Citrus Sinensis ID: 014345

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420------
Protein Sequence
MMKFESGYTVETVFDGSKLGIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMAIRKISDSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQYGSSFPLGIAVLLAAGFFGYMLALLQRRVGTIVSSQNDHGTVNTSNSASPYQKPLKSVRPPLIPTEEDEGKQEEEGFFGSLAKLFANTESSVLEILRGIFPHLRKKTLSNQYPSLQKHSTSWPAQESFVIPHEDEPPSIDTRTPTPRKTYAFMSKDAEKIHQLRQSRAFYSGWDGDFQQQKQQHHHRYQSSTPNTYYEQSSEKTNEIVFGAIQEQGAKREAVVIKPVNYGDPIYDHQNIRPRANFTGYSHGY
Secondary Structure (PSIPRED)
cEEEccccEEEEcccccccccccEEEEEcccccEEEEEccccEEEEEEccccEEcccEEEEEccccccccccccccccccccccEEEEcccccEEEEEccccEEEEEccccEEEEEEEcccccccccccccccccccccccEEEEccccEEEEEEccccEEEEEEccccEEEEEEccccccEEEEEccccccccEEEEEEccEEEEEEccccEEEEccccccccccccccccccccccccccccccccccccccccEEEEEcccEEEEEEccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccHHHHHHcccccccccccccccHHHHHHHccccccccccccccccccccccEEEEEEEEcccccccEEEEEcccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEccccEEEEEEccccccccccEEEEcccccEEEEEccccEEEEEcccccEEEEEEEEEEccccccccccccccccEcccccEEEEcccccEEEEEccccEEEEEccccEEEEEEcccccccccccccHHHHHHcccccEEEEcccccEEEEEccccEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccEccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccEEEEccccccEEEEccEEcccccccEEEEEEEccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mmkfesgytvetvfdgsklgiepysvevlpggelLILDSANSNLYRISSslslysrpklvagsaegysghvdgkprearmnhpkgltvddrgniyIADTMNMAIRKisdsgvttiaggkwgrggghvdgpsedakfsndfdVVYIGSSCSLLVIDRGNRAIREIQLHFddcayqygssfPLGIAVLLAAGFFGYMLALLQRRVGTIvssqndhgtvntsnsaspyqkplksvrpplipteedegkqeeeGFFGSLAKLFANTESSVLEILRGIFphlrkktlsnqypslqkhstswpaqesfviphedeppsidtrtptprktyAFMSKDAEKIHQLRQSrafysgwdgdfqqqkqqhhhryqsstpntyyeqssekTNEIVFGAIQEqgakreavvikpvnygdpiydhqnirpranftgyshgy
Flexible Loop (DISEMBL)
mmkfesgytvetvfdgsklgiEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEgysghvdgkprearmnhpkgltvddrgnIYIADTMNMAIRKISDSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQYGSSFPLGIAVLLAAGFFGYMLALLQRRVGTIVSSqndhgtvntsnsaspyqkplksvRPPLIPTEEDEGKQEEEGFFGSLAKLFANTESSVLEILRGIFPHLRKKTLSNQYPSLQKHSTSWPAQESfviphedeppsidtrtptpRKTYAFMSKDAEKIHQLRQSRAFYSGWDGDFQQQKQQHHHRYQSSTPNTYYEQSSEKTNEIVFGAIQEQGAKREAVVIKPVNygdpiydhqnirpranftgyshgy
Low Complexity Region (SEG)
MMKFESGYTVETVFDGSKLGIEPYSVEVLPGGELLILDSAnsnlyrissslslysrPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMAIRKISDSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQYGSSFPLGIAVLLAAGFFGYMLALLQRRVGTIVSSQNDHGTVNTSNSASPYQKPLKSVRPPLIPTeedegkqeeegffgSLAKLFANTESSVLEILRGIFPHLRKKTLSNQYPSLQKHSTSWPAQESFVIPHEDEPPSIDTRTPTPRKTYAFMSKDAEKIHQLRQSRAFYSGWDGDFqqqkqqhhhRYQSSTPNTYYEQSSEKTNEIVFGAIQEQGAKREAVVIKPVNYGDPIYDHQNIRPRANFTGYSHGY
Disordered region (IsUnstruct)
*******YTVETVFDGSKLGIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYS*******************************TVDDRGNIYIADTMNMAIRKISDSGVTTIAGGKWGRGGGHV******AKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQYGSSFPLGIAVLLAAGFFGYMLALLQRRVGTIV*******************************************FFGSLAKLFANTESSVLEILRGIFPHLRKK*************************************************************AFYSGW********************************EIVFGAIQEQGAKREAVVIKPVNYGDPIYDHQNIR************
Disordered Region (DISOPRED)
MMKFESGYTVETVFDGSKLGIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMAIRKISDSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQYGSSFPLGIAVLLAAGFFGYMLALLQRRVGTIVSSQNDHGTVNTSNSASPYQKPLKSVRPP*****************GSLAKLFANTESSVLEILRGIFPHLR******************PA*ESFVI************************************************************************************************VNYGDPIYDHQNIRPRANF*******
Disordered Region (DISEMBL)
********TVETVFDGSKLGIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMAIRKISDSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQYGSSFPLGIAVLLAAGFFGYMLALLQRRVGTIVSSQN*****************LKSVRPPLIPT*********EGFFGSLAKLFANTESSVLEILRGIFPHLRKKTLSNQY***********AQESFVIPHEDEPPSIDTRTPTPRKTYAFMSKDAEKIHQLRQSRAFYSGWDGD*************************EKTNEIVFGAIQEQGAKREAVVIKPVNYGDPIYDHQNIRPRANFTGYSHGY
Disordered Region (DISPRO)
MMKFESGYTVETVFDGSKLGIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMAIRKISDSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQYGSSFPLGIAVLLAAGFFGYMLALLQRRVGTIVSS*****************KPLKSVRPPLIPTEEDEGKQEEEGFFGSLAKLFANTESSVLEILRGIFPHLRKKTLSN******KHSTSWPAQESFVIPHEDEPPSIDTR******T****SKD************F**GWDGDF************SSTPNTYYEQSSEKTNEIVFGAIQEQGAKREAVVIKPVNYGDPIYDHQNIRPRANFTGYSHG*
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMKFESGYTVETVFDGSKLGIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMAIRKISDSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQYGSSFPLGIAVLLAAGFFGYMLALLQRRVGTIVSSQNDHGTVNTSNSASPYQKPLKSVRPPLIPTEEDEGKQEEEGFFGSLAKLFANTESSVLEILRGIFPHLRKKTLSNQYPSLQKHSTSWPAQESFVIPHEDEPPSIDTRTPTPRKTYAFMSKDAEKIHQLRQSRAFYSGWDGDFQQQKQQHHHRYQSSTPNTYYEQSSEKTNEIVFGAIQEQGAKREAVVIKPVNYGDPIYDHQNIRPRANFTGYSHGY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	426
255560011	500	conserved hypothetical protein [Ricinus	0.997	0.85	0.805	0.0
356565931	493	PREDICTED: uncharacterized protein LOC10	0.978	0.845	0.754	0.0
224102017	494	predicted protein [Populus trichocarpa]	0.990	0.854	0.771	0.0
224108107	487	predicted protein [Populus trichocarpa]	0.969	0.848	0.795	0.0
147798773	491	hypothetical protein VITISV_022544 [Viti	0.992	0.861	0.796	0.0
225424717	491	PREDICTED: uncharacterized protein LOC10	0.992	0.861	0.796	0.0
356497860	508	PREDICTED: uncharacterized protein LOC10	0.997	0.836	0.724	1e-179
356501873	507	PREDICTED: uncharacterized protein LOC10	0.992	0.834	0.700	1e-175
296087695	811	unnamed protein product [Vitis vinifera]	0.985	0.517	0.692	1e-158
225452518	677	PREDICTED: uncharacterized protein LOC10	0.981	0.617	0.693	1e-158

>gi|255560011|ref|XP_002521024.1| conserved hypothetical protein [Ricinus communis] gi|223539861|gb|EEF41441.1| conserved hypothetical protein [Ricinus communis]

 Score =  687 bits (1774), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/431 (80%), Positives = 376/431 (87%), Gaps = 6/431 (1%)

Query: 1   MMKFESGYTVETVFDGSKLGIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLV 60
           MMKFE GY VETVFDGSKLGIEPYSVEVLP GELLILDSANSN+YRISSSLSLYSRPKLV
Sbjct: 71  MMKFEGGYNVETVFDGSKLGIEPYSVEVLPNGELLILDSANSNIYRISSSLSLYSRPKLV 130

Query: 61  AGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMAIRKISDSGVTTIAGGKW 120
           AGS +GYSGHVDGK REARMNHPKGLTVDDRGNIYIAD MNMAIRKISD+GVTTIAGGKW
Sbjct: 131 AGSPDGYSGHVDGKHREARMNHPKGLTVDDRGNIYIADAMNMAIRKISDAGVTTIAGGKW 190

Query: 121 GRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQYGSSFP 180
           GRGG HVDG SEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQY S FP
Sbjct: 191 GRGGSHVDGASEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQYESGFP 250

Query: 181 LGIAVLLAAGFFGYMLALLQRRVGTIVSSQNDHGTVNTSNSASPYQKPLKSVRPPLIPTE 240
           LG+AVL+AAGFFGYMLALLQRRVG IVSSQND   + TS S SPYQKPL+SVRPPLIPT 
Sbjct: 251 LGVAVLVAAGFFGYMLALLQRRVGKIVSSQNDRDAMKTSISGSPYQKPLRSVRPPLIPT- 309

Query: 241 EDEGKQEEEGFFGSLAKLFANTESSVLEILRGIFPHLRKKTLSNQYPS-LQKHSTSWPAQ 299
           EDE ++ EEGFFGSL KLFAN  + V+EIL GI P  RKK L+ QY S  QKHS++WP Q
Sbjct: 310 EDEQEKHEEGFFGSLGKLFANAGACVVEILGGIVPGFRKKPLNYQYLSQQQKHSSTWPVQ 369

Query: 300 ESFVIPHEDEPPSIDTRTPTPRKTYAFMSKDAEKIHQLRQSRAFYSGWDGDF----QQQK 355
           +SFVIP EDEPPSI+TRTPTP+KTY FMSKDAEK+HQ RQ RAFYSGWD DF    QQQK
Sbjct: 370 DSFVIPDEDEPPSIETRTPTPKKTYPFMSKDAEKMHQWRQGRAFYSGWDDDFQQQQQQQK 429

Query: 356 QQHHHRYQSSTPNTYYEQSSEKTNEIVFGAIQEQGAKREAVVIKPVNYGDPIYDHQNIRP 415
            QHHHRYQS+ P+TYYEQS EKTNEIVFGA+QEQ  KREA V+KPV+YGD +Y+ Q+IR 
Sbjct: 430 HQHHHRYQSAIPHTYYEQSYEKTNEIVFGAVQEQDGKREAAVVKPVDYGDSVYNQQSIRF 489

Query: 416 RANFTGYSHGY 426
           R +  GYS+G+
Sbjct: 490 RTSSMGYSNGF 500

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356565931|ref|XP_003551189.1| PREDICTED: uncharacterized protein LOC100781836 [Glycine max]

 Score =  657 bits (1695), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/436 (75%), Positives = 369/436 (84%), Gaps = 19/436 (4%)

Query: 1   MMKFESGYTVETVFDGSKLGIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLV 60
           MMKFESGY VETVFDGSKLGIEPY+VEVLP GELLILDSANSN+YRISSSLSLYSRPKLV
Sbjct: 67  MMKFESGYNVETVFDGSKLGIEPYAVEVLPNGELLILDSANSNIYRISSSLSLYSRPKLV 126

Query: 61  AGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMAIRKISDSGVTTIAGGKW 120
           AGSAEGYSGHVDGK REARMNHPKG+TVDDRGNIY+ADT NMAIRKISDSGVTTIAGGKW
Sbjct: 127 AGSAEGYSGHVDGKLREARMNHPKGITVDDRGNIYVADTTNMAIRKISDSGVTTIAGGKW 186

Query: 121 GRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQYGSSFP 180
            RGGGHVDGPSE+AKFS+D DVVY+GSSCSLLVIDRGNRAIREIQLHFDDCAYQYGS FP
Sbjct: 187 NRGGGHVDGPSEEAKFSDDLDVVYVGSSCSLLVIDRGNRAIREIQLHFDDCAYQYGSGFP 246

Query: 181 LGIAVLLAAGFFGYMLALLQRRVGTIVSSQNDHGTVNTSNSASPYQKPLKSVRPPLIPTE 240
           LGIA+L+ AGFFGYMLALLQRR+GTIV+SQ            SPYQKPLKSVRPPLIP+E
Sbjct: 247 LGIAMLVGAGFFGYMLALLQRRLGTIVASQE-------VIPPSPYQKPLKSVRPPLIPSE 299

Query: 241 EDEGKQEEEGFFGSLAKLFANTESSVLEILRGIFPHLRKKTLSNQY---PSL---QKHST 294
            +  KQ EEGFFGSL KL ANT +S++EI+ G+FP  R+K+L  Q+   P +   QK   
Sbjct: 300 YEPDKQ-EEGFFGSLGKLLANTGASMVEIIGGLFPSFRRKSLRYQFQRQPLIQQPQKQVN 358

Query: 295 SWPAQESFVIPHEDEPPSIDTRTPTPRKTYAFMSKDAEKIHQLRQSRAFYSGWDGDF--- 351
           +WP QESFVIP ED+PPSIDTR PTPRKTY FMSKDAEK+ QLRQSRAFYSGWDGD    
Sbjct: 359 AWPVQESFVIPDEDQPPSIDTRAPTPRKTYPFMSKDAEKMQQLRQSRAFYSGWDGDLQQQ 418

Query: 352 -QQQKQQHHHRYQSSTPNTYYEQSSEKTNEIVFGAIQEQGAKREAVVIKPVNYGDPIYDH 410
            QQQ++ H H+Y+SS P+TYYEQS E TNEIVFGA++EQ  K+E+VVIKPV+YG+ +Y+H
Sbjct: 419 QQQQQKHHRHQYRSSIPHTYYEQSHETTNEIVFGAVEEQDRKQESVVIKPVDYGESMYEH 478

Query: 411 QNIRPRANFTGYSHGY 426
            NIR R +  GY + Y
Sbjct: 479 -NIRSRMSSMGYGYRY 493

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224102017|ref|XP_002312513.1| predicted protein [Populus trichocarpa] gi|222852333|gb|EEE89880.1| predicted protein [Populus trichocarpa]

 Score =  652 bits (1681), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/433 (77%), Positives = 366/433 (84%), Gaps = 11/433 (2%)

Query: 1   MMKFESGYTVETVFDGSKLGIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLV 60
           MMKFESGYTVETVFDGSKLGIEPYSV+VLP GELLILDSANSN+YRIS+SLSLYSRPKLV
Sbjct: 66  MMKFESGYTVETVFDGSKLGIEPYSVQVLPSGELLILDSANSNIYRISASLSLYSRPKLV 125

Query: 61  AGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMAIRKISDSGVTTIAGGKW 120
           AGS EGYSGHVDGK REA+MNHPKGLTVDDRGNIY+ADTMNMAIRKISD+GVTTIAGGKW
Sbjct: 126 AGSHEGYSGHVDGKLREAKMNHPKGLTVDDRGNIYVADTMNMAIRKISDAGVTTIAGGKW 185

Query: 121 GRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQYGSSFP 180
           GR G HVDG SEDA FSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQYGS FP
Sbjct: 186 GR-GSHVDGASEDANFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQYGSGFP 244

Query: 181 LGIAVLLAAGFFGYMLALLQRRVGTIVSSQNDHGTVNTSNSASPYQKPLKSVRPPLIPTE 240
           LGIAVL+AAGFFGYMLALLQRRVG IVS QN   ++  S +  PYQKP+KS+RPPLIPT 
Sbjct: 245 LGIAVLVAAGFFGYMLALLQRRVGMIVSPQNV--SMKMSTTGIPYQKPIKSIRPPLIPT- 301

Query: 241 EDEGKQEEEGFFGSLAKLFANTESSVLEILRGIFPHLRKKTLSNQYPSLQKHS------- 293
           EDE ++ EEG FGSL KLF NT +SV+EI  GI P  RKK +S QY + Q+         
Sbjct: 302 EDEQEKHEEGLFGSLGKLFINTGASVMEIFGGIVPSFRKKPVSYQYQNYQQQQYQHQKQL 361

Query: 294 TSWPAQESFVIPHEDEPPSIDTRTPTPRKTYAFMSKDAEKIHQLRQSRAFYSGWDGDFQQ 353
           +SWP Q+SFVIP EDEPPSI++RTPTPRKTY FMSKD EK+HQ RQ R+ YSGWDGD QQ
Sbjct: 362 SSWPVQDSFVIPDEDEPPSIESRTPTPRKTYPFMSKDTEKMHQWRQGRSIYSGWDGDLQQ 421

Query: 354 QKQQHHHRYQSSTPNTYYEQSSEKTNEIVFGAIQEQGAKREAVVIKPVNYGDPIYDHQNI 413
           Q+ QHHHRYQSSTP+TYYEQS EKTNEIVFGA+QEQ  K E +V KPV+YGDP + H NI
Sbjct: 422 QQHQHHHRYQSSTPHTYYEQSYEKTNEIVFGAVQEQDGKYETMVTKPVDYGDPKHYHHNI 481

Query: 414 RPRANFTGYSHGY 426
           R R N   Y+ GY
Sbjct: 482 RSRTNSLHYAKGY 494

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224108107|ref|XP_002314724.1| predicted protein [Populus trichocarpa] gi|222863764|gb|EEF00895.1| predicted protein [Populus trichocarpa]

 Score =  652 bits (1681), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/421 (79%), Positives = 362/421 (85%), Gaps = 8/421 (1%)

Query: 1   MMKFESGYTVETVFDGSKLGIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLV 60
           MMKFESGYTVETVFDGSKLGIEPYSV+VLP GELLILDS NSN+YR+SSSLSLYSRPKLV
Sbjct: 69  MMKFESGYTVETVFDGSKLGIEPYSVQVLPSGELLILDSVNSNIYRMSSSLSLYSRPKLV 128

Query: 61  AGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMAIRKISDSGVTTIAGGKW 120
           AGS EGYSGHVDGK REA+MNHPKGLTVDDRGNIYIADTMNMAIRKISD+GVTTIAGGKW
Sbjct: 129 AGSHEGYSGHVDGKLREAKMNHPKGLTVDDRGNIYIADTMNMAIRKISDAGVTTIAGGKW 188

Query: 121 GRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQYGSSFP 180
           GR G HVDG SEDAKFSNDFDV+YIGSSCSLLVIDRGN+AIREIQLHFDDCAYQYGS FP
Sbjct: 189 GR-GSHVDGASEDAKFSNDFDVLYIGSSCSLLVIDRGNQAIREIQLHFDDCAYQYGSGFP 247

Query: 181 LGIAVLLAAGFFGYMLALLQRRVGTIVSSQNDHGTVNTSNSASPYQKPLKSVRPPLIPTE 240
           LGIAVLLAAGFFGYMLALLQRRVG IVS QN    + TS + +PYQ P+KS RPPLIPT 
Sbjct: 248 LGIAVLLAAGFFGYMLALLQRRVGMIVSPQNV--AMETSTTGNPYQ-PIKSFRPPLIPT- 303

Query: 241 EDEGKQEEEGFFGSLAKLFANTESSVLEILRGIFPHLRKKTLSNQYPSLQKHSTSWPAQE 300
           EDE ++ EEG FGSL KLF NT +S+ EIL GI P  RKK  + QY + Q+ STSWP Q+
Sbjct: 304 EDEQEKHEEGLFGSLGKLFINTWASIAEILGGIVPSFRKKPPNYQYQNYQQQSTSWPVQD 363

Query: 301 SFVIPHEDEPPSIDTRTPTPRKTYAFMSKDAEKIHQLRQSRAFYSGWDGDF---QQQKQQ 357
           SFVIP EDEPPS +TRTPTPRKTY FMSKD EK+HQ RQSR+ YSGWDGDF   QQQKQQ
Sbjct: 364 SFVIPDEDEPPSTETRTPTPRKTYPFMSKDTEKMHQWRQSRSIYSGWDGDFQQQQQQKQQ 423

Query: 358 HHHRYQSSTPNTYYEQSSEKTNEIVFGAIQEQGAKREAVVIKPVNYGDPIYDHQNIRPRA 417
           +HHRYQSSTP+TYYEQS EKTNEIVFGA+QEQ  K    VI PVNYGDPI++  NIR R 
Sbjct: 424 YHHRYQSSTPHTYYEQSYEKTNEIVFGAVQEQDVKHGTTVILPVNYGDPIHNRHNIRSRT 483

Query: 418 N 418
           N
Sbjct: 484 N 484

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147798773|emb|CAN69794.1| hypothetical protein VITISV_022544 [Vitis vinifera]

 Score =  651 bits (1680), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/432 (79%), Positives = 374/432 (86%), Gaps = 9/432 (2%)

Query: 1   MMKFESGYTVETVFDGSKLGIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLV 60
           MMKFESGYTVETVFDGSKLGIEPYS+EVL  GELLILDSANSNLY+ISSSLS Y+RPKLV
Sbjct: 63  MMKFESGYTVETVFDGSKLGIEPYSIEVLGSGELLILDSANSNLYKISSSLSQYTRPKLV 122

Query: 61  AGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMAIRKISDSGVTTIAGGKW 120
            GSAEGYSGHVDG+ REARMNHPKGLTVDDRGNIY+ADT+NMAIRKISD+GVTTIAGGK 
Sbjct: 123 TGSAEGYSGHVDGRLREARMNHPKGLTVDDRGNIYVADTLNMAIRKISDAGVTTIAGGKL 182

Query: 121 GRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQYGSSFP 180
           GRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGN+AIREIQLHFDDCAYQYGS FP
Sbjct: 183 GRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNQAIREIQLHFDDCAYQYGSGFP 242

Query: 181 LGIAVLLAAGFFGYMLALLQRRVGTIVSSQNDHGTVNTSNSASPYQKPLKSVRPPLIPTE 240
           LGIAVL+AAGFFGYMLALLQRRVGTIVSS+ND    N S + S YQKPLKSVRPPLIPT 
Sbjct: 243 LGIAVLIAAGFFGYMLALLQRRVGTIVSSENDQA--NPSIAHSTYQKPLKSVRPPLIPT- 299

Query: 241 EDEGKQEEEGFFGSLAKLFANTESSVLEILRGIFPHLRKKTLS------NQYPSLQKHST 294
           EDE +++EEGFFGSL KLF    + + EI  G+ P L+KK  S        Y   QKHS 
Sbjct: 300 EDEMEKQEEGFFGSLGKLFVYAGACIAEIFGGMIPGLKKKPHSYQYQNQQNYQQPQKHSN 359

Query: 295 SWPAQESFVIPHEDEPPSIDTRTPTPRKTYAFMSKDAEKIHQLRQSRAFYSGWDGDFQQQ 354
           +WP QESFVIP EDEPPSIDTRTPTPRKTY FMSKDAEK+HQ+RQSRAF SGWDGDFQQQ
Sbjct: 360 AWPLQESFVIPDEDEPPSIDTRTPTPRKTYPFMSKDAEKMHQIRQSRAFVSGWDGDFQQQ 419

Query: 355 KQQHHHRYQSSTPNTYYEQSSEKTNEIVFGAIQEQGAKREAVVIKPVNYGDPIYDHQNIR 414
           ++QHHHR+ SSTP+TYYEQ+ EKTNEIVFGA+QEQ  +RE V IKPVNYGDPIYDH NIR
Sbjct: 420 QKQHHHRHYSSTPHTYYEQNCEKTNEIVFGAVQEQQVRREPVDIKPVNYGDPIYDHHNIR 479

Query: 415 PRANFTGYSHGY 426
            R +  GY+ GY
Sbjct: 480 SRIHSKGYTQGY 491

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424717|ref|XP_002265467.1| PREDICTED: uncharacterized protein LOC100263777 [Vitis vinifera] gi|296086531|emb|CBI32120.3| unnamed protein product [Vitis vinifera]

