .|..++.++.+++++.++++.|.+++...+||+++   +|   +++|++|..|+++
T Consensus        62 ----------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~---~g---~~~Gilt~~dl~~  111 (112)
T cd04624          62 ----------IMTRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDK---GG---ELVGVISIRDLVR  111 (112)
T ss_pred             ----------hccCCCEEECCCCcHHHHHHHHHHcCccEEEEEcC---CC---cEEEEEEHHHhcc
Confidence                      13456788999999999999999999999999952   35   6999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=99.03  E-value=2.7e-09  Score=91.45  Aligned_cols=113  Identities=19%  Similarity=0.182  Sum_probs=78.5

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCC-ccccc---ccccccc
Q 014342          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSS-LPILQ---QPVSSIQ  335 (426)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~-~~~~~---~~v~~l~  335 (426)
                      .+.++.+++++.+|++.|.+++++++||+|   +.|   +++|++|..|+++++.......... ...++   ..+.+++
T Consensus         2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD---~~g---~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~   75 (133)
T cd04592           2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVD---SDD---FLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVC   75 (133)
T ss_pred             CceEECCCCCHHHHHHHHHHcCCCEEEEEC---CCC---eEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHh
Confidence            357899999999999999999999999995   235   6999999999999876432110000 00000   0111122


Q ss_pred             ccccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCC
Q 014342          336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN  381 (426)
Q Consensus       336 i~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~  381 (426)
                      ....   +.+.|.++++++++++++.+|+++|.+++++++||+|++
T Consensus        76 ~~~~---~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~  118 (133)
T cd04592          76 TKGI---SYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRG  118 (133)
T ss_pred             hhhh---hhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCC
Confidence            1000   001123578899999999999999999999999999864

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.03  E-value=7.5e-09  Score=84.90  Aligned_cols=109  Identities=21%  Similarity=0.350  Sum_probs=82.9

Q ss_pred             EEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhcc
Q 014342          167 VTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNL  246 (426)
Q Consensus       167 vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~  246 (426)
                      +.++.++.++.+|.+.|.+++...+||.+ + ++++|++|..|+...+.....        .....++..+         
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~~-~-~~~~G~v~~~dl~~~~~~~~~--------~~~~~~v~~~---------   63 (112)
T cd04625           3 IYTVAPETLLSEAVATMAEQDLGSLVVME-R-GELVGLLTFREVLQAMAQHGA--------GVLDTTVRAI---------   63 (112)
T ss_pred             cEEECCCCcHHHHHHHHHHcCCCeEEEee-C-CEEEEEEEHHHHHHHHHhcCC--------chhcCCHHHH---------
Confidence            56788999999999999988887777665 3 799999999998765532100        0000111211         


Q ss_pred             ccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342          247 KRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (426)
Q Consensus       247 ~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~  311 (426)
                                |..++.++.+++++.+|++.|.+++..++||++    ++   +++|++|.+|+++
T Consensus        64 ----------~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~----~~---~~~Gvvt~~dl~~  111 (112)
T cd04625          64 ----------MNPEPIVASPDDSIDEVRRLMVERHLRYLPVLD----GG---TLLGVISFHDVAK  111 (112)
T ss_pred             ----------hCCCCeEECCCCCHHHHHHHHHHcCCCeeeEEE----CC---EEEEEEEHHHhhc
Confidence                      245567899999999999999999999999995    25   7999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=99.02  E-value=2.1e-08  Score=103.13  Aligned_cols=122  Identities=12%  Similarity=0.128  Sum_probs=96.5

Q ss_pred             HHhccccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhh
Q 014342          150 SFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEEL  229 (426)
Q Consensus       150 ~~l~~~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l  229 (426)
                      +.+...+.+++|-+  .++++.++.++.+|+++|.++++..+||+|.  ++++|+||.+|+...     .   .      
T Consensus        83 e~v~~VKv~eim~~--~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~--gklvGIVT~rDL~~~-----~---~------  144 (475)
T TIGR01303        83 QTVAFVKSRDLVLD--TPITLAPHDTVSDAMALIHKRAHGAAVVILE--DRPVGLVTDSDLLGV-----D---R------  144 (475)
T ss_pred             HHHhhcchhhcccc--CCeEECCCCCHHHHHHHHHhcCCeEEEEEEC--CEEEEEEEHHHhhcC-----C---C------
Confidence            44556667777755  5688999999999999999999999999984  589999999996210     0   0      


Q ss_pred             cccchhhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhH
Q 014342          230 ETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDI  309 (426)
Q Consensus       230 ~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~di  309 (426)
                      . ..+.+                   .|+.+++++.+++++.+|+++|.+++++.+||+|   +++   +++|+||++||
T Consensus       145 ~-~~V~d-------------------IMt~~litv~~~~sL~eAl~lM~~~~i~~LPVVD---~~g---~LvGIIT~~DL  198 (475)
T TIGR01303       145 F-TQVRD-------------------IMSTDLVTAPADTEPRKAFDLLEHAPRDVAPLVD---ADG---TLAGILTRTGA  198 (475)
T ss_pred             C-CCHHH-------------------HccCCceEeCCCCcHHHHHHHHHHcCCCEEEEEc---CCC---eEEEEEEHHHH
Confidence            0 01121                   1467889999999999999999999999999995   235   79999999999


Q ss_pred             HHHHHh
Q 014342          310 LKCICR  315 (426)
Q Consensus       310 l~~l~~  315 (426)
                      ++....
T Consensus       199 l~~~~~  204 (475)
T TIGR01303       199 LRATIY  204 (475)
T ss_pred             HHHHhC
Confidence            987553

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.02  E-value=7.1e-09  Score=86.18  Aligned_cols=119  Identities=18%  Similarity=0.367  Sum_probs=86.6

Q ss_pred             cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhc
Q 014342          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (426)
Q Consensus       166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~  245 (426)
                      ++.+++.+.++.+|++.|.+++...+||+|. +++++|+++..|+......................++..       + 
T Consensus         2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~-~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~-------~-   72 (121)
T cd04584           2 DVVTITPTTTIAEALELMREHKIRHLPVVDE-EGRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKE-------I-   72 (121)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCcccEECC-CCcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHH-------H-
Confidence            4678889999999999999999999999996 479999999999876543221100000000000011111       1 


Q ss_pred             cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (426)
Q Consensus       246 ~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~  311 (426)
                                 |..+++++.+++++.++++.|.+.+.+.+||++   . +   +++|++|..||++
T Consensus        73 -----------~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~---~-~---~~~Gvv~~~di~~  120 (121)
T cd04584          73 -----------MTKDVITVHPLDTVEEAALLMREHRIGCLPVVE---D-G---RLVGIITETDLLR  120 (121)
T ss_pred             -----------hhCCCeEECCCCcHHHHHHHHHHcCCCeEEEee---C-C---EEEEEEEHHHhhc
Confidence                       245678899999999999999999999999995   2 5   7999999999875

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.01  E-value=1.1e-08  Score=83.97  Aligned_cols=111  Identities=19%  Similarity=0.386  Sum_probs=84.3

Q ss_pred             cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhc
Q 014342          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (426)
Q Consensus       166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~  245 (426)
                      ++++++.+.++.+|++.|.+++...+||+|+  ++++|+++..|++..+.  .....      .....+..+        
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~i~~~~l~~~~~--~~~~~------~~~~~~~~~--------   63 (113)
T cd04622           2 DVVTVSPDDTIREAARLMREHDVGALPVCEN--DRLVGIVTDRDIVVRAV--AEGRD------PDTTTVGDV--------   63 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC--CEEEEEEEhHHHHHHHh--hccCC------cccCCHHHh--------
Confidence            4678899999999999999999999999985  79999999999752211  01000      000011111        


Q ss_pred             cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (426)
Q Consensus       246 ~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~  311 (426)
                                 |...+.++.+++++.++++.|.+++.+++||+++   .+   +++|++|..|+++
T Consensus        64 -----------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~---~~---~~~G~it~~di~~  112 (113)
T cd04622          64 -----------MTRGVVTVTEDDDVDEAARLMREHQVRRLPVVDD---DG---RLVGIVSLGDLAR  112 (113)
T ss_pred             -----------ccCCccEECCCCCHHHHHHHHHHcCCCeeeEECC---CC---cEEEEEEHHHhhc
Confidence                       2456678999999999999999999999999952   35   6999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=99.01  E-value=2.6e-08  Score=103.32  Aligned_cols=111  Identities=14%  Similarity=0.195  Sum_probs=89.1

Q ss_pred             CcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCC--CCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHH
Q 014342          165 GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDF--KGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKL  242 (426)
Q Consensus       165 ~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~--~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~  242 (426)
                      .+++++.++.|+.+|.++|.++++..+||+|+.  .++++|+||..|+....    .          ...++.++     
T Consensus       108 ~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~----~----------~~~~V~eI-----  168 (505)
T PLN02274        108 SDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVN----D----------RETKLSEV-----  168 (505)
T ss_pred             CCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhcc----c----------cCCcHHHH-----
Confidence            367889999999999999999999999999863  37999999999974211    0          00112221     


Q ss_pred             hhccccccCCCCCCCCCC--ceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHH
Q 014342          243 QLNLKRQMDGNGRPCPRP--LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCIC  314 (426)
Q Consensus       243 ~~~~~~~~~g~~~~~~~~--~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~  314 (426)
                                    |++.  ++++.+++++.+|++.|.++++..+||+|   +.+   +++|+||++||++.+.
T Consensus       169 --------------Mt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD---~~g---~LvGvITr~DIlk~~~  222 (505)
T PLN02274        169 --------------MTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVN---EDG---ELVDLVTRTDVKRVKG  222 (505)
T ss_pred             --------------hccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEc---CCC---eEEEEEEHHHHHHHhh
Confidence                          2433  78999999999999999999999999995   235   6999999999999865

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.00  E-value=9.3e-09  Score=83.22  Aligned_cols=102  Identities=18%  Similarity=0.298  Sum_probs=82.4

Q ss_pred             cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhc
Q 014342          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (426)
Q Consensus       166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~  245 (426)
                      ++++++.+.++.+|++.|.+++...+||+|+  ++++|+++..|+....    .       .    ..+..+        
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~Giv~~~~l~~~~----~-------~----~~~~~~--------   56 (105)
T cd04599           2 DPITIDPLDSVGRAARLMEKHRIGGLPVVED--GKLVGIITSRDVRRAH----P-------N----RLVADA--------   56 (105)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEEEC--CEEEEEEehHHhhccc----c-------c----CCHHHH--------
Confidence            4567899999999999999999999999983  7999999999976421    0       0    011111        


Q ss_pred             cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHH
Q 014342          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDIL  310 (426)
Q Consensus       246 ~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil  310 (426)
                                 |..++.++.+++++.++++.|.+++...+||++   + +   +++|++|..+++
T Consensus        57 -----------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~---~-~---~~~G~it~~~l~  103 (105)
T cd04599          57 -----------MTREVVTISPEASLLEAKRLMEEKKIERLPVLR---E-R---KLVGIITKGTIA  103 (105)
T ss_pred             -----------ccCCCEEECCCCCHHHHHHHHHHcCCCEeeEEE---C-C---EEEEEEEHHHhc
Confidence                       245678899999999999999999999999995   2 5   799999999986

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=99.00  E-value=4e-09  Score=108.96  Aligned_cols=113  Identities=14%  Similarity=0.249  Sum_probs=89.0

Q ss_pred             CCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccccc
Q 014342          257 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL  336 (426)
Q Consensus       257 ~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i  336 (426)
                      |.+++.++.+++++.++++.|.+++++++||+|+   ++   +++|+||..|+++.+.....       ....++.+++ 
T Consensus       341 m~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~---~~---~~~Givt~~dl~~~~~~~~~-------~~~~~v~~im-  406 (454)
T TIGR01137       341 HLPAPVTVHPTETVGDAIEILREYGFDQLPVVTE---AG---KVLGSVTLRELLSALFAGKA-------NPDDAVSKVM-  406 (454)
T ss_pred             CcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC---CC---eEEEEEEHHHHHHHHhccCC-------CcCCCHHHhc-
Confidence            5678899999999999999999999999999952   35   69999999999986653211       1123444444 


Q ss_pred             cccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHH
Q 014342          337 GTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA  397 (426)
Q Consensus       337 ~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~  397 (426)
                                 .+++.++.+++++.+++++|.+++   .|||+++|+++|+||++||++.+
T Consensus       407 -----------~~~~~~v~~~~~l~~a~~~~~~~~---~~vV~~~g~liGvvt~~dll~~l  453 (454)
T TIGR01137       407 -----------SKKFIQIGEGEKLSDLSKFLEKNS---SAIVTEEGKPIGVVTKIDLLSFL  453 (454)
T ss_pred             -----------CCCCeEECCcCcHHHHHHHHHHCC---eeEEEECCEEEEEEEHHHHHHhh
Confidence                       246778999999999999998764   35565679999999999999864

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.00  E-value=9e-09  Score=83.84  Aligned_cols=109  Identities=22%  Similarity=0.355  Sum_probs=82.0

Q ss_pred             cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhc
Q 014342          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (426)
Q Consensus       166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~  245 (426)
                      .+++++.+.++.+|.+.|.++++..+||+|.  ++++|++|..|+...+......        . ...+..         
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~~~~~~--------~-~~~~~~---------   61 (110)
T cd04609           2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD--GRVVGSIDESDLLDALIEGKAK--------F-SLPVRE---------   61 (110)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCceeeEeeC--CeeEEEEeHHHHHHHHhccccc--------c-CcCHHH---------
Confidence            4678899999999999999999999999995  7899999999988755321100        0 001111         


Q ss_pred             cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHH
Q 014342          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (426)
Q Consensus       246 ~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~  312 (426)
                                .+..+++++.+++++.++..+|.+ . +.+||++   +++   +++|++|.+||++|
T Consensus        62 ----------~~~~~~~~v~~~~~l~~~~~~~~~-~-~~~~vv~---~~~---~~~Gvvt~~di~~~  110 (110)
T cd04609          62 ----------VMGEPLPTVDPDAPIEELSELLDR-G-NVAVVVD---EGG---KFVGIITRADLLKY  110 (110)
T ss_pred             ----------HhcCCCceeCCCCcHHHHHHHHHh-C-CceeEEe---cCC---eEEEEEeHHHhhcC
Confidence                      124567889999999999998887 3 3478885   235   79999999999864

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=98.99  E-value=3.3e-09  Score=101.30  Aligned_cols=110  Identities=15%  Similarity=0.274  Sum_probs=92.8

Q ss_pred             CCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccccccc
Q 014342          259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  338 (426)
Q Consensus       259 ~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~  338 (426)
                      ....++.+++++.+..++-.+.|.+|+||+|.   ..   +++|++|.+|++..             .-+.++..+|   
T Consensus       198 ~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~---~~---kvvGvVt~rDv~~~-------------~~~t~ieKVM---  255 (432)
T COG4109         198 EDTSYLRETDTVEDWLDLVEKTGHSRFPVVNR---SM---KVVGVVTMRDVLDK-------------KPSTTIEKVM---  255 (432)
T ss_pred             ccceeccccccHHHHHHHHHHcCCCccceecc---cc---eEEEEEEehhhhcC-------------CCCccHHHHh---
Confidence            45667889999999999999999999999962   33   69999999998752             1134444444   


Q ss_pred             cccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHhc
Q 014342          339 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  399 (426)
Q Consensus       339 ~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~~  399 (426)
                               .++++++.+.+++..+.++|.=.++.-+||+|++.+++|+|||+|+++.+..
T Consensus       256 ---------tknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq~  307 (432)
T COG4109         256 ---------TKNPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQM  307 (432)
T ss_pred             ---------ccCCeeecccchHHHHHHHHHhccceeeeEEcCCceEEEEEEHHHHHHHHHH
Confidence                     3678899999999999999999999999999999999999999999986653

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=98.97  E-value=1.1e-08  Score=84.55  Aligned_cols=107  Identities=20%  Similarity=0.312  Sum_probs=81.2

Q ss_pred             cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCC--CCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHh
Q 014342          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDF--KGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQ  243 (426)
Q Consensus       166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~--~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~  243 (426)
                      .++++..+.++.+|.+.|.++++..+||+|+.  .++++|+++..|+....    ..          ...++.+      
T Consensus         3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~----~~----------~~~v~~~------   62 (114)
T cd04602           3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLT----DS----------ETPLSEV------   62 (114)
T ss_pred             CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhh----cc----------CCCHHHh------
Confidence            45678899999999999999999999999952  47999999999975211    00          0011111      


Q ss_pred             hccccccCCCCCCCCCCceEeC--CCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342          244 LNLKRQMDGNGRPCPRPLVQAG--PYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (426)
Q Consensus       244 ~~~~~~~~g~~~~~~~~~v~v~--~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~  311 (426)
                                   |.....++.  +++++.++++.|.+++.+.+||++   +++   +++|+||.+||++
T Consensus        63 -------------~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~---~~~---~~~Gvit~~di~~  113 (114)
T cd04602          63 -------------MTPREVLVVAPTGITLEEANEILRESKKGKLPIVN---DDG---ELVALVTRSDLKK  113 (114)
T ss_pred             -------------cCCCceEEECCCCCCHHHHHHHHHhcCCCceeEEC---CCC---eEEEEEEHHHhhc
Confidence                         233444554  499999999999999999999995   235   7999999999875

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=98.97  E-value=5.5e-08  Score=100.84  Aligned_cols=109  Identities=21%  Similarity=0.310  Sum_probs=87.7

Q ss_pred             cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCC--CCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHh
Q 014342          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDF--KGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQ  243 (426)
Q Consensus       166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~--~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~  243 (426)
                      .+++++++.++.+|.++|.++++..+||+|++  +++++|+||..|+.. .    ..         ...++.++      
T Consensus       105 dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~-~----~~---------~~~~V~di------  164 (495)
T PTZ00314        105 DPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDF-V----KD---------KSTPVSEV------  164 (495)
T ss_pred             CCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhh-c----cc---------CCCCHHHh------
Confidence            56789999999999999999999999999864  379999999999741 1    00         01112221      


Q ss_pred             hccccccCCCCCCCCC--CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHH
Q 014342          244 LNLKRQMDGNGRPCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCI  313 (426)
Q Consensus       244 ~~~~~~~~g~~~~~~~--~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l  313 (426)
                                   |++  +++++.+++++.+|+++|.++++..+||+|+   ++   +++|+||.+||++..
T Consensus       165 -------------Mt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~---~g---~liGIIT~~DIl~~~  217 (495)
T PTZ00314        165 -------------MTPREKLVVGNTPISLEEANEVLRESRKGKLPIVND---NG---ELVALVSRSDLKKNR  217 (495)
T ss_pred             -------------hCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcC---CC---cEEEEEEehHhhhcc
Confidence                         344  7889999999999999999999999999952   35   699999999999864

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=98.97  E-value=7.9e-09  Score=83.96  Aligned_cols=100  Identities=18%  Similarity=0.229  Sum_probs=81.2

Q ss_pred             EEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhccc
Q 014342          168 TALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLK  247 (426)
Q Consensus       168 i~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~  247 (426)
                      +++..+.++.+|.+.|.+++...+||+|.  ++++|+++..|+....    .       .     ++...          
T Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~----~-------~-----~~~~~----------   55 (104)
T cd04594           4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY--NKFLGAVYLKDIENAT----Y-------G-----DVVDY----------   55 (104)
T ss_pred             eEECCCCCHHHHHHHHHHcCCcEEEEEEC--CEEEEEEEHHHHhhhc----c-------c-----chhhh----------
Confidence            67789999999999999999999999994  7999999999975311    0       0     01111          


Q ss_pred             cccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342          248 RQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (426)
Q Consensus       248 ~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~  311 (426)
                               |.....++.++.++.+++..|.+++.+.+||++    +|   +++|++|..|++.
T Consensus        56 ---------~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~----~~---~~iGvit~~dl~~  103 (104)
T cd04594          56 ---------IVRGIPYVRLTSTAEEAWEVMMKNKTRWCPVVD----DG---KFKGIVTLDSILD  103 (104)
T ss_pred             ---------hhcCCcEEcCCCCHHHHHHHHHHcCcceEEEEE----CC---EEEEEEEHHHhhc
Confidence                     234567899999999999999999999999994    25   7999999999864

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>PF00571 CBS: CBS domain CBS domain web page

Probab=98.97  E-value=1.2e-09  Score=78.86  Aligned_cols=51  Identities=31%  Similarity=0.508  Sum_probs=47.9

Q ss_pred             CCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHh
Q 014342          348 GRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  398 (426)
Q Consensus       348 ~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~  398 (426)
                      .++++++++++++.+|++.|.+++++++||+|++|+++|+||++||++++.
T Consensus         6 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l~   56 (57)
T PF00571_consen    6 TPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKALL   56 (57)
T ss_dssp             BSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHHH
T ss_pred             cCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhhh
Confidence            468899999999999999999999999999999999999999999998764

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>PRK11573 hypothetical protein; Provisional

Probab=98.97  E-value=2.2e-08  Score=101.75  Aligned_cols=131  Identities=18%  Similarity=0.221  Sum_probs=106.2

Q ss_pred             hccccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcc
Q 014342          152 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELET  231 (426)
Q Consensus       152 l~~~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~  231 (426)
                      |++.++.|+|..-.+++.++.+.++.++++++.+++.+.+||++.+.++++|++..+|++..+..   . ...       
T Consensus       184 l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~---~-~~~-------  252 (413)
T PRK11573        184 LEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTE---K-KEF-------  252 (413)
T ss_pred             cCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhc---c-CcC-------
Confidence            56889999999999999999999999999999999999999998776899999999998854321   0 000       


Q ss_pred             cchhhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342          232 HTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (426)
Q Consensus       232 ~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~  311 (426)
                       ....+.    .             ..+++..+.++.++.++++.|.+++.|-..|+|   +-|   ...|+||..||+.
T Consensus       253 -~~~~l~----~-------------~~r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvD---EyG---~~~GiVTleDilE  308 (413)
T PRK11573        253 -TKENML----R-------------AADEIYFVPEGTPLSTQLVKFQRNKKKVGLVVD---EYG---DIQGLVTVEDILE  308 (413)
T ss_pred             -CHHHHH----h-------------hccCCeEeCCCCcHHHHHHHHHhcCCeEEEEEe---cCC---CeEEEeeHHHHHH
Confidence             011111    1             135678899999999999999999999999996   334   4999999999999


Q ss_pred             HHHhhc
Q 014342          312 CICRHF  317 (426)
Q Consensus       312 ~l~~~~  317 (426)
                      .+....
T Consensus       309 eivGei  314 (413)
T PRK11573        309 EIVGDF  314 (413)
T ss_pred             HHhCCC
Confidence            988554

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.97  E-value=1.2e-08  Score=82.98  Aligned_cols=103  Identities=22%  Similarity=0.400  Sum_probs=82.7

Q ss_pred             ceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccccccccc
Q 014342          261 LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWV  340 (426)
Q Consensus       261 ~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~  340 (426)
                      +.++.++.++.+++..|.+.+...+||+++   ++   +++|+++..++++..    .         ..++.+++     
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~---~~~g~v~~~~l~~~~----~---------~~~~~~~~-----   58 (106)
T cd04638           3 VVYVTLPGTRDDVLELLKEYKVSGVPVVKK---SG---ELVGIITRKDLLRNP----E---------EEQLALLM-----   58 (106)
T ss_pred             cEEECCCCCHHHHHHHHHHcCCCeEEEEcC---CC---cEEEEEEHHHHHhcc----c---------cchHHHHh-----
Confidence            567889999999999999989999999952   25   699999999987521    0         11122222     


Q ss_pred             cccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342          341 PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (426)
Q Consensus       341 ~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~  395 (426)
                             ..++.++.+++++.++++.|.+++.+.+||+|+ |+++|+||..|+++
T Consensus        59 -------~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~G~it~~d~~~  105 (106)
T cd04638          59 -------TRDPPTVSPDDDVKEAAKLMVENNIRRVPVVDD-GKLVGIVTVADIVR  105 (106)
T ss_pred             -------cCCCceECCCCCHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence                   136678999999999999999999999999985 79999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=98.96  E-value=6.9e-09  Score=84.92  Aligned_cols=102  Identities=19%  Similarity=0.372  Sum_probs=79.5

Q ss_pred             EcCCccHHHHHHHHHHCC-----CCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhh
Q 014342          170 LDVNLAVKQAFHVLYEQG-----LPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL  244 (426)
Q Consensus       170 l~~~~sv~~A~~~l~~~~-----i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~  244 (426)
                      ++++.|+.+|++.|.+++     +..+||+|+ .++++|++|..|++..     .  .        ..++..+       
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~-~~~~~G~v~~~~l~~~-----~--~--------~~~v~~~-------   58 (109)
T cd04606           2 VREDWTVGEALEYLRRNADDPETIYYIYVVDE-EGRLLGVVSLRDLLLA-----D--P--------DTPVSDI-------   58 (109)
T ss_pred             ccccCcHHHHHHHHHhccCcccceeEEEEECC-CCCEEEEEEHHHHhcC-----C--C--------cchHHHH-------
Confidence            567889999999999877     578999985 4789999999887531     0  0        0011111       


Q ss_pred             ccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHH
Q 014342          245 NLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (426)
Q Consensus       245 ~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~  312 (426)
                                  +..++..+.+++++.++++.|.+++.+.+||+++   ++   +++|++|..|+++.
T Consensus        59 ------------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~---~~---~~~Gvit~~dll~~  108 (109)
T cd04606          59 ------------MDTDVISVSADDDQEEVARLFEKYDLLALPVVDE---EG---RLVGIITVDDVIDV  108 (109)
T ss_pred             ------------hCCCCeEEcCCCCHHHHHHHHHHcCCceeeeECC---CC---cEEEEEEhHHhhhh
Confidence                        2456788999999999999999999999999952   35   69999999999874

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=98.96  E-value=1.8e-08  Score=81.80  Aligned_cols=104  Identities=20%  Similarity=0.392  Sum_probs=83.1

Q ss_pred             cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhc
Q 014342          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (426)
Q Consensus       166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~  245 (426)
                      +++++..+.++.+|++.|.+++...+||.|.  ++++|+++..|++..     .  .        ...+..+        
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~--~~~~g~v~~~~l~~~-----~--~--------~~~~~~~--------   57 (107)
T cd04610           3 DVITVSPDNTVKDVIKLIKETGHDGFPVVDN--GKVVGIVSARDLLGK-----D--P--------DETVEEI--------   57 (107)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCeeeEeEC--CEEEEEEEHHHhhcc-----C--c--------cccHHHh--------
Confidence            5678899999999999999999889999984  799999999997531     0  0        0011111        


Q ss_pred             cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (426)
Q Consensus       246 ~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~  311 (426)
                                 |...+.++.+++++.++++.|.+++.+++||++   ++|   +++|+++..++++
T Consensus        58 -----------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~---~~g---~~~Gvi~~~di~~  106 (107)
T cd04610          58 -----------MSKDLVVAVPEMDIMDAARVMFRTGISKLPVVD---ENN---NLVGIITNTDVIR  106 (107)
T ss_pred             -----------CCCCCeEECCCCCHHHHHHHHHHhCCCeEeEEC---CCC---eEEEEEEHHHhhc
Confidence                       245567899999999999999999999999995   235   7999999999875

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.96  E-value=1.6e-08  Score=87.44  Aligned_cols=136  Identities=19%  Similarity=0.345  Sum_probs=89.0

Q ss_pred             cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCC--hhhhccc---chhhhHHH
Q 014342          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLT--EEELETH---TISAWKVG  240 (426)
Q Consensus       166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~--~~~l~~~---~i~~~~~~  240 (426)
                      ++++++.+.++.+|++.|.++++.++||+|+  ++++|++|..|+...+...........  .......   .+..|.+.
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (143)
T cd04634           2 NPITCNADDTISDAARLLRENKISGAPVLDG--GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEET   79 (143)
T ss_pred             CcEEecCCCCHHHHHHHHHHcCCCcceEeEC--CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHHH
Confidence            4678899999999999999999999999995  799999999998876643221000000  0000000   00111111


Q ss_pred             HHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342          241 KLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (426)
Q Consensus       241 ~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~  311 (426)
                      .......... -....|..++.++.+++++.+++..|.+++.+++||++   . +   +++|++|..|+++
T Consensus        80 ~~~~~~~~~~-~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~---~-~---~~~Gvvt~~dl~~  142 (143)
T cd04634          80 KRALTDAGKM-KVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVE---D-G---RLVGIVTRGDIIE  142 (143)
T ss_pred             HHHHHHHhcC-CHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEE---C-C---EEEEEEEHHHhhc
Confidence            1000000000 00012456788999999999999999999999999995   2 5   7999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.95  E-value=2.4e-08  Score=80.83  Aligned_cols=111  Identities=29%  Similarity=0.511  Sum_probs=86.6

Q ss_pred             cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhc
Q 014342          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (426)
Q Consensus       166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~  245 (426)
                      ++.+++.+.++.+|.+.|.+++...+||+|++ ++++|+++..|++..+......  ..   .    .+.       .  
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~G~v~~~~l~~~~~~~~~~--~~---~----~~~-------~--   62 (113)
T cd02205           2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDD-GRLVGIVTERDLLRALAEGGLD--PL---V----TVG-------D--   62 (113)
T ss_pred             CceEecCCCCHHHHHHHHHhcCCceEEEECCC-CCEEEEEeHHHHHHHHHhccCC--cc---c----cHH-------H--
Confidence            46778999999999999999999999999964 7999999999987655422110  00   0    001       1  


Q ss_pred             cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (426)
Q Consensus       246 ~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~  311 (426)
                                .+..++..+.+++++.+++..|.+.+.+.+||+++   ++   +++|+++..|+++
T Consensus        63 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~---~~---~~~G~i~~~dl~~  112 (113)
T cd02205          63 ----------VMTRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDD---EG---RLVGIVTRSDILR  112 (113)
T ss_pred             ----------HhcCCceecCCCcCHHHHHHHHHHcCCCEEEEEcC---CC---cEEEEEEHHHhhc
Confidence                      12456778899999999999999999999999953   35   6999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=98.89  E-value=1.7e-08  Score=82.27  Aligned_cols=106  Identities=21%  Similarity=0.343  Sum_probs=80.8

Q ss_pred             cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhc
Q 014342          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (426)
Q Consensus       166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~  245 (426)
                      +.++++.+.++.+|.+.|.+++...+||+|. +++++|+++..|+....    .  .        ..++..+        
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~~G~v~~~~l~~~~----~--~--------~~~v~~~--------   59 (110)
T cd04601           3 DPITVSPDATVAEALELMAEYGISGLPVVDD-DGKLVGIVTNRDLRFET----D--L--------DKPVSEV--------   59 (110)
T ss_pred             CCeEeCCCCcHHHHHHHHHHcCCceEEEEcC-CCEEEEEEEhhHeeecc----c--C--------CCCHHHh--------
Confidence            4678899999999999999999999999985 47999999998864210    0  0        0011111        


Q ss_pred             cccccCCCCCCCCCCceEeCC-CCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342          246 LKRQMDGNGRPCPRPLVQAGP-YDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (426)
Q Consensus       246 ~~~~~~g~~~~~~~~~v~v~~-~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~  311 (426)
                                 |...+..+.+ ++++.++++.|.+++.+.+||+++   ++   +++|++|.+|+++
T Consensus        60 -----------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~---~~---~~~Gvi~~~dil~  109 (110)
T cd04601          60 -----------MTPENLLTTVEGTSLEEALELLHEHKIEKLPVVDD---EG---KLKGLITVKDIEK  109 (110)
T ss_pred             -----------cccCceEEecCCCCHHHHHHHHHHhCCCeeeEEcC---CC---CEEEEEEhhhhhc
Confidence                       2233445556 999999999999999999999952   35   6999999999875

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=98.89  E-value=3.8e-08  Score=81.59  Aligned_cols=113  Identities=16%  Similarity=0.192  Sum_probs=82.6

Q ss_pred             cEEEEcCCccHHHHHHHHHHCC-CCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhh
Q 014342          166 KVTALDVNLAVKQAFHVLYEQG-LPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL  244 (426)
Q Consensus       166 ~vi~l~~~~sv~~A~~~l~~~~-i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~  244 (426)
                      ++.++.++.++.+|++.|.+++ +..+||+|+  ++++|+++..|+...+.....      .......++..        
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~~l~~~~~~~~~------~~~~~~~~v~~--------   65 (119)
T cd04598           2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD--GRPVGLIMREALMELLSTPYG------RALYGKKPVSE--------   65 (119)
T ss_pred             CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC--CeeEEEEEHHHHHHHHhchhh------HHHHcCCcHHH--------
Confidence            3456788999999999999887 899999996  799999999998765432110      00001111111        


Q ss_pred             ccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCC---eeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342          245 NLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVA---TVPIIHSTGPAGSCQEILYLASLSDILK  311 (426)
Q Consensus       245 ~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~---~lpVvd~d~~~g~~~~lvGiit~~dil~  311 (426)
                                 .|..++.++.+++++.+++..|.+++..   ..||+++   .|   +++|+||..|+++
T Consensus        66 -----------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~---~~---~~~Gvvs~~di~~  118 (119)
T cd04598          66 -----------VMDPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTE---EG---RYLGIGTVKDLLR  118 (119)
T ss_pred             -----------hcCCCcEEecCCCCHHHHHHHHHcCCcccccccEEEee---CC---eEEEEEEHHHHhc
Confidence                       1356788899999999999999988764   4467752   35   7999999999874

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=98.87  E-value=1.9e-08  Score=103.94  Aligned_cols=130  Identities=18%  Similarity=0.270  Sum_probs=98.4

Q ss_pred             HHHHHHHHhccccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCC
Q 014342          144 SRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSN  223 (426)
Q Consensus       144 ~~~~~~~~l~~~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~  223 (426)
                      +.....++|...++.++|.+  +++++.++.++.+|++.|.++++..+||+|+ .++++|+||..|+...+.....   .
T Consensus       324 ~~~~~~~~l~~~~v~~im~~--~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~-~~~~~Givt~~dl~~~~~~~~~---~  397 (454)
T TIGR01137       324 EVLTVFDVLKNATVKDLHLP--APVTVHPTETVGDAIEILREYGFDQLPVVTE-AGKVLGSVTLRELLSALFAGKA---N  397 (454)
T ss_pred             ccccHHHHhccCCHHHhCcC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEcC-CCeEEEEEEHHHHHHHHhccCC---C
Confidence            33356677999999999965  6888999999999999999999999999985 4789999999998765432100   0


Q ss_pred             CChhhhcccchhhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEE
Q 014342          224 LTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYL  303 (426)
Q Consensus       224 ~~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGi  303 (426)
                            ...++..                   .|..++.++.+++++.+++..|.+++   .||+++   ++   +++|+
T Consensus       398 ------~~~~v~~-------------------im~~~~~~v~~~~~l~~a~~~~~~~~---~~vV~~---~g---~liGv  443 (454)
T TIGR01137       398 ------PDDAVSK-------------------VMSKKFIQIGEGEKLSDLSKFLEKNS---SAIVTE---EG---KPIGV  443 (454)
T ss_pred             ------cCCCHHH-------------------hcCCCCeEECCcCcHHHHHHHHHHCC---eeEEEE---CC---EEEEE
Confidence                  0001111                   13566788999999999999998753   355532   35   79999


Q ss_pred             ecHHhHHHHH
Q 014342          304 ASLSDILKCI  313 (426)
Q Consensus       304 it~~dil~~l  313 (426)
                      ||.+||++++
T Consensus       444 vt~~dll~~l  453 (454)
T TIGR01137       444 VTKIDLLSFL  453 (454)
T ss_pred             EEHHHHHHhh
Confidence            9999999875

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.80  E-value=1.1e-07  Score=77.12  Aligned_cols=104  Identities=21%  Similarity=0.394  Sum_probs=82.7

Q ss_pred             cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhc
Q 014342          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLN  245 (426)
Q Consensus       166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~  245 (426)
                      ++++++.+.++.+|+..|.+++...+||+|++ ++++|+++..|+...    ..       +    ..+...        
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~g~v~~~~l~~~----~~-------~----~~~~~~--------   57 (106)
T cd04638           2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKS-GELVGIITRKDLLRN----PE-------E----EQLALL--------   57 (106)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCC-CcEEEEEEHHHHHhc----cc-------c----chHHHH--------
Confidence            56788899999999999999999999999864 789999999997531    00       0    011111        


Q ss_pred             cccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342          246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (426)
Q Consensus       246 ~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~  311 (426)
                                 |..++.++.+++++.+++..|.+++.+.+||++    .+   +++|++|..++++
T Consensus        58 -----------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd----~~---~~~G~it~~d~~~  105 (106)
T cd04638          58 -----------MTRDPPTVSPDDDVKEAAKLMVENNIRRVPVVD----DG---KLVGIVTVADIVR  105 (106)
T ss_pred             -----------hcCCCceECCCCCHHHHHHHHHHcCCCEEEEEE----CC---EEEEEEEHHHhhc
Confidence                       245567889999999999999999999999995    24   6999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=98.80  E-value=4.5e-08  Score=93.90  Aligned_cols=114  Identities=14%  Similarity=0.129  Sum_probs=88.7

Q ss_pred             ccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccch
Q 014342          155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTI  234 (426)
Q Consensus       155 ~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i  234 (426)
                      .++.|+|... .+.++.++.++.+|++.|.+.++..+||+|+ +++++|++|..|+...+..  .  ..      ...++
T Consensus       155 ~~v~~im~~~-~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~-~g~~~Givt~~dl~~~~~~--~--~~------~~~~v  222 (268)
T TIGR00393       155 VKVKDLMQTT-DLPLIAPTTSFKDALLEMSEKRLGSAIVCDE-NNQLVGVFTDGDLRRALLG--G--GS------LKSEV  222 (268)
T ss_pred             hhHHHHhCCC-CCCcCCCCCcHHHHHHHHhhcCCcEEEEEeC-CCCEEEEEEcHHHHHHHhc--C--Cc------ccCcH
Confidence            5788888664 2778899999999999999999999999995 4799999999998764321  0  00      00011


Q ss_pred             hhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEec
Q 014342          235 SAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLAS  305 (426)
Q Consensus       235 ~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit  305 (426)
                      ++                   .|.++++++.+++++.+|++.|.+++++++||++   ++|   +++|+|+
T Consensus       223 ~~-------------------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd---~~g---~l~GvI~  268 (268)
T TIGR00393       223 RD-------------------FMTLGPKTFKLDALLLEALEFLERRKITSLVVVD---DHN---KVLGVLH  268 (268)
T ss_pred             HH-------------------hCCCCCeEECCCCcHHHHHHHHHHcCCcEEEEEC---CCC---eEEEEEC
Confidence            11                   1356788999999999999999999999999995   335   6999985

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=98.79  E-value=4.8e-08  Score=93.48  Aligned_cols=124  Identities=17%  Similarity=0.231  Sum_probs=102.4

Q ss_pred             ccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccch
Q 014342          155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTI  234 (426)
Q Consensus       155 ~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i  234 (426)
                      .++.|+|......-.+..++++.+-.++-.+.|....||+|. ..+++|++|.+|+++.-        +  ..     ++
T Consensus       188 ~~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~-~~kvvGvVt~rDv~~~~--------~--~t-----~i  251 (432)
T COG4109         188 ITVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNR-SMKVVGVVTMRDVLDKK--------P--ST-----TI  251 (432)
T ss_pred             eeHHHhccccccceeccccccHHHHHHHHHHcCCCccceecc-cceEEEEEEehhhhcCC--------C--Cc-----cH
Confidence            468889988888889999999999999999999999999996 46999999999976321        0  01     11


Q ss_pred             hhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHH
Q 014342          235 SAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCIC  314 (426)
Q Consensus       235 ~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~  314 (426)
                      ..                   .|++.++++.+.+++.-+...|.-.++.-+||+++   +.   +++|+||++|+++.+.
T Consensus       252 eK-------------------VMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~---n~---~llGiitR~dvlk~lq  306 (432)
T COG4109         252 EK-------------------VMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDS---NN---TLLGIITRQDVLKSLQ  306 (432)
T ss_pred             HH-------------------HhccCCeeecccchHHHHHHHHHhccceeeeEEcC---Cc---eEEEEEEHHHHHHHHH
Confidence            11                   36888899999999999999999999999999963   33   6999999999999987


Q ss_pred             hhccc
Q 014342          315 RHFKH  319 (426)
Q Consensus       315 ~~~~~  319 (426)
                      ...+.
T Consensus       307 ~~q~q  311 (432)
T COG4109         307 MIQRQ  311 (432)
T ss_pred             HhccC
Confidence            65443

>cd02688 E_set E or "early" set of sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies

Probab=98.76  E-value=3.4e-08  Score=76.71  Aligned_cols=72  Identities=32%  Similarity=0.496  Sum_probs=59.8

Q ss_pred             eEEEEEecC-CCceEEEEeccCCCCCCCCCCCCCCCCCeEEEEEecCC-ceEEEEEEEcCeeecCCCCCeeeCCCC
Q 014342           21 VPVRFIWPN-GGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPP-GHHQYKFYVDGEWRHDENQPHVSGNYG   94 (426)
Q Consensus        21 ~~v~f~~~~-~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~L~~-g~y~ykFiVDg~w~~d~~~p~~~d~~G   94 (426)
                      ..++|++.. .+++|.|++.|++|....+|.+.+  +|.|++.+++.+ |.|.|+|.|+|.|.+++.++...+...
T Consensus         4 ~~v~f~v~ap~a~~v~l~~~~~~~~~~~~~~~~~--~g~w~~~v~~~~~~~~~Y~~~v~~~~~~~~~~~~~~~~~~   77 (83)
T cd02688           4 KGVTFTVRGPKAQRVSLAGSFNGDTQLIPMTKVE--DGYWEVELPLPSPGKYQYKYVLDGGKGPDEGEPKADEGGS   77 (83)
T ss_pred             ccEEEEEECCCCCEEEEEEEECCCCCcccCEECC--CceEEEEEcCCCCCCeEEEEEEeCCCCCCCCChhhhcCCc
Confidence            468888766 479999999999976668998765  699999999998 999999999999999998865554433

These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=98.69  E-value=9.5e-08  Score=97.04  Aligned_cols=120  Identities=18%  Similarity=0.281  Sum_probs=98.2

Q ss_pred             cCCCCCCCCCCceEeCCCCCHHHHHHHHHh-----CCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCc
Q 014342          250 MDGNGRPCPRPLVQAGPYDSLKEVALKILQ-----NKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSL  324 (426)
Q Consensus       250 ~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~-----~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~  324 (426)
                      .+-.|..|+..++++.++.|+.+++..+.+     .....+.|+|   ..+   +++|+++.++++..            
T Consensus       131 e~taG~~Mt~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD---~~~---~L~Gvvsl~~Ll~a------------  192 (451)
T COG2239         131 EDTAGRIMTTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVD---EKG---KLLGVVSLRDLLTA------------  192 (451)
T ss_pred             hhhhhccceeeeEEeccCcCHHHHHHHHHHhcccccccceEEEEC---Ccc---ceEEEeeHHHHhcC------------
Confidence            344556789999999999999999999884     3568899995   234   69999999998742            


Q ss_pred             cccccccccccccccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHhcc
Q 014342          325 PILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDK  400 (426)
Q Consensus       325 ~~~~~~v~~l~i~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~~~  400 (426)
                       ..+..++++|.            +.++++.+++...++.+++.++++-++||||++++++|+||..|++..+.+.
T Consensus       193 -~~~~~i~~im~------------~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~itiDDiidvi~eE  255 (451)
T COG2239         193 -EPDELLKDLME------------DDVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITIDDIIDVIEEE  255 (451)
T ss_pred             -CcHhHHHHHhc------------ccceeecccCCHHHHHHHHHHhCCeecceECCCCceeeeeeHHHHHHHHHHH
Confidence             01334444542            4678999999999999999999999999999999999999999999887654

>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain

Probab=98.67  E-value=1.8e-07  Score=75.68  Aligned_cols=67  Identities=27%  Similarity=0.538  Sum_probs=51.4

Q ss_pred             EEEEE-ecCCCceEEEEeccCCCCCC-CCCCCCCCCCCeEEEEEec--------CCc-eEEEEEEE-cCee--ecCCCCC
Q 014342           22 PVRFI-WPNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICRL--------PPG-HHQYKFYV-DGEW--RHDENQP   87 (426)
Q Consensus        22 ~v~f~-~~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~L--------~~g-~y~ykFiV-Dg~w--~~d~~~p   87 (426)
                      .++|+ |...|++|+|+|+||+|++. .+|.+.+  .|.|++.++.        +.| .|.|++.. ||+|  +.||-..
T Consensus         6 g~~FrvwAP~A~~V~l~GdFn~W~~~~~~m~k~~--~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~~~G~~~~~~DPyA~   83 (99)
T cd02854           6 GVTYREWAPNAEEVYLIGDFNNWDRNAHPLKKDE--FGVWEITIPPNEDGSPAIPHGSKIKVRMVTPSGEWIDRIPAWIK   83 (99)
T ss_pred             eEEEEEECCCCCEEEEEccCCCCCCcCcccEECC--CCEEEEEECCcccccccCCCCCEEEEEEEeCCCCEEEEcCccee
Confidence            46787 55569999999999999874 6899864  7999999874        455 57777776 7876  5788766


Q ss_pred             eee
Q 014342           88 HVS   90 (426)
Q Consensus        88 ~~~   90 (426)
                      .+.
T Consensus        84 ~~~   86 (99)
T cd02854          84 YVT   86 (99)
T ss_pred             EEE
Confidence            544

Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=98.66  E-value=3.3e-07  Score=93.93  Aligned_cols=137  Identities=20%  Similarity=0.338  Sum_probs=109.3

Q ss_pred             HHHHHHH--hccccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCC
Q 014342          145 RDRISSF--LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGS  222 (426)
Q Consensus       145 ~~~~~~~--l~~~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~  222 (426)
                      ++-+...  |++.++.++|..-..++.++.+.++.++.+.+.+++.+..||++++.+.++|++..+|++........   
T Consensus       194 ~~mi~~v~~l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~---  270 (429)
T COG1253         194 REMINNVLDLDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQS---  270 (429)
T ss_pred             HHHHHHHhccCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCcc---
Confidence            3344444  56899999999999999999999999999999999999999999767899999999998865532100   


Q ss_pred             CCChhhhcccchhhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEE
Q 014342          223 NLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILY  302 (426)
Q Consensus       223 ~~~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvG  302 (426)
                      ..        ...       .            . -+++..+++..++.++++.|.+.+.|-..|+|+   -|   .+.|
T Consensus       271 ~~--------~~~-------~------------~-~~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDE---yG---~~~G  316 (429)
T COG1253         271 DL--------DLR-------V------------L-VRPPLFVPETLSLSDLLEEFREERTHMAIVVDE---YG---GVEG  316 (429)
T ss_pred             cc--------chh-------h------------c-ccCCeEecCCCcHHHHHHHHHHhCCeEEEEEEc---CC---CeEE
Confidence            00        000       0            0 136778999999999999999999999999963   34   4999


Q ss_pred             EecHHhHHHHHHhhcc
Q 014342          303 LASLSDILKCICRHFK  318 (426)
Q Consensus       303 iit~~dil~~l~~~~~  318 (426)
                      +||..||+..+.....
T Consensus       317 lVTleDIiEeIvGei~  332 (429)
T COG1253         317 LVTLEDIIEEIVGEIP  332 (429)
T ss_pred             EeEHHHHHHHHhCCCc
Confidence            9999999999886543

>PRK11573 hypothetical protein; Provisional

Probab=98.64  E-value=4.3e-07  Score=92.40  Aligned_cols=121  Identities=8%  Similarity=0.096  Sum_probs=95.0

Q ss_pred             CCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccccc
Q 014342          258 PRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLG  337 (426)
Q Consensus       258 ~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~  337 (426)
                      ...++.++.++++.++++.+.+.+.+|+||.++ +.+    +++|++..+|++..+... ..         .++..+  .
T Consensus       196 r~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~-~~D----~IiGiv~~kDll~~~~~~-~~---------~~~~~l--~  258 (413)
T PRK11573        196 RNEIVGIDINDDWKSILRQLTHSPHGRIVLYRD-SLD----DAISMLRVREAYRLMTEK-KE---------FTKENM--L  258 (413)
T ss_pred             cceEEEEECCCCHHHHHHHHHhCCCceEEEEcC-CCC----ceEEEEEHHHHHHHhhcc-Cc---------CCHHHH--H
Confidence            457889999999999999999999999999963 223    599999999999754321 10         001111  1


Q ss_pred             ccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHhccccc
Q 014342          338 TWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYA  403 (426)
Q Consensus       338 ~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~~~~~~  403 (426)
                      ..+        +++..++++.++.++++.|.+++.+-.-|+||-|...|+||..||+.-+-...+.
T Consensus       259 ~~~--------r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~~~GiVTleDilEeivGei~d  316 (413)
T PRK11573        259 RAA--------DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIVGDFTT  316 (413)
T ss_pred             hhc--------cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCCeEEEeeHHHHHHHHhCCCCc
Confidence            111        4778899999999999999999999888999999999999999999866654433

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=98.58  E-value=3.7e-07  Score=89.01  Aligned_cols=167  Identities=18%  Similarity=0.237  Sum_probs=113.8

Q ss_pred             HHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCC---CCCChhhhcccchhhhHHHHHhhccccccCCCCCCCCCC
Q 014342          184 YEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNG---SNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRP  260 (426)
Q Consensus       184 ~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~---~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~  260 (426)
                      -++.-...|++.+    ...-+|..+...++..+...+   .+-..+. ....+..|+.....+             ...
T Consensus        56 tr~itl~tPlvsS----pMDTVtes~MAiaMAl~ggIg~IHhNctpe~-QA~~v~~vK~~~~g~-------------~~~  117 (503)
T KOG2550|consen   56 TRNITLNTPLVSS----PMDTVTESEMAIAMALLGGIGFIHHNCTPED-QADMVRRVKNYENGF-------------INN  117 (503)
T ss_pred             hhcccccCceecc----CCcccchhHHHHHHHhcCCceeeecCCCHHH-HHHHHHHHHHhhccc-------------ccC
Confidence            3444556698865    356688888776665443211   1222121 122233443332211             234


Q ss_pred             ceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccccccccc
Q 014342          261 LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWV  340 (426)
Q Consensus       261 ~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~  340 (426)
                      ++...|+.++.++++...+++...+||... ...+  ++++|+||.+|+- ++.++           ...+.++|.    
T Consensus       118 p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~-g~~~--~KLvG~vtsrdi~-f~~~~-----------~~~~~~vmt----  178 (503)
T KOG2550|consen  118 PIVISPTTTVGEVKEAKEKHGFSGIPVTED-GKRG--SKLVGIITSRDIQ-FLEDN-----------SLLVSDVMT----  178 (503)
T ss_pred             CcccCCcccchhhhhhcccccccccccccC-Cccc--ceeEEEEehhhhh-hhhcc-----------cchhhhhcc----
Confidence            567899999999999999999999999952 2222  3799999999973 44222           223334442    


Q ss_pred             cccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342          341 PRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (426)
Q Consensus       341 ~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~  395 (426)
                              +..++.....++.++-+++.+++-..+||||++|+++.+|++.||.+
T Consensus       179 --------~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k  225 (503)
T KOG2550|consen  179 --------KNPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLMK  225 (503)
T ss_pred             --------cccccccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehhhhhh
Confidence                    34477888999999999999999999999999999999999999876

>PF00571 CBS: CBS domain CBS domain web page

Probab=98.56  E-value=1.3e-07  Score=68.08  Aligned_cols=54  Identities=19%  Similarity=0.466  Sum_probs=48.2

Q ss_pred             ccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHH
Q 014342          159 ELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR  215 (426)
Q Consensus       159 d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~  215 (426)
                      |+|..  ++++++++.++.+|++.|.++++..+||+|++ ++++|++|.+|+++++.
T Consensus         3 ~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~-~~~~G~is~~dl~~~l~   56 (57)
T PF00571_consen    3 DIMTP--PPITVSPDDSLEEALEIMRKNGISRLPVVDED-GKLVGIISRSDLLKALL   56 (57)
T ss_dssp             HHSBS--SSEEEETTSBHHHHHHHHHHHTSSEEEEESTT-SBEEEEEEHHHHHHHHH
T ss_pred             ECCcC--CCEEEcCcCcHHHHHHHHHHcCCcEEEEEecC-CEEEEEEEHHHHHhhhh
Confidence            45655  78899999999999999999999999999965 89999999999988763

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=98.54  E-value=1.2e-06  Score=87.48  Aligned_cols=110  Identities=11%  Similarity=0.218  Sum_probs=88.3

Q ss_pred             eEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccccccccc
Q 014342          262 VQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVP  341 (426)
Q Consensus       262 v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~~  341 (426)
                      ....++.+..+++..|...+...+.|+++   .+   ++.|.++..++.+++...            .++.+.+      
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~g~~~~~~~~~~~~~~------------~~~~~~~------  308 (363)
T TIGR01186       253 ITKTADKGPRSALQLMRDERVDSLYVVDR---QN---KLVGVVDVESIKQARKKA------------QGLQDVL------  308 (363)
T ss_pred             eeecCCCCHHHHHHHHHhcCCceEEEEcC---CC---CEEEEEeHHHHHHHhhcC------------Cchhhhh------
Confidence            45667889999999999999999999952   34   699999999987765421            1122222      


Q ss_pred             ccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHhcccc
Q 014342          342 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAY  402 (426)
Q Consensus       342 ~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~~~~~  402 (426)
                            ...+.++.++++|.+++.+|.+++.. +||||++|+++|+||+.+|+..+....|
T Consensus       309 ------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~~~~~~  362 (363)
T TIGR01186       309 ------IDDIYTVDAGTLLRETVRKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDALYDSRE  362 (363)
T ss_pred             ------ccCCceECCCCcHHHHHHHHHhCCCC-EEEECCCCcEEEEEEHHHHHHHHHhhcc
Confidence                  13556899999999999999999999 9999999999999999999998876544

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=98.46  E-value=2.9e-06  Score=87.00  Aligned_cols=121  Identities=17%  Similarity=0.234  Sum_probs=96.9

Q ss_pred             CCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccccc
Q 014342          258 PRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLG  337 (426)
Q Consensus       258 ~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~  337 (426)
                      +..++.+..+.++.++++.+.+.+++|+||.++ +.+    .++|++..+|++.........              ....
T Consensus       215 R~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~-~~D----~iiGiv~~Kdll~~~~~~~~~--------------~~~~  275 (429)
T COG1253         215 RTDIVALDLTDTVEELIELILESGHSRIPVYDG-DLD----NIIGIVHVKDLLRALLDGQSD--------------LDLR  275 (429)
T ss_pred             cccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcC-CCC----cEEEEEEHHHHHHHHhcCccc--------------cchh
Confidence            457888899999999999999999999999962 333    599999999999986644210              0000


Q ss_pred             ccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHhccccccC
Q 014342          338 TWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQI  405 (426)
Q Consensus       338 ~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~~~~~~~l  405 (426)
                      ...        +++..+++..++.++++.|.+++.+-.-|+||-|.+.|++|..||+..+-...+..-
T Consensus       276 ~~~--------~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG~~~GlVTleDIiEeIvGei~de~  335 (429)
T COG1253         276 VLV--------RPPLFVPETLSLSDLLEEFREERTHMAIVVDEYGGVEGLVTLEDIIEEIVGEIPDEH  335 (429)
T ss_pred             hcc--------cCCeEecCCCcHHHHHHHHHHhCCeEEEEEEcCCCeEEEeEHHHHHHHHhCCCcCcc
Confidence            011        266789999999999999999999999999999999999999999998776555443

>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3

Probab=98.42  E-value=2.1e-07  Score=73.10  Aligned_cols=58  Identities=31%  Similarity=0.650  Sum_probs=45.6

Q ss_pred             eEEEEE-ecCCCceEEEEeccCC-CCCC-CCCCC-CCCCCCeEEEEEe--cCCceEEEEEEEcCee
Q 014342           21 VPVRFI-WPNGGRRVSLSGSFTR-WSEP-MPMSP-SEGCPAVFQIICR--LPPGHHQYKFYVDGEW   80 (426)
Q Consensus        21 ~~v~f~-~~~~~~~V~l~Gsf~~-W~~~-~~m~~-~~~~~~~~~~~~~--L~~g~y~ykFiVDg~w   80 (426)
                      ..++|+ |...|++|.|++.|++ |... ++|.+ .+  +|.|+++++  +++|.++|+|.|+|..
T Consensus        11 ~~~~F~vwaP~A~~V~l~~~~~~~~~~~~~~m~~~~~--~G~w~~~~~~~~~~g~~~Y~y~i~~~~   74 (85)
T PF02922_consen   11 GGVTFRVWAPNAKSVELVLYFNGSWPAEEYPMTRKDD--DGVWEVTVPGDLPPGGYYYKYRIDGDD   74 (85)
T ss_dssp             TEEEEEEE-TTESEEEEEEETTTSSEEEEEEEEEECT--TTEEEEEEEGCGTTTT-EEEEEEEETT
T ss_pred             CEEEEEEECCCCCEEEEEEEeeecCCCceEEeeecCC--CCEEEEEEcCCcCCCCEEEEEEEEeCC
Confidence            467787 5567999999999999 8754 68984 43  899999998  8889888888887653

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=98.40  E-value=3.6e-06  Score=85.65  Aligned_cols=130  Identities=22%  Similarity=0.374  Sum_probs=103.4

Q ss_pred             HHHHHHHHhc--cccccccCCCCCcEEEEcCCccHHHHHHHHHHC-----CCCeeeeeeCCCCcEEEEeehHHHHHHHHH
Q 014342          144 SRDRISSFLS--THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQ-----GLPMVPLWDDFKGRFVGVLSALDFILILRE  216 (426)
Q Consensus       144 ~~~~~~~~l~--~~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~-----~i~slPV~D~~~~~~vGilT~~Dli~~l~~  216 (426)
                      +++.++..++  +.++.-+|..  ..+++..+.|+.+|+..+++.     .+..+.|+|. +++++|+++.++++.    
T Consensus       119 ~r~~v~~~l~y~e~taG~~Mt~--e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~-~~~L~Gvvsl~~Ll~----  191 (451)
T COG2239         119 ERARVRQLLSYPEDTAGRIMTT--EFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDE-KGKLLGVVSLRDLLT----  191 (451)
T ss_pred             HHHHHHHhcCCChhhhhcccee--eeEEeccCcCHHHHHHHHHHhcccccccceEEEECC-ccceEEEeeHHHHhc----
Confidence            6777777776  7788888977  899999999999999999954     4678899996 469999999998751    


Q ss_pred             hccCCCCCChhhhcccchhhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCC
Q 014342          217 LGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGS  296 (426)
Q Consensus       217 ~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~  296 (426)
                        .++     ++    .+.       .+            |.+.++++.+++...++++++.+++.-.+||+|   +++ 
T Consensus       192 --a~~-----~~----~i~-------~i------------m~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd---~~~-  237 (451)
T COG2239         192 --AEP-----DE----LLK-------DL------------MEDDVVSVLADDDQEEVARLFEKYDLLAVPVVD---EDN-  237 (451)
T ss_pred             --CCc-----Hh----HHH-------HH------------hcccceeecccCCHHHHHHHHHHhCCeecceEC---CCC-
Confidence              100     00    111       11            345689999999999999999999999999996   345 


Q ss_pred             cceEEEEecHHhHHHHHHhh
Q 014342          297 CQEILYLASLSDILKCICRH  316 (426)
Q Consensus       297 ~~~lvGiit~~dil~~l~~~  316 (426)
                        +++|++|..|++..+.+.
T Consensus       238 --~LiG~itiDDiidvi~eE  255 (451)
T COG2239         238 --RLIGIITIDDIIDVIEEE  255 (451)
T ss_pred             --ceeeeeeHHHHHHHHHHH
Confidence              799999999999887643

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=98.38  E-value=4.3e-06  Score=84.64  Aligned_cols=106  Identities=12%  Similarity=0.146  Sum_probs=84.6

Q ss_pred             eCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccccccccccc
Q 014342          264 AGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRI  343 (426)
Q Consensus       264 v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~~~~  343 (426)
                      ..++.+..+++..|...+...+.|+|   +.+   +++|+++..++.+.....            .++.+..        
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~g~~~~~~~~~~~~~~------------~~~~~~~--------  343 (400)
T PRK10070        290 KTPGFGPRSALKLLQDEDREYGYVIE---RGN---KFVGAVSIDSLKTALTQQ------------QGLDAAL--------  343 (400)
T ss_pred             cCCCCCHHHHHHHHHhcCCceEEEEc---CCC---cEEEEEeHHHHHhhhhcC------------Cchhhhh--------
Confidence            44677899999999999999999995   345   699999999997764321            1111111        


Q ss_pred             CCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHhcc
Q 014342          344 GEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDK  400 (426)
Q Consensus       344 ~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~~~  400 (426)
                          ...+.++.+++++.+|+..|.+.... +||||++|+++|+|++.++++.+...
T Consensus       344 ----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~~~  395 (400)
T PRK10070        344 ----IDAPLAVDAQTPLSELLSHVGQAPCA-VPVVDEDQQYVGIISKGMLLRALDRE  395 (400)
T ss_pred             ----ccCCceeCCCCCHHHHHHHHHhCCCc-EEEECCCCcEEEEEEHHHHHHHHHhc
Confidence                12556899999999999999998776 99999999999999999999977653

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=98.22  E-value=4.8e-06  Score=75.88  Aligned_cols=116  Identities=11%  Similarity=0.163  Sum_probs=95.1

Q ss_pred             CCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccccc
Q 014342          258 PRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLG  337 (426)
Q Consensus       258 ~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~  337 (426)
                      +...+++..+.++.+++..|.+...+|+||+.++ .+    .+.||+-..|+|+++......+         .++++   
T Consensus        76 RSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~ed-kD----~v~GIL~AKDLL~~~~~~~~~F---------~i~~l---  138 (293)
T COG4535          76 RSQMITLKRNQTLDECLDVIIESAHSRFPVISED-KD----HVEGILLAKDLLPFMRSDAEPF---------DIKEL---  138 (293)
T ss_pred             HHHheeccccCCHHHHHHHHHHhccccCCcccCC-ch----hhhhhhhHHHHHHHhcCCcccc---------cHHHh---
Confidence            4567889999999999999999999999999642 22    5999999999999976543221         11111   


Q ss_pred             ccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHhcc
Q 014342          338 TWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDK  400 (426)
Q Consensus       338 ~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~~~  400 (426)
                        .        +|.+.++++..|...++-+..++.+-.-||||=|.+-|++|..||+..+-..
T Consensus       139 --L--------RPav~VPESKrvd~lLkeFR~~RnHMAIViDEfGgVsGLVTIEDiLEqIVGd  191 (293)
T COG4535         139 --L--------RPAVVVPESKRVDRLLKEFRSQRNHMAIVIDEFGGVSGLVTIEDILEQIVGD  191 (293)
T ss_pred             --c--------ccceecccchhHHHHHHHHHhhcCceEEEEeccCCeeeeEEHHHHHHHHhcc
Confidence              1        5888899999999999999999988888999999999999999999876544

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=98.18  E-value=2.4e-05  Score=76.11  Aligned_cols=131  Identities=21%  Similarity=0.286  Sum_probs=106.3

Q ss_pred             ccccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhccc
Q 014342          153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETH  232 (426)
Q Consensus       153 ~~~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~  232 (426)
                      ...|+.|+|-....+..+|.+++.++..+.+...-...+|||..+-++.+||+-.+|+++.+.+...    +..+     
T Consensus       198 e~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~----~~k~-----  268 (423)
T COG4536         198 ENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNE----FTKE-----  268 (423)
T ss_pred             ccceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCc----ccHh-----
Confidence            4788999999999999999999999999999999999999998777789999999998887754321    1111     


Q ss_pred             chhhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHH
Q 014342          233 TISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (426)
Q Consensus       233 ~i~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~  312 (426)
                         ++...                 ..+++.+++.+++.+-+..|.+++-|--.|+|   +-|   .+.|++|..||+..
T Consensus       269 ---d~~~~-----------------a~epyFVPe~Tpl~~QL~~F~~~k~hialVVD---EYG---~i~GLVTLEDIlEE  322 (423)
T COG4536         269 ---DILRA-----------------ADEPYFVPEGTPLSDQLVAFQRNKKHIALVVD---EYG---DIQGLVTLEDILEE  322 (423)
T ss_pred             ---HHHHH-----------------hcCCeecCCCCcHHHHHHHHHHhcceEEEEEe---ccC---cEEeeeeHHHHHHH
Confidence               11111                 23567899999999999999999988888885   346   69999999999999


Q ss_pred             HHhhcc
Q 014342          313 ICRHFK  318 (426)
Q Consensus       313 l~~~~~  318 (426)
                      +...+.
T Consensus       323 IVGdft  328 (423)
T COG4536         323 IVGDFT  328 (423)
T ss_pred             Hhcccc
Confidence            886655

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=98.06  E-value=7.3e-06  Score=67.87  Aligned_cols=47  Identities=28%  Similarity=0.486  Sum_probs=43.5

Q ss_pred             CCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342          349 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (426)
Q Consensus       349 ~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~  395 (426)
                      +++.++.+++++.+|++.|.+++++.+||+|++|+++|+|+..||.+
T Consensus        66 ~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~  112 (113)
T cd04597          66 RKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE  112 (113)
T ss_pred             CCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence            46778999999999999999999999999999999999999999863

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=98.05  E-value=1.5e-05  Score=53.97  Aligned_cols=47  Identities=30%  Similarity=0.537  Sum_probs=42.8

Q ss_pred             eEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHH
Q 014342          351 FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA  397 (426)
Q Consensus       351 v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~  397 (426)
                      +.++.+++++.++++.|.+++++.+||++++++++|+++..|+.+.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~~   48 (49)
T smart00116        2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKAL   48 (49)
T ss_pred             ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHhh
Confidence            45789999999999999999999999999889999999999998754

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=98.05  E-value=1.6e-05  Score=81.63  Aligned_cols=145  Identities=13%  Similarity=0.165  Sum_probs=102.9

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccC--C--Cccc-----
Q 014342          256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSS--S--SLPI-----  326 (426)
Q Consensus       256 ~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~--~--~~~~-----  326 (426)
                      .|++|++++..-+.+...++.+....++.+||+|+.+.+. ..++.|+|-++.++..+.+..-...  .  ..+.     
T Consensus       587 v~~~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~-~~~l~GlILRshl~vlL~~~~f~~~~~~~~~~~~~~~~~  665 (762)
T KOG0474|consen  587 VMSKPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNE-AGRLHGLILRSHLLVLLKKRVFVEESRSTFDLPVRRKFT  665 (762)
T ss_pred             hccCCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCcc-chhhhHHHHHHHHHHHHHhhhhhccCccccCcchhhcCC
Confidence            4788999999999999999999999999999997533211 1269999999999887764421100  0  0000     


Q ss_pred             ------ccccccccccccccc----ccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHH
Q 014342          327 ------LQQPVSSIQLGTWVP----RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITAL  396 (426)
Q Consensus       327 ------~~~~v~~l~i~~~~~----~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~  396 (426)
                            -..+++++.+.+..-    .+...|...+.++.+++++..++.++..-+++++-||+...+++|++||+|+..+
T Consensus       666 ~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~gilTR~D~~~~  745 (762)
T KOG0474|consen  666 FRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRVVGILTRKDLARY  745 (762)
T ss_pred             HHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEecCCCceeEEEehhhhhhH
Confidence                  012233332211110    1123445667789999999999999999999999999998999999999999875


Q ss_pred             Hhccc
Q 014342          397 AKDKA  401 (426)
Q Consensus       397 ~~~~~  401 (426)
                      -.-+.
T Consensus       746 ~~l~~  750 (762)
T KOG0474|consen  746 RILGL  750 (762)
T ss_pred             HHhcc
Confidence            54333

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=98.04  E-value=1.6e-05  Score=72.56  Aligned_cols=128  Identities=18%  Similarity=0.273  Sum_probs=104.0

Q ss_pred             ccccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhccc
Q 014342          153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETH  232 (426)
Q Consensus       153 ~~~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~  232 (426)
                      ...++.|+|-..++.+++..+.++.+.+..+.+..-+.-||+.+++..+.||+-.+|++.++.   .....+        
T Consensus        65 adl~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~---~~~~~F--------  133 (293)
T COG4535          65 ADLRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMR---SDAEPF--------  133 (293)
T ss_pred             HHhhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhc---CCcccc--------
Confidence            367888988888899999999999999999999999999999988889999999999887653   111111        


Q ss_pred             chhhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHH
Q 014342          233 TISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (426)
Q Consensus       233 ~i~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~  312 (426)
                         .+++                 +-+|.+.|+++-.+...++-+..++-|-..|+|  +-.|    +-|+||-.||+..
T Consensus       134 ---~i~~-----------------lLRPav~VPESKrvd~lLkeFR~~RnHMAIViD--EfGg----VsGLVTIEDiLEq  187 (293)
T COG4535         134 ---DIKE-----------------LLRPAVVVPESKRVDRLLKEFRSQRNHMAIVID--EFGG----VSGLVTIEDILEQ  187 (293)
T ss_pred             ---cHHH-----------------hcccceecccchhHHHHHHHHHhhcCceEEEEe--ccCC----eeeeEEHHHHHHH
Confidence               1111                 136778899999999999999999999999995  3444    9999999999998


Q ss_pred             HHhhc
Q 014342          313 ICRHF  317 (426)
Q Consensus       313 l~~~~  317 (426)
                      +....
T Consensus       188 IVGdI  192 (293)
T COG4535         188 IVGDI  192 (293)
T ss_pred             Hhccc
Confidence            87543

>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]

Probab=97.95  E-value=5.6e-05  Score=79.54  Aligned_cols=165  Identities=21%  Similarity=0.266  Sum_probs=97.1

Q ss_pred             ceEEEEE-ecCCCceEEEEeccCCCCCC-CCCCCCCCCCCeEEEEEe-cCCceEEEEEEEcCe-----eecCCCCCeeeC
Q 014342           20 LVPVRFI-WPNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDGE-----WRHDENQPHVSG   91 (426)
Q Consensus        20 ~~~v~f~-~~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~-L~~g~y~ykFiVDg~-----w~~d~~~p~~~d   91 (426)
                      ...++|+ |...++.|.|.|+||+|+.. .+|.... ..|.|.++++ +++| +.|||.+++.     ++.||..-....
T Consensus        35 ~~~~~F~vWAP~a~~V~vvgdfn~w~~~~~~~~~~~-~~G~we~~vp~~~~G-~~Yky~l~~~~g~~~~~~DP~a~~~~~  112 (628)
T COG0296          35 VSGVRFRVWAPNARRVSLVGDFNDWDGRRMPMRDRK-ESGIWELFVPGAPPG-TRYKYELIDPSGQLRLKADPYARRQEV  112 (628)
T ss_pred             CCceEEEEECCCCCeEEEEeecCCccceecccccCC-CCceEEEeccCCCCC-CeEEEEEeCCCCceeeccCchhhccCC
Confidence            4567787 77789999999999999984 3454332 4699999999 9999 9999998654     266665544333


Q ss_pred             CCCCeeeEEEeccCCCCCCC----CCCCCCCCCcccc-cccccCCCCcc---ccHHHHHHHHHHHHHHhccccccccCCC
Q 014342           92 NYGVVNCVYIAVPQPDMVPN----TISPETSGNMEVD-DVVMRPEGFAQ---YSEADLQLSRDRISSFLSTHTVYELLPD  163 (426)
Q Consensus        92 ~~G~~nn~~~v~~~~~~~~~----~~~~~~~~~~d~~-~~l~~~~~~~~---~~~~~l~~~~~~~~~~l~~~~~~d~~p~  163 (426)
                      .-++-+   .|...++..=.    -.....+-.-++- ..+| -+++..   .+-.++..++-+|-.-|+ .|+-++||.
T Consensus       113 ~p~~aS---~v~~~~~y~W~d~~~~~~~~~~~~e~~vIYElH-vGs~~~~~~~~~~e~a~~llpYl~elG-~T~IELMPv  187 (628)
T COG0296         113 GPHTAS---QVVDLPDYEWQDERWDRAWRGRFWEPIVIYELH-VGSFTPDRFLGYFELAIELLPYLKELG-ITHIELMPV  187 (628)
T ss_pred             CCCCcc---eecCCCCcccccccccccccCCCCCCceEEEEE-eeeccCCCCcCHHHHHHHHhHHHHHhC-CCEEEEccc
Confidence            222222   22122122111    0000111011222 3444 234434   466777777778878887 899999998


Q ss_pred             CCcE------------EE----EcCCccHHHHHHHHHHCCCCee
Q 014342          164 SGKV------------TA----LDVNLAVKQAFHVLYEQGLPMV  191 (426)
Q Consensus       164 s~~v------------i~----l~~~~sv~~A~~~l~~~~i~sl  191 (426)
                      ....            -.    ..+-.-++.-++.+..+||.-+
T Consensus       188 ~e~p~~~sWGYq~~g~yAp~sryGtPedfk~fVD~aH~~GIgVi  231 (628)
T COG0296         188 AEHPGDRSWGYQGTGYYAPTSRYGTPEDFKALVDAAHQAGIGVI  231 (628)
T ss_pred             ccCCCCCCCCCCcceeccccccCCCHHHHHHHHHHHHHcCCEEE
Confidence            7321            11    1122335666666667777654

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=97.89  E-value=0.00013  Score=71.51  Aligned_cols=129  Identities=18%  Similarity=0.260  Sum_probs=93.6

Q ss_pred             cHHHHHHHHHHHHHHhccccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCC--CCcEEEEeehHHHHHHH
Q 014342          137 SEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDF--KGRFVGVLSALDFILIL  214 (426)
Q Consensus       137 ~~~~l~~~~~~~~~~l~~~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~--~~~~vGilT~~Dli~~l  214 (426)
                      ++++.+..-+....|-+..        ....+++.++.++-++++....+++..+||.+..  ..+++|+||.+|+ +++
T Consensus        96 tpe~QA~~v~~vK~~~~g~--------~~~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi-~f~  166 (503)
T KOG2550|consen   96 TPEDQADMVRRVKNYENGF--------INNPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDI-QFL  166 (503)
T ss_pred             CHHHHHHHHHHHHHhhccc--------ccCCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhh-hhh
Confidence            4455444444555554433        2346778889999999999999999999998532  4689999999995 333


Q ss_pred             HHhccCCCCCChhhhcccchhhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCC
Q 014342          215 RELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPA  294 (426)
Q Consensus       215 ~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~  294 (426)
                      .   .+. .         .+++                   +|+...++...+.+|.++-+++.+.+...+||++   +.
T Consensus       167 ~---~~~-~---------~~~~-------------------vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~---~~  211 (503)
T KOG2550|consen  167 E---DNS-L---------LVSD-------------------VMTKNPVTGAQGITLKEANEILKKIKKGKLPVVD---DK  211 (503)
T ss_pred             h---ccc-c---------hhhh-------------------hcccccccccccccHHHHHHHHHhhhcCCcceec---cC
Confidence            1   110 0         0111                   2455558888899999999999999999999996   34


Q ss_pred             CCcceEEEEecHHhHHHH
Q 014342          295 GSCQEILYLASLSDILKC  312 (426)
Q Consensus       295 g~~~~lvGiit~~dil~~  312 (426)
                      |   +++.++++.|+.+.
T Consensus       212 g---elva~~~rtDl~k~  226 (503)
T KOG2550|consen  212 G---ELVAMLSRTDLMKN  226 (503)
T ss_pred             C---ceeeeeehhhhhhh
Confidence            5   69999999999875

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=97.85  E-value=0.00022  Score=71.37  Aligned_cols=107  Identities=10%  Similarity=0.220  Sum_probs=82.1

Q ss_pred             EEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhcccc
Q 014342          169 ALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKR  248 (426)
Q Consensus       169 ~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~  248 (426)
                      ....+.+..+|++.|..++...+.|+|.+ +++.|+++..++...+..    ...          +..            
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~----~~~----------~~~------------  306 (363)
T TIGR01186       254 TKTADKGPRSALQLMRDERVDSLYVVDRQ-NKLVGVVDVESIKQARKK----AQG----------LQD------------  306 (363)
T ss_pred             eecCCCCHHHHHHHHHhcCCceEEEEcCC-CCEEEEEeHHHHHHHhhc----CCc----------hhh------------
Confidence            44556688999999999999999999964 689999998886543321    000          010            


Q ss_pred             ccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhh
Q 014342          249 QMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRH  316 (426)
Q Consensus       249 ~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~  316 (426)
                             .+...+.++.++++|.+++..|.+.+.. +||+|   ++|   +++|+||..++++.+...
T Consensus       307 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~---~~~---~~~g~i~~~~~~~~~~~~  360 (363)
T TIGR01186       307 -------VLIDDIYTVDAGTLLRETVRKVLKAGIK-VPVVD---EDQ---RLVGIVTRGSLVDALYDS  360 (363)
T ss_pred             -------hhccCCceECCCCcHHHHHHHHHhCCCC-EEEEC---CCC---cEEEEEEHHHHHHHHHhh
Confidence                   0134456799999999999999999988 99995   346   799999999999988653

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=97.82  E-value=0.00021  Score=72.40  Aligned_cols=106  Identities=16%  Similarity=0.202  Sum_probs=80.8

Q ss_pred             EcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhccccc
Q 014342          170 LDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQ  249 (426)
Q Consensus       170 l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~  249 (426)
                      ...+.+..+|+..|.+++..++.|+|+ +++++|+++..++......   . .          .+...            
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~---~-~----------~~~~~------------  342 (400)
T PRK10070        290 KTPGFGPRSALKLLQDEDREYGYVIER-GNKFVGAVSIDSLKTALTQ---Q-Q----------GLDAA------------  342 (400)
T ss_pred             cCCCCCHHHHHHHHHhcCCceEEEEcC-CCcEEEEEeHHHHHhhhhc---C-C----------chhhh------------
Confidence            345668899999999999999999996 5799999999997543321   0 0          00110            


Q ss_pred             cCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhh
Q 014342          250 MDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRH  316 (426)
Q Consensus       250 ~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~  316 (426)
                             +.....++.++++|.+++..|...... +||+|   ++|   +++|+||..++++.+...
T Consensus       343 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~---~~~---~~~g~~~~~~~~~~~~~~  395 (400)
T PRK10070        343 -------LIDAPLAVDAQTPLSELLSHVGQAPCA-VPVVD---EDQ---QYVGIISKGMLLRALDRE  395 (400)
T ss_pred             -------hccCCceeCCCCCHHHHHHHHHhCCCc-EEEEC---CCC---cEEEEEEHHHHHHHHHhc
Confidence                   123456899999999999999987655 99995   346   799999999999988643

>cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=97.80  E-value=0.00013  Score=58.38  Aligned_cols=54  Identities=28%  Similarity=0.482  Sum_probs=43.3

Q ss_pred             eEEEEEecC---CCceEEEEec---cCCCCCC--CCCCCCCCCCCeEEEEEecCCc-eEEEEEEE
Q 014342           21 VPVRFIWPN---GGRRVSLSGS---FTRWSEP--MPMSPSEGCPAVFQIICRLPPG-HHQYKFYV   76 (426)
Q Consensus        21 ~~v~f~~~~---~~~~V~l~Gs---f~~W~~~--~~m~~~~~~~~~~~~~~~L~~g-~y~ykFiV   76 (426)
                      ++++|..+.   .|++++|+|+   |.+|++.  .+|...+  .+.|++++.||++ .++|||++
T Consensus         1 v~v~F~v~~~t~~ge~l~v~G~~~~lG~W~~~~a~~l~~~~--~~~W~~~v~l~~~~~~eYKy~~   63 (95)
T cd05808           1 VAVTFNVTATTVWGQNVYVVGNVPELGNWSPANAVALSAAT--YPVWSGTVDLPAGTAIEYKYIK   63 (95)
T ss_pred             CeEEEEEEEECCCCCEEEEEeCcHHhCCCChhhCccCCCCC--CCCEEEEEEeCCCCeEEEEEEE
Confidence            356777654   4899999995   7899964  5887754  6889999999987 69999996

This domain is found in several bacterial and fungal alpha-amylases including the maltopentaose-forming amylases (G5-amylases). Most alpha-amylases have, in addition to the C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13, which hydrolyzes internal alpha-1,4-glucosidic bonds in starch and related saccharides, yielding maltotriose and maltose. Two types of soluble substrates are used by alpha-amylases including long substrates (e.g. amylose) and short substrates (e.g. maltodextrins or maltooligosaccharides). The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. lafo

>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3

Probab=97.80  E-value=4.6e-05  Score=61.27  Aligned_cols=56  Identities=29%  Similarity=0.561  Sum_probs=46.5

Q ss_pred             eEEEEEecC---CCceEEEEeccC---CCCC--CCCCCCCCC--CCCeEEEEEecCCc-eEEEEEEE
Q 014342           21 VPVRFIWPN---GGRRVSLSGSFT---RWSE--PMPMSPSEG--CPAVFQIICRLPPG-HHQYKFYV   76 (426)
Q Consensus        21 ~~v~f~~~~---~~~~V~l~Gsf~---~W~~--~~~m~~~~~--~~~~~~~~~~L~~g-~y~ykFiV   76 (426)
                      +.|+|+...   .++.|+|+||..   +|++  .++|...+.  ....|++++.||.| .++|||++
T Consensus         2 v~V~F~v~~~~~~ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp~~~~~eYKy~i   68 (96)
T PF00686_consen    2 VSVTFRVNYQTQPGESVYIVGSCPELGNWDPKKAVPLQWNEGTENYPIWSATVDLPAGTPFEYKYVI   68 (96)
T ss_dssp             EEEEEEESE---TTEEEEEEESSGGGTTTSGGGSBESEBESSSSTTTSEEEEEEEETTSEEEEEEEE
T ss_pred             EEEEEEEEeECCCCCEEEEEECcHHhCCCChHhccccccccCCCCCCeEEEEEECcCCCEEEEEEEE
Confidence            678888854   489999999998   7997  468887532  35899999999998 59999998

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=97.74  E-value=0.00012  Score=71.31  Aligned_cols=117  Identities=11%  Similarity=0.162  Sum_probs=92.6

Q ss_pred             CCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccccc
Q 014342          258 PRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLG  337 (426)
Q Consensus       258 ~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~  337 (426)
                      +..+..+..+++..++++.+...-+.|+|+..+ +-+    +++||+..+|+++++.+....        .+    ..+.
T Consensus       209 R~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~-~~D----nIiGvlh~r~llr~l~e~~~~--------~k----~d~~  271 (423)
T COG4536         209 RNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRD-DLD----NIIGVLHVRDLLRLLNEKNEF--------TK----EDIL  271 (423)
T ss_pred             ccceeeecCCCCHHHHHHHHhhCCCCceeeecC-Chh----HhhhhhhHHHHHHHhhccCcc--------cH----hHHH
Confidence            456788999999999999999999999999953 223    599999999999998765321        10    1111


Q ss_pred             ccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHhc
Q 014342          338 TWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  399 (426)
Q Consensus       338 ~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~~  399 (426)
                      ...        .++..+++.+++.+-+..|.+++-+---||||=|.+.|++|..||+.-+-.
T Consensus       272 ~~a--------~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i~GLVTLEDIlEEIVG  325 (423)
T COG4536         272 RAA--------DEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDIQGLVTLEDILEEIVG  325 (423)
T ss_pred             HHh--------cCCeecCCCCcHHHHHHHHHHhcceEEEEEeccCcEEeeeeHHHHHHHHhc
Confidence            111        255679999999999999999888878899999999999999999975543

>cd02860 Pullulanase_N_term Pullulanase domain N-terminus

Probab=97.70  E-value=0.00011  Score=59.45  Aligned_cols=65  Identities=20%  Similarity=0.218  Sum_probs=49.0

Q ss_pred             EEEE-ecCCCceEEEEeccCCCC-----CCCCCCCCCCCCCeEEEEEe-cCCceEEEEEEEcCe-----eecCCCCCeee
Q 014342           23 VRFI-WPNGGRRVSLSGSFTRWS-----EPMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDGE-----WRHDENQPHVS   90 (426)
Q Consensus        23 v~f~-~~~~~~~V~l~Gsf~~W~-----~~~~m~~~~~~~~~~~~~~~-L~~g~y~ykFiVDg~-----w~~d~~~p~~~   90 (426)
                      ++|+ |...|++|.|+. |++|.     ..++|.+.+  +|.|++.++ +.+|. .|+|.|+|.     ...||......
T Consensus        10 ~~F~vwAP~A~~V~L~l-~~~~~~~~~~~~~~m~~~~--~gvw~~~v~~~~~g~-~Y~y~i~~~~~~~~~~~DPyA~~~~   85 (100)
T cd02860          10 TTFRLWAPTAQSVKLLL-YDKDDQDKVLETVQMKRGE--NGVWSVTLDGDLEGY-YYLYEVKVYKGETNEVVDPYAKALS   85 (100)
T ss_pred             EEEEEECCCCcEEEEEE-EcCCCCCCcceeEeeecCC--CCEEEEEeCCccCCc-EEEEEEEEeceEEEEEcCcccEeEe
Confidence            6775 666699999998 88886     346898743  899999987 45565 488888775     67888777655


Q ss_pred             C
Q 014342           91 G   91 (426)
Q Consensus        91 d   91 (426)
                      .
T Consensus        86 ~   86 (100)
T cd02860          86 A   86 (100)
T ss_pred             e
Confidence            3

Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain

Probab=97.67  E-value=0.00033  Score=57.06  Aligned_cols=68  Identities=28%  Similarity=0.501  Sum_probs=45.6

Q ss_pred             EEEE-ecCCCceEEEEeccCCCCC-CCCCCCCCCCCCeEEEEEe-cCCce-EEEEEEEc-Ce--eecCCCCCeeeC
Q 014342           23 VRFI-WPNGGRRVSLSGSFTRWSE-PMPMSPSEGCPAVFQIICR-LPPGH-HQYKFYVD-GE--WRHDENQPHVSG   91 (426)
Q Consensus        23 v~f~-~~~~~~~V~l~Gsf~~W~~-~~~m~~~~~~~~~~~~~~~-L~~g~-y~ykFiVD-g~--w~~d~~~p~~~d   91 (426)
                      ++|+ |...|++|.|+++|++|.. ..+|.+.+ ..|.|.+.++ +++|. |.|++..+ |.  .+.||....++.
T Consensus        23 ~~frv~aP~A~~V~l~~~~~~~~~~~~~m~~~~-~~G~w~~~v~~~~~~~~Y~~~v~~~~g~~~~~~DPYa~~~~~   97 (106)
T cd02855          23 VRFAVWAPNARRVSVVGDFNGWDGRRHPMRRRG-DSGVWELFIPGLGEGELYKYEILGADGHLPLKADPYAFYSEL   97 (106)
T ss_pred             EEEEEECCCCCEEEEEEECCCCCCcceecEECC-CCCEEEEEECCCCCCCEEEEEEECCCCCEEEeeCCCceeeEe
Confidence            5676 5667999999999999965 35888754 3799999886 66664 55544443 33  345665544443

Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=97.65  E-value=0.00016  Score=74.50  Aligned_cols=154  Identities=13%  Similarity=0.108  Sum_probs=104.1

Q ss_pred             HHhccccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCC----CcEEEEeehHHHHHHHHHhc--cC-CC
Q 014342          150 SFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFK----GRFVGVLSALDFILILRELG--TN-GS  222 (426)
Q Consensus       150 ~~l~~~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~----~~~vGilT~~Dli~~l~~~~--~~-~~  222 (426)
                      ..+.+.++.|+|..  +++++..-..+...+++|...+-.+-||+|+..    +++.|+|-.+.++..++...  ++ ..
T Consensus       577 ~~mr~L~a~ev~~~--pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~  654 (762)
T KOG0474|consen  577 PYMRNLTAGEVMSK--PVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESRS  654 (762)
T ss_pred             hHhhhhhHhhhccC--CeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCcc
Confidence            45667889999977  899999999999999999999999999999643    47889888888777665322  11 11


Q ss_pred             CCChhhhcccchhhhHHHHH---------hhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCC
Q 014342          223 NLTEEELETHTISAWKVGKL---------QLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGP  293 (426)
Q Consensus       223 ~~~~~~l~~~~i~~~~~~~~---------~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~  293 (426)
                      ..........+.++..++..         ..++. -.|-.. .|...+.++.+++++..+..++..-|++++.|+.+  .
T Consensus       655 ~~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~-yvDl~p-~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~--~  730 (762)
T KOG0474|consen  655 TFDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEM-YVDLHP-FMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPK--T  730 (762)
T ss_pred             ccCcchhhcCCHHHhhhcCCchhhhhcchHhHhh-cccccc-ccCCCCcccCcccchHHHHHHHHHhcceeEEEecC--C
Confidence            11111111111111111000         00000 111111 24566789999999999999999999999999953  3


Q ss_pred             CCCcceEEEEecHHhHHHHH
Q 014342          294 AGSCQEILYLASLSDILKCI  313 (426)
Q Consensus       294 ~g~~~~lvGiit~~dil~~l  313 (426)
                      .    +++|++|++|+.++-
T Consensus       731 ~----~~~gilTR~D~~~~~  746 (762)
T KOG0474|consen  731 N----RVVGILTRKDLARYR  746 (762)
T ss_pred             C----ceeEEEehhhhhhHH
Confidence            3    489999999998764

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=97.65  E-value=0.00012  Score=77.66  Aligned_cols=52  Identities=29%  Similarity=0.412  Sum_probs=47.7

Q ss_pred             CCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHhc
Q 014342          348 GRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  399 (426)
Q Consensus       348 ~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~~  399 (426)
                      .++++++++++++.+|+++|.+++++.+||+|++|+++|+||..||.+....
T Consensus        75 ~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~Givt~~di~~~~~~  126 (546)
T PRK14869         75 IDKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEEGKLLGLVSLSDLARAYMD  126 (546)
T ss_pred             CCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHh
Confidence            3578899999999999999999999999999999999999999999986554

>cd05818 CBM20_water_dikinase Phosphoglucan water dikinase (also known as alpha-glucan water dikinase), N-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=97.58  E-value=0.00042  Score=55.26  Aligned_cols=53  Identities=25%  Similarity=0.389  Sum_probs=44.0

Q ss_pred             eEEEEEecC---CCceEEEEeccC---CCCCCCCCCCCCCCCCeEEEEEecCCc-eEEEEEEE
Q 014342           21 VPVRFIWPN---GGRRVSLSGSFT---RWSEPMPMSPSEGCPAVFQIICRLPPG-HHQYKFYV   76 (426)
Q Consensus        21 ~~v~f~~~~---~~~~V~l~Gsf~---~W~~~~~m~~~~~~~~~~~~~~~L~~g-~y~ykFiV   76 (426)
                      +.++|+..+   .|+.++|+|+-.   +|++..+|...   .+.|++.+.+|++ .++|||++
T Consensus         2 ~~v~F~~~~~~~~Gq~l~v~G~~~~LG~W~~~~~l~~~---~~~W~~~~~l~~~~~ieyKy~~   61 (92)
T cd05818           2 VKLQVRLDHQVKFGEHVAILGSTKELGSWKKKVPMNWT---ENGWVCDLELDGGELVEYKFVI   61 (92)
T ss_pred             EEEEEEEEEEcCCCCEEEEEeChHHHCCCCCCCccccC---CCCEEEEEEeCCCCcEEEEEEE
Confidence            567787765   489999999874   89987788764   4579999999998 69999998

This domain is found in the chloroplast-encoded phosphoglucan water dikinase, one of two enzymes involved in the phosphorylation of plant starches. In addition to the CBM20 domain, phosphoglucan water dikinase contains a C-terminal pyruvate binding domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=97.57  E-value=0.00012  Score=60.57  Aligned_cols=54  Identities=22%  Similarity=0.432  Sum_probs=47.1

Q ss_pred             ccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHH
Q 014342          155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFI  211 (426)
Q Consensus       155 ~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli  211 (426)
                      .++.|+|..  .+.+++.+.++.+|+++|.++++..+||+|+ +++++|++|..|+.
T Consensus        58 ~~v~dim~~--~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~-~~~l~Givt~~dl~  111 (113)
T cd04597          58 PRVRDVINR--KPVTARPNDPLREALNLMHEHNIRTLPVVDD-DGTPAGIITLLDLA  111 (113)
T ss_pred             hhHHHhcCC--CCCEECCcCcHHHHHHHHHHcCCCEEEEECC-CCeEEEEEEHHHhh
Confidence            567788865  5677899999999999999999999999995 47899999999975

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd05814 CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=97.52  E-value=0.00055  Score=57.41  Aligned_cols=56  Identities=25%  Similarity=0.525  Sum_probs=43.9

Q ss_pred             EEEEEecC----CCceEEEEec---cCCCCCC--CCCCCCCCCCCeEEEEEecCCc-eEEEEEEEc
Q 014342           22 PVRFIWPN----GGRRVSLSGS---FTRWSEP--MPMSPSEGCPAVFQIICRLPPG-HHQYKFYVD   77 (426)
Q Consensus        22 ~v~f~~~~----~~~~V~l~Gs---f~~W~~~--~~m~~~~~~~~~~~~~~~L~~g-~y~ykFiVD   77 (426)
                      .++|+..+    .++.|+|+|+   +.+|++.  .+|.+.....+.|++++.||++ .++|||++.
T Consensus         2 ~v~F~v~~~~~~~ge~v~v~G~~~~LG~W~~~~a~~l~~~~~~~~~W~~~v~lp~~~~veYkY~~~   67 (120)
T cd05814           2 RVTFRVFASELAPGEVVAVVGSLPVLGNWQPEKAVPLEKEDDDCNLWKASIELPRGVDFQYRYFVA   67 (120)
T ss_pred             eEEEEEeeccCCCCCEEEEEeChHHhCCCCHHhCeeCccCCCcCCccEEEEEECCCCeEEEEEEEE
Confidence            35666644    4899999999   8899854  5887752135789999999998 799999994

Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 contains a C-terminal glycerophosphoryl diester phosphodiesterase (GDPD) domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.