 Score =  651 bits (1679), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/432 (79%), Positives = 374/432 (86%), Gaps = 9/432 (2%)

Query: 1   MMKFESGYTVETVFDGSKLGIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLV 60
           MMKFESGYTVETVFDGSKLGIEPYS+EVL  GELLILDSANSNLY+ISSSLS Y+RPKLV
Sbjct: 63  MMKFESGYTVETVFDGSKLGIEPYSIEVLGSGELLILDSANSNLYKISSSLSQYTRPKLV 122

Query: 61  AGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMAIRKISDSGVTTIAGGKW 120
            GSAEGYSGHVDG+ REARMNHPKGLTVDDRGNIY+ADT+NMAIRKISD+GVTTIAGGK 
Sbjct: 123 TGSAEGYSGHVDGRLREARMNHPKGLTVDDRGNIYVADTLNMAIRKISDAGVTTIAGGKL 182

Query: 121 GRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQYGSSFP 180
           GRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGN+AIREIQLHFDDCAYQYGS FP
Sbjct: 183 GRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNQAIREIQLHFDDCAYQYGSGFP 242

Query: 181 LGIAVLLAAGFFGYMLALLQRRVGTIVSSQNDHGTVNTSNSASPYQKPLKSVRPPLIPTE 240
           LGIAVL+AAGFFGYMLALLQRRVGTIVSS+ND    N S + S YQKPLKSVRPPLIPT 
Sbjct: 243 LGIAVLIAAGFFGYMLALLQRRVGTIVSSENDQA--NPSIAHSTYQKPLKSVRPPLIPT- 299

Query: 241 EDEGKQEEEGFFGSLAKLFANTESSVLEILRGIFPHLRKKTLS------NQYPSLQKHST 294
           EDE +++EEGFFGSL KLF    + + EI  G+ P L+KK  S        Y   QKHS 
Sbjct: 300 EDEMERQEEGFFGSLGKLFVYAGACIAEIFGGMIPGLKKKPHSYQYQNQQNYQQPQKHSN 359

Query: 295 SWPAQESFVIPHEDEPPSIDTRTPTPRKTYAFMSKDAEKIHQLRQSRAFYSGWDGDFQQQ 354
           +WP QESFVIP EDEPPSIDTRTPTPRKTY FMSKDAEK+HQ+RQSRAF SGWDGDFQQQ
Sbjct: 360 AWPLQESFVIPDEDEPPSIDTRTPTPRKTYPFMSKDAEKMHQIRQSRAFVSGWDGDFQQQ 419

Query: 355 KQQHHHRYQSSTPNTYYEQSSEKTNEIVFGAIQEQGAKREAVVIKPVNYGDPIYDHQNIR 414
           ++QHHHR+ SSTP+TYYEQ+ EKTNEIVFGA+QEQ  +RE V IKPVNYGDPIYDH NIR
Sbjct: 420 QKQHHHRHYSSTPHTYYEQNCEKTNEIVFGAVQEQQVRREPVDIKPVNYGDPIYDHHNIR 479

Query: 415 PRANFTGYSHGY 426
            R +  GY+ GY
Sbjct: 480 SRIHSKGYTQGY 491

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497860|ref|XP_003517774.1| PREDICTED: uncharacterized protein LOC100799483 [Glycine max]

 Score =  634 bits (1634), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 324/447 (72%), Positives = 362/447 (80%), Gaps = 22/447 (4%)

Query: 1   MMKFESGYTVETVFDGSKLGIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLV 60
           MMKFESGYTVETVFDGSKLGIEPY+VEVLP GELLILDSANSN+YRISSSLSL SRPKLV
Sbjct: 63  MMKFESGYTVETVFDGSKLGIEPYAVEVLPNGELLILDSANSNIYRISSSLSLNSRPKLV 122

Query: 61  AGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMAIRKISDSGVTTIAGGKW 120
           AGSAEGYSGHVDG+ REARMNHPKG+TVD+RGNIY+AD MNMAIRKISDSGVTTIAGGKW
Sbjct: 123 AGSAEGYSGHVDGRFREARMNHPKGITVDNRGNIYVADIMNMAIRKISDSGVTTIAGGKW 182

Query: 121 GRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQYGSSFP 180
            RGGGHVDGPSE+AKFSNDFDVVY+GSSCSLLVIDRGN+AIREIQLHFDDCAYQY + FP
Sbjct: 183 SRGGGHVDGPSEEAKFSNDFDVVYVGSSCSLLVIDRGNQAIREIQLHFDDCAYQYENGFP 242

Query: 181 LGIAVLLAAGFFGYMLALLQRRVGTIVSSQNDHGTVNTSN-SASPYQKPLKSVRPPLIPT 239
           LGIAVL+ AGFFGYMLALLQRR+GTIV+SQ+     + S  S SPYQKPL S RPPLIP+
Sbjct: 243 LGIAVLIGAGFFGYMLALLQRRLGTIVASQDVSAHSSMSGISPSPYQKPLNSARPPLIPS 302

Query: 240 EEDEGKQEEEGFFGSLAKLFANTESSVLEILRGIFPHLRK---KTLSNQYPSL----QKH 292
            EDE  ++EE FFGS+ KL  N  +SV+EI+  +FP  RK   ++   Q P L    QK 
Sbjct: 303 -EDESDKQEESFFGSIGKLLTNAGASVVEIMGALFPGFRKNPPQSYEFQSPPLFQQPQKQ 361

Query: 293 STSWPAQESFVIPHEDEPPSIDTRTPTPRKTYAFMSKDAEKIHQLRQSRAFYSGWDGD-- 350
             +WP QESFVIP EDEPPSID RTPTPRKTYAFMSKDAEK+ QL QSRAFYSGWDGD  
Sbjct: 362 VNAWPVQESFVIPDEDEPPSIDPRTPTPRKTYAFMSKDAEKMQQLWQSRAFYSGWDGDLQ 421

Query: 351 -----------FQQQKQQHHHRYQSSTPNTYYEQSSEKTNEIVFGAIQEQGAKREAVVIK 399
                       QQQ + H H+Y SS P+TYYEQS E+TNEIVFGA+QEQ  K+  VVIK
Sbjct: 422 QQQQLKHQQQQQQQQLKHHRHQYHSSVPHTYYEQSHEETNEIVFGAVQEQDGKKGTVVIK 481

Query: 400 PVNYGDPIYDHQNIRPRANFTGYSHGY 426
           PV+YG  +YDH  IRPR +  G+ + Y
Sbjct: 482 PVDYGQSVYDHHYIRPRISSMGHINKY 508

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501873|ref|XP_003519748.1| PREDICTED: uncharacterized protein LOC100797570 [Glycine max]

 Score =  619 bits (1597), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 314/448 (70%), Positives = 354/448 (79%), Gaps = 25/448 (5%)

Query: 1   MMKFESGYTVETVFDGSKLGIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLV 60
           MMKFESGYTVETVFDGSKLGIEPY+VEVL  GELLILDSANSN+YRISSSLSL +RPKLV
Sbjct: 63  MMKFESGYTVETVFDGSKLGIEPYAVEVLANGELLILDSANSNIYRISSSLSLNTRPKLV 122

Query: 61  AGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMAIRKISDSGVTTIAGGKW 120
           AGSAEGYSGHVDG+ REARMNHPKG+ VD+RGNIYIAD MNMAIRKISDSGVTTIAGGKW
Sbjct: 123 AGSAEGYSGHVDGRLREARMNHPKGIAVDNRGNIYIADIMNMAIRKISDSGVTTIAGGKW 182

Query: 121 GRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQYGSSFP 180
            RGGGH+DGPSE+AKFSNDFDVVYIGSSCSLLVIDRGN+AIREIQLHFDDCAYQY +   
Sbjct: 183 SRGGGHIDGPSEEAKFSNDFDVVYIGSSCSLLVIDRGNQAIREIQLHFDDCAYQYENGLT 242

Query: 181 LGIAVLLAAGFFGYMLALLQRRVGTIVSSQNDHGTVNTSNSASPYQKPLKSVRPPLIPTE 240
           LGIA+L+ AGFFGYMLALLQ R+GTIV+SQ+  G   +  S SPYQKPLKSVRPPLIP+ 
Sbjct: 243 LGIAMLVGAGFFGYMLALLQHRLGTIVASQD--GAAMSGISPSPYQKPLKSVRPPLIPS- 299

Query: 241 EDEGKQEEEGFFGSLAKLFANTESSVLEILRGIFPHLRKKTLSNQYPSL------QKHST 294
           EDE  ++EE F  S+ KL  N  +SV+EI+  +FP  RKK  S ++ S       QK   
Sbjct: 300 EDESDKQEESFIRSIGKLLTNAGASVVEIMGALFPGFRKKPQSYEFQSQPLFQQPQKQVN 359

Query: 295 SWPAQESFVIPHEDEPPSIDTRTPTPRKTYAFMSKDAEKIHQLRQSRAFYSGWDGD---- 350
           +WP QESFVIP EDEPPSID R+PTPRKTYAFMS+DAEK+ QL QS AFYSGW GD    
Sbjct: 360 AWPVQESFVIPDEDEPPSIDPRSPTPRKTYAFMSQDAEKMPQLWQSHAFYSGWGGDLQQQ 419

Query: 351 ------------FQQQKQQHHHRYQSSTPNTYYEQSSEKTNEIVFGAIQEQGAKREAVVI 398
                        QQQ + H H Y SS P+TYYEQS E+ NEIVFGA+QEQ  K+E VVI
Sbjct: 420 QQLKLQQQQQQQQQQQLKHHRHLYHSSVPHTYYEQSHEEINEIVFGAVQEQEGKKETVVI 479

Query: 399 KPVNYGDPIYDHQNIRPRANFTGYSHGY 426
           KPV+YG  +YDH  IRPR +  G+ + Y
Sbjct: 480 KPVDYGQSLYDHHYIRPRNSSMGHINKY 507

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087695|emb|CBI34951.3| unnamed protein product [Vitis vinifera]

 Score =  564 bits (1453), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 306/442 (69%), Positives = 347/442 (78%), Gaps = 22/442 (4%)

Query: 2   MKFESGYTVETVFDGSKLGIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVA 61
           M FE GYTVETVFDGSKLGIEPYS+EV   GELL+LDS NSN+Y+ISS LS YSRPKLVA
Sbjct: 63  MNFEDGYTVETVFDGSKLGIEPYSLEVSTSGELLVLDSENSNIYKISSPLSRYSRPKLVA 122

Query: 62  GSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMAIRKISDSGVTTIAGGKWG 121
           GS +GYSGHVDGK REARMNHPKGLT+D+RGNIYIADTMNMAIRKISD+GVTTIAGGKWG
Sbjct: 123 GSPDGYSGHVDGKLREARMNHPKGLTMDERGNIYIADTMNMAIRKISDAGVTTIAGGKWG 182

Query: 122 RGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQYGSSFPL 181
           RGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGN+AIREIQLH++DCAYQY  SF L
Sbjct: 183 RGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNQAIREIQLHYEDCAYQYNGSFHL 242

Query: 182 GIAVLLAAGFFGYMLALLQRRVGTIVSSQNDHGT-VNTSNSASPYQKPLKSVRPPLIPTE 240
           GIAVL+AAGFFGYMLALLQRRV  + SSQ D  T +        YQ+PLKSVR PLIPT 
Sbjct: 243 GIAVLVAAGFFGYMLALLQRRVAAMFSSQYDSSTPMKKGMPPESYQRPLKSVRAPLIPT- 301

Query: 241 EDEGKQEEEGFFGSLAKLFANTESSVLEILRGIFPHLRKK------TLSNQYPSLQKHST 294
           EDE ++ +EGFFGSL +LF NT S++ EI  G+F   RKK            P++  HS 
Sbjct: 302 EDEYEKADEGFFGSLGRLFLNTGSTLAEIFGGLFSGSRKKPPHQQIQQQYGQPNV--HSN 359

Query: 295 SWPAQESFVIPHEDEPPSIDTRTPTPRKTYAFMSKDAEKIHQLRQSRAFYS-GWDGD--- 350
            WP QES+VIP EDEPPSI++R PTP+KTY FM+ + EK H  RQSR FYS GWDG+   
Sbjct: 360 GWPMQESYVIPDEDEPPSIESRAPTPKKTYPFMTPEMEKTHHFRQSRTFYSNGWDGNYQQ 419

Query: 351 -------FQQQKQQHHHRYQSSTPNTYYEQSSEKTNEIVFGAIQEQGAKREAVVIKPVNY 403
                   +QQ QQHH ++ SS P TYYEQS E  NEIVFGA+QEQ  +REA+VIK V+Y
Sbjct: 420 LQQKQIQQKQQYQQHHQKHYSSNPQTYYEQSCETKNEIVFGAVQEQDGRREAMVIKAVDY 479

Query: 404 GDPIYDHQNIRPRANFTG-YSH 424
           GDP+Y+H NIRPR N+   YSH
Sbjct: 480 GDPVYNHHNIRPRLNYMASYSH 501

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452518|ref|XP_002274991.1| PREDICTED: uncharacterized protein LOC100266244 [Vitis vinifera]

 Score =  563 bits (1452), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 305/440 (69%), Positives = 348/440 (79%), Gaps = 22/440 (5%)

Query: 2   MKFESGYTVETVFDGSKLGIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVA 61
           M FE GYTVETVFDGSKLGIEPYS+EV   GELL+LDS NSN+Y+ISS LS YSRPKLVA
Sbjct: 63  MNFEDGYTVETVFDGSKLGIEPYSLEVSTSGELLVLDSENSNIYKISSPLSRYSRPKLVA 122

Query: 62  GSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMAIRKISDSGVTTIAGGKWG 121
           GS +GYSGHVDGK REARMNHPKGLT+D+RGNIYIADTMNMAIRKISD+GVTTIAGGKWG
Sbjct: 123 GSPDGYSGHVDGKLREARMNHPKGLTMDERGNIYIADTMNMAIRKISDAGVTTIAGGKWG 182

Query: 122 RGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQYGSSFPL 181
           RGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGN+AIREIQLH++DCAYQY  SF L
Sbjct: 183 RGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNQAIREIQLHYEDCAYQYNGSFHL 242

Query: 182 GIAVLLAAGFFGYMLALLQRRVGTIVSSQNDHGTVNTSNSASPYQKPLKSVRPPLIPTEE 241
           GIAVL+AAGFFGYMLALLQRRV  + SSQ  + +     +   YQ+PLKSVR PLIPT E
Sbjct: 243 GIAVLVAAGFFGYMLALLQRRVAAMFSSQ--YVSDPAFFTLQSYQRPLKSVRAPLIPT-E 299

Query: 242 DEGKQEEEGFFGSLAKLFANTESSVLEILRGIFPHLRKK------TLSNQYPSLQKHSTS 295
           DE ++ +EGFFGSL +LF NT S++ EI  G+F   RKK            P++  HS  
Sbjct: 300 DEYEKADEGFFGSLGRLFLNTGSTLAEIFGGLFSGSRKKPPHQQIQQQYGQPNV--HSNG 357

Query: 296 WPAQESFVIPHEDEPPSIDTRTPTPRKTYAFMSKDAEKIHQLRQSRAFYS-GWDGD---- 350
           WP QES+VIP EDEPPSI++R PTP+KTY FM+ + EK H  RQSR FYS GWDG+    
Sbjct: 358 WPMQESYVIPDEDEPPSIESRAPTPKKTYPFMTPEMEKTHHFRQSRTFYSNGWDGNYQQL 417

Query: 351 ------FQQQKQQHHHRYQSSTPNTYYEQSSEKTNEIVFGAIQEQGAKREAVVIKPVNYG 404
                  +QQ QQHH ++ SS P TYYEQS E  NEIVFGA+QEQ  +REA+VIK V+YG
Sbjct: 418 QQKQIQQKQQYQQHHQKHYSSNPQTYYEQSCETKNEIVFGAVQEQDGRREAMVIKAVDYG 477

Query: 405 DPIYDHQNIRPRANFTGYSH 424
           DP+Y+H NIRPR N+ GYSH
Sbjct: 478 DPVYNHHNIRPRLNYMGYSH 497

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	426
TAIR|locus:2016189	509	AT1G70280 "AT1G70280" [Arabido	0.971	0.813	0.598	1.1e-128
TAIR|locus:2199862	545	AT1G23880 "AT1G23880" [Arabido	0.953	0.744	0.578	1.6e-116
TAIR|locus:2147780	754	AT5G14890 [Arabidopsis thalian	0.931	0.526	0.481	5.9e-89
TAIR|locus:2099357	493	AT3G14860 "AT3G14860" [Arabido	0.927	0.801	0.359	8.6e-56
TAIR|locus:2199872	400	AT1G23890 "AT1G23890" [Arabido	0.384	0.41	0.461	8.3e-35

TAIR|locus:2016189 AT1G70280 "AT1G70280" [Arabidopsis thaliana (taxid:3702)]

 Score = 1263 (449.7 bits), Expect = 1.1e-128, P = 1.1e-128
 Identities = 270/451 (59%), Positives = 310/451 (68%)

Query:     1 MMKFESGYTVETVFDGSKLGIEPYSVEVLPGGELLILDSAXXXXXXXXXXXXXXXXPKLV 60
             M+KFE+GY+VETVFDGSKLGIEPYS+EVLP GELLILDS                 P+LV
Sbjct:    63 MVKFENGYSVETVFDGSKLGIEPYSIEVLPNGELLILDSENSNIYKISSSLSLYSRPRLV 122

Query:    61 AGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMAIRKISDSGVTTIAGGKW 120
              GS EGY GHVDG+ R+A++NHPKGLTVDDRGNIY+ADT+N AIRKIS+ GVTTIAGGK 
Sbjct:   123 TGSPEGYPGHVDGRLRDAKLNHPKGLTVDDRGNIYVADTVNNAIRKISEGGVTTIAGGKT 182

Query:   121 GRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQYGSSFP 180
              R GGHVDGPSEDAKFSNDFDVVY+GSSCSLLVIDRGN+AIREIQLHFDDCAYQYGS FP
Sbjct:   183 VRNGGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNKAIREIQLHFDDCAYQYGSGFP 242

Query:   181 LGIAVLLAAGFFGYMLALLQRRVGTIVSSQNDHGTVNTSNSASPYQKPLKSVRPPLIPTX 240
             LGIAVL+AAGFFGYMLALLQRRVG+IVSS ND         A P QKP+K  RP LIP  
Sbjct:   243 LGIAVLVAAGFFGYMLALLQRRVGSIVSSHNDQEMFE----ADPDQKPMKHSRPSLIPAG 298

Query:   241 XXXXXXXXXXXXXSLAKLFANTESSVLEILRGIFPHLRKKTLSN--QYPSLQKHS----- 293
                          SL KL +N   SV+EILR      +K+T ++  QY    K S     
Sbjct:   299 DEQLEKQEETFVVSLGKLVSNAWESVMEILR------KKQTGTSFQQYHGTTKQSAAFST 352

Query:   294 -TSWPAQESFVIPHEDEPPSIDTRTPTPRKTYAFMSKDAEKIHQLRQSRAFYSGWDGDFX 352
              T WP QESFVI  ED PP ++ R PTPRKTYAFMSKDAEK+ QLRQSRAFYS WD +F 
Sbjct:   353 STPWPIQESFVIRDEDGPPPVEPRNPTPRKTYAFMSKDAEKMQQLRQSRAFYSSWDAEFP 412

Query:   353 XXXXXXXXRYQ----------------SSTPNTYYEQSSEKTNEIVFGAIQEQGAKREAV 396
                     ++Q                SS P+TYYEQ SEK+NEIVFGA+QEQ +KR A 
Sbjct:   413 NQQQQQQKQHQKHQHQQQQQQQHRRHYSSIPHTYYEQDSEKSNEIVFGAVQEQSSKRVAK 472

Query:   397 VI-KPVNYGDPIYDHQNIRPRANFTGYSHGY 426
                KP+  GD +  + N +   ++  +S  Y
Sbjct:   473 PKPKPIESGDQM--NNNTQQNLHYRSHSVSY 501

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

TAIR|locus:2199862 AT1G23880 "AT1G23880" [Arabidopsis thaliana (taxid:3702)]

 Score = 1148 (409.2 bits), Expect = 1.6e-116, P = 1.6e-116
 Identities = 254/439 (57%), Positives = 294/439 (66%)

Query:     1 MMKFESGYTVETVFDGSKLGIEPYSVEVLPGGELLILDSAXXXXXXXXXXXXXXXXPKLV 60
             M+KFE+GY+VETV DGSKLGIEPYS++VL  GELLILDS                 P+LV
Sbjct:   125 MVKFENGYSVETVLDGSKLGIEPYSIQVLSNGELLILDSQNSNIYQISSSLSLYSRPRLV 184

Query:    61 AGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMAIRKISDSGVTTIAGGKW 120
              GS EGY GHVDG+ R+AR+N+PKGLTVDDRGNIY+ADT+N AIRKIS++GVTTIAGGK 
Sbjct:   185 TGSPEGYPGHVDGRLRDARLNNPKGLTVDDRGNIYVADTVNNAIRKISEAGVTTIAGGKM 244

Query:   121 GRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQYGSSFP 180
              RGGGHVDGPSEDAKFSNDFDVVY+GSSCSLLVIDRGN+AIREIQLHFDDCA QYGS FP
Sbjct:   245 VRGGGHVDGPSEDAKFSNDFDVVYLGSSCSLLVIDRGNQAIREIQLHFDDCADQYGSGFP 304

Query:   181 LGIAVLLAAGFFGYMLALLQRRVGTIVSSQNDHGTVNTSNSASPYQKPLKSVRPPLIPTX 240
             LGIAVL+AA FFGYMLALLQRR+ +IVS   D         A P Q P+K VRPPLI T 
Sbjct:   305 LGIAVLVAAVFFGYMLALLQRRLSSIVSYHTDQEVFE----AVPDQDPIKPVRPPLILTG 360

Query:   241 XXXXXXXXXXXXXSLAKLFANTESSVLEILRGIFPHLRKK-TLSNQYPSLQ-KHS----T 294
                          +L    +N     +E+  G+FP LRKK T+   +   + KHS    T
Sbjct:   361 DEQEKQEESFLG-TLQIFISNAWVFSVELFSGMFPGLRKKQTVGLNFNHQETKHSAFSTT 419

Query:   295 SWPAQESFVIPHEDEPPSIDTRTPTPRKTYAFMSKDA-EKIHQLRQSRAFYSGWDGDFXX 353
             SWP QESFVI ++DEPP +++R  TP K Y FMSKDA EK+ QLRQSRA Y   D +F  
Sbjct:   420 SWPIQESFVIHNKDEPPPVESRNATPGKIYPFMSKDATEKMQQLRQSRALYRSLDAEFLQ 479

Query:   354 XXXXXXX-----RYQSSTPNTYYEQSSEKTNEIVFGAIQEQGAKREAVVIKPVNYGDPIY 408
                         R+ S+ P T YEQSSEKTNEIVFG  QEQ               D + 
Sbjct:   480 EQQQEKHQQYHHRHHSTIPYTLYEQSSEKTNEIVFGPGQEQ---------------DQMN 524

Query:   409 DHQNIRPRAN-FTGYSHGY 426
              HQNI  RA+ F  Y +GY
Sbjct:   525 THQNIHHRAHQFVSYPYGY 543

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2147780 AT5G14890 [Arabidopsis thaliana (taxid:3702)]

 Score = 888 (317.7 bits), Expect = 5.9e-89, P = 5.9e-89
 Identities = 209/434 (48%), Positives = 271/434 (62%)

Query:     1 MMKFESGYTVETVFDGSKLGIEPYSVEVLP-GGELLILDSAXXXXXXXXXXXXXXXXPKL 59
             M+K+ESGY +ETVFDGSKLGIEPY++EV P GGEL++LDS                 PKL
Sbjct:    71 MVKYESGYNMETVFDGSKLGIEPYAIEVSPNGGELIVLDSENSNIHKISMPLSRYGKPKL 130