>cd05809 CBM20_beta_amylase Beta-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=97.45  E-value=0.00087  Score=54.20  Aligned_cols=57  Identities=23%  Similarity=0.410  Sum_probs=43.1

Q ss_pred             ceEEEEEecC----CCceEEEEe---ccCCCCCCC-CCCCCC-CCCCeEEEEEecCCc-eEEEEEEE
Q 014342           20 LVPVRFIWPN----GGRRVSLSG---SFTRWSEPM-PMSPSE-GCPAVFQIICRLPPG-HHQYKFYV   76 (426)
Q Consensus        20 ~~~v~f~~~~----~~~~V~l~G---sf~~W~~~~-~m~~~~-~~~~~~~~~~~L~~g-~y~ykFiV   76 (426)
                      .++|+|+...    .|++++|+|   .+.+|++.. +|.... ...+.|++++.||+| .++|||++
T Consensus         2 ~v~v~f~v~~~~t~~G~~v~v~Gs~~~LG~W~~~~~~~~~~~~~~~~~W~~~~~lp~~~~veyKyv~   68 (99)
T cd05809           2 PVPQTFVVKNVPTTIGETVYITGSRAELGNWDTKQYPIQLYYNSHSNDWRGTVHLPAGRNIEFKAIK   68 (99)
T ss_pred             ceEEEEEEcccccCCCCEEEEEeChHHhCCCChhhhhhccccCCCCCCEEEEEEecCCCcEEEEEEE
Confidence            4789999743    389999999   667998742 343221 235789999999998 59999998

Beta-amylase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 14, which hydrolyzes the alpha-1,4-glucosidic bonds of starch, yielding beta-maltose from the nonreducing end of the substrate. Beta-amylase is found in both plants and microorganisms, however the plant members lack a C-terminal CBM20 domain and are not included in this group. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1

>PLN02447 1,4-alpha-glucan-branching enzyme

Probab=97.36  E-value=0.0005  Score=74.24  Aligned_cols=64  Identities=23%  Similarity=0.426  Sum_probs=47.5

Q ss_pred             EEEEE-ecCCCceEEEEeccCCCCCC-CCCCCCCCCCCeEEEEEec-------CCceEEEEEEEc---Ce--eecCCCCC
Q 014342           22 PVRFI-WPNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICRL-------PPGHHQYKFYVD---GE--WRHDENQP   87 (426)
Q Consensus        22 ~v~f~-~~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~L-------~~g~y~ykFiVD---g~--w~~d~~~p   87 (426)
                      .++|+ |.+.|++|+|+|+||+|+.. .+|.+.+  .|+|++.++-       +.|. .|||.|.   |.  ++.||-..
T Consensus       115 g~~FrvWAP~A~~V~LvGdFN~W~~~~~~M~~~~--~GvWe~~ip~~~g~~~~~~G~-~Yky~i~~~~g~~~~r~dpya~  191 (758)
T PLN02447        115 GITYREWAPGAKAAALIGDFNNWNPNAHWMTKNE--FGVWEIFLPDADGSPAIPHGS-RVKIRMETPDGRWVDRIPAWIK  191 (758)
T ss_pred             CEEEEEECCCCCEEEEEEecCCCCCCccCceeCC--CCEEEEEECCccccccCCCCC-EEEEEEEeCCCcEEeecCchHh
Confidence            46676 77789999999999999875 5898865  7999999873       4453 6677763   54  46677654


Q ss_pred             e
Q 014342           88 H   88 (426)
Q Consensus        88 ~   88 (426)
                      .
T Consensus       192 ~  192 (758)
T PLN02447        192 Y  192 (758)
T ss_pred             e
Confidence            3

>PRK12568 glycogen branching enzyme; Provisional

Probab=97.34  E-value=0.00058  Score=73.58  Aligned_cols=65  Identities=26%  Similarity=0.595  Sum_probs=49.2

Q ss_pred             EEEEE-ecCCCceEEEEeccCCCCCC-CCCCCCCCCCCeEEEEEe-cCCceEEEEEEE---cCee--ecCCCCCee
Q 014342           22 PVRFI-WPNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICR-LPPGHHQYKFYV---DGEW--RHDENQPHV   89 (426)
Q Consensus        22 ~v~f~-~~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~-L~~g~y~ykFiV---Dg~w--~~d~~~p~~   89 (426)
                      -|+|+ |...|++|+|+|+||+|+.. .+|.+.  ..|+|++.++ +.+| ..|||.|   ||.+  ..||-....
T Consensus       139 Gv~FaVWAPnA~~VsVvGDFN~Wdg~~~pM~~~--~~GVWelfipg~~~G-~~YKYeI~~~~G~~~~k~DPYA~~~  211 (730)
T PRK12568        139 GVRFAVWAPHAQRVAVVGDFNGWDVRRHPMRQR--IGGFWELFLPRVEAG-ARYKYAITAADGRVLLKADPVARQT  211 (730)
T ss_pred             cEEEEEECCCCCEEEEEEecCCCCccceecccC--CCCEEEEEECCCCCC-CEEEEEEEcCCCeEeecCCCcceEe
Confidence            56786 56669999999999999874 589875  4899999985 6677 3566666   7865  467766544

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=97.34  E-value=0.00068  Score=45.44  Aligned_cols=47  Identities=30%  Similarity=0.574  Sum_probs=40.8

Q ss_pred             EEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHH
Q 014342          167 VTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILIL  214 (426)
Q Consensus       167 vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l  214 (426)
                      .++++.+.++.++.+.|.++++..+||++++ ++++|+++..|++..+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~g~i~~~~l~~~~   48 (49)
T smart00116        2 VVTVSPDTTLEEALELLREHGIRRLPVVDEE-GRLVGIVTRRDIIKAL   48 (49)
T ss_pred             ceEecCCCcHHHHHHHHHHhCCCcccEECCC-CeEEEEEEHHHHHHhh
Confidence            4567889999999999999999999999864 7899999999986543

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=97.33  E-value=0.0029  Score=65.59  Aligned_cols=134  Identities=13%  Similarity=0.137  Sum_probs=88.3

Q ss_pred             CceEeCCC-CCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCC---Ccccccccccccc
Q 014342          260 PLVQAGPY-DSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSS---SLPILQQPVSSIQ  335 (426)
Q Consensus       260 ~~v~v~~~-~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~---~~~~~~~~v~~l~  335 (426)
                      .++++..+ .++.|...+|.+...+.+||+-+ ++..   +++|.+.++++...+....+....   ....+..+.....
T Consensus       557 ~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~-~~sq---~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~~f~~~~~~~~  632 (696)
T KOG0475|consen  557 CLIVITQDSMTLEDLESLMEDTDFSGFPVVLS-EDSQ---RLVGFVLRRNLFLAILNARKIQSFIVTTSIYFNDPSPSAV  632 (696)
T ss_pred             hheeccccceeHHHHHHHHhhcccCCceEEEc-cccc---eeEEEEchHHHHHHHhhhccccccceecccccCCCCcccc
Confidence            35555555 79999999999999999999864 2333   799999999987766532211110   0001111111111


Q ss_pred             cccccc-ccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHh
Q 014342          336 LGTWVP-RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  398 (426)
Q Consensus       336 i~~~~~-~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~  398 (426)
                      -+...+ +....+...+.++...++...+++++.+-+++.+-|. ++|++.|+||+.|+++..+
T Consensus       633 ~~~~~~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~-~~G~l~Giitkkd~l~~~r  695 (696)
T KOG0475|consen  633 AGIPSRLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVT-KNGILLGIITKKDCLRHTR  695 (696)
T ss_pred             CCCCCCcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEc-cCCeeEeeeehHHHHHhhc
Confidence            000000 0111233566789999999999999999999999665 5899999999999998654

>cd05820 CBM20_novamyl Novamyl (also known as acarviose transferase, ATase, maltogenic alpha-amylase, glucan 1,4-alpha-maltohydrolase, and AcbD), C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=97.29  E-value=0.0023  Score=52.14  Aligned_cols=55  Identities=27%  Similarity=0.494  Sum_probs=44.0

Q ss_pred             ceEEEEEecC-----CCceEEEEeccC---CCCCCC-----CCCCCCCCCCeEEEEEecCCc-eEEEEEEE
Q 014342           20 LVPVRFIWPN-----GGRRVSLSGSFT---RWSEPM-----PMSPSEGCPAVFQIICRLPPG-HHQYKFYV   76 (426)
Q Consensus        20 ~~~v~f~~~~-----~~~~V~l~Gsf~---~W~~~~-----~m~~~~~~~~~~~~~~~L~~g-~y~ykFiV   76 (426)
                      .+||+|+...     .|++++|+|+-.   +|++..     +|...  ....|.+++.||.| .++|||++
T Consensus         2 ~~~v~f~~~~~~~t~~Ge~l~vvGs~~~LG~W~~~~~~a~~~l~~~--~~~~W~~~~~lp~~~~veyK~v~   70 (103)
T cd05820           2 QIPVIFTVQNTPETAPGEFLYLTGSVPELGNWSTSTDQAVGPLLCP--NWPDWFVVASVPAGTYIEFKFLK   70 (103)
T ss_pred             cccEEEEEeCCcCcCCCCEEEEEECcHHhCCCChhccccccccccC--CCCCEEEEEEcCCCCcEEEEEEE
Confidence            3789999863     378999999876   899732     66543  35789999999998 59999998

Novamyl has a five-domain structure similar to that of cyclodextrin glucanotransferase (CGTase). Novamyl has a substrate-binding surface with an open groove which can accommodate both cyclodextrins and linear substrates. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific reco

>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain

Probab=97.28  E-value=0.00088  Score=54.54  Aligned_cols=53  Identities=21%  Similarity=0.401  Sum_probs=40.6

Q ss_pred             EEEE-ecCCCceEEEEeccCCCC--CCCCCCCCCCCCCeEEEEEe-cCCceEEEEEEEcCe
Q 014342           23 VRFI-WPNGGRRVSLSGSFTRWS--EPMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDGE   79 (426)
Q Consensus        23 v~f~-~~~~~~~V~l~Gsf~~W~--~~~~m~~~~~~~~~~~~~~~-L~~g~y~ykFiVDg~   79 (426)
                      +.|+ |...|++|.|+. |++|.  ..++|.+.+  +|+|.+.++ +.+|. .|+|.|||.
T Consensus        11 ~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~~--~GvW~~~v~~~~~g~-~Y~y~i~g~   67 (103)
T cd02856          11 CNFAVHSENATRIELCL-FDEDGSETRLPLTEEY--GGVWHGFLPGIKAGQ-RYGFRVHGP   67 (103)
T ss_pred             eEEEEECCCCCEEEEEE-EeCCCCEEEEEccccc--CCEEEEEECCCCCCC-EEEEEECCc
Confidence            5675 666699999999 77665  246898754  799999984 56665 799999994

Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>cd05813 CBM20_genethonin_1 Genethonin-1, C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=97.16  E-value=0.0015  Score=52.39  Aligned_cols=54  Identities=20%  Similarity=0.409  Sum_probs=42.9

Q ss_pred             eEEEEEecC----CCceEEEEeccC---CCCCCCCCCCCCCCCCeEEEEEecCCce-EEEEEEE
Q 014342           21 VPVRFIWPN----GGRRVSLSGSFT---RWSEPMPMSPSEGCPAVFQIICRLPPGH-HQYKFYV   76 (426)
Q Consensus        21 ~~v~f~~~~----~~~~V~l~Gsf~---~W~~~~~m~~~~~~~~~~~~~~~L~~g~-y~ykFiV   76 (426)
                      ++++|+..+    +++.++|+|+=.   +|+...+|...+  .+.|++++.||++. ++|||++
T Consensus         1 v~v~F~v~~~t~~~~e~l~v~G~~~~LG~W~~~~~l~~~~--~~~W~~~v~lp~~~~ieYky~~   62 (95)
T cd05813           1 VNVTFRVHYITHSDAQLVAVTGDHEELGSWHSYIPLQYVK--DGFWSASVSLPVDTHVEWKFVL   62 (95)
T ss_pred             CeEEEEEEeeeCCCCeEEEEEcChHHHCCCCccccCcCCC--CCCEEEEEEecCCCcEEEEEEE
Confidence            456777643    357789999875   799878997654  57899999999985 9999998

Genethonin-1 is a human skeletal muscle protein with no known function. It contains a C-terminal CBM20 domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.

>PRK12313 glycogen branching enzyme; Provisional

Probab=97.13  E-value=0.0013  Score=70.96  Aligned_cols=67  Identities=21%  Similarity=0.282  Sum_probs=48.8

Q ss_pred             EEEEEe-cCCCceEEEEeccCCCCCC-CCCCCCCCCCCeEEEEEe-cCCc-eEEEEEEE-cCee--ecCCCCCeee
Q 014342           22 PVRFIW-PNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICR-LPPG-HHQYKFYV-DGEW--RHDENQPHVS   90 (426)
Q Consensus        22 ~v~f~~-~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~-L~~g-~y~ykFiV-Dg~w--~~d~~~p~~~   90 (426)
                      .++|+. .+.|++|+|+|+||+|.+. .+|.+..  .|+|.+.++ +++| .|.|++.. +|.|  ..||......
T Consensus        39 gv~Frv~AP~A~~V~v~gdfn~w~~~~~~m~~~~--~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~~~~~DPya~~~~  112 (633)
T PRK12313         39 GTYFRVWAPNAQAVSVVGDFNDWRGNAHPLVRRE--SGVWEGFIPGAKEGQLYKYHISRQDGYQVEKIDPFAFYFE  112 (633)
T ss_pred             cEEEEEECCCCCEEEEEEecCCCCcccccccccC--CCEEEEEeCCCCCCCEEEEEEECCCCeEEecCCCceEEEe
Confidence            578874 4569999999999999875 5898763  799999998 4455 57777654 5665  4566554443

>PRK14706 glycogen branching enzyme; Provisional

Probab=97.06  E-value=0.0013  Score=70.57  Aligned_cols=66  Identities=30%  Similarity=0.585  Sum_probs=48.6

Q ss_pred             EEEEE-ecCCCceEEEEeccCCCCCC-CCCCCCCCCCCeEEEEEec-CCceEEEEEEEcC---ee--ecCCCCCeee
Q 014342           22 PVRFI-WPNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICRL-PPGHHQYKFYVDG---EW--RHDENQPHVS   90 (426)
Q Consensus        22 ~v~f~-~~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~L-~~g~y~ykFiVDg---~w--~~d~~~p~~~   90 (426)
                      -++|+ |.+.|++|.|+|+||+|... .+|.+.+  .|.|++.++- .+| ..|||.|+|   .+  +.||-.....
T Consensus        39 Gv~FrvwAP~A~~V~Lvgdfn~w~~~~~pM~~~~--~GvW~~~vpg~~~g-~~Yky~I~~~~g~~~~~~DPYa~~~~  112 (639)
T PRK14706         39 GVRFAVWAPGAQHVSVVGDFNDWNGFDHPMQRLD--FGFWGAFVPGARPG-QRYKFRVTGAAGQTVDKMDPYGSFFE  112 (639)
T ss_pred             cEEEEEECCCCCEEEEEEecCCcccccccccccC--CCEEEEEECCCCCC-CEEEEEEECCCCCEEeccCcceEEEe
Confidence            46776 66679999999999999874 5898764  6999999864 455 468888854   33  5666655443

>PRK14705 glycogen branching enzyme; Provisional

Probab=97.04  E-value=0.0013  Score=74.55  Aligned_cols=65  Identities=25%  Similarity=0.562  Sum_probs=48.0

Q ss_pred             ceEEEEE-ecCCCceEEEEeccCCCCCC-CCCCCCCCCCCeEEEEEe-cCCceEEEEEEEc---Cee--ecCCCC
Q 014342           20 LVPVRFI-WPNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICR-LPPGHHQYKFYVD---GEW--RHDENQ   86 (426)
Q Consensus        20 ~~~v~f~-~~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~-L~~g~y~ykFiVD---g~w--~~d~~~   86 (426)
                      ..-++|+ |...|++|+|+|+||+|... .+|.+.. ..|+|++.++ +.+|. .|||.|.   |.|  ..||-.
T Consensus       637 ~~Gv~F~VWAP~A~~V~vvgdFN~w~~~~~~m~~~~-~~GvW~~fipg~~~G~-~Yky~i~~~~g~~~~k~DPyA  709 (1224)
T PRK14705        637 VDGVSFAVWAPNAQAVRVKGDFNGWDGREHSMRSLG-SSGVWELFIPGVVAGA-CYKFEILTKAGQWVEKADPLA  709 (1224)
T ss_pred             CCeEEEEEECCCCCEEEEEEEecCCCCCcccceECC-CCCEEEEEECCCCCCC-EEEEEEEcCCCcEEecCCccc
Confidence            3456776 66779999999999999875 5887643 3799999985 77885 6777774   544  455544

>cd05811 CBM20_glucoamylase Glucoamylase (glucan1,4-alpha-glucosidase), C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=97.03  E-value=0.0025  Score=52.12  Aligned_cols=58  Identities=26%  Similarity=0.504  Sum_probs=44.5

Q ss_pred             cceEEEEEecC---CCceEEEEeccC---CCCCC--CCCCCCC--CCCCeEEEEEecCCce-EEEEEEE
Q 014342           19 ILVPVRFIWPN---GGRRVSLSGSFT---RWSEP--MPMSPSE--GCPAVFQIICRLPPGH-HQYKFYV   76 (426)
Q Consensus        19 ~~~~v~f~~~~---~~~~V~l~Gsf~---~W~~~--~~m~~~~--~~~~~~~~~~~L~~g~-y~ykFiV   76 (426)
                      ..++++|...+   .|+.|+|+|+-.   +|++.  .+|....  ...+.|++++.||++. ++|||++
T Consensus         5 ~~v~V~F~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~t~~~~~W~~~v~lp~~~~veYKy~~   73 (106)
T cd05811           5 TTVAVTFNERVTTSYGENIKIVGSIPQLGNWDTSSAVALSASQYTSSNPLWSVTIPLPAGTSFEYKFIR   73 (106)
T ss_pred             CEEEEEEEEeeEcCCCCeEEEEeCcHHHCCCChhhCcccccccCccCCCcEEEEEEeCCCCcEEEEEEE
Confidence            45778888754   489999999875   79974  5786431  1247899999999984 9999996

Glucoamylases are inverting, exo-acting starch hydrolases that hydrolyze starch and related polysaccharides by releasing the nonreducing end glucose. They are mainly active on alpha-1,4-glycosidic bonds but also have some activity towards 1,6-glycosidic bonds occurring in natural oligosaccharides. The ability of glucoamylases to cleave 1-6-glycosidic binds is called "debranching activity" and is of importance in industrial applications, where complete degradation of starch to glucose is needed. Most glucoamylases are multidomain proteins containing an N-terminal catalytic domain, a C-terminal CBM20 domain, and a highly O-glycosylated linker region that connects the two. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also

>cd05817 CBM20_DSP Dual-specificity phosphatase (DSP), N-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=96.99  E-value=0.0024  Score=51.71  Aligned_cols=45  Identities=24%  Similarity=0.477  Sum_probs=37.6

Q ss_pred             CCceEEEEecc---CCCCCC--CCCCCCCCCCCeEEEEEecCCc-eEEEEEEE
Q 014342           30 GGRRVSLSGSF---TRWSEP--MPMSPSEGCPAVFQIICRLPPG-HHQYKFYV   76 (426)
Q Consensus        30 ~~~~V~l~Gsf---~~W~~~--~~m~~~~~~~~~~~~~~~L~~g-~y~ykFiV   76 (426)
                      .|+.++|+|+-   -+|++.  ++|...+  ...|++++.+|++ .++|||++
T Consensus        12 ~Ge~l~v~Gs~~~LG~W~~~~a~~m~~~~--~~~W~~~v~lp~~~~veYKY~i   62 (100)
T cd05817          12 FGEAVYISGNCNQLGNWNPSKAKRMQWNE--GDLWTVDVGIPESVYIEYKYFV   62 (100)
T ss_pred             CCCEEEEEeCcHHHCCCCccccCcccCCC--CCCEEEEEEECCCCcEEEEEEE
Confidence            48999999994   589964  5787654  5789999999987 59999998

This CBM20 domain is located at the N-terminus of a protein tyrosine phosphatase of unknown function found in slime molds and ciliated protozoans. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.

>PRK05402 glycogen branching enzyme; Provisional

Probab=96.98  E-value=0.0019  Score=70.57  Aligned_cols=66  Identities=27%  Similarity=0.459  Sum_probs=47.3

Q ss_pred             EEEEEe-cCCCceEEEEeccCCCCCC-CCCCCCCCCCCeEEEEEe-cCCc-eEEEEEEEc-Cee--ecCCCCCe
Q 014342           22 PVRFIW-PNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICR-LPPG-HHQYKFYVD-GEW--RHDENQPH   88 (426)
Q Consensus        22 ~v~f~~-~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~-L~~g-~y~ykFiVD-g~w--~~d~~~p~   88 (426)
                      .++|+. ...|++|.|+|+||+|... .+|.+.. ..|.|.+.++ +++| .|.|++..+ |.|  ..||-.-.
T Consensus       132 gv~FrvwAP~A~~V~l~gdfn~w~~~~~~m~~~~-~~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~~~~~DPYa~~  204 (726)
T PRK05402        132 GVRFAVWAPNARRVSVVGDFNGWDGRRHPMRLRG-ESGVWELFIPGLGEGELYKFEILTADGELLLKADPYAFA  204 (726)
T ss_pred             cEEEEEECCCCCEEEEEEEcCCCCCccccceEcC-CCCEEEEEeCCCCCCCEEEEEEeCCCCcEeecCCCceEE
Confidence            578885 4469999999999999864 5898762 3799999985 5666 577777664 454  45554433

>cd05816 CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 2

Probab=96.86  E-value=0.0038  Score=50.40  Aligned_cols=52  Identities=19%  Similarity=0.386  Sum_probs=41.0

Q ss_pred             EEEEecC----CCceEEEEecc---CCCCCC--CCCCCCCCCCCeEEEEEecCCc--eEEEEEEE
Q 014342           23 VRFIWPN----GGRRVSLSGSF---TRWSEP--MPMSPSEGCPAVFQIICRLPPG--HHQYKFYV   76 (426)
Q Consensus        23 v~f~~~~----~~~~V~l~Gsf---~~W~~~--~~m~~~~~~~~~~~~~~~L~~g--~y~ykFiV   76 (426)
                      |+|+...    .++.++|+|+-   .+|++.  ++|....  ...|++.+.+|++  .++|||++
T Consensus         2 v~f~v~~~~~~~Ge~v~i~Gs~~~LG~W~~~~a~~l~~~~--~~~W~~~v~~p~~~~~ieYKyvi   64 (99)
T cd05816           2 VQFKILCPYVPKGQSVYVTGSSPELGNWDPQKALKLSDVG--FPIWEADIDISKDSFPFEYKYII   64 (99)
T ss_pred             EEEEEEcCccCCCCEEEEEEChHHhCCCCccccccCCCCC--CCcEEEEEEeCCCCccEEEEEEE
Confidence            4566543    48999999986   489964  5888754  6789999999986  59999998

DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal CBM20 domains. Included in this group are PDE2-like proteins from Dictyostelium, Entamoeba, and Bacteroides. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in star

>cd05807 CBM20_CGTase CGTase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=96.85  E-value=0.0063  Score=49.31  Aligned_cols=57  Identities=25%  Similarity=0.303  Sum_probs=42.5

Q ss_pred             ceEEEEEecC----CCceEEEEeccC---CCCCCC--CCCCC--CCCCCeEEEEEecCCc-eEEEEEEE
Q 014342           20 LVPVRFIWPN----GGRRVSLSGSFT---RWSEPM--PMSPS--EGCPAVFQIICRLPPG-HHQYKFYV   76 (426)
Q Consensus        20 ~~~v~f~~~~----~~~~V~l~Gsf~---~W~~~~--~m~~~--~~~~~~~~~~~~L~~g-~y~ykFiV   76 (426)
                      .++++|....    .|++++|+|+-.   +|++..  .|...  ......|.+++.||.| .++|||++
T Consensus         2 ~v~v~f~v~~~~t~~Gq~l~v~Gs~~~LG~W~~~~a~~~~~~~~~~~~~~W~~~~~lp~~~~~eyK~~~   70 (101)
T cd05807           2 QVSVRFVVNNATTQLGENVYLVGNVHELGNWDPSKAIGPFFNQVVYQYPNWYYDVSVPAGTTIEFKFIK   70 (101)
T ss_pred             cEEEEEEEeccccCCCCEEEEEECHHHHCCCChHHccccccccCCCcCCcEEEEEEcCCCCcEEEEEEE
Confidence            4788898752    389999999876   899743  23211  1235689999999998 59999998

CGTase, also known as cyclodextrin glycosyltransferase and cyclodextrin glucanotransferase, catalyzes the formation of various cyclodextrins (alpha-1,4-glucans) from starch. CGTase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13 and an IPT domain of unknown function. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific

>cd05467 CBM20 The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase)

Probab=96.77  E-value=0.0049  Score=49.20  Aligned_cols=46  Identities=24%  Similarity=0.472  Sum_probs=38.1

Q ss_pred             CCceEEEEeccC---CCCCC--CCCCCCCCCCCeEEEEEecCC--c-eEEEEEEE
Q 014342           30 GGRRVSLSGSFT---RWSEP--MPMSPSEGCPAVFQIICRLPP--G-HHQYKFYV   76 (426)
Q Consensus        30 ~~~~V~l~Gsf~---~W~~~--~~m~~~~~~~~~~~~~~~L~~--g-~y~ykFiV   76 (426)
                      .|+.++|+|+..   +|++.  ++|...+ ..+.|++.+.+|+  | .++|||++
T Consensus        12 ~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~-~~~~W~~~v~~~~~~~~~~~yKy~~   65 (96)
T cd05467          12 FGQSVYVVGSHPELGNWDPAKALRLNTSN-SYPLWTGEIPLPAPEGQVIEYKYVI   65 (96)
T ss_pred             CCCEEEEEeCcHHhCCcChhcCccccCCC-CCCcEEEEEEecCCCCCeEEEEEEE
Confidence            589999999986   89863  5887653 2578999999999  7 69999998

CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.

>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain

Probab=96.71  E-value=0.0066  Score=47.47  Aligned_cols=62  Identities=23%  Similarity=0.359  Sum_probs=45.1

Q ss_pred             EEEE-ecCCCceEEEEeccCCCCCCCCCCCCCCCCCeEEEEEecCCceEEEEEEEc-CeeecCCCCCeee
Q 014342           23 VRFI-WPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVD-GEWRHDENQPHVS   90 (426)
Q Consensus        23 v~f~-~~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~L~~g~y~ykFiVD-g~w~~d~~~p~~~   90 (426)
                      ++|+ |...|++|.|+...  |. ..+|.+.+  +|.|++.+.--+|. .|+|.|+ |..+.||......
T Consensus        10 ~~F~vwAP~A~~V~l~l~~--~~-~~~m~~~~--~G~W~~~v~~~~g~-~Y~y~v~~~~~~~DP~a~~~~   73 (85)
T cd02853          10 TRFRLWAPDAKRVTLRLDD--GE-EIPMQRDG--DGWFEAEVPGAAGT-RYRYRLDDGTPVPDPASRFQP   73 (85)
T ss_pred             EEEEEeCCCCCEEEEEecC--CC-cccCccCC--CcEEEEEeCCCCCC-eEEEEECCCcCCCCCccccCC
Confidence            6677 56679999999643  54 47898764  79999998643665 4777776 5678998887643

MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=96.67  E-value=0.014  Score=60.68  Aligned_cols=136  Identities=9%  Similarity=0.083  Sum_probs=87.1

Q ss_pred             cEEEEcC-CccHHHHHHHHHHCCCCeeeee-eCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHh
Q 014342          166 KVTALDV-NLAVKQAFHVLYEQGLPMVPLW-DDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQ  243 (426)
Q Consensus       166 ~vi~l~~-~~sv~~A~~~l~~~~i~slPV~-D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~  243 (426)
                      .++++.. +.++.+...+|.+......||+ ++++++++|+++.+|+...+.......+.....++  .-.+....... 
T Consensus       557 ~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~--~f~~~~~~~~~-  633 (696)
T KOG0475|consen  557 CLIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTSI--YFNDPSPSAVA-  633 (696)
T ss_pred             hheeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceeccc--ccCCCCccccC-
Confidence            3444444 4899999999999999999976 55678999999999987655432221111100000  00000000000 


Q ss_pred             hccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHH
Q 014342          244 LNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCI  313 (426)
Q Consensus       244 ~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l  313 (426)
                       +...+.+. ...+...++++...+++.-++.++.+-+++.+.|.    .+|   ++.|+||.+|++++.
T Consensus       634 -~~~~~~~l-k~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~----~~G---~l~Giitkkd~l~~~  694 (696)
T KOG0475|consen  634 -GIPSRLDL-KDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVT----KNG---ILLGIITKKDCLRHT  694 (696)
T ss_pred             -CCCCCcCc-eeeccCCcccccccCcHHHHHHHHHhhCceEEEEc----cCC---eeEeeeehHHHHHhh
Confidence             00011111 11244556889999999999999999999999987    357   799999999999864

>cd05810 CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrolase (alpha-MTH), C-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=96.60  E-value=0.0081  Score=48.33  Aligned_cols=54  Identities=22%  Similarity=0.408  Sum_probs=42.1

Q ss_pred             eEEEEEec-C---CCceEEEEeccC---CCCCC--CCCCCCCCCCCeEEEEEecCCc-eEEEEEEE
Q 014342           21 VPVRFIWP-N---GGRRVSLSGSFT---RWSEP--MPMSPSEGCPAVFQIICRLPPG-HHQYKFYV   76 (426)
Q Consensus        21 ~~v~f~~~-~---~~~~V~l~Gsf~---~W~~~--~~m~~~~~~~~~~~~~~~L~~g-~y~ykFiV   76 (426)
                      |+|+|... .   .++.++|+|+-.   +|++.  ++|...  ....|.+.+.||.| ..+|||++
T Consensus         1 v~v~f~~~~~~t~~Ge~l~v~Gs~~~LG~W~~~~a~~l~~~--~~~~W~~~v~lp~~~~veyKyv~   64 (97)
T cd05810           1 VSVTFSCNNGTTQLGQSVYVVGNVPQLGNWSPADAVKLDPT--AYPTWSGSISLPASTNVEWKCLK   64 (97)
T ss_pred             CeEEEEEeecccCCCCeEEEEEChHHhCCCChhhcccccCC--CCCeEEEEEEcCCCCeEEEEEEE
Confidence            46777743 2   489999999886   89964  577654  35789999999998 59999987

Alpha-MTH, also known as maltotetraose-forming exo-amylase or G4-amylase, is an exo-amylase found in bacteria that degrades starch from its non-reducing end. Most alpha-MTHs have, in addition to the C-terminal CBM20 domain, an N-terminal glycosyl hydrolase family 13 catalytic domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio

>cd02852 Isoamylase_N_term Isoamylase N-terminus domain

Probab=96.59  E-value=0.0055  Score=51.18  Aligned_cols=60  Identities=25%  Similarity=0.491  Sum_probs=43.9

Q ss_pred             EEEE-ecCCCceEEEEeccCCCC---C--CCCCCCCC-CCCCeEEEEEe-cCCceEEEEEEEcCeeecCC
Q 014342           23 VRFI-WPNGGRRVSLSGSFTRWS---E--PMPMSPSE-GCPAVFQIICR-LPPGHHQYKFYVDGEWRHDE   84 (426)
Q Consensus        23 v~f~-~~~~~~~V~l~Gsf~~W~---~--~~~m~~~~-~~~~~~~~~~~-L~~g~y~ykFiVDg~w~~d~   84 (426)
                      ++|+ |...|++|.|+. |++|.   +  .++|.+.+ +.+|+|++.++ +.+|. .|+|.|+|.|..++
T Consensus         9 ~~F~vwAP~A~~V~L~l-f~~~~~~~~~~~~~m~~~~~~~~gvW~~~v~~~~~g~-~Y~y~v~g~~~p~~   76 (119)
T cd02852           9 VNFSVYSSNATAVELLL-FDPGDGDEPALEIELDPSVNRTGDVWHVFVEGLKPGQ-LYGYRVDGPFEPEQ   76 (119)
T ss_pred             EEEEEECCCCCEEEEEE-EeCCCCCCceEEEeCcCcccccCCEEEEEECCCCCCC-EEEEEECCCCCCCc
Confidence            6675 666799999999 99886   2  34776542 23699999985 66776 79999999765443

Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase

Probab=96.38  E-value=0.0084  Score=63.37  Aligned_cols=61  Identities=23%  Similarity=0.328  Sum_probs=48.7

Q ss_pred             EEEE-ecCCCceEEEEeccCCCCCCCCCCCCCCCCCeEEEEEe-cCCceEEEEEEEcC-eeecCCCCCeee
Q 014342           23 VRFI-WPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDG-EWRHDENQPHVS   90 (426)
Q Consensus        23 v~f~-~~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~-L~~g~y~ykFiVDg-~w~~d~~~p~~~   90 (426)
                      |+|+ |...|++|.|++.   +. ..+|.+.+  +|+|+++++ +.+| +.|+|.||| ..+.||......
T Consensus         1 v~FrlwAP~A~~V~L~l~---~~-~~~m~k~~--~GvW~~~v~~~~~G-~~Y~y~v~g~~~v~DPya~~~~   64 (542)
T TIGR02402         1 VRFRLWAPTAASVKLRLN---GA-LHAMQRLG--DGWFEITVPPVGPG-DRYGYVLDDGTPVPDPASRRQP   64 (542)
T ss_pred             CEEEEECCCCCEEEEEeC---CC-EEeCeECC--CCEEEEEECCCCCC-CEEEEEEeeeEEecCccccccc
Confidence            4675 6667999999973   33 47898865  799999996 6778 789999999 678999888754

Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.

>PRK05402 glycogen branching enzyme; Provisional

Probab=96.18  E-value=0.0088  Score=65.51  Aligned_cols=63  Identities=8%  Similarity=-0.067  Sum_probs=44.8

Q ss_pred             EEEEE-ecCCCceEEEEeccCCCCCCCCCCCCCCCCCeEEEEEecCCce-EEEEEEEcCe--eecCCCC
Q 014342           22 PVRFI-WPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGH-HQYKFYVDGE--WRHDENQ   86 (426)
Q Consensus        22 ~v~f~-~~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~L~~g~-y~ykFiVDg~--w~~d~~~   86 (426)
                      -++|+ |.+.|++|+|+|+||+ ....+|.+.+ ..|.|++.+++..|. |+|...-||.  ...||..
T Consensus        29 g~~f~vwaP~A~~V~vvgdfn~-~~~~~m~~~~-~~G~w~~~ip~~~g~~YKy~i~~~g~~~~k~DPya   95 (726)
T PRK05402         29 GLVVRALLPGAEEVWVILPGGG-RKLAELERLH-PRGLFAGVLPRKGPFDYRLRVTWGGGEQLIDDPYR   95 (726)
T ss_pred             cEEEEEECCCCeEEEEEeecCC-CccccceEcC-CCceEEEEecCCCCCCeEEEEEeCCceeEeccccc
Confidence            45665 7778999999999997 3346898753 379999999977774 5444333885  4566643

>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase

Probab=96.15  E-value=0.012  Score=63.14  Aligned_cols=67  Identities=24%  Similarity=0.525  Sum_probs=48.6

Q ss_pred             EEEEE-ecCCCceEEEEeccCCCCCC-CCCCCCCCCCCeEEEEEe-cCCceEEEEEEEc---Ce--eecCCCCCeee
Q 014342           22 PVRFI-WPNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICR-LPPGHHQYKFYVD---GE--WRHDENQPHVS   90 (426)
Q Consensus        22 ~v~f~-~~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~-L~~g~y~ykFiVD---g~--w~~d~~~p~~~   90 (426)
                      .++|+ |.+.|++|.|+|+||+|... .+|.+.+ ..|+|++.++ ..+|. .|+|.|+   |.  ++.||-.....
T Consensus        29 g~~FrvwAP~A~~V~L~~dfn~w~~~~~~m~~~~-~~Gvw~~~i~~~~~g~-~Y~y~v~~~~g~~~~~~DPYA~~~~  103 (613)
T TIGR01515        29 GTRFCVWAPNAREVRVAGDFNYWDGREHPMRRRN-DNGIWELFIPGIGEGE-LYKYEIVTNNGEIRLKADPYAFYAE  103 (613)
T ss_pred             cEEEEEECCCCCEEEEEEecCCCCCceecceEec-CCCEEEEEeCCCCCCC-EEEEEEECCCCcEEEeCCCCEeeec
Confidence            56777 66679999999999999864 4887653 2699999986 35565 5777774   54  47787765443

A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.

>cd05806 CBM20_laforin Laforin protein tyrosine phosphatase, N-terminal CBM20 (carbohydrate-binding module, family 20) domain

Probab=95.76  E-value=0.12  Score=42.55  Aligned_cols=50  Identities=22%  Similarity=0.427  Sum_probs=37.7

Q ss_pred             ecCCCceEEEEeccC---CCCCC--CCCCCCC-----CCCCeEEEEEecCCc----eEEEEEEE
Q 014342           27 WPNGGRRVSLSGSFT---RWSEP--MPMSPSE-----GCPAVFQIICRLPPG----HHQYKFYV   76 (426)
Q Consensus        27 ~~~~~~~V~l~Gsf~---~W~~~--~~m~~~~-----~~~~~~~~~~~L~~g----~y~ykFiV   76 (426)
                      .-.++++++|+|+-.   +|++.  .+|....     .....|.+++.||++    .++|||+.
T Consensus        11 ~~~~gq~v~IvGsipeLG~Wd~~~Av~Ls~~~yt~~~~~~~~W~~~v~lp~~~~~~~~eYKfv~   74 (112)
T cd05806          11 FADRDTELLVLGSRPELGSWDPQRAVPMRPARKALSPQEPSLWLGEVELSEPGSEDTFWYKFLK   74 (112)
T ss_pred             ecCCCCEEEEEECchhcCCCCcccccccccccccccCCCCCEEEEEEEcCCCCcCceEEEEEEE
Confidence            334689999999864   89974  4676541     124579999999995    69999997

Laforin, encoded by the EPM2A gene, is a dual-specificity phosphatase that dephosphorylates complex carbohydrates. Mutations in the gene encoding laforin result in Lafora disease, a fatal autosomal recessive neurodegenerative disorder characterized by the presence of intracellular deposits of insoluble, abnormally branched, glycogen-like polymers, known as Lafora bodies, in neurons, muscle, liver, and other tissues. The molecular basis for the formation of these Lafora bodies is unknown. Laforin is one of the only phosphatases that contains a carbohydrate-binding module. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen

>cd05815 CBM20_DPE2_repeat1 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 1

Probab=95.67  E-value=0.024  Score=45.83  Aligned_cols=54  Identities=30%  Similarity=0.610  Sum_probs=39.4

Q ss_pred             EEEEecC---CCceEEEEeccC---CCCCC--CCCCCCC-CCCCeEEEEEecCCc-eEEEEEEE
Q 014342           23 VRFIWPN---GGRRVSLSGSFT---RWSEP--MPMSPSE-GCPAVFQIICRLPPG-HHQYKFYV   76 (426)
Q Consensus        23 v~f~~~~---~~~~V~l~Gsf~---~W~~~--~~m~~~~-~~~~~~~~~~~L~~g-~y~ykFiV   76 (426)
                      ++|.-.+   .|+.++|+|+-.   +|++.  .+|.... .....|++++.+|++ .++|||+|
T Consensus         2 l~f~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~~~~~~W~~~v~~~~~~~veYky~v   65 (101)
T cd05815           2 LSFKLPYYTQWGQSLLICGSDPLLGSWNVKKGLLLKPSHQGDVLVWSGSISVPPGFSSEYNYYV   65 (101)
T ss_pred             EEEEEEEEccCCCEEEEEcChHHcCCcChHhcEeeeecCCCCCCEEEEEEEeCCCCcEEEEEEE
Confidence            4555543   489999999875   79764  5785421 123489999999987 59999998

DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 starch binding domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal carbohydrate-binding domains. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabol

>PF11806 DUF3327: Domain of unknown function (DUF3327); InterPro: IPR021764 This entry represents the N-terminal domain of enterochelin esterase

Probab=95.52  E-value=0.13  Score=43.26  Aligned_cols=84  Identities=23%  Similarity=0.381  Sum_probs=55.6

Q ss_pred             eEEEEEec----CCCceEEEEeccCCCCC-----CCCCCCCCCCCCeEEEEEecCCc-eEEEEEEEcCe-----------
Q 014342           21 VPVRFIWP----NGGRRVSLSGSFTRWSE-----PMPMSPSEGCPAVFQIICRLPPG-HHQYKFYVDGE-----------   79 (426)
Q Consensus        21 ~~v~f~~~----~~~~~V~l~Gsf~~W~~-----~~~m~~~~~~~~~~~~~~~L~~g-~y~ykFiVDg~-----------   79 (426)
                      +.|||-|.    .....+.|.|+.|+++.     ...|.+-++ ..+|..++.||.+ +-.|+|+.+-.           
T Consensus         2 ~~VTFlWRdp~~~~~~~~~V~~~~ngvtD~~~~~~~~l~Rl~g-TDVW~~t~~lp~d~rgSY~~~p~~~~~~~~~r~~~r   80 (122)
T PF11806_consen    2 CLVTFLWRDPDEGASANVRVYGDINGVTDHHDPDPQSLQRLPG-TDVWYWTYRLPADWRGSYSFIPDVPDARGAQREWWR   80 (122)
T ss_dssp             -EEEEEEE-TSTTT----EEEEEETTTTCGGGT---BEEE-TT-SSEEEEEEEEETT-EEEEEEEEES-T-HHHHHHHHH
T ss_pred             cEEEEEEeCCCCCCCceeEEEEECCcccccccCChhhheeCCC-CceEEEEEEECcccEEEEEEEecCcccchhHHHHHH
Confidence            46899999    33577999999999853     246888764 6899999999997 68899996433           


Q ss_pred             -----eecCCCCCeee-CC---CCCeeeEEEeccCC
Q 014342           80 -----WRHDENQPHVS-GN---YGVVNCVYIAVPQP  106 (426)
Q Consensus        80 -----w~~d~~~p~~~-d~---~G~~nn~~~v~~~~  106 (426)
                           -+.||-||... ..   .|..-++++. .++
T Consensus        81 ~~l~~~~~DPlNp~~~~~~~~~~g~~~S~l~L-p~A  115 (122)
T PF11806_consen   81 AILAQAQADPLNPRPWPNGAQDRGNAASVLEL-PDA  115 (122)
T ss_dssp             HHGGG-B--TTSSSEEE-TT---SSEEEEEE--TTS
T ss_pred             HHHhccCCCCCCCCCCCCCccccccccCceeC-CCC
Confidence                 36799998654 33   4889999999 544

The activity of the enzyme has been characterised [, ]. Fes catalyses the hydrolysis of the 2,3-dihydroxy-N-benzoyl-L-serine trimer, enterochelin, forming 2,3-dihydroxybenzoylserine. It also catalyses hydrolysis of free enterobactin and ferric enterobactin. Upon hydrolysis of ferric enterobactin by Fes, released iron is probably reduced by a second enzyme. Enterochelin esterase represents a family of non-peptidase homologues belonging to the MEROPS peptidase family S9, clan SC. ; GO: 0005506 iron ion binding, 0008849 enterochelin esterase activity, 0006826 iron ion transport, 0005737 cytoplasm; PDB: 3MGA_B 3C87_B 3C8H_B 3C8D_A 2B20_A.

>TIGR02104 pulA_typeI pullulanase, type I

Probab=94.81  E-value=0.074  Score=57.15  Aligned_cols=65  Identities=18%  Similarity=0.268  Sum_probs=45.9

Q ss_pred             EEEE-ecCCCceEEEEeccCCCCC-----CCCCCCCCCCCCeEEEEEe-cCCce-EEEEEEEcCe--eecCCCCCeee
Q 014342           23 VRFI-WPNGGRRVSLSGSFTRWSE-----PMPMSPSEGCPAVFQIICR-LPPGH-HQYKFYVDGE--WRHDENQPHVS   90 (426)
Q Consensus        23 v~f~-~~~~~~~V~l~Gsf~~W~~-----~~~m~~~~~~~~~~~~~~~-L~~g~-y~ykFiVDg~--w~~d~~~p~~~   90 (426)
                      ++|+ |...|++|.|++ |++|..     .++|.+..  .|+|++.++ +.+|. |.|++..+|.  ++.||-.....
T Consensus        21 ~~F~vwaP~a~~V~l~~-~~~~~~~~~~~~~~m~~~~--~gvw~~~i~~~~~g~~Y~y~v~~~~~~~~~~DPya~~~~   95 (605)
T TIGR02104        21 TVFRVWAPTATEVELLL-YKSGEDGEPYKVVKMKRGE--NGVWSAVLEGDLHGYFYTYQVCINGKWRETVDPYAKAVT   95 (605)
T ss_pred             eEEEEECCCCCEEEEEE-EcCCCCCccceEEecccCC--CCEEEEEECCCCCCCEEEEEEEcCCCeEEEcCCCcceec
Confidence            6786 556699999998 888853     35888754  799999987 45563 4444444565  48888876543

Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=94.22  E-value=0.086  Score=53.22  Aligned_cols=47  Identities=13%  Similarity=0.220  Sum_probs=41.1

Q ss_pred             CeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHh
Q 014342          350 PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  398 (426)
Q Consensus       350 ~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~  398 (426)
                      .+.++++++++.+++..+.+.+.. +||+|+ |+++|+|++.+|+..+.
T Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~-~~~~g~~~~~~~~~~~~  380 (382)
T TIGR03415       334 APTVINPDTLMRDVLAARHRTGGA-ILLVEN-GRIVGVIGDDNIYHALL  380 (382)
T ss_pred             cCcccCCCCcHHHHHHHHhcCCCC-eEEeeC-CeEEEEEeHHHHHHHHh
Confidence            556789999999999999887764 889986 99999999999998664

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity

Probab=94.17  E-value=0.076  Score=41.76  Aligned_cols=61  Identities=23%  Similarity=0.480  Sum_probs=36.7

Q ss_pred             EEEEEecC------CCceEEEEeccCCCCCC--CCCCCCC--CCCCeEEEEEecCCceEEEEEEE-cC--eeec
Q 014342           22 PVRFIWPN------GGRRVSLSGSFTRWSEP--MPMSPSE--GCPAVFQIICRLPPGHHQYKFYV-DG--EWRH   82 (426)
Q Consensus        22 ~v~f~~~~------~~~~V~l~Gsf~~W~~~--~~m~~~~--~~~~~~~~~~~L~~g~y~ykFiV-Dg--~w~~   82 (426)
                      ++++.|..      ++.+|++.+.|++|+..  .+|.+..  ...+.|++++.+|...|+..|+- ||  .|-.
T Consensus         3 ~vtVyYn~~~~~l~g~~~v~~~~G~n~W~~~~~~~m~~~~~~~~~~~~~~tv~vP~~a~~~dfvF~dg~~~wDN   76 (87)
T PF03423_consen    3 TVTVYYNPSLTALSGAPNVHLHGGFNRWTHVPGFGMTKMCVPDEGGWWKATVDVPEDAYVMDFVFNDGAGNWDN   76 (87)
T ss_dssp             EEEEEE---E-SSS-S-EEEEEETTS-B-SSS-EE-EEESS---TTEEEEEEE--TTTSEEEEEEE-SSS-EES
T ss_pred             EEEEEEEeCCCCCCCCCcEEEEecCCCCCcCCCCCcceeeeeecCCEEEEEEEEcCCceEEEEEEcCCCCcEeC
Confidence            45555532      37889999999999975  3566542  12689999999999988888887 65  4633

A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.

>PLN02316 synthase/transferase

Probab=94.00  E-value=0.18  Score=56.79  Aligned_cols=53  Identities=17%  Similarity=0.245  Sum_probs=43.4

Q ss_pred             CceEEEEeccCCCCCC---CCCCCCCCCCCeEEEEEecCCceEEEEEEE-cCeeecC
Q 014342           31 GRRVSLSGSFTRWSEP---MPMSPSEGCPAVFQIICRLPPGHHQYKFYV-DGEWRHD   83 (426)
Q Consensus        31 ~~~V~l~Gsf~~W~~~---~~m~~~~~~~~~~~~~~~L~~g~y~ykFiV-Dg~w~~d   83 (426)
                      ..+|.|.|.||+|...   .+|.+.+..+++|.+++.+|++-|..-|+. ||.-.+|
T Consensus       170 ~~~v~i~~gfN~W~~~~f~~~~~k~~~~g~ww~~~v~Vp~~A~~ldfVf~~g~~~yD  226 (1036)
T PLN02316        170 EPDVLIMGAFNGWRWKSFTERLEKTELGGDWWSCKLHIPKEAYKMDFVFFNGQNVYD  226 (1036)
T ss_pred             CCceEEEeccccccccccceeccccccCCCeEEEEEecCccceEEEEEEeCCccccc
Confidence            5789999999999864   378777655789999999999999999997 7743333

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=93.88  E-value=0.11  Score=50.42  Aligned_cols=91  Identities=13%  Similarity=0.177  Sum_probs=68.2

Q ss_pred             CHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccccccccccccCCCCC
Q 014342          269 SLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANG  348 (426)
Q Consensus       269 sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~~~~~~~~~  348 (426)
                      .-..++..+.+.+.+.+-+++   ..+   +.+|+++..+..+..                    +             .
T Consensus       294 ~~~~al~~~~~~~~~~~~~~~---~~~---~~~g~v~~~~~~~~~--------------------~-------------~  334 (386)
T COG4175         294 GPRVALKLLRDEGREYGYAVD---RGN---KFVGVVSIDSLVKAA--------------------L-------------I  334 (386)
T ss_pred             ccchhhhhhhhccchhhHHHh---ccC---ceeeEEeccchhccc--------------------c-------------c
Confidence            344677778877777777773   233   588998887766540                    0             0


Q ss_pred             CCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHhc
Q 014342          349 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  399 (426)
Q Consensus       349 ~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~~  399 (426)
                      .++.++..++++.+.+..+.+... .+||||++|+++|+|++..++..+..
T Consensus       335 ~~~~~v~~d~~~~~~~~~~~~~~~-p~aVvde~~r~vG~i~~~~vl~aL~~  384 (386)
T COG4175         335 DDVLTVDADTPLSEILARIRQAPC-PVAVVDEDGRYVGIISRGELLEALAR  384 (386)
T ss_pred             ccccccCccchHHHHHHHHhcCCC-ceeEEcCCCcEEEEecHHHHHHHHhc
Confidence            255678899999999888877665 68999999999999999999987653

>PLN02950 4-alpha-glucanotransferase

Probab=93.67  E-value=0.44  Score=53.31  Aligned_cols=61  Identities=26%  Similarity=0.469  Sum_probs=45.8

Q ss_pred             CCCcceEEEEEecC---CCceEEEEeccC---CCCCC--CCCCCCC-CCCCeEEEEEecCCc-eEEEEEEE
Q 014342           16 VGSILVPVRFIWPN---GGRRVSLSGSFT---RWSEP--MPMSPSE-GCPAVFQIICRLPPG-HHQYKFYV   76 (426)
Q Consensus        16 ~~~~~~~v~f~~~~---~~~~V~l~Gsf~---~W~~~--~~m~~~~-~~~~~~~~~~~L~~g-~y~ykFiV   76 (426)
                      ..+..+.++|.-++   -|++|+|+|+-.   +|+..  .+|.... .....|++++.||+| ..+|||++
T Consensus         4 ~~~~~V~V~F~i~y~T~~GQ~l~VvGs~~~LG~Wd~~kA~~Ls~~~~~d~~~W~~~v~lp~~~~ieYKYv~   74 (909)
T PLN02950          4 KSLKSVTLSFRIPYYTQWGQSLLVCGSEPLLGSWNVKKGLLLSPVHQGDELVWEGSVSVPEGFSCEYSYYV   74 (909)
T ss_pred             CCCCcEEEEEEeEEecCCCCeEEEEecchhcCCCCcccceecccccCCCCCeEEEEEEecCCCeEEEEEEE
Confidence            34556778888764   389999999985   79864  5786542 113489999999997 59999995

>PLN02950 4-alpha-glucanotransferase

Probab=93.55  E-value=0.49  Score=52.96  Aligned_cols=72  Identities=19%  Similarity=0.389  Sum_probs=53.2

Q ss_pred             CCCcceEEEEEecC----CCceEEEEeccC---CCCCC--CCCCCCCCCCCeEEEEEecCCc--eEEEEEEE---cC--e
Q 014342           16 VGSILVPVRFIWPN----GGRRVSLSGSFT---RWSEP--MPMSPSEGCPAVFQIICRLPPG--HHQYKFYV---DG--E   79 (426)
Q Consensus        16 ~~~~~~~v~f~~~~----~~~~V~l~Gsf~---~W~~~--~~m~~~~~~~~~~~~~~~L~~g--~y~ykFiV---Dg--~   79 (426)
                      .++..++|+|+...    .|++|+|+|+=.   +|++.  .+|....  ...|.+++.+|++  ..+|||++   +|  .
T Consensus       148 ~~~~~v~V~F~v~~~~~~~Gq~v~VvGs~~eLGnW~~~~a~~Ls~~~--~p~W~~~v~lp~~~~~~EYKyv~~~~~g~v~  225 (909)
T PLN02950        148 PAPDEIVVRFKIACPRLEEGTSVYVTGSIAQLGNWQVDDGLKLNYTG--DSIWEADCLVPKSDFPIKYKYALQTAEGLVS  225 (909)
T ss_pred             CCCCceeEEEEEecCccCCCCeEEEEechhhcCCCCcccccccccCC--CCcEEEEEEecCCCceEEEEEEEEcCCCceE
Confidence            45667889998654    489999999876   89964  4676543  6789999999988  49999998   44  3


Q ss_pred             eecCCCCCee
Q 014342           80 WRHDENQPHV   89 (426)
Q Consensus        80 w~~d~~~p~~   89 (426)
                      |-..++.-..
T Consensus       226 WE~g~NR~~~  235 (909)
T PLN02950        226 LELGVNRELS  235 (909)
T ss_pred             EeeCCCceee
Confidence            6555554333

>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX

Probab=92.32  E-value=0.33  Score=52.88  Aligned_cols=55  Identities=22%  Similarity=0.467  Sum_probs=40.2

Q ss_pred             EEEEE-ecCCCceEEEEeccCCCCC----CCCCCCCCCCCCeEEEEEe-cCCceEEEEEEEcCee
Q 014342           22 PVRFI-WPNGGRRVSLSGSFTRWSE----PMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDGEW   80 (426)
Q Consensus        22 ~v~f~-~~~~~~~V~l~Gsf~~W~~----~~~m~~~~~~~~~~~~~~~-L~~g~y~ykFiVDg~w   80 (426)
                      -+.|+ |...|++|.|+ -|++|..    .++|.+..  +|+|.+.++ +.+|. .|+|.|+|.|
T Consensus        15 g~~F~vwap~A~~V~L~-l~~~~~~~~~~~~~m~~~~--~gvW~~~v~~~~~g~-~Y~yrv~g~~   75 (688)
T TIGR02100        15 GVNFALFSANAEKVELC-LFDAQGEKEEARLPLPERT--DDIWHGYLPGAQPGQ-LYGYRVHGPY   75 (688)
T ss_pred             cEEEEEECCCCCEEEEE-EEcCCCCceeeEEecccCC--CCEEEEEECCCCCCC-EEEEEEeeee
Confidence            36777 45569999997 5665542    35787754  799999996 67776 4999999854

This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.

>PRK10439 enterobactin/ferric enterobactin esterase; Provisional

Probab=92.24  E-value=0.75  Score=47.01  Aligned_cols=85  Identities=25%  Similarity=0.337  Sum_probs=59.4

Q ss_pred             CCcceEEEEEecCC-C-------ceEEEE--eccC--CCCCCCCCCCCCCCCCeEEEEEecCCc-eEEEEEEEc---C--
Q 014342           17 GSILVPVRFIWPNG-G-------RRVSLS--GSFT--RWSEPMPMSPSEGCPAVFQIICRLPPG-HHQYKFYVD---G--   78 (426)
Q Consensus        17 ~~~~~~v~f~~~~~-~-------~~V~l~--Gsf~--~W~~~~~m~~~~~~~~~~~~~~~L~~g-~y~ykFiVD---g--   78 (426)
                      ....+.|||-|.++ +       +.|+|-  |..+  .+....+|.+-.+ ..+|..++.||.. +-.|+|++.   .  
T Consensus        35 ~~~~~~vTFlwr~~~~~~~~~~~~~v~~~~n~~tdh~~~~~~~~l~rl~~-tDvW~~~~~~p~~~r~sY~~~~~~~~~~~  113 (411)
T PRK10439         35 DDGMVRVTFWWRDPQGDEEHSTIRRVWIYINGVTDHHQNSQPQSLQRIAG-TDVWQWSTELSANWRGSYCFIPTERDDIF  113 (411)
T ss_pred             CCCcEEEEEEeeCCCCCcccccceeEEEeCCCCCCcCccCCcchhhccCC-CceEEEEEEECcccEEEEEEEeccccccc
Confidence            45678999999973 2       358873  2222  1333347888864 6899999999998 799999982   1  


Q ss_pred             -----------------------eeecCCCCCeee-CCCCCeeeEEEe
Q 014342           79 -----------------------EWRHDENQPHVS-GNYGVVNCVYIA  102 (426)
Q Consensus        79 -----------------------~w~~d~~~p~~~-d~~G~~nn~~~v  102 (426)
                                             .-+.||.||... +..|+..|++++
T Consensus       114 ~~~~~~~~~~~~~~r~~~~~l~~~~~~DP~N~~~~~~~~~~~~S~l~l  161 (411)
T PRK10439        114 SAFAPAPSPDRLELREGWRKLLPQAIADPLNPQSWRGGRGHAVSALEM  161 (411)
T ss_pred             cccccccchhHHHHHHHHHHhhccccCCCCCCCCCCCCCccccccccC
Confidence                                   114789888654 445655688888

>PLN02316 synthase/transferase

Probab=91.47  E-value=0.88  Score=51.43  Aligned_cols=74  Identities=14%  Similarity=0.233  Sum_probs=50.3

Q ss_pred             ceEEEEEecC------CCceEEEEeccCCCCCCC----CCCCCC-CCCCeEEEEEecCCceEEEEEEE-cCeeecCCCCC
Q 014342           20 LVPVRFIWPN------GGRRVSLSGSFTRWSEPM----PMSPSE-GCPAVFQIICRLPPGHHQYKFYV-DGEWRHDENQP   87 (426)
Q Consensus        20 ~~~v~f~~~~------~~~~V~l~Gsf~~W~~~~----~m~~~~-~~~~~~~~~~~L~~g~y~ykFiV-Dg~w~~d~~~p   87 (426)
                      --++++.|+.      ++.+|++.|.||+|+...    .|.+.+ ..++.|.+++.+|+.-|-.-|+. ||.    |...
T Consensus       328 G~~v~lyYN~~~~~L~~~~~v~i~gg~N~W~~~~~~~~~~~~~~~~~g~ww~a~v~vP~~A~~mDfVFsdg~----~~~~  403 (1036)
T PLN02316        328 GDTVKLYYNRSSGPLAHSTEIWIHGGYNNWIDGLSIVEKLVKSEEKDGDWWYAEVVVPERALVLDWVFADGP----PGNA  403 (1036)
T ss_pred             CCEEEEEECCCCCCCCCCCcEEEEEeEcCCCCCCcccceeecccCCCCCEEEEEEecCCCceEEEEEEecCC----cccc
Confidence            3466777762      368899999999999632    233333 23568999999999999999997 773    3344


Q ss_pred             eeeCCCCCee
Q 014342           88 HVSGNYGVVN   97 (426)
Q Consensus        88 ~~~d~~G~~n   97 (426)
                      ...|.+++..
T Consensus       404 ~~yDNn~~~D  413 (1036)
T PLN02316        404 RNYDNNGRQD  413 (1036)
T ss_pred             cccccCCCcc
Confidence            4444444333

>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive

Probab=91.28  E-value=0.53  Score=53.63  Aligned_cols=65  Identities=12%  Similarity=0.204  Sum_probs=46.9

Q ss_pred             EEEE-ecCCCceEEEEe-ccCCCCC---CCCCCCCCCCCCeEEEEEe-cCCc-----eEEEEEEEcC----eeecCCCCC
Q 014342           23 VRFI-WPNGGRRVSLSG-SFTRWSE---PMPMSPSEGCPAVFQIICR-LPPG-----HHQYKFYVDG----EWRHDENQP   87 (426)
Q Consensus        23 v~f~-~~~~~~~V~l~G-sf~~W~~---~~~m~~~~~~~~~~~~~~~-L~~g-----~y~ykFiVDg----~w~~d~~~p   87 (426)
                      ++|+ |...|++|.|++ .+++|..   .++|.+.+  .|+|++.++ +.+|     -+.|+|.|++    ..+.||...
T Consensus       329 v~F~vWAP~A~~V~L~lyd~~~~~~~~~~~~m~~~~--~GvW~v~v~~~~~G~~d~~G~~Y~Y~V~~~~~~~~~~DPYA~  406 (1111)
T TIGR02102       329 VTLKLWSPSADHVSVVLYDKDDQDKVVGTVELKKGD--RGVWEVQLTKENTGIDSLTGYYYHYEITRGGDKVLALDPYAK  406 (1111)
T ss_pred             EEEEEECCCCCEEEEEEEeCCCCCCceeeEecccCC--CCEEEEEECCcccCcccCCCceEEEEEECCCceEEEeChhhe
Confidence            6676 666799999998 4556654   46898754  799999987 4442     3788888876    457887765


Q ss_pred             ee
Q 014342           88 HV   89 (426)
Q Consensus        88 ~~   89 (426)
                      ..
T Consensus       407 al  408 (1111)
T TIGR02102       407 SL  408 (1111)
T ss_pred             EE
Confidence            43

Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=91.25  E-value=0.33  Score=45.79  Aligned_cols=109  Identities=22%  Similarity=0.271  Sum_probs=65.5

Q ss_pred             CCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccc--cCCC---cc-cccccccccccccccc
Q 014342          268 DSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKH--SSSS---LP-ILQQPVSSIQLGTWVP  341 (426)
Q Consensus       268 ~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~--~~~~---~~-~~~~~v~~l~i~~~~~  341 (426)
                      ..+.||+++     ..++.|++    .|   +++-.-+..+|++..+..|-.  .+.+   .. +...++.+.+..... 
T Consensus       194 HDidEA~kL-----adri~vm~----~G---~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~~~~~~~~~-  260 (309)
T COG1125         194 HDIDEALKL-----ADRIAVMD----AG---EIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVADAVRRGEP-  260 (309)
T ss_pred             cCHHHHHhh-----hceEEEec----CC---eEEEeCCHHHHHhCccHHHHHHHhccccccccccchhhHHHhhccccc-
Confidence            456788765     46888984    36   799999999888754433211  0000   00 011112221110000 


Q ss_pred             ccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHH
Q 014342          342 RIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITAL  396 (426)
Q Consensus       342 ~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~  396 (426)
                          ....+   +.......+++..+...+.+.+||||++|+++|.+|+.+|+..
T Consensus       261 ----~~~~~---~~~~~~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~~~  308 (309)
T COG1125         261 ----ADGEP---LLEGFVDRDALSDFLARGRSVLPVVDEDGRPLGTVTRADLLDE  308 (309)
T ss_pred             ----ccCCc---cccchhhHHHHHHHHhcCCceeEEECCCCcEeeEEEHHHHhhh
Confidence                00011   2333444558888899999999999999999999999998753

>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type

Probab=89.83  E-value=1.4  Score=49.11  Aligned_cols=67  Identities=21%  Similarity=0.285  Sum_probs=45.5

Q ss_pred             EEEEE-ecCCCceEEEEeccCCCC--CCCCCCCCCCCCCeEEEEEe-cCCceEEEEEEEc------Ce----eecCCCCC
Q 014342           22 PVRFI-WPNGGRRVSLSGSFTRWS--EPMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVD------GE----WRHDENQP   87 (426)
Q Consensus        22 ~v~f~-~~~~~~~V~l~Gsf~~W~--~~~~m~~~~~~~~~~~~~~~-L~~g~y~ykFiVD------g~----w~~d~~~p   87 (426)
                      -++|+ |...|++|.|++..++|.  ...+|.+.+ ..|+|++.++ ...|. .|+|.|+      |.    ...||...
T Consensus       136 gv~FrVWAPtA~~V~L~Ly~~~~~~~~~~~M~~~~-~~GVWsv~v~g~~~G~-~Y~Y~V~v~~p~~G~v~~~~v~DPYA~  213 (898)
T TIGR02103       136 GVTFRLWAPTAQQVKLHIYSASKKVETTLPMTRDS-TSGVWSAEGGSSWKGA-YYRYEVTVYHPSTGKVETYLVTDPYSV  213 (898)
T ss_pred             cEEEEEECCCCCEEEEEEEcCCCCccceEeCccCC-CCCEEEEEECcCCCCC-EeEEEEEEecCCCCeECCeEEeCcCcc
Confidence            46676 666799999997766664  236898753 3799999986 34454 3666664      53    36888776


Q ss_pred             eee
Q 014342           88 HVS   90 (426)
Q Consensus        88 ~~~   90 (426)
                      ...
T Consensus       214 als  216 (898)
T TIGR02103       214 SLS  216 (898)
T ss_pred             eEc
Confidence            553

Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=89.48  E-value=0.73  Score=44.89  Aligned_cols=136  Identities=17%  Similarity=0.255  Sum_probs=85.3

Q ss_pred             CCCCccc-cHHHHHH--HHHHHHHHhcc------ccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCc
Q 014342          130 PEGFAQY-SEADLQL--SRDRISSFLST------HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGR  200 (426)
Q Consensus       130 ~~~~~~~-~~~~l~~--~~~~~~~~l~~------~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~  200 (426)
                      .++..++ .++++-.  +-.=+++|...      .++.++|..-...+.-.....-..|.+.+.+.....+-+++ ..++
T Consensus       240 dG~ivQ~Gtp~eIl~~PAndYV~~Fv~~v~~~~VltA~~IM~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~-~~~~  318 (386)
T COG4175         240 DGEIVQVGTPEEILLNPANDYVRDFVRNVDRSRVLTAKDIMRRPDLLIRKTPGDGPRVALKLLRDEGREYGYAVD-RGNK  318 (386)
T ss_pred             CCeEEEeCCHHHHHcCccHHHHHHHHhcCChhheeeHHHhhcccccccccccccccchhhhhhhhccchhhHHHh-ccCc
Confidence            3444443 3344433  33344555543      35666776421222222222335788888888877777777 5567


Q ss_pred             EEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhC
Q 014342          201 FVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQN  280 (426)
Q Consensus       201 ~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~  280 (426)
                      ++|+++..+.+..                                          .+..++.++.+++++.+.+..+.+.
T Consensus       319 ~~g~v~~~~~~~~------------------------------------------~~~~~~~~v~~d~~~~~~~~~~~~~  356 (386)
T COG4175         319 FVGVVSIDSLVKA------------------------------------------ALIDDVLTVDADTPLSEILARIRQA  356 (386)
T ss_pred             eeeEEeccchhcc------------------------------------------cccccccccCccchHHHHHHHHhcC
Confidence            8999877654321                                          0134567788999999988887775


Q ss_pred             CCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHh
Q 014342          281 KVATVPIIHSTGPAGSCQEILYLASLSDILKCICR  315 (426)
Q Consensus       281 ~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~  315 (426)
                      . ..+||+|   +++   +++|+++...++.++..
T Consensus       357 ~-~p~aVvd---e~~---r~vG~i~~~~vl~aL~~  384 (386)
T COG4175         357 P-CPVAVVD---EDG---RYVGIISRGELLEALAR  384 (386)
T ss_pred             C-CceeEEc---CCC---cEEEEecHHHHHHHHhc
Confidence            4 5678885   345   79999999999998764

>PRK03705 glycogen debranching enzyme; Provisional

Probab=89.15  E-value=0.84  Score=49.46  Aligned_cols=55  Identities=22%  Similarity=0.441  Sum_probs=40.0

Q ss_pred             EEEEE-ecCCCceEEEEeccCCCC--CCCCCCCCCCCCCeEEEEEe-cCCceEEEEEEEcCee
Q 014342           22 PVRFI-WPNGGRRVSLSGSFTRWS--EPMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDGEW   80 (426)
Q Consensus        22 ~v~f~-~~~~~~~V~l~Gsf~~W~--~~~~m~~~~~~~~~~~~~~~-L~~g~y~ykFiVDg~w   80 (426)
                      -+.|+ |...|++|.|+. |++|.  ..++|.+..  +|+|++.++ +.+|. .|+|.|+|.|
T Consensus        20 g~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~~--~gvW~~~v~~~~~G~-~Y~yrv~g~~   78 (658)
T PRK03705         20 GVNFTLFSAHAERVELCV-FDENGQEQRYDLPARS--GDIWHGYLPGARPGL-RYGYRVHGPW   78 (658)
T ss_pred             CEEEEEECCCCCEEEEEE-EcCCCCeeeEeeeecc--CCEEEEEECCCCCCC-EEEEEEcccc
Confidence            36786 556699999997 77653  236787643  799999986 55564 5999998853

>PLN02960 alpha-amylase

Probab=89.14  E-value=0.47  Score=52.24  Aligned_cols=54  Identities=31%  Similarity=0.586  Sum_probs=39.7

Q ss_pred             EEEE-EecCCCceEEEEeccCCCCCCC-CCC-----CCCCCCCeEEEEEe--cCCce-------EEEEEEEc
Q 014342           22 PVRF-IWPNGGRRVSLSGSFTRWSEPM-PMS-----PSEGCPAVFQIICR--LPPGH-------HQYKFYVD   77 (426)
Q Consensus        22 ~v~f-~~~~~~~~V~l~Gsf~~W~~~~-~m~-----~~~~~~~~~~~~~~--L~~g~-------y~ykFiVD   77 (426)
                      -+.| .|..+|+.++|+|+||||.++. +|.     +++  =|+|.++++  |..|.       -||.|..|
T Consensus       129 ~~~~~~wap~a~~~~~~gdfn~w~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (897)
T PLN02960        129 RVDFMEWAPGARYCSLVGDFNNWSPTENRAREGYFGHDD--FGYWFIILEDKLREGEEPDELYFQEYNYVDD  198 (897)
T ss_pred             CeEEEEEcCCceeEEEeecccCCCcccchhhcccccccc--cceEEEEechhhhcCCCcchhhhhhhccccc
Confidence            4444 5999999999999999999864 444     554  589999984  66552       35666664

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=87.35  E-value=2.3  Score=42.98  Aligned_cols=47  Identities=11%  Similarity=0.192  Sum_probs=39.3

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHH
Q 014342          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCIC  314 (426)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~  314 (426)
                      .+.++.+++++.+++..+.+.+ +-+||++   + |   +++|+|+..++++.+.
T Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~---~-~---~~~g~~~~~~~~~~~~  380 (382)
T TIGR03415       334 APTVINPDTLMRDVLAARHRTG-GAILLVE---N-G---RIVGVIGDDNIYHALL  380 (382)
T ss_pred             cCcccCCCCcHHHHHHHHhcCC-CCeEEee---C-C---eEEEEEeHHHHHHHHh
Confidence            4567899999999999888866 5588884   2 6   7999999999998875

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=86.99  E-value=22  Score=33.95  Aligned_cols=135  Identities=13%  Similarity=0.157  Sum_probs=76.4

Q ss_pred             ccHHHHHHHHHHHHHHhccccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHH---
Q 014342          136 YSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL---  212 (426)
Q Consensus       136 ~~~~~l~~~~~~~~~~l~~~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~---  212 (426)
                      |.+..|+.+...+.+-++..           +|.+..|.  .||+++--     .+-|.+  .|+++=.=+..+++.   
T Consensus       169 I~R~~lQ~e~~~lq~~l~kT-----------ivfVTHDi--dEA~kLad-----ri~vm~--~G~i~Q~~~P~~il~~Pa  228 (309)
T COG1125         169 ITRKQLQEEIKELQKELGKT-----------IVFVTHDI--DEALKLAD-----RIAVMD--AGEIVQYDTPDEILANPA  228 (309)
T ss_pred             hhHHHHHHHHHHHHHHhCCE-----------EEEEecCH--HHHHhhhc-----eEEEec--CCeEEEeCCHHHHHhCcc
Confidence            78888888877777777643           56667775  89988642     355776  378888777655543   


Q ss_pred             --HHHHhccCCCCCChhhhcccchhhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEec
Q 014342          213 --ILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHS  290 (426)
Q Consensus       213 --~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~  290 (426)
                        ++..+.....    ..+................   ..++      .+   +.......+++..+...+...+||+| 
T Consensus       229 n~FV~~f~g~~~----~~~~~l~~~~~~~~~~~~~---~~~~------~~---~~~~~~~~~~ls~~~~~~~~~~~Vvd-  291 (309)
T COG1125         229 NDFVEDFFGESE----RGLRLLSLVSVADAVRRGE---PADG------EP---LLEGFVDRDALSDFLARGRSVLPVVD-  291 (309)
T ss_pred             HHHHHHHhcccc----ccccccchhhHHHhhcccc---cccC------Cc---cccchhhHHHHHHHHhcCCceeEEEC-
Confidence              2222221110    0000001111111110000   0011      11   12233445688888888999999995 


Q ss_pred             CCCCCCcceEEEEecHHhHHHH
Q 014342          291 TGPAGSCQEILYLASLSDILKC  312 (426)
Q Consensus       291 d~~~g~~~~lvGiit~~dil~~  312 (426)
                        ++|   +++|.+|+.+++..
T Consensus       292 --~~g---~~~G~vt~~~l~~~  308 (309)
T COG1125         292 --EDG---RPLGTVTRADLLDE  308 (309)
T ss_pred             --CCC---cEeeEEEHHHHhhh
Confidence              356   79999999998864

>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=81.86  E-value=1.9  Score=46.37  Aligned_cols=59  Identities=17%  Similarity=0.155  Sum_probs=50.6

Q ss_pred             CCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcC--CCcEEEEEeHHHHHHHHhcccc
Q 014342          344 GEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDD--NDSLLDIYSRSDITALAKDKAY  402 (426)
Q Consensus       344 ~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~--~g~lvGiis~~DI~~~~~~~~~  402 (426)
                      .+.|.+++..+..+++..|..+.+....++.+|+||.  +--++|.++|+.|..++..+.-
T Consensus       591 E~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~~~ig  651 (931)
T KOG0476|consen  591 EHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQRHIG  651 (931)
T ss_pred             eeeccccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHHhhcC
Confidence            3566789999999999999998888777999999996  3469999999999999887543

>cd02857 CD_pullulan_degrading_enzymes_N_term CD and pullulan-degrading enzymes N-terminus domain

Probab=80.96  E-value=5.9  Score=32.21  Aligned_cols=58  Identities=17%  Similarity=0.155  Sum_probs=38.6

Q ss_pred             cceEEEEEecC-CCceEEEEeccCC--CCC-CCCCCCCCCCC--CeEEEEEecCCceEEEEEEE
Q 014342           19 ILVPVRFIWPN-GGRRVSLSGSFTR--WSE-PMPMSPSEGCP--AVFQIICRLPPGHHQYKFYV   76 (426)
Q Consensus        19 ~~~~v~f~~~~-~~~~V~l~Gsf~~--W~~-~~~m~~~~~~~--~~~~~~~~L~~g~y~ykFiV   76 (426)
                      ..+.++++-+. +.++|.|.-.-+.  |.. ..+|.+....+  ..|+++++++.|.+.|.|.|
T Consensus        16 ~~v~irlr~~~~~v~~v~l~~~~~~~~~~~~~~~M~~~~~~~~~~~~~~~i~~~~~~~~Y~F~l   79 (116)
T cd02857          16 DTLHIRLRTKKGDVAKVYLRYGDPYDKGEEEEVPMRKDGSDELFDYWEATLPPPTGRLRYYFEL   79 (116)
T ss_pred             CEEEEEEEecCCCccEEEEEEECCCCCCCceEEEEEEeeeCCceeEEEEEEecCCcEEEEEEEE
Confidence            45555555543 4678888654332  222 46898765322  35999999888999999998

Members of this subgroup include: Cyclomaltodextrinase (CDase), maltogenic amylase, and neopullulanase all of which are capable of hydrolyzing all or two of the following three types of substrates: cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. The N-terminus of the CD and pullulan-degrading enzymes may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	426
2v8q_E	330	Crystal Structure Of The Regulatory Fragment Of Mam		2e-27
2qr1_G	334	Crystal Structure Of The Adenylate Sensor From Amp-		1e-17
2oox_G	333	Crystal Structure Of The Adenylate Sensor From Amp-		1e-17
3t4n_C	323	Structure Of The Regulatory Fragment Of Saccharomyc		7e-17
2qlv_C	315	Crystal Structure Of The Heterotrimer Core Of The S		8e-17
1z0m_A	96	The Glycogen-Binding Domain Of The Amp-Activated Pr		3e-14
1z0n_A	96	The Glycogen-Binding Domain Of The Amp-Activated Pr		6e-14
2f15_A	96	Glycogen-Binding Domain Of The Amp-Activated Protei		5e-13
2qlv_B	252	Crystal Structure Of The Heterotrimer Core Of The S		5e-11
2uv7_A	152	Crystal Structure Of A Cbs Domain Pair From The Reg		8e-07
2uv6_A	152	Crystal Structure Of A Cbs Domain Pair From The Reg		9e-07
2uv5_A	152	Crystal Structure Of A Cbs Domain Pair From The Reg		9e-07
3nme_A	294	Structure Of A Plant Phosphatase Length = 294		2e-06

>pdb|2V8Q|E Chain E, Crystal Structure Of The Regulatory Fragment Of Mammalian Ampk In Complexes With Amp Length = 330

Iteration: 1
 Score =  119 bits (299), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 81/254 (31%), Positives = 125/254 (49%), Gaps = 28/254 (11%)
Query: 149 SSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSAL 208
           ++F+ +H  Y+L+P S K+   D +L VK+AF  L   G+   PLWD  K  FVG+L+  
Sbjct: 29  TTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTIT 88
Query: 209 DFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYD 268
           DFI IL       + +   ELE H I  W+   LQ + K            PLV   P  
Sbjct: 89  DFINILHRY-YKSALVQIYELEEHKIETWREVYLQDSFK------------PLVCISPNA 135
Query: 269 SLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQ 328
           SL +    +++NK+  +P+I     +G+   IL    +   LK     F         + 
Sbjct: 136 SLFDAVSSLIRNKIHRLPVI--DPESGNTLYILTHKRILKFLKLFITEFPKPE----FMS 189
Query: 329 QPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIY 388
           + +  +Q+GT+      AN    AM+R T  +  AL + VQ  VS++P+VD+   ++DIY
Sbjct: 190 KSLEELQIGTY------AN---IAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIY 240
Query: 389 SRSDITALAKDKAY 402
           S+ D+  LA +K Y
Sbjct: 241 SKFDVINLAAEKTY 254

>pdb|2QR1|G Chain G, Crystal Structure Of The Adenylate Sensor From Amp-Activated Protein Kinase In Complex With Adp Length = 334

Iteration: 1
 Score = 87.8 bits (216), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/260 (23%), Positives = 124/260 (47%), Gaps = 23/260 (8%)
Query: 148 ISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSA 207
           I +F+ + T Y++LP S ++   DV L VK +  +L    +   PLWD    +F G+L+ 
Sbjct: 15  IQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTM 74
Query: 208 LDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPY 267
            DF+ +++      S+  E        +  ++ K +L   R+++      P   +   P 
Sbjct: 75  ADFVNVIKYY-YQSSSFPE--------AIAEIDKFRLLGLREVERKIGAIPPETIYVHPM 125
Query: 268 DSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPIL 327
            SL +  L + +++   +P+I   G  GS + I+ + +   ILK I  + K ++    +L
Sbjct: 126 HSLMDACLAMSKSRARRIPLIDVDGETGS-EMIVSVLTQYRILKFISMNCKETA----ML 180
Query: 328 QQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDI 387
           + P++ + +GTW            A       +   + +L + ++S++PIV+   +LL++
Sbjct: 181 RVPLNQMTIGTW---------SNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNV 231
Query: 388 YSRSDITALAKDKAYAQIHL 407
           Y   D+  L +D  Y+ + L
Sbjct: 232 YESVDVMHLIQDGDYSNLDL 251

>pdb|2OOX|G Chain G, Crystal Structure Of The Adenylate Sensor From Amp-activated Protein Kinase Complexed With Amp Length = 333

Iteration: 1
 Score = 87.8 bits (216), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/260 (23%), Positives = 124/260 (47%), Gaps = 23/260 (8%)
Query: 148 ISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSA 207
           I +F+ + T Y++LP S ++   DV L VK +  +L    +   PLWD    +F G+L+ 
Sbjct: 14  IQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTM 73
Query: 208 LDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPY 267
            DF+ +++      S+  E        +  ++ K +L   R+++      P   +   P 
Sbjct: 74  ADFVNVIKYY-YQSSSFPE--------AIAEIDKFRLLGLREVERKIGAIPPETIYVHPM 124
Query: 268 DSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPIL 327
            SL +  L + +++   +P+I   G  GS + I+ + +   ILK I  + K ++    +L
Sbjct: 125 HSLMDACLAMSKSRARRIPLIDVDGETGS-EMIVSVLTQYRILKFISMNCKETA----ML 179
Query: 328 QQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDI 387
           + P++ + +GTW            A       +   + +L + ++S++PIV+   +LL++
Sbjct: 180 RVPLNQMTIGTW---------SNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNV 230
Query: 388 YSRSDITALAKDKAYAQIHL 407
           Y   D+  L +D  Y+ + L
Sbjct: 231 YESVDVMHLIQDGDYSNLDL 250

>pdb|3T4N|C Chain C, Structure Of The Regulatory Fragment Of Saccharomyces Cerevisiae Ampk In Complex With Adp Length = 323

Iteration: 1
 Score = 85.1 bits (209), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 77/280 (27%), Positives = 131/280 (46%), Gaps = 54/280 (19%)
Query: 142 QLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRF 201
           QL+ + I  FL++ T Y++LP S ++  LD +L VK++ +VL +  +   PLWD    RF
Sbjct: 17  QLAVESIRKFLNSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKTSRF 76
Query: 202 VGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL----NLKR-----QMDG 252
            G+L+  DFI +++   +N       EL         V KLQL    +++R     Q+D 
Sbjct: 77  AGLLTTTDFINVIQYYFSNPDKF---EL---------VDKLQLDGLKDIERALGVDQLDT 124
Query: 253 NGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312
                 RPL +A          LK+L+++   +P+I         + ++ + +   ILK 
Sbjct: 125 ASIHPSRPLFEA---------CLKMLESRSGRIPLIDQDEETHR-EIVVSVLTQYRILKF 174
Query: 313 I---CR--HFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALL 367
           +   CR  HF         L+ P+  + +      I + N +   M  P   +   + +L
Sbjct: 175 VALNCRETHF---------LKIPIGDLNI------ITQDNMKSCQMTTPVIDV---IQML 216
Query: 368 VQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHL 407
            Q  VSS+PI+D+N  L+++Y   D+  L K   Y  + L
Sbjct: 217 TQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSL 256

>pdb|2QLV|C Chain C, Crystal Structure Of The Heterotrimer Core Of The S. Cerevisiae Ampk Homolog Snf1 Length = 315

Iteration: 1
 Score = 84.7 bits (208), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 77/280 (27%), Positives = 131/280 (46%), Gaps = 54/280 (19%)
Query: 142 QLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRF 201
           QL+ + I  FL++ T Y++LP S ++  LD +L VK++ +VL +  +   PLWD    RF
Sbjct: 10  QLAVESIRKFLNSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKTSRF 69
Query: 202 VGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL----NLKR-----QMDG 252
            G+L+  DFI +++   +N       EL         V KLQL    +++R     Q+D 
Sbjct: 70  AGLLTTTDFINVIQYYFSNPDKF---EL---------VDKLQLDGLKDIERALGVDQLDT 117
Query: 253 NGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC 312
                 RPL +A          LK+L+++   +P+I         + ++ + +   ILK 
Sbjct: 118 ASIHPSRPLFEA---------CLKMLESRSGRIPLIDQDEETHR-EIVVSVLTQYRILKF 167
Query: 313 I---CR--HFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALL 367
           +   CR  HF         L+ P+  + +      I + N +   M  P   +   + +L
Sbjct: 168 VALNCRETHF---------LKIPIGDLNI------ITQDNMKSCQMTTPVIDV---IQML 209
Query: 368 VQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHL 407
            Q  VSS+PI+D+N  L+++Y   D+  L K   Y  + L
Sbjct: 210 TQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSL 249

>pdb|1Z0M|A Chain A, The Glycogen-Binding Domain Of The Amp-Activated Protein Kinase Beta1 Subunit Length = 96

Iteration: 1
 Score = 76.6 bits (187), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 39/86 (45%), Positives = 52/86 (60%), Gaps = 5/86 (5%)
Query: 22  PVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWR 81
           P  F W  GG+ V LSGSF  WS+ +P++ S+     F  I  LP G HQYKF+VDG+W 
Sbjct: 12  PTVFRWTGGGKEVYLSGSFNNWSK-LPLTRSQNN---FVAILDLPEGEHQYKFFVDGQWT 67
Query: 82  HDENQPHVSGNYGVVNCVYIAVPQPD 107
           HD ++P V+   G VN + I V + D
Sbjct: 68  HDPSEPIVTSQLGTVNNI-IQVKKTD 92

>pdb|1Z0N|A Chain A, The Glycogen-Binding Domain Of The Amp-Activated Protein Kinase Length = 96

Iteration: 1
 Score = 75.5 bits (184), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 39/86 (45%), Positives = 51/86 (59%), Gaps = 5/86 (5%)
Query: 22  PVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWR 81
           P  F W  GG+ V LSGSF  WS+ +P + S+     F  I  LP G HQYKF+VDG+W 
Sbjct: 12  PTVFRWTGGGKEVYLSGSFNNWSK-LPXTRSQNN---FVAILDLPEGEHQYKFFVDGQWT 67
Query: 82  HDENQPHVSGNYGVVNCVYIAVPQPD 107
           HD ++P V+   G VN + I V + D
Sbjct: 68  HDPSEPIVTSQLGTVNNI-IQVKKTD 92

>pdb|2F15|A Chain A, Glycogen-Binding Domain Of The Amp-Activated Protein Kinase Beta2 Subunit Length = 96

Iteration: 1
 Score = 72.4 bits (176), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 33/76 (43%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 22 PVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWR 81
          P    W  GG+ V +SGSF  WS  +P+  S      F  I  LP G HQYKF+VDG+W 
Sbjct: 11 PTVIRWSEGGKEVFISGSFNNWSTKIPLIKSHN---DFVAILDLPEGEHQYKFFVDGQWV 67
Query: 82 HDENQPHVSGNYGVVN 97
          HD ++P V+   G +N
Sbjct: 68 HDPSEPVVTSQLGTIN 83

>pdb|2QLV|B Chain B, Crystal Structure Of The Heterotrimer Core Of The S. Cerevisiae Ampk Homolog Snf1 Length = 252

Iteration: 1
 Score = 65.5 bits (158), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 46/130 (35%), Positives = 66/130 (50%), Gaps = 9/130 (6%)
Query: 18  SILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVD 77
           S++VPV   W  GG +V ++GSFT+W + + + P       F +  RL PG H+++F VD
Sbjct: 1   SLMVPVEIRWQQGGSKVYVTGSFTKWRKMIGLIPDSDNNGSFHVKLRLLPGTHRFRFIVD 60
Query: 78  GEWRHDENQPHVSGNYG-VVNCVYIAVPQPDMVPNTISPETSGNMEVDDVVMRPEGFAQY 136
            E R  +  P  +   G  VN  YI V QP+  P     E   + E D   MRP    + 
Sbjct: 61  NELRVSDFLPTATDQMGNFVN--YIEVRQPEKNPTN---EKIRSKEADS--MRPPTSDRS 113
Query: 137 SEADLQLSRD 146
           S A LQ+ +D
Sbjct: 114 SIA-LQIGKD 122

>pdb|3NME|A Chain A, Structure Of A Plant Phosphatase Length = 294

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
Query: 29  NGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDGEWRHDENQP 87
            G  RV +SG    W + +P++  +G    F I+ R LP G  +YK+ +DGEW H+E +P
Sbjct: 179 KGFSRVEISGLDIGWGQRIPLTLGKGTG--FWILKRELPEGQFEYKYIIDGEWTHNEAEP 236
Query: 88  HVSGNY-GVVNCVYIAVPQPDMVPNTISPETS 118
            +  N  G  N     V  P  V  T     S
Sbjct: 237 FIGPNKDGHTNNYAKVVDDPTSVDGTTRERLS 268

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	426
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	3e-56
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	2e-05
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	3e-04
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	7e-48
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	4e-13
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	1e-47
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	4e-08
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	3e-06
2qlv_B	252	Protein SIP2, protein SPM2; heterotrimer, ATP-bind	3e-29
1z0n_A	96	5'-AMP-activated protein kinase, beta-1 subunit; b	9e-26
3nme_A	294	Ptpkis1 protein, SEX4 glucan phosphatase; dual spe	4e-25
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	4e-19
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	1e-10
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	7e-10
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	8e-18
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	3e-06
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	6e-06
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	1e-14
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	1e-05
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	1e-04
3ddj_A	296	CBS domain-containing protein; structural genomics	3e-13
3ddj_A	296	CBS domain-containing protein; structural genomics	3e-11
4aee_A	696	Alpha amylase, catalytic region; hydrolase, hypert	2e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-08
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	7e-07
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	7e-06
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	9e-05
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	1e-05
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	5e-04
1pbj_A	125	Hypothetical protein; structural genomics, domain,	3e-05
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	3e-05
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	3e-05
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	6e-05
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	2e-04
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	8e-05
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	1e-04
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	9e-04
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	1e-04
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	1e-04
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	2e-04
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	1e-04
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	2e-04
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	2e-04
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	2e-04
1pvm_A	184	Conserved hypothetical protein TA0289; structural	2e-04
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	3e-04
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	3e-04
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	4e-04
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	6e-04