Query:    60 VAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMAIRKISDSGVTTIA-GG 118
             ++GS EGY+GHVDGK +EARMN P+GL +DDRGNIY+ADT+NMAIRKISD GV+TIA GG
Sbjct:   131 LSGSQEGYTGHVDGKLKEARMNRPRGLAMDDRGNIYVADTINMAIRKISDDGVSTIAAGG 190

Query:   119 KWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQYGS- 177
             +W   GG  +   E  +FS+DFD++Y+ SSCSLLVIDRGN+ I+EIQLH  DC+      
Sbjct:   191 RWS--GGSKE---ESMRFSDDFDLIYVSSSCSLLVIDRGNQLIKEIQLHDHDCSQPEPDT 245

Query:   178 -SFPLGIAVLLAAGFFGYMLALLQRRVGTIVSSQNDHGT-----VNT-SNSASPYQKPLK 230
              S  LG A+L+AA FFGYMLALL RRV ++ SS + H T     V T S + +PYQ+  +
Sbjct:   246 DSLHLGTALLVAAVFFGYMLALLVRRVRSLFSSSS-HDTKSKRHVATPSMTMAPYQRYPR 304

Query:   231 SVRPPLIPTXXXXXXXXXXXXXXSLAKLFANTESSVLEILRGIFPHLRKKTLSNQYPSLQ 290
              VR PLIP               SL KL   T SSV E++ G    +      +QY   Q
Sbjct:   305 PVRQPLIPPQHESEKEEGFLG--SLGKLVVKTGSSVSEMMSGSRNVIPPNF--HQYHH-Q 359

Query:   291 KHSTSWPAQESFVIPHEDEPPSIDTRTPT-PRKTYAFMSKDAEKIHQLRQSRAFYSGWDG 349
             +    WP QESF IP ED PP+++ R+ T P K Y        +     Q+R++Y  +D 
Sbjct:   360 QEPNQWPVQESFAIPEEDGPPALEPRSGTNPDKPYL-------RAQGTNQNRSYYQDYD- 411

Query:   350 DFXXXXXXXXXRYQSSTPNTYYEQSSEKTNEIVFGAIQEQGAKREAVVIKPVNYGDPIYD 409
                        R  + T +  +E + EK NEIVFGA+QEQ  +REA+VIK V++ + I D
Sbjct:   412 ----QYQNQQKRNVNDTAS--FEDNREK-NEIVFGAVQEQDGRREAMVIKAVDFNEAIND 464

Query:   410 HQNIRPRANFTGYS 423
              +N+RPR N+ GYS
Sbjct:   465 QRNLRPRINYMGYS 478

GO:0005576 "extracellular region" evidence=ISM

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2099357 AT3G14860 "AT3G14860" [Arabidopsis thaliana (taxid:3702)]

 Score = 575 (207.5 bits), Expect = 8.6e-56, P = 8.6e-56
 Identities = 155/431 (35%), Positives = 220/431 (51%)

Query:     1 MMKFESGYTVETVFDGSKLGIEPYSVEVLPGGELLILDSAXXXXXXXXXXXXXXXXPKLV 60
             +++FE+GY VETV +G+ +G+ PY + V   GEL  +D                   +LV
Sbjct:    70 VLQFENGYLVETVVEGNDIGVVPYKIRVSDDGELYAVDELNSNIMKITPPLSQYSRGRLV 129

Query:    61 AGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMAIRKISDSGVTTIAGGKW 120
             AGS +G +GH DGKP EAR NHP+G+T+DD+GN+Y+ADT+N+AIRKI DSGVTTIAGGK 
Sbjct:   130 AGSFQGKTGHADGKPSEARFNHPRGVTMDDKGNVYVADTLNLAIRKIGDSGVTTIAGGK- 188

Query:   121 GRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQYGSSFP 180
                 G+ DGPSEDAKFSNDFDVVY+  +CSLLVIDRGN A+R+I L  +DC YQ  SS  
Sbjct:   189 SNIAGYRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLSEEDCDYQDDSSIS 248

Query:   181 L-GIAVLLAAGFFGYMLALLQRRVGTIVSSQNDHGTVNTSNSASPYQKPL-KSVRPPLIP 238
             L  I +++ A   GY   +LQ+  G    S+   G+  +     P ++ L + V    I 
Sbjct:   249 LTDILLVIGAVLIGYATCMLQQGFGNSFFSKTQVGSETSYEEEHPGKEKLSRPVHEKTI- 307

Query:   239 TXXXXXXXXXXXXXXSLAKLFANTESSVLEILR-GIFPHLR--KKTL-----SNQYPSLQ 290
             T               L KL     +S L   R    P+LR  K  L       + P +Q
Sbjct:   308 TKEEPGWPSFGQLLTDLCKLALEFITSHLVPARFQTNPNLRPLKDRLIMPEDEQEPPRVQ 367

Query:   291 KHSTSWPAQESFVIPHEDEPPSIDT--RTPTPRKTYAFMSKD----AEKIHQLRQSRAFY 344
             +H+   P  ES    H   P + D+     TP+   + + KD    + K H+    R  Y
Sbjct:   368 RHTAPAPISES---RHAHLPKADDSYPEHKTPKLRSSSVMKDPTLSSSKHHRTSSKRQDY 424

Query:   345 SGWDGDFXXXXXXXXXRYQSSTPNTYYEQSSEKTNEIVFGAIQEQGAKREAVVIKPVNYG 404
             +     F           + + P  + E+S  +  +      + +     +  +KPV Y 
Sbjct:   425 A----QFYASG-------EVAQPKIHKERSRRRHRD---KTTETEPKPTPSDTVKPVEYS 470

Query:   405 DPI-YDHQNIR 414
             +   +DH N+R
Sbjct:   471 NSSKFDHYNMR 481

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

TAIR|locus:2199872 AT1G23890 "AT1G23890" [Arabidopsis thaliana (taxid:3702)]

 Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
 Identities = 78/169 (46%), Positives = 102/169 (60%)

Query:     5 ESGYTVETVFDGSKLGIEPYSVEVLPGGE-LLILDSAXXXXXXXXXXXXXXXXPKLVAGS 63
             E GY V TV DG K G+ PY++  LPG   L++LDS+                    AG 
Sbjct:    26 EEGYEVTTVVDGHKSGLNPYTIHALPGSSNLIVLDSSGSTFYTTSFPLSVDSVINRFAG- 84

Query:    64 AEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMAIRKISDSG-VTTIAGGKWGR 122
              +G SGHVDGK   +R + P+G  VD +GN+Y+AD  N AIRKIS SG VTTIAGG   +
Sbjct:    85 -DGSSGHVDGKAGNSRFSKPRGFAVDAKGNVYVADKSNKAIRKISSSGSVTTIAGGI-SK 142

Query:   123 GGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDC 171
               GH DGP+++A FS+DF++ ++   C LLV D GN  IR+I L  +DC
Sbjct:   143 AFGHRDGPAQNATFSSDFEITFVPQRCCLLVSDHGNEMIRQINLKEEDC 191


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.134   0.398    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      426       387   0.00093  117 3  11 22  0.43    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  609 (65 KB)
  Total size of DFA:  237 KB (2128 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  30.44u 0.11s 30.55t   Elapsed:  00:00:01
  Total cpu time:  30.44u 0.11s 30.55t   Elapsed:  00:00:01
  Start:  Tue May 21 08:32:20 2013   End:  Tue May 21 08:32:21 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	426
PLN02919	1057	PLN02919, PLN02919, haloacid dehalogenase-like hyd	5e-07
pfam01436	28	pfam01436, NHL, NHL repeat	1e-04
PLN02919	1057	PLN02919, PLN02919, haloacid dehalogenase-like hyd	0.003

>gnl|CDD|215497 PLN02919, PLN02919, haloacid dehalogenase-like hydrolase family protein

 Score = 51.8 bits (124), Expect = 5e-07
 Identities = 47/148 (31%), Positives = 71/148 (47%), Gaps = 19/148 (12%)

Query: 33  ELLILDSANSNLYRISSSLSLYSR-PKLVAGSAEGYS------GHVDGKPREARMNHPKG 85
           EL I DS +S++     +L L +   +L+AG    +S      G  DG   E  + HP G
Sbjct: 753 ELYIADSESSSI----RALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLG 808

Query: 86  LTVDDRGNIYIADTMNMAIRKI--SDSGVTTIAG-GKWGRGGGHVDGPSEDAKFSNDFDV 142
           +     G IY+AD+ N  I+K+  +   VTT+AG GK     G  DG +  A+ S    +
Sbjct: 809 VLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGK----AGFKDGKALKAQLSEPAGL 864

Query: 143 VYIGSSCSLLVIDRGNRAIREIQLHFDD 170
             +G +  L V D  N  IR + L+  +
Sbjct: 865 A-LGENGRLFVADTNNSLIRYLDLNKGE 891

Length = 1057

>gnl|CDD|110440 pfam01436, NHL, NHL repeat

 Score = 38.5 bits (91), Expect = 1e-04
 Identities = 10/27 (37%), Positives = 17/27 (62%)

Query: 81  NHPKGLTVDDRGNIYIADTMNMAIRKI 107
           N P G+ VD  G++Y+AD+ N  ++  
Sbjct: 2   NRPHGVAVDSDGDVYVADSENHRVQVF 28

The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies. It is about 40 residues long and resembles the WD repeat pfam00400. The repeats have a catalytic activity in bovine PAM (peptidyl-glycine alpha-amidating monooxygenase), proteolysis has shown that the Peptidyl-alpha-hydroxyglycine alpha-amidating lyase (PAL) activity is localised to the repeats. Human E3 ubiquitin-protein ligase TRIM32 interacts with the activation domain of Tat. This interaction is me diated by the NHL repeats. Length = 28

>gnl|CDD|215497 PLN02919, PLN02919, haloacid dehalogenase-like hydrolase family protein

 Score = 39.8 bits (93), Expect = 0.003
 Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 5/74 (6%)

Query: 32  GELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDR 91
           G++ + DS N  + ++  +     R   +AG+  G +G  DGK  +A+++ P GL + + 
Sbjct: 815 GQIYVADSYNHKIKKLDPATK---RVTTLAGT--GKAGFKDGKALKAQLSEPAGLALGEN 869

Query: 92  GNIYIADTMNMAIR 105
           G +++ADT N  IR
Sbjct: 870 GRLFVADTNNSLIR 883

Length = 1057

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	426
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.71
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.67
KOG4659	1899	consensus Uncharacterized conserved protein (Rhs f	99.39
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.37
KOG4659	1899	consensus Uncharacterized conserved protein (Rhs f	99.25
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.21
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	98.82
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	98.82
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	98.64
COG3391	381	Uncharacterized conserved protein [Function unknow	98.53
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	98.52
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	98.51
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	98.4
COG3391	381	Uncharacterized conserved protein [Function unknow	98.34
KOG1520	376	consensus Predicted alkaloid synthase/Surface muci	98.3
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	98.29
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	98.27
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.25
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	98.22
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.16
PRK11028	330	6-phosphogluconolactonase; Provisional	98.12
PRK11028	330	6-phosphogluconolactonase; Provisional	97.96
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	97.88
KOG1214	1289	consensus Nidogen and related basement membrane pr	97.81
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	97.77
KOG1214	1289	consensus Nidogen and related basement membrane pr	97.73
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	97.54
KOG1520	376	consensus Predicted alkaloid synthase/Surface muci	97.52
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	97.42
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.28
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	97.19
PF05787	524	DUF839: Bacterial protein of unknown function (DUF	97.01
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	96.97
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	96.82
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	96.81
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	96.76
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	96.65
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.65
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	96.47
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.31
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	96.28
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	96.2
PF13449	326	Phytase-like: Esterase-like activity of phytase	95.98
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	95.69
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	95.35
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	95.15
KOG0266	456	consensus WD40 repeat-containing protein [General	95.04
PF00058	42	Ldl_recept_b: Low-density lipoprotein receptor rep	94.96
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	94.88
COG2133	399	Glucose/sorbosone dehydrogenases [Carbohydrate tra	94.78
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	94.69
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	94.35
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	94.29
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	93.98
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	93.36
PF13449	326	Phytase-like: Esterase-like activity of phytase	93.32
COG3211	616	PhoX Predicted phosphatase [General function predi	93.31
PRK02888	635	nitrous-oxide reductase; Validated	93.14
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	93.13
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	93.11
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	92.98
KOG0266	456	consensus WD40 repeat-containing protein [General	92.75
smart00135	43	LY Low-density lipoprotein-receptor YWTD domain. T	92.73
PF05787	524	DUF839: Bacterial protein of unknown function (DUF	92.72
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	92.52
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	92.49
KOG1215	877	consensus Low-density lipoprotein receptors contai	92.27
smart00135	43	LY Low-density lipoprotein-receptor YWTD domain. T	91.54
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	91.23
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	90.93
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	90.7
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	89.99
PF00058	42	Ldl_recept_b: Low-density lipoprotein receptor rep	89.63
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	89.47
PRK02888	635	nitrous-oxide reductase; Validated	88.92
PTZ00421	493	coronin; Provisional	88.87
KOG0286	343	consensus G-protein beta subunit [General function	88.28
KOG0289	506	consensus mRNA splicing factor [General function p	88.04
PF06739	38	SBBP: Beta-propeller repeat; InterPro: IPR010620 T	87.9
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	87.9
COG3211	616	PhoX Predicted phosphatase [General function predi	87.46
KOG3567	501	consensus Peptidylglycine alpha-amidating monooxyg	86.24
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	85.69
COG2133	399	Glucose/sorbosone dehydrogenases [Carbohydrate tra	85.28
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	85.11
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	84.38
KOG1215	877	consensus Low-density lipoprotein receptors contai	84.09
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	83.73
KOG0318	603	consensus WD40 repeat stress protein/actin interac	83.61
PF06739	38	SBBP: Beta-propeller repeat; InterPro: IPR010620 T	83.33
PF14517	229	Tachylectin: Tachylectin; PDB: 1TL2_A.	82.41
KOG1274	933	consensus WD40 repeat protein [General function pr	82.34
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	82.2
KOG0263	707	consensus Transcription initiation factor TFIID, s	82.05
KOG0315	311	consensus G-protein beta subunit-like protein (con	81.36
PTZ00420	568	coronin; Provisional	80.82
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	80.14
KOG0263	707	consensus Transcription initiation factor TFIID, s	80.08

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.71  E-value=3.3e-16  Score=178.98  Aligned_cols=145  Identities=30%  Similarity=0.454  Sum_probs=117.2

Q ss_pred             CCCceEEEEcCCCc-EEEEECCCCeEEEEeCCCCcccccEEEecCC------CCcccccCCcccccccCCcceEEEcCCC
Q 014345           20 GIEPYSVEVLPGGE-LLILDSANSNLYRISSSLSLYSRPKLVAGSA------EGYSGHVDGKPREARMNHPKGLTVDDRG   92 (426)
Q Consensus        20 ~~~P~GIaVd~dG~-LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~------~G~~G~~dG~a~~A~Ln~P~GIaVd~dG   92 (426)
                      +..|+||+++++|. |||+|..+++|++++.++   +...+++|..      ....|..+|....+.|++|.||+++++|
T Consensus       739 ~~~P~GIavspdG~~LYVADs~n~~Irv~D~~t---g~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG  815 (1057)
T PLN02919        739 FAQPSGISLSPDLKELYIADSESSSIRALDLKT---GGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDG  815 (1057)
T ss_pred             ccCccEEEEeCCCCEEEEEECCCCeEEEEECCC---CcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCC
Confidence            35899999999987 999999999999999874   3345555421      1123444566667889999999999999


Q ss_pred             CEEEEECCCCEEEEEc-CC-CcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCc
Q 014345           93 NIYIADTMNMAIRKIS-DS-GVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDD  170 (426)
Q Consensus        93 ~LYVADt~N~rIrk~d-~g-~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~  170 (426)
                      +|||||+.|++|++++ ++ .+.+++|..  . .|..+|....+.|+.|.+|+ ++++|+|||+|++|++|++|++....
T Consensus       816 ~LYVADs~N~rIrviD~~tg~v~tiaG~G--~-~G~~dG~~~~a~l~~P~GIa-vd~dG~lyVaDt~Nn~Irvid~~~~~  891 (1057)
T PLN02919        816 QIYVADSYNHKIKKLDPATKRVTTLAGTG--K-AGFKDGKALKAQLSEPAGLA-LGENGRLFVADTNNSLIRYLDLNKGE  891 (1057)
T ss_pred             cEEEEECCCCEEEEEECCCCeEEEEeccC--C-cCCCCCcccccccCCceEEE-EeCCCCEEEEECCCCEEEEEECCCCc
Confidence            9999999999999999 44 478888732  1 35567777889999999999 68899999999999999999998754


Q ss_pred             e
Q 014345          171 C  171 (426)
Q Consensus       171 ~  171 (426)
                      .
T Consensus       892 ~  892 (1057)
T PLN02919        892 A  892 (1057)
T ss_pred             c
Confidence            3

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.67  E-value=2.2e-15  Score=172.20  Aligned_cols=162  Identities=24%  Similarity=0.319  Sum_probs=120.2

Q ss_pred             CCceEEEEcC-CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCC-EEEEE
Q 014345           21 IEPYSVEVLP-GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIAD   98 (426)
Q Consensus        21 ~~P~GIaVd~-dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~-LYVAD   98 (426)
                      ..|.+|++|+ +|+|||+|+.+|||++++.+|    .....+|.. |..|..+|.+..++|+.|.||++|++|+ |||||
T Consensus       568 ~~P~gvavd~~~g~lyVaDs~n~rI~v~d~~G----~~i~~ig~~-g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaD  642 (1057)
T PLN02919        568 KFPGKLAIDLLNNRLFISDSNHNRIVVTDLDG----NFIVQIGST-GEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVAD  642 (1057)
T ss_pred             CCCceEEEECCCCeEEEEECCCCeEEEEeCCC----CEEEEEccC-CCcCCCCCchhccccCCCcEEEEeCCCCEEEEEe
Confidence            4799999997 578999999999999999985    444455542 5566678888889999999999998765 99999


Q ss_pred             CCCCEEEEEc--CCCcEEEeCCccCCCCCCCCC-CcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceEeec
Q 014345           99 TMNMAIRKIS--DSGVTTIAGGKWGRGGGHVDG-PSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQY  175 (426)
Q Consensus        99 t~N~rIrk~d--~g~VstIaGg~~g~~~G~~dG-~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~~~~~  175 (426)
                      +.|++|++++  .+.+++++|... .+....+| ......|+.|++|++.+.++.|||+|.++++|++++.....+....
T Consensus       643 t~n~~Ir~id~~~~~V~tlag~G~-~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~  721 (1057)
T PLN02919        643 TENHALREIDFVNETVRTLAGNGT-KGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFS  721 (1057)
T ss_pred             CCCceEEEEecCCCEEEEEeccCc-ccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEe
Confidence            9999999999  444788887421 10111222 1223458999999954348899999999999999998654432211


Q ss_pred             ----------------CCCCcceEEEEec
Q 014345          176 ----------------GSSFPLGIAVLLA  188 (426)
Q Consensus       176 ----------------~~g~P~GIAv~~g  188 (426)
                                      ....|.|||+...
T Consensus       722 G~G~~~~~~g~~~~~~~~~~P~GIavspd  750 (1057)
T PLN02919        722 GDGYERNLNGSSGTSTSFAQPSGISLSPD  750 (1057)
T ss_pred             cCCccccCCCCccccccccCccEEEEeCC
Confidence                            1245888888754

>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]

Probab=99.39  E-value=6.4e-12  Score=140.37  Aligned_cols=165  Identities=24%  Similarity=0.315  Sum_probs=115.8

Q ss_pred             cCCcEEEEEecCCCCCCCceEEEEcC-CCcEEEEECCCCeEEEEeCC--CCcccccEEEecCCC------CcccccCCcc
Q 014345            5 ESGYTVETVFDGSKLGIEPYSVEVLP-GGELLILDSANSNLYRISSS--LSLYSRPKLVAGSAE------GYSGHVDGKP   75 (426)
Q Consensus         5 ~~G~tv~tv~~g~~l~~~P~GIaVd~-dG~LYVaD~~n~rI~kid~d--g~~~g~v~~vaG~~~------G~~G~~dG~a   75 (426)
                      .+|...+.+--+..-..+-+-||++| ||.|||+|...++|+|+..-  ...-.+..++||.+.      ..||+ .+.|
T Consensus       391 ~dg~v~tIl~L~~t~~sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~desCGD-GalA  469 (1899)
T KOG4659|consen  391 QDGQVSTILTLGLTDTSHSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEPQDSRNNYEVVAGDGEVCLPADESCGD-GALA  469 (1899)
T ss_pred             CCCceEEEEEecCCCccceeEEEecCcCceEEecCCCcceEEEeccCCccccccCeeEEeccCcCccccccccCc-chhc
Confidence            45544444444445556778999999 99999999999999999442  112356789999762      24664 5568


Q ss_pred             cccccCCcceEEEcCCCCEEEEECCCCEEEEEc-CCCcEEEeCCccCC-CC-CCCC-CCcccccCCCCCeeEEECCCCeE
Q 014345           76 REARMNHPKGLTVDDRGNIYIADTMNMAIRKIS-DSGVTTIAGGKWGR-GG-GHVD-GPSEDAKFSNDFDVVYIGSSCSL  151 (426)
Q Consensus        76 ~~A~Ln~P~GIaVd~dG~LYVADt~N~rIrk~d-~g~VstIaGg~~g~-~~-G~~d-G~~~~a~f~~P~gIa~vd~~G~L  151 (426)
                      .+|+|..|+||+||++|+||+||.  -+||++| +|.++|+.|...-. .. .+.. -...+.+|.+|++||+.+=++.|
T Consensus       470 ~dA~L~~PkGIa~dk~g~lYfaD~--t~IR~iD~~giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl  547 (1899)
T KOG4659|consen  470 QDAQLIFPKGIAFDKMGNLYFADG--TRIRVIDTTGIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSL  547 (1899)
T ss_pred             ccceeccCCceeEccCCcEEEecc--cEEEEeccCceEEEeccCCCCccCccccccccchhheeeecccceeecCCCCeE
Confidence            899999999999999999999997  5799999 66689998843211 11 1111 13556789999999954448899


Q ss_pred             EEEEC-------CCCeEEEEEcCCCceE
Q 014345          152 LVIDR-------GNRAIREIQLHFDDCA  172 (426)
Q Consensus       152 YVaDs-------gN~rIr~I~l~~~~~~  172 (426)
                      ||.|.       -+++|+.|.-..-+|.
T Consensus       548 ~Vld~nvvlrit~~~rV~Ii~GrP~hC~  575 (1899)
T KOG4659|consen  548 LVLDTNVVLRITVVHRVRIILGRPTHCD  575 (1899)
T ss_pred             EEeecceEEEEccCccEEEEcCCccccc
Confidence            99994       2455554443334553

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.37  E-value=3.8e-11  Score=114.79  Aligned_cols=143  Identities=23%  Similarity=0.278  Sum_probs=99.8

Q ss_pred             EEEEEecC---CCCCCCceEEEEcCCCcEEEEECCC--------CeEEEEeCCCCcccccEEEecCCCCcccccCCcccc
Q 014345            9 TVETVFDG---SKLGIEPYSVEVLPGGELLILDSAN--------SNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPRE   77 (426)
Q Consensus         9 tv~tv~~g---~~l~~~P~GIaVd~dG~LYVaD~~n--------~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~   77 (426)
                      .++.+...   ..-...|++++++++|+|||+|...        ++|++++.+    +.+..++.               
T Consensus        71 ~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~----~~~~~~~~---------------  131 (246)
T PF08450_consen   71 KVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD----GKVTVVAD---------------  131 (246)
T ss_dssp             EEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT----SEEEEEEE---------------
T ss_pred             cEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC----CeEEEEec---------------
Confidence            44555543   2134589999999999999999755        579999987    34444432               


Q ss_pred             cccCCcceEEEcCCCC-EEEEECCCCEEEEEc-C--CC-c---EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCC
Q 014345           78 ARMNHPKGLTVDDRGN-IYIADTMNMAIRKIS-D--SG-V---TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSC  149 (426)
Q Consensus        78 A~Ln~P~GIaVd~dG~-LYVADt~N~rIrk~d-~--g~-V---stIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G  149 (426)
                       .|..|+||+++++|+ |||+|+.+++|++++ +  +. +   .+++....              ....|-+++ +|.+|
T Consensus       132 -~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~--------------~~g~pDG~~-vD~~G  195 (246)
T PF08450_consen  132 -GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPG--------------GPGYPDGLA-VDSDG  195 (246)
T ss_dssp             -EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SS--------------SSCEEEEEE-EBTTS
T ss_pred             -CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCC--------------CCcCCCcce-EcCCC
Confidence             277899999999986 999999999999999 3  33 2   12221100              013588998 79999


Q ss_pred             eEEEEECCCCeEEEEEcCCCceEe-ecCCCCcceEEEE
Q 014345          150 SLLVIDRGNRAIREIQLHFDDCAY-QYGSSFPLGIAVL  186 (426)
Q Consensus       150 ~LYVaDsgN~rIr~I~l~~~~~~~-~~~~g~P~GIAv~  186 (426)
                      +|||++.++++|.++++++..... ......|+.+|+.
T Consensus       196 ~l~va~~~~~~I~~~~p~G~~~~~i~~p~~~~t~~~fg  233 (246)
T PF08450_consen  196 NLWVADWGGGRIVVFDPDGKLLREIELPVPRPTNCAFG  233 (246)
T ss_dssp             -EEEEEETTTEEEEEETTSCEEEEEE-SSSSEEEEEEE
T ss_pred             CEEEEEcCCCEEEEECCCccEEEEEcCCCCCEEEEEEE
Confidence            999999999999999999754432 2233467777774

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]

Probab=99.25  E-value=2e-11  Score=136.56  Aligned_cols=140  Identities=22%  Similarity=0.389  Sum_probs=113.2

Q ss_pred             CCceEEEEcC-CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcc-----cccCCcccccccCCcceEEEcCCCCE
Q 014345           21 IEPYSVEVLP-GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYS-----GHVDGKPREARMNHPKGLTVDDRGNI   94 (426)
Q Consensus        21 ~~P~GIaVd~-dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~-----G~~dG~a~~A~Ln~P~GIaVd~dG~L   94 (426)
                      ..|+.+||+| ||.|||.|  +|-|++++.+    +++..++|++..|.     .+....+..+.|-.|..|+|..+|.|
T Consensus       533 eWPT~LaV~Pmdnsl~Vld--~nvvlrit~~----~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~~G~l  606 (1899)
T KOG4659|consen  533 EWPTSLAVDPMDNSLLVLD--TNVVLRITVV----HRVRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGTDGAL  606 (1899)
T ss_pred             ecccceeecCCCCeEEEee--cceEEEEccC----ccEEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeecCCceE
Confidence            4899999999 99999999  8899999998    67889999873321     11122356777888999999999999


Q ss_pred             EEEECCC---CEEEEEc-CCCcEEEeCCccCCCC---------CCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeE
Q 014345           95 YIADTMN---MAIRKIS-DSGVTTIAGGKWGRGG---------GHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAI  161 (426)
Q Consensus        95 YVADt~N---~rIrk~d-~g~VstIaGg~~g~~~---------G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rI  161 (426)
                      |||++..   +|||++. +|++..+||.+...+|         ...++.+.+|+|+.|..|| |.++|.|||||.+|-||
T Consensus       607 yvaEsD~rriNrvr~~~tdg~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~ala-VsPdg~v~IAD~gN~rI  685 (1899)
T KOG4659|consen  607 YVAESDGRRINRVRKLSTDGTISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALA-VSPDGDVIIADSGNSRI  685 (1899)
T ss_pred             EEEeccchhhhheEEeccCceEEEecCCCCCCCcccccCCccccccchhhhccccCCcceEE-ECCCCcEEEecCCchhh
Confidence            9999874   5778888 7779999997553221         1224578899999999999 89999999999999999


Q ss_pred             EEEEcC
Q 014345          162 REIQLH  167 (426)
Q Consensus       162 r~I~l~  167 (426)
                      +++...
T Consensus       686 r~Vs~~  691 (1899)
T KOG4659|consen  686 RKVSAR  691 (1899)
T ss_pred             hhhhhc
Confidence            988754

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.21  E-value=3.8e-10  Score=107.94  Aligned_cols=152  Identities=22%  Similarity=0.335  Sum_probs=99.9

Q ss_pred             ceEEEEc-CCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCC
Q 014345           23 PYSVEVL-PGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN  101 (426)
Q Consensus        23 P~GIaVd-~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N  101 (426)
                      |.|++++ ++|.|||++...  +.+++.+.   +.+..++....          ....++.|+++++|++|+|||+|...
T Consensus        42 ~~G~~~~~~~g~l~v~~~~~--~~~~d~~~---g~~~~~~~~~~----------~~~~~~~~ND~~vd~~G~ly~t~~~~  106 (246)
T PF08450_consen   42 PNGMAFDRPDGRLYVADSGG--IAVVDPDT---GKVTVLADLPD----------GGVPFNRPNDVAVDPDGNLYVTDSGG  106 (246)
T ss_dssp             EEEEEEECTTSEEEEEETTC--EEEEETTT---TEEEEEEEEET----------TCSCTEEEEEEEE-TTS-EEEEEECC
T ss_pred             CceEEEEccCCEEEEEEcCc--eEEEecCC---CcEEEEeeccC----------CCcccCCCceEEEcCCCCEEEEecCC
Confidence            9999998 688899998544  44447664   45555553310          01247889999999999999999864


Q ss_pred             --------CEEEEEc-CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCce-
Q 014345          102 --------MAIRKIS-DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDC-  171 (426)
Q Consensus       102 --------~rIrk~d-~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~-  171 (426)
                              .+|.+++ ++.+..+..                 .+..|++|++..+...|||+|+.+++|++++++.... 
T Consensus       107 ~~~~~~~~g~v~~~~~~~~~~~~~~-----------------~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~  169 (246)
T PF08450_consen  107 GGASGIDPGSVYRIDPDGKVTVVAD-----------------GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGE  169 (246)
T ss_dssp             BCTTCGGSEEEEEEETTSEEEEEEE-----------------EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCC
T ss_pred             CccccccccceEEECCCCeEEEEec-----------------CcccccceEECCcchheeecccccceeEEEeccccccc
Confidence                    5688888 434444432                 3567999996544447999999999999999974332 


Q ss_pred             ----E-e---ecCCCCcceEEEEecCCceEEEEEEEecccceeeecc
Q 014345          172 ----A-Y---QYGSSFPLGIAVLLAAGFFGYMLALLQRRVGTIVSSQ  210 (426)
Q Consensus       172 ----~-~---~~~~g~P~GIAv~~g~g~~Gy~~a~lq~~~g~~~~s~  210 (426)
                          . .   ....+.|.|++++..    |.+|...-..-.+..++.
T Consensus       170 ~~~~~~~~~~~~~~g~pDG~~vD~~----G~l~va~~~~~~I~~~~p  212 (246)
T PF08450_consen  170 LSNRRVFIDFPGGPGYPDGLAVDSD----GNLWVADWGGGRIVVFDP  212 (246)
T ss_dssp             EEEEEEEEE-SSSSCEEEEEEEBTT----S-EEEEEETTTEEEEEET
T ss_pred             eeeeeeEEEcCCCCcCCCcceEcCC----CCEEEEEcCCCEEEEECC
Confidence                1 1   122246999999953    556655444444444443

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=98.82  E-value=1.8e-07  Score=94.20  Aligned_cols=138  Identities=20%  Similarity=0.209  Sum_probs=91.0

Q ss_pred             CCCceEEEEcCCCcEEEEECC-----------CCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEE
Q 014345           20 GIEPYSVEVLPGGELLILDSA-----------NSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTV   88 (426)
Q Consensus        20 ~~~P~GIaVd~dG~LYVaD~~-----------n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaV   88 (426)
                      .+.|+.+.++++|.+||.|..           .++|+++++.+   +..+.+.+.                |..|+|||+
T Consensus       110 ~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g---~~~~l~~~~----------------~~~~NGla~  170 (307)
T COG3386         110 LNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDG---GVVRLLDDD----------------LTIPNGLAF  170 (307)
T ss_pred             cCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCC---CEEEeecCc----------------EEecCceEE
Confidence            368999999999999999977           24688888764   233444322                667999999


Q ss_pred             cCCC-CEEEEECCCCEEEEEc-CCCcEEEeCCccC-CCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCC-CeEEEE
Q 014345           89 DDRG-NIYIADTMNMAIRKIS-DSGVTTIAGGKWG-RGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGN-RAIREI  164 (426)
Q Consensus        89 d~dG-~LYVADt~N~rIrk~d-~g~VstIaGg~~g-~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN-~rIr~I  164 (426)
                      ++|| .+|++|+..++|.+++ +.. ....++... .......        -.|-+++ +|.+|+||++-..+ .+|.++
T Consensus       171 SpDg~tly~aDT~~~~i~r~~~d~~-~g~~~~~~~~~~~~~~~--------G~PDG~~-vDadG~lw~~a~~~g~~v~~~  240 (307)
T COG3386         171 SPDGKTLYVADTPANRIHRYDLDPA-TGPIGGRRGFVDFDEEP--------GLPDGMA-VDADGNLWVAAVWGGGRVVRF  240 (307)
T ss_pred             CCCCCEEEEEeCCCCeEEEEecCcc-cCccCCcceEEEccCCC--------CCCCceE-EeCCCCEEEecccCCceEEEE
Confidence            9999 6999999999999998 421 000011000 0000011        2577887 89999999655444 599999


Q ss_pred             EcCCCceEe-ecCCCCcceEEEE
Q 014345          165 QLHFDDCAY-QYGSSFPLGIAVL  186 (426)
Q Consensus       165 ~l~~~~~~~-~~~~g~P~GIAv~  186 (426)
                      ++++..... ......|...|+.
T Consensus       241 ~pdG~l~~~i~lP~~~~t~~~Fg  263 (307)
T COG3386         241 NPDGKLLGEIKLPVKRPTNPAFG  263 (307)
T ss_pred             CCCCcEEEEEECCCCCCccceEe
Confidence            998644332 2222445555554

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=98.82  E-value=2.9e-07  Score=94.24  Aligned_cols=152  Identities=16%  Similarity=0.182  Sum_probs=98.3

Q ss_pred             CcEEEEEecCCCCCCCceEEEEcCCCcEEEEECCC------------CeEEEEeCC-CC-cccccEEEecCCCCcccccC
Q 014345            7 GYTVETVFDGSKLGIEPYSVEVLPGGELLILDSAN------------SNLYRISSS-LS-LYSRPKLVAGSAEGYSGHVD   72 (426)
Q Consensus         7 G~tv~tv~~g~~l~~~P~GIaVd~dG~LYVaD~~n------------~rI~kid~d-g~-~~g~v~~vaG~~~G~~G~~d   72 (426)
                      |+.++.++....+. .|.+|++|++|+|||++..+            .||++++.. +. ...+.++++..         
T Consensus         1 Gf~~~l~A~~p~~~-~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~---------   70 (367)
T TIGR02604         1 GFKVTLFAAEPLLR-NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEE---------   70 (367)
T ss_pred             CcEEEEEECCCccC-CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecC---------
Confidence            56778777664544 89999999999999998522            388888542 21 11123444422         


Q ss_pred             CcccccccCCcceEEEcCCCCEEEEECCCCEEEEEc--CC------CcEEEeCCccCCCCCCCCCCcccccCCCCCeeEE
Q 014345           73 GKPREARMNHPKGLTVDDRGNIYIADTMNMAIRKIS--DS------GVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVY  144 (426)
Q Consensus        73 G~a~~A~Ln~P~GIaVd~dG~LYVADt~N~rIrk~d--~g------~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~  144 (426)
                             |+.|+||++.++| |||++.  .+|+++.  ++      ...+++.+....     +    ......+++++ 
T Consensus        71 -------l~~p~Gi~~~~~G-lyV~~~--~~i~~~~d~~gdg~ad~~~~~l~~~~~~~-----~----~~~~~~~~~l~-  130 (367)
T TIGR02604        71 -------LSMVTGLAVAVGG-VYVATP--PDILFLRDKDGDDKADGEREVLLSGFGGQ-----I----NNHHHSLNSLA-  130 (367)
T ss_pred             -------CCCccceeEecCC-EEEeCC--CeEEEEeCCCCCCCCCCccEEEEEccCCC-----C----CcccccccCce-
Confidence                   7789999999988 999985  4687773  22      233444321100     0    00123578888 


Q ss_pred             ECCCCeEEEEECCC-------------------CeEEEEEcCCCceEe-ecCCCCcceEEEEec
Q 014345          145 IGSSCSLLVIDRGN-------------------RAIREIQLHFDDCAY-QYGSSFPLGIAVLLA  188 (426)
Q Consensus       145 vd~~G~LYVaDsgN-------------------~rIr~I~l~~~~~~~-~~~~g~P~GIAv~~g  188 (426)
                      ++++|.|||++..+                   +.|.++++++..... ..+.-.|.|++++..
T Consensus       131 ~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~  194 (367)
T TIGR02604       131 WGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSW  194 (367)
T ss_pred             ECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCC
Confidence            68999999988632                   568888887655443 344456788888743

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=98.64  E-value=1.3e-06  Score=88.13  Aligned_cols=151  Identities=17%  Similarity=0.241  Sum_probs=98.3

Q ss_pred             ceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCC-
Q 014345           23 PYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN-  101 (426)
Q Consensus        23 P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N-  101 (426)
                      +.++.++..|.|++++.+-.++ .++..    +.++.++-..           ...+++.|+++.++++|.+||.|..+ 
T Consensus        69 ~~~~~~d~~g~Lv~~~~g~~~~-~~~~~----~~~t~~~~~~-----------~~~~~~r~ND~~v~pdG~~wfgt~~~~  132 (307)
T COG3386          69 SSGALIDAGGRLIACEHGVRLL-DPDTG----GKITLLAEPE-----------DGLPLNRPNDGVVDPDGRIWFGDMGYF  132 (307)
T ss_pred             ccceeecCCCeEEEEccccEEE-eccCC----ceeEEecccc-----------CCCCcCCCCceeEcCCCCEEEeCCCcc
Confidence            7788889888898888654322 22221    1224444321           12357899999999999999999872 


Q ss_pred             ----------CEEEEEc-CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCC-eEEEEECCCCeEEEEEcCC-
Q 014345          102 ----------MAIRKIS-DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSC-SLLVIDRGNRAIREIQLHF-  168 (426)
Q Consensus       102 ----------~rIrk~d-~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G-~LYVaDsgN~rIr~I~l~~-  168 (426)
                                .+|.+++ .+++..+..+                .+..|++||+ ++++ .||++|+..++|++++.+. 
T Consensus       133 ~~~~~~~~~~G~lyr~~p~g~~~~l~~~----------------~~~~~NGla~-SpDg~tly~aDT~~~~i~r~~~d~~  195 (307)
T COG3386         133 DLGKSEERPTGSLYRVDPDGGVVRLLDD----------------DLTIPNGLAF-SPDGKTLYVADTPANRIHRYDLDPA  195 (307)
T ss_pred             ccCccccCCcceEEEEcCCCCEEEeecC----------------cEEecCceEE-CCCCCEEEEEeCCCCeEEEEecCcc
Confidence                      3466666 4554444321                3678999995 5555 9999999999999999872 


Q ss_pred             -----Cc--e-EeecCCCCcceEEEEecCCceEEEEEEEeccc-ceeeecc
Q 014345          169 -----DD--C-AYQYGSSFPLGIAVLLAAGFFGYMLALLQRRV-GTIVSSQ  210 (426)
Q Consensus       169 -----~~--~-~~~~~~g~P~GIAv~~g~g~~Gy~~a~lq~~~-g~~~~s~  210 (426)
                           ..  + ......|.|.|++++..    |+.|+...+.- +...++.
T Consensus       196 ~g~~~~~~~~~~~~~~~G~PDG~~vDad----G~lw~~a~~~g~~v~~~~p  242 (307)
T COG3386         196 TGPIGGRRGFVDFDEEPGLPDGMAVDAD----GNLWVAAVWGGGRVVRFNP  242 (307)
T ss_pred             cCccCCcceEEEccCCCCCCCceEEeCC----CCEEEecccCCceEEEECC
Confidence                 11  1 11234589999999955    66674444432 3344433

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.53  E-value=3.9e-06  Score=86.53  Aligned_cols=139  Identities=22%  Similarity=0.368  Sum_probs=97.3

Q ss_pred             CCCceEEEEcCCC-cEEEEEC--CCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCC-EE
Q 014345           20 GIEPYSVEVLPGG-ELLILDS--ANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IY   95 (426)
Q Consensus        20 ~~~P~GIaVd~dG-~LYVaD~--~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~-LY   95 (426)
                      +..|.+++++++| .+||++.  .+++|.+++..+..... ....|.                  .|.+++++++|+ +|
T Consensus       115 G~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~-~~~vG~------------------~P~~~a~~p~g~~vy  175 (381)
T COG3391         115 GLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA-TIPVGN------------------TPTGVAVDPDGNKVY  175 (381)
T ss_pred             ccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE-EEecCC------------------CcceEEECCCCCeEE
Confidence            4479999999987 6999999  57999999998532111 111111                  489999999998 99


Q ss_pred             EEECCCCEEEEEcCCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCe-EEEEECCC--CeEEEEEcCCCceE
Q 014345           96 IADTMNMAIRKISDSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCS-LLVIDRGN--RAIREIQLHFDDCA  172 (426)
Q Consensus        96 VADt~N~rIrk~d~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~-LYVaDsgN--~rIr~I~l~~~~~~  172 (426)
                      |+|..+++|..++..+...+-+.. .         .....+..|.+++ ++++|. +||++..+  ++|.+++.......
T Consensus       176 v~~~~~~~v~vi~~~~~~v~~~~~-~---------~~~~~~~~P~~i~-v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~  244 (381)
T COG3391         176 VTNSDDNTVSVIDTSGNSVVRGSV-G---------SLVGVGTGPAGIA-VDPDGNRVYVANDGSGSNNVLKIDTATGNVT  244 (381)
T ss_pred             EEecCCCeEEEEeCCCcceecccc-c---------cccccCCCCceEE-ECCCCCEEEEEeccCCCceEEEEeCCCceEE
Confidence            999999999999944432221210 0         0122467899998 677775 99999988  69999998876554


Q ss_pred             ee--cCCC-CcceEEEEec
Q 014345          173 YQ--YGSS-FPLGIAVLLA  188 (426)
Q Consensus       173 ~~--~~~g-~P~GIAv~~g  188 (426)
                      ..  .... .|.++++.-.
T Consensus       245 ~~~~~~~~~~~~~v~~~p~  263 (381)
T COG3391         245 ATDLPVGSGAPRGVAVDPA  263 (381)
T ss_pred             EeccccccCCCCceeECCC
Confidence            32  1112 5777776643

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=98.52  E-value=1.7e-06  Score=85.53  Aligned_cols=134  Identities=19%  Similarity=0.238  Sum_probs=95.5

Q ss_pred             CCCceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEe-cCCCCcccccCCcccccccCCcceEEEcCCCCEEEEE
Q 014345           20 GIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVA-GSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIAD   98 (426)
Q Consensus        20 ~~~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~va-G~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVAD   98 (426)
                      +..|+.|+.++||.+|+++.+.+.|=++|+.+   |++.++. |.+                .+|.||.+++||..||+|
T Consensus        61 G~ap~dvapapdG~VWft~qg~gaiGhLdP~t---Gev~~ypLg~G----------------a~Phgiv~gpdg~~Witd  121 (353)
T COG4257          61 GSAPFDVAPAPDGAVWFTAQGTGAIGHLDPAT---GEVETYPLGSG----------------ASPHGIVVGPDGSAWITD  121 (353)
T ss_pred             CCCccccccCCCCceEEecCccccceecCCCC---CceEEEecCCC----------------CCCceEEECCCCCeeEec
Confidence            34699999999999999999999999999985   6666664 331                269999999999999999


Q ss_pred             CCCCEEEEEc--CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceEee--
Q 014345           99 TMNMAIRKIS--DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQ--  174 (426)
Q Consensus        99 t~N~rIrk~d--~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~~~~--  174 (426)
                      +++ .|++++  ..++++..-..          ...++.|+.    +.+|+.|+||++.. ++.--++++........  
T Consensus       122 ~~~-aI~R~dpkt~evt~f~lp~----------~~a~~nlet----~vfD~~G~lWFt~q-~G~yGrLdPa~~~i~vfpa  185 (353)
T COG4257         122 TGL-AIGRLDPKTLEVTRFPLPL----------EHADANLET----AVFDPWGNLWFTGQ-IGAYGRLDPARNVISVFPA  185 (353)
T ss_pred             Ccc-eeEEecCcccceEEeeccc----------ccCCCcccc----eeeCCCccEEEeec-cccceecCcccCceeeecc
Confidence            988 999999  34465543211          112233433    34699999999987 34444566655444332  


Q ss_pred             cCCCCcceEEEEec
Q 014345          175 YGSSFPLGIAVLLA  188 (426)
Q Consensus       175 ~~~g~P~GIAv~~g  188 (426)
                      ...+.|.|||+...
T Consensus       186 PqG~gpyGi~atpd  199 (353)
T COG4257         186 PQGGGPYGICATPD  199 (353)
T ss_pred             CCCCCCcceEECCC
Confidence            23456999998743

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=98.51  E-value=1.4e-07  Score=62.08  Aligned_cols=28  Identities=43%  Similarity=0.772  Sum_probs=26.5

Q ss_pred             cCCcceEEEcCCCCEEEEECCCCEEEEE
Q 014345           80 MNHPKGLTVDDRGNIYIADTMNMAIRKI  107 (426)
Q Consensus        80 Ln~P~GIaVd~dG~LYVADt~N~rIrk~  107 (426)
                      |+.|.|||++++|+|||||+.|+||+++
T Consensus         1 f~~P~gvav~~~g~i~VaD~~n~rV~vf   28 (28)
T PF01436_consen    1 FNYPHGVAVDSDGNIYVADSGNHRVQVF   28 (28)
T ss_dssp             BSSEEEEEEETTSEEEEEECCCTEEEEE
T ss_pred             CcCCcEEEEeCCCCEEEEECCCCEEEEC
Confidence            6789999999999999999999999986

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=98.40  E-value=7.8e-06  Score=83.75  Aligned_cols=115  Identities=12%  Similarity=0.200  Sum_probs=75.5

Q ss_pred             CceEEEEcCCCcEEEEECCCCeEEEE-eCCCC--cccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEE
Q 014345           22 EPYSVEVLPGGELLILDSANSNLYRI-SSSLS--LYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIAD   98 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n~rI~ki-d~dg~--~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVAD   98 (426)
                      .|+||++.++| |||++  ..+|+++ +.++.  ..++.++++......    +.    .....++++++++||.|||++
T Consensus        73 ~p~Gi~~~~~G-lyV~~--~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~----~~----~~~~~~~~l~~gpDG~LYv~~  141 (367)
T TIGR02604        73 MVTGLAVAVGG-VYVAT--PPDILFLRDKDGDDKADGEREVLLSGFGGQ----IN----NHHHSLNSLAWGPDGWLYFNH  141 (367)
T ss_pred             CccceeEecCC-EEEeC--CCeEEEEeCCCCCCCCCCccEEEEEccCCC----CC----cccccccCceECCCCCEEEec
Confidence            79999999988 99997  4579888 44432  122444554321010    00    013458999999999999998


Q ss_pred             CCC-------------------CEEEEEc-CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECC
Q 014345           99 TMN-------------------MAIRKIS-DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRG  157 (426)
Q Consensus        99 t~N-------------------~rIrk~d-~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsg  157 (426)
                      ..+                   +.|.+++ +++ +..++.                 .|..|++|+ ++++|.||++|.+
T Consensus       142 G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~-----------------G~rnp~Gl~-~d~~G~l~~tdn~  203 (367)
T TIGR02604       142 GNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAH-----------------GFQNPYGHS-VDSWGDVFFCDND  203 (367)
T ss_pred             ccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEec-----------------CcCCCccce-ECCCCCEEEEccC
Confidence            732                   3466666 333 333332                 367899999 6889999999987