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score =  187 bits (477), Expect = 3e-56
 Identities = 58/271 (21%), Positives = 121/271 (44%), Gaps = 25/271 (9%)

Query: 138 EADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDF 197
           +   + +   I +F+ + T Y++LP S ++   DV L VK +  +L    +   PLWD  
Sbjct: 5   QETQKGALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSE 64

Query: 198 KGRFVGVLSALDFILILRELGTNGSNLTE-EELETHTISAWKVGKLQLNLKRQMDGNGRP 256
             +F G+L+  DF+ +++    + S      E++   +   +  + ++            
Sbjct: 65  ANKFAGLLTMADFVNVIKYYYQSSSFPEAIAEIDKFRLLGLREVERKIGAI--------- 115

Query: 257 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRH 316
            P   +   P  SL +  L + +++   +P+I   G  GS + I+ + +   ILK I  +
Sbjct: 116 -PPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGS-EMIVSVLTQYRILKFISMN 173

Query: 317 FKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIP 376
            K       +L+ P++ + +GTW                    +   + +L + ++S++P
Sbjct: 174 CKE----TAMLRVPLNQMTIGTWSNLA---------TASMETKVYDVIKMLAEKNISAVP 220

Query: 377 IVDDNDSLLDIYSRSDITALAKDKAYAQIHL 407
           IV+   +LL++Y   D+  L +D  Y+ + L
Sbjct: 221 IVNSEGTLLNVYESVDVMHLIQDGDYSNLDL 251

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score = 45.6 bits (108), Expect = 2e-05
 Identities = 27/135 (20%), Positives = 47/135 (34%), Gaps = 18/135 (13%)

Query: 259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK 318
             L  A     + +V   + +  ++ VPI++S G       +L +    D++  I     
Sbjct: 193 SNLATASMETKVYDVIKMLAEKNISAVPIVNSEG------TLLNVYESVDVMHLI----- 241

Query: 319 HSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIV 378
                   L   V        + R    +G      R T  L      +  + V  + +V
Sbjct: 242 -QDGDYSNLDLSVGEA----LLKRPANFDG--VHTCRATDRLDGIFDAIKHSRVHRLFVV 294

Query: 379 DDNDSLLDIYSRSDI 393
           D+N  L  I S +DI
Sbjct: 295 DENLKLEGILSLADI 309

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score = 41.8 bits (98), Expect = 3e-04
 Identities = 21/142 (14%), Positives = 47/142 (33%), Gaps = 36/142 (25%)

Query: 176 VKQAFHVLYEQ---GLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETH 232
           V     +L E+    +P+V    + +G  + V  ++D + ++++   +  +L+  E    
Sbjct: 204 VYDVIKMLAEKNISAVPIV----NSEGTLLNVYESVDVMHLIQDGDYSNLDLSVGEALLK 259

Query: 233 TISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTG 292
                                       +      D L  +   I  ++V  + ++    
Sbjct: 260 R---------------------PANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENL 298

Query: 293 -PAGSCQEILYLASLSDILKCI 313
              G       + SL+DIL  I
Sbjct: 299 KLEG-------ILSLADILNYI 313

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score =  165 bits (420), Expect = 7e-48
 Identities = 81/288 (28%), Positives = 133/288 (46%), Gaps = 30/288 (10%)

Query: 128 MRPEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQG 187
             PE   ++S+   + +    ++F+ +H  Y+L+P S K+   D +L VK+AF  L   G
Sbjct: 10  PAPEN--EHSQETPESNSSVYTTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNG 67

Query: 188 LPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLK 247
           +   PLWD  K  FVG+L+  DFI IL     + + +   ELE H I  W+   LQ    
Sbjct: 68  VRAAPLWDSKKQSFVGMLTITDFINILHRYYKS-ALVQIYELEEHKIETWREVYLQD--- 123

Query: 248 RQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLS 307
                      +PLV   P  SL +    +++NK+  +P+I            LY+ +  
Sbjct: 124 ---------SFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDP-----ESGNTLYILTHK 169

Query: 308 DILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALL 367
            ILK +             + + +  +Q+GT+            AM+R T  +  AL + 
Sbjct: 170 RILKFLKLFITEFPKP-EFMSKSLEELQIGTY---------ANIAMVRTTTPVYVALGIF 219

Query: 368 VQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQV 415
           VQ  VS++P+VD+   ++DIYS+ D+  LA +K Y  + +      Q 
Sbjct: 220 VQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVSVTKALQH 267

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 68.8 bits (168), Expect = 4e-13
 Identities = 35/242 (14%), Positives = 82/242 (33%), Gaps = 37/242 (15%)

Query: 152 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFI 211
           + T     L      +  +  N ++  A   L    +  +P+ D   G  + +L+     
Sbjct: 113 IETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKR-- 170

Query: 212 LILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLK 271
            IL+ L    +   + E  + ++   ++G                    +        + 
Sbjct: 171 -ILKFLKLFITEFPKPEFMSKSLEELQIGT----------------YANIAMVRTTTPVY 213

Query: 272 EVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPV 331
                 +Q++V+ +P++   G       ++ + S  D++         +  +   L   V
Sbjct: 214 VALGIFVQHRVSALPVVDEKG------RVVDIYSKFDVINLA------AEKTYNNLDVSV 261

Query: 332 SSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRS 391
           +         +                +L + +  LV+A+V  + +VD++D +  I S S
Sbjct: 262 TK------ALQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLS 315

Query: 392 DI 393
           DI
Sbjct: 316 DI 317

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score =  165 bits (418), Expect = 1e-47
 Identities = 63/278 (22%), Positives = 122/278 (43%), Gaps = 26/278 (9%)

Query: 130 PEGFAQYSEADLQLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLP 189
            +   +    + QL+ + I  FL++ T Y++LP S ++  LD +L VK++ +VL +  + 
Sbjct: 5   TQDSQEKVSIEQQLAVESIRKFLNSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIV 64

Query: 190 MVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQ 249
             PLWD    RF G+L+  DFI +++   +N      E ++   +   K  +  L +   
Sbjct: 65  SAPLWDSKTSRFAGLLTTTDFINVIQYYFSNPDKF--ELVDKLQLDGLKDIERALGVD-- 120

Query: 250 MDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDI 309
                           P   L E  LK+L+++   +P+I         + ++ + +   I
Sbjct: 121 --------QLDTASIHPSRPLFEACLKMLESRSGRIPLIDQDEETHR-EIVVSVLTQYRI 171

Query: 310 LKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQ 369
           LK +  + + +      L+ P+  + + T                + T  +   + +L Q
Sbjct: 172 LKFVALNCRET----HFLKIPIGDLNIITQ---------DNMKSCQMTTPVIDVIQMLTQ 218

Query: 370 ADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHL 407
             VSS+PI+D+N  L+++Y   D+  L K   Y  + L
Sbjct: 219 GRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSL 256

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score = 53.4 bits (128), Expect = 4e-08
 Identities = 26/148 (17%), Positives = 49/148 (33%), Gaps = 18/148 (12%)

Query: 246 LKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLAS 305
           LK  +          +        + +V   + Q +V++VPII   G       ++ +  
Sbjct: 185 LKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENG------YLINVYE 238

Query: 306 LSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALA 365
             D+L  I             L   V        + R  +     +        L + + 
Sbjct: 239 AYDVLGLI------KGGIYNDLSLSVGEA-----LMRRSDDFEGVY-TCTKNDKLSTIMD 286

Query: 366 LLVQADVSSIPIVDDNDSLLDIYSRSDI 393
            + +A V    +VDD   L+ + + SDI
Sbjct: 287 NIRKARVHRFFVVDDVGRLVGVLTLSDI 314

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score = 48.0 bits (114), Expect = 3e-06
 Identities = 25/139 (17%), Positives = 45/139 (32%), Gaps = 30/139 (21%)

Query: 176 VKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTIS 235
           V     +L +  +  VP+ D+  G  + V  A D + +++    N  +L+  E       
Sbjct: 209 VIDVIQMLTQGRVSSVPIIDE-NGYLINVYEAYDVLGLIKGGIYNDLSLSVGEALMRR-- 265

Query: 236 AWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTG-PA 294
                                    +      D L  +   I + +V    ++   G   
Sbjct: 266 -------------------SDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLV 306

Query: 295 GSCQEILYLASLSDILKCI 313
           G       + +LSDILK I
Sbjct: 307 G-------VLTLSDILKYI 318

>2qlv_B Protein SIP2, protein SPM2; heterotrimer, ATP-binding, carbohydrate metabolism, kinase, membrane, nucleotide-binding, nucleus; 2.60A {Saccharomyces cerevisiae} SCOP: b.1.18.21 d.353.1.1 Length = 252

 Score =  113 bits (283), Expect = 3e-29
 Identities = 37/139 (26%), Positives = 57/139 (41%), Gaps = 1/139 (0%)

Query: 18  SILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVD 77
           S++VPV   W  GG +V ++GSFT+W + + + P       F +  RL PG H+++F VD
Sbjct: 1   SLMVPVEIRWQQGGSKVYVTGSFTKWRKMIGLIPDSDNNGSFHVKLRLLPGTHRFRFIVD 60

Query: 78  GEWRHDENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSGNMEVDDVVMRPEGFAQYS 137
            E R  +  P  +   G     YI V QP+  P      +     +          A   
Sbjct: 61  NELRVSDFLPTATDQMGNFVN-YIEVRQPEKNPTNEKIRSKEADSMRPPTSDRSSIALQI 119

Query: 138 EADLQLSRDRISSFLSTHT 156
             D     D  + F    +
Sbjct: 120 GKDPDDFGDGYTRFHEDLS 138

>1z0n_A 5'-AMP-activated protein kinase, beta-1 subunit; beta sandwich, sugar binding protein; HET: BCD; 1.49A {Rattus norvegicus} SCOP: b.1.18.21 PDB: 1z0m_A* 2f15_A Length = 96

 Score = 99.2 bits (247), Expect = 9e-26
 Identities = 41/98 (41%), Positives = 54/98 (55%), Gaps = 5/98 (5%)

Query: 11  ENSGVVGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHH 70
           E +    +   P  F W  GG+ V LSGSF  WS  +PM+ S+     F  I  LP G H
Sbjct: 1   EVNEKAPAQARPTVFRWTGGGKEVYLSGSFNNWS-KLPMTRSQN---NFVAILDLPEGEH 56

Query: 71  QYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDM 108
           QYKF+VDG+W HD ++P V+   G VN + I V + D 
Sbjct: 57  QYKFFVDGQWTHDPSEPIVTSQLGTVNNI-IQVKKTDF 93

>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity phosphatase, carbohydrate BIND hydrolase; 2.40A {Arabidopsis thaliana} Length = 294

 Score =  103 bits (257), Expect = 4e-25
 Identities = 34/137 (24%), Positives = 58/137 (42%), Gaps = 18/137 (13%)

Query: 25  FIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDE 84
            +   G  RV +SG    W + +P++  +G    + +   LP G  +YK+ +DGEW H+E
Sbjct: 175 TLKDKGFSRVEISGLDIGWGQRIPLTLGKG-TGFWILKRELPEGQFEYKYIIDGEWTHNE 233

Query: 85  NQPHVSGN-YGVVNCVYIAVPQPDMVPNTISPETSGNMEVDDVVMRPEGFAQYSEADLQL 143
            +P +  N  G  N  Y  V      P ++   T   +  +D  +  E            
Sbjct: 234 AEPFIGPNKDGHTN-NYAKVVDD---PTSVDGTTRERLSSEDPELLEE------------ 277

Query: 144 SRDRISSFLSTHTVYEL 160
            R ++  FL T +  E+
Sbjct: 278 ERSKLIQFLETCSEAEV 294

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 86.0 bits (213), Expect = 4e-19
 Identities = 27/239 (11%), Positives = 72/239 (30%), Gaps = 41/239 (17%)

Query: 164 SGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSN 223
           + K+  +     +++A   + E     +P+ +    + VG+++++D +  +         
Sbjct: 11  NKKIVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDFMGGGSKYNLI 70

Query: 224 LTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVA 283
             + E          V ++       M          ++       + E     L   V 
Sbjct: 71  REKHERNFLAAINEPVREI-------M-------EENVITLKENADIDEAIETFLTKNVG 116

Query: 284 TVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRI 343
             PI++         +++ L +  D+++ +      +      + + V            
Sbjct: 117 GAPIVNDEN------QLISLITERDVIRALLDKIDENEVIDDYITRDVIVA--------- 161

Query: 344 GEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAY 402
                       P   L      +V+     +P+V +   L+ I + +D   L      
Sbjct: 162 -----------TPGERLKDVARTMVRNGFRRLPVVSEGR-LVGIITSTDFIKLLGSDWA 208

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 60.9 bits (148), Expect = 1e-10
 Identities = 25/158 (15%), Positives = 64/158 (40%), Gaps = 10/158 (6%)

Query: 259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK 318
           + +V   P  ++++  + + +NK   +P++++        +++ + +  DI+  +     
Sbjct: 12  KKIVTVYPTTTIRKALMTMNENKYRRLPVVNAGN-----NKVVGIITSMDIVDFM----- 61

Query: 319 HSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIV 378
              S   ++++      L      + E        L+  A +  A+   +  +V   PIV
Sbjct: 62  GGGSKYNLIREKHERNFLAAINEPVREIMEENVITLKENADIDEAIETFLTKNVGGAPIV 121

Query: 379 DDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQVI 416
           +D + L+ + +  D+     DK      +D+     VI
Sbjct: 122 NDENQLISLITERDVIRALLDKIDENEVIDDYITRDVI 159

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 58.6 bits (142), Expect = 7e-10
 Identities = 32/227 (14%), Positives = 75/227 (33%), Gaps = 54/227 (23%)

Query: 176 VKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTIS 235
           + +A      + +   P+ +D + + + +++  D I                 L      
Sbjct: 103 IDEAIETFLTKNVGGAPIVND-ENQLISLITERDVI---------------RALLDKIDE 146

Query: 236 AWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAG 295
              +                   R ++ A P + LK+VA  +++N    +P++      G
Sbjct: 147 NEVIDDY--------------ITRDVIVATPGERLKDVARTMVRNGFRRLPVVSEGRLVG 192

Query: 296 SCQEILYLASLSDILKCICRHFK----HSSSSLPILQQPVSSIQLGTWVPRIGEANGRPF 351
               I+   + +D +K +   +      + +   I    +  I              R  
Sbjct: 193 ----II---TSTDFIKLLGSDWAFNHMQTGNVREITNVRMEEIMK------------RDV 233

Query: 352 AMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDI-TALA 397
              +    L     ++V  D+ ++P+VD+N  +  I +  D+    A
Sbjct: 234 ITAKEGDKLKKIAEIMVTNDIGALPVVDENLRIKGIITEKDVLKYFA 280

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144

 Score = 69.9 bits (172), Expect = 1e-14
 Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 9/83 (10%)

Query: 325 PILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSL 384
             L+ P+  + + T                + T  +   + +L Q  VSS+PI+D+N  L
Sbjct: 4   HFLKIPIGDLNIITQ---------DNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYL 54

Query: 385 LDIYSRSDITALAKDKAYAQIHL 407
           +++Y   D+  L K   Y  + L
Sbjct: 55  INVYEAYDVLGLIKGGIYNDLSL 77

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144

 Score = 43.7 bits (104), Expect = 1e-05
 Identities = 26/142 (18%), Positives = 45/142 (31%), Gaps = 32/142 (22%)

Query: 259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTG-PAGSCQEILYLASLSDILKCICRHF 317
             +        + +V   + Q +V++VPII   G        +       D+L  I    
Sbjct: 19  DNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLIN----VY---EAYDVLGLIKGGI 71

Query: 318 KHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAML------RPTASLGSALALLVQAD 371
            +  S                    +GEA  R                L + +  + +A 
Sbjct: 72  YNDLSL------------------SVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKAR 113

Query: 372 VSSIPIVDDNDSLLDIYSRSDI 393
           V    +VDD   L+ + + SDI
Sbjct: 114 VHRFFVVDDVGRLVGVLTLSDI 135

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144

 Score = 41.0 bits (97), Expect = 1e-04
 Identities = 24/142 (16%), Positives = 44/142 (30%), Gaps = 36/142 (25%)

Query: 176 VKQAFHVLYEQ---GLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETH 232
           V     +L +     +P++    D  G  + V  A D + +++    N  +L+  E    
Sbjct: 30  VIDVIQMLTQGRVSSVPII----DENGYLINVYEAYDVLGLIKGGIYNDLSLSVGEALMR 85

Query: 233 TISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTG 292
                                       +      D L  +   I + +V    ++   G
Sbjct: 86  R---------------------SDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVG 124

Query: 293 -PAGSCQEILYLASLSDILKCI 313
              G       + +LSDILK I
Sbjct: 125 RLVG-------VLTLSDILKYI 139

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 68.6 bits (168), Expect = 3e-13
 Identities = 25/244 (10%), Positives = 70/244 (28%), Gaps = 49/244 (20%)

Query: 164 SGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSN 223
                 L     +  AF  + E G+  + + ++   +  G+L+  D +  +        +
Sbjct: 27  IKNPPILSKEDRLGSAFKKINEGGIGRIIVANE---KIEGLLTTRDLLSTVESYCK--DS 81

Query: 224 LTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVA 283
            ++ +L  + IS   +          M           V              ++     
Sbjct: 82  CSQGDL--YHISTTPIIDY-------M-------TPNPVTVYNTSDEFTAINIMVTRNFG 125

Query: 284 TVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRI 343
           ++P++          + + + +  + L       +                        +
Sbjct: 126 SLPVVDIND------KPVGIVTEREFLLLYKDLDEIF---------------------PV 158

Query: 344 GEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT-ALAKDKAY 402
                     +     L  A+ L+++     +P++DD++ ++ I +  +    LAK    
Sbjct: 159 KVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAVDK 218

Query: 403 AQIH 406
               
Sbjct: 219 LDPD 222

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 62.9 bits (153), Expect = 3e-11
 Identities = 35/322 (10%), Positives = 90/322 (27%), Gaps = 79/322 (24%)

Query: 108 MVPN--TISPETSGNMEVDDVV--MRPEGFAQYSEADLQL-----SRD---RISSFLSTH 155
           M+ N   +S E      +      +   G  +   A+ ++     +RD    + S+    
Sbjct: 26  MIKNPPILSKEDR----LGSAFKKINEGGIGRIIVANEKIEGLLTTRDLLSTVESYCKDS 81

Query: 156 TVYELLPDSGKVTALDV----------NLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVL 205
                L        +D                 A +++  +    +P+ D    + VG++
Sbjct: 82  CSQGDLYHISTTPIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDI-NDKPVGIV 140

Query: 206 SALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAG 265
           +  +    L            +   +                             +    
Sbjct: 141 TERE---FLLLYKDLDEIFPVKVFMS---------------------------TKVQTIY 170

Query: 266 PYDSLKEVALKILQNKVATVPIIHSTG-PAGSCQEILYLASLSDILKCICRHFKHSSSSL 324
               L +    +L+     +P+I       G    I+   ++ + +K + +         
Sbjct: 171 KEVRLDQAVKLMLRRGFRRLPVIDDDNKVVG----IV---TVVNAIKQLAKAVDKLDPD- 222

Query: 325 PILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSL 384
               + V  +                   +   AS+  A A ++   + S+ I++ ++++
Sbjct: 223 YFYGKVVKDV------------MVTNLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTI 270

Query: 385 LDIYSRSDIT-ALAKDKAYAQI 405
             I +  D+  AL       + 
Sbjct: 271 RGIITERDLLIALHHILVMEKF 292

>4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable, cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus marinus} Length = 696

 Score = 65.2 bits (159), Expect = 2e-11
 Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 4/71 (5%)

Query: 12 NSGVVGSILVPVRFIWPNGGRRVSLSGSFTRWSE-PMPMSPSEGCPAVFQIICRLPPGHH 70
            G  G  +V     WP   + + L G FT      + +   E       +  +L PG +
Sbjct: 11 GKGRKGRYIVKFTRHWPQYAKNIYLIGEFTSLYPGFVKLRKIEE---QGIVYLKLWPGEY 67

Query: 71 QYKFYVDGEWR 81
           Y F +D ++ 
Sbjct: 68 GYGFQIDNDFE 78

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.1 bits (129), Expect = 5e-08
 Identities = 61/439 (13%), Positives = 120/439 (27%), Gaps = 123/439 (28%)

Query: 69  HHQYKFYVDGEWRH------DENQPHVSGNYGVVNCVYIAVPQPDMVPNTISPETSGNME 122
           HH   F   GE ++         +     N+   +C  +     DM  + +S E     E
Sbjct: 4   HHHMDFET-GEHQYQYKDILSVFEDAFVDNF---DCKDV----QDMPKSILSKE-----E 50

Query: 123 VDDVVMRPEGFAQYSEADLQLSRDRISSFLS--THTVYELLPDSGKVTALDVNLA-VKQA 179
           +D ++M  +         +  +     + LS     V + + +      L +N   +   
Sbjct: 51  IDHIIMSKD--------AVSGTLRLFWTLLSKQEEMVQKFVEE-----VLRINYKFLMSP 97

Query: 180 FHVLYEQ-GLPMV-------PLWDD---FKGRFVGVLSALDFILILRE------------ 216
                 Q  +           L++D   F    V   S L   L LR+            
Sbjct: 98  IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV---SRLQPYLKLRQALLELRPAKNVL 154

Query: 217 ----LGTNGSNLTEEELETHTISA-------W-KVGK---------LQLNLKRQMDGNG- 254
               LG+  + +  +   ++ +         W  +           +   L  Q+D N  
Sbjct: 155 IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT 214

Query: 255 ----RPCPRPLVQAGPYDSLKEV--------ALKILQNKVATVPIIHSTGPAGSCQEILY 302
                     L        L+ +         L +L N V      ++     SC+ IL 
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN-VQNAKAWNAFN--LSCK-ILL 270

Query: 303 L---ASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTAS 359
                 ++D L                L        L  ++             L     
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-------DCRPQDLPREVL 323

Query: 360 LGSALAL-LVQADVSSIPIVDDN------DSLLDIYSRSDITALAKD---KAYAQ--IHL 407
             +   L ++   +       DN      D L  I   S +  L      K + +  +  
Sbjct: 324 TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS-LNVLEPAEYRKMFDRLSVFP 382

Query: 408 DEMNI-HQVIARFLQNMLY 425
              +I   +++    +++ 
Sbjct: 383 PSAHIPTILLSLIWFDVIK 401

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana} Length = 180

 Score = 48.2 bits (115), Expect = 7e-07
 Identities = 27/155 (17%), Positives = 58/155 (37%), Gaps = 15/155 (9%)

Query: 259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK 318
           + L    P  S+ +    +++ KV  +P+I           ++ + S  D+L       +
Sbjct: 14  QNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNW------TLVGVVSDYDLLALDSISGR 67

Query: 319 HSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFA--M------LRPTASLGSALALLVQA 370
             + +        +          I +  G+     M      +R + +L  A  LL++ 
Sbjct: 68  SQNDTNLFPDVDSTWKTFNELQKLISKTYGKVVGDLMTPSPLVVRDSTNLEDAARLLLET 127

Query: 371 DVSSIPIVDDNDSLLDIYSRSDIT-ALAKDKAYAQ 404
               +P+VD +  L+ I +R ++  A  + K  A 
Sbjct: 128 KFRRLPVVDADGKLIGILTRGNVVRAALQIKRNAD 162

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 46.3 bits (110), Expect = 7e-06
 Identities = 34/253 (13%), Positives = 67/253 (26%), Gaps = 59/253 (23%)

Query: 167 VTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTE 226
                 N  +K+A  ++ E     V + D  KG+ VG+L+  D I            +  
Sbjct: 71  PVV-KENDTLKKAAKLMLEYDYRRVVVVDS-KGKPVGILTVGDIIRRYFAKSEKYKGVEI 128

Query: 227 EELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVP 286
           E                               R +        LK     +L +    +P
Sbjct: 129 EPYYQ---------------------------RYVSIVWEGTPLKAALKALLLSNSMALP 161

Query: 287 II----HSTG-------------PAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQ 329
           ++    +  G                     L  +S  + +             L +  +
Sbjct: 162 VVDSEGNLVGIVDETDLLRDSEIVRIMKSTELAASSEEEWILESHPTLLFEKFELQLPNK 221

Query: 330 PVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYS 389
           PV+ I                     P  ++      + +  +  +P++     L+ +  
Sbjct: 222 PVAEI-----------MTRDVIVA-TPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIR 269

Query: 390 RSDIT-ALAKDKA 401
             D+   L K KA
Sbjct: 270 DFDLLKVLVKSKA 282

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 43.2 bits (102), Expect = 9e-05
 Identities = 27/154 (17%), Positives = 57/154 (37%), Gaps = 11/154 (7%)

Query: 166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFI-LILRELGTNGSNL 224
            V+ +     +K A   L       +P+  D +G  VG++   D +           + L
Sbjct: 135 YVSIVWEGTPLKAALKALLLSNSMALPV-VDSEGNLVGIVDETDLLRDSEIVRIMKSTEL 193

Query: 225 TEEELETHTISAWKVGKLQLNLKRQMDGNGRP-CPRPLVQAGPYDSLKEVALKILQNKVA 283
                E   + +      +    +  +        R ++ A P+ ++ EVALK+ +  + 
Sbjct: 194 AASSEEEWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIE 253

Query: 284 TVPIIHSTG-PAGSCQEILYLASLSDILKCICRH 316
            +P+I   G   G    ++      D+LK + + 
Sbjct: 254 QLPVIRGEGDLIG----LIR---DFDLLKVLVKS 280

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls} Length = 128

 Score = 43.6 bits (103), Expect = 1e-05
 Identities = 23/132 (17%), Positives = 43/132 (32%), Gaps = 28/132 (21%)

Query: 268 DSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPIL 327
            S  + A ++  +  A  P++      G       +  LS +L+             P +
Sbjct: 22  GSTADAARRLAASGCACAPVLDGERYLG-------MVHLSRLLE--------GRKGWPTV 66

Query: 328 QQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDI 387
           ++ +    L                  RP   L   L  +  A  S +P+ D++     +
Sbjct: 67  KEKLGEELL------------ETVRSYRPGEQLFDNLISVAAAKCSVVPLADEDGRYEGV 114

Query: 388 YSRSDI-TALAK 398
            SR  I   LA+
Sbjct: 115 VSRKRILGFLAE 126

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls} Length = 128

 Score = 38.9 bits (91), Expect = 5e-04
 Identities = 11/69 (15%), Positives = 22/69 (31%), Gaps = 1/69 (1%)

Query: 349 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLD 408
             + +     S   A   L  +  +  P++D     L +   S +    K     +  L 
Sbjct: 13  TDYPVFTLGGSTADAARRLAASGCACAPVLDGE-RYLGMVHLSRLLEGRKGWPTVKEKLG 71

Query: 409 EMNIHQVIA 417
           E  +  V +
Sbjct: 72  EELLETVRS 80

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 Length = 125

 Score = 42.5 bits (101), Expect = 3e-05
 Identities = 22/143 (15%), Positives = 50/143 (34%), Gaps = 28/143 (19%)

Query: 259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK 318
             +       SL++V    ++N   +  ++      G    I+   +  D+L+ I     
Sbjct: 9   TDVDTIDITASLEDVLRNYVENAKGSSVVVKEGVRVG----IV---TTWDVLEAIAEGDD 61

Query: 319 HSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIV 378
            +                     ++ E   R    + P A++  A   +V+  V  + + 
Sbjct: 62  LAEV-------------------KVWEVMERDLVTISPRATIKEAAEKMVKNVVWRLLVE 102

Query: 379 DDNDSLLDIYSRSDIT-ALAKDK 400
           +D D ++ + S +DI  A    +
Sbjct: 103 ED-DEIIGVISATDILRAKMAKR 124

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 Length = 157

 Score = 43.0 bits (102), Expect = 3e-05
 Identities = 22/144 (15%), Positives = 51/144 (35%), Gaps = 14/144 (9%)

Query: 259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTG-PAGSCQEILYLASLSDILKCICRHF 317
                      ++E+  +IL++ V     +       G    ++    +  +LK    HF
Sbjct: 24  LKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVG----MI---PVMHLLKVSGFHF 76

Query: 318 KHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPI 377
                   +++  +  +          E    P   +     L  AL L++  ++  +P+
Sbjct: 77  FGFIPKEELIRSSMKRLIAKN----ASEIMLDP-VYVHMDTPLEEALKLMIDNNIQEMPV 131

Query: 378 VDDNDSLLDIYSRSDIT-ALAKDK 400
           VD+   ++   +  +I  AL K +
Sbjct: 132 VDEKGEIVGDLNSLEILLALWKGR 155

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} Length = 157

 Score = 42.8 bits (101), Expect = 3e-05
 Identities = 20/136 (14%), Positives = 50/136 (36%), Gaps = 24/136 (17%)

Query: 259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTG-PAGSCQEILYLASLSDILKCICRHF 317
             +    P + L    L + +   + +P++ ++    G    ++   S++ ++  I    
Sbjct: 21  DKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHG----LI---SMTMMMDAILGLE 73

Query: 318 KHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPI 377
           +     L  +              ++ E   R    LR   SL  A+ L+V      + +
Sbjct: 74  RIEFERLETM--------------KVEEVMNRNIPRLRLDDSLMKAVGLIVNHPF--VCV 117

Query: 378 VDDNDSLLDIYSRSDI 393
            +D+     I++R ++
Sbjct: 118 ENDDGYFAGIFTRREV 133

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} Length = 150

 Score = 42.0 bits (99), Expect = 6e-05
 Identities = 18/128 (14%), Positives = 45/128 (35%), Gaps = 22/128 (17%)

Query: 266 PYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLP 325
             + L+   L ++++  + +P++    P      ++   S + IL  I    +     L 
Sbjct: 32  IGNGLEHALLVLVKSGYSAIPVL---DPMYKLHGLI---STAMILDGILGLERIEFERLE 85

Query: 326 ILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLL 385
            +              ++ +   +   +L+   S   AL + +      I  V+++    
Sbjct: 86  EM--------------KVEQVMKQDIPVLKLEDSFAKALEMTIDHPF--ICAVNEDGYFE 129

Query: 386 DIYSRSDI 393
            I +R  I
Sbjct: 130 GILTRRAI 137

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} Length = 150

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 27/162 (16%), Positives = 56/162 (34%), Gaps = 32/162 (19%)

Query: 156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILR 215
            V +L+  S KV  + +   ++ A  VL + G   +P+ D    +  G++S      IL 
Sbjct: 16  FVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDP-MYKLHGLISTAM---ILD 71

Query: 216 ELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVAL 275
            +      L  E +E   +   KV ++       M        + +      DS  +   
Sbjct: 72  GI------LGLERIEFERLEEMKVEQV-------MK-------QDIPVLKLEDSFAKALE 111

Query: 276 KILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHF 317
             + +    +  ++  G          + +   ILK + +  
Sbjct: 112 MTIDHPF--ICAVNEDG------YFEGILTRRAILKLLNKKV 145

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 Length = 133

 Score = 41.4 bits (98), Expect = 8e-05
 Identities = 28/142 (19%), Positives = 52/142 (36%), Gaps = 39/142 (27%)

Query: 259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK 318
             ++       L ++A  + +  + +V ++    P G    I+   +  DI+K I +   
Sbjct: 12  TQVISVTKDAKLNDIAKVMTEKNIGSVIVVDGNKPVG----II---TERDIVKAIGKGKS 64

Query: 319 HSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAM------LRPTASLGSALALLVQADV 372
                   L+                        M      +R  + +  ALAL+ Q ++
Sbjct: 65  --------LETKAEEF------------------MTASLITIREDSPITGALALMRQFNI 98

Query: 373 SSIPIVDDNDSLLDIYSRSDIT 394
             +P+VDD  +L  I S  DIT
Sbjct: 99  RHLPVVDDKGNLKGIISIRDIT 120

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A* Length = 159

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 10/40 (25%), Positives = 21/40 (52%)

Query: 354 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDI 393
           +    S+  A+  +   DV ++ +VD +  L+ + SR D+
Sbjct: 29  IHENVSVYDAICTMFLEDVGTLFVVDRDAVLVGVLSRKDL 68

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A* Length = 159

 Score = 38.9 bits (91), Expect = 9e-04
 Identities = 24/153 (15%), Positives = 57/153 (37%), Gaps = 32/153 (20%)

Query: 262 VQAGPYDSLKEVALKILQNKVATVPIIHSTG-PAGSCQEILYLASLSDILKCICRHFKHS 320
           V      S+ +    +    V T+ ++       G    +L   S  D+L+      +  
Sbjct: 27  VVIHENVSVYDAICTMFLEDVGTLFVVDRDAVLVG----VL---SRKDLLRASIGQQE-- 77

Query: 321 SSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDD 380
                +   PV  I   T +P I         + R    +      L++  + ++P++ D
Sbjct: 78  -----LTSVPVHIIM--TRMPNI--------TVCRREDYVMDIAKHLIEKQIDALPVIKD 122

Query: 381 NDS---LLDIYSRSDIT----ALAKDKAYAQIH 406
            D    ++   +++++T    +L++++   Q H
Sbjct: 123 TDKGFEVIGRVTKTNMTKILVSLSENEILLQHH 155

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A Length = 133

 Score = 40.6 bits (96), Expect = 1e-04
 Identities = 10/45 (22%), Positives = 21/45 (46%)

Query: 349 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDI 393
                +    +L +A   + + D+ ++PI  D+D L  + +  DI
Sbjct: 16  AGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDI 60

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Length = 159

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 12/128 (9%), Positives = 38/128 (29%), Gaps = 22/128 (17%)

Query: 266 PYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLP 325
             ++L+   L + +     +P++  +        +  L   + I+  I    +     L 
Sbjct: 31  VGNNLEHALLVLTKTGYTAIPVLDPSY------RLHGLIGTNMIMNSIFGLERIEFEKLD 84

Query: 326 ILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLL 385
            +               + E        L     +     +++  +   + + +D     
Sbjct: 85  QI--------------TVEEVMLTDIPRLHINDPIMKGFGMVI--NNGFVCVENDEQVFE 128

Query: 386 DIYSRSDI 393
            I++R  +
Sbjct: 129 GIFTRRVV 136

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1 Length = 138

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 11/45 (24%), Positives = 30/45 (66%)

Query: 349 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDI 393
           +    ++P+ S+  A  L+++ DV S+ +++D+ +++  +++SDI
Sbjct: 15  KKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDI 59

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str} Length = 165

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 13/58 (22%), Positives = 28/58 (48%)

Query: 336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDI 393
           + T+V  + +  GR    + P  S+G A   L    + ++ + D +  +L I++  D+
Sbjct: 22  MATFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDL 79

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 Length = 160

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 16/40 (40%), Positives = 22/40 (55%)

Query: 354 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDI 393
           L  T +L  A  L+   D+  +PIVD N  LL I S+ D+
Sbjct: 18  LLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDL 57

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A Length = 184

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 18/150 (12%), Positives = 46/150 (30%), Gaps = 27/150 (18%)

Query: 259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTG-PAGSCQEILYLASLSDILKCICRHF 317
                     ++ +    + +N +  + +    G   G    +L   S   I+K      
Sbjct: 17  SNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVG----LL---SERSIIKRFIPRN 69

Query: 318 KHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPI 377
           K           P+  +              +P   ++    +    A L +  +    +
Sbjct: 70  KKPDE------VPIRLVM--R----------KPIPKVKSDYDVKDVAAYLSENGLERCAV 111

Query: 378 VDDNDSLLDIYSRSDIT-ALAKDKAYAQIH 406
           VDD   ++ I + +D++  L++      + 
Sbjct: 112 VDDPGRVVGIVTLTDLSRYLSRASITDILL 141

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A* Length = 122

 Score = 39.4 bits (93), Expect = 3e-04
 Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 354 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT-ALAKDKA 401
                S+  A  +L++ +++ +PIVD++  L+ I +  DI  ALA++K 
Sbjct: 14  AHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALAQNKK 62

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} Length = 138

 Score = 39.5 bits (93), Expect = 3e-04
 Identities = 9/40 (22%), Positives = 23/40 (57%)

Query: 354 LRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDI 393
            +    +  A   +++  +SS+P++DD + ++ I + +DI
Sbjct: 21  AKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDI 60

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A* Length = 245

 Score = 41.1 bits (95), Expect = 4e-04
 Identities = 37/262 (14%), Positives = 91/262 (34%), Gaps = 33/262 (12%)

Query: 154 THTVYELLPD--SGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFI 211
           +H V   + D    K+  L   +++K A++++ ++ L  +P+ D      +G+LS  +  
Sbjct: 2   SHMVKLKVEDLEMDKIAPLAPEVSLKMAWNIMRDKNLKSIPVADG-NNHLLGMLSTSNIT 60

Query: 212 LILRELGTNGSNLTEEELETHTISAWK-------------VGKLQLNLKRQMDGNGRPCP 258
               ++  +           + +                  GK+ +   +          
Sbjct: 61  ATYMDIWDSNILAKSATSLDNILDTLSAEAQNINEERKVFPGKVVVAAMQAESLKEFISE 120

Query: 259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK 318
             +  AG    ++   ++        V ++  TG     +EI+ LA  ++I      H  
Sbjct: 121 GDIAIAGDRAEIQAELIE------LKVSLLIVTGGHTPSKEIIELAKKNNITVITTPHDS 174

Query: 319 HSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIV 378
            ++S L +   PV  +                   +     +      + +   S+ P++
Sbjct: 175 FTASRLIVQSLPVDYVM-----------TKDNLVAVSTDDLVEDVKVTMSETRYSNYPVI 223

Query: 379 DDNDSLLDIYSRSDITALAKDK 400
           D+N+ ++   +R  + +  K K
Sbjct: 224 DENNKVVGSIARFHLISTHKKK 245

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A Length = 141

 Score = 39.2 bits (92), Expect = 6e-04
 Identities = 23/145 (15%), Positives = 48/145 (33%), Gaps = 41/145 (28%)

Query: 257 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTG---PAGSCQEILYLASLSDILKCI 313
             RP V      +++EVA ++ +N+V    +        P      ++   S  DIL+ +
Sbjct: 11  LKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVA----VV---SERDILRAV 63

Query: 314 CRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAM-----LRPTASLGSALALLV 368
            +           L  P   I                        +  T  +  A   + 
Sbjct: 64  AQRLD--------LDGPAMPI------------------ANSPITVLDTDPVHVAAEKMR 97

Query: 369 QADVSSIPIVDDNDSLLDIYSRSDI 393
           + ++  + +V+ N  L+ + S  D+
Sbjct: 98  RHNIRHVVVVNKNGELVGVLSIRDL 122

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	426
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	100.0
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	99.95
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	99.95
1z0n_A	96	5'-AMP-activated protein kinase, beta-1 subunit; b	99.91
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.91
2qlv_B	252	Protein SIP2, protein SPM2; heterotrimer, ATP-bind	99.89
3ddj_A	296	CBS domain-containing protein; structural genomics	99.89
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.88
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	99.88
3ddj_A	296	CBS domain-containing protein; structural genomics	99.88
3nme_A	294	Ptpkis1 protein, SEX4 glucan phosphatase; dual spe	99.86
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	99.86
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	99.85
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	99.85
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	99.81
4esy_A	170	CBS domain containing membrane protein; structural	99.75
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	99.71
4esy_A	170	CBS domain containing membrane protein; structural	99.69
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	99.69
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	99.68
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	99.68
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	99.68
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	99.67
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	99.67
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	99.67
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	99.67
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	99.67
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	99.66
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	99.66
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	99.65
1pbj_A	125	Hypothetical protein; structural genomics, domain,	99.65
3oco_A	153	Hemolysin-like protein containing CBS domains; str	99.65
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	99.65
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	99.64
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	99.64
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	99.63
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	99.63
3ocm_A	173	Putative membrane protein; structural genomics, PS	99.63
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	99.62
3ocm_A	173	Putative membrane protein; structural genomics, PS	99.62
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	99.62
1vr9_A	213	CBS domain protein/ACT domain protein; structural	99.62
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	99.62
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	99.61
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	99.61
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	99.61
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	99.61
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	99.6
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	99.6
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	99.6
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	99.6
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	99.6
4fry_A	157	Putative signal-transduction protein with CBS DOM;	99.6
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	99.59
3oco_A	153	Hemolysin-like protein containing CBS domains; str	99.59
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	99.58
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	99.58
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	99.58
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	99.58
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	99.58
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	99.58
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	99.58
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	99.58
1pvm_A	184	Conserved hypothetical protein TA0289; structural	99.58
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	99.57
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	99.56
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	99.56
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	99.56
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	99.56
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	99.55
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	99.55
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	99.55
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	99.55
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	99.54
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	99.54
1vr9_A	213	CBS domain protein/ACT domain protein; structural	99.53
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	99.53
1pbj_A	125	Hypothetical protein; structural genomics, domain,	99.53
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	99.53
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	99.52
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	99.52
4aee_A	696	Alpha amylase, catalytic region; hydrolase, hypert	99.52
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	99.51
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	99.51
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	99.51
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	99.5
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	99.5
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	99.5
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	99.5
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	99.5
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	99.49
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	99.49
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	99.48
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	99.47
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	99.47
4fry_A	157	Putative signal-transduction protein with CBS DOM;	99.47
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	99.45
2oux_A	286	Magnesium transporter; 10001B, structural genomics	99.45
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	99.44
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	99.43
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	99.41
1pvm_A	184	Conserved hypothetical protein TA0289; structural	99.41
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	99.31
2oux_A	286	Magnesium transporter; 10001B, structural genomics	99.31
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	99.28
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	99.28
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	99.26
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	99.24
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	99.23
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	99.22
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	99.22
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	99.21
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.2
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	99.18
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	99.16
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	99.14
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.13
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	99.12
4aef_A	645	Neopullulanase (alpha-amylase II); hydrolase, ther	99.11
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	99.01
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	99.0
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	98.94
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	98.92
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	98.91
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	98.9
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	98.85
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	98.78
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	98.78
3fio_A	70	A cystathionine beta-synthase domain protein fused	98.74
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	98.73
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	98.7
2z0b_A	131	GDE5, KIAA1434, putative glycerophosphodiester pho	98.5
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	98.37
3fio_A	70	A cystathionine beta-synthase domain protein fused	98.29
1ac0_A	108	Glucoamylase; hydrolase, starch binding domain; HE	98.05
3c8d_A	403	Enterochelin esterase; alpha-beta-alpha sandwich,	98.05
1m7x_A	617	1,4-alpha-glucan branching enzyme; alpha/beta barr	97.41
3aml_A	755	OS06G0726400 protein; starch-branching, transferas	97.36
3k1d_A	722	1,4-alpha-glucan-branching enzyme; mycobacterium t	97.34
2laa_A	104	Beta/alpha-amylase; SBD, CBM25, hydrolase; NMR {Pa	96.4
1qho_A	686	Alpha-amylase; glycoside hydrolase, starch degrada	96.19
3vgf_A	558	Malto-oligosyltrehalose trehalohydrolase; alpha/be	96.02
1bf2_A	750	Isoamylase; hydrolase, glycosidase, debranching en	95.97
1cyg_A	680	Cyclodextrin glucanotransferase; glycosyltransfera	95.78
2wsk_A	657	Glycogen debranching enzyme; carbohydrate metaboli	95.75
1wzl_A	585	Alpha-amylase II; pullulan, GH-13, alpha-amylase f	95.71
2vn4_A	599	Glucoamylase; hydrolase, carbohydrate binding, gly	95.69
2vr5_A	718	Glycogen operon protein GLGX; hydrolase, glycosida	95.59
3bmv_A	683	Cyclomaltodextrin glucanotransferase; glycosidase,	95.51
2bhu_A	602	Maltooligosyltrehalose trehalohydrolase; alpha-amy	95.48
1d3c_A	686	Cyclodextrin glycosyltransferase; alpha-amylase, p	95.33
1vem_A	516	Beta-amylase; beta-alpha-barrels, optimum PH, hydr	95.15
1j0h_A	588	Neopullulanase; beta-alpha-barrels, hydrolase; 1.9	95.14
2e8y_A	718	AMYX protein, pullulanase; multiple domain, beta-a	94.5
2fhf_A	1083	Pullulanase; multiple domain, beta-alpha-barrel, a	93.83
3faw_A	877	Reticulocyte binding protein; TIM barrel, beta bar	93.03
2ya0_A	714	Putative alkaline amylopullulanase; hydrolase, gly	92.75
1gcy_A	527	Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-b	92.61
4aio_A	884	Limit dextrinase; hydrolase, pullulanase, glycosid	92.35
1ea9_C	583	Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A	92.14
2wan_A	921	Pullulanase; hydrolase, glycoside hydrolase, polys	92.05
3m07_A	618	Putative alpha amylase; IDP00968, csgid, structura	91.67
2wan_A	921	Pullulanase; hydrolase, glycoside hydrolase, polys	91.1
2ya1_A	1014	Putative alkaline amylopullulanase; hydrolase, gly	88.95
4fch_A	221	Outer membrane protein SUSE; starch binding, extra	88.8
1ji1_A	637	Alpha-amylase I; beta/alpha barrel, hydrolase; 1.6	88.16
2c3v_A	102	Alpha-amylase G-6; carbohydrate-binding module, st	86.95

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=100.00  E-value=6.9e-32  Score=263.69  Aligned_cols=246  Identities=25%  Similarity=0.434  Sum_probs=190.9

Q ss_pred             HHHHHHHHHhccccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCC
Q 014342          143 LSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGS  222 (426)
Q Consensus       143 ~~~~~~~~~l~~~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~  222 (426)
                      ...+++.+||++++|+|+||.+.++++++.+.|+.+|+++|.+++++++||||++.++++|++|..|++.++.+++....
T Consensus        18 ~~~~~i~~~l~~~~~~d~m~~~~~~v~v~~~~sv~~a~~~m~~~~~~~~pV~d~~~~~lvGilt~~Dl~~~l~~~~~~~~   97 (323)
T 3t4n_C           18 LAVESIRKFLNSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKTSRFAGLLTTTDFINVIQYYFSNPD   97 (323)
T ss_dssp             HHHHHHHHHHHHSBHHHHSCSEEEEEEEETTSBHHHHHHHHHHTTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHHCGG
T ss_pred             HHHHHHHHHHHhCchHhhCCCCCcEEEEcCCCcHHHHHHHHHHcCCceEEEEeCCCCeEEEEEEHHHHHHHHHHHHcCcc
Confidence            36789999999999999999999999999999999999999999999999999876799999999999998776554321


Q ss_pred             CCChhhhcccchhhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEE
Q 014342          223 NLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILY  302 (426)
Q Consensus       223 ~~~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvG  302 (426)
                      ..  +.+.......+.+......          .|+++++++.+++++.+|++.|.+++++++||++++...+ ..+++|
T Consensus        98 ~~--~~l~~~~~~~v~~i~~~~~----------~~~~~~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~-~~~l~G  164 (323)
T 3t4n_C           98 KF--ELVDKLQLDGLKDIERALG----------VDQLDTASIHPSRPLFEACLKMLESRSGRIPLIDQDEETH-REIVVS  164 (323)
T ss_dssp             GG--GGGGGCBHHHHHHHHHHTT----------C----CCCBCTTSBHHHHHHHHHHHTCSEEEEEEECTTTC-CEEEEE
T ss_pred             hh--HHHHHHHHHHHHHHHHHhC----------CCCCCceEeCCCCcHHHHHHHHHhCCeeEEEEEecCCCCC-ccceEE
Confidence            11  2333333334444332221          3577889999999999999999999999999997532222 113999


Q ss_pred             EecHHhHHHHHHhhccccCCCccccccccccccccccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCC
Q 014342          303 LASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDND  382 (426)
Q Consensus       303 iit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g  382 (426)
                      ++|++|+++++..+...    ......++.+++++.         .++++++.+++++.+|+++|.+++++++||+|++|
T Consensus       165 ivt~~di~~~l~~~~~~----~~~~~~~v~~~~~~m---------~~~~~~v~~~~~~~~~~~~m~~~~~~~~pVvd~~~  231 (323)
T 3t4n_C          165 VLTQYRILKFVALNCRE----THFLKIPIGDLNIIT---------QDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENG  231 (323)
T ss_dssp             EEEHHHHHHHHHHHCGG----GGGCCSBGGGTTCSB---------CTTCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTC
T ss_pred             EecHHHHHHHHHhcCCc----hhhhhCcHHHcCCCC---------CCCcEEECCCCcHHHHHHHHHHcCCCEEEEECCCC
Confidence            99999999998866543    234456777774432         25788999999999999999999999999999999


Q ss_pred             cEEEEEeHHHHHHHHhccccccCCCCCccHHHHHH
Q 014342          383 SLLDIYSRSDITALAKDKAYAQIHLDEMNIHQVIA  417 (426)
Q Consensus       383 ~lvGiis~~DI~~~~~~~~~~~l~~~~~~v~~~l~  417 (426)
                      +++|+||++||++.+..+.+..+.   .+|++++.
T Consensus       232 ~~~Giit~~dl~~~~~~~~~~~~~---~~v~~~m~  263 (323)
T 3t4n_C          232 YLINVYEAYDVLGLIKGGIYNDLS---LSVGEALM  263 (323)
T ss_dssp             BEEEEEETTHHHHHHHTTHHHHTT---SBHHHHGG
T ss_pred             eEEEEEeHHHHHHHHhhchhhhcc---CCHHHHHh
Confidence            999999999999988776554442   45555543

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=99.95  E-value=1.4e-26  Score=227.08  Aligned_cols=234  Identities=22%  Similarity=0.419  Sum_probs=180.0

Q ss_pred             HHHHHHHHHHhccccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCC
Q 014342          142 QLSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNG  221 (426)
Q Consensus       142 ~~~~~~~~~~l~~~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~  221 (426)
                      ....+.+.+||...+|+|+|+...++++++.+.|+.+|+++|.+++++++||+|++.++++|+||.+|++..+...+...
T Consensus         9 ~~~~~~~~~~l~~~~v~dim~~~~~vv~v~~~~tv~~a~~~~~~~~~~~~pV~d~~~~~~vGiv~~~Dl~~~~~~~~~~~   88 (334)
T 2qrd_G            9 KGALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQSS   88 (334)
T ss_dssp             HHHHHHHHHHHHHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhcCchhhhCCCCCCEEEEcCCCCHHHHHHHHHHcCCeEEEEEeCCCCeEEEEEEHHHHHHHHHHHhhcc
Confidence            34677889999999999999999999999999999999999999999999999976679999999999998765433210


Q ss_pred             CCC-ChhhhcccchhhhHHHHHhhccccccCCCCCCCCCCc--eEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCC-Cc
Q 014342          222 SNL-TEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPL--VQAGPYDSLKEVALKILQNKVATVPIIHSTGPAG-SC  297 (426)
Q Consensus       222 ~~~-~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~--v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g-~~  297 (426)
                      ... ..+.+....+..+.+....++            .+++  +++.+++++.+|++.|.+++++++||++++  .+ ..
T Consensus        89 ~~~~~~~~~~~~~~~~i~~~l~~im------------~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~--~~~~~  154 (334)
T 2qrd_G           89 SFPEAIAEIDKFRLLGLREVERKIG------------AIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVD--GETGS  154 (334)
T ss_dssp             SCGGGGGGGGSCBHHHHHHHHHHHT------------CSCSSCCCBCTTSBHHHHHHHHHHSCCSEEEEEEEE--TTTTE
T ss_pred             CCccHHHHHhhhchhhHHHHHHhhc------------cCCCceeeeCCCCcHHHHHHHHHHCCceEEEEEeCC--CCcCc
Confidence            000 011233444555555444433            3445  889999999999999999999999999742  12 00


Q ss_pred             ceEEEEecHHhHHHHHHhhccccCCCccccccccccccccccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeE
Q 014342          298 QEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPI  377 (426)
Q Consensus       298 ~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPV  377 (426)
                      ..++|++|..||++++......    ......++.+++.  .       |.++++++.+++++.+|+++|.+++++++||
T Consensus       155 ~~~~Givt~~dl~~~~~~~~~~----~~~~~~~v~~l~~--~-------m~~~~~~v~~~~~~~~~~~~m~~~~~~~~~V  221 (334)
T 2qrd_G          155 EMIVSVLTQYRILKFISMNCKE----TAMLRVPLNQMTI--G-------TWSNLATASMETKVYDVIKMLAEKNISAVPI  221 (334)
T ss_dssp             EEEEEEEEHHHHHHHHHHHCGG----GGGCCCBGGGSSC--S-------BCSSCCCBCTTSBHHHHHHHHHHHTCSEEEE
T ss_pred             cceEEEeeHHHHHHHHHhhccc----hhhhhCcHHHhCC--c-------ccCCceEECCCCcHHHHHHHHHHcCCcEEEE
Confidence            1299999999999988754322    1223455555421  1       1257788999999999999999999999999


Q ss_pred             EcCCCcEEEEEeHHHHHHHHhcccc
Q 014342          378 VDDNDSLLDIYSRSDITALAKDKAY  402 (426)
Q Consensus       378 Vd~~g~lvGiis~~DI~~~~~~~~~  402 (426)
                      +|++|+++|+||.+||++.+..+.+
T Consensus       222 vd~~~~~~Giit~~dl~~~~~~~~~  246 (334)
T 2qrd_G          222 VNSEGTLLNVYESVDVMHLIQDGDY  246 (334)
T ss_dssp             ECTTCBEEEEEETHHHHHHHTTSCG
T ss_pred             EcCCCcEEEEEEHHHHHHHhhcccc
Confidence            9998999999999999998765543

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=99.95  E-value=7.2e-27  Score=228.88  Aligned_cols=231  Identities=34%  Similarity=0.594  Sum_probs=181.4

Q ss_pred             HHHHHHHHhccccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCC
Q 014342          144 SRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSN  223 (426)
Q Consensus       144 ~~~~~~~~l~~~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~  223 (426)
                      +.+.+..||...+++|+|+.+.++++++.+.|+.+|+++|.+++++++||+|++.++++|++|.+|++..+........ 
T Consensus        24 ~~~~~~~~l~~~~v~dim~p~~~v~~v~~~~~v~~a~~~~~~~~~~~~pV~d~~~~~~vGivt~~Dll~~l~~~~~~~~-  102 (330)
T 2v8q_E           24 NSSVYTTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSAL-  102 (330)
T ss_dssp             CSCHHHHHHHHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHHHT-
T ss_pred             hhHHHHHHHHcCcHhhhccCCCcEEEEeCCCcHHHHHHHHHHcCCcEEEEEeCCCCeEEEEEEHHHHHHHHHHHHhccc-
Confidence            5678999999999999999888999999999999999999999999999999765799999999999987654321100 


Q ss_pred             CChhhhcccchhhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEE
Q 014342          224 LTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYL  303 (426)
Q Consensus       224 ~~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGi  303 (426)
                      .....+....+..+......            .|.++++++.+++++.+|++.|.+++++++||+|  ++.|   +++|+
T Consensus       103 ~~~~~l~~~~~~~~~~~~~~------------im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd--~~~~---~~~Gi  165 (330)
T 2v8q_E          103 VQIYELEEHKIETWREVYLQ------------DSFKPLVCISPNASLFDAVSSLIRNKIHRLPVID--PESG---NTLYI  165 (330)
T ss_dssp             TTCCCGGGCBHHHHHHHHSS------------SSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEEC--TTTC---CEEEE
T ss_pred             cchhHHhhccHHHHHHHHhh------------cccCCceEeCCCCCHHHHHHHHHHCCCCeEEEEe--CCCC---cEEEE
Confidence            00122333444555443332            3578889999999999999999999999999995  2145   69999


Q ss_pred             ecHHhHHHHHHhhccccCCCccccccccccccccccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCc
Q 014342          304 ASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDS  383 (426)
Q Consensus       304 it~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~  383 (426)
                      +|..|+++++..+....+. ..++..++.++.+++.         ++++++.+++++.+|+++|.+++++++||+|++|+
T Consensus       166 vt~~dl~~~~~~~~~~~~~-~~~~~~~v~~~~v~~~---------~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~  235 (330)
T 2v8q_E          166 LTHKRILKFLKLFITEFPK-PEFMSKSLEELQIGTY---------ANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGR  235 (330)
T ss_dssp             ECHHHHHHHHHHHSCSSSC-CGGGGSBHHHHTCSBC---------SSCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSB
T ss_pred             EcHHHHHHHHHHHhhccCc-hhhhcCCHHHhcccCc---------CCceEECCCCCHHHHHHHHHHcCCCeEEEECCCCc
Confidence            9999999998765432211 1234455555543331         37788999999999999999999999999998899


Q ss_pred             EEEEEeHHHHHHHHhcccc
Q 014342          384 LLDIYSRSDITALAKDKAY  402 (426)
Q Consensus       384 lvGiis~~DI~~~~~~~~~  402 (426)
                      ++|+||.+||++.+..+.+
T Consensus       236 l~Giit~~dl~~~~~~~~~  254 (330)
T 2v8q_E          236 VVDIYSKFDVINLAAEKTY  254 (330)
T ss_dssp             EEEEEEGGGTGGGGGSSCC
T ss_pred             EEEEEEHHHHHHHHhcccc
Confidence            9999999999987765433

>1z0n_A 5'-AMP-activated protein kinase, beta-1 subunit; beta sandwich, sugar binding protein; HET: BCD; 1.49A {Rattus norvegicus} SCOP: b.1.18.21 PDB: 1z0m_A* 2f15_A

Probab=99.91  E-value=4.4e-24  Score=170.94  Aligned_cols=86  Identities=43%  Similarity=0.835  Sum_probs=77.1

Q ss_pred             CCCcceEEEEEecCCCceEEEEeccCCCCCCCCCCCCCCCCCeEEEEEecCCceEEEEEEEcCeeecCCCCCeeeCCCCC
Q 014342           16 VGSILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGV   95 (426)
Q Consensus        16 ~~~~~~~v~f~~~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~L~~g~y~ykFiVDg~w~~d~~~p~~~d~~G~   95 (426)
                      ..+.+++++|+|.++|++|+|+|+||+|+ ..+|.+.   .|.|+++++|++|.|+|||+|||.|++||.+|++.|+.|+
T Consensus         6 ~~~~~~~v~F~wap~a~~V~v~GdFn~W~-~~~m~~~---~g~w~~~v~l~~G~~~YKf~VdG~~~~DP~~~~~~d~~G~   81 (96)
T 1z0n_A            6 APAQARPTVFRWTGGGKEVYLSGSFNNWS-KLPMTRS---QNNFVAILDLPEGEHQYKFFVDGQWTHDPSEPIVTSQLGT   81 (96)
T ss_dssp             ----CEEEEEEECSCCSCEEEEEGGGTTC-CEECEEE---TTEEEEEEEECSEEEEEEEEETTEEECCTTSCEEECTTSC
T ss_pred             CCCCceEEEEEECCCCcEEEEEEEeCCCc-cccCEEC---CCEEEEEEEccCCCEEEEEEECCeEEcCCCCCeEECCCCC
Confidence            45678999999999999999999999999 6899984   4899999999999999999999999999999999999999


Q ss_pred             eeeEEEeccCC
Q 014342           96 VNCVYIAVPQP  106 (426)
Q Consensus        96 ~nn~~~v~~~~  106 (426)
                      .||+|.| ..+
T Consensus        82 ~Nnvi~V-~~~   91 (96)
T 1z0n_A           82 VNNIIQV-KKT   91 (96)
T ss_dssp             EEEEEEE-CSC
T ss_pred             EeEEEEE-cCC
Confidence            9999999 543

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=99.91  E-value=9.7e-23  Score=194.02  Aligned_cols=201  Identities=14%  Similarity=0.283  Sum_probs=149.8

Q ss_pred             cccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchh
Q 014342          156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTIS  235 (426)
Q Consensus       156 ~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~  235 (426)
                      ++.+++... ++++++++.|+.+|+++|.+++++++||+|+++++++|++|..|++..+.......  +.........+.
T Consensus         4 ~v~~~i~~~-~~~~v~~~~sl~~a~~~m~~~~~~~lpV~d~~~~~~~Givt~~di~~~~~~~~~~~--~~~~~~~~~~~~   80 (280)
T 3kh5_A            4 RVMKIAQNK-KIVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDFMGGGSKYN--LIREKHERNFLA   80 (280)
T ss_dssp             BGGGTSCCS-CCCCBCTTSBHHHHHHHHHHHCCCEEEEECTTTCBEEEEEEHHHHHHHTTTSGGGH--HHHTTSTTCHHH
T ss_pred             hHHHHhcCC-CcEEECCCCcHHHHHHHHHhCCCcEeeEEECCCCeEEEEEEHHHHHHHhcccchhh--hhhhccccchhH
Confidence            344544433 79999999999999999999999999999975689999999999987653211000  000000000000


Q ss_pred             hhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHh
Q 014342          236 AWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICR  315 (426)
Q Consensus       236 ~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~  315 (426)
                      .......            ..|.++++++.+++++.+|++.|.+++++++||+|+   +|   +++|++|..|+++++..
T Consensus        81 ~~~~~v~------------~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~---~~---~~~Givt~~dl~~~~~~  142 (280)
T 3kh5_A           81 AINEPVR------------EIMEENVITLKENADIDEAIETFLTKNVGGAPIVND---EN---QLISLITERDVIRALLD  142 (280)
T ss_dssp             HTTSBGG------------GTSBCSCCCEETTCBHHHHHHHHHHTTCSEEEEECT---TC---BEEEEEEHHHHHHHHGG
T ss_pred             HhhhhHH------------HhcCCCCEEECCCCCHHHHHHHHHhCCCCEEEEEcC---CC---EEEEEEEHHHHHHHHhh
Confidence            0100111            135678899999999999999999999999999952   35   79999999999998765


Q ss_pred             hccccCCCccccccccccccccccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342          316 HFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (426)
Q Consensus       316 ~~~~~~~~~~~~~~~v~~l~i~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~  395 (426)
                      ....        ..++.++|            .++++++.+++++.+|++.|.+++++++||+ ++|+++|+||.+||++
T Consensus       143 ~~~~--------~~~v~~~m------------~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv-~~~~~~Givt~~dl~~  201 (280)
T 3kh5_A          143 KIDE--------NEVIDDYI------------TRDVIVATPGERLKDVARTMVRNGFRRLPVV-SEGRLVGIITSTDFIK  201 (280)
T ss_dssp             GSCT--------TCBSGGGC------------BCSCCCBCTTCBHHHHHHHHHHHTCSEEEEE-ETTEEEEEEEHHHHHH
T ss_pred             cCCC--------CCCHHHHh------------CCCCeEECCCCcHHHHHHHHHHcCCCEEEEE-ECCEEEEEEEHHHHHH
Confidence            4221        22444444            2477889999999999999999999999999 5799999999999998


Q ss_pred             HHh
Q 014342          396 LAK  398 (426)
Q Consensus       396 ~~~  398 (426)
                      .+.
T Consensus       202 ~~~  204 (280)
T 3kh5_A          202 LLG  204 (280)
T ss_dssp             HHT
T ss_pred             HHh
Confidence            764

>2qlv_B Protein SIP2, protein SPM2; heterotrimer, ATP-binding, carbohydrate metabolism, kinase, membrane, nucleotide-binding, nucleus; 2.60A {Saccharomyces cerevisiae} SCOP: b.1.18.21 d.353.1.1

Probab=99.89  E-value=1.3e-23  Score=196.44  Aligned_cols=88  Identities=32%  Similarity=0.663  Sum_probs=80.7

Q ss_pred             cceEEEEEecCCCceEEEEeccCCCCCCCCCCCCCCCCCeEEEEEecCCceEEEEEEEcCeeecCCCCCeeeCCCCCeee
Q 014342           19 ILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNC   98 (426)
Q Consensus        19 ~~~~v~f~~~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~L~~g~y~ykFiVDg~w~~d~~~p~~~d~~G~~nn   98 (426)
                      ..+|++|+|+++|++|+|+|+|++|++.++|.+.++.+|.|++++.||||.|+|||+|||+|++||++|++.|+.|+.||
T Consensus         2 ~~vpv~f~W~~~a~~V~V~GsF~~W~~~~~m~k~~~~~G~f~~tv~LppG~y~YKFiVDG~w~~Dp~~p~~~d~~G~~nN   81 (252)
T 2qlv_B            2 LMVPVEIRWQQGGSKVYVTGSFTKWRKMIGLIPDSDNNGSFHVKLRLLPGTHRFRFIVDNELRVSDFLPTATDQMGNFVN   81 (252)
T ss_dssp             CCEEEEEEECSCCSCEEEEEGGGTTSSCEECEECSSSTTCEEEEEEECSEEEEEEEEETTEEECCTTSCEEBCSSCCCEE
T ss_pred             CcEEEEEEEeCCCcEEEEEEEeCCCcCcccceeccCCCCcEEEEEECCCCEEEEEEEECCEEEeCCCCCEEecCCCcCcc
Confidence            47899999999999999999999999888999854457999999999999999999999999999999999999999999


Q ss_pred             EEEeccCCC
Q 014342           99 VYIAVPQPD  107 (426)
Q Consensus        99 ~~~v~~~~~  107 (426)
                      +|+| .+++
T Consensus        82 vi~V-~~~~   89 (252)
T 2qlv_B           82 YIEV-RQPE   89 (252)
T ss_dssp             EEEE-CC--
T ss_pred             eeec-cCcc
Confidence            9999 6543

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=99.89  E-value=6.7e-23  Score=197.42  Aligned_cols=195  Identities=12%  Similarity=0.237  Sum_probs=155.0

Q ss_pred             cccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccc
Q 014342          154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHT  233 (426)
Q Consensus       154 ~~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~  233 (426)
                      ..++.++|..  .++++.++.++.+|+++|.+++++++||+|+ +++++|++|..|++..+....           ...+
T Consensus        92 ~~~v~~im~~--~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~-~~~lvGivt~~dl~~~~~~~~-----------~~~~  157 (296)
T 3ddj_A           92 TTPIIDYMTP--NPVTVYNTSDEFTAINIMVTRNFGSLPVVDI-NDKPVGIVTEREFLLLYKDLD-----------EIFP  157 (296)
T ss_dssp             TSBGGGTSEE--SCCCEETTSCHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHGGGGGGSC-----------CCCB
T ss_pred             cccHHHhccC--CCEEEcCCCCHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEeHHHHHHhhhccc-----------cccc
Confidence            5789999976  6778999999999999999999999999985 479999999999875442111           0111


Q ss_pred             hhhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHH
Q 014342          234 ISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCI  313 (426)
Q Consensus       234 i~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l  313 (426)
                      +..+                   |.++++++.+++++.+|++.|.+++++++||+|   ++|   +++|++|..|+++.+
T Consensus       158 v~~~-------------------m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd---~~~---~~~Givt~~dl~~~~  212 (296)
T 3ddj_A          158 VKVF-------------------MSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVID---DDN---KVVGIVTVVNAIKQL  212 (296)
T ss_dssp             HHHH-------------------SBCSCCCEETTSBHHHHHHHHHHHTCSEEEEEC---TTS---CEEEEEEHHHHHHHH
T ss_pred             HHHh-------------------hcCCCeEECCCCCHHHHHHHHHHcCCCEEEEEc---CCC---EEEEEEEHHHHHHHH
Confidence            2221                   356788899999999999999999999999995   235   699999999999988


Q ss_pred             HhhccccCCCccccccccccccccccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHH
Q 014342          314 CRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDI  393 (426)
Q Consensus       314 ~~~~~~~~~~~~~~~~~v~~l~i~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI  393 (426)
                      ...+..... ......++.++|            .++++++.+++++.+|+++|.+++++++||+|++|+++|+||++||
T Consensus       213 ~~~~~~~~~-~~~~~~~v~~~m------------~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~~~Giit~~Di  279 (296)
T 3ddj_A          213 AKAVDKLDP-DYFYGKVVKDVM------------VTNLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDL  279 (296)
T ss_dssp             HHHHHHTCT-HHHHTCBHHHHS------------BCCCCBCCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHH
T ss_pred             HHHHhhcCh-hhhcCcCHHHHh------------CCCCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEcHHHH
Confidence            754432110 011233444443            2578899999999999999999999999999999999999999999


Q ss_pred             HHHHhcc
Q 014342          394 TALAKDK  400 (426)
Q Consensus       394 ~~~~~~~  400 (426)
                      ++.+...
T Consensus       280 l~~l~~~  286 (296)
T 3ddj_A          280 LIALHHI  286 (296)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9987654

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=99.88  E-value=3.3e-22  Score=190.27  Aligned_cols=193  Identities=19%  Similarity=0.344  Sum_probs=151.2

Q ss_pred             cccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccc
Q 014342          154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHT  233 (426)
Q Consensus       154 ~~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~  233 (426)
                      ..++.++|.+  ++++++.+.++.+|+++|.+++++++||+|+ .++++|++|..|++..+......          ..+
T Consensus        83 ~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~~Givt~~dl~~~~~~~~~~----------~~~  149 (280)
T 3kh5_A           83 NEPVREIMEE--NVITLKENADIDEAIETFLTKNVGGAPIVND-ENQLISLITERDVIRALLDKIDE----------NEV  149 (280)
T ss_dssp             TSBGGGTSBC--SCCCEETTCBHHHHHHHHHHTTCSEEEEECT-TCBEEEEEEHHHHHHHHGGGSCT----------TCB
T ss_pred             hhhHHHhcCC--CCEEECCCCCHHHHHHHHHhCCCCEEEEEcC-CCEEEEEEEHHHHHHHHhhcCCC----------CCC
Confidence            4688999986  6788999999999999999999999999986 47999999999988765422110          001


Q ss_pred             hhhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHH
Q 014342          234 ISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCI  313 (426)
Q Consensus       234 i~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l  313 (426)
                      +..                   .|.++++++.+++++.+|++.|.+++++++||++    +|   +++|++|.+|+++.+
T Consensus       150 v~~-------------------~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~----~~---~~~Givt~~dl~~~~  203 (280)
T 3kh5_A          150 IDD-------------------YITRDVIVATPGERLKDVARTMVRNGFRRLPVVS----EG---RLVGIITSTDFIKLL  203 (280)
T ss_dssp             SGG-------------------GCBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE----TT---EEEEEEEHHHHHHHH
T ss_pred             HHH-------------------HhCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEE----CC---EEEEEEEHHHHHHHH
Confidence            111                   2456788999999999999999999999999993    35   799999999999987


Q ss_pred             Hhhccc--c--CCCccccccccccccccccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEe
Q 014342          314 CRHFKH--S--SSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYS  389 (426)
Q Consensus       314 ~~~~~~--~--~~~~~~~~~~v~~l~i~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis  389 (426)
                      ......  .  .........++.++|            .++++++++++++.+|+++|.+++++++||+|++|+++|+||
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~v~~~m------------~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~~~Givt  271 (280)
T 3kh5_A          204 GSDWAFNHMQTGNVREITNVRMEEIM------------KRDVITAKEGDKLKKIAEIMVTNDIGALPVVDENLRIKGIIT  271 (280)
T ss_dssp             TSHHHHHHHHSCCTHHHHHCBHHHHS------------BSSCCCBCTTCBHHHHHHHHHHHTCCEEEEECTTCBEEEEEE
T ss_pred             hhhhhhhhhcccchhhhhCCcHHHHh------------cCCCEEECCCCCHHHHHHHHHHCCCCEEEEECCCCeEEEEEe
Confidence            543210  0  000011233444443            257889999999999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 014342          390 RSDITALA  397 (426)
Q Consensus       390 ~~DI~~~~  397 (426)
                      ++||++.+
T Consensus       272 ~~dil~~l  279 (280)
T 3kh5_A          272 EKDVLKYF  279 (280)
T ss_dssp             HHHHGGGG
T ss_pred             HHHHHHhh
Confidence            99998753

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=99.88  E-value=6.9e-22  Score=192.70  Aligned_cols=201  Identities=16%  Similarity=0.131  Sum_probs=150.7

Q ss_pred             ccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCC----cEEEEeehHHHHHHHHHhccCCCCCChhhhccc
Q 014342          157 VYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKG----RFVGVLSALDFILILRELGTNGSNLTEEELETH  232 (426)
Q Consensus       157 ~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~----~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~  232 (426)
                      +.++|+.  .+++++++.++.+|++.|.+++++.+||+|++.+    +++|++|..|++..+......      ......
T Consensus       116 ~~~~~~~--~~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~~~l~Givt~~di~~~l~~~~~~------~~~~~~  187 (323)
T 3t4n_C          116 ALGVDQL--DTASIHPSRPLFEACLKMLESRSGRIPLIDQDEETHREIVVSVLTQYRILKFVALNCRE------THFLKI  187 (323)
T ss_dssp             HTTC------CCCBCTTSBHHHHHHHHHHHTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHHHHHCGG------GGGCCS
T ss_pred             HhCCCCC--CceEeCCCCcHHHHHHHHHhCCeeEEEEEecCCCCCccceEEEecHHHHHHHHHhcCCc------hhhhhC
Confidence            3445544  6788899999999999999999999999996422    399999999999877543211      111111


Q ss_pred             chhhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHH
Q 014342          233 TISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (426)
Q Consensus       233 ~i~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~  312 (426)
                      ++..+       +         ..|.++++++.+++++.+|++.|.+++++++||+|   ++|   +++|++|.+|++++
T Consensus       188 ~v~~~-------~---------~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~pVvd---~~~---~~~Giit~~dl~~~  245 (323)
T 3t4n_C          188 PIGDL-------N---------IITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIID---ENG---YLINVYEAYDVLGL  245 (323)
T ss_dssp             BGGGT-------T---------CSBCTTCCCBCTTSBHHHHHHHHHHHTCSEEEEEC---TTC---BEEEEEETTHHHHH
T ss_pred             cHHHc-------C---------CCCCCCcEEECCCCcHHHHHHHHHHcCCCEEEEEC---CCC---eEEEEEeHHHHHHH
Confidence            22211       0         12567889999999999999999999999999995   245   79999999999998


Q ss_pred             HHhhccccCCCccccccccccccccccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHH
Q 014342          313 ICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSD  392 (426)
Q Consensus       313 l~~~~~~~~~~~~~~~~~v~~l~i~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~D  392 (426)
                      +.....      ..+..++.+++....      ...++++++.+++++.+|+++|.+++++++||||++|+++|+||.+|
T Consensus       246 ~~~~~~------~~~~~~v~~~m~~~~------~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~l~Giit~~D  313 (323)
T 3t4n_C          246 IKGGIY------NDLSLSVGEALMRRS------DDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSD  313 (323)
T ss_dssp             HHTTHH------HHTTSBHHHHGGGSC------TTCCCCEEECTTCBHHHHHHHHHHSCCCEEEEECTTSBEEEEEEHHH
T ss_pred             Hhhchh------hhccCCHHHHHhhcc------ccCCCCEEECCCCCHHHHHHHHHHhCCCEEEEECCCCcEEEEEEHHH
Confidence            765321      112445555542110      00126889999999999999999999999999999999999999999


Q ss_pred             HHHHHhc
Q 014342          393 ITALAKD  399 (426)
Q Consensus       393 I~~~~~~  399 (426)
                      |++.+..
T Consensus       314 il~~l~~  320 (323)
T 3t4n_C          314 ILKYILL  320 (323)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9997754

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=99.88  E-value=1.2e-22  Score=195.73  Aligned_cols=195  Identities=12%  Similarity=0.142  Sum_probs=151.2

Q ss_pred             cccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccc
Q 014342          154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHT  233 (426)
Q Consensus       154 ~~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~  233 (426)
                      ..++.|+|..  ++++++++.|+.+|+++|.+++++++||+|   ++++|++|..|++..+...... ... ...+.   
T Consensus        19 ~~~V~dim~~--~~~~v~~~~~v~~a~~~m~~~~~~~~~V~d---~~l~GivT~~Di~~~~~~~~~~-~~~-~~~~~---   88 (296)
T 3ddj_A           19 GMNIETLMIK--NPPILSKEDRLGSAFKKINEGGIGRIIVAN---EKIEGLLTTRDLLSTVESYCKD-SCS-QGDLY---   88 (296)
T ss_dssp             CSSGGGTCEE--SCCEECTTSBHHHHHHHTTGGGCCEEEEES---SSEEEEEEHHHHHGGGTTCC----CC-HHHHH---
T ss_pred             ccCHHHhccC--CCcEECCCccHHHHHHHHHHCCCceEEEEC---CeEEEEEeHHHHHHHhcccccc-ccc-chhhH---
Confidence            5678999976  788999999999999999999999999998   6899999999988755321100 000 00000   


Q ss_pred             hhhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHH
Q 014342          234 ISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCI  313 (426)
Q Consensus       234 i~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l  313 (426)
                       ........            ..|.++++++.+++++.+|++.|.+++++++||+|+   ++   +++|++|..|+++++
T Consensus        89 -~~~~~~v~------------~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~---~~---~lvGivt~~dl~~~~  149 (296)
T 3ddj_A           89 -HISTTPII------------DYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDI---ND---KPVGIVTEREFLLLY  149 (296)
T ss_dssp             -HHHTSBGG------------GTSEESCCCEETTSCHHHHHHHHHHHTCSEEEEECT---TS---CEEEEEEHHHHGGGG
T ss_pred             -HHhcccHH------------HhccCCCEEEcCCCCHHHHHHHHHHcCCCEEEEEcC---CC---cEEEEEeHHHHHHhh
Confidence             00000011            135678889999999999999999999999999952   35   699999999998865


Q ss_pred             HhhccccCCCccccccccccccccccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHH
Q 014342          314 CRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDI  393 (426)
Q Consensus       314 ~~~~~~~~~~~~~~~~~v~~l~i~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI  393 (426)
                      ....         ...++.++|.            ++++++.+++++.+|+++|.+++++++||+|++|+++|+||.+||
T Consensus       150 ~~~~---------~~~~v~~~m~------------~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl  208 (296)
T 3ddj_A          150 KDLD---------EIFPVKVFMS------------TKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNA  208 (296)
T ss_dssp             GGSC---------CCCBHHHHSB------------CSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHH
T ss_pred             hccc---------ccccHHHhhc------------CCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHH
Confidence            4321         1234555442            477889999999999999999999999999999999999999999


Q ss_pred             HHHHh
Q 014342          394 TALAK  398 (426)
Q Consensus       394 ~~~~~  398 (426)
                      ++.+.
T Consensus       209 ~~~~~  213 (296)
T 3ddj_A          209 IKQLA  213 (296)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98765

>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity phosphatase, carbohydrate BIND hydrolase; 2.40A {Arabidopsis thaliana}

Probab=99.86  E-value=6e-22  Score=190.89  Aligned_cols=87  Identities=26%  Similarity=0.523  Sum_probs=79.7

Q ss_pred             CCcceEEEEEecC-CCceEEEEeccCCCCCCCCCCCCCCCCCeEEEEEecCCceEEEEEEEcCeeecCCCCCee-eCCCC
Q 014342           17 GSILVPVRFIWPN-GGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHV-SGNYG   94 (426)
Q Consensus        17 ~~~~~~v~f~~~~-~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~L~~g~y~ykFiVDg~w~~d~~~p~~-~d~~G   94 (426)
                      +..+++++|+|++ +|++|+|+||||||+..++|.+.+ ++|.|++++.||||.|+|||+|||+|++||++|.. .|++|
T Consensus       166 ~~~k~~v~f~~~~~~~~~V~v~GsF~~W~~~~~l~k~~-~~g~~~~~~~L~~G~y~YkFiVDG~w~~d~~~~~~~~d~~G  244 (294)
T 3nme_A          166 GLKRKTVTLTLKDKGFSRVEISGLDIGWGQRIPLTLGK-GTGFWILKRELPEGQFEYKYIIDGEWTHNEAEPFIGPNKDG  244 (294)
T ss_dssp             CCCCEEEEEEEECSSCSCEEEEETTTEEEEEEECEECT-TTCEEEEEEEECSEEEEEEEEETTEEECCTTSCEECSCTTS
T ss_pred             ccccccceeeeccCCCCEEEEEEeccCCCCcccceEcC-CCCEEEEEEECCCceEEEEEEECCEEeeCCCCCeeeECCCC
Confidence            4567999999999 689999999999999778999865 37999999999999999999999999999999976 79999


Q ss_pred             CeeeEEEeccC
Q 014342           95 VVNCVYIAVPQ  105 (426)
Q Consensus        95 ~~nn~~~v~~~  105 (426)
                      +.||+|.| ++
T Consensus       245 ~~nn~~~v-~~  254 (294)
T 3nme_A          245 HTNNYAKV-VD  254 (294)
T ss_dssp             CCEEEEEE-CC
T ss_pred             CEeEEEEE-CC
Confidence            99999999 53

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=99.86  E-value=2.1e-21  Score=185.21  Aligned_cols=195  Identities=17%  Similarity=0.253  Sum_probs=141.6

Q ss_pred             ccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHH-HHHHhccCCCCCChhhhcccc
Q 014342          155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL-ILRELGTNGSNLTEEELETHT  233 (426)
Q Consensus       155 ~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~-~l~~~~~~~~~~~~~~l~~~~  233 (426)
                      .++.++|..  .+++++++.++.+|++.|.++++..+||+|++ ++++|++|..|++. .+...         ......+
T Consensus        60 ~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~-~~~~Giit~~di~~~~~~~~---------~~~~~~~  127 (282)
T 2yzq_A           60 EQLAMLVKR--DVPVVKENDTLKKAAKLMLEYDYRRVVVVDSK-GKPVGILTVGDIIRRYFAKS---------EKYKGVE  127 (282)
T ss_dssp             ----CCCBS--CCCEEETTSBHHHHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHTTTTC---------SGGGGCB
T ss_pred             CCHHHHcCC--CCcEECCCCcHHHHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHHHHHhcc---------CCcccCc
Confidence            567777765  46788999999999999999999999999964 78999999999875 43210         0000111


Q ss_pred             hhhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHH---
Q 014342          234 ISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDIL---  310 (426)
Q Consensus       234 i~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil---  310 (426)
                      +.                   ..|..+++++.+++++.+|++.|.+++++++||+|   +.|   +++|++|..|++   
T Consensus       128 v~-------------------~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd---~~~---~~~Giit~~dl~~~~  182 (282)
T 2yzq_A          128 IE-------------------PYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVD---SEG---NLVGIVDETDLLRDS  182 (282)
T ss_dssp             ST-------------------TTSBSCCCCEETTSBHHHHHHHHHTCSSSEEEEEC---TTS---CEEEEEEGGGGGGCG
T ss_pred             HH-------------------HHhCCCCEEECCCCCHHHHHHHHHHcCCcEEEEEc---CCC---eEEEEEEHHHHhhhh
Confidence            11                   12456788999999999999999999999999995   235   699999999998   


Q ss_pred             ---HHHHhhc---c--------ccC------CCccccccccccccccccccccCCCCCCCeEEEcCCCCHHHHHHHHHhc
Q 014342          311 ---KCICRHF---K--------HSS------SSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQA  370 (426)
Q Consensus       311 ---~~l~~~~---~--------~~~------~~~~~~~~~v~~l~i~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~  370 (426)
                         +++..+.   .        ...      ........+++++            |.++++++++++++.+|+++|.++
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i------------m~~~~~~v~~~~~l~~a~~~m~~~  250 (282)
T 2yzq_A          183 EIVRIMKSTELAASSEEEWILESHPTLLFEKFELQLPNKPVAEI------------MTRDVIVATPHMTVHEVALKMAKY  250 (282)
T ss_dssp             GGCC--------------------------------CCCBGGGT------------CBSSCCCBCTTSBHHHHHHHHHHH
T ss_pred             hhhhhhccchhhhhhhhhhhcccchHHHHhHhhhhhccCCHHHh------------cCCCCceeCCCCCHHHHHHHHHHc
Confidence               5442100   0        000      0001122333333            346888999999999999999999


Q ss_pred             CCcEeeEEcCCCcEEEEEeHHHHHHHHh
Q 014342          371 DVSSIPIVDDNDSLLDIYSRSDITALAK  398 (426)
Q Consensus       371 ~i~~lPVVd~~g~lvGiis~~DI~~~~~  398 (426)
                      +++++||+|++|+++|+||++||++.+.
T Consensus       251 ~~~~lpVvd~~~~lvGiit~~Dil~~~~  278 (282)
T 2yzq_A          251 SIEQLPVIRGEGDLIGLIRDFDLLKVLV  278 (282)
T ss_dssp             TCSEEEEEETTTEEEEEEEHHHHGGGGC
T ss_pred             CcceeEEECCCCCEEEEEeHHHHHHHHH
Confidence            9999999998889999999999997554

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=99.85  E-value=2.5e-20  Score=182.49  Aligned_cols=201  Identities=16%  Similarity=0.125  Sum_probs=150.7

Q ss_pred             cCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCc----EEEEeehHHHHHHHHHhccCCCCCChhhhcccchh
Q 014342          160 LLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGR----FVGVLSALDFILILRELGTNGSNLTEEELETHTIS  235 (426)
Q Consensus       160 ~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~----~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~  235 (426)
                      +|.....++++.++.++.+|++.|.+++++.+||+|+..++    ++|++|..|++..+......      ......++.
T Consensus       112 im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~~~~Givt~~dl~~~~~~~~~~------~~~~~~~v~  185 (334)
T 2qrd_G          112 IGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISMNCKE------TAMLRVPLN  185 (334)
T ss_dssp             HTCSCSSCCCBCTTSBHHHHHHHHHHSCCSEEEEEEEETTTTEEEEEEEEEHHHHHHHHHHHCGG------GGGCCCBGG
T ss_pred             hccCCCceeeeCCCCcHHHHHHHHHHCCceEEEEEeCCCCcCccceEEEeeHHHHHHHHHhhccc------hhhhhCcHH
Confidence            45454455888999999999999999999999999965445    99999999998776532110      001111111


Q ss_pred             hhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHh
Q 014342          236 AWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICR  315 (426)
Q Consensus       236 ~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~  315 (426)
                      .+       +         ..|.++++++.+++++.+|++.|.+++++++||+|   ++|   +++|+||..|+++++..
T Consensus       186 ~l-------~---------~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~~Vvd---~~~---~~~Giit~~dl~~~~~~  243 (334)
T 2qrd_G          186 QM-------T---------IGTWSNLATASMETKVYDVIKMLAEKNISAVPIVN---SEG---TLLNVYESVDVMHLIQD  243 (334)
T ss_dssp             GS-------S---------CSBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEC---TTC---BEEEEEETHHHHHHHTT
T ss_pred             Hh-------C---------CcccCCceEECCCCcHHHHHHHHHHcCCcEEEEEc---CCC---cEEEEEEHHHHHHHhhc
Confidence            11       0         02567888999999999999999999999999995   245   79999999999998754


Q ss_pred             hccccCCCccccccccccccccccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342          316 HFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (426)
Q Consensus       316 ~~~~~~~~~~~~~~~v~~l~i~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~  395 (426)
                      ...      .....++.++|....    .+  .++++++.+++++.+|+++|.+++++++||||++|+++|+||++||++
T Consensus       244 ~~~------~~~~~~v~~~m~~~~----~~--~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~l~Giit~~dil~  311 (334)
T 2qrd_G          244 GDY------SNLDLSVGEALLKRP----AN--FDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILN  311 (334)
T ss_dssp             SCG------GGGGSBHHHHHTTCC----TT--CCCCCEECTTCBHHHHHHHHHHSCCCEEEEECTTCBEEEEEEHHHHHH
T ss_pred             ccc------ccccCcHHHHHhccc----cc--CCCCEEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHHHH
Confidence            321      112344555442100    00  036789999999999999999999999999999999999999999999


Q ss_pred             HHhcc
Q 014342          396 LAKDK  400 (426)
Q Consensus       396 ~~~~~  400 (426)
                      .+...
T Consensus       312 ~~~~~  316 (334)
T 2qrd_G          312 YIIYD  316 (334)
T ss_dssp             HHHSC
T ss_pred             HHHhc
Confidence            87654

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=99.85  E-value=1.3e-20  Score=184.22  Aligned_cols=203  Identities=16%  Similarity=0.149  Sum_probs=152.1

Q ss_pred             cccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhh
Q 014342          158 YELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAW  237 (426)
Q Consensus       158 ~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~  237 (426)
                      .++|..  .+++++++.++.+|++.|.+++++.+||+|++.++++|+||..|++..+....... ..  ..+...++.. 
T Consensus       121 ~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~dl~~~~~~~~~~~-~~--~~~~~~~v~~-  194 (330)
T 2v8q_E          121 LQDSFK--PLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFITEF-PK--PEFMSKSLEE-  194 (330)
T ss_dssp             SSSSCC--CCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHHHHSCSS-SC--CGGGGSBHHH-
T ss_pred             hhcccC--CceEeCCCCCHHHHHHHHHHCCCCeEEEEeCCCCcEEEEEcHHHHHHHHHHHhhcc-Cc--hhhhcCCHHH-
Confidence            355654  58889999999999999999999999999963579999999999998775432211 01  1111111111 


Q ss_pred             HHHHHhhccccccCCCCCCCC-CCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhh
Q 014342          238 KVGKLQLNLKRQMDGNGRPCP-RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRH  316 (426)
Q Consensus       238 ~~~~~~~~~~~~~~g~~~~~~-~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~  316 (426)
                            +.          .|. .+++++.+++++.+|++.|.+++++++||+|   ++|   +++|+||..|+++.+...
T Consensus       195 ------~~----------v~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd---~~~---~l~Giit~~dl~~~~~~~  252 (330)
T 2v8q_E          195 ------LQ----------IGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVD---EKG---RVVDIYSKFDVINLAAEK  252 (330)
T ss_dssp             ------HT----------CSBCSSCCCEETTCBHHHHHHHHHHHCCSEEEEEC---TTS---BEEEEEEGGGTGGGGGSS
T ss_pred             ------hc----------ccCcCCceEECCCCCHHHHHHHHHHcCCCeEEEEC---CCC---cEEEEEEHHHHHHHHhcc
Confidence                  11          123 5678899999999999999999999999995   235   799999999999865432


Q ss_pred             ccccCCCccccccccccccccccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHH
Q 014342          317 FKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITAL  396 (426)
Q Consensus       317 ~~~~~~~~~~~~~~v~~l~i~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~  396 (426)
                      ..      .....++.+++-.      ...+.++++++.+++++.+|+++|.+++++++||+|++|+++|+||++||++.
T Consensus       253 ~~------~~~~~~v~~~~~~------~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~l~Giit~~Dil~~  320 (330)
T 2v8q_E          253 TY------NNLDVSVTKALQH------RSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQA  320 (330)
T ss_dssp             CC------CCCSSBHHHHGGG------CCSCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHH
T ss_pred             cc------ccccCcHHHHHhc------cccccCCCeEECCCCcHHHHHHHHHHCCCcEEEEEcCCCcEEEEEeHHHHHHH
Confidence            10      1123444444310      11223688899999999999999999999999999999999999999999997


Q ss_pred             Hhcc
Q 014342          397 AKDK  400 (426)
Q Consensus       397 ~~~~  400 (426)
                      +...
T Consensus       321 ~~~~  324 (330)
T 2v8q_E          321 LVLT  324 (330)
T ss_dssp             HHSS
T ss_pred             HHhh
Confidence            7654

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=99.81  E-value=3.2e-20  Score=177.03  Aligned_cols=177  Identities=16%  Similarity=0.291  Sum_probs=127.3

Q ss_pred             cccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchh
Q 014342          156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTIS  235 (426)
Q Consensus       156 ~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~  235 (426)
                      ++.|+|.  .++++++++.|+.+|+++|.++++.++||+|+ +++++|++|..|++..+.               ..+++
T Consensus         2 ~v~~im~--~~~~~v~~~~~~~~a~~~~~~~~~~~~pV~d~-~~~~~Giv~~~dl~~~~~---------------~~~v~   63 (282)
T 2yzq_A            2 RVKTIMT--QNPVTITLPATRNYALELFKKYKVRSFPVVNK-EGKLVGIISVKRILVNPD---------------EEQLA   63 (282)
T ss_dssp             BHHHHSE--ESCCCEESSCC------------CCEEEEECT-TCCEEEEEESSCC-------------------------
T ss_pred             chHHhcc--CCCeEECCCCcHHHHHHHHHHcCCCeEEEEcC-CCcEEEEEEHHHHHhhhc---------------cCCHH
Confidence            3456675  36788999999999999999999999999996 579999999999764321               00111