Q ss_pred             CCeEEEEE
Q 014345          158 NRAIREIQ  165 (426)
Q Consensus       158 N~rIr~I~  165 (426)
                      ++...++.
T Consensus       204 ~~~~~~i~  211 (367)
T TIGR02604       204 DPPLCRVT  211 (367)
T ss_pred             CCceeEEc
Confidence            66555554

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.34  E-value=1.5e-05  Score=82.27  Aligned_cols=133  Identities=20%  Similarity=0.238  Sum_probs=96.2

Q ss_pred             CCceEEEEcCCCc-EEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCC-CEEEEE
Q 014345           21 IEPYSVEVLPGGE-LLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRG-NIYIAD   98 (426)
Q Consensus        21 ~~P~GIaVd~dG~-LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG-~LYVAD   98 (426)
                      ..|.|+++.++|+ +||++...++|.+|+.+..   +....+..     |           ..|.+++++++| .+||+|
T Consensus        74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~---~~~~~~~v-----G-----------~~P~~~~~~~~~~~vYV~n  134 (381)
T COG3391          74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATN---TVLGSIPV-----G-----------LGPVGLAVDPDGKYVYVAN  134 (381)
T ss_pred             ccccceeeCCCCCeEEEecCCCCeEEEEcCccc---ceeeEeee-----c-----------cCCceEEECCCCCEEEEEe
Confidence            5799999999887 9999999999999996532   11111111     1           159999999987 799999


Q ss_pred             C--CCCEEEEEcCCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCe-EEEEECCCCeEEEEEcCCCceEe--
Q 014345           99 T--MNMAIRKISDSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCS-LLVIDRGNRAIREIQLHFDDCAY--  173 (426)
Q Consensus        99 t--~N~rIrk~d~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~-LYVaDsgN~rIr~I~l~~~~~~~--  173 (426)
                      .  .|+.|.+++..+-..+.-...|.               .|.+++ ++++|. +||+|..+++|..|+........  
T Consensus       135 ~~~~~~~vsvid~~t~~~~~~~~vG~---------------~P~~~a-~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~  198 (381)
T COG3391         135 AGNGNNTVSVIDAATNKVTATIPVGN---------------TPTGVA-VDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGS  198 (381)
T ss_pred             cccCCceEEEEeCCCCeEEEEEecCC---------------CcceEE-ECCCCCeEEEEecCCCeEEEEeCCCcceeccc
Confidence            9  57999999944422221111111               578888 688886 99999999999999987765552  


Q ss_pred             ----ecCCCCcceEEEEec
Q 014345          174 ----QYGSSFPLGIAVLLA  188 (426)
Q Consensus       174 ----~~~~g~P~GIAv~~g  188 (426)
                          ......|.++++...
T Consensus       199 ~~~~~~~~~~P~~i~v~~~  217 (381)
T COG3391         199 VGSLVGVGTGPAGIAVDPD  217 (381)
T ss_pred             cccccccCCCCceEEECCC
Confidence                334456888888754

>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]

Probab=98.30  E-value=5.5e-06  Score=84.90  Aligned_cols=134  Identities=16%  Similarity=0.190  Sum_probs=95.1

Q ss_pred             CceEEEEcCCC-cEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECC
Q 014345           22 EPYSVEVLPGG-ELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTM  100 (426)
Q Consensus        22 ~P~GIaVd~dG-~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~  100 (426)
                      +|-||+++..| +|||||..- -++++++.|.   ....+++..       +|    ..+...+++.|+++|.||++|+.
T Consensus       116 RPLGl~f~~~ggdL~VaDAYl-GL~~V~p~g~---~a~~l~~~~-------~G----~~~kf~N~ldI~~~g~vyFTDSS  180 (376)
T KOG1520|consen  116 RPLGIRFDKKGGDLYVADAYL-GLLKVGPEGG---LAELLADEA-------EG----KPFKFLNDLDIDPEGVVYFTDSS  180 (376)
T ss_pred             CcceEEeccCCCeEEEEecce-eeEEECCCCC---cceeccccc-------cC----eeeeecCceeEcCCCeEEEeccc
Confidence            89999999966 899999644 6889999873   345555442       22    24677899999999999999985


Q ss_pred             C-----------------CEEEEEc-CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEE
Q 014345          101 N-----------------MAIRKIS-DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIR  162 (426)
Q Consensus       101 N-----------------~rIrk~d-~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr  162 (426)
                      .                 +|+.++| ...+.                ...-..|..|+||++..+...+.+|++...||+
T Consensus       181 sk~~~rd~~~a~l~g~~~GRl~~YD~~tK~~----------------~VLld~L~F~NGlaLS~d~sfvl~~Et~~~ri~  244 (376)
T KOG1520|consen  181 SKYDRRDFVFAALEGDPTGRLFRYDPSTKVT----------------KVLLDGLYFPNGLALSPDGSFVLVAETTTARIK  244 (376)
T ss_pred             cccchhheEEeeecCCCccceEEecCcccch----------------hhhhhcccccccccCCCCCCEEEEEeeccceee
Confidence            3                 2222333 11111                112235788999996555557899999999999


Q ss_pred             EEEcCCCceEe---ec--CCCCcceEEEE
Q 014345          163 EIQLHFDDCAY---QY--GSSFPLGIAVL  186 (426)
Q Consensus       163 ~I~l~~~~~~~---~~--~~g~P~GIAv~  186 (426)
                      ++-+.+.....   ..  --|+|.+|..+
T Consensus       245 rywi~g~k~gt~EvFa~~LPG~PDNIR~~  273 (376)
T KOG1520|consen  245 RYWIKGPKAGTSEVFAEGLPGYPDNIRRD  273 (376)
T ss_pred             eeEecCCccCchhhHhhcCCCCCcceeEC
Confidence            99998866522   22  34789999998

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=98.29  E-value=1.9e-05  Score=78.18  Aligned_cols=150  Identities=15%  Similarity=0.170  Sum_probs=101.5

Q ss_pred             EEEEecCCCCCCCceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEc
Q 014345           10 VETVFDGSKLGIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVD   89 (426)
Q Consensus        10 v~tv~~g~~l~~~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd   89 (426)
                      +-.++..- ++..|+|||+.+||+||++....+-|.+||+-.   +-...+. .+.            +.-+.-+.|-.|
T Consensus       179 ~i~vfpaP-qG~gpyGi~atpdGsvwyaslagnaiaridp~~---~~aev~p-~P~------------~~~~gsRriwsd  241 (353)
T COG4257         179 VISVFPAP-QGGGPYGICATPDGSVWYASLAGNAIARIDPFA---GHAEVVP-QPN------------ALKAGSRRIWSD  241 (353)
T ss_pred             ceeeeccC-CCCCCcceEECCCCcEEEEeccccceEEccccc---CCcceec-CCC------------cccccccccccC
Confidence            33444433 566899999999999999999999999999863   2122221 110            111223568899


Q ss_pred             CCCCEEEEECCCCEEEEEcCC--CcEE--EeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEE
Q 014345           90 DRGNIYIADTMNMAIRKISDS--GVTT--IAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQ  165 (426)
Q Consensus        90 ~dG~LYVADt~N~rIrk~d~g--~Vst--IaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~  165 (426)
                      +.|.+|+++.++.++.+|+..  ....  +-|.                 =..|.++- ||..+++|.+|.+.+.|.+|+
T Consensus       242 pig~~wittwg~g~l~rfdPs~~sW~eypLPgs-----------------~arpys~r-VD~~grVW~sea~agai~rfd  303 (353)
T COG4257         242 PIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGS-----------------KARPYSMR-VDRHGRVWLSEADAGAIGRFD  303 (353)
T ss_pred             ccCcEEEeccCCceeeEeCcccccceeeeCCCC-----------------CCCcceee-eccCCcEEeeccccCceeecC
Confidence            999999999999999999932  2221  2111                 02577776 899999999999999999999


Q ss_pred             cCCCceEeecCCC-CcceEEEEecCCceEEEEE
Q 014345          166 LHFDDCAYQYGSS-FPLGIAVLLAAGFFGYMLA  197 (426)
Q Consensus       166 l~~~~~~~~~~~g-~P~GIAv~~g~g~~Gy~~a  197 (426)
                      +.....+...... .+..+.++   +..|-+|.
T Consensus       304 peta~ftv~p~pr~n~gn~ql~---gr~ge~W~  333 (353)
T COG4257         304 PETARFTVLPIPRPNSGNIQLD---GRPGELWF  333 (353)
T ss_pred             cccceEEEecCCCCCCCceecc---CCCCceee
Confidence            9887766544332 23344444   23444554

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=98.27  E-value=3.1e-06  Score=70.69  Aligned_cols=66  Identities=18%  Similarity=0.320  Sum_probs=51.3

Q ss_pred             eEEEEcCC-CcEEEEEC-----------------CCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcce
Q 014345           24 YSVEVLPG-GELLILDS-----------------ANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKG   85 (426)
Q Consensus        24 ~GIaVd~d-G~LYVaD~-----------------~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~G   85 (426)
                      ++|+|+++ |.||++|+                 .++|++++++.+   ++.++++..                |..|+|
T Consensus         1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t---~~~~vl~~~----------------L~fpNG   61 (89)
T PF03088_consen    1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPST---KETTVLLDG----------------LYFPNG   61 (89)
T ss_dssp             -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTT---TEEEEEEEE----------------ESSEEE
T ss_pred             CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCC---CeEEEehhC----------------CCccCe
Confidence            47899998 99999995                 558999999985   456677644                888999


Q ss_pred             EEEcCCCC-EEEEECCCCEEEEEc
Q 014345           86 LTVDDRGN-IYIADTMNMAIRKIS  108 (426)
Q Consensus        86 IaVd~dG~-LYVADt~N~rIrk~d  108 (426)
                      |++++|+. |+||+++.+||.++-
T Consensus        62 Vals~d~~~vlv~Et~~~Ri~ryw   85 (89)
T PF03088_consen   62 VALSPDESFVLVAETGRYRILRYW   85 (89)
T ss_dssp             EEE-TTSSEEEEEEGGGTEEEEEE
T ss_pred             EEEcCCCCEEEEEeccCceEEEEE
Confidence            99999998 999999999999875

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.25  E-value=4.2e-05  Score=77.56  Aligned_cols=163  Identities=18%  Similarity=0.227  Sum_probs=100.3

Q ss_pred             CCCceEEEEcCCCc-EEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCC-EEEE
Q 014345           20 GIEPYSVEVLPGGE-LLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIA   97 (426)
Q Consensus        20 ~~~P~GIaVd~dG~-LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~-LYVA   97 (426)
                      ...|+.+.++|||+ |||+|.+..+|+.++.+... +.+....... -..           -..|+.|+++++|+ +||+
T Consensus       143 ~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~-~~l~~~~~~~-~~~-----------G~GPRh~~f~pdg~~~Yv~  209 (345)
T PF10282_consen  143 GPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDT-GKLTPVDSIK-VPP-----------GSGPRHLAFSPDGKYAYVV  209 (345)
T ss_dssp             STCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS--TEEEEEEEE-CST-----------TSSEEEEEE-TTSSEEEEE
T ss_pred             cccceeEEECCCCCEEEEEecCCCEEEEEEEeCCC-ceEEEeeccc-ccc-----------CCCCcEEEEcCCcCEEEEe
Confidence            45899999999987 99999999999999876422 1222211000 011           12499999999976 9999


Q ss_pred             ECCCCEEEEEc-C--CC-cEE---EeCCccCCCCCCCCCCcccccCCCCCeeEEECCCC-eEEEEECCCCeEEEEEcCCC
Q 014345           98 DTMNMAIRKIS-D--SG-VTT---IAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSC-SLLVIDRGNRAIREIQLHFD  169 (426)
Q Consensus        98 Dt~N~rIrk~d-~--g~-Vst---IaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G-~LYVaDsgN~rIr~I~l~~~  169 (426)
                      +..++.|..++ +  .+ ++.   +.-...+.           ..-..|.+|++ +++| .|||++++.+.|..++++..
T Consensus       210 ~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~-----------~~~~~~~~i~i-spdg~~lyvsnr~~~sI~vf~~d~~  277 (345)
T PF10282_consen  210 NELSNTVSVFDYDPSDGSLTEIQTISTLPEGF-----------TGENAPAEIAI-SPDGRFLYVSNRGSNSISVFDLDPA  277 (345)
T ss_dssp             ETTTTEEEEEEEETTTTEEEEEEEEESCETTS-----------CSSSSEEEEEE--TTSSEEEEEECTTTEEEEEEECTT
T ss_pred             cCCCCcEEEEeecccCCceeEEEEeeeccccc-----------cccCCceeEEE-ecCCCEEEEEeccCCEEEEEEEecC
Confidence            99999999888 3  22 322   22111110           01147899995 5555 79999999999999998543


Q ss_pred             --ceEe----ecCCCCcceEEEEecCCceEEEEEEEecccceeeecc
Q 014345          170 --DCAY----QYGSSFPLGIAVLLAAGFFGYMLALLQRRVGTIVSSQ  210 (426)
Q Consensus       170 --~~~~----~~~~g~P~GIAv~~g~g~~Gy~~a~lq~~~g~~~~s~  210 (426)
                        ....    ..+...|.+++++...   -+++..-|..-...++..
T Consensus       278 ~g~l~~~~~~~~~G~~Pr~~~~s~~g---~~l~Va~~~s~~v~vf~~  321 (345)
T PF10282_consen  278 TGTLTLVQTVPTGGKFPRHFAFSPDG---RYLYVANQDSNTVSVFDI  321 (345)
T ss_dssp             TTTEEEEEEEEESSSSEEEEEE-TTS---SEEEEEETTTTEEEEEEE
T ss_pred             CCceEEEEEEeCCCCCccEEEEeCCC---CEEEEEecCCCeEEEEEE
Confidence              2221    2233459999996442   234555555555555543

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=98.22  E-value=1.9e-06  Score=56.67  Aligned_cols=27  Identities=26%  Similarity=0.325  Sum_probs=25.3

Q ss_pred             CCceEEEEcCCCcEEEEECCCCeEEEE
Q 014345           21 IEPYSVEVLPGGELLILDSANSNLYRI   47 (426)
Q Consensus        21 ~~P~GIaVd~dG~LYVaD~~n~rI~ki   47 (426)
                      ..|+||+++++|+|||+|+.||||+++
T Consensus         2 ~~P~gvav~~~g~i~VaD~~n~rV~vf   28 (28)
T PF01436_consen    2 NYPHGVAVDSDGNIYVADSGNHRVQVF   28 (28)
T ss_dssp             SSEEEEEEETTSEEEEEECCCTEEEEE
T ss_pred             cCCcEEEEeCCCCEEEEECCCCEEEEC
Confidence            379999999999999999999999986

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.16  E-value=8.2e-05  Score=75.43  Aligned_cols=125  Identities=14%  Similarity=0.227  Sum_probs=83.6

Q ss_pred             CCCCCceEEEEcCCCc-EEEEECCCCeEEEEeCCCCcccccEEEec---CCCCcccccCCcccccccCCcceEEEcCCCC
Q 014345           18 KLGIEPYSVEVLPGGE-LLILDSANSNLYRISSSLSLYSRPKLVAG---SAEGYSGHVDGKPREARMNHPKGLTVDDRGN   93 (426)
Q Consensus        18 ~l~~~P~GIaVd~dG~-LYVaD~~n~rI~kid~dg~~~g~v~~vaG---~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~   93 (426)
                      ..+..|+.++++++|. +||+...++.|..++.+... +.+..+..   .+.+..+          -+.|.+|++++||+
T Consensus       189 ~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~-g~~~~~~~~~~~~~~~~~----------~~~~~~i~ispdg~  257 (345)
T PF10282_consen  189 PPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSD-GSLTEIQTISTLPEGFTG----------ENAPAEIAISPDGR  257 (345)
T ss_dssp             STTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTT-TEEEEEEEEESCETTSCS----------SSSEEEEEE-TTSS
T ss_pred             ccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccC-CceeEEEEeeeccccccc----------cCCceeEEEecCCC
Confidence            4456799999999986 89999999999988766211 33333221   1111111          24799999999997


Q ss_pred             -EEEEECCCCEEEEEc-C---CCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCC-eEEEEECCCCeEEEEEcC
Q 014345           94 -IYIADTMNMAIRKIS-D---SGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSC-SLLVIDRGNRAIREIQLH  167 (426)
Q Consensus        94 -LYVADt~N~rIrk~d-~---g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G-~LYVaDsgN~rIr~I~l~  167 (426)
                       |||++.+.+.|..|+ +   +.++.+.--..              .-..|.++++ +++| .|||++...+.|.+++.+
T Consensus       258 ~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~--------------~G~~Pr~~~~-s~~g~~l~Va~~~s~~v~vf~~d  322 (345)
T PF10282_consen  258 FLYVSNRGSNSISVFDLDPATGTLTLVQTVPT--------------GGKFPRHFAF-SPDGRYLYVANQDSNTVSVFDID  322 (345)
T ss_dssp             EEEEEECTTTEEEEEEECTTTTTEEEEEEEEE--------------SSSSEEEEEE--TTSSEEEEEETTTTEEEEEEEE
T ss_pred             EEEEEeccCCEEEEEEEecCCCceEEEEEEeC--------------CCCCccEEEE-eCCCCEEEEEecCCCeEEEEEEe
Confidence             999999999998887 2   33443321100              0125999995 5555 799999999999998875


Q ss_pred             C
Q 014345          168 F  168 (426)
Q Consensus       168 ~  168 (426)
                      .
T Consensus       323 ~  323 (345)
T PF10282_consen  323 P  323 (345)
T ss_dssp             T
T ss_pred             C
Confidence            4

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=98.12  E-value=0.00015  Score=72.18  Aligned_cols=144  Identities=14%  Similarity=0.116  Sum_probs=88.4

Q ss_pred             CCCceEEEEcCCCc-EEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCC-EEEE
Q 014345           20 GIEPYSVEVLPGGE-LLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIA   97 (426)
Q Consensus        20 ~~~P~GIaVd~dG~-LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~-LYVA   97 (426)
                      +..|++++++++|. |||++...+.|..++.+.. .+.+..+.--. .......+      -.+|.+|+++++|+ |||+
T Consensus       174 g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~-~~~~~~~~~~~-~~p~~~~~------~~~~~~i~~~pdg~~lyv~  245 (330)
T PRK11028        174 GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDP-HGEIECVQTLD-MMPADFSD------TRWAADIHITPDGRHLYAC  245 (330)
T ss_pred             CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCC-CCCEEEEEEEe-cCCCcCCC------CccceeEEECCCCCEEEEe
Confidence            45699999999987 8899988899888876521 02222221000 00000011      13567899999987 9999


Q ss_pred             ECCCCEEEEEc---CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCC-eEEEEECCCCeEEEEEcCCCc--e
Q 014345           98 DTMNMAIRKIS---DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSC-SLLVIDRGNRAIREIQLHFDD--C  171 (426)
Q Consensus        98 Dt~N~rIrk~d---~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G-~LYVaDsgN~rIr~I~l~~~~--~  171 (426)
                      +...+.|..|+   +++..++.+...   .           -..|+++++ +++| .|||++.+++.|..++.+...  .
T Consensus       246 ~~~~~~I~v~~i~~~~~~~~~~~~~~---~-----------~~~p~~~~~-~~dg~~l~va~~~~~~v~v~~~~~~~g~l  310 (330)
T PRK11028        246 DRTASLISVFSVSEDGSVLSFEGHQP---T-----------ETQPRGFNI-DHSGKYLIAAGQKSHHISVYEIDGETGLL  310 (330)
T ss_pred             cCCCCeEEEEEEeCCCCeEEEeEEEe---c-----------cccCCceEE-CCCCCEEEEEEccCCcEEEEEEcCCCCcE
Confidence            98888898887   333333333100   0           026888884 5555 899999989999998875422  2


Q ss_pred             Ee---ecCCCCcceEEEE
Q 014345          172 AY---QYGSSFPLGIAVL  186 (426)
Q Consensus       172 ~~---~~~~g~P~GIAv~  186 (426)
                      ..   ......|..|+++
T Consensus       311 ~~~~~~~~g~~P~~~~~~  328 (330)
T PRK11028        311 TELGRYAVGQGPMWVSVL  328 (330)
T ss_pred             EEccccccCCCceEEEEE
Confidence            21   1123457777663

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=97.96  E-value=0.00036  Score=69.42  Aligned_cols=121  Identities=11%  Similarity=0.087  Sum_probs=78.8

Q ss_pred             CCceEEEEcCCCc-EEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCC-EEEEE
Q 014345           21 IEPYSVEVLPGGE-LLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIAD   98 (426)
Q Consensus        21 ~~P~GIaVd~dG~-LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~-LYVAD   98 (426)
                      ..|.+|+++++|+ ||++....++|..++.+..  +.+.......       .      ....|.+++++++|+ +||++
T Consensus        80 ~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~--g~~~~~~~~~-------~------~~~~~~~~~~~p~g~~l~v~~  144 (330)
T PRK11028         80 GSPTHISTDHQGRFLFSASYNANCVSVSPLDKD--GIPVAPIQII-------E------GLEGCHSANIDPDNRTLWVPC  144 (330)
T ss_pred             CCceEEEECCCCCEEEEEEcCCCeEEEEEECCC--CCCCCceeec-------c------CCCcccEeEeCCCCCEEEEee
Confidence            3799999999987 8899888888888866421  1111111110       0      124589999999885 88999


Q ss_pred             CCCCEEEEEc-CC-C-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcC
Q 014345           99 TMNMAIRKIS-DS-G-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLH  167 (426)
Q Consensus        99 t~N~rIrk~d-~g-~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~  167 (426)
                      .+.+.|.+++ +. + +..........    .       .=..|.++++.++...|||++...+.|..++.+
T Consensus       145 ~~~~~v~v~d~~~~g~l~~~~~~~~~~----~-------~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~  205 (330)
T PRK11028        145 LKEDRIRLFTLSDDGHLVAQEPAEVTT----V-------EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLK  205 (330)
T ss_pred             CCCCEEEEEEECCCCcccccCCCceec----C-------CCCCCceEEECCCCCEEEEEecCCCEEEEEEEe
Confidence            9999999998 32 2 21110000000    0       012588898544344789999999999999986

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=97.88  E-value=0.0013  Score=69.76  Aligned_cols=92  Identities=18%  Similarity=0.312  Sum_probs=62.8

Q ss_pred             eecCCcEEEEEecCCCCCCCceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCC
Q 014345            3 KFESGYTVETVFDGSKLGIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNH   82 (426)
Q Consensus         3 k~~~G~tv~tv~~g~~l~~~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~   82 (426)
                      +...++++++++++..   .|.+|++.+||+|||++...++|++++..+   +....+.+.+.-..        .+....
T Consensus        15 ~~p~~f~~~~va~GL~---~Pw~maflPDG~llVtER~~G~I~~v~~~~---~~~~~~~~l~~v~~--------~~ge~G   80 (454)
T TIGR03606        15 AASENFDKKVLLSGLN---KPWALLWGPDNQLWVTERATGKILRVNPET---GEVKVVFTLPEIVN--------DAQHNG   80 (454)
T ss_pred             cCCCCcEEEEEECCCC---CceEEEEcCCCeEEEEEecCCEEEEEeCCC---CceeeeecCCceec--------cCCCCc
Confidence            4577889998887655   899999999999999998789999998764   22333333321100        011345


Q ss_pred             cceEEEcCC-------CCEEEEECC---------CCEEEEEc
Q 014345           83 PKGLTVDDR-------GNIYIADTM---------NMAIRKIS  108 (426)
Q Consensus        83 P~GIaVd~d-------G~LYVADt~---------N~rIrk~d  108 (426)
                      +.|||++++       +.|||+-+.         ..+|.++.
T Consensus        81 Llglal~PdF~~~~~n~~lYvsyt~~~~~~~~~~~~~I~R~~  122 (454)
T TIGR03606        81 LLGLALHPDFMQEKGNPYVYISYTYKNGDKELPNHTKIVRYT  122 (454)
T ss_pred             eeeEEECCCccccCCCcEEEEEEeccCCCCCccCCcEEEEEE
Confidence            789999865       359998422         35777765

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]

Probab=97.81  E-value=0.00023  Score=78.59  Aligned_cols=161  Identities=21%  Similarity=0.188  Sum_probs=109.7

Q ss_pred             CcEEEEEecCCCCCCCceEEEEcCCC-cEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcce
Q 014345            7 GYTVETVFDGSKLGIEPYSVEVLPGG-ELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKG   85 (426)
Q Consensus         7 G~tv~tv~~g~~l~~~P~GIaVd~dG-~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~G   85 (426)
                      |..-+++++ .+|. .|.|||||-.+ ++|-+|+.+.+|-+-..+|++   -+++.-.               .|-+|++
T Consensus      1056 G~Ep~ti~n-~~L~-SPEGiAVDh~~Rn~ywtDS~lD~IevA~LdG~~---rkvLf~t---------------dLVNPR~ 1115 (1289)
T KOG1214|consen 1056 GAEPETIVN-SGLI-SPEGIAVDHIRRNMYWTDSVLDKIEVALLDGSE---RKVLFYT---------------DLVNPRA 1115 (1289)
T ss_pred             CCCCceeec-ccCC-CccceeeeeccceeeeeccccchhheeecCCce---eeEEEee---------------cccCcce
Confidence            444455554 3333 89999999854 699999999999988888643   2222211               2788999


Q ss_pred             EEEcC-CCCEEEEECC--CCEEEEEc-CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeE
Q 014345           86 LTVDD-RGNIYIADTM--NMAIRKIS-DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAI  161 (426)
Q Consensus        86 IaVd~-dG~LYVADt~--N~rIrk~d-~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rI  161 (426)
                      |++|+ .|+||-+|+.  |=.|-..+ +|+-..|.-               ...+-.|++|.+..-...|--+|.+++|+
T Consensus      1116 iv~D~~rgnLYwtDWnRenPkIets~mDG~NrRili---------------n~DigLPNGLtfdpfs~~LCWvDAGt~rl 1180 (1289)
T KOG1214|consen 1116 IVVDPIRGNLYWTDWNRENPKIETSSMDGENRRILI---------------NTDIGLPNGLTFDPFSKLLCWVDAGTKRL 1180 (1289)
T ss_pred             EEeecccCceeeccccccCCcceeeccCCccceEEe---------------ecccCCCCCceeCcccceeeEEecCCcce
Confidence            99999 6899999984  55666666 665333321               11244799999655556778899999999


Q ss_pred             EEEEcCCCce-EeecCCCCcceEEEEecCCceEEEEEEEecccceeee
Q 014345          162 REIQLHFDDC-AYQYGSSFPLGIAVLLAAGFFGYMLALLQRRVGTIVS  208 (426)
Q Consensus       162 r~I~l~~~~~-~~~~~~g~P~GIAv~~g~g~~Gy~~a~lq~~~g~~~~  208 (426)
                      -.+..++... ..+...-.|.+|.-+... |   .  ..-|+.+.+++
T Consensus      1181 eC~~p~g~gRR~i~~~LqYPF~itsy~~~-f---Y--~TDWk~n~vvs 1222 (1289)
T KOG1214|consen 1181 ECTLPDGTGRRVIQNNLQYPFSITSYADH-F---Y--HTDWKRNGVVS 1222 (1289)
T ss_pred             eEecCCCCcchhhhhcccCceeeeecccc-c---e--eeccccCceEE
Confidence            9999887543 345666678888776442 1   2  23556655554

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=97.77  E-value=8.6e-05  Score=62.02  Aligned_cols=68  Identities=21%  Similarity=0.262  Sum_probs=48.9

Q ss_pred             ceEEEcCC-CCEEEEECC-----------------CCEEEEEc-C-CCcEEEeCCccCCCCCCCCCCcccccCCCCCeeE
Q 014345           84 KGLTVDDR-GNIYIADTM-----------------NMAIRKIS-D-SGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVV  143 (426)
Q Consensus        84 ~GIaVd~d-G~LYVADt~-----------------N~rIrk~d-~-g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa  143 (426)
                      ++|+|+++ |.||++|+.                 ++|+.++| . +.+++++.+                 |..|+||+
T Consensus         1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~-----------------L~fpNGVa   63 (89)
T PF03088_consen    1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDG-----------------LYFPNGVA   63 (89)
T ss_dssp             -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEE-----------------ESSEEEEE
T ss_pred             CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhC-----------------CCccCeEE
Confidence            47999998 999999973                 57999999 3 335666642                 66899999


Q ss_pred             EECCCCeEEEEECCCCeEEEEEcCC
Q 014345          144 YIGSSCSLLVIDRGNRAIREIQLHF  168 (426)
Q Consensus       144 ~vd~~G~LYVaDsgN~rIr~I~l~~  168 (426)
                      +..+...|+|+++...||.++-+.+
T Consensus        64 ls~d~~~vlv~Et~~~Ri~rywl~G   88 (89)
T PF03088_consen   64 LSPDESFVLVAETGRYRILRYWLKG   88 (89)
T ss_dssp             E-TTSSEEEEEEGGGTEEEEEESSS
T ss_pred             EcCCCCEEEEEeccCceEEEEEEeC
Confidence            5444446999999999999998765

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]

Probab=97.73  E-value=0.00027  Score=78.06  Aligned_cols=133  Identities=17%  Similarity=0.153  Sum_probs=100.8

Q ss_pred             CceEEEEcC-CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCC-CCEEEEEC
Q 014345           22 EPYSVEVLP-GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDR-GNIYIADT   99 (426)
Q Consensus        22 ~P~GIaVd~-dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~d-G~LYVADt   99 (426)
                      -|.||++|- +--||-+|...+.|.+-+.+|   ++.++++.+.               |.+|.|||||.. .++|-+|+
T Consensus      1026 IiVGidfDC~e~mvyWtDv~g~SI~rasL~G---~Ep~ti~n~~---------------L~SPEGiAVDh~~Rn~ywtDS 1087 (1289)
T KOG1214|consen 1026 IIVGIDFDCRERMVYWTDVAGRSISRASLEG---AEPETIVNSG---------------LISPEGIAVDHIRRNMYWTDS 1087 (1289)
T ss_pred             eeeeeecccccceEEEeecCCCccccccccC---CCCceeeccc---------------CCCccceeeeeccceeeeecc
Confidence            367888877 444899999889999988886   4566666542               889999999975 57999999


Q ss_pred             CCCEEEEEc-CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEEC--CCCeEEEEEcCCCceE--ee
Q 014345          100 MNMAIRKIS-DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDR--GNRAIREIQLHFDDCA--YQ  174 (426)
Q Consensus       100 ~N~rIrk~d-~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDs--gN~rIr~I~l~~~~~~--~~  174 (426)
                      .+.+|-+.. +|....+.-               ...|.+|.+|+...-.++||-+|+  .|-.|-..++++....  .+
T Consensus      1088 ~lD~IevA~LdG~~rkvLf---------------~tdLVNPR~iv~D~~rgnLYwtDWnRenPkIets~mDG~NrRilin 1152 (1289)
T KOG1214|consen 1088 VLDKIEVALLDGSERKVLF---------------YTDLVNPRAIVVDPIRGNLYWTDWNRENPKIETSSMDGENRRILIN 1152 (1289)
T ss_pred             ccchhheeecCCceeeEEE---------------eecccCcceEEeecccCceeeccccccCCcceeeccCCccceEEee
Confidence            999998887 776433321               124778999995555789999997  4677888888875543  45


Q ss_pred             cCCCCcceEEEEe
Q 014345          175 YGSSFPLGIAVLL  187 (426)
Q Consensus       175 ~~~g~P~GIAv~~  187 (426)
                      ...++|.|+.++.
T Consensus      1153 ~DigLPNGLtfdp 1165 (1289)
T KOG1214|consen 1153 TDIGLPNGLTFDP 1165 (1289)
T ss_pred             cccCCCCCceeCc
Confidence            6778999998773

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=97.54  E-value=0.013  Score=55.36  Aligned_cols=135  Identities=14%  Similarity=0.155  Sum_probs=84.3

Q ss_pred             CceEEEEcCCCc-EEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCC-EEEEEC
Q 014345           22 EPYSVEVLPGGE-LLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIADT   99 (426)
Q Consensus        22 ~P~GIaVd~dG~-LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~-LYVADt   99 (426)
                      .|..++++++|. ||++....+.|..++.....  .+..+-...   .+...      .-..|.+++++++|+ +|++..
T Consensus       158 ~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~--~~~~~~~~~---~~~~~------~~~~~~~i~~s~dg~~~~~~~~  226 (300)
T TIGR03866       158 RPRFAEFTADGKELWVSSEIGGTVSVIDVATRK--VIKKITFEI---PGVHP------EAVQPVGIKLTKDGKTAFVALG  226 (300)
T ss_pred             CccEEEECCCCCEEEEEcCCCCEEEEEEcCcce--eeeeeeecc---ccccc------ccCCccceEECCCCCEEEEEcC
Confidence            588899999987 55665557889999887421  111111100   00000      012588999999987 588887


Q ss_pred             CCCEEEEEc--CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCC-eEEEEECCCCeEEEEEcCCCceEe-ec
Q 014345          100 MNMAIRKIS--DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSC-SLLVIDRGNRAIREIQLHFDDCAY-QY  175 (426)
Q Consensus       100 ~N~rIrk~d--~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G-~LYVaDsgN~rIr~I~l~~~~~~~-~~  175 (426)
                      .+++|.+++  ++.+......  +               ..+.++++ .++| .||++....+.|.++++....+.. ..
T Consensus       227 ~~~~i~v~d~~~~~~~~~~~~--~---------------~~~~~~~~-~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~  288 (300)
T TIGR03866       227 PANRVAVVDAKTYEVLDYLLV--G---------------QRVWQLAF-TPDEKYLLTTNGVSNDVSVIDVAALKVIKSIK  288 (300)
T ss_pred             CCCeEEEEECCCCcEEEEEEe--C---------------CCcceEEE-CCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence            788899998  3333322210  0               13677885 5555 677777778899999998876532 23


Q ss_pred             CCCCcceEEE
Q 014345          176 GSSFPLGIAV  185 (426)
Q Consensus       176 ~~g~P~GIAv  185 (426)
                      ....|.+||+
T Consensus       289 ~~~~~~~~~~  298 (300)
T TIGR03866       289 VGRLPWGVVV  298 (300)
T ss_pred             cccccceeEe
Confidence            3356888875

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]

Probab=97.52  E-value=0.0014  Score=67.57  Aligned_cols=100  Identities=21%  Similarity=0.338  Sum_probs=71.8

Q ss_pred             CCcceEEEcCCC-CEEEEECCCCEEEEEc-CCCc-EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECC
Q 014345           81 NHPKGLTVDDRG-NIYIADTMNMAIRKIS-DSGV-TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRG  157 (426)
Q Consensus        81 n~P~GIaVd~dG-~LYVADt~N~rIrk~d-~g~V-stIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsg  157 (426)
                      ..|-||+++..| +|||||.+ --+.+++ .++. +.++....|            ..|...+++. ++++|.||++|+.
T Consensus       115 GRPLGl~f~~~ggdL~VaDAY-lGL~~V~p~g~~a~~l~~~~~G------------~~~kf~N~ld-I~~~g~vyFTDSS  180 (376)
T KOG1520|consen  115 GRPLGIRFDKKGGDLYVADAY-LGLLKVGPEGGLAELLADEAEG------------KPFKFLNDLD-IDPEGVVYFTDSS  180 (376)
T ss_pred             CCcceEEeccCCCeEEEEecc-eeeEEECCCCCcceeccccccC------------eeeeecCcee-EcCCCeEEEeccc
Confidence            469999999976 99999986 5688888 6665 334432222            2455677887 6779999999963


Q ss_pred             -----------------CCeEEEEEcCCCce-EeecCCCCcceEEEEecCCceEE
Q 014345          158 -----------------NRAIREIQLHFDDC-AYQYGSSFPLGIAVLLAAGFFGY  194 (426)
Q Consensus       158 -----------------N~rIr~I~l~~~~~-~~~~~~g~P~GIAv~~g~g~~Gy  194 (426)
                                       ++|+.++|+.+... ....+..+|.|+|+.-...++.+
T Consensus       181 sk~~~rd~~~a~l~g~~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfvl~  235 (376)
T KOG1520|consen  181 SKYDRRDFVFAALEGDPTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFVLV  235 (376)
T ss_pred             cccchhheEEeeecCCCccceEEecCcccchhhhhhcccccccccCCCCCCEEEE
Confidence                             47777887776554 34567788999998877666544

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=97.42  E-value=0.0034  Score=63.69  Aligned_cols=125  Identities=19%  Similarity=0.224  Sum_probs=73.9

Q ss_pred             CCceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCC----CCEEE
Q 014345           21 IEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDR----GNIYI   96 (426)
Q Consensus        21 ~~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~d----G~LYV   96 (426)
                      ..|.+|++.|||.|||++. .++|++++.++..   ...+.....-...         ......||+++++    +.|||
T Consensus         2 ~~P~~~a~~pdG~l~v~e~-~G~i~~~~~~g~~---~~~v~~~~~v~~~---------~~~gllgia~~p~f~~n~~lYv   68 (331)
T PF07995_consen    2 NNPRSMAFLPDGRLLVAER-SGRIWVVDKDGSL---KTPVADLPEVFAD---------GERGLLGIAFHPDFASNGYLYV   68 (331)
T ss_dssp             SSEEEEEEETTSCEEEEET-TTEEEEEETTTEE---CEEEEE-TTTBTS---------TTBSEEEEEE-TTCCCC-EEEE
T ss_pred             CCceEEEEeCCCcEEEEeC-CceEEEEeCCCcC---cceeccccccccc---------ccCCcccceeccccCCCCEEEE
Confidence            3799999999999999997 9999999976432   1333332111111         1334689999984    88999


Q ss_pred             EECCC--------CEEEEEc--CC--C---cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEEC-----
Q 014345           97 ADTMN--------MAIRKIS--DS--G---VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDR-----  156 (426)
Q Consensus        97 ADt~N--------~rIrk~d--~g--~---VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDs-----  156 (426)
                      +-+..        .+|.++.  .+  .   ..+|.-+....          ....-.-..|+ ++++|.|||+--     
T Consensus        69 ~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~----------~~~~H~g~~l~-fgpDG~LYvs~G~~~~~  137 (331)
T PF07995_consen   69 YYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDT----------SSGNHNGGGLA-FGPDGKLYVSVGDGGND  137 (331)
T ss_dssp             EEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-----------CSSSS-EEEEE-E-TTSEEEEEEB-TTTG
T ss_pred             EEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCC----------CCCCCCCcccc-CCCCCcEEEEeCCCCCc
Confidence            98732        4566655  33  1   22232211110          00111234577 689999999742     


Q ss_pred             --------CCCeEEEEEcCCC
Q 014345          157 --------GNRAIREIQLHFD  169 (426)
Q Consensus       157 --------gN~rIr~I~l~~~  169 (426)
                              ..+.|.+|++++.
T Consensus       138 ~~~~~~~~~~G~ilri~~dG~  158 (331)
T PF07995_consen  138 DNAQDPNSLRGKILRIDPDGS  158 (331)
T ss_dssp             GGGCSTTSSTTEEEEEETTSS
T ss_pred             ccccccccccceEEEecccCc
Confidence                    2477999998763

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.28  E-value=0.00077  Score=66.24  Aligned_cols=76  Identities=25%  Similarity=0.384  Sum_probs=46.0

Q ss_pred             CCceEEEEcC-CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEEC
Q 014345           21 IEPYSVEVLP-GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADT   99 (426)
Q Consensus        21 ~~P~GIaVd~-dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt   99 (426)
                      ..|.+|++++ .|+|||....+.+|+.+|.+|...+...+..|.    .|      ....+.+|.|||+|++|+|||+.-
T Consensus       171 ~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~----~g------l~~~~~QpEGIa~d~~G~LYIvsE  240 (248)
T PF06977_consen  171 RDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGF----HG------LSKDIPQPEGIAFDPDGNLYIVSE  240 (248)
T ss_dssp             S---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTG----GG-------SS---SEEEEEE-TT--EEEEET
T ss_pred             ccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcc----cC------cccccCCccEEEECCCCCEEEEcC
Confidence            4799999999 689999999999999999986543333333221    11      223588999999999999999987


Q ss_pred             CCCEEEEE
Q 014345          100 MNMAIRKI  107 (426)
Q Consensus       100 ~N~rIrk~  107 (426)
                      -| +..+|
T Consensus       241 pN-lfy~f  247 (248)
T PF06977_consen  241 PN-LFYRF  247 (248)
T ss_dssp             TT-EEEEE
T ss_pred             Cc-eEEEe
Confidence            65 44443

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=97.19  E-value=0.026  Score=57.65  Aligned_cols=146  Identities=16%  Similarity=0.196  Sum_probs=87.9

Q ss_pred             CCCCCceEEEEcCCCc-EEEEECCCCeEEEEeCCCC--cccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCC-
Q 014345           18 KLGIEPYSVEVLPGGE-LLILDSANSNLYRISSSLS--LYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-   93 (426)
Q Consensus        18 ~l~~~P~GIaVd~dG~-LYVaD~~n~rI~kid~dg~--~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~-   93 (426)
                      .-+.+|.-|++.|+|. .|+..--++.|.++..+..  .+..+.++.--+..+.|.          ++-..|.++++|+ 
T Consensus       188 ~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~----------~~~aaIhis~dGrF  257 (346)
T COG2706         188 KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGT----------NWAAAIHISPDGRF  257 (346)
T ss_pred             CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCC----------CceeEEEECCCCCE
Confidence            4456899999999998 6888888899888766642  223333443333333332          2334689999998 


Q ss_pred             EEEEECCCCEEEEEc---CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCc
Q 014345           94 IYIADTMNMAIRKIS---DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDD  170 (426)
Q Consensus        94 LYVADt~N~rIrk~d---~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~  170 (426)
                      ||++|++-+.|..|.   +++...+.+-..           .  .-..|.+..+.+....|+++.-..+.|.++..+...
T Consensus       258 LYasNRg~dsI~~f~V~~~~g~L~~~~~~~-----------t--eg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~T  324 (346)
T COG2706         258 LYASNRGHDSIAVFSVDPDGGKLELVGITP-----------T--EGQFPRDFNINPSGRFLIAANQKSDNITVFERDKET  324 (346)
T ss_pred             EEEecCCCCeEEEEEEcCCCCEEEEEEEec-----------c--CCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCC
Confidence            999999988888776   445333332100           0  112477777434444567776666667777666543


Q ss_pred             eEe--e-cCCCCcceEEEE
Q 014345          171 CAY--Q-YGSSFPLGIAVL  186 (426)
Q Consensus       171 ~~~--~-~~~g~P~GIAv~  186 (426)
                      ...  . .....|..+|+.
T Consensus       325 G~L~~~~~~~~~p~Pvcv~  343 (346)
T COG2706         325 GRLTLLGRYAVVPEPVCVK  343 (346)
T ss_pred             ceEEecccccCCCCcEEEE
Confidence            322  1 223345555554

>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function

Probab=97.01  E-value=0.0083  Score=64.94  Aligned_cols=81  Identities=26%  Similarity=0.327  Sum_probs=53.7

Q ss_pred             CCCceEEEEcC-CCcEEEEECCCC-------------------eEEEEeCCCCc----cccc--EEEecCCCCcccccCC
Q 014345           20 GIEPYSVEVLP-GGELLILDSANS-------------------NLYRISSSLSL----YSRP--KLVAGSAEGYSGHVDG   73 (426)
Q Consensus        20 ~~~P~GIaVd~-dG~LYVaD~~n~-------------------rI~kid~dg~~----~g~v--~~vaG~~~G~~G~~dG   73 (426)
                      ...|.+|.+++ +|.|||+.+.++                   .|+++...+.-    ..++  .+++|.+.-......+
T Consensus       349 f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~~~  428 (524)
T PF05787_consen  349 FDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNGSN  428 (524)
T ss_pred             ccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCcccccccccC
Confidence            35899999999 689999987666                   79999877531    0122  3333432111111122


Q ss_pred             cccccccCCcceEEEcCCCCEEEEECC
Q 014345           74 KPREARMNHPKGLTVDDRGNIYIADTM  100 (426)
Q Consensus        74 ~a~~A~Ln~P~GIaVd~dG~LYVADt~  100 (426)
                      ......|+.|.+|++|++|+|||+.-.
T Consensus       429 ~~~~~~f~sPDNL~~d~~G~LwI~eD~  455 (524)
T PF05787_consen  429 KCDDNGFASPDNLAFDPDGNLWIQEDG  455 (524)
T ss_pred             cccCCCcCCCCceEECCCCCEEEEeCC
Confidence            234456999999999999999988543

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=96.97  E-value=0.28  Score=50.27  Aligned_cols=194  Identities=17%  Similarity=0.175  Sum_probs=114.2

Q ss_pred             EEEEEecCCCCCCCceEEEEcCCCc-EEEEECCCCeEEEEeC--CCCcccccEEEecCCCCcccccCCcccccccCCcce
Q 014345            9 TVETVFDGSKLGIEPYSVEVLPGGE-LLILDSANSNLYRISS--SLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKG   85 (426)
Q Consensus         9 tv~tv~~g~~l~~~P~GIaVd~dG~-LYVaD~~n~rI~kid~--dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~G   85 (426)
                      ..+.+..-...+..|.-|++|++|. ||+|.+..+.|.++-.  +|.....+..+...+  ...+     ....-.++.-
T Consensus        77 ~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g--~~p~-----~rQ~~~h~H~  149 (346)
T COG2706          77 RLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTG--SGPH-----ERQESPHVHS  149 (346)
T ss_pred             eEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCC--CCCC-----ccccCCccce
Confidence            3444444444456679999999996 7888888887766644  443311122332221  1111     1111335677


Q ss_pred             EEEcCCCC-EEEEECCCCEEEEEc--CCCcEE--EeCCccCCCCCC-------------------------CC--C----
Q 014345           86 LTVDDRGN-IYIADTMNMAIRKIS--DSGVTT--IAGGKWGRGGGH-------------------------VD--G----  129 (426)
Q Consensus        86 IaVd~dG~-LYVADt~N~rIrk~d--~g~Vst--IaGg~~g~~~G~-------------------------~d--G----  129 (426)
                      .-++++|+ |+++|-+..||..++  +|....  .+--+.|.+..+                         ..  |    
T Consensus       150 a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~  229 (346)
T COG2706         150 ANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEE  229 (346)
T ss_pred             eeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEE
Confidence            88889884 899999999999888  443211  111111110000                         00  1    


Q ss_pred             ----CcccccC---CCCCeeEEECCCC-eEEEEECCCCeEEEEEcCCCce--Ee---ecCCC-CcceEEEEecCCceEEE
Q 014345          130 ----PSEDAKF---SNDFDVVYIGSSC-SLLVIDRGNRAIREIQLHFDDC--AY---QYGSS-FPLGIAVLLAAGFFGYM  195 (426)
Q Consensus       130 ----~~~~a~f---~~P~gIa~vd~~G-~LYVaDsgN~rIr~I~l~~~~~--~~---~~~~g-~P~GIAv~~g~g~~Gy~  195 (426)
                          ....+.|   ++-.+|. +.++| -||++|++.+.|..+..+....  ..   ...-+ .|.++.+..++.   +.
T Consensus       230 lQ~i~tlP~dF~g~~~~aaIh-is~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~---~L  305 (346)
T COG2706         230 LQTIDTLPEDFTGTNWAAAIH-ISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGR---FL  305 (346)
T ss_pred             eeeeccCccccCCCCceeEEE-ECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCC---EE
Confidence                1112224   3445566 46666 6999999999998888775433  21   22333 488888886644   47