Q ss_pred             hhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH-HHH
Q 014342          236 AWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK-CIC  314 (426)
Q Consensus       236 ~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~-~l~  314 (426)
                      .                   .|.++++++.+++++.+|++.|.+++++++||+|+   +|   +++|++|..|+++ ++.
T Consensus        64 ~-------------------~m~~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~---~~---~~~Giit~~di~~~~~~  118 (282)
T 2yzq_A           64 M-------------------LVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDS---KG---KPVGILTVGDIIRRYFA  118 (282)
T ss_dssp             C-------------------CCBSCCCEEETTSBHHHHHHHHHHHTCSEEEEECT---TS---CEEEEEEHHHHHHHTTT
T ss_pred             H-------------------HcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcC---CC---EEEEEEEHHHHHHHHHh
Confidence            1                   24556788999999999999999999999999952   35   6999999999998 654


Q ss_pred             hhccccCCCccccccccccccccccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHH
Q 014342          315 RHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT  394 (426)
Q Consensus       315 ~~~~~~~~~~~~~~~~v~~l~i~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~  394 (426)
                      ...       .....++.++|            .++++++.+++++.+|++.|.+++++++||+|++|+++|+||.+||+
T Consensus       119 ~~~-------~~~~~~v~~~m------------~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~~Giit~~dl~  179 (282)
T 2yzq_A          119 KSE-------KYKGVEIEPYY------------QRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLL  179 (282)
T ss_dssp             TCS-------GGGGCBSTTTS------------BSCCCCEETTSBHHHHHHHHHTCSSSEEEEECTTSCEEEEEEGGGGG
T ss_pred             ccC-------CcccCcHHHHh------------CCCCEEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHh
Confidence            320       11233444444            24777899999999999999999999999999889999999999998

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=99.75  E-value=1.3e-18  Score=153.87  Aligned_cols=151  Identities=17%  Similarity=0.295  Sum_probs=111.5

Q ss_pred             HHHHHHHHHhccccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccC--
Q 014342          143 LSRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTN--  220 (426)
Q Consensus       143 ~~~~~~~~~l~~~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~--  220 (426)
                      +.++++.+.|.+.++.|+|..  ++++++++.|+.+|+++|.+++++++||+|+ +|+++|+||.+|++..+......  
T Consensus         6 ~~~~~~~~~l~~~~V~diM~~--~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~-~g~lvGiit~~Dll~~~~~~~~~~~   82 (170)
T 4esy_A            6 ARRRAIARAIRQVPIRDILTS--PVVTVREDDTLDAVAKTMLEHQIGCAPVVDQ-NGHLVGIITESDFLRGSIPFWIYEA   82 (170)
T ss_dssp             HHHHHHHHHHHTSBGGGGCCS--CCCCEETTSBHHHHHHHHHHTTCSEEEEECT-TSCEEEEEEGGGGGGGTCCTTHHHH
T ss_pred             HHHHHHHHHHcCCCHHHhcCC--CCcEECCcCcHHHHHHHHHHcCCeEEEEEcC-CccEEEEEEHHHHHHHHhhccccch
Confidence            357788999999999999975  7899999999999999999999999999996 57999999999987532110000  


Q ss_pred             ----CCCCChhhhcccchhhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCC
Q 014342          221 ----GSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGS  296 (426)
Q Consensus       221 ----~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~  296 (426)
                          ........     .....+......   .    ...|+++++++.+++++.+|+++|.+++++++||++    +| 
T Consensus        83 ~~~~~~~~~~~~-----~~~~~~~~~~~~---v----~~im~~~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd----~g-  145 (170)
T 4esy_A           83 SEILSRAIPAPE-----VEHLFETGRKLT---A----SAVMTQPVVTAAPEDSVGSIADQMRRHGIHRIPVVQ----DG-  145 (170)
T ss_dssp             HHHHTTTSCHHH-----HHHHHHHHTTCB---H----HHHCBCCSCCBCTTSBHHHHHHHHHHTTCSEEEEEE----TT-
T ss_pred             hhhhhhccchhh-----HHhhhccccccc---h----hhhcccCcccCCcchhHHHHHHHHHHcCCcEEEEEE----CC-
Confidence                00000000     000000000000   0    013678999999999999999999999999999995    26 


Q ss_pred             cceEEEEecHHhHHHHHHh
Q 014342          297 CQEILYLASLSDILKCICR  315 (426)
Q Consensus       297 ~~~lvGiit~~dil~~l~~  315 (426)
                        +++||||++||++++..
T Consensus       146 --~lvGivt~~Dil~~l~~  162 (170)
T 4esy_A          146 --VPVGIVTRRDLLKLLLL  162 (170)
T ss_dssp             --EEEEEEEHHHHTTTSCC
T ss_pred             --EEEEEEEHHHHHHHHHh
Confidence              79999999999987653

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=99.71  E-value=9e-17  Score=150.57  Aligned_cols=215  Identities=14%  Similarity=0.223  Sum_probs=129.4

Q ss_pred             cccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccc
Q 014342          154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHT  233 (426)
Q Consensus       154 ~~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~  233 (426)
                      ..++.|+|..  .++++.++.++.+|+++|.+++++++||+|+ +++++|++|..|++..+.......    .......+
T Consensus         6 ~~~v~~im~~--~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~-~~~l~Giit~~di~~~~~~~~~~~----~~~~~~~~   78 (245)
T 3l2b_A            6 KLKVEDLEMD--KIAPLAPEVSLKMAWNIMRDKNLKSIPVADG-NNHLLGMLSTSNITATYMDIWDSN----ILAKSATS   78 (245)
T ss_dssp             CCBGGGSCCB--CCCCBCTTCBHHHHHHHHHHTTCSEEEEECT-TCBEEEEEEHHHHHHHHHCCCCTT----HHHHTTCC
T ss_pred             cCcHHHhcCC--CCcEECCCCcHHHHHHHHHHcCCCEEEEEcC-CCEEEEEEEHHHHHHHHHHhhhhh----hhhhccCC
Confidence            3578899965  5788999999999999999999999999995 479999999999987764321100    00000001


Q ss_pred             hhhhHHHHHhh--cc-c--cccCC------------CCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCC
Q 014342          234 ISAWKVGKLQL--NL-K--RQMDG------------NGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGS  296 (426)
Q Consensus       234 i~~~~~~~~~~--~~-~--~~~~g------------~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~  296 (426)
                      +..+.......  .. .  ....|            ...+....++.+. +  -.++...+++.+++++++.++......
T Consensus        79 ~~~v~~~l~~~~l~~~~~~~~~~g~~~i~a~~~~~~~~~~~~~~ivIvg-d--r~~~~~~~i~~~~~~liit~~~~~~~~  155 (245)
T 3l2b_A           79 LDNILDTLSAEAQNINEERKVFPGKVVVAAMQAESLKEFISEGDIAIAG-D--RAEIQAELIELKVSLLIVTGGHTPSKE  155 (245)
T ss_dssp             HHHHHHHTTCEEEECCTTCCCCCSCEEECCSCGGGGGGTCCTTCEEEEC-S--CHHHHHHHHHTTCSEEEECTTCCCCHH
T ss_pred             HHHHHHHhCCEEEeccCCcceeeeeEEEEeCChHHHHhcCCCCCEEEEC-C--CHHHHHHHHHcCCCEEEECCCCCCCHH
Confidence            11111100000  00 0  00000            0001123344332 2  368889999999999998842111000


Q ss_pred             ------cceEEEEecHHhHHHHHHhhccccCCCccccccccccccccccccccCCCCCCCeEEEcCCCCHHHHHHHHHhc
Q 014342          297 ------CQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQA  370 (426)
Q Consensus       297 ------~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~  370 (426)
                            ...+-.+.|..|........         ....+++++|..           ++++++++++++.+|+++|.++
T Consensus       156 v~~~a~~~~~~~i~t~~d~~~~~~~~---------~~~~~v~~im~~-----------~~~~~~~~~~~~~~~~~~m~~~  215 (245)
T 3l2b_A          156 IIELAKKNNITVITTPHDSFTASRLI---------VQSLPVDYVMTK-----------DNLVAVSTDDLVEDVKVTMSET  215 (245)
T ss_dssp             HHHHHHHHTCEEEECSSCHHHHHHHG---------GGGSBHHHHSBC-----------TTCCCEETTSBHHHHHHHHHHH
T ss_pred             HHHHHHHcCCeEEEeCCChHHHHHHH---------hcCCceeeEecC-----------CccEEECCCCcHHHHHHHHHhc
Confidence                  00134455555544432211         113344444420           4778999999999999999999


Q ss_pred             CCcEeeEEcCCCcEEEEEeHHHHHHHHh
Q 014342          371 DVSSIPIVDDNDSLLDIYSRSDITALAK  398 (426)
Q Consensus       371 ~i~~lPVVd~~g~lvGiis~~DI~~~~~  398 (426)
                      +++++||||++|+++|+||++||++..+
T Consensus       216 ~~~~~pVvd~~~~~~Giit~~dll~~~~  243 (245)
T 3l2b_A          216 RYSNYPVIDENNKVVGSIARFHLISTHK  243 (245)
T ss_dssp             CCSEEEEECTTCBEEEEEECC-------
T ss_pred             CCceEEEEcCCCeEEEEEEHHHhhchhh
Confidence            9999999999999999999999997654

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=99.69  E-value=2.4e-17  Score=145.80  Aligned_cols=129  Identities=21%  Similarity=0.353  Sum_probs=96.5

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhcccc-----CCCcc-----
Q 014342          256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHS-----SSSLP-----  325 (426)
Q Consensus       256 ~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~-----~~~~~-----  325 (426)
                      .|+++++++.+++++.+|++.|.+++++++||+|   ++|   +++|+||.+||++.+.......     .....     
T Consensus        23 iM~~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd---~~g---~lvGiit~~Dll~~~~~~~~~~~~~~~~~~~~~~~~~   96 (170)
T 4esy_A           23 ILTSPVVTVREDDTLDAVAKTMLEHQIGCAPVVD---QNG---HLVGIITESDFLRGSIPFWIYEASEILSRAIPAPEVE   96 (170)
T ss_dssp             GCCSCCCCEETTSBHHHHHHHHHHTTCSEEEEEC---TTS---CEEEEEEGGGGGGGTCCTTHHHHHHHHTTTSCHHHHH
T ss_pred             hcCCCCcEECCcCcHHHHHHHHHHcCCeEEEEEc---CCc---cEEEEEEHHHHHHHHhhccccchhhhhhhccchhhHH
Confidence            3688999999999999999999999999999995   346   7999999999987543221000     00000     


Q ss_pred             ccccccccccccccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHh
Q 014342          326 ILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  398 (426)
Q Consensus       326 ~~~~~v~~l~i~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~  398 (426)
                      .+........       +.+.|.++++++++++++.+|+++|.+++++++||+| +|+++|+||++||++++.
T Consensus        97 ~~~~~~~~~~-------v~~im~~~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd-~g~lvGivt~~Dil~~l~  161 (170)
T 4esy_A           97 HLFETGRKLT-------ASAVMTQPVVTAAPEDSVGSIADQMRRHGIHRIPVVQ-DGVPVGIVTRRDLLKLLL  161 (170)
T ss_dssp             HHHHHHTTCB-------HHHHCBCCSCCBCTTSBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHTTTSC
T ss_pred             hhhccccccc-------hhhhcccCcccCCcchhHHHHHHHHHHcCCcEEEEEE-CCEEEEEEEHHHHHHHHH
Confidence            0000000111       1223447899999999999999999999999999998 599999999999997543

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=99.69  E-value=1e-16  Score=140.08  Aligned_cols=120  Identities=17%  Similarity=0.223  Sum_probs=97.5

Q ss_pred             CCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccccc
Q 014342          258 PRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLG  337 (426)
Q Consensus       258 ~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~  337 (426)
                      ...++++.+++|+.+|+.+|.+++++++||+|   +++   +++|++|.+|+++++.......   ......++.++|  
T Consensus        24 ~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd---~~~---~lvGiit~~Di~~~~~~~~~~~---~~~~~~~v~~im--   92 (156)
T 3k6e_A           24 AKNLAVLIDTHNADHATLLLSQMTYTRVPVVT---DEK---QFVGTIGLRDIMAYQMEHDLSQ---EIMADTDIVHMT--   92 (156)
T ss_dssp             TTSSCCEETTSBHHHHHHHHTTSSSSEEEEEC---C-C---BEEEEEEHHHHHHHHHHHTCCH---HHHTTSBGGGTC--
T ss_pred             hhHeEEECCcCCHHHHHHHHHHcCCcEEEEEc---CCC---cEEEEEEecchhhhhhhccccc---ccccccCHHHhh--
Confidence            45788999999999999999999999999995   235   7999999999999876542210   112234454444  


Q ss_pred             ccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHhcc
Q 014342          338 TWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDK  400 (426)
Q Consensus       338 ~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~~~  400 (426)
                                .++++++++++++.+|+++|.++++  +||||++|+++|+||++||++.+...
T Consensus        93 ----------~~~~~~v~~~~~l~~~~~~m~~~~~--lpVVd~~g~l~GiiT~~Dil~~~~~~  143 (156)
T 3k6e_A           93 ----------KTDVAVVSPDFTITEVLHKLVDESF--LPVVDAEGIFQGIITRKSILKAVNAL  143 (156)
T ss_dssp             ----------BCSCCCBCTTCCHHHHHHHTTTSSE--EEEECTTSBEEEEEEHHHHHHHHHHH
T ss_pred             ----------cCCceecccccHHHHHHHHHHHcCC--eEEEecCCEEEEEEEHHHHHHHHHHH
Confidence                      3688899999999999999998775  99999999999999999999977543

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=99.68  E-value=2e-16  Score=133.27  Aligned_cols=113  Identities=12%  Similarity=0.151  Sum_probs=95.3

Q ss_pred             CCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccccccc
Q 014342          259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  338 (426)
Q Consensus       259 ~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~  338 (426)
                      .+++++.+++++.+|++.|.+++++++||+++  +.+   +++|++|.+|+++.+.....         ..++.++|   
T Consensus        16 ~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~--~~~---~~~Givt~~dl~~~~~~~~~---------~~~v~~~m---   78 (130)
T 3i8n_A           16 PVVFRVDATMTINEFLDKHKDTPFSRPLVYSE--QKD---NIIGFVHRLELFKMQQSGSG---------QKQLGAVM---   78 (130)
T ss_dssp             CCCCEEETTSBHHHHHHHTTTCSCSCCEEESS--STT---CEEEECCHHHHHHHHHTTTT---------TSBHHHHS---
T ss_pred             HHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeC--CCC---cEEEEEEHHHHHHHHhcCCC---------cCCHHHHh---
Confidence            45678999999999999999999999999952  225   69999999999998764321         23444444   


Q ss_pred             cccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHh
Q 014342          339 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  398 (426)
Q Consensus       339 ~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~  398 (426)
                                ++++++.+++++.+|+++|.+++++.+||+|++|+++|+||+.||++.+.
T Consensus        79 ----------~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~vGivt~~dil~~l~  128 (130)
T 3i8n_A           79 ----------RPIQVVLNNTALPKVFDQMMTHRLQLALVVDEYGTVLGLVTLEDIFEHLV  128 (130)
T ss_dssp             ----------EECCEEETTSCHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred             ----------cCCcCcCCCCcHHHHHHHHHHcCCeEEEEEcCCCCEEEEEEHHHHHHHHc
Confidence                      25678999999999999999999999999999999999999999998654

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=99.68  E-value=4.3e-16  Score=134.22  Aligned_cols=115  Identities=14%  Similarity=0.156  Sum_probs=97.8

Q ss_pred             CCC--CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccc
Q 014342          257 CPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSI  334 (426)
Q Consensus       257 ~~~--~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l  334 (426)
                      |++  +++++.+++++.+|++.|.+++++++||+++  +.|   +++|++|..|+++.+....          ..++.++
T Consensus        29 M~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~--~~~---~lvGivt~~dl~~~~~~~~----------~~~v~~~   93 (148)
T 3lv9_A           29 MVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRK--NKD---DILGFVHIRDLYNQKINEN----------KIELEEI   93 (148)
T ss_dssp             SEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESS--STT---SEEEEEEHHHHHHHHHHHS----------CCCGGGT
T ss_pred             cccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcC--CCC---cEEEEEEHHHHHHHHhcCC----------CccHHHh
Confidence            455  7889999999999999999999999999952  225   6999999999999876542          2334444


Q ss_pred             cccccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHhc
Q 014342          335 QLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  399 (426)
Q Consensus       335 ~i~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~~  399 (426)
                      |             ++++++.+++++.+|+++|.+++++.+||+|++|+++|+||+.||++.+..
T Consensus        94 m-------------~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~dil~~l~~  145 (148)
T 3lv9_A           94 L-------------RDIIYISENLTIDKALERIRKEKLQLAIVVDEYGGTSGVVTIEDILEEIVG  145 (148)
T ss_dssp             C-------------BCCEEEETTSBHHHHHHHHHHHTCSEEEEECTTSSEEEEEEHHHHHHHHHH
T ss_pred             c-------------CCCeEECCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhC
Confidence            3             377899999999999999999999999999999999999999999987654

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=99.68  E-value=1.9e-16  Score=133.75  Aligned_cols=116  Identities=8%  Similarity=0.119  Sum_probs=96.4

Q ss_pred             CCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccccccc
Q 014342          259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  338 (426)
Q Consensus       259 ~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~  338 (426)
                      .+++++.+++++.+|++.|.+++++++||++  ++.+   +++|++|.+|+++++....       .+...++.++|   
T Consensus        12 ~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~--~~~~---~lvGivt~~dl~~~~~~~~-------~~~~~~v~~~m---   76 (130)
T 3hf7_A           12 NEIVGIDINDDWKSIVRQLTHSPHGRIVLYR--DSLD---DAISMLRVREAYRLMTEKK-------EFTKEIMLRAA---   76 (130)
T ss_dssp             GGCCEEETTSCHHHHHHHHHTCSSSEEEEES--SSGG---GEEEEEEHHHHHHHHTSSS-------CCCHHHHHHHS---
T ss_pred             HHEEEEcCCCCHHHHHHHHHHCCCCeEEEEc--CCCC---cEEEEEEHHHHHHHHhccC-------ccchhhHHHhc---
Confidence            3578999999999999999999999999995  2235   7999999999999875421       11123444443   


Q ss_pred             cccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHhc
Q 014342          339 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  399 (426)
Q Consensus       339 ~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~~  399 (426)
                                ++++++.+++++.+|+++|.+++++.+||+|++|+++|+||+.||++.+..
T Consensus        77 ----------~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l~g  127 (130)
T 3hf7_A           77 ----------DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIVG  127 (130)
T ss_dssp             ----------BCCCEEETTCBHHHHHHHHHHHCCCEEEEECTTSCEEEEEEHHHHHHHHHC
T ss_pred             ----------cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEcCCCCEEEEeeHHHHHHHHhC
Confidence                      267789999999999999999999999999999999999999999987654

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=99.67  E-value=3.9e-16  Score=129.51  Aligned_cols=114  Identities=19%  Similarity=0.345  Sum_probs=97.4

Q ss_pred             CCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccccc
Q 014342          257 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL  336 (426)
Q Consensus       257 ~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i  336 (426)
                      |.++++++.+++++.+|++.|.+++++++||++   ++|   +++|++|..|+++++....           .++.+++.
T Consensus         7 m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd---~~~---~~~G~vt~~dl~~~~~~~~-----------~~v~~~~~   69 (122)
T 3kpb_A            7 LSKPPITAHSNISIMEAAKILIKHNINHLPIVD---EHG---KLVGIITSWDIAKALAQNK-----------KTIEEIMT   69 (122)
T ss_dssp             CCSCCCCEETTSBHHHHHHHHHHHTCSCEEEEC---TTS---BEEEEECHHHHHHHHHTTC-----------CBGGGTSB
T ss_pred             hCCCCEEeCCCCcHHHHHHHHHHcCCCeEEEEC---CCC---CEEEEEEHHHHHHHHHhcc-----------cCHHHHhc
Confidence            467788999999999999999999999999995   245   7999999999999876431           24444442


Q ss_pred             cccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHhc
Q 014342          337 GTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  399 (426)
Q Consensus       337 ~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~~  399 (426)
                                  +++.++.+++++.+|+++|.+++++++||+|++|+++|+||+.||++.+.+
T Consensus        70 ------------~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Givt~~dl~~~l~~  120 (122)
T 3kpb_A           70 ------------RNVITAHEDEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDISRLFGG  120 (122)
T ss_dssp             ------------SSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHC-
T ss_pred             ------------CCCeEECCCCCHHHHHHHHHHhCCCeEEEECCCCCEEEEEeHHHHHHHhhc
Confidence                        467789999999999999999999999999998999999999999987654

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=99.67  E-value=2.7e-16  Score=132.54  Aligned_cols=126  Identities=13%  Similarity=0.249  Sum_probs=101.3

Q ss_pred             hccccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcc
Q 014342          152 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELET  231 (426)
Q Consensus       152 l~~~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~  231 (426)
                      |.+.++.|+|.....+++++++.|+.+|+++|.++++.++||+|++.++++|+||..|++..+....           ..
T Consensus         3 l~~~~v~~iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~~~-----------~~   71 (130)
T 3i8n_A            3 AQDVPVTQVMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLELFKMQQSGS-----------GQ   71 (130)
T ss_dssp             ----CCTTTSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESSSTTCEEEECCHHHHHHHHHTTT-----------TT
T ss_pred             cCcCCHhhCCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCcEEEEEEHHHHHHHHhcCC-----------Cc
Confidence            6778999999887788899999999999999999999999999965479999999999987654211           01


Q ss_pred             cchhhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342          232 HTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (426)
Q Consensus       232 ~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~  311 (426)
                      .++..+                   | ++++++.+++++.+|++.|.+++++++||+|   ++|   +++|+||..||++
T Consensus        72 ~~v~~~-------------------m-~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd---~~g---~~vGivt~~dil~  125 (130)
T 3i8n_A           72 KQLGAV-------------------M-RPIQVVLNNTALPKVFDQMMTHRLQLALVVD---EYG---TVLGLVTLEDIFE  125 (130)
T ss_dssp             SBHHHH-------------------S-EECCEEETTSCHHHHHHHHHHHTCCEEEEEC---TTS---CEEEEEEHHHHHH
T ss_pred             CCHHHH-------------------h-cCCcCcCCCCcHHHHHHHHHHcCCeEEEEEc---CCC---CEEEEEEHHHHHH
Confidence            112222                   3 3467899999999999999999999999995   345   7999999999999


Q ss_pred             HHH
Q 014342          312 CIC  314 (426)
Q Consensus       312 ~l~  314 (426)
                      .+.
T Consensus       126 ~l~  128 (130)
T 3i8n_A          126 HLV  128 (130)
T ss_dssp             HHH
T ss_pred             HHc
Confidence            875

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=99.67  E-value=3.2e-16  Score=136.88  Aligned_cols=138  Identities=18%  Similarity=0.246  Sum_probs=106.6

Q ss_pred             HHHHHhccccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCCh
Q 014342          147 RISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTE  226 (426)
Q Consensus       147 ~~~~~l~~~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~  226 (426)
                      .+.+||. .++.++|.....+++++.+.|+.+|+++|.+++++++||+|+ .++++|+||.+|++..+.....     ..
T Consensus         8 ~~e~~l~-~~~~~iM~P~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~-~~~lvGiit~~Di~~~~~~~~~-----~~   80 (156)
T 3k6e_A            8 EFETFLL-GQEETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTD-EKQFVGTIGLRDIMAYQMEHDL-----SQ   80 (156)
T ss_dssp             HHHHHHH-TTGGGGEEETTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC--CBEEEEEEHHHHHHHHHHHTC-----CH
T ss_pred             HHHHHhh-ccHHHhCcchhHeEEECCcCCHHHHHHHHHHcCCcEEEEEcC-CCcEEEEEEecchhhhhhhccc-----cc
Confidence            3445554 457788877778999999999999999999999999999985 5799999999999877654321     11


Q ss_pred             hhhcccchhhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecH
Q 014342          227 EELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASL  306 (426)
Q Consensus       227 ~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~  306 (426)
                      ..+...++..                   .|.++++++.+++++.+|++.|.+++  .+||+|   ++|   +++|+||.
T Consensus        81 ~~~~~~~v~~-------------------im~~~~~~v~~~~~l~~~~~~m~~~~--~lpVVd---~~g---~l~GiiT~  133 (156)
T 3k6e_A           81 EIMADTDIVH-------------------MTKTDVAVVSPDFTITEVLHKLVDES--FLPVVD---AEG---IFQGIITR  133 (156)
T ss_dssp             HHHTTSBGGG-------------------TCBCSCCCBCTTCCHHHHHHHTTTSS--EEEEEC---TTS---BEEEEEEH
T ss_pred             ccccccCHHH-------------------hhcCCceecccccHHHHHHHHHHHcC--CeEEEe---cCC---EEEEEEEH
Confidence            1221212111                   35788899999999999999999876  499995   346   79999999


Q ss_pred             HhHHHHHHhhcc
Q 014342          307 SDILKCICRHFK  318 (426)
Q Consensus       307 ~dil~~l~~~~~  318 (426)
                      .||++.+.....
T Consensus       134 ~Dil~~~~~~~~  145 (156)
T 3k6e_A          134 KSILKAVNALLH  145 (156)
T ss_dssp             HHHHHHHHHHSC
T ss_pred             HHHHHHHHHHhc
Confidence            999999876544

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=99.67  E-value=9.8e-17  Score=136.47  Aligned_cols=116  Identities=12%  Similarity=0.167  Sum_probs=94.4

Q ss_pred             CCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccccccc
Q 014342          259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  338 (426)
Q Consensus       259 ~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~  338 (426)
                      .+++++.+++++.+|++.|.+++++++||+++  +.+   +++|+||..|+++++....        ....++.++|   
T Consensus        13 ~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~--~~~---~~vGivt~~dl~~~~~~~~--------~~~~~v~~~m---   76 (136)
T 3lfr_A           13 SQMISIKATQTPREFLPAVIDAAHSRYPVIGE--SHD---DVLGVLLAKDLLPLILKAD--------GDSDDVKKLL---   76 (136)
T ss_dssp             GGCCCEETTCCHHHHHHHHHHHCCSEEEEESS--STT---CEEEEEEGGGGGGGGGSSS--------GGGCCGGGTC---
T ss_pred             HHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcC--CCC---cEEEEEEHHHHHHHHHhcc--------CCCcCHHHHc---
Confidence            46788999999999999999999999999952  224   6999999999998754211        1234455544   


Q ss_pred             cccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHhcc
Q 014342          339 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDK  400 (426)
Q Consensus       339 ~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~~~  400 (426)
                                ++++++.+++++.+|+++|.+++++.+||+|++|+++|+||++||++.+...
T Consensus        77 ----------~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l~~~  128 (136)
T 3lfr_A           77 ----------RPATFVPESKRLNVLLREFRANHNHMAIVIDEYGGVAGLVTIEDVLEQIVGD  128 (136)
T ss_dssp             ----------BCCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHTTC---
T ss_pred             ----------CCCeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhCC
Confidence                      2577999999999999999999999999999999999999999999865543

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=99.67  E-value=2.5e-16  Score=132.62  Aligned_cols=112  Identities=12%  Similarity=0.186  Sum_probs=93.1

Q ss_pred             CCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccccccc
Q 014342          259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  338 (426)
Q Consensus       259 ~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~  338 (426)
                      .+++++.+++++.+|++.|.+++++++||+++  +.+   +++|++|..|+++++..           ...++.++|   
T Consensus        15 ~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~--~~~---~~~Givt~~dl~~~~~~-----------~~~~v~~~m---   75 (129)
T 3jtf_A           15 SRMDLLDISQPLPQLLATIIETAHSRFPVYED--DRD---NIIGILLAKDLLRYMLE-----------PALDIRSLV---   75 (129)
T ss_dssp             GGCCCEETTSCHHHHHHHHHHSCCSEEEEESS--STT---CEEEEEEGGGGGGGGTC-----------TTSCGGGGC---
T ss_pred             HHeEEECCCCCHHHHHHHHHHcCCCEEEEEcC--CCC---cEEEEEEHHHHHhHhcc-----------CCcCHHHHh---
Confidence            56788999999999999999999999999952  225   69999999999876431           123344443   


Q ss_pred             cccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHhc
Q 014342          339 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  399 (426)
Q Consensus       339 ~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~~  399 (426)
                                ++++++.+++++.+|+++|.+++++.+||+|++|+++|+||+.||++.+..
T Consensus        76 ----------~~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~g~~~Giit~~Dil~~l~g  126 (129)
T 3jtf_A           76 ----------RPAVFIPEVKRLNVLLREFRASRNHLAIVIDEHGGISGLVTMEDVLEQIVG  126 (129)
T ss_dssp             ----------BCCCEEETTCBHHHHHHHHHTSSCCEEEEECC-CCEEEEEEHHHHHHHHHH
T ss_pred             ----------CCCeEeCCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhC
Confidence                      256789999999999999999999999999999999999999999987654

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=99.66  E-value=1.8e-16  Score=133.10  Aligned_cols=116  Identities=17%  Similarity=0.199  Sum_probs=97.0

Q ss_pred             CCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccccc
Q 014342          257 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL  336 (426)
Q Consensus       257 ~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i  336 (426)
                      |.+++.++.+++++.+|++.|.+++++++||+|   + |   +++|++|..|+++.+.....        ...++.++|.
T Consensus        11 m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd---~-~---~~~Givt~~dl~~~~~~~~~--------~~~~v~~~m~   75 (128)
T 3gby_A           11 AETDYPVFTLGGSTADAARRLAASGCACAPVLD---G-E---RYLGMVHLSRLLEGRKGWPT--------VKEKLGEELL   75 (128)
T ss_dssp             CBCCSCCEETTSBHHHHHHHHHHHTCSEEEEEE---T-T---EEEEEEEHHHHHTTCSSSCC--------TTCBCCGGGC
T ss_pred             hcCCcceECCCCCHHHHHHHHHHCCCcEEEEEE---C-C---EEEEEEEHHHHHHHHhhCCc--------ccCcHHHHcc
Confidence            567788999999999999999999999999996   2 5   79999999999875432211        1134444442


Q ss_pred             cccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHhc
Q 014342          337 GTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  399 (426)
Q Consensus       337 ~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~~  399 (426)
                                  +++.++.+++++.+|+++|.+++++++||+|++|+++|+||++||++.+.+
T Consensus        76 ------------~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~g~~~Giit~~dll~~l~~  126 (128)
T 3gby_A           76 ------------ETVRSYRPGEQLFDNLISVAAAKCSVVPLADEDGRYEGVVSRKRILGFLAE  126 (128)
T ss_dssp             ------------BCCCCBCTTSBGGGSHHHHHHCSSSEEEEECTTCBEEEEEEHHHHHHHHHT
T ss_pred             ------------CCCcEECCCCCHHHHHHHHHhCCCcEEEEECCCCCEEEEEEHHHHHHHHHh
Confidence                        467789999999999999999999999999999999999999999987754

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=99.66  E-value=1.7e-16  Score=133.22  Aligned_cols=111  Identities=13%  Similarity=0.162  Sum_probs=92.7

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccccccc
Q 014342          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (426)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  339 (426)
                      +++++.+++++.+|++.|.+++++++||+++  +.|   +++|++|..|+++.+....         ...++.++|    
T Consensus        14 ~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~--~~~---~~vGivt~~dl~~~~~~~~---------~~~~v~~~m----   75 (127)
T 3nqr_A           14 QMITLKRNQTLDECLDVIIESAHSRFPVISE--DKD---HIEGILMAKDLLPFMRSDA---------EAFSMDKVL----   75 (127)
T ss_dssp             GCCCEETTCCHHHHHHHHHHHCCSEEEEESS--STT---CEEEEEEGGGGGGGGSTTC---------CCCCHHHHC----
T ss_pred             HeEEEcCCCCHHHHHHHHHhCCCCEEEEEcC--CCC---cEEEEEEHHHHHHHHhccC---------CCCCHHHHc----
Confidence            4788999999999999999999999999952  225   6999999999988654221         133444444    


Q ss_pred             ccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHH
Q 014342          340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA  397 (426)
Q Consensus       340 ~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~  397 (426)
                               +++.++.+++++.+|+++|.+++++.+||+|++|+++|+||++||++.+
T Consensus        76 ---------~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Giit~~dll~~l  124 (127)
T 3nqr_A           76 ---------RTAVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELI  124 (127)
T ss_dssp             ---------BCCCEEETTCBHHHHHHHHHHTTCCEEEEECTTSCEEEEEEHHHHHHHC
T ss_pred             ---------CCCeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHH
Confidence                     2466899999999999999999999999999999999999999999754

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=99.65  E-value=1.3e-15  Score=134.95  Aligned_cols=117  Identities=10%  Similarity=0.082  Sum_probs=99.2

Q ss_pred             CC--CCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccc
Q 014342          257 CP--RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSI  334 (426)
Q Consensus       257 ~~--~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l  334 (426)
                      |+  .+++++.+++++.+|++.|.+++++++||+++  +.+   +++|+||..|+++.+....          ..++.++
T Consensus        48 M~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~--~~~---~lvGivt~~dl~~~~~~~~----------~~~v~~i  112 (172)
T 3lhh_A           48 MVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRN--NVD---DMVGIISAKQLLSESIAGE----------RLELVDL  112 (172)
T ss_dssp             SEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESS--STT---SEEEEEEHHHHHHHHHTTC----------CCCGGGG
T ss_pred             CccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeC--CCC---eEEEEEEHHHHHHHHhhcC----------cccHHHH
Confidence            55  67789999999999999999999999999952  225   6999999999999875431          2344544


Q ss_pred             cccccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHhccc
Q 014342          335 QLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKA  401 (426)
Q Consensus       335 ~i~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~~~~  401 (426)
                      |             ++++++.+++++.+|+++|.+++++.+||+|++|+++|+||+.||++.+....
T Consensus       113 m-------------~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dil~~l~~~~  166 (172)
T 3lhh_A          113 V-------------KNCNFVPNSLSGMELLEHFRTTGSQMVFVVDEYGDLKGLVTLQDMMDALTGEF  166 (172)
T ss_dssp             C-------------BCCEEEETTCCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHTTC
T ss_pred             h-------------cCCeEeCCCCCHHHHHHHHHHcCCeEEEEEeCCCCEEEEeeHHHHHHHHhCCC
Confidence            4             37789999999999999999999999999999999999999999999876544

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=99.65  E-value=7.7e-16  Score=128.18  Aligned_cols=118  Identities=18%  Similarity=0.231  Sum_probs=97.7

Q ss_pred             CCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccccc
Q 014342          257 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL  336 (426)
Q Consensus       257 ~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i  336 (426)
                      |.++++++.+++++.+|++.|.+++.+++||+|    +|   +++|++|..|+++++.....       ....++.+++.
T Consensus         7 m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd----~~---~~~G~it~~dl~~~~~~~~~-------~~~~~v~~~m~   72 (125)
T 1pbj_A            7 MVTDVDTIDITASLEDVLRNYVENAKGSSVVVK----EG---VRVGIVTTWDVLEAIAEGDD-------LAEVKVWEVME   72 (125)
T ss_dssp             CBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEE----TT---EEEEEEEHHHHHHHHHHTCC-------TTTSBHHHHCB
T ss_pred             cCCCceEECCCCcHHHHHHHHHHcCCCEEEEEe----CC---eeEEEEeHHHHHHHHhcCCc-------ccccCHHHHcC
Confidence            466788999999999999999999999999995    35   79999999999988765321       12344555442


Q ss_pred             cccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHhccc
Q 014342          337 GTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKA  401 (426)
Q Consensus       337 ~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~~~~  401 (426)
                                  +++.++.+++++.+|+++|.+++++++||+|+ |+++|+||++||++.+..+.
T Consensus        73 ------------~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~-~~~~Gvit~~dl~~~l~~~~  124 (125)
T 1pbj_A           73 ------------RDLVTISPRATIKEAAEKMVKNVVWRLLVEED-DEIIGVISATDILRAKMAKR  124 (125)
T ss_dssp             ------------CGGGEECTTSCHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHHC---
T ss_pred             ------------CCCeEECCCCCHHHHHHHHHhcCCcEEEEEEC-CEEEEEEEHHHHHHHHHhcc
Confidence                        46779999999999999999999999999998 99999999999999876543

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=99.65  E-value=5.5e-16  Score=134.44  Aligned_cols=116  Identities=12%  Similarity=0.146  Sum_probs=96.8

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCCeeEEE-ecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccccccc
Q 014342          260 PLVQAGPYDSLKEVALKILQNKVATVPII-HSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  338 (426)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVv-d~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~  338 (426)
                      +++++.+++++.+|++.|.+++++++||+ ++  +.|   +++|+||..|+++++....          ..++.++|   
T Consensus        31 ~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~--~~~---~lvGivt~~dl~~~~~~~~----------~~~v~~~m---   92 (153)
T 3oco_A           31 SMSVVDVDETIADALLLYLEEQYSRFPVTADN--DKD---KIIGYAYNYDIVRQARIDD----------KAKISTIM---   92 (153)
T ss_dssp             GCCCEETTSBHHHHHHHHHHHCCSEEEEEETT--EEE---EEEEEEEHHHHHHHHHHHT----------TSBGGGTC---
T ss_pred             heEEEcCCCCHHHHHHHHHhCCCCEEEEEECC--CCC---cEEEEEEHHHHHhHHhcCC----------CCcHHHHh---
Confidence            67889999999999999999999999999 42  235   7999999999999876431          23444443   


Q ss_pred             cccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHhccccc
Q 014342          339 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYA  403 (426)
Q Consensus       339 ~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~~~~~~  403 (426)
                                ++++++.+++++.+|+++|.+++++.+||+|++|+++|+||+.||++.+......
T Consensus        93 ----------~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~~vGivt~~dil~~l~~~~~d  147 (153)
T 3oco_A           93 ----------RDIVSVPENMKVPDVMEEMSAHRVPMAIVIDEYGGTSGIITDKDVYEELFGNLRD  147 (153)
T ss_dssp             ----------BCCEEEETTSBHHHHHHHHHHTTCSCEEEECTTSCEEEEECHHHHHHHHHC----
T ss_pred             ----------CCCeEECCCCCHHHHHHHHHHcCCcEEEEEeCCCCEEEEeeHHHHHHHHhccCCC
Confidence                      3778999999999999999999999999999999999999999999987765443

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=99.65  E-value=1.1e-15  Score=128.87  Aligned_cols=117  Identities=21%  Similarity=0.333  Sum_probs=99.2

Q ss_pred             CCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccccc
Q 014342          257 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL  336 (426)
Q Consensus       257 ~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i  336 (426)
                      |.++++++.+++++.+|++.|.+++++++||+|    +|   +++|++|..|+++++.....        ...++.+++.
T Consensus        10 m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd----~~---~~~Givt~~dl~~~~~~~~~--------~~~~v~~~~~   74 (133)
T 2ef7_A           10 MKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVD----GN---KPVGIITERDIVKAIGKGKS--------LETKAEEFMT   74 (133)
T ss_dssp             SBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEE----TT---EEEEEEEHHHHHHHHHTTCC--------TTCBGGGTSE
T ss_pred             ccCCCEEECCCCcHHHHHHHHHhcCCCEEEEEE----CC---EEEEEEcHHHHHHHHhcCCC--------cccCHHHHcC
Confidence            567788999999999999999999999999995    35   79999999999988764321        1344555442


Q ss_pred             cccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHhcc
Q 014342          337 GTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDK  400 (426)
Q Consensus       337 ~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~~~  400 (426)
                                  +++.++.+++++.+|+++|.+++++++||+|++|+++|+||+.||++.+.+.
T Consensus        75 ------------~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~~~  126 (133)
T 2ef7_A           75 ------------ASLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAIDDM  126 (133)
T ss_dssp             ------------ECCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHH
T ss_pred             ------------CCCEEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHHHH
Confidence                        3677899999999999999999999999999899999999999999877654

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=99.64  E-value=1.7e-15  Score=130.39  Aligned_cols=126  Identities=13%  Similarity=0.184  Sum_probs=105.3

Q ss_pred             hccccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcc
Q 014342          152 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELET  231 (426)
Q Consensus       152 l~~~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~  231 (426)
                      |...++.|+|.....+++++++.|+.+|++.|.++++.++||+|++.++++|+||..|++..+....            .
T Consensus        20 l~~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~~------------~   87 (148)
T 3lv9_A           20 FEEKKIREIMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRKNKDDILGFVHIRDLYNQKINEN------------K   87 (148)
T ss_dssp             GGTCBGGGTSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESSSTTSEEEEEEHHHHHHHHHHHS------------C
T ss_pred             cCCCCHHHccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhcCC------------C
Confidence            5688999999876678899999999999999999999999999964379999999999987654321            0


Q ss_pred             cchhhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342          232 HTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (426)
Q Consensus       232 ~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~  311 (426)
                      .++..                   .| ++++++.+++++.+|++.|.+++++++||+|   +.|   +++|+||..||++
T Consensus        88 ~~v~~-------------------~m-~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd---~~g---~~~Giit~~dil~  141 (148)
T 3lv9_A           88 IELEE-------------------IL-RDIIYISENLTIDKALERIRKEKLQLAIVVD---EYG---GTSGVVTIEDILE  141 (148)
T ss_dssp             CCGGG-------------------TC-BCCEEEETTSBHHHHHHHHHHHTCSEEEEEC---TTS---SEEEEEEHHHHHH
T ss_pred             ccHHH-------------------hc-CCCeEECCCCCHHHHHHHHHhcCCeEEEEEe---CCC---CEEEEEEHHHHHH
Confidence            01111                   25 6778999999999999999999999999995   345   6999999999999


Q ss_pred             HHHh
Q 014342          312 CICR  315 (426)
Q Consensus       312 ~l~~  315 (426)
                      .+..
T Consensus       142 ~l~~  145 (148)
T 3lv9_A          142 EIVG  145 (148)
T ss_dssp             HHHH
T ss_pred             HHhC
Confidence            8764

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=99.64  E-value=5e-16  Score=131.11  Aligned_cols=126  Identities=16%  Similarity=0.197  Sum_probs=100.5

Q ss_pred             ccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccch
Q 014342          155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTI  234 (426)
Q Consensus       155 ~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i  234 (426)
                      .++.|+|.....+++++++.|+.+|++.|.++++.++||+|.+.++++|+||..|++..+..   . ...     ...++
T Consensus         2 ~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~~~~lvGivt~~dl~~~~~~---~-~~~-----~~~~v   72 (130)
T 3hf7_A            2 VSVNDIMVPRNEIVGIDINDDWKSIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTE---K-KEF-----TKEIM   72 (130)
T ss_dssp             CBHHHHSEEGGGCCEEETTSCHHHHHHHHHTCSSSEEEEESSSGGGEEEEEEHHHHHHHHTS---S-SCC-----CHHHH
T ss_pred             cCHHHhCccHHHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCCcEEEEEEHHHHHHHHhc---c-Ccc-----chhhH
Confidence            46788897666789999999999999999999999999997555799999999998876531   1 001     01111


Q ss_pred             hhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHH
Q 014342          235 SAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCIC  314 (426)
Q Consensus       235 ~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~  314 (426)
                      ..                   .| ++++++.+++++.+|++.|.+++++++||+|   ++|   +++|++|..||++.+.
T Consensus        73 ~~-------------------~m-~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd---~~g---~lvGiit~~Dil~~l~  126 (130)
T 3hf7_A           73 LR-------------------AA-DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVD---EYG---DIQGLVTVEDILEEIV  126 (130)
T ss_dssp             HH-------------------HS-BCCCEEETTCBHHHHHHHHHHHCCCEEEEEC---TTS---CEEEEEEHHHHHHHHH
T ss_pred             HH-------------------hc-cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEc---CCC---CEEEEeeHHHHHHHHh
Confidence            11                   13 4567899999999999999999999999995   345   6999999999999876


Q ss_pred             h
Q 014342          315 R  315 (426)
Q Consensus       315 ~  315 (426)
                      .
T Consensus       127 g  127 (130)
T 3hf7_A          127 G  127 (130)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=99.63  E-value=2.4e-15  Score=132.10  Aligned_cols=117  Identities=20%  Similarity=0.284  Sum_probs=98.7

Q ss_pred             CCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccccccc
Q 014342          259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  338 (426)
Q Consensus       259 ~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~  338 (426)
                      .+++++.+++++.+|++.|.+++++++||+|   ++|   +++|+||..||++++......      ....++.++|.  
T Consensus        35 ~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd---~~~---~~~Givt~~dl~~~~~~~~~~------~~~~~v~~~m~--  100 (165)
T 3fhm_A           35 RDVVTVGPDVSIGEAAGTLHAHKIGAVVVTD---ADG---VVLGIFTERDLVKAVAGQGAA------SLQQSVSVAMT--  100 (165)
T ss_dssp             SCCCEECTTSBHHHHHHHHHHHTCSEEEEEC---TTS---CEEEEEEHHHHHHHHHHHGGG------GGTSBGGGTSB--
T ss_pred             CCCeEECCCCCHHHHHHHHHHcCCCEEEEEc---CCC---eEEEEEEHHHHHHHHHhcCCc------cccCCHHHHhc--
Confidence            3678999999999999999999999999995   235   699999999999988764211      12345555542  


Q ss_pred             cccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHhcc
Q 014342          339 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDK  400 (426)
Q Consensus       339 ~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~~~  400 (426)
                                ++++++.+++++.+|+++|.+++++++||+|+ |+++|+||+.||++.+...
T Consensus       101 ----------~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~~~Giit~~dil~~~~~~  151 (165)
T 3fhm_A          101 ----------KNVVRCQHNSTTDQLMEIMTGGRFRHVPVEEN-GRLAGIISIGDVVKARIGE  151 (165)
T ss_dssp             ----------SSCCCBCTTCBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHTTCC
T ss_pred             ----------CCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHHHHH
Confidence                      47788999999999999999999999999998 9999999999999977654

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=99.63  E-value=1.9e-15  Score=128.99  Aligned_cols=116  Identities=20%  Similarity=0.326  Sum_probs=96.6

Q ss_pred             CCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCC-CCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccc
Q 014342          257 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPA-GSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  335 (426)
Q Consensus       257 ~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~-g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~  335 (426)
                      |.++++++.+++++.+|++.|.+++++++||+|+  +. .   +++|++|..|+++++.....        ...++.++|
T Consensus        11 m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~--~~~~---~~~Givt~~dl~~~~~~~~~--------~~~~v~~~m   77 (141)
T 2rih_A           11 LKRPPVSLPETATIREVATELAKNRVGLAVLTAR--DNPK---RPVAVVSERDILRAVAQRLD--------LDGPAMPIA   77 (141)
T ss_dssp             CCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEET--TEEE---EEEEEEEHHHHHHHHHTTCC--------TTSBSGGGC
T ss_pred             hcCCCeEeCCCCcHHHHHHHHHHcCCCEEEEEcC--CCcc---eeEEEEEHHHHHHHHhcCCC--------CCCCHHHHc
Confidence            5678899999999999999999999999999963  21 1   49999999999998764311        134455544


Q ss_pred             ccccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHh
Q 014342          336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  398 (426)
Q Consensus       336 i~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~  398 (426)
                                  .++++++.++ ++.+|+++|.+++++++||+|++|+++|+||++||++.+.
T Consensus        78 ------------~~~~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~  127 (141)
T 2rih_A           78 ------------NSPITVLDTD-PVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFERA  127 (141)
T ss_dssp             ------------BCCCEEETTS-BHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHSCHH
T ss_pred             ------------CCCCeEEcCC-CHHHHHHHHHHcCCeEEEEEcCCCcEEEEEEHHHHHHHHH
Confidence                        2578899999 9999999999999999999998999999999999986443

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=99.63  E-value=3.9e-15  Score=132.21  Aligned_cols=126  Identities=13%  Similarity=0.124  Sum_probs=105.2

Q ss_pred             hccccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcc
Q 014342          152 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELET  231 (426)
Q Consensus       152 l~~~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~  231 (426)
                      |...++.|+|.....+++++++.|+.+|++.|.++++.++||+|.+.++++|+||..|++..+....            .
T Consensus        33 l~~~~v~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~lvGivt~~Dl~~~~~~~~------------~  100 (173)
T 3ocm_A           33 LAERSIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGSLDEVVGIGRAKDLVADLITEG------------R  100 (173)
T ss_dssp             HTTSCSTTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESSSTTSEEEEEEHHHHHHHHHHHS------------S
T ss_pred             cCCCCHHHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCCCCCEEEEEEHHHHHHHHhcCC------------c
Confidence            5788999999876688999999999999999999999999999865479999999999987654211            0


Q ss_pred             cchhhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342          232 HTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (426)
Q Consensus       232 ~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~  311 (426)
                      .++.                     |.++++++.+++++.+|+..|.+++++.+||+|   +.|   +++||||..||++
T Consensus       101 ~~v~---------------------~~~~~~~v~~~~~l~~al~~m~~~~~~~~~Vvd---e~g---~lvGiIT~~Dil~  153 (173)
T 3ocm_A          101 VRRN---------------------RLRDPIIVHESIGILRLMDTLKRSRGQLVLVAD---EFG---AIEGLVTPIDVFE  153 (173)
T ss_dssp             CCGG---------------------GSBCCCEECGGGCHHHHHHHHHHSTTCCEEEEC---TTC---CEEEEECHHHHHH
T ss_pred             chhH---------------------hcCCCeEECCCCcHHHHHHHHHHcCCeEEEEEe---CCC---CEEEEEeHHHHHH
Confidence            0111                     125678999999999999999999999999995   345   7999999999999


Q ss_pred             HHHhh
Q 014342          312 CICRH  316 (426)
Q Consensus       312 ~l~~~  316 (426)
                      .+...
T Consensus       154 ~l~~~  158 (173)
T 3ocm_A          154 AIAGE  158 (173)
T ss_dssp             HHHCC
T ss_pred             HHhCc
Confidence            98754

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=99.62  E-value=2.3e-15  Score=128.33  Aligned_cols=125  Identities=18%  Similarity=0.165  Sum_probs=97.1

Q ss_pred             CCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccccc
Q 014342          257 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL  336 (426)
Q Consensus       257 ~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i  336 (426)
                      |.++++++.+++++.+|++.|.+++++++||+|+   +|   +++|++|..|+++++.....      .....++.++|.
T Consensus        17 ~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~---~~---~~~Givt~~dl~~~~~~~~~------~~~~~~v~~~m~   84 (144)
T 2nyc_A           17 TQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDE---NG---YLINVYEAYDVLGLIKGGIY------NDLSLSVGEALM   84 (144)
T ss_dssp             BCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECT---TC---BEEEEEEHHHHHHHHHTC----------CCSBHHHHHH
T ss_pred             CCCCceEECCCCcHHHHHHHHHHcCcceeeEEcC---CC---cEEEEEcHHHHHHHhccccc------ccCCccHHHHHh
Confidence            5678889999999999999999999999999952   35   79999999999988754210      112345555442


Q ss_pred             cccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHhc
Q 014342          337 GTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  399 (426)
Q Consensus       337 ~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~~  399 (426)
                      ....      ..++++++.+++++.+|+++|.+++++++||+|++|+++|+||++||++.+..
T Consensus        85 ~~~~------~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~dil~~l~~  141 (144)
T 2nyc_A           85 RRSD------DFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYILL  141 (144)
T ss_dssp             HCC------------CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHH
T ss_pred             cCcc------ccCCCeEECCCCcHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHHHh
Confidence            1100      00157799999999999999999999999999988999999999999987654

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=99.62  E-value=3.5e-15  Score=132.53  Aligned_cols=118  Identities=7%  Similarity=0.062  Sum_probs=98.7

Q ss_pred             CCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccccccc
Q 014342          259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  338 (426)
Q Consensus       259 ~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~  338 (426)
                      .+++++.+++++.+|++.|.+++++++||+++  ..+   +++|+||.+||++++....          ..++. +    
T Consensus        46 ~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~--~~~---~lvGivt~~Dl~~~~~~~~----------~~~v~-~----  105 (173)
T 3ocm_A           46 TDVSWVNIDDDAATIRQQLTAAPHSFFPVCRG--SLD---EVVGIGRAKDLVADLITEG----------RVRRN-R----  105 (173)
T ss_dssp             GGCCCEETTSCHHHHHHHHHHSSCSEEEEESS--STT---SEEEEEEHHHHHHHHHHHS----------SCCGG-G----
T ss_pred             HHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeC--CCC---CEEEEEEHHHHHHHHhcCC----------cchhH-h----
Confidence            45788999999999999999999999999952  225   6999999999999876431          12233 1    


Q ss_pred             cccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHhccccccC
Q 014342          339 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQI  405 (426)
Q Consensus       339 ~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~~~~~~~l  405 (426)
                       +        ++++++.+++++.+|+++|.+++++.+||+|++|+++|+||+.||+..+....+...
T Consensus       106 -~--------~~~~~v~~~~~l~~al~~m~~~~~~~~~Vvde~g~lvGiIT~~Dil~~l~~~i~de~  163 (173)
T 3ocm_A          106 -L--------RDPIIVHESIGILRLMDTLKRSRGQLVLVADEFGAIEGLVTPIDVFEAIAGEFPDED  163 (173)
T ss_dssp             -S--------BCCCEECGGGCHHHHHHHHHHSTTCCEEEECTTCCEEEEECHHHHHHHHHCCCCCTT
T ss_pred             -c--------CCCeEECCCCcHHHHHHHHHHcCCeEEEEEeCCCCEEEEEeHHHHHHHHhCcCCCcc
Confidence             1        377899999999999999999999999999999999999999999998877655443

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=99.62  E-value=2.6e-15  Score=129.35  Aligned_cols=121  Identities=17%  Similarity=0.231  Sum_probs=96.7

Q ss_pred             CCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccccccc
Q 014342          259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  338 (426)
Q Consensus       259 ~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~  338 (426)
                      .+++++.+++++.+|++.|.+++++++||+|   ++|   +++|+||..||++++.......  .......++.++|   
T Consensus        25 ~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd---~~~---~~~Givt~~dl~~~~~~~~~~~--~~~~~~~~v~~~m---   93 (150)
T 3lqn_A           25 EKVAHVQIGNGLEHALLVLVKSGYSAIPVLD---PMY---KLHGLISTAMILDGILGLERIE--FERLEEMKVEQVM---   93 (150)
T ss_dssp             GGSCCBCTTSBHHHHHHHHHHHTCSEEEEEC---TTC---BEEEEEEHHHHHHHTBCSSSBC--GGGGGGCBGGGTC---
T ss_pred             CceEEECCCCcHHHHHHHHHHcCCcEEEEEC---CCC---CEEEEEEHHHHHHHHHhhcccc--hhHHhcCCHHHHh---
Confidence            4578999999999999999999999999995   245   7999999999998865321100  0011234444443   


Q ss_pred             cccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHhccc
Q 014342          339 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKA  401 (426)
Q Consensus       339 ~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~~~~  401 (426)
                               .++++++.+++++.+|+++|.++++  +||||++|+++|+||++||++.+.+..
T Consensus        94 ---------~~~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd~~g~~~Giit~~dil~~l~~~~  145 (150)
T 3lqn_A           94 ---------KQDIPVLKLEDSFAKALEMTIDHPF--ICAVNEDGYFEGILTRRAILKLLNKKV  145 (150)
T ss_dssp             ---------BSSCCEEETTCBHHHHHHHHHHCSE--EEEECTTCBEEEEEEHHHHHHHHHHHC
T ss_pred             ---------cCCCceeCCCCCHHHHHHHHHhCCE--EEEECCCCcEEEEEEHHHHHHHHHHHh
Confidence                     2577899999999999999999997  999999999999999999999877643

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.62  E-value=2.3e-15  Score=138.19  Aligned_cols=163  Identities=12%  Similarity=0.194  Sum_probs=97.1

Q ss_pred             cccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccc
Q 014342          154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHT  233 (426)
Q Consensus       154 ~~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~  233 (426)
                      .-+|.+.|..  .+++++++.|+.+|+++|.+++++++||+|+ +++++|+||..|+...+.               ..+
T Consensus        12 ~~~~~~~~~~--~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~-~~~l~Givt~~dl~~~~~---------------~~~   73 (213)
T 1vr9_A           12 HMKVKKWVTQ--DFPMVEESATVRECLHRMRQYQTNECIVKDR-EGHFRGVVNKEDLLDLDL---------------DSS   73 (213)
T ss_dssp             -CBGGGGCBS--CSCEEETTCBHHHHHHHHHHTTSSEEEEECT-TSBEEEEEEGGGGTTSCT---------------TSB
T ss_pred             ccCHHHhhcC--CCeEECCCCcHHHHHHHHHHCCCCEEEEEcC-CCEEEEEEEHHHHHhhcC---------------CCc
Confidence            4567788866  5678899999999999999999999999985 479999999999753210               001


Q ss_pred             hhhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHH
Q 014342          234 ISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCI  313 (426)
Q Consensus       234 i~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l  313 (426)
                      ++.                   .|.++++++.+++++.+|+++|.+++++++||+|   ++|   +++|+||.+|+++.+
T Consensus        74 v~~-------------------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd---~~g---~lvGiit~~Dil~~~  128 (213)
T 1vr9_A           74 VFN-------------------KVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVD---EEM---RLKGAVSLHDFLEAL  128 (213)
T ss_dssp             SGG-------------------GCBCTTCCEETTSBHHHHHHHHHHCCCSEEEEEC---TTC---BEEEEEEHHHHHHHH
T ss_pred             HHH-------------------HccCCCEEECCCCcHHHHHHHHHHhCCCEEEEEc---CCC---EEEEEEEHHHHHHHH
Confidence            111                   2466788999999999999999999999999995   235   799999999999987


Q ss_pred             HhhccccCCCccccccccccccccccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCC
Q 014342          314 CRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDND  382 (426)
Q Consensus       314 ~~~~~~~~~~~~~~~~~v~~l~i~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g  382 (426)
                      ......            .+.+  +..         .+.+.....++.+|.++|.+++++.+||++.+|
T Consensus       129 ~~~~~~------------~~~~--~~l---------~~~~~~~~~~l~~~~~~l~~~~~~~l~V~~~~~  174 (213)
T 1vr9_A          129 IEALAM------------DVPG--IRF---------SVLLEDKPGELRKVVDALALSNINILSVITTRS  174 (213)
T ss_dssp             HHSCC----------------------------------------------------------------
T ss_pred             HHHhcC------------CCCc--EEE---------EEEeCCCCccHHHHHHHHHHCCCcEEEEEEEec
Confidence            643210            0000  100         111113334599999999999999999987544

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=99.62  E-value=2.4e-15  Score=131.25  Aligned_cols=119  Identities=14%  Similarity=0.237  Sum_probs=97.7

Q ss_pred             CCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccccc
Q 014342          257 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL  336 (426)
Q Consensus       257 ~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i  336 (426)
                      |.++ +++.+++++.+|++.|.+++++++||+|   ++|   +++|+||..||++++....       .....++.++|.
T Consensus        23 m~~~-~~v~~~~~~~~a~~~m~~~~~~~~~Vvd---~~~---~~~Givt~~dl~~~~~~~~-------~~~~~~v~~~m~   88 (159)
T 3fv6_A           23 QSIP-VVIHENVSVYDAICTMFLEDVGTLFVVD---RDA---VLVGVLSRKDLLRASIGQQ-------ELTSVPVHIIMT   88 (159)
T ss_dssp             CBCC-CEEETTSBHHHHHHHHHHHTCSEEEEEC---TTS---CEEEEEEHHHHHHHHTSCS-------CTTTCBGGGTSE
T ss_pred             cCCC-EEECCCCcHHHHHHHHHHCCCCEEEEEc---CCC---cEEEEEeHHHHHHHhhccC-------cccCcCHHHHHc
Confidence            4554 5899999999999999999999999995   235   6999999999999774321       122445665552


Q ss_pred             cccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCC---cEEEEEeHHHHHHHHhc
Q 014342          337 GTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDND---SLLDIYSRSDITALAKD  399 (426)
Q Consensus       337 ~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g---~lvGiis~~DI~~~~~~  399 (426)
                      ..          .+++++.+++++.+|+++|.+++++++||+|++|   +++|+||+.||++.+.+
T Consensus        89 ~~----------~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~~~vGiit~~dil~~l~~  144 (159)
T 3fv6_A           89 RM----------PNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKTNMTKILVS  144 (159)
T ss_dssp             ET----------TSCCCBCTTSBHHHHHHHHHHHTCSEEEEEEECSSSEEEEEEEEHHHHHHHHHH
T ss_pred             CC----------CCcEEECCCCCHHHHHHHHHHcCCcEEEEEeCCCcceeEEEEEEHHHHHHHHHH
Confidence            10          1677899999999999999999999999999888   99999999999997765

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=99.61  E-value=3.3e-15  Score=132.32  Aligned_cols=128  Identities=15%  Similarity=0.160  Sum_probs=102.9

Q ss_pred             HhccccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhc
Q 014342          151 FLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELE  230 (426)
Q Consensus       151 ~l~~~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~  230 (426)
                      .|...++.|+|....++++++++.|+.+|+++|.++++.++||+|.+.++++|+||..|++..+....            
T Consensus        38 ~l~~~~v~diM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~~------------  105 (172)
T 3lhh_A           38 RLDERTISSLMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRNNVDDMVGIISAKQLLSESIAGE------------  105 (172)
T ss_dssp             -----CTTTTSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESSSTTSEEEEEEHHHHHHHHHTTC------------
T ss_pred             ccCCCCHHHhCccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEEHHHHHHHHhhcC------------
Confidence            36678999999866688999999999999999999999999999864379999999999987654210            


Q ss_pred             ccchhhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHH
Q 014342          231 THTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDIL  310 (426)
Q Consensus       231 ~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil  310 (426)
                      ..++..                   .| ++++++.+++++.+|+..|.+++++++||+|   +.|   +++|+||..||+
T Consensus       106 ~~~v~~-------------------im-~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd---~~g---~lvGiit~~Dil  159 (172)
T 3lhh_A          106 RLELVD-------------------LV-KNCNFVPNSLSGMELLEHFRTTGSQMVFVVD---EYG---DLKGLVTLQDMM  159 (172)
T ss_dssp             CCCGGG-------------------GC-BCCEEEETTCCHHHHHHHHHHHTCSEEEEEC---TTS---CEEEEEEHHHHH
T ss_pred             cccHHH-------------------Hh-cCCeEeCCCCCHHHHHHHHHHcCCeEEEEEe---CCC---CEEEEeeHHHHH
Confidence            011111                   25 6788999999999999999999999999995   335   699999999999


Q ss_pred             HHHHhh
Q 014342          311 KCICRH  316 (426)
Q Consensus       311 ~~l~~~  316 (426)
                      +.+...
T Consensus       160 ~~l~~~  165 (172)
T 3lhh_A          160 DALTGE  165 (172)
T ss_dssp             HHHHTT
T ss_pred             HHHhCC
Confidence            998754

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=99.61  E-value=3.4e-15  Score=130.48  Aligned_cols=124  Identities=18%  Similarity=0.278  Sum_probs=98.3

Q ss_pred             CCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCC-Ccccccccccccc
Q 014342          257 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSS-SLPILQQPVSSIQ  335 (426)
Q Consensus       257 ~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~-~~~~~~~~v~~l~  335 (426)
                      |.++++++.+++++.+|+..|.+++++++||+|   ++|   +++|+||..||++++......... .......++.++|
T Consensus        11 m~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd---~~~---~lvGivt~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im   84 (160)
T 2o16_A           11 MTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVD---ANK---KLLGIVSQRDLLAAQESSLQRSAQGDSLAFETPLFEVM   84 (160)
T ss_dssp             SEESCCCBCTTSBHHHHHHHHHHHTCSEEEEEC---TTC---BEEEEEEHHHHHHHHHHHCC---------CCCBHHHHS
T ss_pred             hcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEc---CCC---cEEEEEeHHHHHHHHHHhhcccccccchhcccCHHHHh
Confidence            566788999999999999999999999999995   235   799999999999987653221100 0011233444443


Q ss_pred             ccccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHhc
Q 014342          336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  399 (426)
Q Consensus       336 i~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~~  399 (426)
                                  .++++++.+++++.+|+++|.+++++++||+|+ |+++|+||++||++.+..
T Consensus        85 ------------~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~lvGiit~~dil~~~~~  135 (160)
T 2o16_A           85 ------------HTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAK-DVLVGIITDSDFVTIAIN  135 (160)
T ss_dssp             ------------CSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEET-TEEEEEECHHHHHHHHHH
T ss_pred             ------------cCCCeEECCCCCHHHHHHHHHHhCCCEEEEEEC-CEEEEEEEHHHHHHHHHH
Confidence                        357889999999999999999999999999998 999999999999987654

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=99.61  E-value=2.5e-15  Score=127.37  Aligned_cols=117  Identities=20%  Similarity=0.383  Sum_probs=96.5

Q ss_pred             CCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhH-HHHHHhhccccCCCcccccccccccc
Q 014342          257 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDI-LKCICRHFKHSSSSLPILQQPVSSIQ  335 (426)
Q Consensus       257 ~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~di-l~~l~~~~~~~~~~~~~~~~~v~~l~  335 (426)
                      |.++++++.+++++.+|++.|.+++.+++||+|+   +|   +++|++|..|+ ++++....        ....++.++|
T Consensus        14 m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~---~~---~~~Givt~~dl~~~~~~~~~--------~~~~~v~~~m   79 (138)
T 2p9m_A           14 MTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDD---EN---KVIGIVTTTDIGYNLIRDKY--------TLETTIGDVM   79 (138)
T ss_dssp             SBCSCCCEETTSBHHHHHHHHHHHTCCEEEEECT---TC---BEEEEEEHHHHHHHHTTTCC--------CSSCBHHHHS
T ss_pred             hcCCceEECCCCcHHHHHHHHHHCCCcEEEEECC---CC---eEEEEEEHHHHHHHHHhhcc--------cCCcCHHHHh
Confidence            5677888999999999999999999999999952   35   79999999999 87654221        1234455544


Q ss_pred             ccccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcC-----CcEeeEEcCCCcEEEEEeHHHHHHHHhc
Q 014342          336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQAD-----VSSIPIVDDNDSLLDIYSRSDITALAKD  399 (426)
Q Consensus       336 i~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~-----i~~lPVVd~~g~lvGiis~~DI~~~~~~  399 (426)
                      .            +++.++.+++++.+|+++|.+++     ++++||+|++|+++|+||++||++.+.+
T Consensus        80 ~------------~~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~~  136 (138)
T 2p9m_A           80 T------------KDVITIHEDASILEAIKKMDISGKKEEIINQLPVVDKNNKLVGIISDGDIIRTISK  136 (138)
T ss_dssp             C------------SSCCCEETTSBHHHHHHHHTCC-----CCCEEEEECTTSBEEEEEEHHHHHHHHHH
T ss_pred             C------------CCcEEECCCCCHHHHHHHHHhcCCccccccEEEEECCCCeEEEEEEHHHHHHHHHh
Confidence            2            46778999999999999999999     9999999988999999999999987654

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=99.61  E-value=5.2e-15  Score=125.54  Aligned_cols=120  Identities=18%  Similarity=0.330  Sum_probs=97.9

Q ss_pred             CCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccccc
Q 014342          257 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL  336 (426)
Q Consensus       257 ~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i  336 (426)
                      |.++++++.+++++.+|++.|.+++++++||+|+   +|   +++|++|..|+++.+....       .....++.++| 
T Consensus        13 m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~---~~---~~~Givt~~dl~~~~~~~~-------~~~~~~v~~~m-   78 (138)
T 2yzi_A           13 MTKKLLGVKPSTSVQEASRLMMEFDVGSLVVIND---DG---NVVGFFTKSDIIRRVIVPG-------LPYDIPVERIM-   78 (138)
T ss_dssp             CBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECT---TS---CEEEEEEHHHHHHHTTTTC-------CCTTSBGGGTC-
T ss_pred             hcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC---CC---cEEEEEeHHHHHHHHHhcC-------CcccCCHHHHh-
Confidence            5678899999999999999999999999999952   35   7999999999985332110       01234444444 


Q ss_pred             cccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHhcccc
Q 014342          337 GTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAY  402 (426)
Q Consensus       337 ~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~~~~~  402 (426)
                                 .+++.++.+++++.+|+++|.+++++++ |+|++|+++|+||+.||++.+.....
T Consensus        79 -----------~~~~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd~~g~~~Giit~~dil~~~~~~~~  132 (138)
T 2yzi_A           79 -----------TRNLITANVNTPLGEVLRKMAEHRIKHI-LIEEEGKIVGIFTLSDLLEASRRRLE  132 (138)
T ss_dssp             -----------BCSCCEEETTSBHHHHHHHHHHHTCSEE-EEEETTEEEEEEEHHHHHHHHHCCSC
T ss_pred             -----------hCCCeEECCCCcHHHHHHHHHhcCCCEE-EECCCCCEEEEEEHHHHHHHHHHHHH
Confidence                       2477899999999999999999999999 99988999999999999998876543

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.60  E-value=6.1e-15  Score=128.30  Aligned_cols=125  Identities=16%  Similarity=0.232  Sum_probs=98.0

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhCCCCe-eEEEecCCCCCCcceEEEEecHHhHHHHHHhhc----cccC---C-Cccc
Q 014342          256 PCPRPLVQAGPYDSLKEVALKILQNKVAT-VPIIHSTGPAGSCQEILYLASLSDILKCICRHF----KHSS---S-SLPI  326 (426)
Q Consensus       256 ~~~~~~v~v~~~~sl~~a~~~m~~~~v~~-lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~----~~~~---~-~~~~  326 (426)
                      .|.++++++.+++++.+|++.|.++++++ +||+|+    +   +++|+||..||++++...+    ....   . ....
T Consensus        21 im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~----~---~~vGivt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~   93 (157)
T 1o50_A           21 LISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARD----N---KLVGMIPVMHLLKVSGFHFFGFIPKEELIRSSMKRL   93 (157)
T ss_dssp             SSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEET----T---EEEEEEEHHHHHHHHHHHHHCCCC-------CCCCC
T ss_pred             cccCCCceECCCCCHHHHHHHHHhCCCCccEEEEEC----C---EEEEEEEHHHHHHHHhhhHHhhhccHHHHHHHHHHH
Confidence            36788999999999999999999999999 999962    2   4999999999998765210    0000   0 0011


Q ss_pred             cccccccccccccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHhcc
Q 014342          327 LQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDK  400 (426)
Q Consensus       327 ~~~~v~~l~i~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~~~  400 (426)
                      ...++.++|            .+ ++++.+++++.+|+++|.+++++++||+|++|+++|+||+.||++.+.+.
T Consensus        94 ~~~~v~~im------------~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dll~~l~~~  154 (157)
T 1o50_A           94 IAKNASEIM------------LD-PVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLALWKG  154 (157)
T ss_dssp             SSCBHHHHC------------BC-CCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHS
T ss_pred             cCCcHHHHc------------CC-CeEECCCCCHHHHHHHHHHCCCcEEEEEcCCCEEEEEEEHHHHHHHHHHh
Confidence            223344333            24 77899999999999999999999999999889999999999999977653

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=99.60  E-value=9e-16  Score=128.74  Aligned_cols=124  Identities=17%  Similarity=0.278  Sum_probs=97.6

Q ss_pred             cccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccc
Q 014342          154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHT  233 (426)
Q Consensus       154 ~~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~  233 (426)
                      +.++.|+|.....+++++++.|+.+|+++|.++++.++||+|++.++++|+||..|++..+..   ..        ...+
T Consensus         2 ~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~---~~--------~~~~   70 (127)
T 3nqr_A            2 DQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRS---DA--------EAFS   70 (127)
T ss_dssp             -CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGST---TC--------CCCC
T ss_pred             CcCHHHhcccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhc---cC--------CCCC
Confidence            457788887655788999999999999999999999999999654799999999998754321   00        0111


Q ss_pred             hhhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHH
Q 014342          234 ISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCI  313 (426)
Q Consensus       234 i~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l  313 (426)
                      ++.+                   |. +++++.+++++.+|++.|.+++++++||+|   ++|   +++|+||..||++.+
T Consensus        71 v~~~-------------------m~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd---~~g---~~~Giit~~dll~~l  124 (127)
T 3nqr_A           71 MDKV-------------------LR-TAVVVPESKRVDRMLKEFRSQRYHMAIVID---EFG---GVSGLVTIEDILELI  124 (127)
T ss_dssp             HHHH-------------------CB-CCCEEETTCBHHHHHHHHHHTTCCEEEEEC---TTS---CEEEEEEHHHHHHHC
T ss_pred             HHHH-------------------cC-CCeEECCCCcHHHHHHHHHhcCCeEEEEEe---CCC---CEEEEEEHHHHHHHH
Confidence            2221                   33 357899999999999999999999999995   345   799999999999875


Q ss_pred             H
Q 014342          314 C  314 (426)
Q Consensus       314 ~  314 (426)
                      .
T Consensus       125 ~  125 (127)
T 3nqr_A          125 V  125 (127)
T ss_dssp             -
T ss_pred             h
Confidence            4

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=99.60  E-value=7.4e-15  Score=128.13  Aligned_cols=140  Identities=16%  Similarity=0.228  Sum_probs=109.2

Q ss_pred             HHHHHHHhccccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCC
Q 014342          145 RDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNL  224 (426)
Q Consensus       145 ~~~~~~~l~~~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~  224 (426)
                      +..+.+.|...++.|+|..   .+++.++.++.+|+++|.++++..+||+|+ +++++|+||..|++..+..   ..   
T Consensus         7 ~~~l~~~l~~~~v~~im~~---~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~-~~~~~Givt~~dl~~~~~~---~~---   76 (159)
T 3fv6_A            7 TQLLADKLKKLQVKDFQSI---PVVIHENVSVYDAICTMFLEDVGTLFVVDR-DAVLVGVLSRKDLLRASIG---QQ---   76 (159)
T ss_dssp             CHHHHHHHTTCBGGGSCBC---CCEEETTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHTS---CS---
T ss_pred             HHHHHHHHhhCCHHHHcCC---CEEECCCCcHHHHHHHHHHCCCCEEEEEcC-CCcEEEEEeHHHHHHHhhc---cC---
Confidence            3467889999999999974   358999999999999999999999999995 4799999999998876521   10   


Q ss_pred             ChhhhcccchhhhHHHHHhhccccccCCCCCCCCC--CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEE
Q 014342          225 TEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILY  302 (426)
Q Consensus       225 ~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~--~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvG  302 (426)
                         .....++..                   .|.+  +++++.+++++.+|++.|.+++++++||+|++.+..   +++|
T Consensus        77 ---~~~~~~v~~-------------------~m~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~---~~vG  131 (159)
T 3fv6_A           77 ---ELTSVPVHI-------------------IMTRMPNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGF---EVIG  131 (159)
T ss_dssp             ---CTTTCBGGG-------------------TSEETTSCCCBCTTSBHHHHHHHHHHHTCSEEEEEEECSSSE---EEEE
T ss_pred             ---cccCcCHHH-------------------HHcCCCCcEEECCCCCHHHHHHHHHHcCCcEEEEEeCCCcce---eEEE
Confidence               001111222                   1344  778899999999999999999999999997421111   4999


Q ss_pred             EecHHhHHHHHHhhccc
Q 014342          303 LASLSDILKCICRHFKH  319 (426)
Q Consensus       303 iit~~dil~~l~~~~~~  319 (426)
                      +||..||++++.+....
T Consensus       132 iit~~dil~~l~~~~~~  148 (159)
T 3fv6_A          132 RVTKTNMTKILVSLSEN  148 (159)
T ss_dssp             EEEHHHHHHHHHHHHTT
T ss_pred             EEEHHHHHHHHHHHhhc
Confidence            99999999998876443

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=99.60  E-value=5.6e-15  Score=124.92  Aligned_cols=116  Identities=18%  Similarity=0.303  Sum_probs=95.4

Q ss_pred             CCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccccccc
Q 014342          259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  338 (426)
Q Consensus       259 ~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~  338 (426)
                      ++++++.+++++.+|++.|.+++++++||++    +|   +++|++|..|+++.+.....      .....++.++|.  
T Consensus        17 ~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd----~~---~~~Givt~~dl~~~~~~~~~------~~~~~~v~~~m~--   81 (135)
T 2rc3_A           17 HTVVAIGPDDSVFNAMQKMAADNIGALLVMK----DE---KLVGILTERDFSRKSYLLDK------PVKDTQVKEIMT--   81 (135)
T ss_dssp             CCCCEECTTSBHHHHHHHHHHHTCSEEEEEE----TT---EEEEEEEHHHHHHHGGGSSS------CGGGSBGGGTSB--
T ss_pred             CCcEEECCCCcHHHHHHHHHhcCCCEEEEEE----CC---EEEEEEehHHHHHHHHHcCC------CcccCCHHHhcc--
Confidence            6788999999999999999999999999994    35   79999999999875432210      112344555442  


Q ss_pred             cccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHhcc
Q 014342          339 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDK  400 (426)
Q Consensus       339 ~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~~~  400 (426)
                                +++.++.+++++.+|+++|.+++++++||+| +|+++|+||++||++.+.+.
T Consensus        82 ----------~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~~~Giit~~dll~~~~~~  132 (135)
T 2rc3_A           82 ----------RQVAYVDLNNTNEDCMALITEMRVRHLPVLD-DGKVIGLLSIGDLVKDAISQ  132 (135)
T ss_dssp             ----------CSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHC-
T ss_pred             ----------CCCeEECCCCcHHHHHHHHHHhCCCEEEEEe-CCEEEEEEEHHHHHHHHHhc
Confidence                      4778899999999999999999999999999 79999999999999877643

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=99.60  E-value=5.4e-15  Score=128.48  Aligned_cols=130  Identities=13%  Similarity=0.221  Sum_probs=100.1

Q ss_pred             CCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccccccc
Q 014342          259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  338 (426)
Q Consensus       259 ~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~  338 (426)
                      ++++++.+++++.+|++.|.+++++++||.+    +|   +++|++|..|+++++......      ....++.++|.  
T Consensus        21 ~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~~----~~---~~~Givt~~dl~~~~~~~~~~------~~~~~v~~~m~--   85 (157)
T 4fry_A           21 RTIYTVTKNDFVYDAIKLMAEKGIGALLVVD----GD---DIAGIVTERDYARKVVLQERS------SKATRVEEIMT--   85 (157)
T ss_dssp             CCCCEEETTSBHHHHHHHHHHHTCSEEEEES----SS---SEEEEEEHHHHHHHSGGGTCC------SSSCBHHHHSB--
T ss_pred             CCCeEECCCCcHHHHHHHHHHcCCCEEEEee----CC---EEEEEEEHHHHHHHHHhccCC------ccccCHHHHcC--
Confidence            5678999999999999999999999999962    35   699999999999987644221      12445555542  


Q ss_pred             cccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHhccccccCCCCCccHHHHHHH
Q 014342          339 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQIHLDEMNIHQVIAR  418 (426)
Q Consensus       339 ~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~~~~~~~l~~~~~~v~~~l~~  418 (426)
                                ++++++.+++++.+|+++|.+++++++||+| +|+++|+||++||++.+........    ..+.+++..
T Consensus        86 ----------~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~~~Giit~~dil~~l~~~~~~~~----~~~~~~i~~  150 (157)
T 4fry_A           86 ----------AKVRYVEPSQSTDECMALMTEHRMRHLPVLD-GGKLIGLISIGDLVKSVIADQQFTI----SQLEHYIHG  150 (157)
T ss_dssp             ----------SSCCCBCTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHTTCCCCC----C--------
T ss_pred             ----------CCCcEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHHHHHhhH----HHHHhhccC
Confidence                      4677899999999999999999999999999 7999999999999998877654333    344555543

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=99.59  E-value=4.1e-15  Score=128.24  Aligned_cols=113  Identities=15%  Similarity=0.239  Sum_probs=95.1

Q ss_pred             CCC--CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccc
Q 014342          257 CPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSI  334 (426)
Q Consensus       257 ~~~--~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l  334 (426)
                      |.+  +++++.+++++.+|++.|.+++++++||+|   ++|   +++|+||..||++++....       .....++.++
T Consensus        34 m~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd---~~~---~~~Givt~~dl~~~~~~~~-------~~~~~~v~~~  100 (149)
T 3k2v_A           34 MHTGDEIPHVGLQATLRDALLEITRKNLGMTAICD---DDM---NIIGIFTDGDLRRVFDTGV-------DMRDASIADV  100 (149)
T ss_dssp             SBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEEC---TTC---BEEEEEEHHHHHHHHCSSS-------CCTTCBHHHH
T ss_pred             hcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEEC---CCC---cEEEEecHHHHHHHHhcCC-------CcccCcHHHH
Confidence            566  788999999999999999999999999995   235   7999999999998875431       1234555555


Q ss_pred             cccccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHH
Q 014342          335 QLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITA  395 (426)
Q Consensus       335 ~i~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~  395 (426)
                      |.            ++++++.+++++.+|+++|.+++++.+||+|++ +++|+||+.||++
T Consensus       101 m~------------~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-~~~Giit~~dil~  148 (149)
T 3k2v_A          101 MT------------RGGIRIRPGTLAVDALNLMQSRHITCVLVADGD-HLLGVVHMHDLLR  148 (149)
T ss_dssp             SE------------ESCCEECTTCBHHHHHHHHHHHTCSEEEEEETT-EEEEEEEHHHHTC
T ss_pred             cC------------CCCeEECCCCCHHHHHHHHHHcCCCEEEEecCC-EEEEEEEHHHhhc
Confidence            42            367789999999999999999999999999975 9999999999864

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=99.59  E-value=3.4e-15  Score=129.41  Aligned_cols=127  Identities=16%  Similarity=0.227  Sum_probs=104.5

Q ss_pred             hccccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeee-eCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhc
Q 014342          152 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLW-DDFKGRFVGVLSALDFILILRELGTNGSNLTEEELE  230 (426)
Q Consensus       152 l~~~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~-D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~  230 (426)
                      |...++.|+|.....+++++++.|+.+|+++|.++++.++||+ |.+.++++|+||..|++..+....            
T Consensus        17 l~~~~v~~iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~~~~lvGivt~~dl~~~~~~~~------------   84 (153)
T 3oco_A           17 MNDKVASDVMVDRTSMSVVDVDETIADALLLYLEEQYSRFPVTADNDKDKIIGYAYNYDIVRQARIDD------------   84 (153)
T ss_dssp             HHHCBHHHHSEEGGGCCCEETTSBHHHHHHHHHHHCCSEEEEEETTEEEEEEEEEEHHHHHHHHHHHT------------
T ss_pred             cCCCEeeeEecchhheEEEcCCCCHHHHHHHHHhCCCCEEEEEECCCCCcEEEEEEHHHHHhHHhcCC------------
Confidence            5678899999765578899999999999999999999999999 544479999999999987654221            


Q ss_pred             ccchhhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHH
Q 014342          231 THTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDIL  310 (426)
Q Consensus       231 ~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil  310 (426)
                      ..++..                   .| ++++++.+++++.+|+..|.+++++++||+|   +.|   +++|+||..||+
T Consensus        85 ~~~v~~-------------------~m-~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd---~~g---~~vGivt~~dil  138 (153)
T 3oco_A           85 KAKIST-------------------IM-RDIVSVPENMKVPDVMEEMSAHRVPMAIVID---EYG---GTSGIITDKDVY  138 (153)
T ss_dssp             TSBGGG-------------------TC-BCCEEEETTSBHHHHHHHHHHTTCSCEEEEC---TTS---CEEEEECHHHHH
T ss_pred             CCcHHH-------------------Hh-CCCeEECCCCCHHHHHHHHHHcCCcEEEEEe---CCC---CEEEEeeHHHHH
Confidence            011111                   25 6789999999999999999999999999995   345   799999999999


Q ss_pred             HHHHhh
Q 014342          311 KCICRH  316 (426)
Q Consensus       311 ~~l~~~  316 (426)
                      +.+...
T Consensus       139 ~~l~~~  144 (153)
T 3oco_A          139 EELFGN  144 (153)
T ss_dssp             HHHHC-
T ss_pred             HHHhcc
Confidence            988754

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=99.58  E-value=3.7e-15  Score=128.16  Aligned_cols=122  Identities=17%  Similarity=0.240  Sum_probs=93.8

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhcccc------CCCcccccccccc
Q 014342          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHS------SSSLPILQQPVSS  333 (426)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~------~~~~~~~~~~v~~  333 (426)
                      +++++.+++++.+|++.|.+++++++||+|   +++   +++|++|..|+++++.......      .........++.+
T Consensus        16 ~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd---~~~---~~~G~vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~   89 (152)
T 4gqw_A           16 DLHVVKPTTTVDEALELLVENRITGFPVID---EDW---KLVGLVSDYDLLALDSGDSTWKTFNAVQKLLSKTNGKLVGD   89 (152)
T ss_dssp             TCCCBCTTSBHHHHHHHHHHTTCSEEEEEC---TTC---BEEEEEEHHHHTTCC----CCHHHHHHHTC-----CCBHHH
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCceEEEEe---CCC---eEEEEEEHHHHHHhhcccCcccchHHHHHHHHHhccccHHH
Confidence            688999999999999999999999999995   235   7999999999986532110000      0000111234444


Q ss_pred             ccccccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHhc
Q 014342          334 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  399 (426)
Q Consensus       334 l~i~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~~  399 (426)
                      +|            .++++++.+++++.+|+++|.+++++++||+|++|+++|+||++||++.+.+
T Consensus        90 ~m------------~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Giit~~dil~~~~~  143 (152)
T 4gqw_A           90 LM------------TPAPLVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLVGIITRGNVVRAALQ  143 (152)
T ss_dssp             HS------------EESCCCEESSSBHHHHHHHHHHSSCCEEEEECTTSBEEEEEEHHHHHHHHHC
T ss_pred             hc------------CCCceEECCCCcHHHHHHHHHHCCCCEEEEECCCCcEEEEEEHHHHHHHHHh
Confidence            43            2466789999999999999999999999999999999999999999997765

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=99.58  E-value=1.8e-15  Score=131.79  Aligned_cols=110  Identities=18%  Similarity=0.224  Sum_probs=91.9

Q ss_pred             CCC--CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccc
Q 014342          257 CPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSI  334 (426)
Q Consensus       257 ~~~--~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l  334 (426)
                      |++  +++++.+++++.+|++.|.+++++++||+++  +.+   +++|+||..|+++++...          ...++.++
T Consensus        44 M~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~--~~~---~lvGivt~~dl~~~~~~~----------~~~~v~~i  108 (156)
T 3oi8_A           44 MITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGE--DKD---EVLGILHAKDLLKYMFNP----------EQFHLKSI  108 (156)
T ss_dssp             CEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESS--STT---CEEEEEEGGGGGGGSSCG----------GGCCHHHH
T ss_pred             eeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcC--CCC---cEEEEEEHHHHHHHHHcC----------CcccHHHH
Confidence            454  6889999999999999999999999999953  334   699999999998764321          13344444


Q ss_pred             cccccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHH
Q 014342          335 QLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDIT  394 (426)
Q Consensus       335 ~i~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~  394 (426)
                      |             ++++++.+++++.+|+++|.+++++.+||+|++|+++|+||+.||+
T Consensus       109 m-------------~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~g~~~Givt~~Dil  155 (156)
T 3oi8_A          109 L-------------RPAVFVPEGKSLTALLKEFREQRNHMAIVIDEYGGTSGLVTFEDII  155 (156)
T ss_dssp             C-------------BCCCEEETTSBHHHHHHHHHHTTCCEEEEECTTSSEEEEEEHHHHC
T ss_pred             c-------------CCCEEECCCCCHHHHHHHHHhcCCeEEEEECCCCCEEEEEEHHHhc
Confidence            4             2567899999999999999999999999999999999999999985

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=99.58  E-value=6.9e-15  Score=126.70  Aligned_cols=137  Identities=17%  Similarity=0.208  Sum_probs=106.2

Q ss_pred             HHhccccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhh
Q 014342          150 SFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEEL  229 (426)
Q Consensus       150 ~~l~~~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l  229 (426)
                      ..|...++.|+|.....++++.++.|+.+|++.|.++++.++||+|+ +++++|+||..|++..+....    ....+..
T Consensus        10 ~~l~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~-~~~~~Givt~~dl~~~~~~~~----~~~~~~~   84 (150)
T 3lqn_A           10 DEFQQIFVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDP-MYKLHGLISTAMILDGILGLE----RIEFERL   84 (150)
T ss_dssp             HHHHHCBHHHHSEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEEHHHHHHHTBCSS----SBCGGGG
T ss_pred             HhhhcCChhhcccCCCceEEECCCCcHHHHHHHHHHcCCcEEEEECC-CCCEEEEEEHHHHHHHHHhhc----ccchhHH
Confidence            45677899999987667899999999999999999999999999995 479999999999876553110    0111111


Q ss_pred             cccchhhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhH
Q 014342          230 ETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDI  309 (426)
Q Consensus       230 ~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~di  309 (426)
                      ...++..                   .|.++++++.+++++.+|++.|.++++  +||+|   ++|   +++|+||..||
T Consensus        85 ~~~~v~~-------------------~m~~~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd---~~g---~~~Giit~~di  137 (150)
T 3lqn_A           85 EEMKVEQ-------------------VMKQDIPVLKLEDSFAKALEMTIDHPF--ICAVN---EDG---YFEGILTRRAI  137 (150)
T ss_dssp             GGCBGGG-------------------TCBSSCCEEETTCBHHHHHHHHHHCSE--EEEEC---TTC---BEEEEEEHHHH
T ss_pred             hcCCHHH-------------------HhcCCCceeCCCCCHHHHHHHHHhCCE--EEEEC---CCC---cEEEEEEHHHH
Confidence            1111111                   246778899999999999999999886  99995   346   79999999999


Q ss_pred             HHHHHhhcc
Q 014342          310 LKCICRHFK  318 (426)
Q Consensus       310 l~~l~~~~~  318 (426)
                      ++++.....
T Consensus       138 l~~l~~~~~  146 (150)
T 3lqn_A          138 LKLLNKKVR  146 (150)
T ss_dssp             HHHHHHHC-
T ss_pred             HHHHHHHhH
Confidence            999887654

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=99.58  E-value=9.4e-15  Score=127.45  Aligned_cols=129  Identities=13%  Similarity=0.137  Sum_probs=97.6

Q ss_pred             CCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccccc
Q 014342          257 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL  336 (426)
Q Consensus       257 ~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i  336 (426)
                      |.++++++.+++++.+|++.|.+++++++||+|+ +++|   +++|+||..||++++.......   ......++.+++.
T Consensus        19 m~~~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~-~~~~---~~~Givt~~dl~~~~~~~~~~~---~~~~~~~v~~~m~   91 (164)
T 2pfi_A           19 MNHSITTLAKDTPLEEVVKVVTSTDVTEYPLVES-TESQ---ILVGIVQRAQLVQALQAEPPSR---APGHQQCLQDILA   91 (164)
T ss_dssp             CBCCCCCEETTCBHHHHHHHHHTCCCSEEEEESC-TTTC---BEEEEEEHHHHHHHHHC----------CCCCBHHHHHH
T ss_pred             cCCCCeEECCCCcHHHHHHHHHhCCCCceeEEec-CCCC---EEEEEEEHHHHHHHHHhhcccc---CCcccchhhhhhc
Confidence            4667888999999999999999999999999952 1245   7999999999998875432110   0112234444442


Q ss_pred             cccccccCCCCCCC-eEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHhcc
Q 014342          337 GTWVPRIGEANGRP-FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDK  400 (426)
Q Consensus       337 ~~~~~~~~~~~~~~-v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~~~  400 (426)
                      ....       ..+ ++++.+++++.+|+++|.+++++++||+| +|+++|+||++||++.+...
T Consensus        92 ~~~~-------~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~l~Giit~~dil~~~~~~  148 (164)
T 2pfi_A           92 RGCP-------TEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTS-RGRAVGCVSWVEMKKAISNL  148 (164)
T ss_dssp             TTCC-------CBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHHHHHHHH
T ss_pred             cccc-------ccCCceEECCCCcHHHHHHHHHHhCCCEEEEEE-CCEEEEEEEHHHHHHHHHhh
Confidence            1100       012 67899999999999999999999999999 79999999999999887653

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=99.58  E-value=1.9e-15  Score=127.43  Aligned_cols=116  Identities=14%  Similarity=0.239  Sum_probs=94.4

Q ss_pred             CCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH-HHHhhccccCCCcccccccccccc
Q 014342          257 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK-CICRHFKHSSSSLPILQQPVSSIQ  335 (426)
Q Consensus       257 ~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~-~l~~~~~~~~~~~~~~~~~v~~l~  335 (426)
                      |.++++++.+++++.+|++.|.+++++++||+|+   ++   +++|++|..|+++ ++.....       ....++.++|
T Consensus        14 m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~---~~---~~~Givt~~dl~~~~~~~~~~-------~~~~~v~~~m   80 (133)
T 1y5h_A           14 MNAGVTCVGEHETLTAAAQYMREHDIGALPICGD---DD---RLHGMLTDRDIVIKGLAAGLD-------PNTATAGELA   80 (133)
T ss_dssp             SEETCCCEETTSBHHHHHHHHHHHTCSEEEEECG---GG---BEEEEEEHHHHHHTTGGGTCC-------TTTSBHHHHH
T ss_pred             hcCCceEeCCCCCHHHHHHHHHHhCCCeEEEECC---CC---eEEEEEeHHHHHHHHHhcCCC-------ccccCHHHHh
Confidence            4567788999999999999999999999999952   35   7999999999984 4433211       1234455444


Q ss_pred             ccccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHh
Q 014342          336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  398 (426)
Q Consensus       336 i~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~  398 (426)
                      .            ++++++.+++++.+|+++|.+++++++||+|+ |+++|+||++||++.+.
T Consensus        81 ~------------~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-g~~~Giit~~dil~~l~  130 (133)
T 1y5h_A           81 R------------DSIYYVDANASIQEMLNVMEEHQVRRVPVISE-HRLVGIVTEADIARHLP  130 (133)
T ss_dssp             T------------TCCCCEETTCCHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHTCC
T ss_pred             c------------CCCEEECCCCCHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHHH
Confidence            2            47778999999999999999999999999997 99999999999997543

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=99.58  E-value=2.7e-15  Score=126.27  Aligned_cols=124  Identities=19%  Similarity=0.291  Sum_probs=99.4

Q ss_pred             ccccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhccc
Q 014342          153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETH  232 (426)
Q Consensus       153 ~~~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~  232 (426)
                      .+.++.|+|.....+++++++.|+.+|++.|.++++.++||+|++.++++|+||..|++..+.   . .         ..
T Consensus         3 ~~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~---~-~---------~~   69 (129)
T 3jtf_A            3 AERTVADIMVPRSRMDLLDISQPLPQLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLRYML---E-P---------AL   69 (129)
T ss_dssp             -CCBHHHHCEEGGGCCCEETTSCHHHHHHHHHHSCCSEEEEESSSTTCEEEEEEGGGGGGGGT---C-T---------TS
T ss_pred             CCCCHHHhCccHHHeEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCcEEEEEEHHHHHhHhc---c-C---------Cc
Confidence            456788999866678999999999999999999999999999964479999999999865432   0 0         00


Q ss_pred             chhhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHH
Q 014342          233 TISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (426)
Q Consensus       233 ~i~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~  312 (426)
                      ++..                   .|. +++++.+++++.+|++.|.+++++++||+|   +.|   +++|+||..||++.
T Consensus        70 ~v~~-------------------~m~-~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd---~~g---~~~Giit~~Dil~~  123 (129)
T 3jtf_A           70 DIRS-------------------LVR-PAVFIPEVKRLNVLLREFRASRNHLAIVID---EHG---GISGLVTMEDVLEQ  123 (129)
T ss_dssp             CGGG-------------------GCB-CCCEEETTCBHHHHHHHHHTSSCCEEEEEC---C-C---CEEEEEEHHHHHHH
T ss_pred             CHHH-------------------HhC-CCeEeCCCCcHHHHHHHHHhcCCeEEEEEe---CCC---CEEEEEEHHHHHHH
Confidence            1111                   133 467899999999999999999999999995   335   69999999999998


Q ss_pred             HHh
Q 014342          313 ICR  315 (426)
Q Consensus       313 l~~  315 (426)
                      +..
T Consensus       124 l~g  126 (129)
T 3jtf_A          124 IVG  126 (129)
T ss_dssp             HHH
T ss_pred             HhC
Confidence            764

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=99.58  E-value=1.4e-14  Score=125.64  Aligned_cols=119  Identities=16%  Similarity=0.257  Sum_probs=95.2

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccccccc
Q 014342          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (426)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  339 (426)
                      +++++.+++++.+|++.|.+++++++||+|+   +|   +++|++|..|+++++...... . .......++.+++    
T Consensus        22 ~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~---~~---~~~Givt~~dl~~~~~~~~~~-~-~~~~~~~~v~~~m----   89 (157)
T 2emq_A           22 KVAHVQPGNYLDHALLVLTKTGYSAIPVLDT---SY---KLHGLISMTMMMDAILGLERI-E-FERLETMKVEEVM----   89 (157)
T ss_dssp             GSCCBCTTSBHHHHHHHHHHSSSSEEEEECT---TC---CEEEEEEHHHHHHHSBCSSSB-C-GGGGGTCBGGGTC----
T ss_pred             cceEECCCCcHHHHHHHHHHCCceEEEEEcC---CC---CEEEEeeHHHHHHHHhccccc-c-hHHhcCCcHHHHh----
Confidence            7788999999999999999999999999952   35   699999999999875432100 0 0011233444443    


Q ss_pred             ccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHhcc
Q 014342          340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDK  400 (426)
Q Consensus       340 ~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~~~  400 (426)
                              .++++++.+++++.+|+++|.++++  +||||++|+++|+||++||++.+...
T Consensus        90 --------~~~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd~~g~~~Giit~~dil~~~~~~  140 (157)
T 2emq_A           90 --------NRNIPRLRLDDSLMKAVGLIVNHPF--VCVENDDGYFAGIFTRREVLKQLNKQ  140 (157)
T ss_dssp             --------BCCCCEEETTSBHHHHHHHHHHSSE--EEEECSSSSEEEEEEHHHHHHHHHHT
T ss_pred             --------CCCCceecCCCcHHHHHHHHhhCCE--EEEEcCCCeEEEEEEHHHHHHHHHHH
Confidence                    2577899999999999999999988  99999889999999999999987764

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=99.58  E-value=8.3e-15  Score=131.03  Aligned_cols=119  Identities=13%  Similarity=0.172  Sum_probs=98.3

Q ss_pred             CCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccccc
Q 014342          257 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL  336 (426)
Q Consensus       257 ~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i  336 (426)
                      |.++++++.+++++.+|++.|.+++++++||+++   +|   +++|++|..||++++.....      .....++.++| 
T Consensus        15 m~~~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~---~g---~~vGivt~~dl~~~~~~~~~------~~~~~~v~~im-   81 (184)
T 1pvm_A           15 MNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDD---NG---NDVGLLSERSIIKRFIPRNK------KPDEVPIRLVM-   81 (184)
T ss_dssp             SBTTCCEEETTCBHHHHHHHHHHHTCCEEEEECT---TS---CEEEEEEHHHHHHHTGGGCC------CGGGSBGGGTS-
T ss_pred             cCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC---CC---cEEEEEeHHHHHHHHhhccc------CcccCCHHHHh-
Confidence            5678899999999999999999999999999952   35   69999999999987653211      11233444444 


Q ss_pred             cccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHhc
Q 014342          337 GTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  399 (426)
Q Consensus       337 ~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~~  399 (426)
                                 .++++++.+++++.+|+++|.+++++.+||+|++|+++|+||+.||++.+..
T Consensus        82 -----------~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~  133 (184)
T 1pvm_A           82 -----------RKPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYLSR  133 (184)
T ss_dssp             -----------BSSCCEEETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTTTSCH
T ss_pred             -----------CCCCcEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHHHh
Confidence                       2477899999999999999999999999999988999999999999876544

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=99.57  E-value=1.3e-15  Score=129.57  Aligned_cols=126  Identities=13%  Similarity=0.209  Sum_probs=98.3

Q ss_pred             cccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccc
Q 014342          154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHT  233 (426)
Q Consensus       154 ~~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~  233 (426)
                      +.++.|+|....++++++++.|+.+|+++|.++++.++||+|.+.++++|+||..|++..+..   .       .....+
T Consensus         2 ~~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~---~-------~~~~~~   71 (136)
T 3lfr_A            2 DLQVRDIMVPRSQMISIKATQTPREFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLLPLILK---A-------DGDSDD   71 (136)
T ss_dssp             -CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGGS---S-------SGGGCC
T ss_pred             CCChHhccccHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHh---c-------cCCCcC
Confidence            467888897656789999999999999999999999999999644799999999998754321   0       000111


Q ss_pred             hhhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHH
Q 014342          234 ISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCI  313 (426)
Q Consensus       234 i~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l  313 (426)
                      ++.                   .|. +++++.+++++.+|+..|.+++++++||+|   +.|   +++|+||..||++.+
T Consensus        72 v~~-------------------~m~-~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd---~~g---~lvGiit~~Dil~~l  125 (136)
T 3lfr_A           72 VKK-------------------LLR-PATFVPESKRLNVLLREFRANHNHMAIVID---EYG---GVAGLVTIEDVLEQI  125 (136)
T ss_dssp             GGG-------------------TCB-CCCEEETTCBHHHHHHHHHHHTCCEEEEEC---TTS---CEEEEEEHHHHHTTC
T ss_pred             HHH-------------------HcC-CCeEECCCCcHHHHHHHHHhcCCeEEEEEe---CCC---CEEEEEEHHHHHHHH
Confidence            111                   233 378999999999999999999999999995   345   699999999999876


Q ss_pred             Hh
Q 014342          314 CR  315 (426)
Q Consensus       314 ~~  315 (426)
                      ..
T Consensus       126 ~~  127 (136)
T 3lfr_A          126 VG  127 (136)
T ss_dssp             --
T ss_pred             hC
Confidence            54

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=99.56  E-value=2.6e-14  Score=134.28  Aligned_cols=139  Identities=12%  Similarity=0.116  Sum_probs=98.8

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCC-------------
Q 014342          256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSS-------------  322 (426)
Q Consensus       256 ~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~-------------  322 (426)
                      +|+++++++.+++++.+|+++|.+++++++||+++ .+.+   +++|+||++||++++.........             
T Consensus        18 iMt~~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~-~~~~---~LvGiIt~~dl~~~l~~~~~~~~~~~~~~~~~~~~~~   93 (250)
T 2d4z_A           18 IMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDT-PDTN---TLLGSIDRTEVEGLLQRRISAYRRQPAAAAEADEEGR   93 (250)
T ss_dssp             SSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESC-TTTC---BEEEEEEHHHHHHHHHHHHHTTSSSCCCCCCBCCC--
T ss_pred             hcCCCCeEECCCCCHHHHHHHHHhcCCCEEEEEec-CCCC---eEEEEEEHHHHHHHHHHhhhhhhhhhhhhhccccccc
Confidence            47889999999999999999999999999999963 2235   799999999999887644210000             


Q ss_pred             --------------Cccccccc--------------------------------------------------cccccc--
Q 014342          323 --------------SLPILQQP--------------------------------------------------VSSIQL--  336 (426)
Q Consensus       323 --------------~~~~~~~~--------------------------------------------------v~~l~i--  336 (426)
                                    ...++...                                                  ..++.+  
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  173 (250)
T 2d4z_A           94 NGETGASFTGEAESSFAYIDQEDAEGQQREGLEAVKVQTEDPRPPSPVPAEEPTQTSGIYQKKQKGTGQVASRFEEMLTL  173 (250)
T ss_dssp             -------------------------------------------------------------------------CCSCCBH
T ss_pred             ccccccccccCCcceeeeccccccccccccCccccCCcccCCccccccccccccccccccccccccccccCcccccccCh
Confidence                          00000000                                                  000000  


Q ss_pred             ---ccc----cc-cc--C-CCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHhc
Q 014342          337 ---GTW----VP-RI--G-EANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  399 (426)
Q Consensus       337 ---~~~----~~-~~--~-~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~~  399 (426)
                         ..|    +. .+  . ..|.+.++++.++++|.+|..+|...+++++||++ .|+|+||||+.||++.+..
T Consensus       174 ~~~~~~~~~~l~~~Vdl~~~~md~sP~tv~~~tsL~~v~~LF~~lglr~l~V~~-~GrLVGIVTrkDl~kai~~  246 (250)
T 2d4z_A          174 EEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS-MGKLVGVVALAEIQAAIEG  246 (250)
T ss_dssp             HHHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHC
T ss_pred             hhhhhHHHHhcCceeccccccccCCCeEECCCCcHHHHHHHHHHhCCeEEEEEE-CCEEEEEEEHHHHHHHHHH
Confidence               000    00 01  1 12446778999999999999999999999999998 6999999999999998764

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=99.56  E-value=9.6e-15  Score=129.43  Aligned_cols=123  Identities=20%  Similarity=0.276  Sum_probs=93.6

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhcccc---------CCCc------
Q 014342          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHS---------SSSL------  324 (426)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~---------~~~~------  324 (426)
                      +++++.+++++.+|++.|.+++++++||+|   +++   +++|+||..||++++.......         ....      
T Consensus        15 ~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd---~~~---~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (180)
T 3sl7_A           15 NLHVVKPSTSVDDALELLVEKKVTGLPVID---DNW---TLVGVVSDYDLLALDSISGRSQNDTNLFPDVDSTWKTFNEL   88 (180)
T ss_dssp             GCCCBCTTSBHHHHHHHHHHHTCSEEEEEC---TTC---BEEEEEEHHHHTCC-------------------CCCSHHHH
T ss_pred             CceeeCCCCcHHHHHHHHHHcCCCeEEEEC---CCC---eEEEEEEHHHHHhhhhhccccCCcccccccccchhhhhHHH
Confidence            678999999999999999999999999995   245   7999999999986432110000         0000      


Q ss_pred             -----cccccccccccccccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHhc
Q 014342          325 -----PILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  399 (426)
Q Consensus       325 -----~~~~~~v~~l~i~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~~  399 (426)
                           .....++.++|            .++++++++++++.+|+++|.+++++++||+|++|+++|+||++||++.+..
T Consensus        89 ~~~~~~~~~~~v~~~m------------~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dil~~~~~  156 (180)
T 3sl7_A           89 QKLISKTYGKVVGDLM------------TPSPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGNVVRAALQ  156 (180)
T ss_dssp             HHHHHTTTTCBHHHHS------------EESCCCEETTSBHHHHHHHHTTSTTCEEEEECTTCBEEEEEEHHHHHHHHHH
T ss_pred             HHHHhccccccHHHHh------------CCCceEeCCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHHH
Confidence                 01122333333            3467789999999999999999999999999999999999999999997764


Q ss_pred             c
Q 014342          400 K  400 (426)
Q Consensus       400 ~  400 (426)
                      .
T Consensus       157 ~  157 (180)
T 3sl7_A          157 I  157 (180)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=99.56  E-value=2.2e-14  Score=130.95  Aligned_cols=115  Identities=16%  Similarity=0.168  Sum_probs=97.6

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhC---CCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccc
Q 014342          256 PCPRPLVQAGPYDSLKEVALKILQN---KVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVS  332 (426)
Q Consensus       256 ~~~~~~v~v~~~~sl~~a~~~m~~~---~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~  332 (426)
                      .|++.++++.+++++.+|++.|.+.   +++.+||+|   +.+   +++|+||.+|++..     .        ...++.
T Consensus        59 iM~~~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd---~~~---~lvGivt~~dll~~-----~--------~~~~v~  119 (205)
T 3kxr_A           59 YTDHQMLVLSDKATVAQAQRFFRRIELDCNDNLFIVD---EAD---KYLGTVRRYDIFKH-----E--------PHEPLI  119 (205)
T ss_dssp             GCBCCCCEEETTCBHHHHHHHHHHCCCTTCCEEEEEC---TTC---BEEEEEEHHHHTTS-----C--------TTSBGG
T ss_pred             hccCceEEECCCCcHHHHHHHHHhhCccCeeEEEEEc---CCC---eEEEEEEHHHHHhC-----C--------CcchHH
Confidence            5788899999999999999999987   899999995   245   79999999998642     0        133455


Q ss_pred             cccccccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHhccc
Q 014342          333 SIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKA  401 (426)
Q Consensus       333 ~l~i~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~~~~  401 (426)
                      ++|            .++++++++++++.+|+++|.+++++.+||||++|+++|+||..||+..+....
T Consensus       120 ~im------------~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD~~g~lvGiIT~~Dil~~i~~e~  176 (205)
T 3kxr_A          120 SLL------------SEDSRALTANTTLLDAAEAIEHSREIELPVIDDAGELIGRVTLRAATALVREHY  176 (205)
T ss_dssp             GGC------------CSSCCCEETTSCHHHHHHHHHTSSCSEEEEECTTSBEEEEEEHHHHHHHHHHHH
T ss_pred             HHh------------cCCCeEECCCCCHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHHHHHH
Confidence            554            257789999999999999999999999999999999999999999999887553

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=99.55  E-value=1.1e-14  Score=127.77  Aligned_cols=130  Identities=15%  Similarity=0.243  Sum_probs=103.5

Q ss_pred             hccccccccCCCC-CcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhc
Q 014342          152 LSTHTVYELLPDS-GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELE  230 (426)
Q Consensus       152 l~~~~~~d~~p~s-~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~  230 (426)
                      |...++.|+|... ..+++++++.++.+|+++|.++++..+||+|+ +++++|+||..|++..+.....        ...
T Consensus        21 l~~~~v~dim~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~-~~~~~Givt~~dl~~~~~~~~~--------~~~   91 (165)
T 3fhm_A           21 GMATFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDA-DGVVLGIFTERDLVKAVAGQGA--------ASL   91 (165)
T ss_dssp             SSSCBHHHHHHHHCSCCCEECTTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHHHHGG--------GGG
T ss_pred             hhhcCHHHHhccCCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCeEEEEEEHHHHHHHHHhcCC--------ccc
Confidence            4456777888652 46889999999999999999999999999995 4799999999999877653210        001


Q ss_pred             ccchhhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHH
Q 014342          231 THTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDIL  310 (426)
Q Consensus       231 ~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil  310 (426)
                      ..++..                   .|.++++++.+++++.+|++.|.+++++++||+|   + |   +++|+||..||+
T Consensus        92 ~~~v~~-------------------~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd---~-g---~~~Giit~~dil  145 (165)
T 3fhm_A           92 QQSVSV-------------------AMTKNVVRCQHNSTTDQLMEIMTGGRFRHVPVEE---N-G---RLAGIISIGDVV  145 (165)
T ss_dssp             TSBGGG-------------------TSBSSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE---T-T---EEEEEEEHHHHH
T ss_pred             cCCHHH-------------------HhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEE---C-C---EEEEEEEHHHHH
Confidence            111111                   2457788999999999999999999999999995   2 6   799999999999


Q ss_pred             HHHHhh
Q 014342          311 KCICRH  316 (426)
Q Consensus       311 ~~l~~~  316 (426)
                      +++...
T Consensus       146 ~~~~~~  151 (165)
T 3fhm_A          146 KARIGE  151 (165)
T ss_dssp             HHTTCC
T ss_pred             HHHHHH
Confidence            987654

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=99.55  E-value=3.9e-14  Score=119.26  Aligned_cols=128  Identities=15%  Similarity=0.232  Sum_probs=102.5

Q ss_pred             hccccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcc
Q 014342          152 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELET  231 (426)
Q Consensus       152 l~~~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~  231 (426)
                      |.+.++.|+|..  ++++++++.++.+|++.|.++++..+||+|  +++++|++|..|++..+.....          ..
T Consensus         1 l~~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd--~~~~~Givt~~dl~~~~~~~~~----------~~   66 (133)
T 2ef7_A            1 MEEEIVKEYMKT--QVISVTKDAKLNDIAKVMTEKNIGSVIVVD--GNKPVGIITERDIVKAIGKGKS----------LE   66 (133)
T ss_dssp             CCCCBGGGTSBC--SCCEEETTCBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHHTTCC----------TT
T ss_pred             CCcccHHHhccC--CCEEECCCCcHHHHHHHHHhcCCCEEEEEE--CCEEEEEEcHHHHHHHHhcCCC----------cc
Confidence            456788999976  577889999999999999999999999999  3799999999999776542110          00


Q ss_pred             cchhhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342          232 HTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (426)
Q Consensus       232 ~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~  311 (426)
                      .++..                   .|.++++++.+++++.+|++.|.+++++++||+|   ++|   +++|+||..||++
T Consensus        67 ~~v~~-------------------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd---~~g---~~~Giit~~dll~  121 (133)
T 2ef7_A           67 TKAEE-------------------FMTASLITIREDSPITGALALMRQFNIRHLPVVD---DKG---NLKGIISIRDITR  121 (133)
T ss_dssp             CBGGG-------------------TSEECCCCEETTSBHHHHHHHHHHHTCSEEEEEC---TTS---CEEEEEEHHHHHH
T ss_pred             cCHHH-------------------HcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEC---CCC---eEEEEEEHHHHHH
Confidence            11111                   2355778899999999999999999999999995   235   6999999999999


Q ss_pred             HHHhhcc
Q 014342          312 CICRHFK  318 (426)
Q Consensus       312 ~l~~~~~  318 (426)
                      ++.+...
T Consensus       122 ~~~~~~~  128 (133)
T 2ef7_A          122 AIDDMFE  128 (133)
T ss_dssp             HHHHHC-
T ss_pred             HHHHHHH
Confidence            9877654

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=99.55  E-value=1.5e-14  Score=125.99  Aligned_cols=119  Identities=11%  Similarity=0.167  Sum_probs=95.1

Q ss_pred             CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccccccc
Q 014342          260 PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTW  339 (426)
Q Consensus       260 ~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~  339 (426)
                      +++++.+++++.+|++.|.+++++++||+|   ++|   +++|+||..||++++...... . .......++.+++    
T Consensus        25 ~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd---~~~---~lvGivt~~dl~~~~~~~~~~-~-~~~~~~~~v~~~m----   92 (159)
T 1yav_A           25 KVAHVQVGNNLEHALLVLTKTGYTAIPVLD---PSY---RLHGLIGTNMIMNSIFGLERI-E-FEKLDQITVEEVM----   92 (159)
T ss_dssp             GSCCEETTCBHHHHHHHHHHHCCSEEEEEC---TTC---BEEEEEEHHHHHHHHBCSSSB-C-GGGTTTSBHHHHS----
T ss_pred             ceEEECCCCcHHHHHHHHHhCCCcEEEEEC---CCC---CEEEEeEHHHHHHHhhhhccc-c-hhhhccCCHHHhc----
Confidence            678899999999999999999999999995   245   799999999999877532110 0 0011233444443    


Q ss_pred             ccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHhcc
Q 014342          340 VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDK  400 (426)
Q Consensus       340 ~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~~~  400 (426)
                              .++++++.+++++.+|+++|.++++  +||+|++|+++|+||++||++.+...
T Consensus        93 --------~~~~~~v~~~~~l~~a~~~m~~~~~--lpVvd~~g~~vGiit~~dil~~~~~~  143 (159)
T 1yav_A           93 --------LTDIPRLHINDPIMKGFGMVINNGF--VCVENDEQVFEGIFTRRVVLKELNKH  143 (159)
T ss_dssp             --------BCSCCEEETTSBHHHHHHHTTTCSE--EEEECTTCBEEEEEEHHHHHHHHHHH
T ss_pred             --------CCCCceEcCCCCHHHHHHHHHhCCE--EEEEeCCCeEEEEEEHHHHHHHHHHH
Confidence                    2477899999999999999999887  99999889999999999999987654

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=99.55  E-value=1.4e-14  Score=126.00  Aligned_cols=122  Identities=16%  Similarity=0.208  Sum_probs=98.5

Q ss_pred             HhccccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhc
Q 014342          151 FLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELE  230 (426)
Q Consensus       151 ~l~~~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~  230 (426)
                      .|...++.|+|.....+++++++.|+.+|++.|.++++.++||+|.+.++++|+||..|++..+..           . .
T Consensus        34 ~l~~~~v~diM~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~-----------~-~  101 (156)
T 3oi8_A           34 DFSDLEVRDAMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGEDKDEVLGILHAKDLLKYMFN-----------P-E  101 (156)
T ss_dssp             HHTTCBGGGTCEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGSSC-----------G-G
T ss_pred             ccCCCCHhheeeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHc-----------C-C
Confidence            366889999998766789999999999999999999999999999654599999999998643210           0 1


Q ss_pred             ccchhhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHH
Q 014342          231 THTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDIL  310 (426)
Q Consensus       231 ~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil  310 (426)
                      ..++..+                   |. +++++.+++++.+|++.|.+++++++||+|   +.|   +++|+||..||+
T Consensus       102 ~~~v~~i-------------------m~-~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd---~~g---~~~Givt~~Dil  155 (156)
T 3oi8_A          102 QFHLKSI-------------------LR-PAVFVPEGKSLTALLKEFREQRNHMAIVID---EYG---GTSGLVTFEDII  155 (156)
T ss_dssp             GCCHHHH-------------------CB-CCCEEETTSBHHHHHHHHHHTTCCEEEEEC---TTS---SEEEEEEHHHHC
T ss_pred             cccHHHH-------------------cC-CCEEECCCCCHHHHHHHHHhcCCeEEEEEC---CCC---CEEEEEEHHHhc
Confidence            1112221                   33 368899999999999999999999999995   345   699999999985

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=99.54  E-value=1.1e-14  Score=122.14  Aligned_cols=124  Identities=15%  Similarity=0.175  Sum_probs=99.2

Q ss_pred             ccccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhccc
Q 014342          153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETH  232 (426)
Q Consensus       153 ~~~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~  232 (426)
                      .+.++.++|...  +.+++++.++.+|++.|.++++..+||+|+  ++++|+||..|+...+.   ....       ...
T Consensus         3 ~s~~v~~~m~~~--~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~--~~~~Givt~~dl~~~~~---~~~~-------~~~   68 (128)
T 3gby_A            3 ASVTFSYLAETD--YPVFTLGGSTADAARRLAASGCACAPVLDG--ERYLGMVHLSRLLEGRK---GWPT-------VKE   68 (128)
T ss_dssp             TTCBGGGGCBCC--SCCEETTSBHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHTTCS---SSCC-------TTC
T ss_pred             cceEHHHhhcCC--cceECCCCCHHHHHHHHHHCCCcEEEEEEC--CEEEEEEEHHHHHHHHh---hCCc-------ccC
Confidence            357889999774  677889999999999999999999999996  79999999999874321   1000       001


Q ss_pred             chhhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHH
Q 014342          233 TISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (426)
Q Consensus       233 ~i~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~  312 (426)
                      ++..                   .|.++++++.+++++.+|++.|.+++++++||+|   ++|   +++|++|..|++++
T Consensus        69 ~v~~-------------------~m~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd---~~g---~~~Giit~~dll~~  123 (128)
T 3gby_A           69 KLGE-------------------ELLETVRSYRPGEQLFDNLISVAAAKCSVVPLAD---EDG---RYEGVVSRKRILGF  123 (128)
T ss_dssp             BCCG-------------------GGCBCCCCBCTTSBGGGSHHHHHHCSSSEEEEEC---TTC---BEEEEEEHHHHHHH
T ss_pred             cHHH-------------------HccCCCcEECCCCCHHHHHHHHHhCCCcEEEEEC---CCC---CEEEEEEHHHHHHH
Confidence            1111                   2456778899999999999999999999999995   346   79999999999998


Q ss_pred             HHh
Q 014342          313 ICR  315 (426)
Q Consensus       313 l~~  315 (426)
                      +.+
T Consensus       124 l~~  126 (128)
T 3gby_A          124 LAE  126 (128)
T ss_dssp             HHT
T ss_pred             HHh
Confidence            764

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=99.54  E-value=4.4e-14  Score=125.78  Aligned_cols=123  Identities=12%  Similarity=0.151  Sum_probs=95.6

Q ss_pred             ceEe--CCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccC----CCc----------
Q 014342          261 LVQA--GPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSS----SSL----------  324 (426)
Q Consensus       261 ~v~v--~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~----~~~----------  324 (426)
                      ++++  .+++++.+|++.|.+++++++||+++ +++|   +++|+||..|+++.+........    ...          
T Consensus        25 ~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~-d~~~---~lvGiit~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (185)
T 2j9l_A           25 LLTVLTQDSMTVEDVETIISETTYSGFPVVVS-RESQ---RLVGFVLRRDLIISIENARKKQDGVVSTSIIYFTEHSPPL  100 (185)
T ss_dssp             CCCCEESSCEEHHHHHHHHHHCCCSEEEEESC-TTTC---BEEEEEEHHHHHHHHHHHHTSCSCCCTTCEEECSSSCCCC
T ss_pred             eEEEecCCCccHHHHHHHHHhcCCCceeEEEE-CCCC---eEEEEEEHHHHHHHHHhhcccCCCccccceeecccCCccc
Confidence            6778  99999999999999999999999931 1345   79999999999998765321000    000          


Q ss_pred             ---cccccccccccccccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHhcc
Q 014342          325 ---PILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDK  400 (426)
Q Consensus       325 ---~~~~~~v~~l~i~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~~~  400 (426)
                         .....++.++            |.++++++.+++++.+|+++|.+++++++||+| +|+++|+||++||++.+...
T Consensus       101 ~~~~~~~~~v~~i------------m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd-~g~~vGiit~~dll~~l~~~  166 (185)
T 2j9l_A          101 PPYTPPTLKLRNI------------LDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH-NGRLLGIITKKDVLKHIAQM  166 (185)
T ss_dssp             CTTCCCCEECGGG------------EESSCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHHH
T ss_pred             ccccccCccHHHh------------hCcCCeEeCCCCCHHHHHHHHHhCCCcEEEEEE-CCEEEEEEEHHHHHHHHHHh
Confidence               0112223332            235788999999999999999999999999999 79999999999999987654

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.53  E-value=4.5e-14  Score=129.58  Aligned_cols=112  Identities=14%  Similarity=0.156  Sum_probs=95.6

Q ss_pred             CCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccccc
Q 014342          257 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL  336 (426)
Q Consensus       257 ~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i  336 (426)
                      |.++++++.+++++.+|+++|.+++++++||+|   +++   +++|++|.+|+++.+.             +.++.++|.
T Consensus        19 ~~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd---~~~---~l~Givt~~dl~~~~~-------------~~~v~~im~   79 (213)
T 1vr9_A           19 VTQDFPMVEESATVRECLHRMRQYQTNECIVKD---REG---HFRGVVNKEDLLDLDL-------------DSSVFNKVS   79 (213)
T ss_dssp             CBSCSCEEETTCBHHHHHHHHHHTTSSEEEEEC---TTS---BEEEEEEGGGGTTSCT-------------TSBSGGGCB
T ss_pred             hcCCCeEECCCCcHHHHHHHHHHCCCCEEEEEc---CCC---EEEEEEEHHHHHhhcC-------------CCcHHHHcc
Confidence            567889999999999999999999999999995   235   7999999999875321             234555542


Q ss_pred             cccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHhc
Q 014342          337 GTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  399 (426)
Q Consensus       337 ~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~~  399 (426)
                                  ++++++.+++++.+|+++|.+++++++||+|++|+++|+||.+||++.+..
T Consensus        80 ------------~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~Dil~~~~~  130 (213)
T 1vr9_A           80 ------------LPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIE  130 (213)
T ss_dssp             ------------CTTCCEETTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHHHH
T ss_pred             ------------CCCEEECCCCcHHHHHHHHHHhCCCEEEEEcCCCEEEEEEEHHHHHHHHHH
Confidence                        467889999999999999999999999999988999999999999987653

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=99.53  E-value=2e-14  Score=123.49  Aligned_cols=142  Identities=15%  Similarity=0.200  Sum_probs=102.0

Q ss_pred             ccccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhccc
Q 014342          153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETH  232 (426)
Q Consensus       153 ~~~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~  232 (426)
                      +..++.|+|.....+++++++.++.+|+++|.++++..+||+|+ +++++|+||..|++..+.....   ......+...
T Consensus         3 ~~~~v~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~~G~vt~~dl~~~~~~~~~---~~~~~~~~~~   78 (152)
T 4gqw_A            3 GVYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDE-DWKLVGLVSDYDLLALDSGDST---WKTFNAVQKL   78 (152)
T ss_dssp             CCSBGGGTSEESTTCCCBCTTSBHHHHHHHHHHTTCSEEEEECT-TCBEEEEEEHHHHTTCC----C---CHHHHHHHTC
T ss_pred             ceEEhhhccCCCCCCeEECCCCcHHHHHHHHHHcCCceEEEEeC-CCeEEEEEEHHHHHHhhcccCc---ccchHHHHHH
Confidence            45788999988767899999999999999999999999999996 4799999999998653221000   0000000000


Q ss_pred             chhhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHH
Q 014342          233 TISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (426)
Q Consensus       233 ~i~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~  312 (426)
                      ...........            .|.++++++.+++++.+|++.|.+++++++||++   ++|   +++|+||..||+++
T Consensus        79 ~~~~~~~~v~~------------~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd---~~g---~~~Giit~~dil~~  140 (152)
T 4gqw_A           79 LSKTNGKLVGD------------LMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVD---SDG---KLVGIITRGNVVRA  140 (152)
T ss_dssp             -----CCBHHH------------HSEESCCCEESSSBHHHHHHHHHHSSCCEEEEEC---TTS---BEEEEEEHHHHHHH
T ss_pred             HHHhccccHHH------------hcCCCceEECCCCcHHHHHHHHHHCCCCEEEEEC---CCC---cEEEEEEHHHHHHH
Confidence            00000000111            1456678899999999999999999999999995   346   79999999999999


Q ss_pred             HHhh
Q 014342          313 ICRH  316 (426)
Q Consensus       313 l~~~  316 (426)
                      +...
T Consensus       141 ~~~~  144 (152)
T 4gqw_A          141 ALQI  144 (152)
T ss_dssp             HHC-
T ss_pred             HHhc
Confidence            8754

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=99.53  E-value=7e-14  Score=116.16  Aligned_cols=121  Identities=21%  Similarity=0.287  Sum_probs=96.5

Q ss_pred             cccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchh
Q 014342          156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTIS  235 (426)
Q Consensus       156 ~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~  235 (426)
                      ++.|+|..  ++++++++.|+.+|++.|.++++..+||+|  +++++|++|..|++..+.....         ....++.
T Consensus         2 ~v~~~m~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd--~~~~~G~it~~dl~~~~~~~~~---------~~~~~v~   68 (125)
T 1pbj_A            2 RVEDVMVT--DVDTIDITASLEDVLRNYVENAKGSSVVVK--EGVRVGIVTTWDVLEAIAEGDD---------LAEVKVW   68 (125)
T ss_dssp             CHHHHCBC--SCCEEETTCBHHHHHHHHHHHCCCEEEEEE--TTEEEEEEEHHHHHHHHHHTCC---------TTTSBHH
T ss_pred             CHHHhcCC--CceEECCCCcHHHHHHHHHHcCCCEEEEEe--CCeeEEEEeHHHHHHHHhcCCc---------ccccCHH
Confidence            45667755  678889999999999999999999999999  4799999999999876543110         0111122


Q ss_pred             hhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHh
Q 014342          236 AWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICR  315 (426)
Q Consensus       236 ~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~  315 (426)
                      .+                   |.++++++.+++++.+|++.|.+++++++||++   + |   +++|++|..|+++++..
T Consensus        69 ~~-------------------m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd---~-~---~~~Gvit~~dl~~~l~~  122 (125)
T 1pbj_A           69 EV-------------------MERDLVTISPRATIKEAAEKMVKNVVWRLLVEE---D-D---EIIGVISATDILRAKMA  122 (125)
T ss_dssp             HH-------------------CBCGGGEECTTSCHHHHHHHHHHHTCSEEEEEE---T-T---EEEEEEEHHHHHHHHC-
T ss_pred             HH-------------------cCCCCeEECCCCCHHHHHHHHHhcCCcEEEEEE---C-C---EEEEEEEHHHHHHHHHh
Confidence            21                   356788999999999999999999999999995   2 5   79999999999998753

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=99.53  E-value=4.7e-14  Score=119.43  Aligned_cols=128  Identities=17%  Similarity=0.316  Sum_probs=100.6

Q ss_pred             HHhccccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHH-HHHHHHhccCCCCCChhh
Q 014342          150 SFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDF-ILILRELGTNGSNLTEEE  228 (426)
Q Consensus       150 ~~l~~~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dl-i~~l~~~~~~~~~~~~~~  228 (426)
                      ++|...++.++|.+  +++++.++.++.+|+++|.++++..+||+|+ +++++|++|..|+ ...+..   .       .
T Consensus         3 ~~l~~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~~Givt~~dl~~~~~~~---~-------~   69 (138)
T 2p9m_A            3 DTLKNIKVKDVMTK--NVITAKRHEGVVEAFEKMLKYKISSLPVIDD-ENKVIGIVTTTDIGYNLIRD---K-------Y   69 (138)
T ss_dssp             --CTTCBGGGTSBC--SCCCEETTSBHHHHHHHHHHHTCCEEEEECT-TCBEEEEEEHHHHHHHHTTT---C-------C
T ss_pred             cccccCCHHHhhcC--CceEECCCCcHHHHHHHHHHCCCcEEEEECC-CCeEEEEEEHHHHHHHHHhh---c-------c
Confidence            56788999999965  6778899999999999999999999999995 4799999999998 654321   0       0


Q ss_pred             hcccchhhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCC-----CCeeEEEecCCCCCCcceEEEE
Q 014342          229 LETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNK-----VATVPIIHSTGPAGSCQEILYL  303 (426)
Q Consensus       229 l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~-----v~~lpVvd~d~~~g~~~~lvGi  303 (426)
                      ....++..+                   |.++++++.+++++.+|++.|.+++     ++++||+|   ++|   +++|+
T Consensus        70 ~~~~~v~~~-------------------m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd---~~g---~~~Gi  124 (138)
T 2p9m_A           70 TLETTIGDV-------------------MTKDVITIHEDASILEAIKKMDISGKKEEIINQLPVVD---KNN---KLVGI  124 (138)
T ss_dssp             CSSCBHHHH-------------------SCSSCCCEETTSBHHHHHHHHTCC-----CCCEEEEEC---TTS---BEEEE
T ss_pred             cCCcCHHHH-------------------hCCCcEEECCCCCHHHHHHHHHhcCCccccccEEEEEC---CCC---eEEEE
Confidence            011112221                   3567788999999999999999999     99999995   245   79999


Q ss_pred             ecHHhHHHHHHh
Q 014342          304 ASLSDILKCICR  315 (426)
Q Consensus       304 it~~dil~~l~~  315 (426)
                      +|..|+++++.+
T Consensus       125 it~~dll~~~~~  136 (138)
T 2p9m_A          125 ISDGDIIRTISK  136 (138)
T ss_dssp             EEHHHHHHHHHH
T ss_pred             EEHHHHHHHHHh
Confidence            999999998754

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=99.52  E-value=3e-14  Score=118.05  Aligned_cols=119  Identities=19%  Similarity=0.376  Sum_probs=96.8

Q ss_pred             cccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchh
Q 014342          156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTIS  235 (426)
Q Consensus       156 ~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~  235 (426)
                      ++.|+|..  .+++++++.++.+|++.|.++++..+||+|+ +++++|++|..|++..+....        .     ++.
T Consensus         2 ~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~~G~vt~~dl~~~~~~~~--------~-----~v~   65 (122)
T 3kpb_A            2 LVKDILSK--PPITAHSNISIMEAAKILIKHNINHLPIVDE-HGKLVGIITSWDIAKALAQNK--------K-----TIE   65 (122)
T ss_dssp             BHHHHCCS--CCCCEETTSBHHHHHHHHHHHTCSCEEEECT-TSBEEEEECHHHHHHHHHTTC--------C-----BGG
T ss_pred             chHHhhCC--CCEEeCCCCcHHHHHHHHHHcCCCeEEEECC-CCCEEEEEEHHHHHHHHHhcc--------c-----CHH
Confidence            45677766  5778899999999999999999999999995 479999999999887654210        0     111


Q ss_pred             hhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHh
Q 014342          236 AWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICR  315 (426)
Q Consensus       236 ~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~  315 (426)
                      .                   .|.++++++.+++++.+|++.|.+++++++||+|   ++|   +++|++|..||++++..
T Consensus        66 ~-------------------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd---~~g---~~~Givt~~dl~~~l~~  120 (122)
T 3kpb_A           66 E-------------------IMTRNVITAHEDEPVDHVAIKMSKYNISGVPVVD---DYR---RVVGIVTSEDISRLFGG  120 (122)
T ss_dssp             G-------------------TSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEEC---TTC---BEEEEEEHHHHHHHHC-
T ss_pred             H-------------------HhcCCCeEECCCCCHHHHHHHHHHhCCCeEEEEC---CCC---CEEEEEeHHHHHHHhhc
Confidence            1                   2456778899999999999999999999999995   235   79999999999998754

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=99.52  E-value=1.1e-13  Score=120.76  Aligned_cols=134  Identities=14%  Similarity=0.224  Sum_probs=102.4

Q ss_pred             cccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccc
Q 014342          154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHT  233 (426)
Q Consensus       154 ~~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~  233 (426)
                      ..++.|+|..  .++++.++.|+.+|+++|.++++..+||+|+ +++++|+||..|++..+......... ........+
T Consensus         4 ~~~v~dim~~--~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~-~~~lvGivt~~dl~~~~~~~~~~~~~-~~~~~~~~~   79 (160)
T 2o16_A            4 MIKVEDMMTR--HPHTLLRTHTLNDAKHLMEALDIRHVPIVDA-NKKLLGIVSQRDLLAAQESSLQRSAQ-GDSLAFETP   79 (160)
T ss_dssp             CCBGGGTSEE--SCCCBCTTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEEHHHHHHHHHHHCC----------CCCB
T ss_pred             cCcHHHHhcC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEeHHHHHHHHHHhhccccc-ccchhcccC
Confidence            4578888865  6788999999999999999999999999995 47999999999998776533211000 000001111


Q ss_pred             hhhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHH
Q 014342          234 ISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCI  313 (426)
Q Consensus       234 i~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l  313 (426)
                      +.       .            .|.++++++.+++++.+|+..|.+++++++||+|   + |   +++|+||..||++++
T Consensus        80 v~-------~------------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd---~-g---~lvGiit~~dil~~~  133 (160)
T 2o16_A           80 LF-------E------------VMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVA---K-D---VLVGIITDSDFVTIA  133 (160)
T ss_dssp             HH-------H------------HSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEE---T-T---EEEEEECHHHHHHHH
T ss_pred             HH-------H------------HhcCCCeEECCCCCHHHHHHHHHHhCCCEEEEEE---C-C---EEEEEEEHHHHHHHH
Confidence            11       1            1467889999999999999999999999999995   2 6   799999999999987


Q ss_pred             Hhhc
Q 014342          314 CRHF  317 (426)
Q Consensus       314 ~~~~  317 (426)
                      ....
T Consensus       134 ~~~~  137 (160)
T 2o16_A          134 INLL  137 (160)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            7643

>4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable, cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus marinus}

Probab=99.52  E-value=1.3e-14  Score=155.73  Aligned_cols=82  Identities=17%  Similarity=0.152  Sum_probs=70.3

Q ss_pred             CCCcceEEEEEecC--CCceEEEEeccCCCCCC-CCCCCCCCCCCeEEEEEecCCceEEEEEEEcCeee--cCCCCCe--
Q 014342           16 VGSILVPVRFIWPN--GGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWR--HDENQPH--   88 (426)
Q Consensus        16 ~~~~~~~v~f~~~~--~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~L~~g~y~ykFiVDg~w~--~d~~~p~--   88 (426)
                      .....++|+|+++.  +|++|+|+||||||++. .+|.+.   +|.|++++.||||+|||||+|||+|.  +||++|.  
T Consensus        13 ~~~~~~~v~f~~~~~~~~~~v~~~G~Fn~w~~~~~~~~~~---~~~~~~~~~L~~g~~~y~f~vdg~~~~~~d~~~~~~~   89 (696)
T 4aee_A           13 GRKGRYIVKFTRHWPQYAKNIYLIGEFTSLYPGFVKLRKI---EEQGIVYLKLWPGEYGYGFQIDNDFENVLDPDNEEKK   89 (696)
T ss_dssp             TEEEEEEEEEEEECCTTCSCEEEEETTSCSSTTSCBCEEE---TTEEEEEEEECSEEEEEEEEETTCCSCCCCTTCCCEE
T ss_pred             CCCCcEEEEEEEECCCCCcEEEEEEecCCCCCCCcceEec---CCeEEEEEEcCCceEEEEEEECCEEeecCCCCCCccc
Confidence            45567788888776  68999999999999764 578764   79999999999999999999999999  8888873  


Q ss_pred             -eeCCCCCeeeEE
Q 014342           89 -VSGNYGVVNCVY  100 (426)
Q Consensus        89 -~~d~~G~~nn~~  100 (426)
                       +.|.+|..|++.
T Consensus        90 y~~~~~g~~n~~~  102 (696)
T 4aee_A           90 CVHTSFFPEYKKC  102 (696)
T ss_dssp             EEECSSCTTSEEE
T ss_pred             ccccCCcccccee
Confidence             568999999985

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=99.51  E-value=5.3e-14  Score=132.17  Aligned_cols=151  Identities=14%  Similarity=0.117  Sum_probs=105.9

Q ss_pred             hccccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCC-CCcEEEEeehHHHHHHHHHhccC-CC---CC--
Q 014342          152 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDF-KGRFVGVLSALDFILILRELGTN-GS---NL--  224 (426)
Q Consensus       152 l~~~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~-~~~~vGilT~~Dli~~l~~~~~~-~~---~~--  224 (426)
                      ....++.|+|.+  .++++.++.++.+|.++|.+++++++||+|++ .++++|+||..||+.++...... ..   ..  
T Consensus        10 ~~~~~v~diMt~--~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~~~~~LvGiIt~~dl~~~l~~~~~~~~~~~~~~~~   87 (250)
T 2d4z_A           10 KYNIQVGDIMVR--DVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPAAAAE   87 (250)
T ss_dssp             CSSCBTTSSSBS--SCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCCCC
T ss_pred             cCCCChHHhcCC--CCeEECCCCCHHHHHHHHHhcCCCEEEEEecCCCCeEEEEEEHHHHHHHHHHhhhhhhhhhhhhhc
Confidence            345689999976  68899999999999999999999999999964 36899999999999876543210 00   00  


Q ss_pred             -C---------------hhh---hc-------------------------------------------------------
Q 014342          225 -T---------------EEE---LE-------------------------------------------------------  230 (426)
Q Consensus       225 -~---------------~~~---l~-------------------------------------------------------  230 (426)
                       .               ...   +.                                                       
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (250)
T 2d4z_A           88 ADEEGRNGETGASFTGEAESSFAYIDQEDAEGQQREGLEAVKVQTEDPRPPSPVPAEEPTQTSGIYQKKQKGTGQVASRF  167 (250)
T ss_dssp             BCCC---------------------------------------------------------------------------C
T ss_pred             ccccccccccccccccCCcceeeeccccccccccccCccccCCcccCCccccccccccccccccccccccccccccCccc
Confidence             0               000   00                                                       


Q ss_pred             --ccch---hhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEec
Q 014342          231 --THTI---SAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLAS  305 (426)
Q Consensus       231 --~~~i---~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit  305 (426)
                        ..+.   ..|...   .+. ...+-....|...++++.++++|.++..+|.+.|++++||++    .|   +|+||||
T Consensus       168 ~~~i~~~~~~~~~~~---~l~-~~Vdl~~~~md~sP~tv~~~tsL~~v~~LF~~lglr~l~V~~----~G---rLVGIVT  236 (250)
T 2d4z_A          168 EEMLTLEEIYRWEQR---EKN-VVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS----MG---KLVGVVA  236 (250)
T ss_dssp             CSCCBHHHHHHHHHH---HTT-CBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEE----TT---EEEEEEE
T ss_pred             ccccChhhhhhHHHH---hcC-ceeccccccccCCCeEECCCCcHHHHHHHHHHhCCeEEEEEE----CC---EEEEEEE
Confidence              0000   011111   010 001000113567788999999999999999999999999995    36   8999999


Q ss_pred             HHhHHHHHHh
Q 014342          306 LSDILKCICR  315 (426)
Q Consensus       306 ~~dil~~l~~  315 (426)
                      ..||++++..
T Consensus       237 rkDl~kai~~  246 (250)
T 2d4z_A          237 LAEIQAAIEG  246 (250)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHHH
Confidence            9999998763

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=99.51  E-value=7e-14  Score=124.46  Aligned_cols=150  Identities=11%  Similarity=0.124  Sum_probs=106.2

Q ss_pred             HHhccccccccCCCCCc--EEEE--cCCccHHHHHHHHHHCCCCeeeeee-CCCCcEEEEeehHHHHHHHHHhccCCCCC
Q 014342          150 SFLSTHTVYELLPDSGK--VTAL--DVNLAVKQAFHVLYEQGLPMVPLWD-DFKGRFVGVLSALDFILILRELGTNGSNL  224 (426)
Q Consensus       150 ~~l~~~~~~d~~p~s~~--vi~l--~~~~sv~~A~~~l~~~~i~slPV~D-~~~~~~vGilT~~Dli~~l~~~~~~~~~~  224 (426)
                      .++...++.|+|.....  ++++  +++.++.+|+++|.+++++++||++ .++++++|+||..|++..+.........+
T Consensus         6 ~~~~~~~v~dim~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~~~~lvGiit~~dl~~~~~~~~~~~~~~   85 (185)
T 2j9l_A            6 EFAHKTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGV   85 (185)
T ss_dssp             ---CCCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCC
T ss_pred             hhhccCcHHHHhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEECCCCeEEEEEEHHHHHHHHHhhcccCCCc
Confidence            67888999999987633  6777  9999999999999999999999993 24579999999999988765422110000


Q ss_pred             Chhhhccc-c------hhhh-HHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCC
Q 014342          225 TEEELETH-T------ISAW-KVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGS  296 (426)
Q Consensus       225 ~~~~l~~~-~------i~~~-~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~  296 (426)
                      ........ .      .... .....            ..|.++++++.+++++.+|+..|.+++++++||++    +| 
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~v~------------~im~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd----~g-  148 (185)
T 2j9l_A           86 VSTSIIYFTEHSPPLPPYTPPTLKLR------------NILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH----NG-  148 (185)
T ss_dssp             CTTCEEECSSSCCCCCTTCCCCEECG------------GGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEE----TT-
T ss_pred             cccceeecccCCcccccccccCccHH------------HhhCcCCeEeCCCCCHHHHHHHHHhCCCcEEEEEE----CC-
Confidence            00000000 0      0000 00000            12456788999999999999999999999999995    36 


Q ss_pred             cceEEEEecHHhHHHHHHhhcc
Q 014342          297 CQEILYLASLSDILKCICRHFK  318 (426)
Q Consensus       297 ~~~lvGiit~~dil~~l~~~~~  318 (426)
                        +++|+||..||++++.....
T Consensus       149 --~~vGiit~~dll~~l~~~~~  168 (185)
T 2j9l_A          149 --RLLGIITKKDVLKHIAQMAN  168 (185)
T ss_dssp             --EEEEEEEHHHHHHHHHHHCC
T ss_pred             --EEEEEEEHHHHHHHHHHhhc
Confidence              79999999999999886644

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=99.51  E-value=2.5e-13  Score=123.90  Aligned_cols=132  Identities=15%  Similarity=0.202  Sum_probs=106.2

Q ss_pred             HHHHHHHHh--ccccccccCCCCCcEEEEcCCccHHHHHHHHHHC---CCCeeeeeeCCCCcEEEEeehHHHHHHHHHhc
Q 014342          144 SRDRISSFL--STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQ---GLPMVPLWDDFKGRFVGVLSALDFILILRELG  218 (426)
Q Consensus       144 ~~~~~~~~l--~~~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~---~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~  218 (426)
                      +++.+...|  .+.++.++|..  .+++++++.|+.+|++.|.++   ++..+||+|+ .++++|+||.+|++..     
T Consensus        41 e~~~i~~~l~~~~~~v~~iM~~--~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~-~~~lvGivt~~dll~~-----  112 (205)
T 3kxr_A           41 QRQRFELYDQYSENEIGRYTDH--QMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDE-ADKYLGTVRRYDIFKH-----  112 (205)
T ss_dssp             HHHHHHHHHHSCTTCGGGGCBC--CCCEEETTCBHHHHHHHHHHCCCTTCCEEEEECT-TCBEEEEEEHHHHTTS-----
T ss_pred             HHHHHHHHhCCCcchHHhhccC--ceEEECCCCcHHHHHHHHHhhCccCeeEEEEEcC-CCeEEEEEEHHHHHhC-----
Confidence            455555554  47789999976  688999999999999999998   8999999995 5799999999997521     


Q ss_pred             cCCCCCChhhhcccchhhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcc
Q 014342          219 TNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQ  298 (426)
Q Consensus       219 ~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~  298 (426)
                        ..        ..++..                   .|.++++++.+++++.+|++.|.+++++++||+|   +.|   
T Consensus       113 --~~--------~~~v~~-------------------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD---~~g---  157 (205)
T 3kxr_A          113 --EP--------HEPLIS-------------------LLSEDSRALTANTTLLDAAEAIEHSREIELPVID---DAG---  157 (205)
T ss_dssp             --CT--------TSBGGG-------------------GCCSSCCCEETTSCHHHHHHHHHTSSCSEEEEEC---TTS---
T ss_pred             --CC--------cchHHH-------------------HhcCCCeEECCCCCHHHHHHHHHhcCCCEEEEEc---CCC---
Confidence              00        011111                   2467788999999999999999999999999995   346   


Q ss_pred             eEEEEecHHhHHHHHHhhcc
Q 014342          299 EILYLASLSDILKCICRHFK  318 (426)
Q Consensus       299 ~lvGiit~~dil~~l~~~~~  318 (426)
                      +++|+||..||++.+.....
T Consensus       158 ~lvGiIT~~Dil~~i~~e~~  177 (205)
T 3kxr_A          158 ELIGRVTLRAATALVREHYE  177 (205)
T ss_dssp             BEEEEEEHHHHHHHHHHHHC
T ss_pred             eEEEEEEHHHHHHHHHHHHH
Confidence            79999999999999876543

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=99.50  E-value=1.5e-13  Score=119.05  Aligned_cols=137  Identities=19%  Similarity=0.209  Sum_probs=102.8

Q ss_pred             HhccccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhc
Q 014342          151 FLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELE  230 (426)
Q Consensus       151 ~l~~~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~  230 (426)
                      .|...++.|+|.....++++.++.|+.+|++.|.++++.++||+|+ +++++|+||..|++..+..   . .........
T Consensus         7 ~l~~~~v~~im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~-~~~~~Givt~~dl~~~~~~---~-~~~~~~~~~   81 (157)
T 2emq_A            7 EFMQMTVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDT-SYKLHGLISMTMMMDAILG---L-ERIEFERLE   81 (157)
T ss_dssp             ---CCBSTTTCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECT-TCCEEEEEEHHHHHHHSBC---S-SSBCGGGGG
T ss_pred             hHhhCcHHhhccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcC-CCCEEEEeeHHHHHHHHhc---c-cccchHHhc
Confidence            4567889999976557888999999999999999999999999995 4799999999998764321   0 000000111


Q ss_pred             ccchhhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHH
Q 014342          231 THTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDIL  310 (426)
Q Consensus       231 ~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil  310 (426)
                      ..++..                   .|.++++++.+++++.+|+..|.++++  +||++   ++|   +++|+||..||+
T Consensus        82 ~~~v~~-------------------~m~~~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd---~~g---~~~Giit~~dil  134 (157)
T 2emq_A           82 TMKVEE-------------------VMNRNIPRLRLDDSLMKAVGLIVNHPF--VCVEN---DDG---YFAGIFTRREVL  134 (157)
T ss_dssp             TCBGGG-------------------TCBCCCCEEETTSBHHHHHHHHHHSSE--EEEEC---SSS---SEEEEEEHHHHH
T ss_pred             CCcHHH-------------------HhCCCCceecCCCcHHHHHHHHhhCCE--EEEEc---CCC---eEEEEEEHHHHH
Confidence            111111                   246778899999999999999999987  99995   235   699999999999


Q ss_pred             HHHHhhccc
Q 014342          311 KCICRHFKH  319 (426)
Q Consensus       311 ~~l~~~~~~  319 (426)
                      +++......
T Consensus       135 ~~~~~~~~~  143 (157)
T 2emq_A          135 KQLNKQLHR  143 (157)
T ss_dssp             HHHHHTTCC
T ss_pred             HHHHHHhhc
Confidence            998866543

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=99.50  E-value=4.8e-14  Score=124.87  Aligned_cols=154  Identities=17%  Similarity=0.245  Sum_probs=102.2

Q ss_pred             cccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCC--CCCChh-hhc
Q 014342          154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNG--SNLTEE-ELE  230 (426)
Q Consensus       154 ~~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~--~~~~~~-~l~  230 (426)
                      ..++.|+|.....++++.++.|+.+|+++|.++++.++||+|+ +++++|+||..|++..+.......  ..+... ...
T Consensus         3 ~~~v~dim~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~-~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~   81 (180)
T 3sl7_A            3 GYTVGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDD-NWTLVGVVSDYDLLALDSISGRSQNDTNLFPDVDST   81 (180)
T ss_dssp             CCBHHHHSEEGGGCCCBCTTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEEHHHHTCC-------------------C
T ss_pred             ceeHHHhcCCCCCceeeCCCCcHHHHHHHHHHcCCCeEEEECC-CCeEEEEEEHHHHHhhhhhccccCCcccccccccch
Confidence            3567888877667889999999999999999999999999996 479999999999874321110000  000000 000


Q ss_pred             ccchhhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHH
Q 014342          231 THTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDIL  310 (426)
Q Consensus       231 ~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil  310 (426)
                      -..+...............    ...|.++++++.+++++.+|++.|.+++++++||+|   ++|   +++|+||..||+
T Consensus        82 ~~~~~~~~~~~~~~~~~~v----~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd---~~g---~~vGiit~~dil  151 (180)
T 3sl7_A           82 WKTFNELQKLISKTYGKVV----GDLMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVD---ADG---KLIGILTRGNVV  151 (180)
T ss_dssp             CCSHHHHHHHHHTTTTCBH----HHHSEESCCCEETTSBHHHHHHHHTTSTTCEEEEEC---TTC---BEEEEEEHHHHH
T ss_pred             hhhhHHHHHHHhccccccH----HHHhCCCceEeCCCCcHHHHHHHHHHcCCCEEEEEC---CCC---eEEEEEEHHHHH
Confidence            0000000000000000000    012456678899999999999999999999999995   346   799999999999


Q ss_pred             HHHHhhcc
Q 014342          311 KCICRHFK  318 (426)
Q Consensus       311 ~~l~~~~~  318 (426)
                      +++.....
T Consensus       152 ~~~~~~~~  159 (180)
T 3sl7_A          152 RAALQIKR  159 (180)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhh
Confidence            99887644

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=99.50  E-value=2.5e-13  Score=115.63  Aligned_cols=122  Identities=16%  Similarity=0.161  Sum_probs=98.4

Q ss_pred             ccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCC--cEEEEeehHHHHHHHHHhccCCCCCChhhhccc
Q 014342          155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKG--RFVGVLSALDFILILRELGTNGSNLTEEELETH  232 (426)
Q Consensus       155 ~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~--~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~  232 (426)
                      .++.|+|..  .++++.++.|+.+|++.|.++++..+||+|+ ++  +++|+||..|++..+.....    .      ..
T Consensus         5 ~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~~~~Givt~~dl~~~~~~~~~----~------~~   71 (141)
T 2rih_A            5 IRTSELLKR--PPVSLPETATIREVATELAKNRVGLAVLTAR-DNPKRPVAVVSERDILRAVAQRLD----L------DG   71 (141)
T ss_dssp             CBGGGGCCS--CCEEEETTCBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEEEEHHHHHHHHHTTCC----T------TS
T ss_pred             eEHHHHhcC--CCeEeCCCCcHHHHHHHHHHcCCCEEEEEcC-CCcceeEEEEEHHHHHHHHhcCCC----C------CC
Confidence            578899975  6888999999999999999999999999995 45  89999999999876542100    0      01


Q ss_pred             chhhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHH
Q 014342          233 TISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (426)
Q Consensus       233 ~i~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~  312 (426)
                      ++..                   .|.++++++.++ ++.+|++.|.+++++++||+|   ++|   +++|+||..||++.
T Consensus        72 ~v~~-------------------~m~~~~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd---~~g---~~~Giit~~dll~~  125 (141)
T 2rih_A           72 PAMP-------------------IANSPITVLDTD-PVHVAAEKMRRHNIRHVVVVN---KNG---ELVGVLSIRDLCFE  125 (141)
T ss_dssp             BSGG-------------------GCBCCCEEETTS-BHHHHHHHHHHHTCSEEEEEC---TTS---CEEEEEEHHHHHSC
T ss_pred             CHHH-------------------HcCCCCeEEcCC-CHHHHHHHHHHcCCeEEEEEc---CCC---cEEEEEEHHHHHHH
Confidence            1111                   246788999999 999999999999999999995   245   79999999999876


Q ss_pred             HHh
Q 014342          313 ICR  315 (426)
Q Consensus       313 l~~  315 (426)
                      +..
T Consensus       126 ~~~  128 (141)
T 2rih_A          126 RAI  128 (141)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            553

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.50  E-value=3.8e-13  Score=116.84  Aligned_cols=135  Identities=16%  Similarity=0.214  Sum_probs=101.3

Q ss_pred             hccccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCe-eeeeeCCCCcEEEEeehHHHHHHHHHh----ccCCCCCCh
Q 014342          152 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPM-VPLWDDFKGRFVGVLSALDFILILREL----GTNGSNLTE  226 (426)
Q Consensus       152 l~~~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~s-lPV~D~~~~~~vGilT~~Dli~~l~~~----~~~~~~~~~  226 (426)
                      +...++.|+|..  ++++++++.|+.+|+++|.++++.. +||+|++  +++|+||..|++..+...    ......+..
T Consensus        13 ~~~~~v~~im~~--~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~~--~~vGivt~~dl~~~~~~~~~~~~~~~~~~~~   88 (157)
T 1o50_A           13 MKVKDVCKLISL--KPTVVEEDTPIEEIVDRILEDPVTRTVYVARDN--KLVGMIPVMHLLKVSGFHFFGFIPKEELIRS   88 (157)
T ss_dssp             CBHHHHTTSSCC--CCEEECTTCBHHHHHHHHHHSTTCCEEEEEETT--EEEEEEEHHHHHHHHHHHHHCCCC-------
T ss_pred             hccccHhhcccC--CCceECCCCCHHHHHHHHHhCCCCccEEEEECC--EEEEEEEHHHHHHHHhhhHHhhhccHHHHHH
Confidence            455678899966  6889999999999999999999999 9999963  899999999998765421    000000000


Q ss_pred             --hhhcccchhhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEe
Q 014342          227 --EELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLA  304 (426)
Q Consensus       227 --~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGii  304 (426)
                        ......++.       .            .|.+ ++++.+++++.+|++.|.+++++++||+|   ++|   +++|+|
T Consensus        89 ~~~~~~~~~v~-------~------------im~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd---~~g---~~vGii  142 (157)
T 1o50_A           89 SMKRLIAKNAS-------E------------IMLD-PVYVHMDTPLEEALKLMIDNNIQEMPVVD---EKG---EIVGDL  142 (157)
T ss_dssp             CCCCCSSCBHH-------H------------HCBC-CCCBCTTSBHHHHHHHHHHHTCSEEEEEC---TTS---CEEEEE
T ss_pred             HHHHHcCCcHH-------H------------HcCC-CeEECCCCCHHHHHHHHHHCCCcEEEEEc---CCC---EEEEEE
Confidence              000011111       1            1456 88999999999999999999999999995   235   699999


Q ss_pred             cHHhHHHHHHhh
Q 014342          305 SLSDILKCICRH  316 (426)
Q Consensus       305 t~~dil~~l~~~  316 (426)
                      |..||++++...
T Consensus       143 t~~dll~~l~~~  154 (157)
T 1o50_A          143 NSLEILLALWKG  154 (157)
T ss_dssp             EHHHHHHHHHHS
T ss_pred             EHHHHHHHHHHh
Confidence            999999988654

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=99.49  E-value=1.5e-13  Score=116.42  Aligned_cols=129  Identities=20%  Similarity=0.299  Sum_probs=101.6

Q ss_pred             HhccccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhc
Q 014342          151 FLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELE  230 (426)
Q Consensus       151 ~l~~~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~  230 (426)
                      .|...++.|+|..  .+++++++.|+.+|++.|.++++.++||+|+ +++++|+||..|++..+.   ....      ..
T Consensus         3 ~l~~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~~Givt~~dl~~~~~---~~~~------~~   70 (138)
T 2yzi_A            3 MDMKAPIKVYMTK--KLLGVKPSTSVQEASRLMMEFDVGSLVVIND-DGNVVGFFTKSDIIRRVI---VPGL------PY   70 (138)
T ss_dssp             CCTTSBGGGTCBC--CCCEECTTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHTT---TTCC------CT
T ss_pred             chhhhhHHHHhcC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEeHHHHHHHHH---hcCC------cc
Confidence            3567889999975  6788999999999999999999999999995 479999999999863221   1100      00


Q ss_pred             ccchhhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHH
Q 014342          231 THTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDIL  310 (426)
Q Consensus       231 ~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil  310 (426)
                      ..++..                   .|.++++++.+++++.+|++.|.+++++++ |+|+   +|   +++|++|..||+
T Consensus        71 ~~~v~~-------------------~m~~~~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd~---~g---~~~Giit~~dil  124 (138)
T 2yzi_A           71 DIPVER-------------------IMTRNLITANVNTPLGEVLRKMAEHRIKHI-LIEE---EG---KIVGIFTLSDLL  124 (138)
T ss_dssp             TSBGGG-------------------TCBCSCCEEETTSBHHHHHHHHHHHTCSEE-EEEE---TT---EEEEEEEHHHHH
T ss_pred             cCCHHH-------------------HhhCCCeEECCCCcHHHHHHHHHhcCCCEE-EECC---CC---CEEEEEEHHHHH
Confidence            111111                   245678899999999999999999999999 9962   46   799999999999


Q ss_pred             HHHHhhc
Q 014342          311 KCICRHF  317 (426)
Q Consensus       311 ~~l~~~~  317 (426)
                      +++....
T Consensus       125 ~~~~~~~  131 (138)
T 2yzi_A          125 EASRRRL  131 (138)
T ss_dssp             HHHHCCS
T ss_pred             HHHHHHH
Confidence            9887543

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=99.49  E-value=6.9e-14  Score=120.49  Aligned_cols=121  Identities=12%  Similarity=0.242  Sum_probs=97.9

Q ss_pred             ccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccch
Q 014342          155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTI  234 (426)
Q Consensus       155 ~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i  234 (426)
                      .++.|+|.....+++++++.|+.+|+++|.++++..+||+|+ +++++|+||..|++..+....         .....++
T Consensus        28 ~~v~dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~-~~~~~Givt~~dl~~~~~~~~---------~~~~~~v   97 (149)
T 3k2v_A           28 LRVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDD-DMNIIGIFTDGDLRRVFDTGV---------DMRDASI   97 (149)
T ss_dssp             SBGGGTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECT-TCBEEEEEEHHHHHHHHCSSS---------CCTTCBH
T ss_pred             cCHHHHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECC-CCcEEEEecHHHHHHHHhcCC---------CcccCcH
Confidence            589999977557889999999999999999999999999995 479999999999987653210         0011122


Q ss_pred             hhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342          235 SAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (426)
Q Consensus       235 ~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~  311 (426)
                      ..+                   |.++++++.+++++.+|++.|.+++++++||+|+    +   +++|+||..||++
T Consensus        98 ~~~-------------------m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~----~---~~~Giit~~dil~  148 (149)
T 3k2v_A           98 ADV-------------------MTRGGIRIRPGTLAVDALNLMQSRHITCVLVADG----D---HLLGVVHMHDLLR  148 (149)
T ss_dssp             HHH-------------------SEESCCEECTTCBHHHHHHHHHHHTCSEEEEEET----T---EEEEEEEHHHHTC
T ss_pred             HHH-------------------cCCCCeEECCCCCHHHHHHHHHHcCCCEEEEecC----C---EEEEEEEHHHhhc
Confidence            222                   3566789999999999999999999999999962    3   5999999999874

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=99.48  E-value=1.1e-13  Score=116.81  Aligned_cols=125  Identities=18%  Similarity=0.255  Sum_probs=96.9

Q ss_pred             cccccCC-CCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccch
Q 014342          156 TVYELLP-DSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTI  234 (426)
Q Consensus       156 ~~~d~~p-~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i  234 (426)
                      ++.|+|. +...+++++++.|+.+|++.|.++++..+||+|  +++++|+||..|++..+..   .+.     .....++
T Consensus         7 ~v~~im~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd--~~~~~Givt~~dl~~~~~~---~~~-----~~~~~~v   76 (135)
T 2rc3_A            7 TVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMK--DEKLVGILTERDFSRKSYL---LDK-----PVKDTQV   76 (135)
T ss_dssp             BHHHHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHGGG---SSS-----CGGGSBG
T ss_pred             eHHHHHhcCCCCcEEECCCCcHHHHHHHHHhcCCCEEEEEE--CCEEEEEEehHHHHHHHHH---cCC-----CcccCCH
Confidence            6777775 224678899999999999999999999999998  3799999999998753221   100     0011111


Q ss_pred             hhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHH
Q 014342          235 SAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCIC  314 (426)
Q Consensus       235 ~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~  314 (426)
                      ..                   .|.++++++.+++++.+|++.|.+++++++||+|    +|   +++|+||..||++++.
T Consensus        77 ~~-------------------~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd----~g---~~~Giit~~dll~~~~  130 (135)
T 2rc3_A           77 KE-------------------IMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLD----DG---KVIGLLSIGDLVKDAI  130 (135)
T ss_dssp             GG-------------------TSBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE----TT---EEEEEEEHHHHHHHHH
T ss_pred             HH-------------------hccCCCeEECCCCcHHHHHHHHHHhCCCEEEEEe----CC---EEEEEEEHHHHHHHHH
Confidence            11                   2466788999999999999999999999999995    25   7999999999999876


Q ss_pred             hh
Q 014342          315 RH  316 (426)
Q Consensus       315 ~~  316 (426)
                      ..
T Consensus       131 ~~  132 (135)
T 2rc3_A          131 SQ  132 (135)
T ss_dssp             C-
T ss_pred             hc
Confidence            43

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=99.47  E-value=1.8e-13  Score=119.15  Aligned_cols=135  Identities=18%  Similarity=0.216  Sum_probs=102.2

Q ss_pred             hccccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcc
Q 014342          152 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELET  231 (426)
Q Consensus       152 l~~~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~  231 (426)
                      |...++.|+|.....+++++++.++.+|+++|.++++.++||+|+ +++++|+||..|++..+....    .+.......
T Consensus        11 l~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~-~~~lvGivt~~dl~~~~~~~~----~~~~~~~~~   85 (159)
T 1yav_A           11 LLEATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDP-SYRLHGLIGTNMIMNSIFGLE----RIEFEKLDQ   85 (159)
T ss_dssp             CTTCBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECT-TCBEEEEEEHHHHHHHHBCSS----SBCGGGTTT
T ss_pred             HhHhhHHHHhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECC-CCCEEEEeEHHHHHHHhhhhc----ccchhhhcc
Confidence            456788898876446788999999999999999999999999995 479999999999886553110    000011111


Q ss_pred             cchhhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342          232 HTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (426)
Q Consensus       232 ~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~  311 (426)
                      .++..       +            |.++++++.+++++.+|++.|.++++  +||+|   ++|   +++|+||.+||++
T Consensus        86 ~~v~~-------~------------m~~~~~~v~~~~~l~~a~~~m~~~~~--lpVvd---~~g---~~vGiit~~dil~  138 (159)
T 1yav_A           86 ITVEE-------V------------MLTDIPRLHINDPIMKGFGMVINNGF--VCVEN---DEQ---VFEGIFTRRVVLK  138 (159)
T ss_dssp             SBHHH-------H------------SBCSCCEEETTSBHHHHHHHTTTCSE--EEEEC---TTC---BEEEEEEHHHHHH
T ss_pred             CCHHH-------h------------cCCCCceEcCCCCHHHHHHHHHhCCE--EEEEe---CCC---eEEEEEEHHHHHH
Confidence            11111       1            45678899999999999999999876  99995   246   7999999999999


Q ss_pred             HHHhhcc
Q 014342          312 CICRHFK  318 (426)
Q Consensus       312 ~l~~~~~  318 (426)
                      ++.....
T Consensus       139 ~~~~~~~  145 (159)
T 1yav_A          139 ELNKHIR  145 (159)
T ss_dssp             HHHHHC-
T ss_pred             HHHHHHH
Confidence            9876654

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=99.47  E-value=1.6e-13  Score=119.55  Aligned_cols=139  Identities=11%  Similarity=0.101  Sum_probs=102.0

Q ss_pred             hccccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeC-CCCcEEEEeehHHHHHHHHHhccCCCCCChhhhc
Q 014342          152 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDD-FKGRFVGVLSALDFILILRELGTNGSNLTEEELE  230 (426)
Q Consensus       152 l~~~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~-~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~  230 (426)
                      +...++.|+|..  .+++++.+.++.+|+++|.+++++++||+|+ ++++++|+||..|++..+......  ..   ...
T Consensus        10 ~~~~~v~dim~~--~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~~~~~~~Givt~~dl~~~~~~~~~~--~~---~~~   82 (164)
T 2pfi_A           10 SHHVRVEHFMNH--SITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQAEPPS--RA---PGH   82 (164)
T ss_dssp             CCSCBHHHHCBC--CCCCEETTCBHHHHHHHHHTCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHC------------CC
T ss_pred             ccCCCHHHHcCC--CCeEECCCCcHHHHHHHHHhCCCCceeEEecCCCCEEEEEEEHHHHHHHHHhhccc--cC---Ccc
Confidence            446778899976  6778899999999999999999999999996 357999999999998766421110  00   001


Q ss_pred             ccchhhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHH
Q 014342          231 THTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDIL  310 (426)
Q Consensus       231 ~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil  310 (426)
                      ...+..+....  .           .....++++.+++++.+|++.|.+++++++||++    +|   +++|+||..||+
T Consensus        83 ~~~v~~~m~~~--~-----------~~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd----~g---~l~Giit~~dil  142 (164)
T 2pfi_A           83 QQCLQDILARG--C-----------PTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTS----RG---RAVGCVSWVEMK  142 (164)
T ss_dssp             CCBHHHHHHTT--C-----------CCBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEE----TT---EEEEEEEHHHHH
T ss_pred             cchhhhhhccc--c-----------cccCCceEECCCCcHHHHHHHHHHhCCCEEEEEE----CC---EEEEEEEHHHHH
Confidence            11222221110  0           0011267899999999999999999999999995    25   799999999999


Q ss_pred             HHHHhhc
Q 014342          311 KCICRHF  317 (426)
Q Consensus       311 ~~l~~~~  317 (426)
                      +++....
T Consensus       143 ~~~~~~~  149 (164)
T 2pfi_A          143 KAISNLT  149 (164)
T ss_dssp             HHHHHHH
T ss_pred             HHHHhhh
Confidence            9987654

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=99.47  E-value=1.2e-13  Score=119.91  Aligned_cols=128  Identities=16%  Similarity=0.270  Sum_probs=100.3

Q ss_pred             ccccccCCCC----CcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhc
Q 014342          155 HTVYELLPDS----GKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELE  230 (426)
Q Consensus       155 ~~~~d~~p~s----~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~  230 (426)
                      .++.|+|...    ..+++++++.|+.+|+++|.++++..+||.|  +++++|+||..|++..+......        ..
T Consensus         7 ~~v~dim~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~~--~~~~~Givt~~dl~~~~~~~~~~--------~~   76 (157)
T 4fry_A            7 TTVAQILKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVD--GDDIAGIVTERDYARKVVLQERS--------SK   76 (157)
T ss_dssp             CBHHHHHHHSTTTTCCCCEEETTSBHHHHHHHHHHHTCSEEEEES--SSSEEEEEEHHHHHHHSGGGTCC--------SS
T ss_pred             HHHHHHHhcccccCCCCeEECCCCcHHHHHHHHHHcCCCEEEEee--CCEEEEEEEHHHHHHHHHhccCC--------cc
Confidence            3566777544    5788999999999999999999999999954  57999999999988765321110        01


Q ss_pred             ccchhhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHH
Q 014342          231 THTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDIL  310 (426)
Q Consensus       231 ~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil  310 (426)
                      ..++..+                   |.++++++.+++++.+|++.|.+++++++||+|    +|   +++|+||..||+
T Consensus        77 ~~~v~~~-------------------m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd----~g---~~~Giit~~dil  130 (157)
T 4fry_A           77 ATRVEEI-------------------MTAKVRYVEPSQSTDECMALMTEHRMRHLPVLD----GG---KLIGLISIGDLV  130 (157)
T ss_dssp             SCBHHHH-------------------SBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEE----TT---EEEEEEEHHHHH
T ss_pred             ccCHHHH-------------------cCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEE----CC---EEEEEEEHHHHH
Confidence            1112221                   356778999999999999999999999999995    25   799999999999


Q ss_pred             HHHHhhcc
Q 014342          311 KCICRHFK  318 (426)
Q Consensus       311 ~~l~~~~~  318 (426)
                      +++.....
T Consensus       131 ~~l~~~~~  138 (157)
T 4fry_A          131 KSVIADQQ  138 (157)
T ss_dssp             HHHHTTCC
T ss_pred             HHHHHHHH
Confidence            99886543

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=99.45  E-value=7.6e-14  Score=117.48  Aligned_cols=126  Identities=17%  Similarity=0.259  Sum_probs=95.9

Q ss_pred             HhccccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHH-HHHHhccCCCCCChhhh
Q 014342          151 FLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFIL-ILRELGTNGSNLTEEEL  229 (426)
Q Consensus       151 ~l~~~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~-~l~~~~~~~~~~~~~~l  229 (426)
                      .+...++.|+|..  +++++.++.|+.+|+++|.++++..+||+|+ +++++|+||..|++. .+....         ..
T Consensus         4 ~~~~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~~Givt~~dl~~~~~~~~~---------~~   71 (133)
T 1y5h_A            4 PFTMTTARDIMNA--GVTCVGEHETLTAAAQYMREHDIGALPICGD-DDRLHGMLTDRDIVIKGLAAGL---------DP   71 (133)
T ss_dssp             ----CCHHHHSEE--TCCCEETTSBHHHHHHHHHHHTCSEEEEECG-GGBEEEEEEHHHHHHTTGGGTC---------CT
T ss_pred             hhhhcCHHHHhcC--CceEeCCCCCHHHHHHHHHHhCCCeEEEECC-CCeEEEEEeHHHHHHHHHhcCC---------Cc
Confidence            3445677888865  5778899999999999999999999999985 479999999999863 332100         00


Q ss_pred             cccchhhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhH
Q 014342          230 ETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDI  309 (426)
Q Consensus       230 ~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~di  309 (426)
                      ...++..+                   |.++++++.+++++.+|++.|.+++++++||++   + |   +++|++|..||
T Consensus        72 ~~~~v~~~-------------------m~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd---~-g---~~~Giit~~di  125 (133)
T 1y5h_A           72 NTATAGEL-------------------ARDSIYYVDANASIQEMLNVMEEHQVRRVPVIS---E-H---RLVGIVTEADI  125 (133)
T ss_dssp             TTSBHHHH-------------------HTTCCCCEETTCCHHHHHHHHHHHTCSEEEEEE---T-T---EEEEEEEHHHH
T ss_pred             cccCHHHH-------------------hcCCCEEECCCCCHHHHHHHHHHcCCCEEEEEE---C-C---EEEEEEEHHHH
Confidence            11122222                   346778899999999999999999999999996   2 5   79999999999


Q ss_pred             HHHHH
Q 014342          310 LKCIC  314 (426)
Q Consensus       310 l~~l~  314 (426)
                      ++++.
T Consensus       126 l~~l~  130 (133)
T 1y5h_A          126 ARHLP  130 (133)
T ss_dssp             HHTCC
T ss_pred             HHHHH
Confidence            98653

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=99.45  E-value=2.3e-13  Score=130.56  Aligned_cols=114  Identities=14%  Similarity=0.189  Sum_probs=96.8

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhC-----CCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccc
Q 014342          256 PCPRPLVQAGPYDSLKEVALKILQN-----KVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQP  330 (426)
Q Consensus       256 ~~~~~~v~v~~~~sl~~a~~~m~~~-----~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~  330 (426)
                      .|++.++++.+++++.+|++.|.++     +++++||+|+   +|   +++|+||..|+++..             ...+
T Consensus       142 iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~---~~---~lvGivt~~dll~~~-------------~~~~  202 (286)
T 2oux_A          142 IMTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQ---EN---HLVGVISLRDLIVND-------------DDTL  202 (286)
T ss_dssp             HCBSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECT---TC---BEEEEEEHHHHTTSC-------------TTSB
T ss_pred             hCCCCceEECCCCcHHHHHHHHHHcccCccceeEEEEEcC---CC---eEEEEEEHHHHHcCC-------------CCCc
Confidence            3678899999999999999999987     8899999952   35   799999999987530             1334


Q ss_pred             cccccccccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHhcc
Q 014342          331 VSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDK  400 (426)
Q Consensus       331 v~~l~i~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~~~  400 (426)
                      +.++|.            ++++++++++++.+|+++|.+++++++||||++|+++|+||..||+..+...
T Consensus       203 v~~im~------------~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIT~~Dil~~i~~e  260 (286)
T 2oux_A          203 IADILN------------ERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVIDDE  260 (286)
T ss_dssp             HHHHSB------------SCCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHH
T ss_pred             HHHHcC------------CCCeeecCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHHHHH
Confidence            555442            4778899999999999999999999999999999999999999999987654

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=99.44  E-value=4.9e-13  Score=113.73  Aligned_cols=132  Identities=16%  Similarity=0.212  Sum_probs=96.0

Q ss_pred             cccccc---cCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhc
Q 014342          154 THTVYE---LLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELE  230 (426)
Q Consensus       154 ~~~~~d---~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~  230 (426)
                      +.++.+   +|.  .++++++++.++.+|+++|.++++..+||+|+ +++++|++|..|++..+....  .      ...
T Consensus         7 ~~~v~~~~~~~~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~~Givt~~dl~~~~~~~~--~------~~~   75 (144)
T 2nyc_A            7 KIPIGDLNIITQ--DNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDE-NGYLINVYEAYDVLGLIKGGI--Y------NDL   75 (144)
T ss_dssp             GSBGGGSSCCBC--SSCCCBCTTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEEHHHHHHHHHTC------------C
T ss_pred             hcchhhcCCCCC--CCceEECCCCcHHHHHHHHHHcCcceeeEEcC-CCcEEEEEcHHHHHHHhcccc--c------ccC
Confidence            355666   444  46888999999999999999999999999995 479999999999987654210  0      001


Q ss_pred             ccchhhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHH
Q 014342          231 THTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDIL  310 (426)
Q Consensus       231 ~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil  310 (426)
                      ..++..+......             ...+++++.+++++.+|++.|.+++++++||+|   ++|   +++|+||..||+
T Consensus        76 ~~~v~~~m~~~~~-------------~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd---~~g---~~~Giit~~dil  136 (144)
T 2nyc_A           76 SLSVGEALMRRSD-------------DFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVD---DVG---RLVGVLTLSDIL  136 (144)
T ss_dssp             CSBHHHHHHHCC-------------------CEECTTSBHHHHHHHHHHHTCSEEEEEC---TTS---BEEEEEEHHHHH
T ss_pred             CccHHHHHhcCcc-------------ccCCCeEECCCCcHHHHHHHHHHCCCCEEEEEC---CCC---CEEEEEEHHHHH
Confidence            1122332110000             002578999999999999999999999999995   236   799999999999


Q ss_pred             HHHHh
Q 014342          311 KCICR  315 (426)
Q Consensus       311 ~~l~~  315 (426)
                      +.+..
T Consensus       137 ~~l~~  141 (144)
T 2nyc_A          137 KYILL  141 (144)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            98764

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=99.43  E-value=6.5e-13  Score=126.81  Aligned_cols=115  Identities=17%  Similarity=0.254  Sum_probs=95.1

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhC-----CCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccc
Q 014342          256 PCPRPLVQAGPYDSLKEVALKILQN-----KVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQP  330 (426)
Q Consensus       256 ~~~~~~v~v~~~~sl~~a~~~m~~~-----~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~  330 (426)
                      .|++.++++.+++++.+|++.|.++     ++.++||+++   .+   +++|+||.+|++..     .        ...+
T Consensus       140 iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~---~~---~lvGivt~~dll~~-----~--------~~~~  200 (278)
T 2yvy_A          140 LMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDE---KG---RLKGVLSLRDLIVA-----D--------PRTR  200 (278)
T ss_dssp             TCBSCCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECT---TC---BEEEEEEHHHHHHS-----C--------TTCB
T ss_pred             hcCCCceEECCCCcHHHHHHHHHHccCCccceeEEEEECC---CC---CEEEEEEHHHHhcC-----C--------CCCc
Confidence            5778899999999999999999987     7899999952   35   79999999999863     0        1234


Q ss_pred             cccccccccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHhccc
Q 014342          331 VSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKA  401 (426)
Q Consensus       331 v~~l~i~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~~~~  401 (426)
                      +.++|            .++++++++++++.+|+++|.+++++.+||||++|+++|+||..||+..+....
T Consensus       201 v~~im------------~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivT~~Dil~~i~~e~  259 (278)
T 2yvy_A          201 VAEIM------------NPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEAEA  259 (278)
T ss_dssp             STTTS------------BSSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHC----
T ss_pred             HHHHh------------CCCCeEEeCCCCHHHHHHHHHhcCCCEEEEEeCCCeEEEEEEHHHHHHHHHHHh
Confidence            45444            247788999999999999999999999999999999999999999998766543

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=99.41  E-value=5e-13  Score=138.99  Aligned_cols=120  Identities=13%  Similarity=0.147  Sum_probs=100.0

Q ss_pred             CCCCCceEeCCC-CCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccc
Q 014342          256 PCPRPLVQAGPY-DSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSI  334 (426)
Q Consensus       256 ~~~~~~v~v~~~-~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l  334 (426)
                      .|+++++++.++ +++.+|+++|.+++++++||+|+  +++   +++|+||.+||++.+.....       ....+|.++
T Consensus       389 iM~~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~--~~g---~lvGiVt~~Dll~~l~~~~~-------~~~~~V~~i  456 (527)
T 3pc3_A          389 LELPAPPVILKSDATVGEAIALMKKHRVDQLPVVDQ--DDG---SVLGVVGQETLITQIVSMNR-------QQSDPAIKA  456 (527)
T ss_dssp             GCCCCCSCCEETTCBHHHHHHHHHHHTCSEEEEECT--TTC---CEEEEEEHHHHHHHHHHHCC-------CTTSBGGGG
T ss_pred             hCcCCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEEC--CCC---EEEEEEEHHHHHHHHHhccC-------cCCCcHHHH
Confidence            467889999999 99999999999999999999951  235   69999999999998875422       124556665


Q ss_pred             cccccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCC----CcEEEEEeHHHHHHHHhccc
Q 014342          335 QLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN----DSLLDIYSRSDITALAKDKA  401 (426)
Q Consensus       335 ~i~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~----g~lvGiis~~DI~~~~~~~~  401 (426)
                      |.            ++++++.+++++.+|+++|.++++  +||||++    |+++|+||+.||++.+.+..
T Consensus       457 m~------------~~~~~v~~~~~l~~a~~~m~~~~~--~pVVd~~~~~~g~lvGIVT~~Dll~~l~~~~  513 (527)
T 3pc3_A          457 LN------------KRVIRLNESEILGKLARVLEVDPS--VLILGKNPAGKVELKALATKLDVTTFIAAGK  513 (527)
T ss_dssp             EE------------TTCCEEETTSBHHHHHHHHTTCSE--EEEEEECSSSCEEEEEEEEHHHHHHHHHTCC
T ss_pred             hc------------CCCeEECCCCcHHHHHHHHhhCCE--EEEEeCCcccCCeEEEEEEHHHHHHHHHhcc
Confidence            52            578899999999999999987776  7999984    99999999999999887654

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=99.41  E-value=6.1e-13  Score=118.83  Aligned_cols=125  Identities=19%  Similarity=0.279  Sum_probs=98.8

Q ss_pred             ccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccch
Q 014342          155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTI  234 (426)
Q Consensus       155 ~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i  234 (426)
                      .++.|+|.+  .+++++++.|+.+|+++|.++++.++||+|++ ++++|++|..|++..+.....        .....++
T Consensus         9 ~~v~~im~~--~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~~-g~~vGivt~~dl~~~~~~~~~--------~~~~~~v   77 (184)
T 1pvm_A            9 MRVEKIMNS--NFKTVNWNTTVFDAVKIMNENHLYGLVVKDDN-GNDVGLLSERSIIKRFIPRNK--------KPDEVPI   77 (184)
T ss_dssp             CBGGGTSBT--TCCEEETTCBHHHHHHHHHHHTCCEEEEECTT-SCEEEEEEHHHHHHHTGGGCC--------CGGGSBG
T ss_pred             cCHHHhcCC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEcCC-CcEEEEEeHHHHHHHHhhccc--------CcccCCH
Confidence            678899964  68889999999999999999999999999854 799999999998765431100        0001111


Q ss_pred             hhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHH
Q 014342          235 SAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCIC  314 (426)
Q Consensus       235 ~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~  314 (426)
                      ..                   .|.++++++.+++++.+|++.|.+++++++||+|   ++|   +++|+||..||++++.
T Consensus        78 ~~-------------------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd---~~g---~~~Givt~~dll~~~~  132 (184)
T 1pvm_A           78 RL-------------------VMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVD---DPG---RVVGIVTLTDLSRYLS  132 (184)
T ss_dssp             GG-------------------TSBSSCCEEETTCBHHHHHHHHHHHTCSEEEEEC---TTC---CEEEEEEHHHHTTTSC
T ss_pred             HH-------------------HhCCCCcEECCCCCHHHHHHHHHHcCCcEEEEEc---CCC---eEEEEEEHHHHHHHHH
Confidence            11                   2466788999999999999999999999999995   235   6999999999998765


Q ss_pred             h
Q 014342          315 R  315 (426)
Q Consensus       315 ~  315 (426)
                      .
T Consensus       133 ~  133 (184)
T 1pvm_A          133 R  133 (184)
T ss_dssp             H
T ss_pred             h
Confidence            4

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=99.31  E-value=8.1e-12  Score=127.97  Aligned_cols=114  Identities=16%  Similarity=0.233  Sum_probs=96.6