Q ss_pred             EEEEecccceeeeccCCC
Q 014345          196 LALLQRRVGTIVSSQNDH  213 (426)
Q Consensus       196 ~a~lq~~~g~~~~s~~~~  213 (426)
                      .|+-|......++.....
T Consensus       306 iaa~q~sd~i~vf~~d~~  323 (346)
T COG2706         306 IAANQKSDNITVFERDKE  323 (346)
T ss_pred             EEEccCCCcEEEEEEcCC
Confidence            888888888888877665

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=96.82  E-value=0.033  Score=54.80  Aligned_cols=77  Identities=12%  Similarity=0.170  Sum_probs=44.3

Q ss_pred             ccCCcceEEEcC-CCCEEEEECCCCEEEEEc-CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEEC
Q 014345           79 RMNHPKGLTVDD-RGNIYIADTMNMAIRKIS-DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDR  156 (426)
Q Consensus        79 ~Ln~P~GIaVd~-dG~LYVADt~N~rIrk~d-~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDs  156 (426)
                      .+..|.+|++++ .|.|||....+.+|..+| +|.+.....-..+.       ......+..|-||| .|++|+|||+.-
T Consensus       169 ~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~-------~gl~~~~~QpEGIa-~d~~G~LYIvsE  240 (248)
T PF06977_consen  169 FVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGF-------HGLSKDIPQPEGIA-FDPDGNLYIVSE  240 (248)
T ss_dssp             -SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTG-------GG-SS---SEEEEE-E-TT--EEEEET
T ss_pred             eeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcc-------cCcccccCCccEEE-ECCCCCEEEEcC
Confidence            356799999998 478999999999999999 67653222211111       01233578899999 688999999997


Q ss_pred             CCCeEEEE
Q 014345          157 GNRAIREI  164 (426)
Q Consensus       157 gN~rIr~I  164 (426)
                      .| +..+|
T Consensus       241 pN-lfy~f  247 (248)
T PF06977_consen  241 PN-LFYRF  247 (248)
T ss_dssp             TT-EEEEE
T ss_pred             Cc-eEEEe
Confidence            54 66655

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=96.81  E-value=0.068  Score=53.48  Aligned_cols=56  Identities=20%  Similarity=0.152  Sum_probs=37.7

Q ss_pred             CeeEEECCCCeEEEEECCCCeEEEEEcCC----Cce---EeecC-CCCcceEEEEecCCceEEEEEE
Q 014345          140 FDVVYIGSSCSLLVIDRGNRAIREIQLHF----DDC---AYQYG-SSFPLGIAVLLAAGFFGYMLAL  198 (426)
Q Consensus       140 ~gIa~vd~~G~LYVaDsgN~rIr~I~l~~----~~~---~~~~~-~g~P~GIAv~~g~g~~Gy~~a~  198 (426)
                      .+++ .|++|+||+++..++.|.+++..+    +..   ..... .-.|.+++++.  -..|++|.+
T Consensus       189 ~g~~-~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~--~~~g~L~v~  252 (287)
T PF03022_consen  189 DGMA-IDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDP--EGDGYLWVL  252 (287)
T ss_dssp             CEEE-EETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T----TS-EEEE
T ss_pred             ceEE-ECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeecc--ccCceEEEE
Confidence            4555 788999999999999999999987    221   22233 46799999985  113566643

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=96.76  E-value=0.1  Score=49.26  Aligned_cols=117  Identities=15%  Similarity=0.257  Sum_probs=72.6

Q ss_pred             CcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCC-EEEEECCCCEEEEEc-C
Q 014345           32 GELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIADTMNMAIRKIS-D  109 (426)
Q Consensus        32 G~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~-LYVADt~N~rIrk~d-~  109 (426)
                      +++|++....+.|.+++.++..  .+..+.+.                 ..|.+++++++|. +|++...++.|++++ .
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~--~~~~~~~~-----------------~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~   61 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLE--VTRTFPVG-----------------QRPRGITLSKDGKLLYVCASDSDTIQVIDLA   61 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCc--eEEEEECC-----------------CCCCceEECCCCCEEEEEECCCCeEEEEECC
Confidence            4688888888889998876421  12222111                 1367899999987 678888888999999 3


Q ss_pred             -CCcE-EEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCC-eEEEEECCCCeEEEEEcCCCceEeecC-CCCcceEEE
Q 014345          110 -SGVT-TIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSC-SLLVIDRGNRAIREIQLHFDDCAYQYG-SSFPLGIAV  185 (426)
Q Consensus       110 -g~Vs-tIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G-~LYVaDsgN~rIr~I~l~~~~~~~~~~-~g~P~GIAv  185 (426)
                       +.+. .+..+                  ..+..++ +++++ .||++....++|+.+++....+..... ...|.++++
T Consensus        62 ~~~~~~~~~~~------------------~~~~~~~-~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~  122 (300)
T TIGR03866        62 TGEVIGTLPSG------------------PDPELFA-LHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAV  122 (300)
T ss_pred             CCcEEEeccCC------------------CCccEEE-ECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEE
Confidence             3332 22110                  0244566 45555 578887777899999987654432222 223566666


Q ss_pred             E
Q 014345          186 L  186 (426)
Q Consensus       186 ~  186 (426)
                      .
T Consensus       123 ~  123 (300)
T TIGR03866       123 S  123 (300)
T ss_pred             C
Confidence            5

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=96.65  E-value=0.075  Score=53.86  Aligned_cols=122  Identities=16%  Similarity=0.172  Sum_probs=78.0

Q ss_pred             CCCceEEEEcCC---CcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEE
Q 014345           20 GIEPYSVEVLPG---GELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYI   96 (426)
Q Consensus        20 ~~~P~GIaVd~d---G~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYV   96 (426)
                      +.-=.|+|+...   ..||.+|..+++|-++|..-.   .+ .+.|...      | ...-+. ..|.+|... .++|||
T Consensus       137 gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~---~~-~~~g~F~------D-P~iPag-yAPFnIqni-g~~lyV  203 (336)
T TIGR03118       137 GNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFR---PP-PLPGSFI------D-PALPAG-YAPFNVQNL-GGTLYV  203 (336)
T ss_pred             cceeeeeEEeecCCCceEEEeccCCCceEEecCccc---cc-cCCCCcc------C-CCCCCC-CCCcceEEE-CCeEEE
Confidence            334468888643   359999999999999977621   12 2233320      0 000011 136677555 478998


Q ss_pred             EE-------------CCCCEEEEEc-CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEE-----CCCCeEEEEEC
Q 014345           97 AD-------------TMNMAIRKIS-DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYI-----GSSCSLLVIDR  156 (426)
Q Consensus        97 AD-------------t~N~rIrk~d-~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~v-----d~~G~LYVaDs  156 (426)
                      +=             .+.+.|-+|+ +|. +..++.               ...|+.||+|+..     .-.|.|+|.+.
T Consensus       204 tYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as---------------~g~LNaPWG~a~APa~FG~~sg~lLVGNF  268 (336)
T TIGR03118       204 TYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVAS---------------SGRLNAPWGLAIAPESFGSLSGALLVGNF  268 (336)
T ss_pred             EEEecCCcccccccCCCcceEEEEcCCCcEEEEecc---------------CCcccCCceeeeChhhhCCCCCCeEEeec
Confidence            83             3345677777 555 444543               2358999999942     23679999999


Q ss_pred             CCCeEEEEEcCCC
Q 014345          157 GNRAIREIQLHFD  169 (426)
Q Consensus       157 gN~rIr~I~l~~~  169 (426)
                      +.++|..+|....
T Consensus       269 GDG~InaFD~~sG  281 (336)
T TIGR03118       269 GDGTINAYDPQSG  281 (336)
T ss_pred             CCceeEEecCCCC
Confidence            9999999998643

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.65  E-value=0.064  Score=52.70  Aligned_cols=83  Identities=13%  Similarity=0.186  Sum_probs=58.4

Q ss_pred             cCCcceEEEcCCC-CEEEEECCCCEEEEEc---CCC-c---EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeE
Q 014345           80 MNHPKGLTVDDRG-NIYIADTMNMAIRKIS---DSG-V---TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSL  151 (426)
Q Consensus        80 Ln~P~GIaVd~dG-~LYVADt~N~rIrk~d---~g~-V---stIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~L  151 (426)
                      +.-|+||+.|.+- .+|+.|+.|..|..++   .++ +   ..|..-....+.        +  =..|-|++ +|.+|+|
T Consensus       157 v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~--------e--~~~PDGm~-ID~eG~L  225 (310)
T KOG4499|consen  157 VGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPF--------E--SLEPDGMT-IDTEGNL  225 (310)
T ss_pred             ccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCc--------C--CCCCCcce-EccCCcE
Confidence            4558999999764 5999999999996655   222 2   223321111111        1  13588998 7999999


Q ss_pred             EEEECCCCeEEEEEcCCCceEe
Q 014345          152 LVIDRGNRAIREIQLHFDDCAY  173 (426)
Q Consensus       152 YVaDsgN~rIr~I~l~~~~~~~  173 (426)
                      ||+-...++|.++++.......
T Consensus       226 ~Va~~ng~~V~~~dp~tGK~L~  247 (310)
T KOG4499|consen  226 YVATFNGGTVQKVDPTTGKILL  247 (310)
T ss_pred             EEEEecCcEEEEECCCCCcEEE
Confidence            9999999999999998765543

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=96.47  E-value=0.15  Score=52.86  Aligned_cols=134  Identities=18%  Similarity=0.202  Sum_probs=73.6

Q ss_pred             ceEEEEcCCCc-EEEEECCCCeEEEEeCCCCcccccEEEe-cCCCCcccccCCcccccccCCcceEEEcCCCC-EEEEEC
Q 014345           23 PYSVEVLPGGE-LLILDSANSNLYRISSSLSLYSRPKLVA-GSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIADT   99 (426)
Q Consensus        23 P~GIaVd~dG~-LYVaD~~n~rI~kid~dg~~~g~v~~va-G~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~-LYVADt   99 (426)
                      +.++++++||. +||+.. .+.|.+||.....  .+..+. |.                  .|.||++++||+ +||++.
T Consensus        39 h~~~~~s~Dgr~~yv~~r-dg~vsviD~~~~~--~v~~i~~G~------------------~~~~i~~s~DG~~~~v~n~   97 (369)
T PF02239_consen   39 HAGLKFSPDGRYLYVANR-DGTVSVIDLATGK--VVATIKVGG------------------NPRGIAVSPDGKYVYVANY   97 (369)
T ss_dssp             EEEEE-TT-SSEEEEEET-TSEEEEEETTSSS--EEEEEE-SS------------------EEEEEEE--TTTEEEEEEE
T ss_pred             eeEEEecCCCCEEEEEcC-CCeEEEEECCccc--EEEEEecCC------------------CcceEEEcCCCCEEEEEec
Confidence            45577889997 899975 6799999997532  222221 22                  389999999997 889999


Q ss_pred             CCCEEEEEcCCC---cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCce---Ee
Q 014345          100 MNMAIRKISDSG---VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDC---AY  173 (426)
Q Consensus       100 ~N~rIrk~d~g~---VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~---~~  173 (426)
                      ..+.+.++|..+   +.+|..+....     ++     .-+.+.+|...+.....+|+-...+.|..++......   ..
T Consensus        98 ~~~~v~v~D~~tle~v~~I~~~~~~~-----~~-----~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~  167 (369)
T PF02239_consen   98 EPGTVSVIDAETLEPVKTIPTGGMPV-----DG-----PESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTT  167 (369)
T ss_dssp             ETTEEEEEETTT--EEEEEE--EE-T-----TT-----S---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEE
T ss_pred             CCCceeEeccccccceeecccccccc-----cc-----cCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceee
Confidence            999999999433   45554321111     00     1123345543233334455556667777777544221   12


Q ss_pred             ecCCCCcceEEEEe
Q 014345          174 QYGSSFPLGIAVLL  187 (426)
Q Consensus       174 ~~~~g~P~GIAv~~  187 (426)
                      .....+|.+..++.
T Consensus       168 i~~g~~~~D~~~dp  181 (369)
T PF02239_consen  168 IKVGRFPHDGGFDP  181 (369)
T ss_dssp             EE--TTEEEEEE-T
T ss_pred             ecccccccccccCc
Confidence            22334577766664

...

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.31  E-value=0.041  Score=54.03  Aligned_cols=81  Identities=20%  Similarity=0.280  Sum_probs=57.8

Q ss_pred             CceEEEEcCCC-cEEEEECCCCeEEEEe--CCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEE
Q 014345           22 EPYSVEVLPGG-ELLILDSANSNLYRIS--SSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIAD   98 (426)
Q Consensus        22 ~P~GIaVd~dG-~LYVaD~~n~rI~kid--~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVAD   98 (426)
                      -|+||+.|.+- .+|+.|+-|..|..++  ..++...+...+..-....       ..+  --.|.|+|+|.+|+||||-
T Consensus       159 IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~-------~~e--~~~PDGm~ID~eG~L~Va~  229 (310)
T KOG4499|consen  159 ISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQ-------PFE--SLEPDGMTIDTEGNLYVAT  229 (310)
T ss_pred             CCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCC-------CcC--CCCCCcceEccCCcEEEEE
Confidence            58999999864 4999999999995555  5554445555554321100       001  1248999999999999999


Q ss_pred             CCCCEEEEEc--CCC
Q 014345           99 TMNMAIRKIS--DSG  111 (426)
Q Consensus        99 t~N~rIrk~d--~g~  111 (426)
                      ....+|.++|  .|.
T Consensus       230 ~ng~~V~~~dp~tGK  244 (310)
T KOG4499|consen  230 FNGGTVQKVDPTTGK  244 (310)
T ss_pred             ecCcEEEEECCCCCc
Confidence            9999999999  454

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=96.28  E-value=0.17  Score=52.29  Aligned_cols=111  Identities=15%  Similarity=0.130  Sum_probs=72.8

Q ss_pred             CcEEEEECC----CCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCC-EEEEEC-------
Q 014345           32 GELLILDSA----NSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIADT-------   99 (426)
Q Consensus        32 G~LYVaD~~----n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~-LYVADt-------   99 (426)
                      ..+||.|..    .++|.+||.+...  .+.++..      |           ..|+++ +++||+ ||||.+       
T Consensus        13 ~~v~V~d~~~~~~~~~v~ViD~~~~~--v~g~i~~------G-----------~~P~~~-~spDg~~lyva~~~~~R~~~   72 (352)
T TIGR02658        13 RRVYVLDPGHFAATTQVYTIDGEAGR--VLGMTDG------G-----------FLPNPV-VASDGSFFAHASTVYSRIAR   72 (352)
T ss_pred             CEEEEECCcccccCceEEEEECCCCE--EEEEEEc------c-----------CCCcee-ECCCCCEEEEEecccccccc
Confidence            359999976    3899999987421  1122211      1           148887 888875 999999       


Q ss_pred             --CCCEEEEEcCCCc---EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCC-eEEEEECC-CCeEEEEEcCCCceE
Q 014345          100 --MNMAIRKISDSGV---TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSC-SLLVIDRG-NRAIREIQLHFDDCA  172 (426)
Q Consensus       100 --~N~rIrk~d~g~V---stIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G-~LYVaDsg-N~rIr~I~l~~~~~~  172 (426)
                        ..+.|.++|....   ..|.-+..          ........|..+++ .++| .|||++.. .+.|-+||+......
T Consensus        73 G~~~d~V~v~D~~t~~~~~~i~~p~~----------p~~~~~~~~~~~~l-s~dgk~l~V~n~~p~~~V~VvD~~~~kvv  141 (352)
T TIGR02658        73 GKRTDYVEVIDPQTHLPIADIELPEG----------PRFLVGTYPWMTSL-TPDNKTLLFYQFSPSPAVGVVDLEGKAFV  141 (352)
T ss_pred             CCCCCEEEEEECccCcEEeEEccCCC----------chhhccCccceEEE-CCCCCEEEEecCCCCCEEEEEECCCCcEE
Confidence              7899999994332   23321110          01112456778884 5565 79999966 899999999876554


Q ss_pred             e
Q 014345          173 Y  173 (426)
Q Consensus       173 ~  173 (426)
                      .
T Consensus       142 ~  142 (352)
T TIGR02658       142 R  142 (352)
T ss_pred             E
Confidence            3

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=96.20  E-value=0.029  Score=57.02  Aligned_cols=121  Identities=28%  Similarity=0.462  Sum_probs=69.3

Q ss_pred             CceEEEEcCC-CcEEEEECCCC---eEEEEeCCCCcccccEEEecCCCCcccc------c-CCc-ccccc---cCCcceE
Q 014345           22 EPYSVEVLPG-GELLILDSANS---NLYRISSSLSLYSRPKLVAGSAEGYSGH------V-DGK-PREAR---MNHPKGL   86 (426)
Q Consensus        22 ~P~GIaVd~d-G~LYVaD~~n~---rI~kid~dg~~~g~v~~vaG~~~G~~G~------~-dG~-a~~A~---Ln~P~GI   86 (426)
                      +|.++++++. |+||++|.+..   .|.++.. |..+|=.....+..  ..|.      . .+. .....   =..|.|+
T Consensus       182 N~~~~~~d~~tg~l~~~d~G~~~~dein~i~~-G~nYGWP~~~~~~~--~~~~~~~~~~~~~~~~~P~~~~~~~~ap~G~  258 (331)
T PF07995_consen  182 NPFGLAFDPNTGRLWAADNGPDGWDEINRIEP-GGNYGWPYCEGGPK--YSGPPIGDAPSCPGFVPPVFAYPPHSAPTGI  258 (331)
T ss_dssp             EEEEEEEETTTTEEEEEEE-SSSSEEEEEE-T-T-B--TTTBSSSCS--TTSS-ECTGSS-TTS---SEEETTT--EEEE
T ss_pred             ccccEEEECCCCcEEEEccCCCCCcEEEEecc-CCcCCCCCCcCCCC--CCCCccccccCCCCcCccceeecCccccCce
Confidence            7999999997 99999996553   4555543 22212111111110  0000      0 000 00001   1468898


Q ss_pred             EEcC-------CCCEEEEECCCCEEEEEc-C-CC-c---EEEeCCccCCCCCCCCCCcccccCC-CCCeeEEECCCCeEE
Q 014345           87 TVDD-------RGNIYIADTMNMAIRKIS-D-SG-V---TTIAGGKWGRGGGHVDGPSEDAKFS-NDFDVVYIGSSCSLL  152 (426)
Q Consensus        87 aVd~-------dG~LYVADt~N~rIrk~d-~-g~-V---stIaGg~~g~~~G~~dG~~~~a~f~-~P~gIa~vd~~G~LY  152 (426)
                      ++-.       .|.++|+|....+|+.+. + ++ +   ..+++                 .+. .|.+|+ .+++|.||
T Consensus       259 ~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-----------------~~~~r~~~v~-~~pDG~Ly  320 (331)
T PF07995_consen  259 IFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLG-----------------GFGGRPRDVA-QGPDGALY  320 (331)
T ss_dssp             EEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECT-----------------TSSS-EEEEE-EETTSEEE
T ss_pred             EEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccc-----------------cCCCCceEEE-EcCCCeEE
Confidence            8873       467999999999999888 3 32 2   22221                 122 688998 78999999


Q ss_pred             EEECCCCeEEE
Q 014345          153 VIDRGNRAIRE  163 (426)
Q Consensus       153 VaDsgN~rIr~  163 (426)
                      |+|-.+++|+|
T Consensus       321 v~~d~~G~iyR  331 (331)
T PF07995_consen  321 VSDDSDGKIYR  331 (331)
T ss_dssp             EEE-TTTTEEE
T ss_pred             EEECCCCeEeC
Confidence            99988898875

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=95.98  E-value=0.21  Score=50.66  Aligned_cols=133  Identities=20%  Similarity=0.252  Sum_probs=74.0

Q ss_pred             CceEEEEcCCCcEEEEECCC------CeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCC-E
Q 014345           22 EPYSVEVLPGGELLILDSAN------SNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-I   94 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n------~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~-L   94 (426)
                      .+.||++.++|.+||++-..      ++|++++.+|.....+.+-..-.....+. .+...   =....|||+.++|. |
T Consensus        86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~-~~~~~---N~G~E~la~~~dG~~l  161 (326)
T PF13449_consen   86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGT-SGRRN---NRGFEGLAVSPDGRTL  161 (326)
T ss_pred             ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCcc-ccccC---CCCeEEEEECCCCCEE
Confidence            78899998899999999999      99999999864321111101000000000 00000   11357999999998 8


Q ss_pred             EEEECC---------------CCEEEEEcCC--C--cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEE
Q 014345           95 YIADTM---------------NMAIRKISDS--G--VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVID  155 (426)
Q Consensus        95 YVADt~---------------N~rIrk~d~g--~--VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD  155 (426)
                      |++--.               ..||..++..  +  +...+-...        .......-..+.++++ -+++.|+|.+
T Consensus       162 ~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld--------~~~~~~~~~~isd~~a-l~d~~lLvLE  232 (326)
T PF13449_consen  162 FAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLD--------PPPTAPGDNGISDIAA-LPDGRLLVLE  232 (326)
T ss_pred             EEEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCC--------ccccccCCCCceeEEE-ECCCcEEEEE
Confidence            877422               1456666621  2  211111000        0000002345778885 4567899999


Q ss_pred             CC-------CCeEEEEEcC
Q 014345          156 RG-------NRAIREIQLH  167 (426)
Q Consensus       156 sg-------N~rIr~I~l~  167 (426)
                      +.       ..+|+++++.
T Consensus       233 R~~~~~~~~~~ri~~v~l~  251 (326)
T PF13449_consen  233 RDFSPGTGNYKRIYRVDLS  251 (326)
T ss_pred             ccCCCCccceEEEEEEEcc
Confidence            87       3456666654

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=95.69  E-value=0.47  Score=49.08  Aligned_cols=68  Identities=9%  Similarity=0.094  Sum_probs=46.6

Q ss_pred             EEEcCCC-CEEEEE-C--------CCCEEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCC-eE
Q 014345           86 LTVDDRG-NIYIAD-T--------MNMAIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSC-SL  151 (426)
Q Consensus        86 IaVd~dG-~LYVAD-t--------~N~rIrk~d--~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G-~L  151 (426)
                      ++++++| .+||+. .        ..+.|.++|  .+. +.++.-+                  ..|++|++..+.. .|
T Consensus       253 ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG------------------~~~~~iavS~Dgkp~l  314 (352)
T TIGR02658       253 VAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG------------------HEIDSINVSQDAKPLL  314 (352)
T ss_pred             EEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCC------------------CceeeEEECCCCCeEE
Confidence            9999875 599953 2        236899999  333 3444321                  1588999544344 68


Q ss_pred             EEEECCCCeEEEEEcCCCce
Q 014345          152 LVIDRGNRAIREIQLHFDDC  171 (426)
Q Consensus       152 YVaDsgN~rIr~I~l~~~~~  171 (426)
                      |+++..++.|.+||......
T Consensus       315 yvtn~~s~~VsViD~~t~k~  334 (352)
T TIGR02658       315 YALSTGDKTLYIFDAETGKE  334 (352)
T ss_pred             EEeCCCCCcEEEEECcCCeE
Confidence            88998899999999876443

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=95.35  E-value=1.1  Score=45.75  Aligned_cols=160  Identities=11%  Similarity=0.055  Sum_probs=81.9

Q ss_pred             CCCceEEEEcCCCcEEEEECCCCeEEEEeCC-----CCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCE
Q 014345           20 GIEPYSVEVLPGGELLILDSANSNLYRISSS-----LSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNI   94 (426)
Q Consensus        20 ~~~P~GIaVd~dG~LYVaD~~n~rI~kid~d-----g~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~L   94 (426)
                      +.+|+||++.|.|-+||+|.+.+....++.+     +..  . .+++..+ ...+.       +.-..|+|+.+......
T Consensus        22 L~N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~--~-~L~vtiP-~~~~~-------~~~~~PTGiVfN~~~~F   90 (336)
T TIGR03118        22 LRNAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQ--D-PLVVVIP-APPPL-------AAEGTPTGQVFNGSDTF   90 (336)
T ss_pred             ccccceeEecCCCCEEEecCCcceEEeecCCcccccCCc--c-ceEEEec-CCCCC-------CCCCCccEEEEeCCCce
Confidence            3489999999999999999999999988877     322  1 2222211 00110       01224888888865444