Q ss_pred             CCCCCCceEeCCCCCHHHHHHHHHhC-----CCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccc
Q 014342          255 RPCPRPLVQAGPYDSLKEVALKILQN-----KVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQ  329 (426)
Q Consensus       255 ~~~~~~~v~v~~~~sl~~a~~~m~~~-----~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~  329 (426)
                      ..|+++++++.+++++.+|++.|.++     +++++||+|+   ++   +++|++|.+|++..     .        .+.
T Consensus       159 ~iM~~~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~---~~---~lvGiVt~~Dll~~-----~--------~~~  219 (473)
T 2zy9_A          159 GLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDE---KG---RLKGVLSLRDLIVA-----D--------PRT  219 (473)
T ss_dssp             TTCBSCEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECT---TS---BEEEEEEHHHHHHS-----C--------TTS
T ss_pred             HhCCCCceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECC---CC---cEEEEEEHHHHhcC-----C--------CCC
Confidence            35788999999999999999999986     5899999952   35   79999999999862     0        134


Q ss_pred             ccccccccccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHhc
Q 014342          330 PVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  399 (426)
Q Consensus       330 ~v~~l~i~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~~  399 (426)
                      +++++|.            ++++++++++++.+|+++|.++++..+||||++|+++|+||..||++.+..
T Consensus       220 ~v~dim~------------~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVDe~g~lvGiIT~~Dil~~i~~  277 (473)
T 2zy9_A          220 RVAEIMN------------PKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEA  277 (473)
T ss_dssp             BGGGTSB------------SSCCCEESSSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHH
T ss_pred             cHHHHhC------------CCCeEEeCCCcHHHHHHHHHhcCCcEEEEEcCCCEEEEEEehHhhHHHHHH
Confidence            5555552            477899999999999999999999999999999999999999999987654

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=99.31  E-value=9.6e-12  Score=119.22  Aligned_cols=130  Identities=22%  Similarity=0.296  Sum_probs=103.5

Q ss_pred             HHHHHHHhc--cccccccCCCCCcEEEEcCCccHHHHHHHHHHC-----CCCeeeeeeCCCCcEEEEeehHHHHHHHHHh
Q 014342          145 RDRISSFLS--THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQ-----GLPMVPLWDDFKGRFVGVLSALDFILILREL  217 (426)
Q Consensus       145 ~~~~~~~l~--~~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~-----~i~slPV~D~~~~~~vGilT~~Dli~~l~~~  217 (426)
                      +..+.+.+.  ..++.++|..  .++++.++.++.+|++.|.++     ++..+||+|+ +++++|+||..|++..    
T Consensus       125 ~~~i~~ll~~~~~~v~~iM~~--~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~-~~~lvGivt~~dll~~----  197 (286)
T 2oux_A          125 AGEIKELLHYEDETAGAIMTT--EFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQ-ENHLVGVISLRDLIVN----  197 (286)
T ss_dssp             HHHHHHHTTSCTTBHHHHCBS--CCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECT-TCBEEEEEEHHHHTTS----
T ss_pred             HHHHHHHhcCChHHHHHhCCC--CceEECCCCcHHHHHHHHHHcccCccceeEEEEEcC-CCeEEEEEEHHHHHcC----
Confidence            444555553  5678899965  688999999999999999998     8888999996 4799999999997531    


Q ss_pred             ccCCCCCChhhhcccchhhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCc
Q 014342          218 GTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSC  297 (426)
Q Consensus       218 ~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~  297 (426)
                        .         ...++..+                   |.++++++.+++++.+|++.|.+++++++||+|   +.|  
T Consensus       198 --~---------~~~~v~~i-------------------m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd---~~g--  242 (286)
T 2oux_A          198 --D---------DDTLIADI-------------------LNERVISVHVGDDQEDVAQTIRDYDFLAVPVTD---YDD--  242 (286)
T ss_dssp             --C---------TTSBHHHH-------------------SBSCCCCEETTSBHHHHHHHHHHHTCSEEEEEC---TTC--
T ss_pred             --C---------CCCcHHHH-------------------cCCCCeeecCCCCHHHHHHHHHHcCCcEEEEEc---CCC--
Confidence              0         01112221                   456788999999999999999999999999995   346  


Q ss_pred             ceEEEEecHHhHHHHHHhhc
Q 014342          298 QEILYLASLSDILKCICRHF  317 (426)
Q Consensus       298 ~~lvGiit~~dil~~l~~~~  317 (426)
                       +++|+||..||++.+....
T Consensus       243 -~lvGiIT~~Dil~~i~~e~  261 (286)
T 2oux_A          243 -HLLGIVTVDDIIDVIDDEA  261 (286)
T ss_dssp             -BEEEEEEHHHHHHHHHHHH
T ss_pred             -eEEEEEEHHHHHHHHHHHh
Confidence             7999999999999887653

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=99.28  E-value=1.2e-11  Score=127.71  Aligned_cols=115  Identities=13%  Similarity=0.188  Sum_probs=96.9

Q ss_pred             CCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccccc
Q 014342          257 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL  336 (426)
Q Consensus       257 ~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i  336 (426)
                      |..+++++.+++++.+++++|.+++++++||+++. .++   +++|+||.+|++.      .      ...+.++.++|.
T Consensus       119 m~~d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g-~~~---~lvGiVt~rDl~~------~------~~~~~~V~~vM~  182 (511)
T 3usb_A          119 VISDPFFLTPEHQVYDAEHLMGKYRISGVPVVNNL-DER---KLVGIITNRDMRF------I------QDYSIKISDVMT  182 (511)
T ss_dssp             SSSSCCCBCTTSBHHHHHHHHHHHCCSEEEEESCT-TTC---BEEEEEEHHHHTT------C------CCSSSBHHHHCC
T ss_pred             cccCCEEECCCCCHHHHHHHHHHcCCcEEEEEecC-CCC---EEEEEEEehHhhh------h------ccCCCcHHHhcc
Confidence            46678899999999999999999999999999521 135   7999999999853      0      112455666553


Q ss_pred             cccccccCCCCCC-CeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHhc
Q 014342          337 GTWVPRIGEANGR-PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  399 (426)
Q Consensus       337 ~~~~~~~~~~~~~-~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~~  399 (426)
                                  + +++++++++++.+|+++|.+++++.+||||++|+++|+||+.||++.+..
T Consensus       183 ------------~~~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe~g~l~GiIT~~Dil~~~~~  234 (511)
T 3usb_A          183 ------------KEQLITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLITIKDIEKVIEF  234 (511)
T ss_dssp             ------------CCCCCCEETTCCHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHC
T ss_pred             ------------cCCCEEECCCCCHHHHHHHHHHcCCCEEEEEeCCCCEeeeccHHHHHHhhhc
Confidence                        3 78899999999999999999999999999999999999999999998765

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=99.28  E-value=9.1e-12  Score=129.44  Aligned_cols=131  Identities=15%  Similarity=0.152  Sum_probs=101.5

Q ss_pred             hccccccccCCCCCcEEEEcCC-ccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhc
Q 014342          152 LSTHTVYELLPDSGKVTALDVN-LAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELE  230 (426)
Q Consensus       152 l~~~~~~d~~p~s~~vi~l~~~-~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~  230 (426)
                      +...++.|+|.+  .+++++++ .|+.+|+++|.++++.++||+|.++++++||||..|++..+......         .
T Consensus       381 l~~~~V~diM~~--~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~~g~lvGiVt~~Dll~~l~~~~~~---------~  449 (527)
T 3pc3_A          381 WWSLAIAELELP--APPVILKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVSMNRQ---------Q  449 (527)
T ss_dssp             TTTSBGGGGCCC--CCSCCEETTCBHHHHHHHHHHHTCSEEEEECTTTCCEEEEEEHHHHHHHHHHHCCC---------T
T ss_pred             ccCCcHHHhCcC--CCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECCCCEEEEEEEHHHHHHHHHhccCc---------C
Confidence            345789999975  67888889 99999999999999999999993357999999999998776532110         0


Q ss_pred             ccchhhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCC-CCCCcceEEEEecHHhH
Q 014342          231 THTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTG-PAGSCQEILYLASLSDI  309 (426)
Q Consensus       231 ~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~-~~g~~~~lvGiit~~di  309 (426)
                      ..++..                   .|.++++++.+++++.+++++|.++++  +||+|++. ..|   +++||||..||
T Consensus       450 ~~~V~~-------------------im~~~~~~v~~~~~l~~a~~~m~~~~~--~pVVd~~~~~~g---~lvGIVT~~Dl  505 (527)
T 3pc3_A          450 SDPAIK-------------------ALNKRVIRLNESEILGKLARVLEVDPS--VLILGKNPAGKV---ELKALATKLDV  505 (527)
T ss_dssp             TSBGGG-------------------GEETTCCEEETTSBHHHHHHHHTTCSE--EEEEEECSSSCE---EEEEEEEHHHH
T ss_pred             CCcHHH-------------------HhcCCCeEECCCCcHHHHHHHHhhCCE--EEEEeCCcccCC---eEEEEEEHHHH
Confidence            111111                   246788999999999999999977664  69996421 025   79999999999


Q ss_pred             HHHHHhhc
Q 014342          310 LKCICRHF  317 (426)
Q Consensus       310 l~~l~~~~  317 (426)
                      ++++..+.
T Consensus       506 l~~l~~~~  513 (527)
T 3pc3_A          506 TTFIAAGK  513 (527)
T ss_dssp             HHHHHTCC
T ss_pred             HHHHHhcc
Confidence            99998654

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=99.26  E-value=1.8e-11  Score=116.80  Aligned_cols=121  Identities=18%  Similarity=0.306  Sum_probs=97.5

Q ss_pred             ccccccccCCCCCcEEEEcCCccHHHHHHHHHHC-----CCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChh
Q 014342          153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQ-----GLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEE  227 (426)
Q Consensus       153 ~~~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~-----~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~  227 (426)
                      ...++.++|..  .++++.++.++.+|++.|.++     ++..+||+|+ .++++|+||..|++..     .  .     
T Consensus       133 ~~~~v~~iM~~--~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~-~~~lvGivt~~dll~~-----~--~-----  197 (278)
T 2yvy_A          133 EEDEAGGLMTP--EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDE-KGRLKGVLSLRDLIVA-----D--P-----  197 (278)
T ss_dssp             CTTBGGGTCBS--CCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECT-TCBEEEEEEHHHHHHS-----C--T-----
T ss_pred             CcchHHhhcCC--CceEECCCCcHHHHHHHHHHccCCccceeEEEEECC-CCCEEEEEEHHHHhcC-----C--C-----
Confidence            35789999975  688999999999999999997     7999999996 4799999999998632     0  0     


Q ss_pred             hhcccchhhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHH
Q 014342          228 ELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLS  307 (426)
Q Consensus       228 ~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~  307 (426)
                         ..++..                   .|.++++++.+++++.+|++.|.+++++++||+|   +.|   +++|+||..
T Consensus       198 ---~~~v~~-------------------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd---~~g---~lvGivT~~  249 (278)
T 2yvy_A          198 ---RTRVAE-------------------IMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVD---EEG---RLVGIVTVD  249 (278)
T ss_dssp             ---TCBSTT-------------------TSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEEC---TTS---BEEEEEEHH
T ss_pred             ---CCcHHH-------------------HhCCCCeEEeCCCCHHHHHHHHHhcCCCEEEEEe---CCC---eEEEEEEHH
Confidence               001111                   2456788999999999999999999999999995   246   799999999


Q ss_pred             hHHHHHHhh
Q 014342          308 DILKCICRH  316 (426)
Q Consensus       308 dil~~l~~~  316 (426)
                      ||++.+...
T Consensus       250 Dil~~i~~e  258 (278)
T 2yvy_A          250 DVLDVLEAE  258 (278)
T ss_dssp             HHHHHC---
T ss_pred             HHHHHHHHH
Confidence            999987644

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=99.24  E-value=6.2e-12  Score=133.37  Aligned_cols=133  Identities=12%  Similarity=0.054  Sum_probs=94.4

Q ss_pred             CC--CCceEeCCCCCHHHHHHHHH-hCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCC----------
Q 014342          257 CP--RPLVQAGPYDSLKEVALKIL-QNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSS----------  323 (426)
Q Consensus       257 ~~--~~~v~v~~~~sl~~a~~~m~-~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~----------  323 (426)
                      |+  ++++++.+++++.|+.+.|. +++++++||+|+   ++   +++|+||++|+++.+..........          
T Consensus       459 M~p~~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~---~~---~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~~  532 (632)
T 3org_A          459 MHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDA---NG---YLLGAISRKEIVDRLQHVLEDVPEPIAGHRTLVLL  532 (632)
T ss_dssp             CBCTTTSCCBCSSSCHHHHHHHHHHSTTCCEECBBCT---TC---BBCCEESHHHHTTTTTTC-----------------
T ss_pred             hhcCCCceEecCCCcHHHHHHHHHhcCCcceEEEEec---CC---eEEEEEEHHHHHHHHHHHhhhcccccccccceecc
Confidence            56  78899999999999999999 799999999962   45   7999999999998765432110000          


Q ss_pred             -cccccccccccccc-----------------ccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEE
Q 014342          324 -LPILQQPVSSIQLG-----------------TWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLL  385 (426)
Q Consensus       324 -~~~~~~~v~~l~i~-----------------~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lv  385 (426)
                       ...+.+.+..+.-.                 ...+.+.+.|.++++++++++++.+|+++|.+++++++||+ |+|+++
T Consensus       533 ~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~iMt~~pitV~~~~~l~ea~~~M~~~~i~~lpVv-e~G~lv  611 (632)
T 3org_A          533 DAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCDVSPIVVTSYSLVRQLHFLFVMLMPSMIYVT-ERGKLV  611 (632)
T ss_dssp             --------------------------------------CCSCCCCCCEEETTCBHHHHHHHHHHTCCSEEEEE-ETTEEE
T ss_pred             CHHHHHhhcccCCCCCcccchhhhcccceEeeccccccchhhcCCCceecCCCcHHHHHHHHHhcCCCEEEEE-ECCEEE
Confidence             00000111110000                 00011345677899999999999999999999999999999 689999


Q ss_pred             EEEeHHHHHHH
Q 014342          386 DIYSRSDITAL  396 (426)
Q Consensus       386 Giis~~DI~~~  396 (426)
                      |+||++||++.
T Consensus       612 GIVT~~Dll~~  622 (632)
T 3org_A          612 GIVEREDVAYG  622 (632)
T ss_dssp             EEEEGGGTEEC
T ss_pred             EEEehhhHHHH
Confidence            99999999763

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=99.23  E-value=7.6e-11  Score=121.46  Aligned_cols=115  Identities=15%  Similarity=0.204  Sum_probs=96.7

Q ss_pred             CCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccccc
Q 014342          257 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL  336 (426)
Q Consensus       257 ~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i  336 (426)
                      |..+++++.+++++.++++.|.+++++++||+++ .+++   +++|+||.+|+++.     ..       .+.++.++| 
T Consensus        96 m~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~-~~~~---~lvGivt~~Dl~~~-----~~-------~~~~v~~im-  158 (491)
T 1zfj_A           96 VIIDPFFLTPEHKVSEAEELMQRYRISGVPIVET-LANR---KLVGIITNRDMRFI-----SD-------YNAPISEHM-  158 (491)
T ss_dssp             TSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESC-TTTC---BEEEEEEHHHHHHC-----SC-------SSSBTTTSC-
T ss_pred             CcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEe-CCCC---EEEEEEEHHHHhhh-----cc-------CCCcHHHHc-
Confidence            5678889999999999999999999999999951 0235   79999999999853     00       134455554 


Q ss_pred             cccccccCCCCCC-CeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHhc
Q 014342          337 GTWVPRIGEANGR-PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  399 (426)
Q Consensus       337 ~~~~~~~~~~~~~-~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~~  399 (426)
                                 .+ +++++++++++.+++++|.+++++.+||||++|+++|+||+.||++.+..
T Consensus       159 -----------~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGivt~~Dil~~~~~  211 (491)
T 1zfj_A          159 -----------TSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIEF  211 (491)
T ss_dssp             -----------CCSCCCCEETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHHC
T ss_pred             -----------CCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHHHHHHhc
Confidence                       24 67889999999999999999999999999999999999999999998874

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=99.22  E-value=2.7e-12  Score=132.48  Aligned_cols=163  Identities=16%  Similarity=0.164  Sum_probs=24.8

Q ss_pred             hcccccccc-CCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCC--CCcEEEEeehHHHHHHHHHhccCCCCCChhh
Q 014342          152 LSTHTVYEL-LPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDF--KGRFVGVLSALDFILILRELGTNGSNLTEEE  228 (426)
Q Consensus       152 l~~~~~~d~-~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~--~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~  228 (426)
                      +.....+++ |..  .+++++++.|+.+|+++|.+++++.+||+|++  .++++|+||.+|+...    ..   .     
T Consensus        93 v~~V~~~e~gM~~--~~~~v~~~~tv~eal~~m~~~~~s~~pVvd~~~~~g~lvGiVt~~Dl~~~----~~---~-----  158 (503)
T 1me8_A           93 VHAVKNFKAGFVV--SDSNVKPDQTFADVLAISQRTTHNTVAVTDDGTPHGVLLGLVTQRDYPID----LT---Q-----  158 (503)
T ss_dssp             HHHHHTTTC-----------------------------------------------------------------------
T ss_pred             HhhhhhcccCccc--CCeEECCCCcHHHHHHHHHHcCceEEEEEECCCcCCeEEEEEEHHHHHhh----hc---c-----
Confidence            344455666 755  78899999999999999999999999999964  2799999999998642    00   0     


Q ss_pred             hcccchhhhHHHHHhhccccccCCCCCCCCCC--ceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecH
Q 014342          229 LETHTISAWKVGKLQLNLKRQMDGNGRPCPRP--LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASL  306 (426)
Q Consensus       229 l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~--~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~  306 (426)
                       ...++++                   .|+++  ++++.+++++.+|+++|.+++++++||+|+   +|   +++|+||.
T Consensus       159 -~~~~V~d-------------------iM~~~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe---~g---~lvGiIT~  212 (503)
T 1me8_A          159 -TETKVSD-------------------MMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDD---DQ---HLRYIVFR  212 (503)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             -ccCcHHH-------------------HhCCCCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEcC---CC---eEEEEEEe
Confidence             0001111                   24555  889999999999999999999999999962   35   69999999


Q ss_pred             HhHHHHHHhhccccCCCccccccccccccccccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeE
Q 014342          307 SDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPI  377 (426)
Q Consensus       307 ~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPV  377 (426)
                      .||++.+......        ......++.              -..+.. ....+.++.|.+.++..+.|
T Consensus       213 ~Dil~~~~~~~~~--------~d~~~~l~v--------------~a~v~~-~~~~e~~~~l~e~gv~~l~V  260 (503)
T 1me8_A          213 KDYDRSQVCHNEL--------VDSQKRYLV--------------GAGINT-RDFRERVPALVEAGADVLCI  260 (503)
T ss_dssp             ---------CCCC--------BCTTSCBCC--------------EEEECS-SSHHHHHHHHHHHTCSEEEE
T ss_pred             cHHHHhhhcccch--------hcccccccc--------------ccccCc-hhHHHHHHHHHhhhccceEE
Confidence            9999976532110        111111111              123444 66777788888889987755

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=99.22  E-value=6.3e-10  Score=114.77  Aligned_cols=170  Identities=19%  Similarity=0.207  Sum_probs=116.4

Q ss_pred             HHHHHhccccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCC-CCcEEEEeehHHHHHHHHHhccCCCCCC
Q 014342          147 RISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDF-KGRFVGVLSALDFILILRELGTNGSNLT  225 (426)
Q Consensus       147 ~~~~~l~~~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~-~~~~vGilT~~Dli~~l~~~~~~~~~~~  225 (426)
                      .+.+.+.   ..+.|..  .+++++++.|+.+|+++|.++++..+||+|+. +++++|+||.+|+..      ..  .  
T Consensus       108 ~V~~V~~---~~~~m~~--d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g~~~~lvGiVt~rDl~~------~~--~--  172 (511)
T 3usb_A          108 QVDKVKR---SESGVIS--DPFFLTPEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRDMRF------IQ--D--  172 (511)
T ss_dssp             HHHHHHT---SSSCSSS--SCCCBCTTSBHHHHHHHHHHHCCSEEEEESCTTTCBEEEEEEHHHHTT------CC--C--
T ss_pred             HHHHhhc---ccccccc--CCEEECCCCCHHHHHHHHHHcCCcEEEEEecCCCCEEEEEEEehHhhh------hc--c--
Confidence            3445443   2344544  56789999999999999999999999999951 479999999999742      10  0  


Q ss_pred             hhhhcccchhhhHHHHHhhccccccCCCCCCCCC-CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEe
Q 014342          226 EEELETHTISAWKVGKLQLNLKRQMDGNGRPCPR-PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLA  304 (426)
Q Consensus       226 ~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~-~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGii  304 (426)
                          ...++.++                   |++ +++++.+++++.+++++|.+++++.+||+|   ++|   +++|+|
T Consensus       173 ----~~~~V~~v-------------------M~~~~~vtv~~~~~l~eal~~m~~~~i~~lpVVD---e~g---~l~GiI  223 (511)
T 3usb_A          173 ----YSIKISDV-------------------MTKEQLITAPVGTTLSEAEKILQKYKIEKLPLVD---NNG---VLQGLI  223 (511)
T ss_dssp             ----SSSBHHHH-------------------CCCCCCCCEETTCCHHHHHHHHHHHTCSEEEEEC---TTS---BEEEEE
T ss_pred             ----CCCcHHHh-------------------cccCCCEEECCCCCHHHHHHHHHHcCCCEEEEEe---CCC---CEeeec
Confidence                01122222                   355 889999999999999999999999999995   346   799999


Q ss_pred             cHHhHHHHHHhhccccCCCccccccccccccccccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCC
Q 014342          305 SLSDILKCICRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDND  382 (426)
Q Consensus       305 t~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g  382 (426)
                      |..||++.+.....            ..+.+ +..         .--..+.......+.++.|.+.++..+.|-..++
T Consensus       224 T~~Dil~~~~~p~a------------~~D~~-~rl---------~V~aavg~~~d~~era~aLveaGvd~I~Id~a~g  279 (511)
T 3usb_A          224 TIKDIEKVIEFPNS------------AKDKQ-GRL---------LVGAAVGVTADAMTRIDALVKASVDAIVLDTAHG  279 (511)
T ss_dssp             EHHHHHHHHHCTTC------------CBCTT-SCB---------CCEEEECSSTTHHHHHHHHHHTTCSEEEEECSCT
T ss_pred             cHHHHHHhhhcccc------------hhhhc-cce---------eeeeeeeeccchHHHHHHHHhhccceEEeccccc
Confidence            99999998753211            00110 000         0112344444456666777788888776654443

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=99.21  E-value=1.2e-12  Score=135.10  Aligned_cols=117  Identities=18%  Similarity=0.173  Sum_probs=0.0

Q ss_pred             CCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccccc
Q 014342          257 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL  336 (426)
Q Consensus       257 ~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i  336 (426)
                      |.++++++.+++++.+|+++|.+++++++||+|++...+   +++|+||.+|++..  .         .....++.++|.
T Consensus       103 M~~~~~~v~~~~tv~eal~~m~~~~~s~~pVvd~~~~~g---~lvGiVt~~Dl~~~--~---------~~~~~~V~diM~  168 (503)
T 1me8_A          103 FVVSDSNVKPDQTFADVLAISQRTTHNTVAVTDDGTPHG---VLLGLVTQRDYPID--L---------TQTETKVSDMMT  168 (503)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccCCeEECCCCcHHHHHHHHHHcCceEEEEEECCCcCC---eEEEEEEHHHHHhh--h---------ccccCcHHHHhC
Confidence            567889999999999999999999999999996310015   69999999999863  1         112445665552


Q ss_pred             cccccccCCCCCCC--eEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHhc
Q 014342          337 GTWVPRIGEANGRP--FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  399 (426)
Q Consensus       337 ~~~~~~~~~~~~~~--v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~~  399 (426)
                                  ++  ++++++++++.+|+++|.+++++.+||||++|+++|+||++||++.+..
T Consensus       169 ------------~~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~~~  221 (503)
T 1me8_A          169 ------------PFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQHLRYIVFRKDYDRSQVC  221 (503)
T ss_dssp             -----------------------------------------------------------------
T ss_pred             ------------CCCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEecHHHHhhhc
Confidence                        23  8899999999999999999999999999999999999999999987653

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=99.20  E-value=1.4e-12  Score=131.87  Aligned_cols=112  Identities=21%  Similarity=0.286  Sum_probs=0.0

Q ss_pred             CCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccccc
Q 014342          258 PRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLG  337 (426)
Q Consensus       258 ~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~  337 (426)
                      ...++++.|+.++.+|.++|.+++++.+||+++...++   +++||||.+|+. +.  .          .+.+|.++|. 
T Consensus       145 i~dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~~~~---kLvGIvT~RD~r-f~--d----------~~~~V~evMT-  207 (556)
T 4af0_A          145 ITDPLCLGPDATVGDVLEIKAKFGFCGVPITETGEPDS---KLLGIVTGRDVQ-FQ--D----------AETPIKSVMT-  207 (556)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCCCeEcCCCCCHHHHHHHHHHhCCCccccccccCcCC---EEEEEEeccccc-cc--c----------cceEhhhhcc-
Confidence            45678999999999999999999999999996433345   799999999963 21  1          1345666652 


Q ss_pred             ccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHH
Q 014342          338 TWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA  397 (426)
Q Consensus       338 ~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~  397 (426)
                                 ++++|++.+.++.+|.++|.++++..+||||++|+++|+||+.||.+..
T Consensus       208 -----------~~lvt~~~~~~leeA~~iL~~~kieklpVVd~~g~LvGlIT~kDi~k~~  256 (556)
T 4af0_A          208 -----------TEVVTGSSPITLEKANSLLRETKKGKLPIVDSNGHLVSLVARSDLLKNQ  256 (556)
T ss_dssp             ------------------------------------------------------------
T ss_pred             -----------cceEEecCCCCHHHHHHHHHHccccceeEEccCCcEEEEEEechhhhhh
Confidence                       4789999999999999999999999999999999999999999998754

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=99.18  E-value=6.7e-12  Score=129.03  Aligned_cols=113  Identities=16%  Similarity=0.170  Sum_probs=82.7

Q ss_pred             CCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccccc
Q 014342          257 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL  336 (426)
Q Consensus       257 ~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i  336 (426)
                      |..+++++.+++++.+++++|.+++++++||+++   ++   +++|+||.+|++.      .      .....++.++|.
T Consensus        95 m~~d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~---~~---~lvGiVt~rDL~~------~------~~~~~~v~diM~  156 (496)
T 4fxs_A           95 VVTHPVTVRPEQTIADVMELTHYHGFAGFPVVTE---NN---ELVGIITGRDVRF------V------TDLTKSVAAVMT  156 (496)
T ss_dssp             -CBCCCCBCSSSBHHHHHHHHTSSCCCEEEEECS---SS---BEEEEEEHHHHTT------C------CCTTSBGGGTSE
T ss_pred             cccCceEECCCCCHHHHHHHHHHcCCcEEEEEcc---CC---EEEEEEEHHHHhh------c------ccCCCcHHHHhc
Confidence            5678899999999999999999999999999963   35   7999999999851      1      112445666552


Q ss_pred             cccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHH
Q 014342          337 GTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA  397 (426)
Q Consensus       337 ~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~  397 (426)
                      . .         .+++++++++++.+|+++|.++++..+||||++|+++|+||+.||++..
T Consensus       157 p-~---------~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~G~l~GiIT~~DIl~~~  207 (496)
T 4fxs_A          157 P-K---------ERLATVKEGATGAEVQEKMHKARVEKILVVNDEFQLKGMITAKDFHKAE  207 (496)
T ss_dssp             E-G---------GGCCEEECC----CGGGTCC---CCCEEEECTTSBCCEEECCC-----C
T ss_pred             C-C---------CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEeehHhHHHHhh
Confidence            0 1         1578999999999999999999999999999999999999999999854

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=99.16  E-value=2.1e-10  Score=117.46  Aligned_cols=129  Identities=17%  Similarity=0.296  Sum_probs=102.4

Q ss_pred             HHHHHHHh--ccccccccCCCCCcEEEEcCCccHHHHHHHHHHC-----CCCeeeeeeCCCCcEEEEeehHHHHHHHHHh
Q 014342          145 RDRISSFL--STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQ-----GLPMVPLWDDFKGRFVGVLSALDFILILREL  217 (426)
Q Consensus       145 ~~~~~~~l--~~~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~-----~i~slPV~D~~~~~~vGilT~~Dli~~l~~~  217 (426)
                      ++.+.+.+  .+.++.++|..  .+++++++.++.+|++.|.++     ++..+||+|++ ++++|++|.+|++..    
T Consensus       143 ~~~i~~~l~~~~~~v~~iM~~--~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~~-~~lvGiVt~~Dll~~----  215 (473)
T 2zy9_A          143 RAEVEALARYEEDEAGGLMTP--EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEK-GRLKGVLSLRDLIVA----  215 (473)
T ss_dssp             HHHHHHHHTSCTTBSTTTCBS--CEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECTT-SBEEEEEEHHHHHHS----
T ss_pred             HHHHHHHhcCCCCCHHHhCCC--CceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECCC-CcEEEEEEHHHHhcC----
Confidence            33344444  36778899975  799999999999999999986     58999999964 799999999998631    


Q ss_pred             ccCCCCCChhhhcccchhhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCc
Q 014342          218 GTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSC  297 (426)
Q Consensus       218 ~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~  297 (426)
                       .  .        ..++++                   .|.++++++.+++++.++++.|.+++.+++||+|   +.|  
T Consensus       216 -~--~--------~~~v~d-------------------im~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVD---e~g--  260 (473)
T 2zy9_A          216 -D--P--------RTRVAE-------------------IMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVD---EEG--  260 (473)
T ss_dssp             -C--T--------TSBGGG-------------------TSBSSCCCEESSSBHHHHHHHHHHHTCSEEEEEC---TTS--
T ss_pred             -C--C--------CCcHHH-------------------HhCCCCeEEeCCCcHHHHHHHHHhcCCcEEEEEc---CCC--
Confidence             0  0        011121                   2466788999999999999999999999999995   346  


Q ss_pred             ceEEEEecHHhHHHHHHhh
Q 014342          298 QEILYLASLSDILKCICRH  316 (426)
Q Consensus       298 ~~lvGiit~~dil~~l~~~  316 (426)
                       +++|+||..|+++.+...
T Consensus       261 -~lvGiIT~~Dil~~i~~e  278 (473)
T 2zy9_A          261 -RLVGIVTVDDVLDVLEAE  278 (473)
T ss_dssp             -BEEEEEEHHHHHHHHHHH
T ss_pred             -EEEEEEehHhhHHHHHHH
Confidence             799999999999987643

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=99.14  E-value=1.2e-11  Score=131.06  Aligned_cols=152  Identities=12%  Similarity=0.131  Sum_probs=100.7

Q ss_pred             ccccccccCCCCCcEEEEcCCccHHHHHHHHH-HCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccC-CCC-------
Q 014342          153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLY-EQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTN-GSN-------  223 (426)
Q Consensus       153 ~~~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~-~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~-~~~-------  223 (426)
                      .+.++.|+|....++++++++.|+.++.+.|. +++++++||+|+ +++++|+||.+|+.+.+...... ...       
T Consensus       451 ~~~~V~diM~p~~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~-~~~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~  529 (632)
T 3org_A          451 PEMTAREIMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDA-NGYLLGAISRKEIVDRLQHVLEDVPEPIAGHRTL  529 (632)
T ss_dssp             TTSBHHHHCBCTTTSCCBCSSSCHHHHHHHHHHSTTCCEECBBCT-TCBBCCEESHHHHTTTTTTC--------------
T ss_pred             ccCcHHHHhhcCCCceEecCCCcHHHHHHHHHhcCCcceEEEEec-CCeEEEEEEHHHHHHHHHHHhhhcccccccccce
Confidence            45678899985557889999999999999999 799999999996 57999999999987654321100 000       


Q ss_pred             --CChhhhcccchhhhHHHH-----Hhhcc-----ccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecC
Q 014342          224 --LTEEELETHTISAWKVGK-----LQLNL-----KRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHST  291 (426)
Q Consensus       224 --~~~~~l~~~~i~~~~~~~-----~~~~~-----~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d  291 (426)
                        ....++.+ .++...+..     ....+     ....+-....|+++++++++++++.+|++.|.+++++++||++  
T Consensus       530 ~~~~~~~l~~-~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~iMt~~pitV~~~~~l~ea~~~M~~~~i~~lpVve--  606 (632)
T 3org_A          530 VLLDAADLSE-NIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCDVSPIVVTSYSLVRQLHFLFVMLMPSMIYVTE--  606 (632)
T ss_dssp             ------------------------------------------CCSCCCCCCEEETTCBHHHHHHHHHHTCCSEEEEEE--
T ss_pred             eccCHHHHHh-hcccCCCCCcccchhhhcccceEeeccccccchhhcCCCceecCCCcHHHHHHHHHhcCCCEEEEEE--
Confidence              00000000 000000000     00000     0000011235788899999999999999999999999999993  


Q ss_pred             CCCCCcceEEEEecHHhHHHHH
Q 014342          292 GPAGSCQEILYLASLSDILKCI  313 (426)
Q Consensus       292 ~~~g~~~~lvGiit~~dil~~l  313 (426)
                        +|   +++||||.+||++.+
T Consensus       607 --~G---~lvGIVT~~Dll~~~  623 (632)
T 3org_A          607 --RG---KLVGIVEREDVAYGY  623 (632)
T ss_dssp             --TT---EEEEEEEGGGTEECC
T ss_pred             --CC---EEEEEEehhhHHHHH
Confidence              35   799999999997653

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=99.13  E-value=4.7e-12  Score=130.09  Aligned_cols=113  Identities=18%  Similarity=0.173  Sum_probs=0.0

Q ss_pred             CCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccccc
Q 014342          257 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL  336 (426)
Q Consensus       257 ~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i  336 (426)
                      |..+++++.+++++.+|+++|.+++++++||++    ++   +++|+||.+|+....            ....++.++|.
T Consensus        94 m~~~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd----~g---~lvGIVt~rDl~~~~------------~~~~~V~~vMt  154 (490)
T 4avf_A           94 IVRDPVTVTPSTKIIELLQMAREYGFSGFPVVE----QG---ELVGIVTGRDLRVKP------------NAGDTVAAIMT  154 (490)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccCceEeCCCCcHHHHHHHHHHhCCCEEEEEE----CC---EEEEEEEhHHhhhcc------------ccCCcHHHHhc
Confidence            567788999999999999999999999999995    35   699999999985311            12345555552


Q ss_pred             cccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHh
Q 014342          337 GTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  398 (426)
Q Consensus       337 ~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~  398 (426)
                      . .         .+++++++++++.+|+++|.+++++.+||||++|+++|+||+.||++...
T Consensus       155 p-~---------~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~~  206 (490)
T 4avf_A          155 P-K---------DKLVTAREGTPLEEMKAKLYENRIEKMLVVDENFYLRGLVTFRDIEKAKT  206 (490)
T ss_dssp             --------------------------------------------------------------
T ss_pred             c-C---------CCCEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHhhhhcc
Confidence            0 0         16889999999999999999999999999999999999999999998654

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=99.12  E-value=5.8e-12  Score=129.90  Aligned_cols=116  Identities=17%  Similarity=0.287  Sum_probs=5.9

Q ss_pred             CCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccccc
Q 014342          257 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL  336 (426)
Q Consensus       257 ~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i  336 (426)
                      |.++++++.+++++.+|+++|.+++++++||+|+   ++   +++|+||..|+++..     .       ...++.++|.
T Consensus       101 M~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~---~~---~lvGivt~~Dl~~~~-----~-------~~~~v~~im~  162 (494)
T 1vrd_A          101 IIYDPITVTPDMTVKEAIDLMAEYKIGGLPVVDE---EG---RLVGLLTNRDVRFEK-----N-------LSKKIKDLMT  162 (494)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CccCCeEECCCCCHHHHHHHHHHcCceEEEEEcC---CC---EEEEEEEHHHHHhhc-----C-------CCCcHHHHhC
Confidence            5678899999999999999999999999999952   35   699999999998520     0       1345555552


Q ss_pred             cccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHhcc
Q 014342          337 GTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDK  400 (426)
Q Consensus       337 ~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~~~  400 (426)
                      .          ..+++++.+++++.+|+++|.+++++.+||||++|+++|+||+.||++.+...
T Consensus       163 ~----------~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~~~~  216 (494)
T 1vrd_A          163 P----------REKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLITIKDIMSVIEHP  216 (494)
T ss_dssp             --------------------------------------------------------CHHHHTCT
T ss_pred             C----------CCCCeEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHhhhccc
Confidence            1          01778999999999999999999999999999999999999999999987644

>4aef_A Neopullulanase (alpha-amylase II); hydrolase, thermostability, high temperature; 2.34A {Pyrococcus furiosus}

Probab=99.11  E-value=9.5e-11  Score=124.72  Aligned_cols=68  Identities=26%  Similarity=0.455  Sum_probs=60.3

Q ss_pred             cceEEEEEecCCCceEEEEeccCCCCCC-CCCCCCCCCCCeEEEEEecCCceEEEEEEEcCeeecCCCCCee
Q 014342           19 ILVPVRFIWPNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHV   89 (426)
Q Consensus        19 ~~~~v~f~~~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~L~~g~y~ykFiVDg~w~~d~~~p~~   89 (426)
                      ....|.|.|+.+|+.++|+|+||+|.+. .+|++.   ++.|.+++.||||.|+|||+|||+|..||.+|..
T Consensus        15 ~~~~~~~~~~~~~~~~yl~G~Fn~w~~~~~~m~~~---g~~~~~~v~L~~G~y~Y~f~vdg~~~~dp~n~~~   83 (645)
T 4aef_A           15 RVAEVEFSLIREGSYAYLLGDFNAFNEGSFRMEQE---GKNWKIKIALPEGVWHYAFSIDGKFVLDPDNPER   83 (645)
T ss_dssp             EEEEEEEEEECCSSCEEEEETTTTTCTTSSEEEEC---SSEEEEEEEECSEEEEEEEEETTEEECCTTCCCE
T ss_pred             eEEEEEEecCCCCeEEEEEEcCCCCCCCcccceEc---CCEEEEEEEeCCceEEEEEEECCeEecCCCCCCc
Confidence            3567899999999999999999999975 477653   6899999999999999999999999999999854

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=99.01  E-value=2.9e-09  Score=109.66  Aligned_cols=117  Identities=19%  Similarity=0.238  Sum_probs=94.6

Q ss_pred             cccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeC-CCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhh
Q 014342          158 YELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDD-FKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISA  236 (426)
Q Consensus       158 ~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~-~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~  236 (426)
                      .++|..  .+++++++.++.+|+++|.++++..+||+|. +.++++|+||.+|++..     ..         ...++.+
T Consensus        93 ~~im~~--~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~lvGivt~~Dl~~~-----~~---------~~~~v~~  156 (491)
T 1zfj_A           93 ENGVII--DPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFI-----SD---------YNAPISE  156 (491)
T ss_dssp             TTTTSS--SCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHC-----SC---------SSSBTTT
T ss_pred             HhcCcC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEEeCCCCEEEEEEEHHHHhhh-----cc---------CCCcHHH
Confidence            567765  6788899999999999999999999999982 34799999999997632     00         0001111


Q ss_pred             hHHHHHhhccccccCCCCCCCCC-CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHh
Q 014342          237 WKVGKLQLNLKRQMDGNGRPCPR-PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICR  315 (426)
Q Consensus       237 ~~~~~~~~~~~~~~~g~~~~~~~-~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~  315 (426)
                                         .|++ +++++.+++++.++++.|.+++++++||+|   +.+   +++|++|..||++.+..
T Consensus       157 -------------------im~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd---~~g---~lvGivt~~Dil~~~~~  211 (491)
T 1zfj_A          157 -------------------HMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVD---NSG---RLSGLITIKDIEKVIEF  211 (491)
T ss_dssp             -------------------SCCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEEC---TTS---BEEEEEEHHHHHHHHHC
T ss_pred             -------------------HcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEc---CCC---cEEEEEEHHHHHHHHhc
Confidence                               2455 788999999999999999999999999995   346   79999999999998764

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=99.00  E-value=8.9e-12  Score=129.12  Aligned_cols=117  Identities=17%  Similarity=0.213  Sum_probs=65.0

Q ss_pred             CCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccccc
Q 014342          257 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL  336 (426)
Q Consensus       257 ~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i  336 (426)
                      |.++++++.+++++.+|+++|.+++++.+||+|++..++   +++|+||.+|+.....          .....++.++|.
T Consensus       114 m~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~---~lvGiVt~~Dl~~~~~----------~~~~~~v~~vm~  180 (514)
T 1jcn_A          114 FITDPVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGS---KLVGIVTSRDIDFLAE----------KDHTTLLSEVMT  180 (514)
T ss_dssp             SCSSCCCCCC-----------------CEESCC-----------CCEECTTTTC--------------------------
T ss_pred             cccCCEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCcCC---EEEEEEEHHHHHhhhh----------ccCCCCHHHHhC
Confidence            566788999999999999999999999999996311035   7999999999875310          012344555542


Q ss_pred             cccccccCCCCCC--CeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHh
Q 014342          337 GTWVPRIGEANGR--PFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  398 (426)
Q Consensus       337 ~~~~~~~~~~~~~--~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~  398 (426)
                                  +  +++++.+++++.+|+++|.+++++.+||||++|+++|+||++||++.+.
T Consensus       181 ------------~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~~  232 (514)
T 1jcn_A          181 ------------PRIELVVAPAGVTLKEANEILQRSKKGKLPIVNDCDELVAIIARTDLKKNRD  232 (514)
T ss_dssp             ------------CCBCCCCEETTCCSTTTTTHHHHHTCSCCCEESSSSCCC----CCCCSSCCC
T ss_pred             ------------CCCCCeEECCCCCHHHHHHHHHHcCCCcccEECCCCeEEEEEEHHHHHHHhh
Confidence                        3  6789999999999999999999999999999999999999999887543

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=98.94  E-value=6.6e-10  Score=114.21  Aligned_cols=116  Identities=12%  Similarity=0.153  Sum_probs=79.5

Q ss_pred             cccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchh
Q 014342          156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTIS  235 (426)
Q Consensus       156 ~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~  235 (426)
                      +..++|.  ..+++++++.++.+|+++|.+++++.+||+|+ +++++|+||.+|+.      ...  .      ...++.
T Consensus        90 ~~~~~m~--~d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~-~~~lvGiVt~rDL~------~~~--~------~~~~v~  152 (496)
T 4fxs_A           90 IFEAGVV--THPVTVRPEQTIADVMELTHYHGFAGFPVVTE-NNELVGIITGRDVR------FVT--D------LTKSVA  152 (496)
T ss_dssp             HCCC--C--BCCCCBCSSSBHHHHHHHHTSSCCCEEEEECS-SSBEEEEEEHHHHT------TCC--C------TTSBGG
T ss_pred             ccccccc--cCceEECCCCCHHHHHHHHHHcCCcEEEEEcc-CCEEEEEEEHHHHh------hcc--c------CCCcHH
Confidence            3456676  36788999999999999999999999999996 47999999999974      110  0      001111


Q ss_pred             hhHHHHHhhccccccCCCCCCCC-C-CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHH
Q 014342          236 AWKVGKLQLNLKRQMDGNGRPCP-R-PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCI  313 (426)
Q Consensus       236 ~~~~~~~~~~~~~~~~g~~~~~~-~-~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l  313 (426)
                      +                   .|+ + +++++.+++++.+++++|.+++++.+||+|   +.|   +++|+||..||++..
T Consensus       153 d-------------------iM~p~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVD---e~G---~l~GiIT~~DIl~~~  207 (496)
T 4fxs_A          153 A-------------------VMTPKERLATVKEGATGAEVQEKMHKARVEKILVVN---DEF---QLKGMITAKDFHKAE  207 (496)
T ss_dssp             G-------------------TSEEGGGCCEEECC----CGGGTCC---CCCEEEEC---TTS---BCCEEECCC-----C
T ss_pred             H-------------------HhcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEc---CCC---CEEEeehHhHHHHhh
Confidence            1                   134 2 578999999999999999999999999995   346   799999999999864

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=98.92  E-value=1.2e-09  Score=81.60  Aligned_cols=47  Identities=15%  Similarity=0.322  Sum_probs=42.9

Q ss_pred             eEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHh
Q 014342          351 FAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  398 (426)
Q Consensus       351 v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~  398 (426)
                      ++++++++++.+|+++|.+++++++||+| +|+++|+||.+||++.+.
T Consensus         2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d-~~~lvGIvT~~Di~~~~~   48 (70)
T 3ghd_A            2 AIVVQPKDTVDRVAKILSRNKAGSAVVME-GDEILGVVTERDILDKVV   48 (70)
T ss_dssp             EEEECTTCBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHHHHTT
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHH
Confidence            57899999999999999999999999998 589999999999986443

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=98.91  E-value=1.3e-10  Score=119.56  Aligned_cols=109  Identities=15%  Similarity=0.335  Sum_probs=0.5

Q ss_pred             CCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccccc
Q 014342          257 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL  336 (426)
Q Consensus       257 ~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i  336 (426)
                      |..+++++.+++++.++++.|.+++++++||++  +  +   +++|+||.+|++.   .           ...++.++| 
T Consensus        99 m~~~~~~v~~~~tv~ea~~~~~~~~~~~~pVvd--~--~---~lvGivt~~Dl~~---~-----------~~~~v~~im-  156 (486)
T 2cu0_A           99 IVEDVITIAPDETVDFALFLMEKHGIDGLPVVE--D--E---KVVGIITKKDIAA---R-----------EGKLVKELM-  156 (486)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccCceEECCCCCHHHHHHHHHHcCCcEEEEEE--C--C---EEEEEEEHHHhcc---C-----------CCCCHHHHc-
Confidence            567888999999999999999999999999995  2  4   6999999999875   1           123444444 


Q ss_pred             cccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHh
Q 014342          337 GTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  398 (426)
Q Consensus       337 ~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~  398 (426)
                                 .++++++++++++.+|+++|.+++++.+||||++|+++|+||+.||++...
T Consensus       157 -----------~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVde~g~lvGiiT~~Dil~~~~  207 (486)
T 2cu0_A          157 -----------TKEVITVPESIEVEEALKIMIENRIDRLPVVDERGKLVGLITMSDLVARKK  207 (486)
T ss_dssp             -------------------------------------------------------------C
T ss_pred             -----------cCCCeEECCcCcHHHHHHHHHHcCCCEEEEEecCCeEEEEEEHHHHHHhhh
Confidence                       247788999999999999999999999999999999999999999998765

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=98.90  E-value=1.1e-09  Score=112.42  Aligned_cols=117  Identities=17%  Similarity=0.252  Sum_probs=2.7

Q ss_pred             ccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccch
Q 014342          155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTI  234 (426)
Q Consensus       155 ~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i  234 (426)
                      .++.++|..  .+++++++.|+.+|+++|.++++..+||+|  .++++|+||..|+....    .          ...++
T Consensus        88 k~~~~~m~~--~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd--~g~lvGIVt~rDl~~~~----~----------~~~~V  149 (490)
T 4avf_A           88 KKHETAIVR--DPVTVTPSTKIIELLQMAREYGFSGFPVVE--QGELVGIVTGRDLRVKP----N----------AGDTV  149 (490)
T ss_dssp             HHCCC---------------------------------------------------------------------------
T ss_pred             cccccCccc--CceEeCCCCcHHHHHHHHHHhCCCEEEEEE--CCEEEEEEEhHHhhhcc----c----------cCCcH
Confidence            345677764  578999999999999999999999999999  47999999999974110    0          00011


Q ss_pred             hhhHHHHHhhccccccCCCCCCCC-C-CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHH
Q 014342          235 SAWKVGKLQLNLKRQMDGNGRPCP-R-PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (426)
Q Consensus       235 ~~~~~~~~~~~~~~~~~g~~~~~~-~-~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~  312 (426)
                      .+                   .|+ + +++++.+++++.+|+++|.+++++.+||+|   ++|   +++|+||..||++.
T Consensus       150 ~~-------------------vMtp~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVD---e~g---~lvGiIT~~Dil~~  204 (490)
T 4avf_A          150 AA-------------------IMTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVD---ENF---YLRGLVTFRDIEKA  204 (490)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HH-------------------HhccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEEc---CCC---cEEEEEehHHhhhh
Confidence            11                   244 3 689999999999999999999999999996   346   79999999999987


Q ss_pred             HH
Q 014342          313 IC  314 (426)
Q Consensus       313 l~  314 (426)
                      ..
T Consensus       205 ~~  206 (490)
T 4avf_A          205 KT  206 (490)
T ss_dssp             --
T ss_pred             cc
Confidence            53

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=98.85  E-value=1.1e-09  Score=112.70  Aligned_cols=118  Identities=20%  Similarity=0.329  Sum_probs=6.3

Q ss_pred             cccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchh
Q 014342          156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTIS  235 (426)
Q Consensus       156 ~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~  235 (426)
                      +..|+|..  ++++++++.++.+|+++|.++++..+||+|+ +++++|+||..|+... .   .          ...++.
T Consensus        96 ~~~~iM~~--~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~-~~~lvGivt~~Dl~~~-~---~----------~~~~v~  158 (494)
T 1vrd_A           96 KTENGIIY--DPITVTPDMTVKEAIDLMAEYKIGGLPVVDE-EGRLVGLLTNRDVRFE-K---N----------LSKKIK  158 (494)
T ss_dssp             TC------------------------------------------------------------------------------
T ss_pred             hHhhcCcc--CCeEECCCCCHHHHHHHHHHcCceEEEEEcC-CCEEEEEEEHHHHHhh-c---C----------CCCcHH
Confidence            35677865  6888999999999999999999999999995 4799999999997631 0   0          000111


Q ss_pred             hhHHHHHhhccccccCCCCCCCCC--CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHH
Q 014342          236 AWKVGKLQLNLKRQMDGNGRPCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCI  313 (426)
Q Consensus       236 ~~~~~~~~~~~~~~~~g~~~~~~~--~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l  313 (426)
                      +                   .|++  +++++.+++++.+++++|.+++++++||+|   ++|   +++|+||..|+++.+
T Consensus       159 ~-------------------im~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd---~~g---~lvGiIt~~Dll~~~  213 (494)
T 1vrd_A          159 D-------------------LMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVS---KDN---KLVGLITIKDIMSVI  213 (494)
T ss_dssp             ---------------------------------------------------------------------------CHHHH
T ss_pred             H-------------------HhCCCCCCeEECCCCCHHHHHHHHHHcCCcEEEEEc---CCC---eEEEEEEHHHHHhhh
Confidence            1                   2455  788999999999999999999999999996   245   799999999999987


Q ss_pred             Hh
Q 014342          314 CR  315 (426)
Q Consensus       314 ~~  315 (426)
                      ..
T Consensus       214 ~~  215 (494)
T 1vrd_A          214 EH  215 (494)
T ss_dssp             TC
T ss_pred             cc
Confidence            53

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=98.78  E-value=3.1e-09  Score=109.15  Aligned_cols=161  Identities=17%  Similarity=0.277  Sum_probs=22.6

Q ss_pred             cccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhh
Q 014342          158 YELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAW  237 (426)
Q Consensus       158 ~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~  237 (426)
                      .+.|.  .++++++++.++.+|+++|.++++..+||+|.  ++++|+||.+|++.      ..          ..++.+ 
T Consensus        96 ~~~m~--~~~~~v~~~~tv~ea~~~~~~~~~~~~pVvd~--~~lvGivt~~Dl~~------~~----------~~~v~~-  154 (486)
T 2cu0_A           96 ERLIV--EDVITIAPDETVDFALFLMEKHGIDGLPVVED--EKVVGIITKKDIAA------RE----------GKLVKE-  154 (486)
T ss_dssp             C-------------------------------------------------------------------------------
T ss_pred             hhccc--cCceEECCCCCHHHHHHHHHHcCCcEEEEEEC--CEEEEEEEHHHhcc------CC----------CCCHHH-
Confidence            34565  47889999999999999999999999999985  78999999999753      00          001111 


Q ss_pred             HHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhc
Q 014342          238 KVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHF  317 (426)
Q Consensus       238 ~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~  317 (426)
                                        .|.++++++.+++++.++++.|.+++++.+||+|   +.|   +++|++|..||++.+... 
T Consensus       155 ------------------im~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd---e~g---~lvGiiT~~Dil~~~~~~-  209 (486)
T 2cu0_A          155 ------------------LMTKEVITVPESIEVEEALKIMIENRIDRLPVVD---ERG---KLVGLITMSDLVARKKYK-  209 (486)
T ss_dssp             ----------------------------------------------------------------------------CCT-
T ss_pred             ------------------HccCCCeEECCcCcHHHHHHHHHHcCCCEEEEEe---cCC---eEEEEEEHHHHHHhhhcc-
Confidence                              2456788999999999999999999999999995   345   699999999999874311 


Q ss_pred             cccCCCccccccccccccccccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEc-CCCcEEEEE
Q 014342          318 KHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVD-DNDSLLDIY  388 (426)
Q Consensus       318 ~~~~~~~~~~~~~v~~l~i~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd-~~g~lvGii  388 (426)
                       .          ...+. .+.+.         --..+..++  .+.+..|.+.++..+ |++ ..|...+++
T Consensus       210 -~----------~~~~~-~g~~~---------v~~~~~~~~--~~~a~~l~~~gvd~l-vvdta~G~~~~~L  257 (486)
T 2cu0_A          210 -N----------AVRDE-NGELL---------VAAAVSPFD--IKRAIELDKAGVDVI-VVDTAHAHNLKAI  257 (486)
T ss_dssp             -T----------CCBCT-TSCBC---------CEEEECTTC--HHHHHHHHHTTCSEE-EEECSCCCCHHHH
T ss_pred             -c----------ccccc-CCcee---------ecceechhh--HHHHHHHHHhcCCce-EEEecCCcEeehh
Confidence             0          00000 01111         001233333  566788889999886 555 345544443

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=98.78  E-value=7e-10  Score=112.23  Aligned_cols=108  Identities=19%  Similarity=0.295  Sum_probs=0.0

Q ss_pred             cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCC--CCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHh
Q 014342          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDF--KGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQ  243 (426)
Q Consensus       166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~--~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~  243 (426)
                      .++++.++.||.+|+++|.++++..+||+|..  +++++||||.+|+- +     .        +.. ..+++       
T Consensus       147 dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~~~~kLvGIvT~RD~r-f-----~--------d~~-~~V~e-------  204 (556)
T 4af0_A          147 DPLCLGPDATVGDVLEIKAKFGFCGVPITETGEPDSKLLGIVTGRDVQ-F-----Q--------DAE-TPIKS-------  204 (556)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCeEcCCCCCHHHHHHHHHHhCCCccccccccCcCCEEEEEEeccccc-c-----c--------ccc-eEhhh-------
Confidence            47899999999999999999999999999853  47999999999952 1     0        000 01111       


Q ss_pred             hccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHH
Q 014342          244 LNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCI  313 (426)
Q Consensus       244 ~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l  313 (426)
                                  .|+++++++.++.++.+|.++|.++++..+||+|   +++   +|+|+||..|+++.-
T Consensus       205 ------------vMT~~lvt~~~~~~leeA~~iL~~~kieklpVVd---~~g---~LvGlIT~kDi~k~~  256 (556)
T 4af0_A          205 ------------VMTTEVVTGSSPITLEKANSLLRETKKGKLPIVD---SNG---HLVSLVARSDLLKNQ  256 (556)
T ss_dssp             ----------------------------------------------------------------------
T ss_pred             ------------hcccceEEecCCCCHHHHHHHHHHccccceeEEc---cCC---cEEEEEEechhhhhh
Confidence                        3577899999999999999999999999999996   345   799999999998753

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=98.73  E-value=1.4e-08  Score=75.83  Aligned_cols=62  Identities=23%  Similarity=0.253  Sum_probs=49.1

Q ss_pred             ceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccc
Q 014342          261 LVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  335 (426)
Q Consensus       261 ~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~  335 (426)
                      ++++.|++++.+|+++|.+++++++||++    +|   +++||+|.+||++.+....      ....+.+++++|
T Consensus         2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d----~~---~lvGIvT~~Di~~~~~~~~------~~~~~~~V~~iM   63 (70)
T 3ghd_A            2 AIVVQPKDTVDRVAKILSRNKAGSAVVME----GD---EILGVVTERDILDKVVAKG------KNPKEVKVEEIM   63 (70)
T ss_dssp             EEEECTTCBHHHHHHHHHHTTCSEEEEEE----TT---EEEEEEEHHHHHHHTTTTT------CCGGGCBGGGTC
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEEE----CC---EEEEEEEHHHHHHHHHhcC------CCcccCCHHHhc
Confidence            57899999999999999999999999995    25   7999999999987654321      123345666665

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=98.70  E-value=7.8e-10  Score=114.48  Aligned_cols=119  Identities=18%  Similarity=0.231  Sum_probs=66.2

Q ss_pred             cccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCC--CCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccc
Q 014342          156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDF--KGRFVGVLSALDFILILRELGTNGSNLTEEELETHT  233 (426)
Q Consensus       156 ~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~--~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~  233 (426)
                      ++.++|..  .++++.++.++.+|+++|.+++++.+||+|++  .++++|+||..|+.....            .....+
T Consensus       109 ~~~~im~~--~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~~lvGiVt~~Dl~~~~~------------~~~~~~  174 (514)
T 1jcn_A          109 NFEQGFIT--DPVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDIDFLAE------------KDHTTL  174 (514)
T ss_dssp             TCCTTSCS--SCCCCCC-----------------CEESCC--------CCEECTTTTC----------------------
T ss_pred             hhhhcccc--CCEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCcCCEEEEEEEHHHHHhhhh------------ccCCCC
Confidence            67788875  57789999999999999999999999999963  479999999999753210            000001


Q ss_pred             hhhhHHHHHhhccccccCCCCCCCCC--CceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342          234 ISAWKVGKLQLNLKRQMDGNGRPCPR--PLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (426)
Q Consensus       234 i~~~~~~~~~~~~~~~~~g~~~~~~~--~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~  311 (426)
                      +.+                   .|.+  +++++.+++++.+|+++|.+++++.+||+|   ++|   +++|+||++||++
T Consensus       175 v~~-------------------vm~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd---~~g---~lvGiIt~~Dll~  229 (514)
T 1jcn_A          175 LSE-------------------VMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVN---DCD---ELVAIIARTDLKK  229 (514)
T ss_dssp             -------------------------CCBCCCCEETTCCSTTTTTHHHHHTCSCCCEES---SSS---CCC----CCCCSS
T ss_pred             HHH-------------------HhCCCCCCeEECCCCCHHHHHHHHHHcCCCcccEEC---CCC---eEEEEEEHHHHHH
Confidence            111                   2455  788999999999999999999999999995   245   7999999999987


Q ss_pred             HH
Q 014342          312 CI  313 (426)
Q Consensus       312 ~l  313 (426)
                      .+
T Consensus       230 ~~  231 (514)
T 1jcn_A          230 NR  231 (514)
T ss_dssp             CC
T ss_pred             Hh
Confidence            54

>2z0b_A GDE5, KIAA1434, putative glycerophosphodiester phosphodiesterase; CBM20 domain, starch-binding, hydrolase, STR genomics, NPPSFA; 2.00A {Homo sapiens}

Probab=98.50  E-value=2.2e-07  Score=78.05  Aligned_cols=58  Identities=21%  Similarity=0.424  Sum_probs=48.1

Q ss_pred             cceEEEEEecC---CCceEEEEec---cCCCCCC--CCCCCCC--CCCCeEEEEEecCCce-EEEEEEE
Q 014342           19 ILVPVRFIWPN---GGRRVSLSGS---FTRWSEP--MPMSPSE--GCPAVFQIICRLPPGH-HQYKFYV   76 (426)
Q Consensus        19 ~~~~v~f~~~~---~~~~V~l~Gs---f~~W~~~--~~m~~~~--~~~~~~~~~~~L~~g~-y~ykFiV   76 (426)
                      ..+.|+|+...   .++.|+|+|+   +.+|++.  ++|.+.+  .....|++++.||+|. +||||++
T Consensus         7 ~~v~V~F~v~~~~~~ge~v~vvGs~~~LG~W~p~~av~L~~~~~~~~~~~W~~~v~lp~~~~~eYKyvi   75 (131)
T 2z0b_A            7 GPSQVAFEIRGTLLPGEVFAICGSCDALGNWNPQNAVALLPENDTGESMLWKATIVLSRGVSVQYRYFK   75 (131)
T ss_dssp             CCEEEEEEEECCCCTTCEEEEEESSGGGTTTCGGGCEECEECCTTCCSSEEEEEEEECTTCCEEEEEEE
T ss_pred             CeEEEEEEEeeecCCCCEEEEEeCCCcCCCCCccccccccccccCCCCCeEEEEEEcCCCCcEEEEEEE
Confidence            56788888875   3799999999   8999974  5888762  1378999999999985 9999998

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=98.37  E-value=5e-07  Score=83.86  Aligned_cols=51  Identities=37%  Similarity=0.509  Sum_probs=47.6

Q ss_pred             CCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHhc
Q 014342          349 RPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  399 (426)
Q Consensus       349 ~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~~  399 (426)
                      ++++++.+++++.+|+++|.+++++++||+|++|+++|+||..||++.+..
T Consensus        15 ~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~~~l~Giit~~di~~~~~~   65 (245)
T 3l2b_A           15 DKIAPLAPEVSLKMAWNIMRDKNLKSIPVADGNNHLLGMLSTSNITATYMD   65 (245)
T ss_dssp             BCCCCBCTTCBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHHHHHHC
T ss_pred             CCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHH
Confidence            577889999999999999999999999999999999999999999987754

>1ac0_A Glucoamylase; hydrolase, starch binding domain; HET: GLC BGC GLO; NMR {Aspergillus niger} SCOP: b.3.1.1 PDB: 1acz_A* 1kul_A 1kum_A

Probab=98.05  E-value=2.9e-06  Score=68.73  Aligned_cols=59  Identities=25%  Similarity=0.485  Sum_probs=46.9

Q ss_pred             CcceEEEEEecC---CCceEEEEecc---CCCCCC--CCCCCCCC--CCCeEEEEEecCCce-EEEEEEE
Q 014342           18 SILVPVRFIWPN---GGRRVSLSGSF---TRWSEP--MPMSPSEG--CPAVFQIICRLPPGH-HQYKFYV   76 (426)
Q Consensus        18 ~~~~~v~f~~~~---~~~~V~l~Gsf---~~W~~~--~~m~~~~~--~~~~~~~~~~L~~g~-y~ykFiV   76 (426)
                      +..+.++|+...   .|+.|+|+|+.   .+|++.  ++|.....  .++.|++++.||+|. +||||++
T Consensus         4 ~~~v~V~F~v~~~t~~Ge~v~vvGs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp~~~~~eYKy~v   73 (108)
T 1ac0_A            4 PTAVAVTFDLTATTTYGENIYLVGSISQLGDWETSDGIALSADKYTSSDPLWYVTVTLPAGESFEYKFIR   73 (108)
T ss_dssp             CCCCCEEEEEECCCCSSCCEECCCSSSTTCSSSGGGSCCBBCSSSSSSCSSCEEEECCCSSSCEECCCEE
T ss_pred             CCeEEEEEEEeeECCCCCEEEEEeCcHHHCCCCHHHCccccccccCCcCCeEEEEEEeCCCCeEEEEEEE
Confidence            345778888775   37999999986   489963  68987531  358999999999985 9999999

>3c8d_A Enterochelin esterase; alpha-beta-alpha sandwich, IROD, iron aquisition, structural genomics, PSI-2, protein structure initiative; HET: CIT; 1.80A {Shigella flexneri 2a str} SCOP: b.1.18.20 c.69.1.2 PDB: 2b20_A 3c87_A* 3c8h_A 3mga_A*

Probab=98.05  E-value=1.2e-05  Score=80.27  Aligned_cols=87  Identities=22%  Similarity=0.294  Sum_probs=65.9

Q ss_pred             cceEEEEEecCC-C-------ceEEEE--eccC---CCCCCCCCCCCCCCCCeEEEEEecCCceE-EEEEEEc-------
Q 014342           19 ILVPVRFIWPNG-G-------RRVSLS--GSFT---RWSEPMPMSPSEGCPAVFQIICRLPPGHH-QYKFYVD-------   77 (426)
Q Consensus        19 ~~~~v~f~~~~~-~-------~~V~l~--Gsf~---~W~~~~~m~~~~~~~~~~~~~~~L~~g~y-~ykFiVD-------   77 (426)
                      ....|||.|.++ |       ++|+|.  |..+   +|.+ .+|.|.++ +|+|+.++.||++-| .|.|+||       
T Consensus        29 ~~~~vtF~~~~p~a~~~~~~~~~V~~~~~~~~d~~~~~~~-~~m~r~~~-~~~W~~t~~l~~~~~~~Y~~~~~~~~~~~~  106 (403)
T 3c8d_A           29 EMFEVTFWWRDPQGSEEYSTIKRVWVYITGVTDHHQNSQP-QSMQRIAG-TDVWQWTTQLNANWRGSYCFIPTERDDIFS  106 (403)
T ss_dssp             SEEEEEEEEECTTCSTTTCCCCEEEEEETTTC-------C-CBCEECTT-SSEEEEEEEEETTCEEEEEEEEESCCSTTC
T ss_pred             CcEEEEEEeeCCCcccccCccceEEEECcCCCccccccCc-cccccCCC-CCeEEEEEEECCCcEEEEEEEecCcccccc
Confidence            356899999986 5       789998  3333   2222 47988432 899999999999999 9999999       


Q ss_pred             -----------------CeeecCCCCCeeeCC-CCCeeeEEEeccCCCC
Q 014342           78 -----------------GEWRHDENQPHVSGN-YGVVNCVYIAVPQPDM  108 (426)
Q Consensus        78 -----------------g~w~~d~~~p~~~d~-~G~~nn~~~v~~~~~~  108 (426)
                                       |..+.||.||..... .|...|++++ ..+..
T Consensus       107 ~~~~~~~~~r~~w~~~~~~~~~DP~n~~~~~~~~~~~~s~~~~-p~~~~  154 (403)
T 3c8d_A          107 APSPDRLELREGWRKLLPQAIADPLNPQSWKGGLGHAVSALEM-PQAPL  154 (403)
T ss_dssp             CC--CHHHHHHHHHHHGGGCBCCTTCSSEECCSSSSCEEEEEC-TTCCC
T ss_pred             cccchHHHHHHHHHHhhcccccCCCCCCCCCCCCCcccccccC-CCCCc
Confidence                             778899999977643 4888899999 54433

>1m7x_A 1,4-alpha-glucan branching enzyme; alpha/beta barrel, beta sandwich, transferase; 2.30A {Escherichia coli} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 3o7y_A* 3o7z_A*

Probab=97.41  E-value=0.00035  Score=73.61  Aligned_cols=68  Identities=25%  Similarity=0.541  Sum_probs=52.4

Q ss_pred             eEEEEE-ecCCCceEEEEeccCCCCC-CCCCCCCCCCCCeEEEEEe-cCCceEEEEEEE---cCee--ecCCCCCeee
Q 014342           21 VPVRFI-WPNGGRRVSLSGSFTRWSE-PMPMSPSEGCPAVFQIICR-LPPGHHQYKFYV---DGEW--RHDENQPHVS   90 (426)
Q Consensus        21 ~~v~f~-~~~~~~~V~l~Gsf~~W~~-~~~m~~~~~~~~~~~~~~~-L~~g~y~ykFiV---Dg~w--~~d~~~p~~~   90 (426)
                      ..++|+ |...|++|.|+|+|++|.. ..+|.+.. ..|+|++.++ +++|. .|+|.|   ||.+  ..||......
T Consensus        25 ~gv~F~vwAP~A~~V~L~gdfn~~~~~~~~M~~~~-~~GvW~~~v~~~~~g~-~Y~f~i~~~~g~~~~~~DPya~~~~  100 (617)
T 1m7x_A           25 TGTRFSVWAPNARRVSVVGQFNYWDGRRHPMRLRK-ESGIWELFIPGAHNGQ-LYKYEMIDANGNLRLKSDPYAFEAQ  100 (617)
T ss_dssp             EEEEEEEECSSCSCEEEEEGGGTSCTTTCBCCCCT-TTTEEEEEEETCCTTC-EEEEEEECTTSCEEEECCTTCSSEE
T ss_pred             CcEEEEEECCCCCEEEEEEEeCCCCCceeEeEECC-CCCEEEEEEcCCCCCC-EEEEEEEcCCCcEEEecCccceeec
Confidence            357786 6667999999999999975 46898632 3799999997 67787 499988   6764  6787776554

>3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A

Probab=97.36  E-value=0.00025  Score=76.23  Aligned_cols=64  Identities=20%  Similarity=0.459  Sum_probs=49.7

Q ss_pred             EEEEE-ecCCCceEEEEeccCCCCCC-CCCCCCCCCCCeEEEEEe-------cCCceEEEEEEEc---Cee--ecCCCCC
Q 014342           22 PVRFI-WPNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICR-------LPPGHHQYKFYVD---GEW--RHDENQP   87 (426)
Q Consensus        22 ~v~f~-~~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~-------L~~g~y~ykFiVD---g~w--~~d~~~p   87 (426)
                      -++|+ |...|++|+|+|+||+|... .+|.+.+  .|+|++.++       +++|.+ |||.|+   |.|  ..||-..
T Consensus        66 gv~F~vwAP~A~~V~l~gdfn~w~~~~~~m~~~~--~GvW~~~v~~~~g~~~i~~g~~-Y~y~i~~~~g~~~~~~dpya~  142 (755)
T 3aml_A           66 ATIYREWAPAAQEAQLIGEFNNWNGAKHKMEKDK--FGIWSIKISHVNGKPAIPHNSK-VKFRFRHGGGAWVDRIPAWIR  142 (755)
T ss_dssp             EEEEEEECTTCSEEEEEEGGGTTCCTTCBCEECT--TSEEEEEEECBTTBCSSCTTEE-EEEEEECTTCCCEEECCTTCS
T ss_pred             eEEEEEECCCCCEEEEEEecCCCCCceeeceeCC--CCEEEEEEcccccccCCCCCCE-EEEEEECCCCcEEecCCcchh
Confidence            46776 77779999999999999864 7998753  799999998       788874 888886   455  3577555


Q ss_pred             e
Q 014342           88 H   88 (426)
Q Consensus        88 ~   88 (426)
                      .
T Consensus       143 ~  143 (755)
T 3aml_A          143 Y  143 (755)
T ss_dssp             C
T ss_pred             e
Confidence            4

>3k1d_A 1,4-alpha-glucan-branching enzyme; mycobacterium tuberculosis H37RV, mesophilic human pathogen, RV1326C gene, glycosyl transferase; 2.33A {Mycobacterium tuberculosis}

Probab=97.34  E-value=0.0003  Score=75.05  Aligned_cols=68  Identities=31%  Similarity=0.500  Sum_probs=51.7

Q ss_pred             eEEEEE-ecCCCceEEEEeccCCCCCC-CCCCCCCCCCCeEEEEEe-cCCceEEEEEEE---cCee--ecCCCCCeee
Q 014342           21 VPVRFI-WPNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICR-LPPGHHQYKFYV---DGEW--RHDENQPHVS   90 (426)
Q Consensus        21 ~~v~f~-~~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~-L~~g~y~ykFiV---Dg~w--~~d~~~p~~~   90 (426)
                      .-++|+ |...|++|.|+|+||+|+.. .+|.+.. ..|+|++.++ +.+|. .|||.|   ||.+  ..||-.....
T Consensus       136 ~g~~F~vwAP~A~~V~l~gdfn~w~~~~~~m~~~~-~~GvW~~~i~~~~~g~-~Y~y~i~~~~g~~~~~~DPya~~~~  211 (722)
T 3k1d_A          136 SGVSFAVWAPNAKGVSLIGEFNGWNGHEAPMRVLG-PSGVWELFWPDFPCDG-LYKFRVHGADGVVTDRADPFAFGTE  211 (722)
T ss_dssp             EEEEEEEECTTCSEEEEEEGGGTTCCCSCBCEECG-GGCEEEEEEETCCTTC-EEEEEEECTTSCEEEECCTTCSSBC
T ss_pred             ceEEEEEECCCCCEEEEEeecCCCCCCcccCEEcC-CCCEEEEEeCCCCCCC-EEEEEEEcCCCcEEEeecccceeec
Confidence            346776 66779999999999999864 6898753 2599999987 78885 578887   5654  6787766543

>2laa_A Beta/alpha-amylase; SBD, CBM25, hydrolase; NMR {Paenibacillus polymyxa} PDB: 2lab_A

Probab=96.40  E-value=0.0094  Score=47.29  Aligned_cols=66  Identities=15%  Similarity=0.296  Sum_probs=49.2

Q ss_pred             eEEEEEecCCCceEEEEeccC--CCCCC--CCCCCCCCCCCeEEEEEecCCc-eEEEEEEEcC--eeecCCCCCe
Q 014342           21 VPVRFIWPNGGRRVSLSGSFT--RWSEP--MPMSPSEGCPAVFQIICRLPPG-HHQYKFYVDG--EWRHDENQPH   88 (426)
Q Consensus        21 ~~v~f~~~~~~~~V~l~Gsf~--~W~~~--~~m~~~~~~~~~~~~~~~L~~g-~y~ykFiVDg--~w~~d~~~p~   88 (426)
                      ..+++.|..+.++|+|-..+.  +|+..  ++|.+.. .++.+..+++||.| .++|+|. ||  .|-.++..-+
T Consensus         5 ~~vtiyY~~g~~~vylHyg~~~g~Wt~~~~v~M~~~~-~~gw~~~TI~l~~g~~~~~~F~-dG~~~WDNn~g~Ny   77 (104)
T 2laa_A            5 NKVTIYYKKGFNSPYIHYRPAGGSWTAAPGVKMQDAE-ISGYAKITVDIGSASQLEAAFN-DGNNNWDSNNTKNY   77 (104)
T ss_dssp             CEEEEEEECSSSSCEEEEEETTSCCCSSSCEECEEET-TTTEEEEEEECTTCSCEEEEEE-CSSSCEESTTTSCE
T ss_pred             CEEEEEEcCCCCcEEEEEcCCCCCCCcCCcccccccc-CCCeEEEEEECCCCCEEEEEEe-CCCCcCcCCCCccE
Confidence            467778878899999999986  79974  4787653 24544699999976 6999995 87  4877665433

>1qho_A Alpha-amylase; glycoside hydrolase, starch degradation; HET: MAL ABD; 1.70A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1qhp_A*

Probab=96.19  E-value=0.011  Score=62.81  Aligned_cols=58  Identities=22%  Similarity=0.505  Sum_probs=47.1

Q ss_pred             CCcceEEEEEecC-----CCceEEEEeccC---CCCC--------CC-CCCCCCCCCCeEEEEEecCCce-EEEEEEE
Q 014342           17 GSILVPVRFIWPN-----GGRRVSLSGSFT---RWSE--------PM-PMSPSEGCPAVFQIICRLPPGH-HQYKFYV   76 (426)
Q Consensus        17 ~~~~~~v~f~~~~-----~~~~V~l~Gsf~---~W~~--------~~-~m~~~~~~~~~~~~~~~L~~g~-y~ykFiV   76 (426)
                      ....+.|+|+..+     .|++|+|+|+-.   +|++        .+ +|...+  ...|++++.||+|. +||||++
T Consensus       578 ~~~~v~v~F~v~~~~t~~~G~~l~v~G~~~~LG~W~~~~~~~~~~a~~~l~~~~--~~~W~~~v~l~~~~~~eyKy~~  653 (686)
T 1qho_A          578 SGTQTSVVFTVKSAPPTNLGDKIYLTGNIPELGNWSTDTSGAVNNAQGPLLAPN--YPDWFYVFSVPAGKTIQFKFFI  653 (686)
T ss_dssp             SSSEEEEEEEEESCCCCCTTCEEEEEESSGGGTTTCCCCSSCSSCCBCCCBCTT--TTSEEEEEEEETTCEEEEEEEE
T ss_pred             CCCeEEEEEEEecccCCCCCCEEEEEeChHHhCCCCCccccchhhhhcccccCC--CCcEEEEEEeCCCCeEEEEEEE
Confidence            3467888888865     478999999986   7998        34 777643  67999999999985 9999998

>3vgf_A Malto-oligosyltrehalose trehalohydrolase; alpha/beta barrel, alpha-amylas hydrolase; HET: GLC FLC; 2.30A {Sulfolobus solfataricus} PDB: 3vge_A* 3vgd_A* 3vgb_A* 1eh9_A* 3vgh_A* 3vgg_A* 1eha_A

Probab=96.02  E-value=0.0042  Score=64.50  Aligned_cols=62  Identities=21%  Similarity=0.227  Sum_probs=50.1

Q ss_pred             EEEEE-ecCCCceEEEEeccCCCCCCCCCCCCCCCCCeEEEEEe-cCCceEEEEEEEcCe-eecCCCCCee
Q 014342           22 PVRFI-WPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDGE-WRHDENQPHV   89 (426)
Q Consensus        22 ~v~f~-~~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~-L~~g~y~ykFiVDg~-w~~d~~~p~~   89 (426)
                      -++|+ |...|++|.|++.|+   ..++|.+.+  +|+|++.++ +.+|. .|+|.|||. ...||.....
T Consensus        10 ~~~f~vwap~a~~v~l~~~~~---~~~~m~~~~--~g~w~~~~~~~~~g~-~Y~~~~~~~~~~~DP~~~~~   74 (558)
T 3vgf_A           10 EVIFTLWAPYQKSVKLKVLEK---GLYEMERDE--KGYFTITLNNVKVRD-RYKYVLDDASEIPDPASRYQ   74 (558)
T ss_dssp             EEEEEEECTTCSCCEEEETTT---EEEECEECT--TCEEEEEESSCCTTC-EEEEECTTSCEECCTTCSCC
T ss_pred             cEEEEEECCCCCEEEEEEecC---ceeecccCC--CCEEEEEECCCCCCC-EEEEEEeCCccccCcchhhc
Confidence            46676 666799999999997   457998864  799999997 78885 699999996 7888876543

>1bf2_A Isoamylase; hydrolase, glycosidase, debranching enzyme; 2.00A {Pseudomonas amyloderamosa} SCOP: b.1.18.2 b.71.1.1 c.1.8.1

Probab=95.97  E-value=0.0052  Score=66.11  Aligned_cols=55  Identities=16%  Similarity=0.281  Sum_probs=43.9

Q ss_pred             EEEE-ecCCCceEEEEeccCCCCC-----CCCCCCCCCCCCeEEEEEe-cC------CceEEEEEEEcCee
Q 014342           23 VRFI-WPNGGRRVSLSGSFTRWSE-----PMPMSPSEGCPAVFQIICR-LP------PGHHQYKFYVDGEW   80 (426)
Q Consensus        23 v~f~-~~~~~~~V~l~Gsf~~W~~-----~~~m~~~~~~~~~~~~~~~-L~------~g~y~ykFiVDg~w   80 (426)
                      ++|+ |...|++|.|++ |++|..     .++|.+..  .|+|++.++ +.      +|.|.|+|.|+|.|
T Consensus        18 ~~F~vwap~A~~V~l~l-~~~~~~~~~~~~~~m~~~~--~gvW~~~v~~~~~~~~~~~g~y~Y~y~v~g~~   85 (750)
T 1bf2_A           18 ITFRVYSSQATRIVLYL-YSAGYGVQESATYTLSPAG--SGVWAVTVPVSSIKAAGITGAVYYGYRAWGPN   85 (750)
T ss_dssp             EEEEEECSSCSEEEEEE-ESSSSSCCCSEEEECEECS--TTEEEEEEEHHHHHHTTCCSCCEEEEEEEBTT
T ss_pred             EEEEEECCCCCEEEEEE-EccCCCCccceEEecccCC--CCEEEEEECCcccccccCCCCEEEEEEEEeee
Confidence            6776 666799999999 987653     36787653  699999986 66      89999999999753

>1cyg_A Cyclodextrin glucanotransferase; glycosyltransferase; 2.50A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1

Probab=95.78  E-value=0.018  Score=61.26  Aligned_cols=59  Identities=25%  Similarity=0.439  Sum_probs=47.0

Q ss_pred             CcceEEEEEecC----CCceEEEEeccC---CCCCC--C-CCCCCC-CCCCeEEEEEecCCc-eEEEEEEE
Q 014342           18 SILVPVRFIWPN----GGRRVSLSGSFT---RWSEP--M-PMSPSE-GCPAVFQIICRLPPG-HHQYKFYV   76 (426)
Q Consensus        18 ~~~~~v~f~~~~----~~~~V~l~Gsf~---~W~~~--~-~m~~~~-~~~~~~~~~~~L~~g-~y~ykFiV   76 (426)
                      ...++|+|+...    .|+.|+|+|+-.   +|++.  + +|.... .....|++++.||+| .+||||++
T Consensus       577 ~~~v~v~f~v~~~~~~~ge~v~v~G~~~~LG~W~~~~a~~~l~~~~~~~~~~W~~~v~lp~~~~~eyK~v~  647 (680)
T 1cyg_A          577 NDQVSVRFVVNNATTNLGQNIYIVGNVYELGNWDTSKAIGPMFNQVVYSYPTWYIDVSVPEGKTIEFKFIK  647 (680)
T ss_dssp             SCEEEEEEEEESCCCCSSCEEEEEESSGGGBTTCGGGCBCCCBCSSSSCTTCEEEEEEEESSCEEEEEEEE
T ss_pred             CCeEEEEEEEeeccCCCCCEEEEEeCcHHhCCCChhhhhhhhccccCCCCCcEEEEEEeCCCCcEEEEEEE
Confidence            357889999865    389999999887   89974  5 677610 136799999999988 59999997

>2wsk_A Glycogen debranching enzyme; carbohydrate metabolism, hydrolase, glycosidase, ISO-amylase glycosyl hydrolase, glycogen metabolism; 2.25A {Escherichia coli k-12}

Probab=95.75  E-value=0.011  Score=62.75  Aligned_cols=54  Identities=20%  Similarity=0.330  Sum_probs=42.7

Q ss_pred             EEEEE-ecCCCceEEEEeccCCCC--CCCCCCCCCCCCCeEEEEEe-cCCceEEEEEEEcCe
Q 014342           22 PVRFI-WPNGGRRVSLSGSFTRWS--EPMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDGE   79 (426)
Q Consensus        22 ~v~f~-~~~~~~~V~l~Gsf~~W~--~~~~m~~~~~~~~~~~~~~~-L~~g~y~ykFiVDg~   79 (426)
                      -++|+ |...|++|.|++ |+++.  ..++|.+..  +|+|++.++ +.+|.+ |+|.|+|.
T Consensus        20 g~~F~vwap~A~~V~l~~-f~~~~~~~~~~m~~~~--~g~w~~~v~~~~~g~~-Y~y~v~~~   77 (657)
T 2wsk_A           20 GVNFTLFSAHAERVELCV-FDANGQEHRYDLPGHS--GDIWHGYLPDARPGLR-YGYRVHGP   77 (657)
T ss_dssp             EEEEEEECSSCSEEEEEE-ECTTCCEEEEECCEEE--TTEEEEEEETCCTTCE-EEEEEECC
T ss_pred             eEEEEEECCCCCEEEEEE-ECCCCCEEEEeCcCCC--CCEEEEEECCCCCCCE-EEEEEeee
Confidence            47776 666799999999 98765  247898643  799999985 778876 99999983

>1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase; 2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A* 1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A* 1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A

Probab=95.71  E-value=0.0092  Score=62.31  Aligned_cols=60  Identities=12%  Similarity=0.047  Sum_probs=46.4

Q ss_pred             CcceEEEEE-ecCCCceEEE-EeccCCCCC----CCCCCCCC--CCCCeEEEEEecCCceEEEEEEEc
Q 014342           18 SILVPVRFI-WPNGGRRVSL-SGSFTRWSE----PMPMSPSE--GCPAVFQIICRLPPGHHQYKFYVD   77 (426)
Q Consensus        18 ~~~~~v~f~-~~~~~~~V~l-~Gsf~~W~~----~~~m~~~~--~~~~~~~~~~~L~~g~y~ykFiVD   77 (426)
                      ...+.++|+ |.+.+++|.| +|+|++|+.    ..+|.+..  +..|+|++.++.....+.|||.|.
T Consensus        20 ~~~~~i~~~~~~~~a~~V~l~~~d~~~~~~~~~~~~~m~~~~~~~~~~~w~~~i~~~~~~~~Y~f~i~   87 (585)
T 1wzl_A           20 ETQLRVRLRAKKGDVVRCEVLYADRYASPEEELAHALAGKAGSDERFDYFEALLECSTKRVKYVFLLT   87 (585)
T ss_dssp             TTEEEEEEEEETTTCSEEEEEEECTTCCTTSCCEEEECEEEEECSSEEEEEEEEECTTSCEEEEEEEE
T ss_pred             CCEEEEEEEECCCCccEEEEEECCCcCCCCCceEEEEEEEeecCCCEEEEEEEEECCCCeEEEEEEEE
Confidence            456677775 6667999999 899999975    36898753  123579999998877899999985

>2vn4_A Glucoamylase; hydrolase, carbohydrate binding, glycoside hydrolase family 15, amyloglucosidase; HET: MAN NAG BTB; 1.85A {Hypocrea jecorina} PDB: 2vn7_A*

Probab=95.69  E-value=0.029  Score=58.61  Aligned_cols=58  Identities=21%  Similarity=0.308  Sum_probs=46.4

Q ss_pred             cceEEEEEecC---CCceEEEEeccC---CCCCC--CCCCCCCC--CCCeEEEEEecCCce-EEEEEEE
Q 014342           19 ILVPVRFIWPN---GGRRVSLSGSFT---RWSEP--MPMSPSEG--CPAVFQIICRLPPGH-HQYKFYV   76 (426)
Q Consensus        19 ~~~~v~f~~~~---~~~~V~l~Gsf~---~W~~~--~~m~~~~~--~~~~~~~~~~L~~g~-y~ykFiV   76 (426)
                      ..+.++|+..+   .|++|+|+|+-.   +|++.  ++|...+-  ++..|+.++.||+|. +||||+|
T Consensus       495 ~~v~v~F~v~~~t~~Ge~l~vvGs~~~LG~W~~~~a~~L~~~~~t~~~~~W~~~v~lp~~~~~eYKyvv  563 (599)
T 2vn4_A          495 TSVAVTFHELVSTQFGQTVKVAGNAAALGNWSTSAAVALDAVNYADNHPLWIGTVNLEAGDVVEYKYIN  563 (599)
T ss_dssp             SEEEEEEEEECCCCTTCEEEEEESSGGGTTTCTTTSEECBCTTCBTTBCEEEEEEEEETTCEEEEEEEE
T ss_pred             CeEEEEEEEeEEcCCCCEEEEEecccCCCCcChhheeecccccCCCCCCcEEEEEEcCCCCcEEEEEEE
Confidence            45788898876   389999999886   89974  57886531  137999999999985 9999998

>2vr5_A Glycogen operon protein GLGX; hydrolase, glycosidase, glycosyl hydrolase, glycogen debraching; HET: GLC A16; 2.8A {Sulfolobus solfataricus} PDB: 2vnc_A* 2vuy_A

Probab=95.59  E-value=0.015  Score=62.20  Aligned_cols=55  Identities=18%  Similarity=0.415  Sum_probs=42.8

Q ss_pred             EEEEE-ecCCCceEEEEeccCCCCC-----CCCCCCCCCCCCeEEEEEe-cCCceEEEEEEEcCee
Q 014342           22 PVRFI-WPNGGRRVSLSGSFTRWSE-----PMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDGEW   80 (426)
Q Consensus        22 ~v~f~-~~~~~~~V~l~Gsf~~W~~-----~~~m~~~~~~~~~~~~~~~-L~~g~y~ykFiVDg~w   80 (426)
                      -+.|+ |...|++|.|++ |+++..     .++|.+..  .|+|.+.++ +.+|.+ |+|.|+|.|
T Consensus        30 g~~F~vwap~A~~V~l~l-f~~~~~~~~~~~~~m~~~~--~gvw~~~v~~~~~g~~-Y~y~v~g~~   91 (718)
T 2vr5_A           30 GVNFSLFSENAEKVELLL-YSLTNQKYPKEIIEVKNKT--GDIWHVFVPGLRPGQL-YAYRVYGPY   91 (718)
T ss_dssp             EEEEEEECSSCSEEEEEE-CCSSCCSSCSEEEEECEES--SSEEEEEEETCCTTCE-EEEEEECCE
T ss_pred             eEEEEEECCCCCEEEEEE-EcCCCCCCcceEEeCccCC--CCEEEEEeCCCCCCCE-EEEEEeeec
Confidence            47786 666799999999 876442     36888653  799999985 788987 999999853

>3bmv_A Cyclomaltodextrin glucanotransferase; glycosidase, thermostable, family 13 glycosyl hydrolas; 1.60A {Thermoanaerobacterium thermosulfurigenorganism_taxid} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 3bmw_A* 1ciu_A 1a47_A 1pj9_A* 1cgt_A

Probab=95.51  E-value=0.021  Score=60.78  Aligned_cols=59  Identities=27%  Similarity=0.423  Sum_probs=47.2

Q ss_pred             CcceEEEEEecC----CCceEEEEeccC---CCCCC--C-CCCCCC-CCCCeEEEEEecCCc-eEEEEEEE
Q 014342           18 SILVPVRFIWPN----GGRRVSLSGSFT---RWSEP--M-PMSPSE-GCPAVFQIICRLPPG-HHQYKFYV   76 (426)
Q Consensus        18 ~~~~~v~f~~~~----~~~~V~l~Gsf~---~W~~~--~-~m~~~~-~~~~~~~~~~~L~~g-~y~ykFiV   76 (426)
                      ...++|+|+...    .|+.|+|+||-.   +|++.  + +|.... .....|++++.||+| .+||||++
T Consensus       581 ~~~v~v~f~v~~~~~~~g~~v~v~G~~~~LG~W~~~~a~~~l~~~~~~~~~~W~~~v~lp~~~~~eyK~~~  651 (683)
T 3bmv_A          581 GNQICVRFVVNNASTVYGENVYLTGNVAELGNWDTSKAIGPMFNQVVYQYPTWYYDVSVPAGTTIQFKFIK  651 (683)
T ss_dssp             SSEEEEEEEEESCCCCTTCEEEEEESSGGGTTTCGGGCBCSCBCSSSSCTTSEEEEEEEETTCEEEEEEEE
T ss_pred             CCeEEEEEEEEeccCCCCCEEEEEeCcHHhCCCChhhhhhhhcccCCCCCCcEEEEEEeCCCCcEEEEEEE
Confidence            357889999865    389999999987   89963  5 777610 126799999999998 59999997

>2bhu_A Maltooligosyltrehalose trehalohydrolase; alpha-amylase, protein-carbohydrate complex, desiccation resistance; HET: TRS PGE; 1.1A {Deinococcus radiodurans} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 2bhy_A* 2bhz_A* 2bxy_A* 2bxz_A* 2by0_A* 2by1_A* 2by2_A* 2by3_A*

Probab=95.48  E-value=0.011  Score=61.83  Aligned_cols=62  Identities=21%  Similarity=0.362  Sum_probs=49.3

Q ss_pred             EEEEE-ecCCCceEEEEeccCCCCCCCCCCCCCCCCCeEEEEEecCCceEEEEEEEcCeeecCCCCCeee
Q 014342           22 PVRFI-WPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVS   90 (426)
Q Consensus        22 ~v~f~-~~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~L~~g~y~ykFiVDg~w~~d~~~p~~~   90 (426)
                      .++|+ |...|+.|.|+|+   + ..++|.+.+  .|+|++.+++.+|.+ |+|.|||..+.||......
T Consensus        35 ~~~f~vwap~a~~v~l~~~---~-~~~~m~~~~--~g~w~~~~~~~~g~~-Y~~~v~g~~~~DPya~~~~   97 (602)
T 2bhu_A           35 GTRFRLWTSTARTVAVRVN---G-TEHVMTSLG--GGIYELELPVGPGAR-YLFVLDGVPTPDPYARFLP   97 (602)
T ss_dssp             CEEEEEECSSCSSEEEEET---T-EEEECEEEE--TTEEEEEESCCTTCE-EEEEETTEEECCTTCSCCT
T ss_pred             eEEEEEECCCCCEEEEEEc---C-CEEeCeeCC--CcEEEEEEECCCCcE-EEEEECCeEecCCCccccC
Confidence            57776 6667999999994   2 357898764  799999999888886 9999999777888776543

>1d3c_A Cyclodextrin glycosyltransferase; alpha-amylase, product complex, oligosaccharide, family 13 glycosyl hydrolase, transglycosylation; HET: GLC; 1.78A {Bacillus circulans} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1cxf_A* 1cxk_A* 1cdg_A* 1cxe_A* 1cxh_A* 1cxi_A* 2cxg_A* 1cgv_A* 2dij_A* 1cgy_A* 1kck_A* 1cgx_A* 1cxl_A* 1cgw_A* 1tcm_A 1kcl_A* 1eo5_A* 1eo7_A* 1dtu_A* 1ot1_A* ...

Probab=95.33  E-value=0.026  Score=60.03  Aligned_cols=59  Identities=29%  Similarity=0.443  Sum_probs=46.8

Q ss_pred             CcceEEEEEecC----CCceEEEEeccC---CCCCC--C-CCCCCC-CCCCeEEEEEecCCc-eEEEEEEE
Q 014342           18 SILVPVRFIWPN----GGRRVSLSGSFT---RWSEP--M-PMSPSE-GCPAVFQIICRLPPG-HHQYKFYV   76 (426)
Q Consensus        18 ~~~~~v~f~~~~----~~~~V~l~Gsf~---~W~~~--~-~m~~~~-~~~~~~~~~~~L~~g-~y~ykFiV   76 (426)
                      ...++|+|+...    .|+.|+|+||-.   +|++.  + +|.... .....|++++.||+| .+||||++
T Consensus       584 ~~~v~v~f~v~~~~~~~g~~~~v~G~~~~LG~W~~~~a~~~l~~~~~~~~~~W~~~v~lp~~~~~eyK~~~  654 (686)
T 1d3c_A          584 GDQVSVRFVVNNATTALGQNVYLTGSVSELGNWDPAKAIGPMYNQVVYQYPNWYYDVSVPAGKTIEFKFLK  654 (686)
T ss_dssp             SSEEEEEEEEECCCCCTTCEEEEEESSGGGTTTCGGGCBCCCBCSSSSCTTCEEEEEEEETTCEEEEEEEE
T ss_pred             CCeEEEEEEEeeccCCCCCEEEEEeCcHHhCCCChhhhhhhhccccCCCCCeEEEEEEeCCCCcEEEEEEE
Confidence            357889999865    389999999887   89974  5 676510 136799999999998 59999997

>1vem_A Beta-amylase; beta-alpha-barrels, optimum PH, hydrolase; HET: GLC; 1.85A {Bacillus cereus} SCOP: b.3.1.1 c.1.8.1 PDB: 1b90_A* 1j0y_A* 1j0z_A* 1j10_A* 1b9z_A* 1j12_A* 1j18_A* 1j11_A* 5bca_A 1veo_A* 1itc_A* 1ven_A* 1vep_A* 1cqy_A

Probab=95.15  E-value=0.026  Score=57.90  Aligned_cols=60  Identities=17%  Similarity=0.274  Sum_probs=46.6

Q ss_pred             CCCcceEEEEEecC----CCceEEEEeccC---CCCCCC---CCCCCCCCCCeEEEEEecCCce-EEEEEEE
Q 014342           16 VGSILVPVRFIWPN----GGRRVSLSGSFT---RWSEPM---PMSPSEGCPAVFQIICRLPPGH-HQYKFYV   76 (426)
Q Consensus        16 ~~~~~~~v~f~~~~----~~~~V~l~Gsf~---~W~~~~---~m~~~~~~~~~~~~~~~L~~g~-y~ykFiV   76 (426)
                      -....+.++|+..+    .|++|+|+|+-.   +|++..   +|.... .++.|++++.||+|. ++|||++
T Consensus       415 Vt~~~v~V~F~v~~~~t~~Ge~v~vvGs~~eLG~W~~~~a~~~l~~~~-~p~~W~~~v~lp~~~~~eYKyv~  485 (516)
T 1vem_A          415 LGVTPVMQTIVVKNVPTTIGDTVYITGNRAELGSWDTKQYPIQLYYDS-HSNDWRGNVVLPAERNIEFKAFI  485 (516)
T ss_dssp             TSCCEEEEEEEEESCCCCTTCEEEEEESSGGGTTTCSSSSCEECEEET-TTTEEEEEEEEETTCCEEEEEEE
T ss_pred             cccCccceEEEEeeccCCCCCEEEEEeChhhhCCCChhhhceecccCC-CCCEEEEEEEECCCCcEEEEEEE
Confidence            34567889999764    389999999886   799852   565522 245999999999985 9999998

>1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A*

Probab=95.14  E-value=0.011  Score=61.71  Aligned_cols=62  Identities=21%  Similarity=0.245  Sum_probs=47.6

Q ss_pred             CCCcceEEEEE-ecCCCceEEE-EeccCCCCC------CCCCCCCC--CCCCeEEEEEecCCceEEEEEEEc
Q 014342           16 VGSILVPVRFI-WPNGGRRVSL-SGSFTRWSE------PMPMSPSE--GCPAVFQIICRLPPGHHQYKFYVD   77 (426)
Q Consensus        16 ~~~~~~~v~f~-~~~~~~~V~l-~Gsf~~W~~------~~~m~~~~--~~~~~~~~~~~L~~g~y~ykFiVD   77 (426)
                      .....+.++|+ |.+.+++|.| +|+|++|+.      ..+|.+.+  +..|+|++.++.....+.|+|.|.
T Consensus        18 ~~~~~~~i~~~~~~~~a~~V~l~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~w~~~v~~~~~~~~Y~f~i~   89 (588)
T 1j0h_A           18 YDSETLHLRLRTKKDDIDRVELLHGDPYDWQNGAWQFQMMPMRKTGSDELFDYWFAEVKPPYRRLRYGFVLY   89 (588)
T ss_dssp             SSSSCEEEEEEEETTTCSEEEEEEECTTCEETTEECCEEEECEEEEECSSEEEEEEEECCTTSCEEEEEEEE
T ss_pred             cCCCEEEEEEEECCCCccEEEEEECCCCCccccccceEEEEeEEeecCCCeEEEEEEEECCCcEEEEEEEEE
Confidence            34567788886 6667999999 799999965      46898753  124579999998777889999885

>2e8y_A AMYX protein, pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, HY; 2.11A {Bacillus subtilis} PDB: 2e8z_A* 2e9b_A*

Probab=94.50  E-value=0.039  Score=58.98  Aligned_cols=65  Identities=22%  Similarity=0.345  Sum_probs=47.8

Q ss_pred             EEEEE-ecCCCceEEEEeccCCCCC-CCCCCCCCCCCCeEEEEEe-cCCceEEEEEEEc--Cee--ecCCCCCee
Q 014342           22 PVRFI-WPNGGRRVSLSGSFTRWSE-PMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVD--GEW--RHDENQPHV   89 (426)
Q Consensus        22 ~v~f~-~~~~~~~V~l~Gsf~~W~~-~~~m~~~~~~~~~~~~~~~-L~~g~y~ykFiVD--g~w--~~d~~~p~~   89 (426)
                      .++|+ |...|+.|.|++.|++|.. .++|.+.+  .|+|++.++ +.+|. .|+|.|+  |.|  ..||.....
T Consensus       114 ~~~f~vwap~a~~V~l~~~~~~~~~~~~~m~~~~--~g~w~~~v~~~~~g~-~Y~f~v~~~g~~~~~~DPya~~~  185 (718)
T 2e8y_A          114 HTVFKVWAPAATSAAVKLSHPNKSGRTFQMTRLE--KGVYAVTVTGDLHGY-EYLFCICNNSEWMETVDQYAKAV  185 (718)
T ss_dssp             EEEEEEECTTCSEEEEEEECTTSCCEEEECEECG--GGEEEEEEESCCTTC-EEEEEEEETTEEEEECCTTCSSB
T ss_pred             cEEEEEECCCCCEEEEEEEcCCCcceEEeCccCC--CCEEEEEECCCCCCC-eEEEEEEeCCeEEEecCCccccc
Confidence            46776 6667999999999998875 36898764  699999987 45563 5666664  764  578876543

>2fhf_A Pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, complex with maltotetraose, hydrolase; HET: GLC; 1.65A {Klebsiella aerogenes} SCOP: b.1.18.2 b.1.18.2 b.3.1.3 b.71.1.1 c.1.8.1 PDB: 2fh6_A* 2fh8_A* 2fhb_A* 2fhc_A* 2fgz_A*

Probab=93.83  E-value=0.057  Score=60.13  Aligned_cols=67  Identities=18%  Similarity=0.198  Sum_probs=49.0

Q ss_pred             EEEEE-ecCCCceEEEEe-ccCCCCC-CCCCCCCCCCCCeEEEEEe-cCCceEEEEEEEc------C----eeecCCCCC
Q 014342           22 PVRFI-WPNGGRRVSLSG-SFTRWSE-PMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVD------G----EWRHDENQP   87 (426)
Q Consensus        22 ~v~f~-~~~~~~~V~l~G-sf~~W~~-~~~m~~~~~~~~~~~~~~~-L~~g~y~ykFiVD------g----~w~~d~~~p   87 (426)
                      -+.|+ |...|++|.|++ +|++|.. .++|.+.. ..|+|++.++ +.+|.+ |+|.|+      |    ....||...
T Consensus       305 gv~F~vwAP~A~~V~L~l~d~~~~~~~~~~m~~~~-~~GvW~~~v~~~~~G~~-Y~y~v~~~~p~~g~~~~~~~~DPYa~  382 (1083)
T 2fhf_A          305 GVTFRVWAPTAQQVELVIYSADKKVIASHPMTRDS-ASGAWSWQGGSDLKGAF-YRYAMTVYHPQSRKVEQYEVTDPYAH  382 (1083)
T ss_dssp             EEEEEEECTTCSEEEEEEECTTCCEEEEEECEECT-TTCEEEEEECGGGTTCE-EEEEEEEEETTTTEEEEEEECCTTCS
T ss_pred             eEEEEEECCCCCEEEEEEEcCCCCccceEECeECC-CCCEEEEEECCCCCCCE-EEEEEEeecCCCCccccceecCCccc
Confidence            36777 677799999999 9999975 46898543 3699999985 677865 777775      3    246777765


Q ss_pred             eee
Q 014342           88 HVS   90 (426)
Q Consensus        88 ~~~   90 (426)
                      ...
T Consensus       383 ~~~  385 (1083)
T 2fhf_A          383 SLS  385 (1083)
T ss_dssp             CBC
T ss_pred             eec
Confidence            544

>3faw_A Reticulocyte binding protein; TIM barrel, beta barrel, hydrolase, cell WALL, peptidoglycan-anchor, secreted; 2.10A {Streptococcus agalactiae COH1} PDB: 3fax_A*

Probab=93.03  E-value=0.048  Score=59.39  Aligned_cols=65  Identities=15%  Similarity=0.197  Sum_probs=48.8

Q ss_pred             EEEE-ecCCCceEEEEe-ccCCCCC---CCCCCCCCCCCCeEEEEEecCCce-----EEEEEEEcC--e--eecCCCCCe
Q 014342           23 VRFI-WPNGGRRVSLSG-SFTRWSE---PMPMSPSEGCPAVFQIICRLPPGH-----HQYKFYVDG--E--WRHDENQPH   88 (426)
Q Consensus        23 v~f~-~~~~~~~V~l~G-sf~~W~~---~~~m~~~~~~~~~~~~~~~L~~g~-----y~ykFiVDg--~--w~~d~~~p~   88 (426)
                      +.|+ |...|++|.|++ ++++|..   .++|.+..  +|+|++.+.+.||.     +.|+|.|++  .  ...||....
T Consensus       146 v~F~vwAP~A~~V~L~l~d~~~~~~~~~~~~m~~~~--~gvW~~~v~~~~G~~~~~g~~Y~yrv~~~~~~~~~~DPYA~~  223 (877)
T 3faw_A          146 VEASLWSPSADSVTMIIYDKDNQNRVVATTPLVKNN--KGVWQTILDTKLGIKNYTGYYYLYEIKRGKDKVKILDPYAKS  223 (877)
T ss_dssp             EEEEEECTTCSEEEEEEEETTEEEEEEEEEECEECT--TSEEEEEECGGGTCSCCTTCEEEEEEEETTEEEEECCTTCSC
T ss_pred             EEEEEECCCCCEEEEEEEeCCCCccceeeeccccCC--CCEEEEEECCCCCCccCCCeEEEEEEeeCCceeEecCcccee
Confidence            6777 666799999998 7888853   47898753  79999999776762     678888863  3  578887754


Q ss_pred             e
Q 014342           89 V   89 (426)
Q Consensus        89 ~   89 (426)
                      +
T Consensus       224 ~  224 (877)
T 3faw_A          224 L  224 (877)
T ss_dssp             B
T ss_pred             c
Confidence            4

>2ya0_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; 1.85A {Streptococcus pneumoniae} PDB: 2ya2_A*

Probab=92.75  E-value=0.12  Score=55.03  Aligned_cols=65  Identities=14%  Similarity=0.264  Sum_probs=47.7

Q ss_pred             EEEE-ecCCCceEEEEe-ccCCCCC---CCCCCCCCCCCCeEEEEEecC--Cc-----eEEEEEEEc--Ce--eecCCCC
Q 014342           23 VRFI-WPNGGRRVSLSG-SFTRWSE---PMPMSPSEGCPAVFQIICRLP--PG-----HHQYKFYVD--GE--WRHDENQ   86 (426)
Q Consensus        23 v~f~-~~~~~~~V~l~G-sf~~W~~---~~~m~~~~~~~~~~~~~~~L~--~g-----~y~ykFiVD--g~--w~~d~~~   86 (426)
                      +.|+ |...|++|.|++ +|++|..   .++|.+..  .|+|++.++-.  +|     -+.|+|.|+  |.  ...||..
T Consensus        26 v~F~vwap~A~~V~l~l~~~~~~~~~~~~~~m~~~~--~gvW~~~v~~~~~~g~~~~~g~~Y~y~v~~~~~~~~~~DPya  103 (714)
T 2ya0_A           26 VDLTLWSPSADKVSVVVYDKNDPDKVVGTVALEKGE--RGTWKQTLDSTNKLGITDFTGYYYQYQIERQGKTVLALDPYA  103 (714)
T ss_dssp             EEEEEECTTCSEEEEEEECSSCTTSEEEEEECEECG--GGEEEEEECTTCSSSCSCCTTCEEEEEEEETTEEEEECCTTC
T ss_pred             EEEEEECCCCCEEEEEEEeCCCCCccceEEeCccCC--CCEEEEEECCccCCCccccCCcEEEEEEEeCCceEEecCCce
Confidence            6776 777799999999 8988864   47898743  69999998741  34     267888886  53  4678876


Q ss_pred             Cee
Q 014342           87 PHV   89 (426)
Q Consensus        87 p~~   89 (426)
                      ..+
T Consensus       104 ~~~  106 (714)
T 2ya0_A          104 KSL  106 (714)
T ss_dssp             SEE
T ss_pred             eee
Confidence            543

>1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1 c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A* 1qi4_A* 2amg_A 1qpk_A*

Probab=92.61  E-value=0.022  Score=58.68  Aligned_cols=58  Identities=22%  Similarity=0.415  Sum_probs=0.0

Q ss_pred             CcceEEEEEe-cC---CCceEEEEeccC---CCCCC--CCCCCCCCCCCeEEEEEecCCc-eEEEEEEE
Q 014342           18 SILVPVRFIW-PN---GGRRVSLSGSFT---RWSEP--MPMSPSEGCPAVFQIICRLPPG-HHQYKFYV   76 (426)
Q Consensus        18 ~~~~~v~f~~-~~---~~~~V~l~Gsf~---~W~~~--~~m~~~~~~~~~~~~~~~L~~g-~y~ykFiV   76 (426)
                      ...++|+|+. .+   .|++|+|+||-.   +|++.  ++|.... ....|++++.||+| .+||||+|
T Consensus       428 ~~~v~v~F~v~~~~t~~G~~v~v~G~~~~LG~W~~~~a~~l~~~~-~~~~W~~~v~lp~~~~~eyKy~~  495 (527)
T 1gcy_A          428 GALVSVSFRCDNGATQMGDSVYAVGNVSQLGNWSPAAALRLTDTS-GYPTWKGSIALPAGQNEEWKCLI  495 (527)
T ss_dssp             ---------------------------------------------------------------------
T ss_pred             CCEEEEEEEEecccCCCCCeEEEEcChhHhCCCCcccCccCccCC-CCCeEEEEEEeCCCCcEEEEEEE
Confidence            3468889987 33   389999999987   79973  6887321 25789999999998 49999997

>4aio_A Limit dextrinase; hydrolase, pullulanase, glycoside hydrolase family 13; 1.90A {Hordeum vulgare} PDB: 2x4c_A* 2y4s_A* 2y5e_A* 2x4b_A

Probab=92.35  E-value=0.09  Score=57.29  Aligned_cols=53  Identities=15%  Similarity=0.090  Sum_probs=37.9

Q ss_pred             EEEE-ecCCCceEEEEeccCCCCCCC--CCCCCCCCCCeEEEEEe-cCCceEEEEEEEcC
Q 014342           23 VRFI-WPNGGRRVSLSGSFTRWSEPM--PMSPSEGCPAVFQIICR-LPPGHHQYKFYVDG   78 (426)
Q Consensus        23 v~f~-~~~~~~~V~l~Gsf~~W~~~~--~m~~~~~~~~~~~~~~~-L~~g~y~ykFiVDg   78 (426)
                      |+|+ |...|++|.|++-+++|.+..  .|.+.  .+|+|++.++ +.+|. .|+|.|+|
T Consensus       138 ~~F~vwAp~A~~V~l~l~~~~~~~~~~~~~~~~--~~g~W~~~~~~~~~g~-~Y~y~v~~  194 (884)
T 4aio_A          138 VSLHLWAPTAQGVSVCFFDGPAGPALETVQLKE--SNGVWSVTGPREWENR-YYLYEVDV  194 (884)
T ss_dssp             EEEEEECTTCSEEEEEEESTTTSCEEEEEECEE--ETTEEEEEEEGGGTTC-EEEEEEEE
T ss_pred             EEEEEECCCCCEEEEEEEeCCCCCeeeeeeecC--CCCEEEEEECCCCCCC-EEEEEEeC
Confidence            6787 777799999999666665532  23332  3799999986 56665 48888865

>1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP} SCOP: b.1.18.2 b.71.1.1 c.1.8.1

Probab=92.14  E-value=0.026  Score=58.83  Aligned_cols=61  Identities=16%  Similarity=0.206  Sum_probs=45.6

Q ss_pred             CCcceEEEEE-ecCCCceEEE-EeccCCCCC---CCCCCCCCC--CCCeEEEEEecCCceEEEEEEEc
Q 014342           17 GSILVPVRFI-WPNGGRRVSL-SGSFTRWSE---PMPMSPSEG--CPAVFQIICRLPPGHHQYKFYVD   77 (426)
Q Consensus        17 ~~~~~~v~f~-~~~~~~~V~l-~Gsf~~W~~---~~~m~~~~~--~~~~~~~~~~L~~g~y~ykFiVD   77 (426)
                      ....+.++|+ |.+.+++|.| +|+|++|..   ..+|.+...  ..|+|++.++.....+.|||.|.
T Consensus        19 ~~~~~~~~~~~~~~~a~~V~l~~~d~~~~~~~~~~~~M~~~~~~~~~~~w~~~i~~~~~~~~Y~f~i~   86 (583)
T 1ea9_C           19 NGTTVHLRIRTKKDDMTAVYALAGDKYMWDHTMEYVPMTKLATDELFDYWECEVTPPYRRVKYGFLLQ   86 (583)
T ss_dssp             SSSCEECCCEECTTCCSBEEEEEECSSSCTTTCEEEEECEEEECSSCEEECCEECCTTSCEEECBCCE
T ss_pred             CCCEEEEEEEECCCCccEEEEEECCCcCCCCcEEEEEEEEEeccCCeEEEEEEEECCCceEEEEEEEE
Confidence            3456667765 6667999999 799999975   368987431  24579999988777788888873

>2wan_A Pullulanase; hydrolase, glycoside hydrolase, polysaccharide, amylase, starch, carbohydrate; 1.65A {Bacillus acidopullulyticus}

Probab=92.05  E-value=0.11  Score=56.95  Aligned_cols=63  Identities=16%  Similarity=0.244  Sum_probs=45.3

Q ss_pred             EEEEE-ecCCCceEEEEeccCCCC----CCCCCCCCCCCCCeEEEEEe-cCCceEEEEEEE--cCe--eecCCCCCe
Q 014342           22 PVRFI-WPNGGRRVSLSGSFTRWS----EPMPMSPSEGCPAVFQIICR-LPPGHHQYKFYV--DGE--WRHDENQPH   88 (426)
Q Consensus        22 ~v~f~-~~~~~~~V~l~Gsf~~W~----~~~~m~~~~~~~~~~~~~~~-L~~g~y~ykFiV--Dg~--w~~d~~~p~   88 (426)
                      -++|+ |...|+.|.|++ |++|.    ..++|.+.+  .|+|++.++ +.+|. .|+|.|  +|.  ...||....
T Consensus       326 gv~F~vwaP~A~~V~l~l-f~~~~~~~~~~~~m~~~~--~gvW~~~v~~~~~g~-~Y~y~v~~~g~~~~~~DPya~~  398 (921)
T 2wan_A          326 ATSFRVWAPTASNVQLLL-YNSEKGSITKQLEMQKSD--NGTWKLQVSGNLENW-YYLYQVTVNGTTQTAVDPYARA  398 (921)
T ss_dssp             EEEEEEECTTCSEEEEEE-ESSSSSCCSEEEECEECG--GGEEEEEEESCCTTC-EEEEEEECSSCEEEECCTTCSS
T ss_pred             eEEEEEECCCCCEEEEEE-EeCCCCCcCeEEeCeeCC--CCEEEEEEccCCCCC-EEEEEEEeCCeEEEecCCccee
Confidence            46676 566699999997 99995    247898754  699999987 45665 366666  564  467776654

>3m07_A Putative alpha amylase; IDP00968, csgid, structural genomics, center for structural genomics of infectious diseases, unknown function; HET: BTB PG4 PGE; 1.40A {Salmonella enterica subsp}

Probab=91.67  E-value=0.2  Score=52.49  Aligned_cols=62  Identities=24%  Similarity=0.405  Sum_probs=46.9

Q ss_pred             EEEEE-ecCCCceEEEEeccCCCCCCCCCCCCCCCCCeEEEEE-ecCCceEEEEEEEc-CeeecCCCCCeee
Q 014342           22 PVRFI-WPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIIC-RLPPGHHQYKFYVD-GEWRHDENQPHVS   90 (426)
Q Consensus        22 ~v~f~-~~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~-~L~~g~y~ykFiVD-g~w~~d~~~p~~~   90 (426)
                      -++|+ |...|++|.|++   +|.. .+|.+.+  +|+|.+.+ .+.+|. .|+|.|+ |..+.||......
T Consensus        43 ~~~F~vwap~a~~v~l~~---~~~~-~~m~~~~--~g~~~~~~~~~~~g~-~Y~y~v~~~~~~~DP~a~~~~  107 (618)
T 3m07_A           43 VVRFRLWATGQQKVMLRL---AGKD-QEMQANG--DGWFTLDVAGVTPGT-EYNFVLSDGMVVPDPASRAQK  107 (618)
T ss_dssp             EEEEEEECTTCSCEEEEE---TTEE-EECEECS--TTEEEEEEETCCTTC-EEEEEETTSCEECCTTCSCBS
T ss_pred             cEEEEEECCCCCEEEEEE---CCCc-ccCeecC--CEEEEEEeCCCCCCC-EEEEEEeCCeEeccccceeee
Confidence            36777 666799999998   3543 7898864  68999988 477786 5889995 5688898876554

>2wan_A Pullulanase; hydrolase, glycoside hydrolase, polysaccharide, amylase, starch, carbohydrate; 1.65A {Bacillus acidopullulyticus}

Probab=91.10  E-value=0.3  Score=53.63  Aligned_cols=60  Identities=27%  Similarity=0.484  Sum_probs=42.9

Q ss_pred             ceEEEEEecCCCceEEEEecc-------CCCCCCC---CCCCCCCCCCeEEEEEecCCceEEEEEEEcCeee
Q 014342           20 LVPVRFIWPNGGRRVSLSGSF-------TRWSEPM---PMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWR   81 (426)
Q Consensus        20 ~~~v~f~~~~~~~~V~l~Gsf-------~~W~~~~---~m~~~~~~~~~~~~~~~L~~g~y~ykFiVDg~w~   81 (426)
                      +++|..--...+..+.+.|+|       .+|++..   -|.+.  .+|.|+.+-.||+|.|+||+.++|.|.
T Consensus       152 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~w~p~~~~~~~~~~--~~~~y~~~~~l~~g~y~~kv~~~~~w~  221 (921)
T 2wan_A          152 KIPVTSAVSANPVTAVLVGDLQQALGAANNWSPDDDHTLLKKI--NPNLYQLSGTLPAGTYQYKIALDHSWN  221 (921)
T ss_dssp             EECEEEEEECCCCCEEEEETTSGGGTCSSSSCTTCGGGBCEEE--ETTEEEEEEEECSEEEEEEEEETTSSS
T ss_pred             cccccccccccccccccccchhhhccccccCCCCCCcceeecc--CCcceeeeeccCCcceeEEEeecCccc
Confidence            444433333345568888877       5799864   24332  278999999999999999999998774

>2ya1_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; HET: BGC GLC; 2.25A {Streptococcus pneumoniae}

Probab=88.95  E-value=0.31  Score=53.99  Aligned_cols=64  Identities=13%  Similarity=0.225  Sum_probs=45.9

Q ss_pred             EEEE-ecCCCceEEEEe-ccCCCCC---CCCCCCCCCCCCeEEEEEecC--Cc-----eEEEEEEEc--Ce--eecCCCC
Q 014342           23 VRFI-WPNGGRRVSLSG-SFTRWSE---PMPMSPSEGCPAVFQIICRLP--PG-----HHQYKFYVD--GE--WRHDENQ   86 (426)
Q Consensus        23 v~f~-~~~~~~~V~l~G-sf~~W~~---~~~m~~~~~~~~~~~~~~~L~--~g-----~y~ykFiVD--g~--w~~d~~~   86 (426)
                      +.|+ |...|+.|.|++ +|++|..   .++|.+.  ..|+|++.++-.  +|     -+.|+|.|+  |.  ...||..
T Consensus       333 v~F~vwAP~A~~V~L~l~d~~~~~~~~~~~~m~~~--~~gvW~~~v~~~~~~g~~~~~G~~Y~y~i~~~~~~~~~~DPYa  410 (1014)
T 2ya1_A          333 VDLTLWSPSADKVSVVVYDKNDPDKVVGTVALEKG--ERGTWKQTLDSTNKLGITDFTGYYYQYQIERQGKTVLALDPYA  410 (1014)
T ss_dssp             EEEEEECTTCSEEEEEEECSSCTTSEEEEEECEEC--GGGEEEEEECTTCSSCCSCCTTCEEEEEEEETTEEEEECCTTC
T ss_pred             EEEEEECCCCCEEEEEEEECCCCCccceEEecccC--CCCEEEEEEcccccCCccccCCcEEEEEEEeCCeEEEecCccc
Confidence            6776 666799999999 8998864   4789874  379999998742  23     256777775  53  4678765


Q ss_pred             Ce
Q 014342           87 PH   88 (426)
Q Consensus        87 p~   88 (426)
                      ..
T Consensus       411 ~~  412 (1014)
T 2ya1_A          411 KS  412 (1014)
T ss_dssp             SS
T ss_pred             ee
Confidence            43

>4fch_A Outer membrane protein SUSE; starch binding, extracellular, carbohydrate-B protein; HET: GLC; 1.30A {Bacteroides thetaiotaomicron}

Probab=88.80  E-value=0.34  Score=43.73  Aligned_cols=50  Identities=16%  Similarity=0.169  Sum_probs=40.1

Q ss_pred             CceEEEEeccCCCCCC--CCCCCCCCCCCeEEEEEecCCceEEEEEEEcCeee
Q 014342           31 GRRVSLSGSFTRWSEP--MPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWR   81 (426)
Q Consensus        31 ~~~V~l~Gsf~~W~~~--~~m~~~~~~~~~~~~~~~L~~g~y~ykFiVDg~w~   81 (426)
                      .+++|++|++++|...  .+|.+....+|.|...+.|+.|. +|||.-+..|-
T Consensus        12 p~~lY~vG~~~gW~~~~~~~m~~~~~~~g~y~~~~yl~ag~-~fKf~~~~~~~   63 (221)
T 4fch_A           12 PKTMFIVGSMLDTDWKVWKPMAGVYGMDGQFYSMIYFDANS-EFKFGTKENEY   63 (221)
T ss_dssp             CSCCEEEETTTCTTSCCEEECEECTTCTTEEEEEEEECTTE-EEEEESSTTCC
T ss_pred             cceEEEEecCCCCCCCccceeeeccCCCceEEEEEEEcCCC-eEEEeeccCcc
Confidence            6789999999988743  57877665689999999998775 89999776553

>1ji1_A Alpha-amylase I; beta/alpha barrel, hydrolase; 1.60A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1uh3_A* 2d0f_A* 1izj_A 1uh4_A* 1uh2_A* 2d0g_A* 2d0h_A* 1izk_A

Probab=88.16  E-value=0.4  Score=50.31  Aligned_cols=56  Identities=13%  Similarity=0.146  Sum_probs=40.7

Q ss_pred             EEEEE-e----cCCCceEEEEeccCCCCC-CCCCCC--CC--CCCCeEEEEEecCCceEEEEEEEcC
Q 014342           22 PVRFI-W----PNGGRRVSLSGSFTRWSE-PMPMSP--SE--GCPAVFQIICRLPPGHHQYKFYVDG   78 (426)
Q Consensus        22 ~v~f~-~----~~~~~~V~l~Gsf~~W~~-~~~m~~--~~--~~~~~~~~~~~L~~g~y~ykFiVDg   78 (426)
                      .|+|+ |    ...+++|.|++.|++ .. .++|.+  ..  +..|+|++.++.......|+|.|+|
T Consensus        31 ~v~f~v~~~~~ap~a~~V~l~~~~~~-~~~~~~m~~~~~~~~~~~~~w~~~i~~~~~g~~Y~f~i~~   96 (637)
T 1ji1_A           31 SVTLKLRTFKGDITSANIKYWDTADN-AFHWVPMVWDSNDPTGTFDYWKGTIPASPSIKYYRFQIND   96 (637)
T ss_dssp             CEEEEEEEETTCCSEEEEEEEETTTT-EEEEEECEEEEECTTSSEEEEEEEECCCSSCEEEEEEEEE
T ss_pred             EEEEEEEEecCcCCeeEEEEEEecCC-CEEEEEeEEeeccccCCeeEEEEEEECCCceEEEEEEEEE
Confidence            46676 5    345899999999874 32 368987  32  1347999999876666789999975

>2c3v_A Alpha-amylase G-6; carbohydrate-binding module, starch binding, carbohydrate binding, glycoside hydrolase, amylose, amylopectin; HET: TYI; 1.39A {Bacillus halodurans} PDB: 2c3v_B* 2c3w_A* 2c3x_A*

Probab=86.95  E-value=1.2  Score=34.90  Aligned_cols=63  Identities=16%  Similarity=0.448  Sum_probs=43.0

Q ss_pred             EEEEEecCCCceEEEEeccC--CCCCC--CCCCCCCCCCCeEEEEEecCCc-eEEEEEEEcC--eeecCCCC
Q 014342           22 PVRFIWPNGGRRVSLSGSFT--RWSEP--MPMSPSEGCPAVFQIICRLPPG-HHQYKFYVDG--EWRHDENQ   86 (426)
Q Consensus        22 ~v~f~~~~~~~~V~l~Gsf~--~W~~~--~~m~~~~~~~~~~~~~~~L~~g-~y~ykFiVDg--~w~~d~~~   86 (426)
                      .+++.|..+...|+|==.+.  +|...  ++|.+.. +.|.|..+|.|+.+ .++|+| -||  .|-.+...
T Consensus        11 ~vTvyY~sg~~~~ylHy~~~~g~Wt~vpgv~M~~~~-~~Gw~~~TI~~~~~~~l~~~F-~dG~~~WDNN~g~   80 (102)
T 2c3v_A           11 DITIYYKTGWTHPHIHYSLNQGAWTTLPGVPLTKSE-XEGXVKVTIEAEEGSQLRAAF-NNGSGQWDNNQGR   80 (102)
T ss_dssp             SEEEEEECCCSSCEEEEEETTCCBCCTTCEECEECS-STTEEEEEECCCTTCEEEEEE-ECSSSCEECGGGT
T ss_pred             EEEEEEcCCCCcEEEEEeCCCCCcccCCCcCccccc-cCCceEEEEecCCCceEEEEE-eCCCcccccCCCc
Confidence            34444546678888765565  48763  5787642 47889999999975 799999 555  58665443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	426
d2qlvb1	87	b.1.18.21 (B:161-247) SIP2 {Saccharomyces cerevisi	2e-25
d1z0na1	87	b.1.18.21 (A:77-163) 5'-AMP-activated protein kina	4e-25
d2ooxe1	179	d.37.1.1 (E:3-181) Uncharacterized protein C1556.0	4e-15
d2v8qe2	159	d.37.1.1 (E:23-181) 5'-AMP-activated protein kinas	4e-13
d2rc3a1	127	d.37.1.1 (A:23-149) Uncharacterized protein NE2398	1e-04
d2yzqa1	156	d.37.1.1 (A:123-278) Uncharacterized protein PH178	0.001
d1jr1a4	120	d.37.1.1 (A:113-232) Type II inosine monophosphate	0.001
d2v8qe1	145	d.37.1.1 (E:182-326) 5'-AMP-activated protein kina	0.002
d2o16a3	139	d.37.1.1 (A:20-158) Hypothetical protein VC0737 {V	0.002
d1o50a3	145	d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Th	0.003

>d2qlvb1 b.1.18.21 (B:161-247) SIP2 {Saccharomyces cerevisiae [TaxId: 4932]} Length = 87

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: AMPK-beta glycogen binding domain-like
domain: SIP2
species: Saccharomyces cerevisiae [TaxId: 4932]

 Score = 96.7 bits (240), Expect = 2e-25
 Identities = 27/82 (32%), Positives = 42/82 (51%)

Query: 18 SILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVD 77
          S++VPV   W  GG +V ++GSFT+W + + + P       F +  RL PG H+++F VD
Sbjct: 1  SLMVPVEIRWQQGGSKVYVTGSFTKWRKMIGLIPDSDNNGSFHVKLRLLPGTHRFRFIVD 60

Query: 78 GEWRHDENQPHVSGNYGVVNCV 99
           E R  +  P  +   G     
Sbjct: 61 NELRVSDFLPTATDQMGNFVNY 82

>d1z0na1 b.1.18.21 (A:77-163) 5'-AMP-activated protein kinase subunit beta-1 {Rattus norvegicus [TaxId: 10116]} Length = 87

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: AMPK-beta glycogen binding domain-like
domain: 5'-AMP-activated protein kinase subunit beta-1
species: Rattus norvegicus [TaxId: 10116]

 Score = 96.1 bits (239), Expect = 4e-25
 Identities = 40/88 (45%), Positives = 51/88 (57%), Gaps = 5/88 (5%)

Query: 21  VPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEW 80
            P  F W  GG+ V LSGSF  WS  +PM+ S+     F  I  LP G HQYKF+VDG+W
Sbjct: 2   RPTVFRWTGGGKEVYLSGSFNNWS-KLPMTRSQN---NFVAILDLPEGEHQYKFFVDGQW 57

Query: 81  RHDENQPHVSGNYGVVNCVYIAVPQPDM 108
            HD ++P V+   G VN + I V + D 
Sbjct: 58  THDPSEPIVTSQLGTVNNI-IQVKKTDF 84

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 179

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 71.2 bits (173), Expect = 4e-15
 Identities = 42/175 (24%), Positives = 80/175 (45%), Gaps = 10/175 (5%)

Query: 147 RISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLS 206
            I +F+ + T Y++LP S ++   DV L VK +  +L    +   PLWD    +F G+L+
Sbjct: 12  EIQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLT 71

Query: 207 ALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGP 266
             DF+ +++    + S               ++ K +L   R+++      P   +   P
Sbjct: 72  MADFVNVIKYYYQSSSFPEAI---------AEIDKFRLLGLREVERKIGAIPPETIYVHP 122

Query: 267 YDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSS 321
             SL +  L + +++   +P+I   G  GS   I+ + +   ILK I  + K ++
Sbjct: 123 MHSLMDACLAMSKSRARRIPLIDVDGETGSEM-IVSVLTQYRILKFISMNCKETA 176

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 64.5 bits (156), Expect = 4e-13
 Identities = 47/166 (28%), Positives = 73/166 (43%), Gaps = 18/166 (10%)

Query: 148 ISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSA 207
            ++F+ +H  Y+L+P S K+   D +L VK+AF  L   G+   PLWD  K  FVG+L+ 
Sbjct: 6   YTTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTI 65

Query: 208 LDFILILRELGTNGSNLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPY 267
            DFI IL     +      E  E    +  +V                   +PLV   P 
Sbjct: 66  TDFINILHRYYKSALVQIYELEEHKIETWREVYLQDSF-------------KPLVCISPN 112

Query: 268 DSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCI 313
            SL +    +++NK+  +P+I            LY+ +   ILK +
Sbjct: 113 ASLFDAVSSLIRNKIHRLPVIDPES-----GNTLYILTHKRILKFL 153

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

 Score = 39.7 bits (92), Expect = 1e-04
 Identities = 21/139 (15%), Positives = 45/139 (32%), Gaps = 26/139 (18%)

Query: 255 RPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCIC 314
           +     +V  GP DS+     K+  + +  + ++      G   E        D  +   
Sbjct: 9   QEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKDEKLVGILTE-------RDFSRKSY 61

Query: 315 RHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSS 374
              K                       ++ E   R  A +    +    +AL+ +  V  
Sbjct: 62  LLDKPV------------------KDTQVKEIMTRQVAYVDLNNTNEDCMALITEMRVRH 103

Query: 375 IPIVDDNDSLLDIYSRSDI 393
           +P++DD   ++ + S  D+
Sbjct: 104 LPVLDDGK-VIGLLSIGDL 121

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 156

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 37.3 bits (85), Expect = 0.001
 Identities = 14/140 (10%), Positives = 37/140 (26%), Gaps = 5/140 (3%)

Query: 259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGP-----AGSCQEILYLASLSDILKCI 313
           R +        LK     +L +    +P++ S G        +                +
Sbjct: 12  RYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVRIMKSTEL 71

Query: 314 CRHFKHSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVS 373
               +                +L      + E   R   +  P  ++      + +  + 
Sbjct: 72  AASSEEEWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIE 131

Query: 374 SIPIVDDNDSLLDIYSRSDI 393
            +P++     L+ +    D+
Sbjct: 132 QLPVIRGEGDLIGLIRDFDL 151

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 36.3 bits (83), Expect = 0.001
 Identities = 20/132 (15%), Positives = 42/132 (31%), Gaps = 23/132 (17%)

Query: 262 VQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSS 321
           V   P D +++V     ++    +PI  +               +  I        K   
Sbjct: 7   VVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRL--------VGIISSRDIDFLKEEE 58

Query: 322 SSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDN 381
               + +                        +     +L  A  +L ++    +PIV++N
Sbjct: 59  HDRFLEEIMTKR---------------EDLVVAPAGITLKEANEILQRSKKGKLPIVNEN 103

Query: 382 DSLLDIYSRSDI 393
           D L+ I +R+D+
Sbjct: 104 DELVAIIARTDL 115

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.4 bits (83), Expect = 0.002
 Identities = 20/135 (14%), Positives = 46/135 (34%), Gaps = 18/135 (13%)

Query: 259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK 318
             +        +       +Q++V+ +P++   G       ++ + S  D++        
Sbjct: 20  ANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKG------RVVDIYSKFDVINLAAEKTY 73

Query: 319 HSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIV 378
           ++            S                         +L + +  LV+A+V  + +V
Sbjct: 74  NNLDVSVTKALQHRSHYF------------EGVLKCYLHETLEAIINRLVEAEVHRLVVV 121

Query: 379 DDNDSLLDIYSRSDI 393
           D++D +  I S SDI
Sbjct: 122 DEHDVVKGIVSLSDI 136

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]} Length = 139

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

 Score = 36.4 bits (83), Expect = 0.002
 Identities = 20/135 (14%), Positives = 45/135 (33%), Gaps = 18/135 (13%)

Query: 259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK 318
           R         +L +    +    +  VPI+ +       +++L + S  D+L       +
Sbjct: 10  RHPHTLLRTHTLNDAKHLMEALDIRHVPIVDA------NKKLLGIVSQRDLLAAQESSLQ 63

Query: 319 HSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIV 378
            S+    +  +               E        + P A L  +   + +  +  +P+V
Sbjct: 64  RSAQGDSLAFETPLF-----------EVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVV 112

Query: 379 DDNDSLLDIYSRSDI 393
             +  L+ I + SD 
Sbjct: 113 AKD-VLVGIITDSDF 126

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

 Score = 35.7 bits (81), Expect = 0.003
 Identities = 19/143 (13%), Positives = 51/143 (35%), Gaps = 12/143 (8%)

Query: 259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFK 318
                      ++E+  +IL++ V     +          +++ +  +  +LK    HF 
Sbjct: 12  LKPTVVEEDTPIEEIVDRILEDPVTRTVYVAR------DNKLVGMIPVMHLLKVSGFHFF 65

Query: 319 HSSSSLPILQQPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIV 378
                  +++       +   + +           +     L  AL L++  ++  +P+V
Sbjct: 66  GFIPKEELIRS-----SMKRLIAKNASEIMLDPVYVHMDTPLEEALKLMIDNNIQEMPVV 120

Query: 379 DDNDSLLDIYSRSDI-TALAKDK 400
           D+   ++   +  +I  AL K +
Sbjct: 121 DEKGEIVGDLNSLEILLALWKGR 143

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	426
d2qlvb1	87	SIP2 {Saccharomyces cerevisiae [TaxId: 4932]}	99.95
d1z0na1	87	5'-AMP-activated protein kinase subunit beta-1 {Ra	99.94
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	99.93
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	99.9
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	99.75
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	99.75
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	99.74
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	99.74
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	99.73
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	99.73
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	99.72
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	99.72
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.71
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	99.71
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	99.71
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	99.71
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	99.71
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	99.7
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	99.7
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	99.7
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	99.69
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	99.69
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	99.69
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	99.69
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	99.69
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	99.69
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	99.69
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	99.68
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	99.68
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.68
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	99.67
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	99.66
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	99.66
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	99.65
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	99.65
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	99.64
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	99.64
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	99.64
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	99.62
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	99.61
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.61
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	99.61
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	99.61
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	99.61
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	99.6
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	99.59
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	99.58
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	99.57
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	99.54
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	99.54
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	99.53
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.53
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	99.53
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	99.51
d2bhua1	97	Glycosyltrehalose trehalohydrolase, N-terminal dom	98.58
d1m7xa1	110	1,4-alpha-glucan branching enzyme, N-terminal doma	98.45
d1kula_	108	Glucoamylase, granular starch-binding domain {Aspe	97.87
d3bmva2	105	Cyclodextrin glycosyltransferase, C-terminal domai	97.86
d1cyga2	106	Cyclodextrin glycosyltransferase, C-terminal domai	97.83
d1qhoa2	110	Cyclodextrin glycosyltransferase, C-terminal domai	97.74
d1eh9a1	90	Glycosyltrehalose trehalohydrolase, N-terminal dom	97.71
d1vema1	99	beta-amylase {Bacillus cereus [TaxId: 1396]}	97.56
d1bf2a1	162	Isoamylase, N-terminal domain N {Pseudomonas amylo	95.43
d2fhfa1	115	Pullulanase PulA {Klebsiella pneumoniae [TaxId: 57	95.31
d3c8da1	145	Enterochelin esterase {Shigella flexneri 2a str. 2	91.39
d1ji1a1	122	Maltogenic amylase, N-terminal domain N {Thermoact	80.38

>d2qlvb1 b.1.18.21 (B:161-247) SIP2 {Saccharomyces cerevisiae [TaxId: 4932]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: AMPK-beta glycogen binding domain-like
domain: SIP2
species: Saccharomyces cerevisiae [TaxId: 4932]

Probab=99.95  E-value=4.5e-28  Score=189.11  Aligned_cols=84  Identities=31%  Similarity=0.647  Sum_probs=78.6

Q ss_pred             cceEEEEEecCCCceEEEEeccCCCCCCCCCCCCCCCCCeEEEEEecCCceEEEEEEEcCeeecCCCCCeeeCCCCCeee
Q 014342           19 ILVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNC   98 (426)
Q Consensus        19 ~~~~v~f~~~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~L~~g~y~ykFiVDg~w~~d~~~p~~~d~~G~~nn   98 (426)
                      -.+||+|+|+++|++|+|+||||||++..+|.+....+|.|+++++||||.|+|||+|||+|++||++|++.|++|+.||
T Consensus         2 ~~vpv~f~w~~~g~~V~v~GsFn~W~~~~~~~~~~~~~g~~~~~l~l~~G~y~YKFiVDG~w~~d~~~p~~~d~~G~~nn   81 (87)
T d2qlvb1           2 LMVPVEIRWQQGGSKVYVTGSFTKWRKMIGLIPDSDNNGSFHVKLRLLPGTHRFRFIVDNELRVSDFLPTATDQMGNFVN   81 (87)
T ss_dssp             CCEEEEEEECSCCSCEEEEEGGGTTSSCEECEECSSSTTCEEEEEEECSEEEEEEEEETTEEECCTTSCEEBCSSCCCEE
T ss_pred             eEEEEEEEECCCCeEEEEEEEecCcCcccccccccCCCccEEEEEeCCCCCEEEEEEECCcEEcCCCCCeeECCCCCEeE
Confidence            47999999999999999999999999987776655558999999999999999999999999999999999999999999


Q ss_pred             EEEe
Q 014342           99 VYIA  102 (426)
Q Consensus        99 ~~~v  102 (426)
                      +|+|
T Consensus        82 vi~V   85 (87)
T d2qlvb1          82 YIEV   85 (87)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9999

>d1z0na1 b.1.18.21 (A:77-163) 5'-AMP-activated protein kinase subunit beta-1 {Rattus norvegicus [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: AMPK-beta glycogen binding domain-like
domain: 5'-AMP-activated protein kinase subunit beta-1
species: Rattus norvegicus [TaxId: 10116]

Probab=99.94  E-value=3e-27  Score=183.99  Aligned_cols=84  Identities=45%  Similarity=0.896  Sum_probs=77.4

Q ss_pred             ceEEEEEecCCCceEEEEeccCCCCCCCCCCCCCCCCCeEEEEEecCCceEEEEEEEcCeeecCCCCCeeeCCCCCeeeE
Q 014342           20 LVPVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCV   99 (426)
Q Consensus        20 ~~~v~f~~~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~L~~g~y~ykFiVDg~w~~d~~~p~~~d~~G~~nn~   99 (426)
                      ++||+|+|+++|++|+|+||||+|++ .+|.+.   +|.|++++.||||.|+|||+|||+|++||++|++.|+.|+.||+
T Consensus         1 ~~P~~f~w~~~a~~V~v~Gsfn~W~~-~~~~~~---~g~~~~tl~L~~G~y~YKFiVDG~w~~d~~~~~~~d~~G~~Nnv   76 (87)
T d1z0na1           1 ARPTVFRWTGGGKEVYLSGSFNNWSK-LPMTRS---QNNFVAILDLPEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNI   76 (87)
T ss_dssp             CEEEEEEECSCCSCEEEEEGGGTTCC-EECEEE---TTEEEEEEEECSEEEEEEEEETTEEECCTTSCEEECTTSCEEEE
T ss_pred             CCCEEEEEcCCCEEEEEEEEeCCCCc-cccccC---CCcEEEEEECCCceEEEEEEECCEEEeCCCCCeeECCCCCEEEE
Confidence            47999999999999999999999986 567653   68999999999999999999999999999999999999999999


Q ss_pred             EEeccCCCC
Q 014342          100 YIAVPQPDM  108 (426)
Q Consensus       100 ~~v~~~~~~  108 (426)
                      |.| ++.|.
T Consensus        77 i~V-~~~D~   84 (87)
T d1z0na1          77 IQV-KKTDF   84 (87)
T ss_dssp             EEE-CSCTT
T ss_pred             EEE-CCCcc
Confidence            999 76654

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.93  E-value=2.6e-25  Score=196.99  Aligned_cols=165  Identities=24%  Similarity=0.436  Sum_probs=130.7

Q ss_pred             HHHHHHHHhccccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCC-
Q 014342          144 SRDRISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGS-  222 (426)
Q Consensus       144 ~~~~~~~~l~~~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~-  222 (426)
                      +++++.+||.+++|||+|+.+.++++++++.|+.+|+++|.+++++++||||+++++++|+||..|++.++........ 
T Consensus         9 ~~~~i~~fl~~~~~~dvm~~s~~vv~i~~~~~v~~A~~~m~~~~i~~lpVvd~~~~~~vGiis~~Di~~~l~~~~~~~~~   88 (179)
T d2ooxe1           9 ALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQSSSF   88 (179)
T ss_dssp             HHHHHHHHHHHSBHHHHSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHHHCSC
T ss_pred             HHHHHHHHHcCCEeeeeCCCCCcEEEEECcchHHHHHHHHHHcCCCeEEEEeCCCCeeEEEEeechHHHHHHhccccccc
Confidence            7889999999999999999999999999999999999999999999999999877899999999999988765543221 


Q ss_pred             CCChhhhcccchhhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEE
Q 014342          223 NLTEEELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILY  302 (426)
Q Consensus       223 ~~~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvG  302 (426)
                      ..............+........          .|.++++++.++++|.+|+..|.++++|++||+|++++.+ ..+++|
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~i~v~~~~sl~~~~~~m~~~~~~~lpVvd~~g~~~-~~~vvg  157 (179)
T d2ooxe1          89 PEAIAEIDKFRLLGLREVERKIG----------AIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETG-SEMIVS  157 (179)
T ss_dssp             GGGGGGGGGSBHHHHHHHHHHTT----------CSCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEEEECTTTC-CEEEEE
T ss_pred             hhhhhhhhccchhhhcccceeee----------ecccCceEECCCCcHHHHHHHhhhcCceEEEEEecCCCcC-CCcEEE
Confidence            11111222222222222222211          3678899999999999999999999999999998543222 227999


Q ss_pred             EecHHhHHHHHHhhccc
Q 014342          303 LASLSDILKCICRHFKH  319 (426)
Q Consensus       303 iit~~dil~~l~~~~~~  319 (426)
                      |+|++||++++..++++
T Consensus       158 iiT~~dIlk~l~~~~~~  174 (179)
T d2ooxe1         158 VLTQYRILKFISMNCKE  174 (179)
T ss_dssp             EEEHHHHHHHHHTTCGG
T ss_pred             EEeHHHHHHHHHHhhhH
Confidence            99999999999988765

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.90  E-value=9.3e-24  Score=183.18  Aligned_cols=154  Identities=34%  Similarity=0.594  Sum_probs=122.1

Q ss_pred             HHHHHhccccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCCh
Q 014342          147 RISSFLSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTE  226 (426)
Q Consensus       147 ~~~~~l~~~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~  226 (426)
                      .|.+||+++||+|+||.+.+++++++++|+.+|+++|.++++.++||+|+++++++|+||..|++..+........ ...
T Consensus         5 ~~~~~l~~~t~~Dlm~~~~~vv~l~~~~sv~eA~~~l~~~~~~~~pVv~~~~~~~vG~is~~Dl~~~~~~~~~~~~-~~~   83 (159)
T d2v8qe2           5 VYTTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSAL-VQI   83 (159)
T ss_dssp             HHHHHHHHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHHHT-TTC
T ss_pred             HHHHHhcCCEEEeECCCCCceEEEcCCCcHHHHHHHHHHcCCCceeEEECCCCcEEEEEEHHHHHHHHHhcccccc-chh
Confidence            6889999999999999999999999999999999999999999999999877899999999999987764432110 000


Q ss_pred             hhhcccchhhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecH
Q 014342          227 EELETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASL  306 (426)
Q Consensus       227 ~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~  306 (426)
                      ..........+......            .|..+++++.|++++.+|+++|.++++|++||+|  +++|   +++|+||+
T Consensus        84 ~~~~~~~~~~~~~~~~~------------~~~~~~~~v~~~~~l~~v~~~m~~~~~~~v~Vvd--~~~g---~~~GivT~  146 (159)
T d2v8qe2          84 YELEEHKIETWREVYLQ------------DSFKPLVCISPNASLFDAVSSLIRNKIHRLPVID--PESG---NTLYILTH  146 (159)
T ss_dssp             CCGGGCBHHHHHHHHSS------------SSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEEC--TTTC---CEEEEECH
T ss_pred             hhhhhhhcccccceeee------------eeccceEEECCCCcHHHHHHHHHHhCCeEEEEEE--CCCC---eEEEEEeH
Confidence            11111111222211111            3578899999999999999999999999999995  3456   79999999


Q ss_pred             HhHHHHHHhhcc
Q 014342          307 SDILKCICRHFK  318 (426)
Q Consensus       307 ~dil~~l~~~~~  318 (426)
                      +||++++..+..
T Consensus       147 ~dilk~l~~~~~  158 (159)
T d2v8qe2         147 KRILKFLKLFIT  158 (159)
T ss_dssp             HHHHHHHHHHSC
T ss_pred             HHHHHHHHHHcC
Confidence            999999987643

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.75  E-value=7.6e-18  Score=139.88  Aligned_cols=115  Identities=15%  Similarity=0.191  Sum_probs=93.5

Q ss_pred             CCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccccc
Q 014342          258 PRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLG  337 (426)
Q Consensus       258 ~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~  337 (426)
                      ...++++.|++++.+|+++|.+++++++||+|+ ..++   +++|++|.+||++....            ..+....+  
T Consensus         4 i~dpvtv~~~~tv~~a~~~m~~~~~~~~pVvD~-~~~~---~lvGivt~~Di~~~~~~------------~~~~~~~~--   65 (126)
T d1zfja4           4 IIDPFFLTPEHKVSEAEELMQRYRISGVPIVET-LANR---KLVGIITNRDMRFISDY------------NAPISEHM--   65 (126)
T ss_dssp             SSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESC-TTTC---BEEEEEEHHHHHHCSCS------------SSBTTTSC--
T ss_pred             EeCceEECCCCCHHHHHHHHHHhCCCcEEEEee-ccCC---eEEEEeEHHHHHHhhcc------------CCceeeee--
Confidence            345679999999999999999999999999963 2245   79999999998764221            11111111  


Q ss_pred             ccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHhc
Q 014342          338 TWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  399 (426)
Q Consensus       338 ~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~~  399 (426)
                               +..+++++.+++++.+|+++|.+++++++||||++|+++|+||++||++....
T Consensus        66 ---------~~~~~~~~~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGiiT~~Dil~~~~~  118 (126)
T d1zfja4          66 ---------TSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIEF  118 (126)
T ss_dssp             ---------CCSCCCCEETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHHC
T ss_pred             ---------eccceeecCCCCCHHHHHHHHHhcCCcEEEEEcCCCeEEEEEEHHHHHHHhhC
Confidence                     12477889999999999999999999999999999999999999999997654

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.75  E-value=3.9e-18  Score=141.85  Aligned_cols=117  Identities=21%  Similarity=0.328  Sum_probs=101.0

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccc
Q 014342          256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  335 (426)
Q Consensus       256 ~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~  335 (426)
                      .|+++++++.+++++.+|+++|.+++++++||++    ++   +++|++|..|+++++..+..        .+.++.+++
T Consensus         9 ~m~~~~v~v~~~~tl~~a~~~m~~~~~~~~pV~d----~~---~~~Givt~~dl~~~~~~~~~--------~~~~v~~~~   73 (127)
T d2ef7a1           9 YMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVD----GN---KPVGIITERDIVKAIGKGKS--------LETKAEEFM   73 (127)
T ss_dssp             TSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEE----TT---EEEEEEEHHHHHHHHHTTCC--------TTCBGGGTS
T ss_pred             hCCCCCeEECCcCcHHHHHHHHHHcCCceEEeec----cc---chhhhcchhHHHHHHHhhcc--------ccchhhhhh
Confidence            3678999999999999999999999999999995    24   69999999999998875432        234555544


Q ss_pred             ccccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHhc
Q 014342          336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  399 (426)
Q Consensus       336 i~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~~  399 (426)
                      .            +++.++.+++++.+|+++|.+++++++||||++|+++|+||++||++.+.+
T Consensus        74 ~------------~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~lvGiit~~Dll~~i~~  125 (127)
T d2ef7a1          74 T------------ASLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAIDD  125 (127)
T ss_dssp             E------------ECCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHH
T ss_pred             h------------hhccccccccchhHHHHHHHHcCceEEEEEeCCCeEEEEEEHHHHHHHHHh
Confidence            2            477889999999999999999999999999999999999999999998764

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=99.74  E-value=1.1e-17  Score=142.06  Aligned_cols=134  Identities=13%  Similarity=0.178  Sum_probs=99.9

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccc
Q 014342          256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  335 (426)
Q Consensus       256 ~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~  335 (426)
                      .|...++++.+++++.+|++.|.+++++++||+|+   ++   +++|++|..||++++....................+.
T Consensus         9 ~m~~~p~~v~~~~~v~~a~~~m~~~~~~~ipVvd~---~~---~~vGiis~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (145)
T d1o50a3           9 LISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVAR---DN---KLVGMIPVMHLLKVSGFHFFGFIPKEELIRSSMKRLI   82 (145)
T ss_dssp             SSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEE---TT---EEEEEEEHHHHHHHHHHHHHCCCC-------CCCCCS
T ss_pred             hCCCCCEEECCcCcHHHHHHHHHHcCCceEEEecc---Cc---ceeeeeccchhhhhhhcccccccchhHHHHhhhhhcc
Confidence            36778899999999999999999999999999963   35   7999999999999887553321110000111111110


Q ss_pred             ccccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHhcc
Q 014342          336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDK  400 (426)
Q Consensus       336 i~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~~~  400 (426)
                      ...    +...+ .+++++.+++++.+|+++|.+++++++||||++|+++|+||++||++.+.++
T Consensus        83 ~~~----~~~~~-~~~~~i~~~~~l~~a~~~m~~~~i~~lpVVd~~g~i~Gvit~~dil~~l~~~  142 (145)
T d1o50a3          83 AKN----ASEIM-LDPVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLALWKG  142 (145)
T ss_dssp             SCB----HHHHC-BCCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHS
T ss_pred             ccC----HHHHc-CCCEEEcCCCCHHHHHHHHHHcCceEEEEEeCCCeEEEEEEHHHHHHHHHhc
Confidence            000    00111 3556899999999999999999999999999999999999999999988764

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=99.74  E-value=5.8e-18  Score=143.02  Aligned_cols=125  Identities=18%  Similarity=0.269  Sum_probs=100.5

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCC-ccccccccccc
Q 014342          256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSS-LPILQQPVSSI  334 (426)
Q Consensus       256 ~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~-~~~~~~~v~~l  334 (426)
                      .|+++++++.+++++.+|++.|.+++++++||+|   ++|   +++|++|..|+++++.......... ......++.++
T Consensus         7 iM~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVvd---~~~---~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~v~~i   80 (139)
T d2o16a3           7 MMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVD---ANK---KLLGIVSQRDLLAAQESSLQRSAQGDSLAFETPLFEV   80 (139)
T ss_dssp             TSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEEC---TTC---BEEEEEEHHHHHHHHHHHCC---------CCCBHHHH
T ss_pred             hCcCCCeEECCcCCHHHHHHHHHHcCCCeeeeec---ccc---cccccccHHHHHHHHHhhhhhhhcccccccccchhHh
Confidence            3677889999999999999999999999999995   346   7999999999999887654322110 01123344443


Q ss_pred             cccccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHhc
Q 014342          335 QLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  399 (426)
Q Consensus       335 ~i~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~~  399 (426)
                      |            .++++++++++++.+|+++|.+++++++||+|+ |+++|+||++||++.+.+
T Consensus        81 m------------~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~~lvGiit~~Dil~~~~~  132 (139)
T d2o16a3          81 M------------HTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAK-DVLVGIITDSDFVTIAIN  132 (139)
T ss_dssp             S------------CSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEET-TEEEEEECHHHHHHHHHH
T ss_pred             h------------ccccccccccchHHHHHHHHHHcCceEEEEEEC-CEEEEEEEHHHHHHHHHH
Confidence            3            368899999999999999999999999999995 899999999999997664

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.73  E-value=4.7e-18  Score=144.18  Aligned_cols=120  Identities=13%  Similarity=0.160  Sum_probs=100.2

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccc
Q 014342          256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  335 (426)
Q Consensus       256 ~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~  335 (426)
                      .|.+.++++.+++++.+|++.|.+++++++||++   ++|   +++|++|.+|+++.+.....      .....+++++|
T Consensus         8 im~~~~~~v~~~~tl~~a~~~m~~~~~~~~~V~d---~~~---~~~Giit~~di~~~~~~~~~------~~~~~~v~~im   75 (142)
T d1pvma4           8 IMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKD---DNG---NDVGLLSERSIIKRFIPRNK------KPDEVPIRLVM   75 (142)
T ss_dssp             TSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEEC---TTS---CEEEEEEHHHHHHHTGGGCC------CGGGSBGGGTS
T ss_pred             hCCCCCcEECCcCcHHHHHHHHHHCCCceEeeec---cCC---cccceEEeechhhhhhhhcc------ccccccccccc
Confidence            3678899999999999999999999999999995   235   69999999999987654321      12233444443


Q ss_pred             ccccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHhc
Q 014342          336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  399 (426)
Q Consensus       336 i~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~~  399 (426)
                                  .++++++++++++.+|+++|.+++++++||||++|+++|+||+.||++.+.+
T Consensus        76 ------------~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~l~Giit~~Dil~~l~~  127 (142)
T d1pvma4          76 ------------RKPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYLSR  127 (142)
T ss_dssp             ------------BSSCCEEETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTTTSCH
T ss_pred             ------------ccccccccchhhHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHHHHhh
Confidence                        2588999999999999999999999999999999999999999999985543

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.73  E-value=1.2e-19  Score=149.80  Aligned_cols=116  Identities=19%  Similarity=0.232  Sum_probs=59.0

Q ss_pred             CCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccccc
Q 014342          258 PRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLG  337 (426)
Q Consensus       258 ~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~  337 (426)
                      .+.++++.|++++.+|+++|.+++++++||+++....+   +++|++|.+|+.......          .+.++...+..
T Consensus         3 ~~~pvtv~~~~tl~da~~~m~~~~i~~~pVvd~~~~~~---~lvGivT~~Di~~~~~~~----------~~~~~~~~~~~   69 (120)
T d1jr1a4           3 ITDPVVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGS---RLVGIISSRDIDFLKEEE----------HDRFLEEIMTK   69 (120)
T ss_dssp             ECTTCC----CCCC--CCBC---------------CTT---CCC--------------------------------CCSB
T ss_pred             ccCCEEECCcCCHHHHHHHHHHhCCCeEEEeeccccCC---eEeeeeeeeeeeehhccc----------cCceeEEEEee
Confidence            34557899999999999999999999999996423345   799999999986443222          12233333321


Q ss_pred             ccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHH
Q 014342          338 TWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITAL  396 (426)
Q Consensus       338 ~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~  396 (426)
                                ..+++++.+++++.+|+++|.+++++++||||++|+++|+||++||++.
T Consensus        70 ----------~~~~~~v~~~~~~~~a~~~m~~~~i~~lpVVd~~~~lvGiiT~~Di~k~  118 (120)
T d1jr1a4          70 ----------REDLVVAPAGITLKEANEILQRSKKGKLPIVNENDELVAIIARTDLKKN  118 (120)
T ss_dssp             ----------TTTSCCEETTCCHHHHHHHTCSCC---CEEEETTTEEEEEECHHHHHHH
T ss_pred             ----------ccCceEECCCCCHHHHHHHHHHcCccEEEEEcCCCEEEEEEEHHHhhhc
Confidence                      2478899999999999999999999999999999999999999999874

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.72  E-value=2.9e-17  Score=137.40  Aligned_cols=119  Identities=18%  Similarity=0.311  Sum_probs=100.1

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccc
Q 014342          256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  335 (426)
Q Consensus       256 ~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~  335 (426)
                      .|+++++++.+++++.+|++.|.+++++++||+|+   +|   +++|++|..|+++.+.....       ....+++++|
T Consensus        10 im~~~~~~v~~~~t~~~a~~~m~~~~~~~~~Vvd~---~~---~~~Giit~~di~~~~~~~~~-------~~~~~v~~im   76 (132)
T d2yzia1          10 YMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVIND---DG---NVVGFFTKSDIIRRVIVPGL-------PYDIPVERIM   76 (132)
T ss_dssp             TCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECT---TS---CEEEEEEHHHHHHHTTTTCC-------CTTSBGGGTC
T ss_pred             HcCCCCeEECCcCcHHHHHHHHHHcCCcEEEEecc---cc---eeeeeeeHHHHHHHHhhccC-------ccceeEeecc
Confidence            36789999999999999999999999999999952   45   69999999999987654321       1345555554


Q ss_pred             ccccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHhcc
Q 014342          336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDK  400 (426)
Q Consensus       336 i~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~~~  400 (426)
                      .            +++.++++++++.+|+++|.+++++++||++ +|+++|+||.+||++.+.++
T Consensus        77 ~------------~~~~~v~~~~~~~~~~~~m~~~~~~~l~V~~-~~~~vGivt~~Dil~a~~~~  128 (132)
T d2yzia1          77 T------------RNLITANVNTPLGEVLRKMAEHRIKHILIEE-EGKIVGIFTLSDLLEASRRR  128 (132)
T ss_dssp             B------------CSCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHCC
T ss_pred             c------------ccccccCcchHHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHHH
Confidence            2            5788999999999999999999999999876 69999999999999976653

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.72  E-value=4.5e-18  Score=140.62  Aligned_cols=115  Identities=14%  Similarity=0.190  Sum_probs=94.7

Q ss_pred             CCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccccc
Q 014342          257 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL  336 (426)
Q Consensus       257 ~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i  336 (426)
                      |+++++++.+++++.+|+++|.+++++++||+|+   +|   +++|++|.+||++.+..+...      .....++++| 
T Consensus         7 M~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~---~~---~~~Giit~~Di~~~~~~~~~~------~~~~~v~~im-   73 (123)
T d1y5ha3           7 MNAGVTCVGEHETLTAAAQYMREHDIGALPICGD---DD---RLHGMLTDRDIVIKGLAAGLD------PNTATAGELA-   73 (123)
T ss_dssp             SEETCCCEETTSBHHHHHHHHHHHTCSEEEEECG---GG---BEEEEEEHHHHHHTTGGGTCC------TTTSBHHHHH-
T ss_pred             cCCCCcEECCcCcHHHHHHHHHHcCCCceEEEec---cc---hhhhhhhhhhHhhhhhhcCCC------cccceEEEEe-
Confidence            5678899999999999999999999999999953   35   799999999998765433211      1122333333 


Q ss_pred             cccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHH
Q 014342          337 GTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITAL  396 (426)
Q Consensus       337 ~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~  396 (426)
                                 .++++++.+++++.+|+++|.+++++++||+| +|+++|+||++||++.
T Consensus        74 -----------~~~~~~v~~~~~~~~~~~~m~~~~~~~lpVvd-~~~lvGiit~~Dil~~  121 (123)
T d1y5ha3          74 -----------RDSIYYVDANASIQEMLNVMEEHQVRRVPVIS-EHRLVGIVTEADIARH  121 (123)
T ss_dssp             -----------TTCCCCEETTCCHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHT
T ss_pred             -----------eccceeeeecchHHHHHHHHHHcCceEEEEEE-CCEEEEEEEHHHHHhh
Confidence                       25788999999999999999999999999998 5899999999999974

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.71  E-value=1.5e-17  Score=140.56  Aligned_cols=125  Identities=11%  Similarity=0.181  Sum_probs=102.2

Q ss_pred             CCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccccc
Q 014342          257 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL  336 (426)
Q Consensus       257 ~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i  336 (426)
                      |++.++++++++|+.+|+++|.+++++++||+++   ++   +++|++|..|+++++......... ......+++++| 
T Consensus         8 Mt~~v~~v~~~~tl~~a~~~m~~~~~~~ipVv~~---~~---~~~g~i~~~di~~~~~~~~~~~~~-~~~~~~~v~~im-   79 (141)
T d3ddja1           8 MSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDD---DN---KVVGIVTVVNAIKQLAKAVDKLDP-DYFYGKVVKDVM-   79 (141)
T ss_dssp             SBCSCCCEETTSBHHHHHHHHHHHTCSEEEEECT---TS---CEEEEEEHHHHHHHHHHHHHHTCT-HHHHTCBHHHHS-
T ss_pred             CcCCCeEEcCcCcHHHHHHHHHHcCCCeeecccc---cC---ccccccccccchhhhhcccccccc-ccccCCCHHHHh-
Confidence            5778999999999999999999999999999952   34   699999999999988654332110 112334454443 


Q ss_pred             cccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHhcc
Q 014342          337 GTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDK  400 (426)
Q Consensus       337 ~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~~~  400 (426)
                                 .++++++.+++++.+|+++|.+++++++||||++|+++|+||++||++.+.+.
T Consensus        80 -----------~~~~~~v~~~~~~~~~~~~m~~~~~~~l~Vvd~~~~~iGiIt~~Dil~~l~~~  132 (141)
T d3ddja1          80 -----------VTNLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIALHHI  132 (141)
T ss_dssp             -----------BCCCCBCCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHH
T ss_pred             -----------CcccccccccchhhHHHHHHHHcCCCEEEEEccCCEEEEEEEHHHHHHHHHHH
Confidence                       25788999999999999999999999999999999999999999999876543

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.71  E-value=3.2e-17  Score=136.26  Aligned_cols=113  Identities=19%  Similarity=0.312  Sum_probs=94.5

Q ss_pred             CCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccccccc
Q 014342          259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  338 (426)
Q Consensus       259 ~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~  338 (426)
                      ++++++.|++++.+|+++|.+++++++||++    ++   +++|++|..||++.+.....      ...+.++.+++   
T Consensus        13 ~~v~~i~~~~tl~~a~~~m~~~~~~~vpV~~----~~---~~vGiit~~Di~~~~~~~~~------~~~~~~v~~im---   76 (127)
T d2rc3a1          13 HTVVAIGPDDSVFNAMQKMAADNIGALLVMK----DE---KLVGILTERDFSRKSYLLDK------PVKDTQVKEIM---   76 (127)
T ss_dssp             CCCCEECTTSBHHHHHHHHHHHTCSEEEEEE----TT---EEEEEEEHHHHHHHGGGSSS------CGGGSBGGGTS---
T ss_pred             CccEEECCcCcHHHHHHHHHHcCCCEEEEEE----CC---eEEEEEEccchhhhhhhhcc------cccceeEeeec---
Confidence            5789999999999999999999999999995    25   79999999999887643321      12234444443   


Q ss_pred             cccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHH
Q 014342          339 WVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA  397 (426)
Q Consensus       339 ~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~  397 (426)
                               .+++.++.+++++.+|+++|.+++++++||+| +|+++|+||.+||++.+
T Consensus        77 ---------~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~~GiIt~~Dil~~~  125 (127)
T d2rc3a1          77 ---------TRQVAYVDLNNTNEDCMALITEMRVRHLPVLD-DGKVIGLLSIGDLVKDA  125 (127)
T ss_dssp             ---------BCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHH
T ss_pred             ---------cceeEEeccCccHHHHHHHHHHCCCcEEEEEE-CCEEEEEEEHHHHHHHH
Confidence                     36888999999999999999999999999998 69999999999999854

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.71  E-value=8e-18  Score=144.68  Aligned_cols=135  Identities=12%  Similarity=0.156  Sum_probs=97.3

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCC------cccc--
Q 014342          256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSS------LPIL--  327 (426)
Q Consensus       256 ~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~------~~~~--  327 (426)
                      .|.++++++.+++++.+|+++|.+++++++||+|   ++|   +++|++|..|+++.+..........      ....  
T Consensus         9 ~m~r~v~~v~~~~~l~~a~~~m~~~~~~~lPVvd---~~~---~lvG~it~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (156)
T d2yzqa1           9 YYQRYVSIVWEGTPLKAALKALLLSNSMALPVVD---SEG---NLVGIVDETDLLRDSEIVRIMKSTELAASSEEEWILE   82 (156)
T ss_dssp             TSBSCCCCEETTSBHHHHHHHHHTCSSSEEEEEC---TTS---CEEEEEEGGGGGGCGGGCC------------------
T ss_pred             HhcCCCeEECCcCcHHHHHHHHHHcCCCEEEEEe---CCC---CceeEEeeeechhhhcccccccccccccchhhhhhhh
Confidence            4788999999999999999999999999999995   345   7999999999986543321110000      0000  


Q ss_pred             c---cccccccccccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHH
Q 014342          328 Q---QPVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITAL  396 (426)
Q Consensus       328 ~---~~v~~l~i~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~  396 (426)
                      .   ..............+.+.|.++++++.+++++.+|+++|.+++++++||+|++|+++|+||++||++.
T Consensus        83 ~~~~~~~~~~~~~~~~~~v~~~m~~~~~tv~~~~~l~~~~~~m~~~~~~~lpVvd~~g~lvGivt~~Dil~~  154 (156)
T d2yzqa1          83 SHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLLKV  154 (156)
T ss_dssp             --------------CCCBGGGTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTTEEEEEEEHHHHGGG
T ss_pred             hhhhhhHHHhhhcccCCEeehhcccCceEECcccccHHHHHHHHHcCeeEEEEEeCCCEEEEEEEHHHHHHH
Confidence            0   00000000000012334556789999999999999999999999999999999999999999999875

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.71  E-value=3.5e-17  Score=138.24  Aligned_cols=124  Identities=19%  Similarity=0.203  Sum_probs=95.3

Q ss_pred             CCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccccc
Q 014342          257 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL  336 (426)
Q Consensus       257 ~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i  336 (426)
                      +..+++++.+++++.+|++.|.+++++++||+|   ++|   +++|++|..|+++++.......      +...+.+.+.
T Consensus        15 ~~~~v~tv~~~~~v~~a~~~m~~~~~~~ipVvd---~~~---~~vG~it~~Di~~~~~~~~~~~------~~~~~~~~~~   82 (140)
T d2nyca1          15 TQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIID---ENG---YLINVYEAYDVLGLIKGGIYND------LSLSVGEALM   82 (140)
T ss_dssp             BCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEC---TTC---BEEEEEEHHHHHHHHHTC----------CCSBHHHHHH
T ss_pred             cCCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEe---cCC---eEcceehhhHHHHHHhhccccc------cccchhhhhh
Confidence            567899999999999999999999999999995   345   7999999999999987553321      1111111110


Q ss_pred             cccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHh
Q 014342          337 GTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  398 (426)
Q Consensus       337 ~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~  398 (426)
                            ....+..+++++++++++.+|+++|.+++++++||||++|+++|+||++||++++-
T Consensus        83 ------~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~VVd~~~~l~GiIt~~Dii~~l~  138 (140)
T d2nyca1          83 ------RRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYIL  138 (140)
T ss_dssp             ------HCC------CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             ------hhhhcccccEEECCCCcHHHHHHHHHhcCeeEEEEEeCCCeEEEEEEHHHHHHHHh
Confidence                  00112247789999999999999999999999999999999999999999998764

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.71  E-value=2.4e-17  Score=137.10  Aligned_cols=114  Identities=14%  Similarity=0.188  Sum_probs=96.4

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhC-----CCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccc
Q 014342          256 PCPRPLVQAGPYDSLKEVALKILQN-----KVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQP  330 (426)
Q Consensus       256 ~~~~~~v~v~~~~sl~~a~~~m~~~-----~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~  330 (426)
                      .|+++++++++++|+.+|++.|.++     .++.+||+|   +++   +++|+++.++++..             ....+
T Consensus         6 iM~~d~i~v~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd---~~~---~l~G~v~~~~l~~~-------------~~~~~   66 (127)
T d2ouxa2           6 IMTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVD---QEN---HLVGVISLRDLIVN-------------DDDTL   66 (127)
T ss_dssp             HCBSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEEC---TTC---BEEEEEEHHHHTTS-------------CTTSB
T ss_pred             hCCCCcEEECCCCcHHHHHHHhHhhcccccceeeeEEEe---cCC---eEEEEEEeeccccc-------------cccEE
Confidence            3688999999999999999999876     478999995   345   79999999887632             11345


Q ss_pred             cccccccccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHhcc
Q 014342          331 VSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDK  400 (426)
Q Consensus       331 v~~l~i~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~~~  400 (426)
                      +.++|.            ++++++++++++.+|+++|.+++++++||||++|+++|+||..||+.++.++
T Consensus        67 v~~im~------------~~~~~v~~~~~l~~a~~~m~~~~~~~lPVVD~~g~lvGiIt~~Dil~~i~ee  124 (127)
T d2ouxa2          67 IADILN------------ERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVIDDE  124 (127)
T ss_dssp             HHHHSB------------SCCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHH
T ss_pred             hhhhcc------------CCCccCCCCCCHHHHHHHHHHhCCEEEEEEeCCCEEEEEEEHHHHHHHHHHH
Confidence            555552            5788999999999999999999999999999999999999999999988764

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=99.70  E-value=1.3e-17  Score=141.82  Aligned_cols=115  Identities=16%  Similarity=0.228  Sum_probs=96.8

Q ss_pred             CCCCCCceEeCCCCCHHHHHHHHHhCC-----CCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccc
Q 014342          255 RPCPRPLVQAGPYDSLKEVALKILQNK-----VATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQ  329 (426)
Q Consensus       255 ~~~~~~~v~v~~~~sl~~a~~~m~~~~-----v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~  329 (426)
                      .+|+++++++.+++|+.+|++.|.+++     ++.+||+|   ++|   +++|+++.+||+...             ...
T Consensus         5 ~iM~~~~itv~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd---~~~---~l~G~v~~~dl~~~~-------------~~~   65 (144)
T d2yvxa2           5 GLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVD---EKG---RLKGVLSLRDLIVAD-------------PRT   65 (144)
T ss_dssp             GGCBSCCCEECSSCBHHHHHHHSSSSCTTSSCSSBCEEBC---TTC---BBCCBCBHHHHTTSC-------------TTC
T ss_pred             cccCCCCEEECCCCcHHHHHHHHHHhcccccceeeeEEec---CCC---CEecccchhhhhhcc-------------ccc
Confidence            357899999999999999999998774     78999995   346   799999999986421             123


Q ss_pred             ccccccccccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHhcc
Q 014342          330 PVSSIQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDK  400 (426)
Q Consensus       330 ~v~~l~i~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~~~  400 (426)
                      ++.++|            .++++++++++++.+|+++|.+++++++||||++|+++|+||+.||++.+...
T Consensus        66 ~v~~im------------~~~~~~v~~~~~~~~a~~~m~~~~~~~lPVVd~~g~lvGiIt~~Dil~~l~~e  124 (144)
T d2yvxa2          66 RVAEIM------------NPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEAE  124 (144)
T ss_dssp             BSTTTS------------BSSCCCEESSCCHHHHHHHHHHSCCSEEEEECSSCBEEEEEEHHHHHHHHHHH
T ss_pred             chHHhc------------ccCCccCCCCChHHHHHHHHHHcCCCEEEEEeECCEEEEEEEHHHHHHHHHHH
Confidence            444443            35788999999999999999999999999999999999999999999987654

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=99.70  E-value=1.2e-17  Score=139.68  Aligned_cols=131  Identities=18%  Similarity=0.182  Sum_probs=103.7

Q ss_pred             cccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccc
Q 014342          154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHT  233 (426)
Q Consensus       154 ~~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~  233 (426)
                      +.|+.++|..+.++++++++.|+.+|+++|.+++++++||+|++ ++++|++|..|++..+.....    ...+.....+
T Consensus         1 e~tv~~~mip~~~v~~v~~~~tl~~a~~~m~~~~~s~~pVvd~~-~~~vGiit~~di~~~~~~~~~----~~~~~~~~~~   75 (132)
T d1yava3           1 EATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPS-YRLHGLIGTNMIMNSIFGLER----IEFEKLDQIT   75 (132)
T ss_dssp             TCBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTT-CBEEEEEEHHHHHHHHBCSSS----BCGGGTTTSB
T ss_pred             CCCHHHccccccceEEEcCCCCHHHHHHHHHhhCCCceEEeecc-cccccEEEcchhHHHhhcccc----cccccccccc
Confidence            35788999888999999999999999999999999999999964 799999999998876642211    1112222222


Q ss_pred             hhhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHH
Q 014342          234 ISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCI  313 (426)
Q Consensus       234 i~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l  313 (426)
                      +..+                   |.++++++.+++++.+++.+|.+++  .+||+|   ++|   +++|+||++||++++
T Consensus        76 v~~~-------------------m~~~~~~v~~~~~l~~~~~~~~~~~--~l~Vvd---~~~---~~~Givt~~dil~~l  128 (132)
T d1yava3          76 VEEV-------------------MLTDIPRLHINDPIMKGFGMVINNG--FVCVEN---DEQ---VFEGIFTRRVVLKEL  128 (132)
T ss_dssp             HHHH-------------------SBCSCCEEETTSBHHHHHHHTTTCS--EEEEEC---TTC---BEEEEEEHHHHHHHH
T ss_pred             cccc-------------------ccccccccccchhHHHHHHHHHhCC--EEEEEc---cCC---EEEEEEEHHHHHHHH
Confidence            2222                   4678889999999999999998764  599995   345   799999999999998


Q ss_pred             Hhh
Q 014342          314 CRH  316 (426)
Q Consensus       314 ~~~  316 (426)
                      .++
T Consensus       129 ~~~  131 (132)
T d1yava3         129 NKH  131 (132)
T ss_dssp             HHH
T ss_pred             Hhh
Confidence            765

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.70  E-value=1.2e-17  Score=143.53  Aligned_cols=148  Identities=22%  Similarity=0.269  Sum_probs=100.4

Q ss_pred             ccccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCC-CCChhhhcc
Q 014342          153 STHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGS-NLTEEELET  231 (426)
Q Consensus       153 ~~~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~-~~~~~~l~~  231 (426)
                      ++.++.++|.+  .++++.++.|+.+|+++|.+++++++||+|+ +++++|++|..|++..+........ .........
T Consensus         2 ~~~~v~~~m~r--~v~~v~~~~~l~~a~~~m~~~~~~~lPVvd~-~~~lvG~it~~Dl~~~~~~~~~~~~~~~~~~~~~~   78 (156)
T d2yzqa1           2 KGVEIEPYYQR--YVSIVWEGTPLKAALKALLLSNSMALPVVDS-EGNLVGIVDETDLLRDSEIVRIMKSTELAASSEEE   78 (156)
T ss_dssp             GGCBSTTTSBS--CCCCEETTSBHHHHHHHHHTCSSSEEEEECT-TSCEEEEEEGGGGGGCGGGCC--------------
T ss_pred             CCCCHHHHhcC--CCeEECCcCcHHHHHHHHHHcCCCEEEEEeC-CCCceeEEeeeechhhhcccccccccccccchhhh
Confidence            45678888966  6899999999999999999999999999996 5899999999998754322111000 000000000


Q ss_pred             cc-----hhhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecH
Q 014342          232 HT-----ISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASL  306 (426)
Q Consensus       232 ~~-----i~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~  306 (426)
                      ..     ................    ...|+++++++.+++++.++++.|.+++++++||+|+   +|   +++||+|+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~v----~~~m~~~~~tv~~~~~l~~~~~~m~~~~~~~lpVvd~---~g---~lvGivt~  148 (156)
T d2yzqa1          79 WILESHPTLLFEKFELQLPNKPV----AEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRG---EG---DLIGLIRD  148 (156)
T ss_dssp             ------------------CCCBG----GGTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEET---TT---EEEEEEEH
T ss_pred             hhhhhhhhhhHHHhhhcccCCEe----ehhcccCceEECcccccHHHHHHHHHcCeeEEEEEeC---CC---EEEEEEEH
Confidence            00     0000000000000000    1246788999999999999999999999999999963   46   79999999


Q ss_pred             HhHHHHH
Q 014342          307 SDILKCI  313 (426)
Q Consensus       307 ~dil~~l  313 (426)
                      +||+++|
T Consensus       149 ~Dil~~l  155 (156)
T d2yzqa1         149 FDLLKVL  155 (156)
T ss_dssp             HHHGGGG
T ss_pred             HHHHHHh
Confidence            9999865

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.69  E-value=1.1e-16  Score=137.18  Aligned_cols=124  Identities=23%  Similarity=0.209  Sum_probs=100.4

Q ss_pred             CCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccccc
Q 014342          258 PRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLG  337 (426)
Q Consensus       258 ~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~  337 (426)
                      .+.++++.+++|+.+|++.|.+++++++||+|+   ++   +++|++|..||++++......      ....++.+.+- 
T Consensus        11 ~~~vv~v~~~~~v~~a~~~m~~~~~~~lpVvd~---~~---~~vG~it~~Dl~~~~~~~~~~------~~~~~v~~~~~-   77 (153)
T d2ooxe2          11 WSNLATASMETKVYDVIKMLAEKNISAVPIVNS---EG---TLLNVYESVDVMHLIQDGDYS------NLDLSVGEALL-   77 (153)
T ss_dssp             CSSCCCBCTTSBHHHHHHHHHHTTCSEEEEECG---GG---BEEEEEEHHHHHHHHGGGCGG------GGGSBHHHHHH-
T ss_pred             CCCCeEEeCcCcHHHHHHHHHHcCcceEeeecc---cc---eEEEEEEeeeeeehhcccccc------ccccchhhhee-
Confidence            457899999999999999999999999999963   35   699999999999987654221      12333333321 


Q ss_pred             ccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHhc
Q 014342          338 TWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKD  399 (426)
Q Consensus       338 ~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~~  399 (426)
                           ....+..+++++.+++++.+|+++|.+++++++||||++|+++|+||++||++++..
T Consensus        78 -----~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~lvGivT~~Dil~~~~~  134 (153)
T d2ooxe2          78 -----KRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYIIY  134 (153)
T ss_dssp             -----TSCCCSSCCCEECTTCBHHHHHHHHHHSCCSEEEEECTTCBEEEEEEHHHHHHHHHS
T ss_pred             -----eeecccCCCeEECCCCcHHHHHHhhhhceeeEEEEEcCCCEEEEEEEHHHHHHHHHc
Confidence                 111233578899999999999999999999999999999999999999999997654

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.69  E-value=4.9e-17  Score=135.59  Aligned_cols=116  Identities=17%  Similarity=0.242  Sum_probs=96.2

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccc
Q 014342          256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQ  335 (426)
Q Consensus       256 ~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~  335 (426)
                      .|+++++++.+++++.+|++.|.+++++++||++.+. .+   +++|+++..|+++++.......        ..+.   
T Consensus         6 im~~~~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~~d~-~~---~~iGi~~~~dl~~~~~~~~~~~--------~~~~---   70 (131)
T d2riha1           6 LLKRPPVSLPETATIREVATELAKNRVGLAVLTARDN-PK---RPVAVVSERDILRAVAQRLDLD--------GPAM---   70 (131)
T ss_dssp             GCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTE-EE---EEEEEEEHHHHHHHHHTTCCTT--------SBSG---
T ss_pred             hccCCCEEECCCCcHHHHHHHHHHhCCCcEEEEEEcC-CC---EEEEEEeeeccccccccccccc--------cccc---
Confidence            3678899999999999999999999999999996432 34   6999999999999877553221        1111   


Q ss_pred             ccccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHH
Q 014342          336 LGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITAL  396 (426)
Q Consensus       336 i~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~  396 (426)
                        ..        ..++.++.+++++.+|+++|.+++++++||||++|+++|+||+.||++.
T Consensus        71 --~~--------~~~~~~v~~~~~~~~a~~~m~~~~i~~lpVvd~~g~l~Giit~~Dll~~  121 (131)
T d2riha1          71 --PI--------ANSPITVLDTDPVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFE  121 (131)
T ss_dssp             --GG--------CBCCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHSC
T ss_pred             --cc--------cccceeEeeecchHHHHHHHHHCCeEEEEEEcCCCeEEEEEEHHHHHHH
Confidence              11        1366789999999999999999999999999999999999999999874

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.69  E-value=7.3e-17  Score=132.63  Aligned_cols=113  Identities=17%  Similarity=0.238  Sum_probs=96.7

Q ss_pred             CCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccccc
Q 014342          257 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL  336 (426)
Q Consensus       257 ~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i  336 (426)
                      |+++++++.+++|+.+|++.|.+++++++||++    +|   +++|++|.+||++++.....       ....++.++| 
T Consensus         6 M~~~~~~v~~~~sl~ea~~~~~~~~~~~~~V~~----~~---~~~Gvit~~Di~~~l~~~~~-------~~~~~v~~~m-   70 (120)
T d1pbja3           6 MVTDVDTIDITASLEDVLRNYVENAKGSSVVVK----EG---VRVGIVTTWDVLEAIAEGDD-------LAEVKVWEVM-   70 (120)
T ss_dssp             CBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEE----TT---EEEEEEEHHHHHHHHHHTCC-------TTTSBHHHHC-
T ss_pred             CCCCCeEECCcCcHHHHHHHHHHcCceEEEEEe----CC---cEEEEEEeeecccccccccc-------ccceeEeeec-
Confidence            578899999999999999999999999999984    25   79999999999998876432       2234455544 


Q ss_pred             cccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHH
Q 014342          337 GTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITAL  396 (426)
Q Consensus       337 ~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~  396 (426)
                                 .+++.++++++++.+|+++|.+++++++||++ +|+++|++|++||++.
T Consensus        71 -----------~~~~~~v~~~~~l~~a~~~m~~~~~~~l~V~~-~~~l~Givt~~Dil~A  118 (120)
T d1pbja3          71 -----------ERDLVTISPRATIKEAAEKMVKNVVWRLLVEE-DDEIIGVISATDILRA  118 (120)
T ss_dssp             -----------BCGGGEECTTSCHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHH
T ss_pred             -----------ccccccccchhHHHHHHHHHHHcCCeEEEEEE-CCEEEEEEEHHHHHhc
Confidence                       25788999999999999999999999999987 6899999999999874

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=99.69  E-value=6.4e-17  Score=137.21  Aligned_cols=140  Identities=14%  Similarity=0.142  Sum_probs=101.6

Q ss_pred             cccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccc
Q 014342          154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHT  233 (426)
Q Consensus       154 ~~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~  233 (426)
                      -..+.++|+.  +++++.++.|+.+|+++|.++++.++||+|++ ++++|++|..||+.++..........  .......
T Consensus         3 ~~~v~~~m~~--~p~~v~~~~~v~~a~~~m~~~~~~~ipVvd~~-~~~vGiis~~Dl~~~~~~~~~~~~~~--~~~~~~~   77 (145)
T d1o50a3           3 VKDVCKLISL--KPTVVEEDTPIEEIVDRILEDPVTRTVYVARD-NKLVGMIPVMHLLKVSGFHFFGFIPK--EELIRSS   77 (145)
T ss_dssp             HHHHTTSSCC--CCEEECTTCBHHHHHHHHHHSTTCCEEEEEET-TEEEEEEEHHHHHHHHHHHHHCCCC---------C
T ss_pred             ceEhHHhCCC--CCEEECCcCcHHHHHHHHHHcCCceEEEeccC-cceeeeeccchhhhhhhcccccccch--hHHHHhh
Confidence            3456777876  56899999999999999999999999999964 79999999999988765433211000  0000000


Q ss_pred             hhhhHH-HHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHH
Q 014342          234 ISAWKV-GKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (426)
Q Consensus       234 i~~~~~-~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~  312 (426)
                      +..+.. ....            .| ..++++.+++++.+|+++|.+++++++||+|   ++|   +++|+||++||+++
T Consensus        78 ~~~~~~~~~~~------------~~-~~~~~i~~~~~l~~a~~~m~~~~i~~lpVVd---~~g---~i~Gvit~~dil~~  138 (145)
T d1o50a3          78 MKRLIAKNASE------------IM-LDPVYVHMDTPLEEALKLMIDNNIQEMPVVD---EKG---EIVGDLNSLEILLA  138 (145)
T ss_dssp             CCCCSSCBHHH------------HC-BCCCCBCTTSBHHHHHHHHHHHTCSEEEEEC---TTS---CEEEEEEHHHHHHH
T ss_pred             hhhccccCHHH------------Hc-CCCEEEcCCCCHHHHHHHHHHcCceEEEEEe---CCC---eEEEEEEHHHHHHH
Confidence            000000 0011            12 3457899999999999999999999999995   346   79999999999999


Q ss_pred             HHhhc
Q 014342          313 ICRHF  317 (426)
Q Consensus       313 l~~~~  317 (426)
                      +.+..
T Consensus       139 l~~~~  143 (145)
T d1o50a3         139 LWKGR  143 (145)
T ss_dssp             HHHSC
T ss_pred             HHhcC
Confidence            98753

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=99.69  E-value=3e-17  Score=137.25  Aligned_cols=121  Identities=11%  Similarity=0.156  Sum_probs=97.9

Q ss_pred             CCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccccc
Q 014342          258 PRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLG  337 (426)
Q Consensus       258 ~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~  337 (426)
                      ...++++.+++++.+|+++|.+++++++||+|   ++|   +++|++|..||++++........  ......++++++  
T Consensus        11 ~~~v~~v~~~~tl~~a~~~m~~~~~s~~pVvd---~~~---~~vGiit~~di~~~~~~~~~~~~--~~~~~~~v~~~m--   80 (132)
T d1yava3          11 ADKVAHVQVGNNLEHALLVLTKTGYTAIPVLD---PSY---RLHGLIGTNMIMNSIFGLERIEF--EKLDQITVEEVM--   80 (132)
T ss_dssp             GGGSCCEETTCBHHHHHHHHHHHCCSEEEEEC---TTC---BEEEEEEHHHHHHHHBCSSSBCG--GGTTTSBHHHHS--
T ss_pred             ccceEEEcCCCCHHHHHHHHHhhCCCceEEee---ccc---ccccEEEcchhHHHhhccccccc--cccccccccccc--
Confidence            46788999999999999999999999999995   346   79999999999999875432210  122234444443  


Q ss_pred             ccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHhcc
Q 014342          338 TWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDK  400 (426)
Q Consensus       338 ~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~~~  400 (426)
                                .+++.++++++++.+|+++|.+++  .+||||++|+++|+||++||++.+.++
T Consensus        81 ----------~~~~~~v~~~~~l~~~~~~~~~~~--~l~Vvd~~~~~~Givt~~dil~~l~~~  131 (132)
T d1yava3          81 ----------LTDIPRLHINDPIMKGFGMVINNG--FVCVENDEQVFEGIFTRRVVLKELNKH  131 (132)
T ss_dssp             ----------BCSCCEEETTSBHHHHHHHTTTCS--EEEEECTTCBEEEEEEHHHHHHHHHHH
T ss_pred             ----------cccccccccchhHHHHHHHHHhCC--EEEEEccCCEEEEEEEHHHHHHHHHhh
Confidence                      257889999999999999998765  499999999999999999999987653

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.69  E-value=1e-17  Score=138.45  Aligned_cols=121  Identities=19%  Similarity=0.291  Sum_probs=96.3

Q ss_pred             ccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccch
Q 014342          155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTI  234 (426)
Q Consensus       155 ~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i  234 (426)
                      .||.|+|.+  .+++++++.++.+|+++|.+++++++||+|++ ++++|++|.+|++..+.....   .     .....+
T Consensus         1 tt~~diM~~--~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~-~~~~Giit~~Di~~~~~~~~~---~-----~~~~~v   69 (123)
T d1y5ha3           1 TTARDIMNA--GVTCVGEHETLTAAAQYMREHDIGALPICGDD-DRLHGMLTDRDIVIKGLAAGL---D-----PNTATA   69 (123)
T ss_dssp             CCHHHHSEE--TCCCEETTSBHHHHHHHHHHHTCSEEEEECGG-GBEEEEEEHHHHHHTTGGGTC---C-----TTTSBH
T ss_pred             CCHHHhcCC--CCcEECCcCcHHHHHHHHHHcCCCceEEEecc-chhhhhhhhhhHhhhhhhcCC---C-----cccceE
Confidence            378899965  68889999999999999999999999999864 799999999998753321110   0     001111


Q ss_pred             hhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHH
Q 014342          235 SAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (426)
Q Consensus       235 ~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~  312 (426)
                      .       .+            |+++++++.+++++.+|+++|.+++++++||+|    ++   +++|+||..||+++
T Consensus        70 ~-------~i------------m~~~~~~v~~~~~~~~~~~~m~~~~~~~lpVvd----~~---~lvGiit~~Dil~~  121 (123)
T d1y5ha3          70 G-------EL------------ARDSIYYVDANASIQEMLNVMEEHQVRRVPVIS----EH---RLVGIVTEADIARH  121 (123)
T ss_dssp             H-------HH------------HTTCCCCEETTCCHHHHHHHHHHHTCSEEEEEE----TT---EEEEEEEHHHHHHT
T ss_pred             E-------EE------------eeccceeeeecchHHHHHHHHHHcCceEEEEEE----CC---EEEEEEEHHHHHhh
Confidence            1       11            367888999999999999999999999999995    25   79999999999985

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=99.69  E-value=1.1e-16  Score=135.10  Aligned_cols=132  Identities=14%  Similarity=0.212  Sum_probs=103.4

Q ss_pred             ccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccch
Q 014342          155 HTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTI  234 (426)
Q Consensus       155 ~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i  234 (426)
                      .++.|+|.+  .++++.++.|+.+|+++|.+++++++||+|+ +++++|+||..|++..+.......... .......++
T Consensus         2 i~v~diM~~--~~~~v~~~~tl~~a~~~m~~~~~~~lpVvd~-~~~~~Giit~~dl~~~~~~~~~~~~~~-~~~~~~~~v   77 (139)
T d2o16a3           2 IKVEDMMTR--HPHTLLRTHTLNDAKHLMEALDIRHVPIVDA-NKKLLGIVSQRDLLAAQESSLQRSAQG-DSLAFETPL   77 (139)
T ss_dssp             CBGGGTSEE--SCCCBCTTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEEHHHHHHHHHHHCC----------CCCBH
T ss_pred             EEHHHhCcC--CCeEECCcCCHHHHHHHHHHcCCCeeeeecc-cccccccccHHHHHHHHHhhhhhhhcc-cccccccch
Confidence            367899975  6799999999999999999999999999995 479999999999998776543221100 011111122


Q ss_pred             hhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHH
Q 014342          235 SAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCIC  314 (426)
Q Consensus       235 ~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~  314 (426)
                      .+                   .|.++++++++++++.+|+++|.+++++++||+|    +|   +++|+||.+||++++.
T Consensus        78 ~~-------------------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd----~~---~lvGiit~~Dil~~~~  131 (139)
T d2o16a3          78 FE-------------------VMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVA----KD---VLVGIITDSDFVTIAI  131 (139)
T ss_dssp             HH-------------------HSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEE----TT---EEEEEECHHHHHHHHH
T ss_pred             hH-------------------hhccccccccccchHHHHHHHHHHcCceEEEEEE----CC---EEEEEEEHHHHHHHHH
Confidence            22                   1467889999999999999999999999999995    25   7999999999999887


Q ss_pred             hh
Q 014342          315 RH  316 (426)
Q Consensus       315 ~~  316 (426)
                      ..
T Consensus       132 ~~  133 (139)
T d2o16a3         132 NL  133 (139)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.68  E-value=7.5e-17  Score=138.65  Aligned_cols=138  Identities=10%  Similarity=0.049  Sum_probs=101.3

Q ss_pred             CCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCc-cccccc--cc
Q 014342          256 PCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSL-PILQQP--VS  332 (426)
Q Consensus       256 ~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~-~~~~~~--v~  332 (426)
                      .|+++++++++++++.+|+++|.+++++++||+++ .+++   .++|++|..|+++++........... ......  ..
T Consensus        16 iM~~~~~~v~~~~tv~e~~~~l~~~~~~~~PVvd~-~~~~---~lvg~is~~dl~~~l~~~~~~~~~~~~~~~~~~~~~~   91 (160)
T d2d4za3          16 IMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDT-PDTN---TLLGSIDRTEVEGLLQRRISAYRRQPFEEMLTLEEIY   91 (160)
T ss_dssp             SSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESC-TTTC---BEEEEEEHHHHHHHHHHHHHTTSSSCCCSCCBHHHHH
T ss_pred             hcCCCCeEECCCCcHHHHHHHHHhcCCCccccccc-cccc---cccccchHHHHHHHHhhccccccccchhhccccchhh
Confidence            47899999999999999999999999999999973 2335   69999999999998876543211000 000000  00


Q ss_pred             c---ccccccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHh
Q 014342          333 S---IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  398 (426)
Q Consensus       333 ~---l~i~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~  398 (426)
                      .   ...........+.+.++++++.+++++.+|+++|.+++++++||+| +|+++|+||++||++.+.
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~tv~~~~~l~~~~~~m~~~~v~~l~V~d-~g~lvGiIt~~Di~k~I~  159 (160)
T d2d4za3          92 RWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS-MGKLVGVVALAEIQAAIE  159 (160)
T ss_dssp             HHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHH
T ss_pred             hhhhhhcccccceeeecccCCCEEEcCCCCHHHHHHHHHHcCCeEEEEEE-CCEEEEEEEHHHHHHHhC
Confidence            0   0000000012334557888999999999999999999999999998 599999999999998763

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.68  E-value=2.3e-17  Score=136.12  Aligned_cols=110  Identities=16%  Similarity=0.217  Sum_probs=77.8

Q ss_pred             CCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccccc
Q 014342          257 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL  336 (426)
Q Consensus       257 ~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i  336 (426)
                      |+++++++.+++++.+|+++|.+++++++||+|   ++|   +++|++|.+|++....             ..++.+++ 
T Consensus         7 M~~~~v~v~~~~~v~~a~~~m~~~~~~~~~Vvd---~~~---~~~G~it~~dl~~~~~-------------~~~~~~~~-   66 (122)
T d2yzqa2           7 MTQNPVTITLPATRNYALELFKKYKVRSFPVVN---KEG---KLVGIISVKRILVNPD-------------EEQLAMLV-   66 (122)
T ss_dssp             SEESCCCEESSCC------------CCEEEEEC---TTC---CEEEEEESSCC-----------------------CCC-
T ss_pred             cCCCCEEECCcCcHHHHHHHHHHcCCcEEEEEe---ccc---cchhhhhcchhhhhhc-------------ccchhhcc-
Confidence            466788999999999999999999999999995   345   7999999999886421             22333333 


Q ss_pred             cccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHH
Q 014342          337 GTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALA  397 (426)
Q Consensus       337 ~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~  397 (426)
                                 .++++++++++++.+|+++|.+++++++||||++|+++|+||++||++.+
T Consensus        67 -----------~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~liGiit~~dil~~~  116 (122)
T d2yzqa2          67 -----------KRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRY  116 (122)
T ss_dssp             -----------BSCCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHT
T ss_pred             -----------ccceeecchhhHHHHHHHHHHHcCcEEEEEEeCCCEEEEEEEHHHHHHHH
Confidence                       25788999999999999999999999999999999999999999998743

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.68  E-value=1.9e-17  Score=138.88  Aligned_cols=122  Identities=20%  Similarity=0.203  Sum_probs=96.9

Q ss_pred             CCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCC---cccccccccc
Q 014342          257 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSS---LPILQQPVSS  333 (426)
Q Consensus       257 ~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~---~~~~~~~v~~  333 (426)
                      |.+.++++.+++++.+|+++|.+++++++||+|     +   +++|++|..++++++..........   ......++++
T Consensus         7 M~~~~~~v~~~~tl~~a~~~m~~~~~~~l~V~d-----~---~lvg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~   78 (135)
T d3ddja2           7 MIKNPPILSKEDRLGSAFKKINEGGIGRIIVAN-----E---KIEGLLTTRDLLSTVESYCKDSCSQGDLYHISTTPIID   78 (135)
T ss_dssp             CEESCCEECTTSBHHHHHHHTTGGGCCEEEEES-----S---SEEEEEEHHHHHGGGTTCC---CCHHHHHHHHTSBGGG
T ss_pred             eeCCCeEECCCCcHHHHHHHHHHhCCeEEEEEe-----c---ceeceeeccchhhhhccccccchhhhhccccccCCHHH
Confidence            566778999999999999999999999999994     2   4999999999998765432211100   0112233443


Q ss_pred             ccccccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHh
Q 014342          334 IQLGTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  398 (426)
Q Consensus       334 l~i~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~  398 (426)
                      +|            .++++++++++++.+|+++|.+++++++||+|++|+++|+||++||+++++
T Consensus        79 im------------~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiit~~Dil~~~~  131 (135)
T d3ddja2          79 YM------------TPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLLYK  131 (135)
T ss_dssp             TS------------EESCCCEETTSCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHGGGGG
T ss_pred             Hh------------CCccceEEeccccchhhhhhhhcceeEEEEEeCCCEEEEEEEHHHHHHHHH
Confidence            33            357889999999999999999999999999999999999999999998554

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.67  E-value=2.1e-16  Score=133.28  Aligned_cols=132  Identities=18%  Similarity=0.267  Sum_probs=98.1

Q ss_pred             cccccc-CCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccc
Q 014342          155 HTVYEL-LPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHT  233 (426)
Q Consensus       155 ~~~~d~-~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~  233 (426)
                      .+..|+ +..+.++++++.+.|+.+|+++|.+++++++||+|+ +++++|+||..|++..+.......  .      ...
T Consensus         6 ~~i~~l~~~~~~~v~tv~~~~~v~~a~~~m~~~~~~~ipVvd~-~~~~vG~it~~Di~~~~~~~~~~~--~------~~~   76 (140)
T d2nyca1           6 IPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDE-NGYLINVYEAYDVLGLIKGGIYND--L------SLS   76 (140)
T ss_dssp             SBGGGSSCCBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECT-TCBEEEEEEHHHHHHHHHTC------C------CSB
T ss_pred             CcHHHhCCccCCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEec-CCeEcceehhhHHHHHHhhccccc--c------ccc
Confidence            566776 445678999999999999999999999999999996 478999999999988775332211  0      001


Q ss_pred             hhhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHH
Q 014342          234 ISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCI  313 (426)
Q Consensus       234 i~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l  313 (426)
                      +....... .            .+..+++++.+++++.+|++.|.+++++++||+|   ++|   +++|+||.+||++++
T Consensus        77 ~~~~~~~~-~------------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~VVd---~~~---~l~GiIt~~Dii~~l  137 (140)
T d2nyca1          77 VGEALMRR-S------------DDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVD---DVG---RLVGVLTLSDILKYI  137 (140)
T ss_dssp             HHHHHHHC-C------------------CEECTTSBHHHHHHHHHHHTCSEEEEEC---TTS---BEEEEEEHHHHHHHH
T ss_pred             hhhhhhhh-h------------hcccccEEECCCCcHHHHHHHHHhcCeeEEEEEe---CCC---eEEEEEEHHHHHHHH
Confidence            11111100 0            1346678999999999999999999999999995   346   799999999999987


Q ss_pred             H
Q 014342          314 C  314 (426)
Q Consensus       314 ~  314 (426)
                      .
T Consensus       138 ~  138 (140)
T d2nyca1         138 L  138 (140)
T ss_dssp             H
T ss_pred             h
Confidence            5

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=99.66  E-value=3.1e-16  Score=129.04  Aligned_cols=113  Identities=15%  Similarity=0.169  Sum_probs=96.3

Q ss_pred             CCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccccc
Q 014342          257 CPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQL  336 (426)
Q Consensus       257 ~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i  336 (426)
                      |.+.+.++.+++|+.+|+++|.+++.+++||+|   +++   +++|++|..|++++.             ...++.+++.
T Consensus         7 m~~~~~~v~~~~tv~ea~~~m~~~~~~~v~Vvd---~~~---~~~Gii~~~dl~~~~-------------~~~~v~~~~~   67 (121)
T d1vr9a3           7 VTQDFPMVEESATVRECLHRMRQYQTNECIVKD---REG---HFRGVVNKEDLLDLD-------------LDSSVFNKVS   67 (121)
T ss_dssp             CBSCSCEEETTCBHHHHHHHHHHTTSSEEEEEC---TTS---BEEEEEEGGGGTTSC-------------TTSBSGGGCB
T ss_pred             hcCCCeEECCCCCHHHHHHhhhhcCcEEEEEEe---CCc---eeEEEeehhhhhhhh-------------cccccccccc
Confidence            577889999999999999999999999999995   345   799999999997421             1234444432


Q ss_pred             cccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHhcc
Q 014342          337 GTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDK  400 (426)
Q Consensus       337 ~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~~~  400 (426)
                                  ++++++++++++.+|+++|.++++..+||||++|+++|+||+.||++.+.++
T Consensus        68 ------------~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvde~g~~~Gvit~~dil~~l~~~  119 (121)
T d1vr9a3          68 ------------LPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIEA  119 (121)
T ss_dssp             ------------CTTCCEETTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHHHHS
T ss_pred             ------------CccEEECCCCCHHHHHHHHHhcCceeeeeECCCCeEEEEEEHHHHHHHHHHh
Confidence                        4677899999999999999999999999999999999999999999977653

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.66  E-value=5.3e-16  Score=133.22  Aligned_cols=149  Identities=14%  Similarity=0.094  Sum_probs=106.0

Q ss_pred             cccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCC-CCcEEEEeehHHHHHHHHHhccCCCCCChhhhccc
Q 014342          154 THTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDF-KGRFVGVLSALDFILILRELGTNGSNLTEEELETH  232 (426)
Q Consensus       154 ~~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~-~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~  232 (426)
                      +.++.|+|.+  .+++++++.|+.+|+++|.+++++++||+|+. ++.++|++|..|++..+............+..  .
T Consensus        10 ~~~V~diM~~--~~~~v~~~~tv~e~~~~l~~~~~~~~PVvd~~~~~~lvg~is~~dl~~~l~~~~~~~~~~~~~~~--~   85 (160)
T d2d4za3          10 NIQVGDIMVR--DVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPFEEM--L   85 (160)
T ss_dssp             SCBTTSSSBS--SCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCSC--C
T ss_pred             ceEHHHhcCC--CCeEECCCCcHHHHHHHHHhcCCCccccccccccccccccchHHHHHHHHhhccccccccchhhc--c
Confidence            4589999976  78899999999999999999999999999853 46899999999999877654322111000000  0


Q ss_pred             chhhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHH
Q 014342          233 TISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (426)
Q Consensus       233 ~i~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~  312 (426)
                      +............. .........|.++++++.|++++.+|+++|.+++++++||++    +|   +++||||++||+++
T Consensus        86 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~tv~~~~~l~~~~~~m~~~~v~~l~V~d----~g---~lvGiIt~~Di~k~  157 (160)
T d2d4za3          86 TLEEIYRWEQREKN-VVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS----MG---KLVGVVALAEIQAA  157 (160)
T ss_dssp             BHHHHHHHHHHHTT-CBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEE----TT---EEEEEEEHHHHHHH
T ss_pred             ccchhhhhhhhhcc-cccceeeecccCCCEEEcCCCCHHHHHHHHHHcCCeEEEEEE----CC---EEEEEEEHHHHHHH
Confidence            11111111111000 001111124677889999999999999999999999999984    36   79999999999998


Q ss_pred             HH
Q 014342          313 IC  314 (426)
Q Consensus       313 l~  314 (426)
                      +.
T Consensus       158 I~  159 (160)
T d2d4za3         158 IE  159 (160)
T ss_dssp             HH
T ss_pred             hC
Confidence            64

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.65  E-value=2.1e-16  Score=134.09  Aligned_cols=123  Identities=17%  Similarity=0.169  Sum_probs=97.7

Q ss_pred             CCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccccc
Q 014342          258 PRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLG  337 (426)
Q Consensus       258 ~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~  337 (426)
                      .++++++.+++|+.+|+++|.+++++++||++   ++|   +++|++|..|+++++......      .+..++.+.+. 
T Consensus        19 ~~~v~~v~~~~tv~eal~~m~~~~~~~lpVvd---~~~---~~~Gvit~~di~~~l~~~~~~------~~~~~v~~~~~-   85 (145)
T d2v8qe1          19 YANIAMVRTTTPVYVALGIFVQHRVSALPVVD---EKG---RVVDIYSKFDVINLAAEKTYN------NLDVSVTKALQ-   85 (145)
T ss_dssp             CSSCCCEETTCBHHHHHHHHHHHCCSEEEEEC---TTS---BEEEEEEGGGTGGGGGSSCCC------CCSSBHHHHGG-
T ss_pred             CCCceEEcCcCcHHHHHHHHHHcCCCcccccc---cCC---ceEEEEEcchhhhhhhccccc------chhhhhhhccc-
Confidence            45688999999999999999999999999995   345   799999999998876543211      11222222111 


Q ss_pred             ccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHh
Q 014342          338 TWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAK  398 (426)
Q Consensus       338 ~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~  398 (426)
                           ....+..+++++.+++++.+|+++|.+++++++||||++|+++|+||++||++++-
T Consensus        86 -----~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~l~GiVt~~dii~~lv  141 (145)
T d2v8qe1          86 -----HRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQALV  141 (145)
T ss_dssp             -----GCCSCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             -----hhhhccCCCeEECCCCcHHHHHHHHHHcCceEEEEEccCCEEEEEEEHHHHHHHHH
Confidence                 11223467889999999999999999999999999999999999999999998764

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.65  E-value=3.9e-16  Score=129.46  Aligned_cols=126  Identities=15%  Similarity=0.235  Sum_probs=103.0

Q ss_pred             hccccccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcc
Q 014342          152 LSTHTVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELET  231 (426)
Q Consensus       152 l~~~~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~  231 (426)
                      |.+.++.|+|.+  ++++++++.|+.+|+++|.++++..+||+|+  ++++|++|..|++..+..-..    .      .
T Consensus         1 l~~~~V~d~m~~--~~v~v~~~~tl~~a~~~m~~~~~~~~pV~d~--~~~~Givt~~dl~~~~~~~~~----~------~   66 (127)
T d2ef7a1           1 MEEEIVKEYMKT--QVISVTKDAKLNDIAKVMTEKNIGSVIVVDG--NKPVGIITERDIVKAIGKGKS----L------E   66 (127)
T ss_dssp             CCCCBGGGTSBC--SCCEEETTCBHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHHHTTCC----T------T
T ss_pred             CCccCHHHhCCC--CCeEECCcCcHHHHHHHHHHcCCceEEeecc--cchhhhcchhHHHHHHHhhcc----c------c
Confidence            456788999966  7899999999999999999999999999984  689999999999876652111    0      0


Q ss_pred             cchhhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHH
Q 014342          232 HTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILK  311 (426)
Q Consensus       232 ~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~  311 (426)
                      .++..                   .|.++++++.+++++.+|++.|.+++++++||+|   +.|   +++|++|..||++
T Consensus        67 ~~v~~-------------------~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd---~~~---~lvGiit~~Dll~  121 (127)
T d2ef7a1          67 TKAEE-------------------FMTASLITIREDSPITGALALMRQFNIRHLPVVD---DKG---NLKGIISIRDITR  121 (127)
T ss_dssp             CBGGG-------------------TSEECCCCEETTSBHHHHHHHHHHHTCSEEEEEC---TTS---CEEEEEEHHHHHH
T ss_pred             chhhh-------------------hhhhhccccccccchhHHHHHHHHcCceEEEEEe---CCC---eEEEEEEHHHHHH
Confidence            01111                   2456788999999999999999999999999995   345   7999999999999


Q ss_pred             HHHhh
Q 014342          312 CICRH  316 (426)
Q Consensus       312 ~l~~~  316 (426)
                      ++.+.
T Consensus       122 ~i~~~  126 (127)
T d2ef7a1         122 AIDDM  126 (127)
T ss_dssp             HHHHH
T ss_pred             HHHhh
Confidence            98753

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.64  E-value=2e-16  Score=131.33  Aligned_cols=123  Identities=20%  Similarity=0.293  Sum_probs=96.8

Q ss_pred             cccccCCC-CCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccch
Q 014342          156 TVYELLPD-SGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTI  234 (426)
Q Consensus       156 ~~~d~~p~-s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i  234 (426)
                      |+.|+|.. ...+++++++.|+.+|+++|.++++.++||+|.  ++++|++|..|++..+.....        .....++
T Consensus         3 tV~dim~~k~~~v~~i~~~~tl~~a~~~m~~~~~~~vpV~~~--~~~vGiit~~Di~~~~~~~~~--------~~~~~~v   72 (127)
T d2rc3a1           3 TVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKD--EKLVGILTERDFSRKSYLLDK--------PVKDTQV   72 (127)
T ss_dssp             BHHHHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHGGGSSS--------CGGGSBG
T ss_pred             cHHHHHccCCCccEEECCcCcHHHHHHHHHHcCCCEEEEEEC--CeEEEEEEccchhhhhhhhcc--------cccceeE
Confidence            45555543 347899999999999999999999999999983  689999999998765432111        0111111


Q ss_pred             hhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHH
Q 014342          235 SAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCIC  314 (426)
Q Consensus       235 ~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~  314 (426)
                      ..                   .|+++++++.+++++.+|+++|.+++++++||+|    +|   +++|+||.+||++.+.
T Consensus        73 ~~-------------------im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd----~~---~~~GiIt~~Dil~~~i  126 (127)
T d2rc3a1          73 KE-------------------IMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLD----DG---KVIGLLSIGDLVKDAI  126 (127)
T ss_dssp             GG-------------------TSBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE----TT---EEEEEEEHHHHHHHHH
T ss_pred             ee-------------------eccceeEEeccCccHHHHHHHHHHCCCcEEEEEE----CC---EEEEEEEHHHHHHHHh
Confidence            11                   2567889999999999999999999999999995    25   7999999999999764

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.64  E-value=2.3e-16  Score=138.48  Aligned_cols=133  Identities=17%  Similarity=0.179  Sum_probs=100.9

Q ss_pred             CCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCccccccccccccccc
Q 014342          259 RPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLGT  338 (426)
Q Consensus       259 ~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~~  338 (426)
                      .+++++.++.|+.+|+..|.+++++++||+|+  +.+   +++|++|..|+++++.........     .....+.....
T Consensus        30 ~~vv~i~~~~~v~~A~~~m~~~~i~~lpVvd~--~~~---~~vGiis~~Di~~~l~~~~~~~~~-----~~~~~~~~~~~   99 (179)
T d2ooxe1          30 FRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDS--EAN---KFAGLLTMADFVNVIKYYYQSSSF-----PEAIAEIDKFR   99 (179)
T ss_dssp             EEEEEEETTSBHHHHHHHHHHHTCSCEEEEET--TTT---EEEEEECHHHHHHHHHHHHHHCSC-----GGGGGGGGGSB
T ss_pred             CcEEEEECcchHHHHHHHHHHcCCCeEEEEeC--CCC---eeEEEEeechHHHHHHhccccccc-----hhhhhhhhccc
Confidence            57899999999999999999999999999963  345   799999999999988654322110     00000000000


Q ss_pred             c-----ccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCC-----cEEEEEeHHHHHHHHhccc
Q 014342          339 W-----VPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDND-----SLLDIYSRSDITALAKDKA  401 (426)
Q Consensus       339 ~-----~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g-----~lvGiis~~DI~~~~~~~~  401 (426)
                      .     .......|.++++++.++++|.+|+.+|.+++++++||+|++|     +++|+||++||++++..+.
T Consensus       100 ~~~~~~~~~~~~~~~~~~i~v~~~~sl~~~~~~m~~~~~~~lpVvd~~g~~~~~~vvgiiT~~dIlk~l~~~~  172 (179)
T d2ooxe1         100 LLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISMNC  172 (179)
T ss_dssp             HHHHHHHHHHTTCSCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHHHTTC
T ss_pred             hhhhcccceeeeecccCceEECCCCcHHHHHHHhhhcCceEEEEEecCCCcCCCcEEEEEeHHHHHHHHHHhh
Confidence            0     0012234567899999999999999999999999999998654     6999999999999987653

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.64  E-value=3.4e-16  Score=134.73  Aligned_cols=133  Identities=20%  Similarity=0.325  Sum_probs=99.9

Q ss_pred             CCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCCcccccccccccccc
Q 014342          258 PRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSSLPILQQPVSSIQLG  337 (426)
Q Consensus       258 ~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~~~~~~~~v~~l~i~  337 (426)
                      ..+++++.+++++.+|+++|.+++++++||+++  +.+   +++|++|..|+++++...............  .  ....
T Consensus        22 ~~~vv~l~~~~sv~eA~~~l~~~~~~~~pVv~~--~~~---~~vG~is~~Dl~~~~~~~~~~~~~~~~~~~--~--~~~~   92 (159)
T d2v8qe2          22 SSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDS--KKQ---SFVGMLTITDFINILHRYYKSALVQIYELE--E--HKIE   92 (159)
T ss_dssp             EEEEEEEETTSBHHHHHHHHHHHTCSEEEEEET--TTT---EEEEEEEHHHHHHHHHHHHHHHTTTCCCGG--G--CBHH
T ss_pred             CCceEEEcCCCcHHHHHHHHHHcCCCceeEEEC--CCC---cEEEEEEHHHHHHHHHhccccccchhhhhh--h--hhcc
Confidence            356789999999999999999999999999963  345   799999999999988754332111000000  0  0000


Q ss_pred             ccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEc-CCCcEEEEEeHHHHHHHHhc
Q 014342          338 TWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVD-DNDSLLDIYSRSDITALAKD  399 (426)
Q Consensus       338 ~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd-~~g~lvGiis~~DI~~~~~~  399 (426)
                      .......+.+.++++++++++++.+|+++|.+++++++||+| ++|+++|+||.+||++++..
T Consensus        93 ~~~~~~~~~~~~~~~~v~~~~~l~~v~~~m~~~~~~~v~Vvd~~~g~~~GivT~~dilk~l~~  155 (159)
T d2v8qe2          93 TWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKL  155 (159)
T ss_dssp             HHHHHHSSSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHHH
T ss_pred             cccceeeeeeccceEEECCCCcHHHHHHHHHHhCCeEEEEEECCCCeEEEEEeHHHHHHHHHH
Confidence            000112234557889999999999999999999999999998 46899999999999998754

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.62  E-value=9.5e-16  Score=128.01  Aligned_cols=123  Identities=21%  Similarity=0.293  Sum_probs=99.6

Q ss_pred             cccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchh
Q 014342          156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTIS  235 (426)
Q Consensus       156 ~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~  235 (426)
                      .+.|+|..  ++++++++.|+.+|+++|.+++++++||+|+ +++++|++|..|++..+....   ..      ...+++
T Consensus         6 pV~~im~~--~~~~v~~~~t~~~a~~~m~~~~~~~~~Vvd~-~~~~~Giit~~di~~~~~~~~---~~------~~~~v~   73 (132)
T d2yzia1           6 PIKVYMTK--KLLGVKPSTSVQEASRLMMEFDVGSLVVIND-DGNVVGFFTKSDIIRRVIVPG---LP------YDIPVE   73 (132)
T ss_dssp             BGGGTCBC--CCCEECTTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHTTTTC---CC------TTSBGG
T ss_pred             cHHHHcCC--CCeEECCcCcHHHHHHHHHHcCCcEEEEecc-cceeeeeeeHHHHHHHHhhcc---Cc------cceeEe
Confidence            57788865  7899999999999999999999999999996 479999999999876543111   00      111111


Q ss_pred             hhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHh
Q 014342          236 AWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICR  315 (426)
Q Consensus       236 ~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~  315 (426)
                      .                   .|.++++++.+++++.+|++.|.+++++++||++    +|   +++|+||..||++++.+
T Consensus        74 ~-------------------im~~~~~~v~~~~~~~~~~~~m~~~~~~~l~V~~----~~---~~vGivt~~Dil~a~~~  127 (132)
T d2yzia1          74 R-------------------IMTRNLITANVNTPLGEVLRKMAEHRIKHILIEE----EG---KIVGIFTLSDLLEASRR  127 (132)
T ss_dssp             G-------------------TCBCSCCEEETTSBHHHHHHHHHHHTCSEEEEEE----TT---EEEEEEEHHHHHHHHHC
T ss_pred             e-------------------cccccccccCcchHHHHHHHHHHHcCCCEEEEEE----CC---EEEEEEEHHHHHHHHHH
Confidence            1                   2467889999999999999999999999999874    35   79999999999998765


Q ss_pred             h
Q 014342          316 H  316 (426)
Q Consensus       316 ~  316 (426)
                      .
T Consensus       128 ~  128 (132)
T d2yzia1         128 R  128 (132)
T ss_dssp             C
T ss_pred             H
Confidence            4

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.61  E-value=5.7e-16  Score=131.07  Aligned_cols=124  Identities=19%  Similarity=0.294  Sum_probs=99.1

Q ss_pred             cccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchh
Q 014342          156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTIS  235 (426)
Q Consensus       156 ~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~  235 (426)
                      ++.|+|..  ++++++.+.|+.+|++.|.++++..+||+|+ +++++|++|.+|++..+......        .....++
T Consensus         4 ~v~dim~~--~~~~v~~~~tl~~a~~~m~~~~~~~~~V~d~-~~~~~Giit~~di~~~~~~~~~~--------~~~~~v~   72 (142)
T d1pvma4           4 RVEKIMNS--NFKTVNWNTTVFDAVKIMNENHLYGLVVKDD-NGNDVGLLSERSIIKRFIPRNKK--------PDEVPIR   72 (142)
T ss_dssp             BGGGTSBT--TCCEEETTCBHHHHHHHHHHHTCCEEEEECT-TSCEEEEEEHHHHHHHTGGGCCC--------GGGSBGG
T ss_pred             EHHHhCCC--CCcEECCcCcHHHHHHHHHHCCCceEeeecc-CCcccceEEeechhhhhhhhccc--------ccccccc
Confidence            56788865  6889999999999999999999999999995 47999999999987654321110        0111111


Q ss_pred             hhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHh
Q 014342          236 AWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICR  315 (426)
Q Consensus       236 ~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~  315 (426)
                      .                   .|.++++++.+++++.+|+++|.+++++++||+|   ++|   +++|+||..||++++.+
T Consensus        73 ~-------------------im~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd---~~g---~l~Giit~~Dil~~l~~  127 (142)
T d1pvma4          73 L-------------------VMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVD---DPG---RVVGIVTLTDLSRYLSR  127 (142)
T ss_dssp             G-------------------TSBSSCCEEETTCBHHHHHHHHHHHTCSEEEEEC---TTC---CEEEEEEHHHHTTTSCH
T ss_pred             c-------------------ccccccccccchhhHHHHHHHHHHcCCcEEEEEe---cCC---EEEEEEEHHHHHHHHhh
Confidence            1                   2567889999999999999999999999999995   245   79999999999987654

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.61  E-value=1.3e-15  Score=128.34  Aligned_cols=130  Identities=16%  Similarity=0.291  Sum_probs=101.4

Q ss_pred             cccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchh
Q 014342          156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTIS  235 (426)
Q Consensus       156 ~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~  235 (426)
                      ++.++|..  ++++++++.|+.+|+++|.+++++++||+|+ +++++|++|..|++..+........   .......+++
T Consensus         3 ~V~~iMt~--~v~~v~~~~tl~~a~~~m~~~~~~~ipVv~~-~~~~~g~i~~~di~~~~~~~~~~~~---~~~~~~~~v~   76 (141)
T d3ddja1           3 PVKVFMST--KVQTIYKEVRLDQAVKLMLRRGFRRLPVIDD-DNKVVGIVTVVNAIKQLAKAVDKLD---PDYFYGKVVK   76 (141)
T ss_dssp             BHHHHSBC--SCCCEETTSBHHHHHHHHHHHTCSEEEEECT-TSCEEEEEEHHHHHHHHHHHHHHTC---THHHHTCBHH
T ss_pred             eeHHhCcC--CCeEEcCcCcHHHHHHHHHHcCCCeeecccc-cCccccccccccchhhhhccccccc---cccccCCCHH
Confidence            34567766  6899999999999999999999999999996 4789999999999877653321110   0111111222


Q ss_pred             hhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHh
Q 014342          236 AWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICR  315 (426)
Q Consensus       236 ~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~  315 (426)
                             .+            |+++++++.+++++.+|+++|.+++++++||+|+   +|   +++|+||.+||++.+..
T Consensus        77 -------~i------------m~~~~~~v~~~~~~~~~~~~m~~~~~~~l~Vvd~---~~---~~iGiIt~~Dil~~l~~  131 (141)
T d3ddja1          77 -------DV------------MVTNLVTIDELASVNRAAAEMIVKRIGSLLILNK---DN---TIRGIITERDLLIALHH  131 (141)
T ss_dssp             -------HH------------SBCCCCBCCTTSBHHHHHHHHHHHTCSEEEEECT---TS---CEEEEEEHHHHHHHHHH
T ss_pred             -------HH------------hCcccccccccchhhHHHHHHHHcCCCEEEEEcc---CC---EEEEEEEHHHHHHHHHH
Confidence                   22            4678899999999999999999999999999952   45   69999999999998875


Q ss_pred             h
Q 014342          316 H  316 (426)
Q Consensus       316 ~  316 (426)
                      .
T Consensus       132 ~  132 (141)
T d3ddja1         132 I  132 (141)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.61  E-value=2.5e-15  Score=128.55  Aligned_cols=124  Identities=15%  Similarity=0.204  Sum_probs=96.6

Q ss_pred             CCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHh
Q 014342          164 SGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQ  243 (426)
Q Consensus       164 s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~  243 (426)
                      ...+++++++.|+.+|+++|.+++++++||+|+ +++++|++|..|++..+......       . ...++......   
T Consensus        11 ~~~vv~v~~~~~v~~a~~~m~~~~~~~lpVvd~-~~~~vG~it~~Dl~~~~~~~~~~-------~-~~~~v~~~~~~---   78 (153)
T d2ooxe2          11 WSNLATASMETKVYDVIKMLAEKNISAVPIVNS-EGTLLNVYESVDVMHLIQDGDYS-------N-LDLSVGEALLK---   78 (153)
T ss_dssp             CSSCCCBCTTSBHHHHHHHHHHTTCSEEEEECG-GGBEEEEEEHHHHHHHHGGGCGG-------G-GGSBHHHHHHT---
T ss_pred             CCCCeEEeCcCcHHHHHHHHHHcCcceEeeecc-cceEEEEEEeeeeeehhcccccc-------c-cccchhhheee---
Confidence            457899999999999999999999999999996 47999999999988766432110       0 11122222111   


Q ss_pred             hccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHh
Q 014342          244 LNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICR  315 (426)
Q Consensus       244 ~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~  315 (426)
                      .          ..+..+++++.+++++.++++.|.+++++++||+|   ++|   +++|+||++||++++..
T Consensus        79 ~----------~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd---~~~---~lvGivT~~Dil~~~~~  134 (153)
T d2ooxe2          79 R----------PANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVD---ENL---KLEGILSLADILNYIIY  134 (153)
T ss_dssp             S----------CCCSSCCCEECTTCBHHHHHHHHHHSCCSEEEEEC---TTC---BEEEEEEHHHHHHHHHS
T ss_pred             e----------ecccCCCeEECCCCcHHHHHHhhhhceeeEEEEEc---CCC---EEEEEEEHHHHHHHHHc
Confidence            0          02356788999999999999999999999999995   346   79999999999998864

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.61  E-value=2e-15  Score=123.82  Aligned_cols=118  Identities=22%  Similarity=0.304  Sum_probs=96.0

Q ss_pred             ccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhh
Q 014342          157 VYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISA  236 (426)
Q Consensus       157 ~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~  236 (426)
                      +.|+|..  .+++++.+.|+.+|++.|.+++++.+||.|+  ++++|++|..|+++.+.....         +....+..
T Consensus         2 V~diM~~--~~~~v~~~~sl~ea~~~~~~~~~~~~~V~~~--~~~~Gvit~~Di~~~l~~~~~---------~~~~~v~~   68 (120)
T d1pbja3           2 VEDVMVT--DVDTIDITASLEDVLRNYVENAKGSSVVVKE--GVRVGIVTTWDVLEAIAEGDD---------LAEVKVWE   68 (120)
T ss_dssp             HHHHCBC--SCCEEETTCBHHHHHHHHHHHCCCEEEEEET--TEEEEEEEHHHHHHHHHHTCC---------TTTSBHHH
T ss_pred             hHHhCCC--CCeEECCcCcHHHHHHHHHHcCceEEEEEeC--CcEEEEEEeeecccccccccc---------ccceeEee
Confidence            4577876  6788999999999999999999999999974  799999999999887653211         11111222


Q ss_pred             hHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHH
Q 014342          237 WKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCI  313 (426)
Q Consensus       237 ~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l  313 (426)
                      +                   |.+++.++++++++.+|++.|.+++++++||++    +|   +++|++|.+||+++.
T Consensus        69 ~-------------------m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~V~~----~~---~l~Givt~~Dil~A~  119 (120)
T d1pbja3          69 V-------------------MERDLVTISPRATIKEAAEKMVKNVVWRLLVEE----DD---EIIGVISATDILRAK  119 (120)
T ss_dssp             H-------------------CBCGGGEECTTSCHHHHHHHHHHHTCSEEEEEE----TT---EEEEEEEHHHHHHHH
T ss_pred             e-------------------cccccccccchhHHHHHHHHHHHcCCeEEEEEE----CC---EEEEEEEHHHHHhcC
Confidence            1                   467889999999999999999999999999984    35   799999999999863

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.61  E-value=1.2e-15  Score=129.38  Aligned_cols=132  Identities=19%  Similarity=0.278  Sum_probs=98.0

Q ss_pred             cccccCC-CCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccch
Q 014342          156 TVYELLP-DSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTI  234 (426)
Q Consensus       156 ~~~d~~p-~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i  234 (426)
                      +..|+.- ...+++++.++.|+.+|+++|.+++++++||+|+ +++++|++|..|++..+......  ..      ...+
T Consensus        10 ~l~~l~i~~~~~v~~v~~~~tv~eal~~m~~~~~~~lpVvd~-~~~~~Gvit~~di~~~l~~~~~~--~~------~~~v   80 (145)
T d2v8qe1          10 SLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDE-KGRVVDIYSKFDVINLAAEKTYN--NL------DVSV   80 (145)
T ss_dssp             BHHHHTCSBCSSCCCEETTCBHHHHHHHHHHHCCSEEEEECT-TSBEEEEEEGGGTGGGGGSSCCC--CC------SSBH
T ss_pred             CHHHHcCCCCCCceEEcCcCcHHHHHHHHHHcCCCccccccc-CCceEEEEEcchhhhhhhccccc--ch------hhhh
Confidence            4555432 2346899999999999999999999999999995 57999999999987554321110  00      0111


Q ss_pred             hhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHH
Q 014342          235 SAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCIC  314 (426)
Q Consensus       235 ~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~  314 (426)
                      ...   ....          ..+..+++++.+++++.++++.|.+++++++||+|   ++|   +++|+||++||++++.
T Consensus        81 ~~~---~~~~----------~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd---~~g---~l~GiVt~~dii~~lv  141 (145)
T d2v8qe1          81 TKA---LQHR----------SHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVD---EHD---VVKGIVSLSDILQALV  141 (145)
T ss_dssp             HHH---GGGC----------CSCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEEC---TTS---BEEEEEEHHHHHHHHH
T ss_pred             hhc---cchh----------hhccCCCeEECCCCcHHHHHHHHHHcCceEEEEEc---cCC---EEEEEEEHHHHHHHHH
Confidence            111   0000          12467788999999999999999999999999995   346   7999999999999986


Q ss_pred             h
Q 014342          315 R  315 (426)
Q Consensus       315 ~  315 (426)
                      .
T Consensus       142 ~  142 (145)
T d2v8qe1         142 L  142 (145)
T ss_dssp             S
T ss_pred             h
Confidence            3

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.60  E-value=1.7e-15  Score=125.40  Aligned_cols=111  Identities=21%  Similarity=0.305  Sum_probs=89.5

Q ss_pred             cEEEEcCCccHHHHHHHHHHCCCCeeeeeeCC-CCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhh
Q 014342          166 KVTALDVNLAVKQAFHVLYEQGLPMVPLWDDF-KGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL  244 (426)
Q Consensus       166 ~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~-~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~  244 (426)
                      .++++.++.|+.+|+++|.+++++++||+|+. +++++|+||..|+.....   .. .          ...         
T Consensus         6 dpvtv~~~~tv~~a~~~m~~~~~~~~pVvD~~~~~~lvGivt~~Di~~~~~---~~-~----------~~~---------   62 (126)
T d1zfja4           6 DPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFISD---YN-A----------PIS---------   62 (126)
T ss_dssp             SCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHCSC---SS-S----------BTT---------
T ss_pred             CceEECCCCCHHHHHHHHHHhCCCcEEEEeeccCCeEEEEeEHHHHHHhhc---cC-C----------cee---------
Confidence            35789999999999999999999999999953 578999999999753210   00 0          000         


Q ss_pred             ccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHH
Q 014342          245 NLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCIC  314 (426)
Q Consensus       245 ~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~  314 (426)
                               ..++..+++++.+++++.+|+++|.+++++++||+|   ++|   +++|+||..||++.+.
T Consensus        63 ---------~~~~~~~~~~~~~~~~l~~a~~~m~~~~~~~lpVVd---~~g---~lvGiiT~~Dil~~~~  117 (126)
T d1zfja4          63 ---------EHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVD---NSG---RLSGLITIKDIEKVIE  117 (126)
T ss_dssp             ---------TSCCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEEC---TTS---BEEEEEEHHHHHHHHH
T ss_pred             ---------eeeeccceeecCCCCCHHHHHHHHHhcCCcEEEEEc---CCC---eEEEEEEHHHHHHHhh
Confidence                     012467788999999999999999999999999995   346   7999999999999764

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=8e-15  Score=127.46  Aligned_cols=138  Identities=10%  Similarity=0.099  Sum_probs=97.2

Q ss_pred             eEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhhccccCCC----cccccc-ccccccc
Q 014342          262 VQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRHFKHSSSS----LPILQQ-PVSSIQL  336 (426)
Q Consensus       262 v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~~~~~~~~----~~~~~~-~v~~l~i  336 (426)
                      +.+.++.|+.+|.++|.+++++++||+++ ++++   +++|++|.+||++++..........    ...+.. .......
T Consensus        20 v~~~~~~tv~~a~~ll~~~~~~~~PVV~~-~~~~---~lvG~is~~dl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (169)
T d2j9la1          20 VLTQDSMTVEDVETIISETTYSGFPVVVS-RESQ---RLVGFVLRRDLIISIENARKKQDGVVSTSIIYFTEHSPPLPPY   95 (169)
T ss_dssp             CEESSCEEHHHHHHHHHHCCCSEEEEESC-TTTC---BEEEEEEHHHHHHHHHHHHTSCSCCCTTCEEECSSSCCCCCTT
T ss_pred             EECCCcCCHHHHHHHHHHcCCCceeeeec-CCCC---eEEEEEEhHHHHHHHhcccccccccccchhhhhcccchhhhhc
Confidence            55678889999999999999999999963 3345   7999999999999886542221100    000000 0000000


Q ss_pred             cccccccCCCCCCCeEEEcCCCCHHHHHHHHHhcCCcEeeEEcCCCcEEEEEeHHHHHHHHhcccccc
Q 014342          337 GTWVPRIGEANGRPFAMLRPTASLGSALALLVQADVSSIPIVDDNDSLLDIYSRSDITALAKDKAYAQ  404 (426)
Q Consensus       337 ~~~~~~~~~~~~~~v~tv~~~~~l~~a~~~m~~~~i~~lPVVd~~g~lvGiis~~DI~~~~~~~~~~~  404 (426)
                      ......+++.|.++++++.+++++.+|+++|.+++++++||+| +|+++|+||++||++++.+-...+
T Consensus        96 ~~~~~~v~~im~~~~~tv~~~~~l~~v~~~~~~~~~~~l~V~d-~g~lvGiIt~~Dil~~l~~~~~~~  162 (169)
T d2j9la1          96 TPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH-NGRLLGIITKKDVLKHIAQMANQD  162 (169)
T ss_dssp             CCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHHHCC--
T ss_pred             cccccchhhhccCCCEEECCCCcHHHHHHHHHhcCceEEEEEE-CCEEEEEEEHHHHHHHHHHHhcCC
Confidence            0111123344456888999999999999999999999999987 689999999999999887654433

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=2.7e-15  Score=130.50  Aligned_cols=154  Identities=11%  Similarity=0.091  Sum_probs=102.0

Q ss_pred             ccccccCCCC--C--cEEEEcCCccHHHHHHHHHHCCCCeeeeeeC-CCCcEEEEeehHHHHHHHHHhccCCCCCChhhh
Q 014342          155 HTVYELLPDS--G--KVTALDVNLAVKQAFHVLYEQGLPMVPLWDD-FKGRFVGVLSALDFILILRELGTNGSNLTEEEL  229 (426)
Q Consensus       155 ~~~~d~~p~s--~--~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~-~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l  229 (426)
                      ..+.|+|...  .  -++.+..+.|+.+|+++|.+++++++||+++ ++++++|++|.+|++..+...............
T Consensus         3 ~~a~DiM~p~~~~~~~~v~~~~~~tv~~a~~ll~~~~~~~~PVV~~~~~~~lvG~is~~dl~~~l~~~~~~~~~~~~~~~   82 (169)
T d2j9la1           3 TLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVSTSI   82 (169)
T ss_dssp             CBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCCCTTCE
T ss_pred             cchhhhcCcCCCCCceEEECCCcCCHHHHHHHHHHcCCCceeeeecCCCCeEEEEEEhHHHHHHHhcccccccccccchh
Confidence            3466777532  1  2355678899999999999999999999953 457899999999999877643322111110100


Q ss_pred             cccchhhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhH
Q 014342          230 ETHTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDI  309 (426)
Q Consensus       230 ~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~di  309 (426)
                      ................  ..  -....|.++++++.+++++.+++++|.+++++++||++    +|   +++|+||++||
T Consensus        83 ~~~~~~~~~~~~~~~~--~~--~v~~im~~~~~tv~~~~~l~~v~~~~~~~~~~~l~V~d----~g---~lvGiIt~~Di  151 (169)
T d2j9la1          83 IYFTEHSPPLPPYTPP--TL--KLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH----NG---RLLGIITKKDV  151 (169)
T ss_dssp             EECSSSCCCCCTTCCC--CE--ECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEE----TT---EEEEEEEHHHH
T ss_pred             hhhcccchhhhhcccc--cc--chhhhccCCCEEECCCCcHHHHHHHHHhcCceEEEEEE----CC---EEEEEEEHHHH
Confidence            0000000000000000  00  00013567788999999999999999999999999984    35   79999999999


Q ss_pred             HHHHHhhccc
Q 014342          310 LKCICRHFKH  319 (426)
Q Consensus       310 l~~l~~~~~~  319 (426)
                      ++++.+....
T Consensus       152 l~~l~~~~~~  161 (169)
T d2j9la1         152 LKHIAQMANQ  161 (169)
T ss_dssp             HHHHHHHCC-
T ss_pred             HHHHHHHhcC
Confidence            9999876543

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.57  E-value=4.9e-15  Score=122.79  Aligned_cols=118  Identities=22%  Similarity=0.319  Sum_probs=95.4

Q ss_pred             cccccCCCCCcEEEEcCCccHHHHHHHHHHC-----CCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhc
Q 014342          156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQ-----GLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELE  230 (426)
Q Consensus       156 ~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~-----~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~  230 (426)
                      |+..+|..  .++++.++.|+.+|++.|.++     ++..+||+|+ +++++|+++..|++.      .. .        
T Consensus         2 taG~iM~~--d~i~v~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~-~~~l~G~v~~~~l~~------~~-~--------   63 (127)
T d2ouxa2           2 TAGAIMTT--EFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQ-ENHLVGVISLRDLIV------ND-D--------   63 (127)
T ss_dssp             BHHHHCBS--CCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECT-TCBEEEEEEHHHHTT------SC-T--------
T ss_pred             ChhHhCCC--CcEEECCCCcHHHHHHHhHhhcccccceeeeEEEec-CCeEEEEEEeecccc------cc-c--------
Confidence            56678866  779999999999999999887     4789999996 579999999888641      00 0        


Q ss_pred             ccchhhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHH
Q 014342          231 THTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDIL  310 (426)
Q Consensus       231 ~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil  310 (426)
                      ..++.+       +            |.++++++.+++++.+|+++|.+++++++||+|   ++|   +++|+||..||+
T Consensus        64 ~~~v~~-------i------------m~~~~~~v~~~~~l~~a~~~m~~~~~~~lPVVD---~~g---~lvGiIt~~Dil  118 (127)
T d2ouxa2          64 DTLIAD-------I------------LNERVISVHVGDDQEDVAQTIRDYDFLAVPVTD---YDD---HLLGIVTVDDII  118 (127)
T ss_dssp             TSBHHH-------H------------SBSCCCCEETTSBHHHHHHHHHHHTCSEEEEEC---TTC---BEEEEEEHHHHH
T ss_pred             cEEhhh-------h------------ccCCCccCCCCCCHHHHHHHHHHhCCEEEEEEe---CCC---EEEEEEEHHHHH
Confidence            011222       1            467888999999999999999999999999995   346   799999999999


Q ss_pred             HHHHhh
Q 014342          311 KCICRH  316 (426)
Q Consensus       311 ~~l~~~  316 (426)
                      +++.+.
T Consensus       119 ~~i~ee  124 (127)
T d2ouxa2         119 DVIDDE  124 (127)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            987643

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.54  E-value=1.4e-15  Score=125.26  Aligned_cols=117  Identities=15%  Similarity=0.279  Sum_probs=80.7

Q ss_pred             cccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchh
Q 014342          156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTIS  235 (426)
Q Consensus       156 ~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~  235 (426)
                      ++.|+|..  ++++++++.|+.+|+++|.++++.++||+|+ +|+++|+||..|++....           +    ..+.
T Consensus         2 ~v~diM~~--~~v~v~~~~~v~~a~~~m~~~~~~~~~Vvd~-~~~~~G~it~~dl~~~~~-----------~----~~~~   63 (122)
T d2yzqa2           2 RVKTIMTQ--NPVTITLPATRNYALELFKKYKVRSFPVVNK-EGKLVGIISVKRILVNPD-----------E----EQLA   63 (122)
T ss_dssp             BHHHHSEE--SCCCEESSCC------------CCEEEEECT-TCCEEEEEESSCC-------------------------
T ss_pred             CcccccCC--CCEEECCcCcHHHHHHHHHHcCCcEEEEEec-cccchhhhhcchhhhhhc-----------c----cchh
Confidence            34567754  6789999999999999999999999999996 589999999999763210           0    0000


Q ss_pred             hhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHh
Q 014342          236 AWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICR  315 (426)
Q Consensus       236 ~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~  315 (426)
                                         ..|..+++++.+++++.+|+..|.+++++++||+|   ++|   +++|+||.+||++.+..
T Consensus        64 -------------------~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd---~~~---~liGiit~~dil~~~~~  118 (122)
T d2yzqa2          64 -------------------MLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVD---SKG---KPVGILTVGDIIRRYFA  118 (122)
T ss_dssp             -------------------CCCBSCCCEEETTSBHHHHHHHHHHHTCSEEEEEC---TTS---CEEEEEEHHHHHHHTTT
T ss_pred             -------------------hccccceeecchhhHHHHHHHHHHHcCcEEEEEEe---CCC---EEEEEEEHHHHHHHHHh
Confidence                               12467788999999999999999999999999995   346   79999999999986543

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.54  E-value=2.8e-16  Score=129.14  Aligned_cols=111  Identities=23%  Similarity=0.298  Sum_probs=56.2

Q ss_pred             EEEEcCCccHHHHHHHHHHCCCCeeeeeeC--CCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhhhHHHHHhh
Q 014342          167 VTALDVNLAVKQAFHVLYEQGLPMVPLWDD--FKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISAWKVGKLQL  244 (426)
Q Consensus       167 vi~l~~~~sv~~A~~~l~~~~i~slPV~D~--~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~  244 (426)
                      ++++.++.|+.+|+++|.++++.++||+|+  ..++++||+|.+|+......           .+.. .       ....
T Consensus         6 pvtv~~~~tl~da~~~m~~~~i~~~pVvd~~~~~~~lvGivT~~Di~~~~~~-----------~~~~-~-------~~~~   66 (120)
T d1jr1a4           6 PVVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDIDFLKEE-----------EHDR-F-------LEEI   66 (120)
T ss_dssp             TCC----CCCC--CCBC---------------CTTCCC-----------------------------------------C
T ss_pred             CEEECCcCCHHHHHHHHHHhCCCeEEEeeccccCCeEeeeeeeeeeeehhcc-----------ccCc-e-------eEEE
Confidence            468899999999999999999999999985  25789999999996422110           0000 0       0011


Q ss_pred             ccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHH
Q 014342          245 NLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKC  312 (426)
Q Consensus       245 ~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~  312 (426)
                      +          .+..+++++.+++++.+|+++|.+++++++||+|   ++|   +++||||+.||++.
T Consensus        67 ~----------~~~~~~~~v~~~~~~~~a~~~m~~~~i~~lpVVd---~~~---~lvGiiT~~Di~k~  118 (120)
T d1jr1a4          67 M----------TKREDLVVAPAGITLKEANEILQRSKKGKLPIVN---END---ELVAIIARTDLKKN  118 (120)
T ss_dssp             C----------SBTTTSCCEETTCCHHHHHHHTCSCC---CEEEE---TTT---EEEEEECHHHHHHH
T ss_pred             E----------eeccCceEECCCCCHHHHHHHHHHcCccEEEEEc---CCC---EEEEEEEHHHhhhc
Confidence            1          2356788999999999999999999999999996   346   79999999999985

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=99.53  E-value=6.2e-15  Score=124.90  Aligned_cols=119  Identities=18%  Similarity=0.304  Sum_probs=97.2

Q ss_pred             cccccCCCCCcEEEEcCCccHHHHHHHHHHCC-----CCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhc
Q 014342          156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQG-----LPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELE  230 (426)
Q Consensus       156 ~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~-----i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~  230 (426)
                      |+..+|..  .++++.++.|+.+|++.|.+++     +..+||+|+ +++++|+++..|+...     ..          
T Consensus         2 taG~iM~~--~~itv~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~-~~~l~G~v~~~dl~~~-----~~----------   63 (144)
T d2yvxa2           2 EAGGLMTP--EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDE-KGRLKGVLSLRDLIVA-----DP----------   63 (144)
T ss_dssp             SSGGGCBS--CCCEECSSCBHHHHHHHSSSSCTTSSCSSBCEEBCT-TCBBCCBCBHHHHTTS-----CT----------
T ss_pred             CcccccCC--CCEEECCCCcHHHHHHHHHHhcccccceeeeEEecC-CCCEecccchhhhhhc-----cc----------
Confidence            56788987  7899999999999999998884     889999996 5799999999996421     00          


Q ss_pred             ccchhhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHH
Q 014342          231 THTISAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDIL  310 (426)
Q Consensus       231 ~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil  310 (426)
                      ...+..                   .|.++++++.|++++.+|++.|.+++++++||+|   ++|   +++|+||..||+
T Consensus        64 ~~~v~~-------------------im~~~~~~v~~~~~~~~a~~~m~~~~~~~lPVVd---~~g---~lvGiIt~~Dil  118 (144)
T d2yvxa2          64 RTRVAE-------------------IMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVD---EEG---RLVGIVTVDDVL  118 (144)
T ss_dssp             TCBSTT-------------------TSBSSCCCEESSCCHHHHHHHHHHSCCSEEEEEC---SSC---BEEEEEEHHHHH
T ss_pred             ccchHH-------------------hcccCCccCCCCChHHHHHHHHHHcCCCEEEEEe---ECC---EEEEEEEHHHHH
Confidence            001111                   3577889999999999999999999999999995   346   799999999999


Q ss_pred             HHHHhhc
Q 014342          311 KCICRHF  317 (426)
Q Consensus       311 ~~l~~~~  317 (426)
                      +++....
T Consensus       119 ~~l~~e~  125 (144)
T d2yvxa2         119 DVLEAEA  125 (144)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9887653

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.53  E-value=2.4e-15  Score=125.74  Aligned_cols=129  Identities=9%  Similarity=0.119  Sum_probs=96.3

Q ss_pred             cccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchh
Q 014342          156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTIS  235 (426)
Q Consensus       156 ~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~  235 (426)
                      ++.|+|.+  .+++++++.|+.+|+++|.++++.++||+|+   +++|++|..|++..+........ . ...     ..
T Consensus         2 ~V~~lM~~--~~~~v~~~~tl~~a~~~m~~~~~~~l~V~d~---~lvg~~~~~~~~~~~~~~~~~~~-~-~~~-----~~   69 (135)
T d3ddja2           2 NIETLMIK--NPPILSKEDRLGSAFKKINEGGIGRIIVANE---KIEGLLTTRDLLSTVESYCKDSC-S-QGD-----LY   69 (135)
T ss_dssp             SGGGTCEE--SCCEECTTSBHHHHHHHTTGGGCCEEEEESS---SEEEEEEHHHHHGGGTTCC---C-C-HHH-----HH
T ss_pred             EeeEEeeC--CCeEECCCCcHHHHHHHHHHhCCeEEEEEec---ceeceeeccchhhhhccccccch-h-hhh-----cc
Confidence            46788865  5678999999999999999999999999974   69999999998765432111100 0 000     00


Q ss_pred             hhHH-HHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHH
Q 014342          236 AWKV-GKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCIC  314 (426)
Q Consensus       236 ~~~~-~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~  314 (426)
                      .... ...            ..|+.+++++.+++++.+|+++|.+++++++||+|   ++|   +++|+||.+||++++.
T Consensus        70 ~~~~~~v~------------~im~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd---~~g---~lvGiit~~Dil~~~~  131 (135)
T d3ddja2          70 HISTTPII------------DYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVD---IND---KPVGIVTEREFLLLYK  131 (135)
T ss_dssp             HHHTSBGG------------GTSEESCCCEETTSCHHHHHHHHHHHTCSEEEEEC---TTS---CEEEEEEHHHHGGGGG
T ss_pred             ccccCCHH------------HHhCCccceEEeccccchhhhhhhhcceeEEEEEe---CCC---EEEEEEEHHHHHHHHH
Confidence            0000 011            13578889999999999999999999999999995   346   7999999999998754

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.53  E-value=1.9e-14  Score=119.51  Aligned_cols=122  Identities=16%  Similarity=0.141  Sum_probs=96.9

Q ss_pred             cccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCC-CCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccch
Q 014342          156 TVYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDF-KGRFVGVLSALDFILILRELGTNGSNLTEEELETHTI  234 (426)
Q Consensus       156 ~~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~-~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i  234 (426)
                      ++.|+|.+  .+++++++.|+.+|+++|.++++.++||++.+ .++++|++|..|++..+.......      .     .
T Consensus         2 ~V~dim~~--~~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~~d~~~~~iGi~~~~dl~~~~~~~~~~~------~-----~   68 (131)
T d2riha1           2 RTSELLKR--PPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRLDLD------G-----P   68 (131)
T ss_dssp             BGGGGCCS--CCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTTCCTT------S-----B
T ss_pred             CHHHhccC--CCEEECCCCcHHHHHHHHHHhCCCcEEEEEEcCCCEEEEEEeeeccccccccccccc------c-----c
Confidence            57889966  67899999999999999999999999999532 478999999999987665321100      0     0


Q ss_pred             hhhHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHH
Q 014342          235 SAWKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCIC  314 (426)
Q Consensus       235 ~~~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~  314 (426)
                      ..                   .+..++.++.+++++.+|+++|.+++++++||+|   ++|   +++|+||..||++.+.
T Consensus        69 ~~-------------------~~~~~~~~v~~~~~~~~a~~~m~~~~i~~lpVvd---~~g---~l~Giit~~Dll~~~~  123 (131)
T d2riha1          69 AM-------------------PIANSPITVLDTDPVHVAAEKMRRHNIRHVVVVN---KNG---ELVGVLSIRDLCFERA  123 (131)
T ss_dssp             SG-------------------GGCBCCCEEETTSBHHHHHHHHHHHTCSEEEEEC---TTS---CEEEEEEHHHHHSCHH
T ss_pred             cc-------------------cccccceeEeeecchHHHHHHHHHCCeEEEEEEc---CCC---eEEEEEEHHHHHHHHH
Confidence            00                   0234567899999999999999999999999995   346   7999999999998755


Q ss_pred             h
Q 014342          315 R  315 (426)
Q Consensus       315 ~  315 (426)
                      .
T Consensus       124 ~  124 (131)
T d2riha1         124 I  124 (131)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=99.51  E-value=5.1e-14  Score=115.42  Aligned_cols=117  Identities=16%  Similarity=0.249  Sum_probs=94.3

Q ss_pred             ccccCCCCCcEEEEcCCccHHHHHHHHHHCCCCeeeeeeCCCCcEEEEeehHHHHHHHHHhccCCCCCChhhhcccchhh
Q 014342          157 VYELLPDSGKVTALDVNLAVKQAFHVLYEQGLPMVPLWDDFKGRFVGVLSALDFILILRELGTNGSNLTEEELETHTISA  236 (426)
Q Consensus       157 ~~d~~p~s~~vi~l~~~~sv~~A~~~l~~~~i~slPV~D~~~~~~vGilT~~Dli~~l~~~~~~~~~~~~~~l~~~~i~~  236 (426)
                      +.++|..  .+.+++++.|+.+|++.|.+++.+++||+|+ +++++|++|..|++...         .      ..++..
T Consensus         3 v~~~m~~--~~~~v~~~~tv~ea~~~m~~~~~~~v~Vvd~-~~~~~Gii~~~dl~~~~---------~------~~~v~~   64 (121)
T d1vr9a3           3 VKKWVTQ--DFPMVEESATVRECLHRMRQYQTNECIVKDR-EGHFRGVVNKEDLLDLD---------L------DSSVFN   64 (121)
T ss_dssp             GGGGCBS--CSCEEETTCBHHHHHHHHHHTTSSEEEEECT-TSBEEEEEEGGGGTTSC---------T------TSBSGG
T ss_pred             chhhhcC--CCeEECCCCCHHHHHHhhhhcCcEEEEEEeC-CceeEEEeehhhhhhhh---------c------cccccc
Confidence            4566665  5678899999999999999999999999985 57999999999975210         0      001111


Q ss_pred             hHHHHHhhccccccCCCCCCCCCCceEeCCCCCHHHHHHHHHhCCCCeeEEEecCCCCCCcceEEEEecHHhHHHHHHhh
Q 014342          237 WKVGKLQLNLKRQMDGNGRPCPRPLVQAGPYDSLKEVALKILQNKVATVPIIHSTGPAGSCQEILYLASLSDILKCICRH  316 (426)
Q Consensus       237 ~~~~~~~~~~~~~~~g~~~~~~~~~v~v~~~~sl~~a~~~m~~~~v~~lpVvd~d~~~g~~~~lvGiit~~dil~~l~~~  316 (426)
                                         .|..+++++++++++.+|++.|.++++.++||+|   ++|   +++|+||..|+++++.+.
T Consensus        65 -------------------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd---e~g---~~~Gvit~~dil~~l~~~  119 (121)
T d1vr9a3          65 -------------------KVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVD---EEM---RLKGAVSLHDFLEALIEA  119 (121)
T ss_dssp             -------------------GCBCTTCCEETTSBHHHHHHHHHHCCCSEEEEEC---TTC---BEEEEEEHHHHHHHHHHS
T ss_pred             -------------------cccCccEEECCCCCHHHHHHHHHhcCceeeeeEC---CCC---eEEEEEEHHHHHHHHHHh
Confidence                               1356778899999999999999999999999995   346   799999999999988753

>d2bhua1 b.1.18.2 (A:14-110) Glycosyltrehalose trehalohydrolase, N-terminal domain N {Deinococcus radiodurans [TaxId: 1299]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Glycosyltrehalose trehalohydrolase, N-terminal domain N
species: Deinococcus radiodurans [TaxId: 1299]

Probab=98.58  E-value=2.5e-08  Score=77.28  Aligned_cols=63  Identities=22%  Similarity=0.369  Sum_probs=52.6

Q ss_pred             EEEEE-ecCCCceEEEEeccCCCCCCCCCCCCCCCCCeEEEEEecCCceEEEEEEEcCeeecCCCCCeeeC
Q 014342           22 PVRFI-WPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVSG   91 (426)
Q Consensus        22 ~v~f~-~~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~L~~g~y~ykFiVDg~w~~d~~~p~~~d   91 (426)
                      -++|+ |...|++|.|++.++.    .+|.+.+  +|.|.+++++.+|.+ |+|.|||.|+.||......+
T Consensus        22 g~~FrvwAP~A~~V~l~~~~~~----~~m~~~~--~G~w~~~~~~~~G~~-Y~y~vdg~~~~DPyar~~~~   85 (97)
T d2bhua1          22 GTRFRLWTSTARTVAVRVNGTE----HVMTSLG--GGIYELELPVGPGAR-YLFVLDGVPTPDPYARFLPD   85 (97)
T ss_dssp             CEEEEEECSSCSSEEEEETTEE----EECEEEE--TTEEEEEESCCTTCE-EEEEETTEEECCTTCSCCTT
T ss_pred             eEEEEEECCCCCEeEEEeeCCc----cCCEEcc--CEEEEEEcCCCCCCE-EEEEECCeEccCCchhcCCC
Confidence            47888 5566999999997654    5798876  799999999999986 99999999999998766554

>d1m7xa1 b.1.18.2 (A:117-226) 1,4-alpha-glucan branching enzyme, N-terminal domain N {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: 1,4-alpha-glucan branching enzyme, N-terminal domain N
species: Escherichia coli [TaxId: 562]

Probab=98.45  E-value=3.6e-07  Score=72.44  Aligned_cols=68  Identities=25%  Similarity=0.504  Sum_probs=51.9

Q ss_pred             EEEEE-ecCCCceEEEEeccCCCCCC-CCCCCCCCCCCeEEEEEecCCceEEEEEEE---cCeee--cCCCCCeee
Q 014342           22 PVRFI-WPNGGRRVSLSGSFTRWSEP-MPMSPSEGCPAVFQIICRLPPGHHQYKFYV---DGEWR--HDENQPHVS   90 (426)
Q Consensus        22 ~v~f~-~~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~L~~g~y~ykFiV---Dg~w~--~d~~~p~~~   90 (426)
                      -++|+ |...|++|+|+|+||+|... .+|.+.. ..|.|++.++....-..|||.|   ||+|.  .||-+-...
T Consensus        21 Gv~FrvwAP~A~~V~l~gdfn~~~~~~~~m~~~~-~~G~W~~~i~~~~~G~~Y~y~v~~~~G~~~~~~DPYA~~~e   95 (110)
T d1m7xa1          21 GTRFSVWAPNARRVSVVGQFNYWDGRRHPMRLRK-ESGIWELFIPGAHNGQLYKYEMIDANGNLRLKSDPYAFEAQ   95 (110)
T ss_dssp             EEEEEEECSSCSCEEEEEGGGTSCTTTCBCCCCT-TTTEEEEEEETCCTTCEEEEEEECTTSCEEEECCTTCSSEE
T ss_pred             eEEEEEECCCCCEEEEEEECCCCCCceEEeEEec-CCCcEEEEecCCCCCCEEEEEEEcCCCcEeEEcChhhcccc
Confidence            38886 77789999999999999865 5887543 3689999998766666788877   78765  577765443

>d1kula_ b.3.1.1 (A:) Glucoamylase, granular starch-binding domain {Aspergillus niger [TaxId: 5061]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Starch-binding domain-like
family: Starch-binding domain
domain: Glucoamylase, granular starch-binding domain
species: Aspergillus niger [TaxId: 5061]

Probab=97.87  E-value=1.4e-05  Score=62.75  Aligned_cols=60  Identities=25%  Similarity=0.522  Sum_probs=47.8

Q ss_pred             CCcceEEEEEecCC---CceEEEEeccC---CCCCC--CCCCCCC--CCCCeEEEEEecCCc-eEEEEEEE
Q 014342           17 GSILVPVRFIWPNG---GRRVSLSGSFT---RWSEP--MPMSPSE--GCPAVFQIICRLPPG-HHQYKFYV   76 (426)
Q Consensus        17 ~~~~~~v~f~~~~~---~~~V~l~Gsf~---~W~~~--~~m~~~~--~~~~~~~~~~~L~~g-~y~ykFiV   76 (426)
                      .+..++|+|..+..   |+.|+|+|+..   +|++.  ++|...+  ...+.|+.++.||+| .++|||++
T Consensus         3 ~~~~v~V~F~v~~~t~~Gq~v~vvGs~~~LG~W~~~~a~~l~~~~~~~~~~~w~~~v~~~~~~~~eYKyvi   73 (108)
T d1kula_           3 TPTAVAVTFDLTATTTYGENIYLVGSISQLGDWETSDGIALSADKYTSSDPLWYVTVTLPAGESFEYKFIR   73 (108)
T ss_dssp             TTTCCCEEEECCCCCCSSCEEEEECSSGGGTTTCTTTSEECBCTTCSSSSCCCBCEECCCSCCEECCEEEE
T ss_pred             CCCEEEEEEEEEeEcCCCCEEEEEeChHHhCCCCHHHCccceEccccCCCCCEEEEEEeCCCCeEEEEEEE
Confidence            34678899998763   89999999976   89874  5787542  125689999999998 59999998

>d3bmva2 b.3.1.1 (A:579-683) Cyclodextrin glycosyltransferase, C-terminal domain {Thermoanaerobacterium [TaxId: 28895]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Starch-binding domain-like
family: Starch-binding domain
domain: Cyclodextrin glycosyltransferase, C-terminal domain
species: Thermoanaerobacterium [TaxId: 28895]

Probab=97.86  E-value=1.6e-05  Score=62.02  Aligned_cols=59  Identities=24%  Similarity=0.353  Sum_probs=46.5

Q ss_pred             CcceEEEEEecC----CCceEEEEeccC---CCCCC--CCCCCCCC--CCCeEEEEEecCCce-EEEEEEE
Q 014342           18 SILVPVRFIWPN----GGRRVSLSGSFT---RWSEP--MPMSPSEG--CPAVFQIICRLPPGH-HQYKFYV   76 (426)
Q Consensus        18 ~~~~~v~f~~~~----~~~~V~l~Gsf~---~W~~~--~~m~~~~~--~~~~~~~~~~L~~g~-y~ykFiV   76 (426)
                      ...++|+|....    .|+.|+|+|+..   +|++.  ++|.....  ..+.|++++.||+|. ++|||++
T Consensus         3 ~~~v~V~F~v~~~~t~~Gq~v~vvGs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp~~~~~eYKyv~   73 (105)
T d3bmva2           3 GNQICVRFVVNNASTVYGENVYLTGNVAELGNWDTSKAIGPMFNQVVYQYPTWYYDVSVPAGTTIQFKFIK   73 (105)
T ss_dssp             SSEEEEEEEEESCCCCTTCEEEEEESSGGGTTTCGGGCBCSCBCSSSSCTTSEEEEEEEETTCEEEEEEEE
T ss_pred             CCEEEEEEEEcccccCCCCEEEEEeCcHHHCCCCHHHCcccccccccCCCCeEEEEEEECCCCeEEEEEEE
Confidence            356889998753    489999999965   89863  67876532  246899999999995 9999997

>d1cyga2 b.3.1.1 (A:575-680) Cyclodextrin glycosyltransferase, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Starch-binding domain-like
family: Starch-binding domain
domain: Cyclodextrin glycosyltransferase, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.83  E-value=3e-05  Score=60.46  Aligned_cols=59  Identities=22%  Similarity=0.374  Sum_probs=47.0

Q ss_pred             CcceEEEEEecC----CCceEEEEecc---CCCCCC--CCCCCCCC--CCCeEEEEEecCCc-eEEEEEEE
Q 014342           18 SILVPVRFIWPN----GGRRVSLSGSF---TRWSEP--MPMSPSEG--CPAVFQIICRLPPG-HHQYKFYV   76 (426)
Q Consensus        18 ~~~~~v~f~~~~----~~~~V~l~Gsf---~~W~~~--~~m~~~~~--~~~~~~~~~~L~~g-~y~ykFiV   76 (426)
                      +..++|+|....    .|+.|+|+||.   -+|++.  ++|.....  ..+.|.+++.+|+| .++|||++
T Consensus         3 ~~~v~V~F~v~~~~t~~Gq~v~vvGs~~~LG~W~~~~a~~l~~~~~~~~~~~w~~~v~~~~~~~~eYKyvi   73 (106)
T d1cyga2           3 NDQVSVRFVVNNATTNLGQNIYIVGNVYELGNWDTSKAIGPMFNQVVYSYPTWYIDVSVPEGKTIEFKFIK   73 (106)
T ss_dssp             SCEEEEEEEEESCCCCSSCEEEEEESSGGGBTTCGGGCBCCCBCSSSSCTTCEEEEEEEESSCEEEEEEEE
T ss_pred             CCEEEEEEEEcceEcCCCCEEEEEcCHHHHCCCCHHHCccceeccCcCCCCeEEEEEEeCCCCeEEEEEEE
Confidence            467899999843    48999999996   589864  67876542  24689999999998 59999997

>d1qhoa2 b.3.1.1 (A:577-686) Cyclodextrin glycosyltransferase, C-terminal domain {Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Starch-binding domain-like
family: Starch-binding domain
domain: Cyclodextrin glycosyltransferase, C-terminal domain
species: Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]

Probab=97.74  E-value=4.9e-05  Score=59.63  Aligned_cols=57  Identities=23%  Similarity=0.485  Sum_probs=42.7

Q ss_pred             ceEEEEEecC-----CCceEEEEeccC---CCCCC--CCCCCCCC-----CCCeEEEEEecCCc-eEEEEEEE
Q 014342           20 LVPVRFIWPN-----GGRRVSLSGSFT---RWSEP--MPMSPSEG-----CPAVFQIICRLPPG-HHQYKFYV   76 (426)
Q Consensus        20 ~~~v~f~~~~-----~~~~V~l~Gsf~---~W~~~--~~m~~~~~-----~~~~~~~~~~L~~g-~y~ykFiV   76 (426)
                      .+.|+|+...     .|+.|+|+|+..   +|++.  .+|...+.     ..+.|++++.||+| .++|||++
T Consensus         5 ~~~V~f~v~~~~~T~~Gq~v~ivG~~~~LG~W~~~~a~~l~~~~~~~~~~~~~~W~~~v~lp~~~~~eYKyvi   77 (110)
T d1qhoa2           5 QTSVVFTVKSAPPTNLGDKIYLTGNIPELGNWSTDTSGAVNNAQGPLLAPNYPDWFYVFSVPAGKTIQFKFFI   77 (110)
T ss_dssp             EEEEEEEEESCCCCCTTCEEEEEESSGGGTTTCCCCSSCSSCCBCCCBCTTTTSEEEEEEEETTCEEEEEEEE
T ss_pred             ceEEEEEEeCcccCCCCCEEEEEeCcHHHCCCChhhccccccccCccccccCCeEEEEEEECCCCEEEEEEEE
Confidence            3456666643     389999999986   89875  47765431     24579999999998 59999986

>d1eh9a1 b.1.18.2 (A:1-90) Glycosyltrehalose trehalohydrolase, N-terminal domain N {Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Glycosyltrehalose trehalohydrolase, N-terminal domain N
species: Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]

Probab=97.71  E-value=6.2e-06  Score=62.51  Aligned_cols=62  Identities=21%  Similarity=0.240  Sum_probs=47.2

Q ss_pred             EEEE-ecCCCceEEEEeccCCCCCCCCCCCCCCCCCeEEEEEe-cCCceEEEEEEEcC-eeecCCCCCeee
Q 014342           23 VRFI-WPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDG-EWRHDENQPHVS   90 (426)
Q Consensus        23 v~f~-~~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~-L~~g~y~ykFiVDg-~w~~d~~~p~~~   90 (426)
                      ++|+ |...|++|.|++.+.+|   .+|.+.+  +|.|+++++ +.+| +.|+|.||| .++.||......
T Consensus        11 v~FrvwAP~A~~V~l~~~~~~~---~~m~~~~--~G~W~~~v~~~~~G-~~Y~y~v~~~~~~~DP~s~~~~   75 (90)
T d1eh9a1          11 VIFTLWAPYQKSVKLKVLEKGL---YEMERDE--KGYFTITLNNVKVR-DRYKYVLDDASEIPDPASRYQP   75 (90)
T ss_dssp             EECCEECTTCSCCBCCCSSSCC---CCCCCCT--TSEECCEESSCCSC-CEECEECTTSCEECCTTCSCCT
T ss_pred             EEEEEECCCCCEEEEEeecCCc---ccceeCC--CCEEEEEeCCCCCC-ceeEEEEeCCcCcCCccHhcCC
Confidence            5777 55569999999875443   5788865  799999985 7778 669999987 467888765543

>d1vema1 b.3.1.1 (A:418-516) beta-amylase {Bacillus cereus [TaxId: 1396]}

class: All beta proteins
fold: Prealbumin-like
superfamily: Starch-binding domain-like
family: Starch-binding domain
domain: beta-amylase
species: Bacillus cereus [TaxId: 1396]

Probab=97.56  E-value=6e-05  Score=57.92  Aligned_cols=56  Identities=16%  Similarity=0.231  Sum_probs=41.1

Q ss_pred             eEEEEEecC----CCceEEEEeccC---CCCCCC--CCCCCCCCCCeEEEEEecCCce-EEEEEEE
Q 014342           21 VPVRFIWPN----GGRRVSLSGSFT---RWSEPM--PMSPSEGCPAVFQIICRLPPGH-HQYKFYV   76 (426)
Q Consensus        21 ~~v~f~~~~----~~~~V~l~Gsf~---~W~~~~--~m~~~~~~~~~~~~~~~L~~g~-y~ykFiV   76 (426)
                      +.++|.-.+    .|+.|+|+|+..   +|++..  .|.......+.|++.+.||+|. +||||++
T Consensus         3 v~~~~~v~~~~T~~Gq~v~vvGs~~eLG~W~~~ka~~l~~~~~~~~~W~~~v~lp~~~~~eYKyvi   68 (99)
T d1vema1           3 VMQTIVVKNVPTTIGDTVYITGNRAELGSWDTKQYPIQLYYDSHSNDWRGNVVLPAERNIEFKAFI   68 (99)
T ss_dssp             EEEEEEEESCCCCTTCEEEEEESSGGGTTTCSSSSCEECEEETTTTEEEEEEEEETTCCEEEEEEE
T ss_pred             eeEEEEEeeeEcCCCCEEEEEeCcHHHCCCChhhheeeeeccCCCCCEEEEEEEcCCCcEEEEEEE
Confidence            455666543    489999999988   999752  2222222356899999999995 9999997

>d1bf2a1 b.1.18.2 (A:1-162) Isoamylase, N-terminal domain N {Pseudomonas amyloderamosa [TaxId: 32043]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Isoamylase, N-terminal domain N
species: Pseudomonas amyloderamosa [TaxId: 32043]

Probab=95.43  E-value=0.01  Score=49.08  Aligned_cols=57  Identities=14%  Similarity=0.237  Sum_probs=43.4

Q ss_pred             eEEEEE-ecCCCceEEEEeccCCCCCC----CCCCCCCCCCCeEEEEEe--------cCCceEEEEEEEcCee
Q 014342           21 VPVRFI-WPNGGRRVSLSGSFTRWSEP----MPMSPSEGCPAVFQIICR--------LPPGHHQYKFYVDGEW   80 (426)
Q Consensus        21 ~~v~f~-~~~~~~~V~l~Gsf~~W~~~----~~m~~~~~~~~~~~~~~~--------L~~g~y~ykFiVDg~w   80 (426)
                      ..++|+ |...|++|.|+--.++|...    ++|.+..  +|.|.+.++        +.+|.+ |.|.|+|.|
T Consensus        16 ~~v~F~vwAp~A~~V~L~ly~~~~~~~~~~~~~l~~~~--~gvW~~~v~~~~~~~~g~~~G~~-Y~yrv~Gp~   85 (162)
T d1bf2a1          16 ANITFRVYSSQATRIVLYLYSAGYGVQESATYTLSPAG--SGVWAVTVPVSSIKAAGITGAVY-YGYRAWGPN   85 (162)
T ss_dssp             SEEEEEEECSSCSEEEEEEESSSSSCCCSEEEECEECS--TTEEEEEEEHHHHHHTTCCSCCE-EEEEEEBTT
T ss_pred             eeEEEEEECCCCCEEEEEEEcCCCCCcceeEEEccccc--ccEEEEEecccccccccCCCCcE-EEEEEcccc
Confidence            456885 67779999999977777542    4676643  799999996        677765 788999976

>d2fhfa1 b.1.18.2 (A:288-402) Pullulanase PulA {Klebsiella pneumoniae [TaxId: 573]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Pullulanase PulA
species: Klebsiella pneumoniae [TaxId: 573]

Probab=95.31  E-value=0.0085  Score=46.60  Aligned_cols=55  Identities=16%  Similarity=0.195  Sum_probs=35.7

Q ss_pred             EEEE-ecCCCceEEEEeccCCCCCC--CCCCCCCCCCCeEEEEEe-cCCceEEEEEEEcCe
Q 014342           23 VRFI-WPNGGRRVSLSGSFTRWSEP--MPMSPSEGCPAVFQIICR-LPPGHHQYKFYVDGE   79 (426)
Q Consensus        23 v~f~-~~~~~~~V~l~Gsf~~W~~~--~~m~~~~~~~~~~~~~~~-L~~g~y~ykFiVDg~   79 (426)
                      +.|+ |...|++|.|+-...+|...  .+|.... .+|.|++.++ +.+|.+ |+|.|+|.
T Consensus        19 ~~F~lwAP~A~~V~L~l~~~~~~~~~~~~~~~~~-~~GvW~~~i~~~~~G~~-Y~y~v~~~   77 (115)
T d2fhfa1          19 VTFRVWAPTAQQVELVIYSADKKVIASHPMTRDS-ASGAWSWQGGSDLKGAF-YRYAMTVY   77 (115)
T ss_dssp             EEEEEECTTCSEEEEEEECTTCCEEEEEECEECT-TTCEEEEEECGGGTTCE-EEEEEEEE
T ss_pred             EEEEEECCCCCEEEEEEECCCCCccceeeeeEcC-CCCEEEEEECCCCCCCE-EEEEEEcc
Confidence            5676 55669999998543333321  2444332 3689999985 677875 77777654

>d3c8da1 b.1.18.20 (A:6-150) Enterochelin esterase {Shigella flexneri 2a str. 2457T [TaxId: 198215]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Enterochelin esterase N-terminal domain-like
domain: Enterochelin esterase
species: Shigella flexneri 2a str. 2457T [TaxId: 198215]

Probab=91.39  E-value=1  Score=35.62  Aligned_cols=86  Identities=21%  Similarity=0.322  Sum_probs=59.0

Q ss_pred             CCCcceEEEEEecCC--------CceEEEEeccCCCC----CCCCCCCCCCCCCeEEEEEecCCc-eEEEEEEE-c----
Q 014342           16 VGSILVPVRFIWPNG--------GRRVSLSGSFTRWS----EPMPMSPSEGCPAVFQIICRLPPG-HHQYKFYV-D----   77 (426)
Q Consensus        16 ~~~~~~~v~f~~~~~--------~~~V~l~Gsf~~W~----~~~~m~~~~~~~~~~~~~~~L~~g-~y~ykFiV-D----   77 (426)
                      .+.+.+.|||-|.++        .+.|+|-++--...    ....|.+-.+ ..+|..++.||.. +-.|+|+- .    
T Consensus        18 ~~~~~~~VTFlWR~~~~~~~~sa~~~Vyl~~n~vtDh~~~~~~~~m~rl~g-TDVW~~s~~vpad~rgsY~fip~~~~~~   96 (145)
T d3c8da1          18 LNDEMFEVTFWWRDPQGSEEYSTIKRVWVYITGVTDHHQNSQPQSMQRIAG-TDVWQWTTQLNANWRGSYCFIPTERDDI   96 (145)
T ss_dssp             CCSSEEEEEEEEECTTCSTTTCCCCEEEEEETTTC-------CCBCEECTT-SSEEEEEEEEETTCEEEEEEEEESCCST
T ss_pred             cCCCCEEEEEEEcCccccccccccceEEEecccccccccccChhhhhcCCC-CCeEEEEEEECcccEEEEEEEecCcccC
Confidence            355788999999863        24699977665333    2235888764 7899999999997 68889984 1    


Q ss_pred             -----Ce-------e-------ecCCCCCee-eCCCCCeeeEEEe
Q 014342           78 -----GE-------W-------RHDENQPHV-SGNYGVVNCVYIA  102 (426)
Q Consensus        78 -----g~-------w-------~~d~~~p~~-~d~~G~~nn~~~v  102 (426)
                           |.       |       +.||-||.. .+.-|.-.++++.
T Consensus        97 ~~~~~~~~~~~R~~wr~l~~~a~~DPlNp~~~~~~~g~~~S~l~l  141 (145)
T d3c8da1          97 FSAPSPDRLELREGWRKLLPQAIADPLNPQSWKGGLGHAVSALEM  141 (145)
T ss_dssp             TCCC--CHHHHHHHHHHHGGGCBCCTTCSSEECCSSSSCEEEEEC
T ss_pred             CCcCCccHHHHHHHHHHhhhcccCCCCCCCCCcCCCCCccccccc
Confidence                 10       1       578888853 3556666778777

>d1ji1a1 b.1.18.2 (A:1-122) Maltogenic amylase, N-terminal domain N {Thermoactinomyces vulgaris, TVAI [TaxId: 2026]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Maltogenic amylase, N-terminal domain N
species: Thermoactinomyces vulgaris, TVAI [TaxId: 2026]

Probab=80.38  E-value=2  Score=32.74  Aligned_cols=59  Identities=10%  Similarity=0.060  Sum_probs=38.3

Q ss_pred             CcceEEEEEecC-CCceEEEE-eccCCCCCC-CCCCCCC-CCCC---eEEEEEecCCceEEEEEEE
Q 014342           18 SILVPVRFIWPN-GGRRVSLS-GSFTRWSEP-MPMSPSE-GCPA---VFQIICRLPPGHHQYKFYV   76 (426)
Q Consensus        18 ~~~~~v~f~~~~-~~~~V~l~-Gsf~~W~~~-~~m~~~~-~~~~---~~~~~~~L~~g~y~ykFiV   76 (426)
                      ...++++++=+. +.++|.|. |.=-.|... .+|.+.. ...+   .|+++++++.++..|+|++
T Consensus        29 g~~v~IRLRt~~~dv~~V~l~~~d~~~~~~~~~~m~~~~~~~~~~fdywea~i~~~~~~~~Y~F~l   94 (122)
T d1ji1a1          29 TQSVTLKLRTFKGDITSANIKYWDTADNAFHWVPMVWDSNDPTGTFDYWKGTIPASPSIKYYRFQI   94 (122)
T ss_dssp             TCCEEEEEEEETTCCSEEEEEEEETTTTEEEEEECEEEEECTTSSEEEEEEEECCCSSCEEEEEEE
T ss_pred             CCEEEEEEEcccCCccEEEEEEecCCCCceeeEEEEEEeccCCCcEEEEEEEEEcCCCeEEEEEEE
Confidence            346777777544 46888886 333345432 3565432 1122   7899999999999999997