Q ss_pred             EEEECCC---CEEEEEc-CCCcEEEeCCccCC----CCC-CCCCCcccccCCCCCeeEEEC--CCCeEEEEECCCCeEEE
Q 014345           95 YIADTMN---MAIRKIS-DSGVTTIAGGKWGR----GGG-HVDGPSEDAKFSNDFDVVYIG--SSCSLLVIDRGNRAIRE  163 (426)
Q Consensus        95 YVADt~N---~rIrk~d-~g~VstIaGg~~g~----~~G-~~dG~~~~a~f~~P~gIa~vd--~~G~LYVaDsgN~rIr~  163 (426)
                      -|+....   .+..... +|+++-......-.    ..- .+.+. ..+-+   .++|+..  ..+.||.+|..+++|.+
T Consensus        91 ~vt~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~-~gavY---kGLAi~~~~~~~~LYaadF~~g~IDV  166 (336)
T TIGR03118        91 VVSGEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQ-QGNVY---KGLAVGPTGGGDYLYAANFRQGRIDV  166 (336)
T ss_pred             EEcCCCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCC-Cccee---eeeEEeecCCCceEEEeccCCCceEE
Confidence            3443221   1111111 44443333210000    000 00000 00111   3455321  24689999999999999


Q ss_pred             EEcCCCceEeec--------CCCCcceEEEEecCCceEE
Q 014345          164 IQLHFDDCAYQY--------GSSFPLGIAVLLAAGFFGY  194 (426)
Q Consensus       164 I~l~~~~~~~~~--------~~g~P~GIAv~~g~g~~Gy  194 (426)
                      ++..........        ..-.|.+|..+.+..++-|
T Consensus       167 Fd~~f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtY  205 (336)
T TIGR03118       167 FKGSFRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTY  205 (336)
T ss_pred             ecCccccccCCCCccCCCCCCCCCCcceEEECCeEEEEE
Confidence            987654433221        1124677877655444444

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=95.15  E-value=0.15  Score=42.41  Aligned_cols=29  Identities=14%  Similarity=0.443  Sum_probs=26.2

Q ss_pred             cCCcceEEEcCCCC-EEEEECCCCEEEEEc
Q 014345           80 MNHPKGLTVDDRGN-IYIADTMNMAIRKIS  108 (426)
Q Consensus        80 Ln~P~GIaVd~dG~-LYVADt~N~rIrk~d  108 (426)
                      |..|+||+++++++ ||||+...+.|+++.
T Consensus        53 ~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~   82 (86)
T PF01731_consen   53 FSFANGIAISPDKKYLYVASSLAHSIHVYK   82 (86)
T ss_pred             CCCCceEEEcCCCCEEEEEeccCCeEEEEE
Confidence            88899999999765 999999999999876

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=95.04  E-value=0.5  Score=50.06  Aligned_cols=114  Identities=17%  Similarity=0.157  Sum_probs=80.7

Q ss_pred             CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCC
Q 014345           22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN  101 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N  101 (426)
                      .-.++++.++|.+.++-+....|+.++.... .-.++++.|.                .+.-+.+++.++|+++++=...
T Consensus       205 ~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~-~~~~~~l~gH----------------~~~v~~~~f~p~g~~i~Sgs~D  267 (456)
T KOG0266|consen  205 GVSDVAFSPDGSYLLSGSDDKTLRIWDLKDD-GRNLKTLKGH----------------STYVTSVAFSPDGNLLVSGSDD  267 (456)
T ss_pred             ceeeeEECCCCcEEEEecCCceEEEeeccCC-CeEEEEecCC----------------CCceEEEEecCCCCEEEEecCC
Confidence            4678999999998888888888888888311 0234555554                2234789999999999998889


Q ss_pred             CEEEEEc-C-CC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCc
Q 014345          102 MAIRKIS-D-SG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDD  170 (426)
Q Consensus       102 ~rIrk~d-~-g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~  170 (426)
                      +.|+.++ . +. +.++.+-..                 .-.+++ +..+++++++-...+.|+.++.....
T Consensus       268 ~tvriWd~~~~~~~~~l~~hs~-----------------~is~~~-f~~d~~~l~s~s~d~~i~vwd~~~~~  321 (456)
T KOG0266|consen  268 GTVRIWDVRTGECVRKLKGHSD-----------------GISGLA-FSPDGNLLVSASYDGTIRVWDLETGS  321 (456)
T ss_pred             CcEEEEeccCCeEEEeeeccCC-----------------ceEEEE-ECCCCCEEEEcCCCccEEEEECCCCc
Confidence            9999999 3 33 345544211                 123455 57777777777778888888888766

>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=94.96  E-value=0.086  Score=37.67  Aligned_cols=41  Identities=24%  Similarity=0.395  Sum_probs=32.7

Q ss_pred             CcEEEEECCCC-eEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcC
Q 014345           32 GELLILDSANS-NLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD   90 (426)
Q Consensus        32 G~LYVaD~~n~-rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~   90 (426)
                      |.||-+|...+ .|.+.+.+|+   ..++++..               .+.+|.|||||.
T Consensus         1 ~~iYWtD~~~~~~I~~a~~dGs---~~~~vi~~---------------~l~~P~giaVD~   42 (42)
T PF00058_consen    1 GKIYWTDWSQDPSIERANLDGS---NRRTVISD---------------DLQHPEGIAVDW   42 (42)
T ss_dssp             TEEEEEETTTTEEEEEEETTST---SEEEEEES---------------STSSEEEEEEET
T ss_pred             CEEEEEECCCCcEEEEEECCCC---CeEEEEEC---------------CCCCcCEEEECC
Confidence            57999999999 9999999974   34555533               188999999984

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.88  E-value=0.098  Score=52.72  Aligned_cols=70  Identities=24%  Similarity=0.419  Sum_probs=51.4

Q ss_pred             CceEEEEcC-CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECC
Q 014345           22 EPYSVEVLP-GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTM  100 (426)
Q Consensus        22 ~P~GIaVd~-dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~  100 (426)
                      .-.|+.+++ .|+|+|.....++++.++.+|...+.+.+..|.    .|      .....-++.|||+|++|+|||+---
T Consensus       234 DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~----~g------L~~dipqaEGiamDd~g~lYIvSEP  303 (316)
T COG3204         234 DVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGN----HG------LSSDIPQAEGIAMDDDGNLYIVSEP  303 (316)
T ss_pred             ccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCC----CC------CcccCCCcceeEECCCCCEEEEecC
Confidence            345777876 678999988999999999997654455554443    22      1223667899999999999998764


Q ss_pred             C
Q 014345          101 N  101 (426)
Q Consensus       101 N  101 (426)
                      |
T Consensus       304 n  304 (316)
T COG3204         304 N  304 (316)
T ss_pred             C
Confidence            4

>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]

Probab=94.78  E-value=0.62  Score=49.02  Aligned_cols=132  Identities=19%  Similarity=0.279  Sum_probs=75.7

Q ss_pred             CceEEEEcC-CCcEEEEECCCCeE-----EEEeCCCCcccccEEEecCC-CCcccccCCccccccc----------CCcc
Q 014345           22 EPYSVEVLP-GGELLILDSANSNL-----YRISSSLSLYSRPKLVAGSA-EGYSGHVDGKPREARM----------NHPK   84 (426)
Q Consensus        22 ~P~GIaVd~-dG~LYVaD~~n~rI-----~kid~dg~~~g~v~~vaG~~-~G~~G~~dG~a~~A~L----------n~P~   84 (426)
                      +|.|++.++ +|.||++|.+...+     +-.-..|..+|=+....|.- .+.... ++. ..+.+          --|.
T Consensus       240 N~qGl~w~P~tg~Lw~~e~g~d~~~~~Deln~i~~G~nYGWP~~~~G~~~~g~~~~-~~~-~~~~~~~p~~~~~~h~Aps  317 (399)
T COG2133         240 NPQGLAWHPVTGALWTTEHGPDALRGPDELNSIRPGKNYGWPYAYFGQNYDGRAIP-DGT-VVAGAIQPVYTWAPHIAPS  317 (399)
T ss_pred             CccceeecCCCCcEEEEecCCCcccCcccccccccCCccCCceeccCcccCccccC-CCc-ccccccCCceeeccccccc
Confidence            799999999 59999999766333     11112333333333333321 111000 111 11111          2368


Q ss_pred             eEEEcCC-------CCEEEEECCCCEEEEEc-CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEEC
Q 014345           85 GLTVDDR-------GNIYIADTMNMAIRKIS-DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDR  156 (426)
Q Consensus        85 GIaVd~d-------G~LYVADt~N~rIrk~d-~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDs  156 (426)
                      ||+|-..       +.++|+--+.-.+...+ ++....+..+...   +  +.      --+|.+|+ +.++|.|||+|-
T Consensus       318 GmaFy~G~~fP~~r~~lfV~~hgsw~~~~~~~~g~~~~~~~~fl~---~--d~------~gR~~dV~-v~~DGallv~~D  385 (399)
T COG2133         318 GMAFYTGDLFPAYRGDLFVGAHGSWPVLRLRPDGNYKVVLTGFLS---G--DL------GGRPRDVA-VAPDGALLVLTD  385 (399)
T ss_pred             eeEEecCCcCccccCcEEEEeecceeEEEeccCCCcceEEEEEEe---c--CC------CCcccceE-ECCCCeEEEeec
Confidence            9999843       68999987766566666 5553222221000   0  00      03789998 899999999887


Q ss_pred             C-CCeEEEEEcC
Q 014345          157 G-NRAIREIQLH  167 (426)
Q Consensus       157 g-N~rIr~I~l~  167 (426)
                      . +++|.++...
T Consensus       386 ~~~g~i~Rv~~~  397 (399)
T COG2133         386 QGDGRILRVSYA  397 (399)
T ss_pred             CCCCeEEEecCC
Confidence            6 7799999764

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=94.69  E-value=0.11  Score=51.98  Aligned_cols=64  Identities=16%  Similarity=0.323  Sum_probs=48.0

Q ss_pred             CceEEEEcCCCcEEEEECCCCeEEEEeCCCCccc-ccEEEecCCCCcccccCCcccccccCCcceEEEcC--CCCEEEEE
Q 014345           22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYS-RPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD--RGNIYIAD   98 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g-~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~--dG~LYVAD   98 (426)
                      .-.|+++|++|+||+++..++.|.++++++.+.. ...+++-..             ..|..|.++.++.  +|.|||.-
T Consensus       187 ~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~-------------~~l~~pd~~~i~~~~~g~L~v~s  253 (287)
T PF03022_consen  187 QSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDP-------------RTLQWPDGLKIDPEGDGYLWVLS  253 (287)
T ss_dssp             SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-C-------------C-GSSEEEEEE-T--TS-EEEEE
T ss_pred             CCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcC-------------ceeeccceeeeccccCceEEEEE
Confidence            3579999999999999999999999999853311 345555321             1288999999999  99999986

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=94.35  E-value=1.5  Score=45.47  Aligned_cols=123  Identities=17%  Similarity=0.187  Sum_probs=71.5

Q ss_pred             CCceEEEEcCCCc-EEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEE-E
Q 014345           21 IEPYSVEVLPGGE-LLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIA-D   98 (426)
Q Consensus        21 ~~P~GIaVd~dG~-LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVA-D   98 (426)
                      ..|.|+++++||. |||+....+.|..+|..+-  ..+..+...  +..+  ++     .-..+.+|...+....||. -
T Consensus        78 ~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tl--e~v~~I~~~--~~~~--~~-----~~~Rv~aIv~s~~~~~fVv~l  146 (369)
T PF02239_consen   78 GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETL--EPVKTIPTG--GMPV--DG-----PESRVAAIVASPGRPEFVVNL  146 (369)
T ss_dssp             SEEEEEEE--TTTEEEEEEEETTEEEEEETTT----EEEEEE----EE-T--TT-----S---EEEEEE-SSSSEEEEEE
T ss_pred             CCcceEEEcCCCCEEEEEecCCCceeEeccccc--cceeecccc--cccc--cc-----cCCCceeEEecCCCCEEEEEE
Confidence            4699999999998 8889989999999997641  123333211  1111  00     1122456766676665554 4


Q ss_pred             CCCCEEEEEc--CCC-c--EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCe-EEEEECCCCeEEEEEcCCCceE
Q 014345           99 TMNMAIRKIS--DSG-V--TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCS-LLVIDRGNRAIREIQLHFDDCA  172 (426)
Q Consensus        99 t~N~rIrk~d--~g~-V--stIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~-LYVaDsgN~rIr~I~l~~~~~~  172 (426)
                      .....|+.+|  +.. .  .++.-+                  ..|++.. ++++++ ++++-...+.|..++.......
T Consensus       147 kd~~~I~vVdy~d~~~~~~~~i~~g------------------~~~~D~~-~dpdgry~~va~~~sn~i~viD~~~~k~v  207 (369)
T PF02239_consen  147 KDTGEIWVVDYSDPKNLKVTTIKVG------------------RFPHDGG-FDPDGRYFLVAANGSNKIAVIDTKTGKLV  207 (369)
T ss_dssp             TTTTEEEEEETTTSSCEEEEEEE--------------------TTEEEEE-E-TTSSEEEEEEGGGTEEEEEETTTTEEE
T ss_pred             ccCCeEEEEEeccccccceeeeccc------------------ccccccc-cCcccceeeecccccceeEEEeeccceEE
Confidence            5568899888  222 1  222111                  2578887 577774 6777777889999998775544


Q ss_pred             e
Q 014345          173 Y  173 (426)
Q Consensus       173 ~  173 (426)
                      .
T Consensus       208 ~  208 (369)
T PF02239_consen  208 A  208 (369)
T ss_dssp             E
T ss_pred             E
Confidence            3

...

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=94.29  E-value=0.34  Score=51.79  Aligned_cols=80  Identities=11%  Similarity=0.119  Sum_probs=52.8

Q ss_pred             cCCcceEEEcCCCCEEEEECCCCEEEEEcC-CC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEE------CCCCeE
Q 014345           80 MNHPKGLTVDDRGNIYIADTMNMAIRKISD-SG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYI------GSSCSL  151 (426)
Q Consensus        80 Ln~P~GIaVd~dG~LYVADt~N~rIrk~d~-g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~v------d~~G~L  151 (426)
                      |.+|++|++.++|+|||+....++|++++. ++ ...+.+...-.         .......+.+|++.      ..++.|
T Consensus        29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~---------~~~ge~GLlglal~PdF~~~~~n~~l   99 (454)
T TIGR03606        29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIV---------NDAQHNGLLGLALHPDFMQEKGNPYV   99 (454)
T ss_pred             CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCcee---------ccCCCCceeeEEECCCccccCCCcEE
Confidence            889999999999999999987789999983 33 33333321100         00113456788853      234579


Q ss_pred             EEEEC---------CCCeEEEEEcCC
Q 014345          152 LVIDR---------GNRAIREIQLHF  168 (426)
Q Consensus       152 YVaDs---------gN~rIr~I~l~~  168 (426)
                      ||+-+         ...+|.++.+..
T Consensus       100 Yvsyt~~~~~~~~~~~~~I~R~~l~~  125 (454)
T TIGR03606       100 YISYTYKNGDKELPNHTKIVRYTYDK  125 (454)
T ss_pred             EEEEeccCCCCCccCCcEEEEEEecC
Confidence            99842         146888888753

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=93.98  E-value=1.2  Score=45.65  Aligned_cols=141  Identities=18%  Similarity=0.189  Sum_probs=83.6

Q ss_pred             CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCC
Q 014345           22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN  101 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N  101 (426)
                      .-+.|++ .++.+|++.+.=+++-.++..-++.-..+.     .+.+    .. ....=.|-+|+|+....--||+-.+.
T Consensus       104 diHdia~-~~~~l~fVNT~fSCLatl~~~~SF~P~WkP-----pFIs----~l-a~eDRCHLNGlA~~~g~p~yVTa~~~  172 (335)
T TIGR03032       104 DAHDLAL-GAGRLLFVNTLFSCLATVSPDYSFVPLWKP-----PFIS----KL-APEDRCHLNGMALDDGEPRYVTALSQ  172 (335)
T ss_pred             chhheee-cCCcEEEEECcceeEEEECCCCccccccCC-----cccc----cc-CccCceeecceeeeCCeEEEEEEeec
Confidence            4688888 577899999888899898887554222111     0111    11 01113567899998544477764321


Q ss_pred             C---EEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcC-CCceEee
Q 014345          102 M---AIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLH-FDDCAYQ  174 (426)
Q Consensus       102 ~---rIrk~d--~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~-~~~~~~~  174 (426)
                      .   .=++-.  +|+ +.-+..+           ......|+.|++-.+  -+|.|||+|++.+.|.+++++ +......
T Consensus       173 sD~~~gWR~~~~~gG~vidv~s~-----------evl~~GLsmPhSPRW--hdgrLwvldsgtGev~~vD~~~G~~e~Va  239 (335)
T TIGR03032       173 SDVADGWREGRRDGGCVIDIPSG-----------EVVASGLSMPHSPRW--YQGKLWLLNSGRGELGYVDPQAGKFQPVA  239 (335)
T ss_pred             cCCcccccccccCCeEEEEeCCC-----------CEEEcCccCCcCCcE--eCCeEEEEECCCCEEEEEcCCCCcEEEEE
Confidence            1   111111  233 2222211           112234778888886  359999999999999999987 4333334


Q ss_pred             cCCCCcceEEEE
Q 014345          175 YGSSFPLGIAVL  186 (426)
Q Consensus       175 ~~~g~P~GIAv~  186 (426)
                      .-.|+|.|++..
T Consensus       240 ~vpG~~rGL~f~  251 (335)
T TIGR03032       240 FLPGFTRGLAFA  251 (335)
T ss_pred             ECCCCCccccee
Confidence            444678888877

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=93.36  E-value=6.9  Score=39.09  Aligned_cols=132  Identities=20%  Similarity=0.205  Sum_probs=79.3

Q ss_pred             ecCCcEEEEEecCCCCCCCceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCc
Q 014345            4 FESGYTVETVFDGSKLGIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHP   83 (426)
Q Consensus         4 ~~~G~tv~tv~~g~~l~~~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P   83 (426)
                      ++.|.....+.-...++  -.||++- ++.||..-..++..+++|.+. + ..+..+.     +.|            .-
T Consensus        75 ~~tg~~~~~~~l~~~~F--gEGit~~-~d~l~qLTWk~~~~f~yd~~t-l-~~~~~~~-----y~~------------EG  132 (264)
T PF05096_consen   75 LETGKVLQSVPLPPRYF--GEGITIL-GDKLYQLTWKEGTGFVYDPNT-L-KKIGTFP-----YPG------------EG  132 (264)
T ss_dssp             TTTSSEEEEEE-TTT----EEEEEEE-TTEEEEEESSSSEEEEEETTT-T-EEEEEEE------SS------------S-
T ss_pred             CCCCcEEEEEECCcccc--ceeEEEE-CCEEEEEEecCCeEEEEcccc-c-eEEEEEe-----cCC------------cc
Confidence            34455444443333333  5899997 468999999999999999973 1 1222221     111            24


Q ss_pred             ceEEEcCCCCEEEEECCCCEEEEEcCCC---cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCe
Q 014345           84 KGLTVDDRGNIYIADTMNMAIRKISDSG---VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRA  160 (426)
Q Consensus        84 ~GIaVd~dG~LYVADt~N~rIrk~d~g~---VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~r  160 (426)
                      +|||.|. ..||++|. ..+|+.+|...   +.++.-...+.            ....-+.|-++  +|.||---+..++
T Consensus       133 WGLt~dg-~~Li~SDG-S~~L~~~dP~~f~~~~~i~V~~~g~------------pv~~LNELE~i--~G~IyANVW~td~  196 (264)
T PF05096_consen  133 WGLTSDG-KRLIMSDG-SSRLYFLDPETFKEVRTIQVTDNGR------------PVSNLNELEYI--NGKIYANVWQTDR  196 (264)
T ss_dssp             -EEEECS-SCEEEE-S-SSEEEEE-TTT-SEEEEEE-EETTE------------E---EEEEEEE--TTEEEEEETTSSE
T ss_pred             eEEEcCC-CEEEEECC-ccceEEECCcccceEEEEEEEECCE------------ECCCcEeEEEE--cCEEEEEeCCCCe
Confidence            8999774 47999997 68999999433   23332211111            12344667776  5899999999999


Q ss_pred             EEEEEcCCCceEe
Q 014345          161 IREIQLHFDDCAY  173 (426)
Q Consensus       161 Ir~I~l~~~~~~~  173 (426)
                      |.+|++..+.+.-
T Consensus       197 I~~Idp~tG~V~~  209 (264)
T PF05096_consen  197 IVRIDPETGKVVG  209 (264)
T ss_dssp             EEEEETTT-BEEE
T ss_pred             EEEEeCCCCeEEE
Confidence            9999999877643

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=93.32  E-value=1.9  Score=43.61  Aligned_cols=95  Identities=21%  Similarity=0.365  Sum_probs=53.0

Q ss_pred             ecCCCCCCCceEEEEcC-CCcEE-EEECCC----CeEEEEeCCCC--cccccEEEecCCCCcccccCCcccccccCCcce
Q 014345           14 FDGSKLGIEPYSVEVLP-GGELL-ILDSAN----SNLYRISSSLS--LYSRPKLVAGSAEGYSGHVDGKPREARMNHPKG   85 (426)
Q Consensus        14 ~~g~~l~~~P~GIaVd~-dG~LY-VaD~~n----~rI~kid~dg~--~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~G   85 (426)
                      +++..++ .-.||+.++ +|.+| |+|.+.    .+++.+..+..  ..+.+.. .+.. -.. ..+|......---+.|
T Consensus        14 ~~~~~~G-GlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~L~-~~~G~~~~~~~~D~Eg   89 (326)
T PF13449_consen   14 FDGIPFG-GLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTI-LDMI-PLR-DPDGQPFPKNGLDPEG   89 (326)
T ss_pred             cCCCccC-cEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEe-ccce-ecc-CCCCCcCCcCCCChhH
Confidence            4455555 568999995 45543 445433    23665554421  1111111 1110 000 1122221111227889


Q ss_pred             EEEcCCCCEEEEECCC------CEEEEEc-CCCc
Q 014345           86 LTVDDRGNIYIADTMN------MAIRKIS-DSGV  112 (426)
Q Consensus        86 IaVd~dG~LYVADt~N------~rIrk~d-~g~V  112 (426)
                      |++.++|.+||++-+.      .+|++++ +|.+
T Consensus        90 i~~~~~g~~~is~E~~~~~~~~p~I~~~~~~G~~  123 (326)
T PF13449_consen   90 IAVPPDGSFWISSEGGRTGGIPPRIRRFDLDGRV  123 (326)
T ss_pred             eEEecCCCEEEEeCCccCCCCCCEEEEECCCCcc
Confidence            9998899999999999      9999999 6654

>COG3211 PhoX Predicted phosphatase [General function prediction only]

Probab=93.31  E-value=0.41  Score=52.07  Aligned_cols=80  Identities=20%  Similarity=0.258  Sum_probs=50.7

Q ss_pred             CCceEEEEcC-CCcEEEEECCCC----------------eEEEEeCCCC----cccccEEEe--cCCCCcccccCCcccc
Q 014345           21 IEPYSVEVLP-GGELLILDSANS----------------NLYRISSSLS----LYSRPKLVA--GSAEGYSGHVDGKPRE   77 (426)
Q Consensus        21 ~~P~GIaVd~-dG~LYVaD~~n~----------------rI~kid~dg~----~~g~v~~va--G~~~G~~G~~dG~a~~   77 (426)
                      .+|.+|++.+ .|++|++.+.|+                +|+|+-+.+.    ...++.+++  |.+.-..+........
T Consensus       417 dRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~~~~~~  496 (616)
T COG3211         417 DRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGASANINA  496 (616)
T ss_pred             cCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCccccccccccCccc
Confidence            4899999998 688999988665                5778766531    112333333  4331111100011122


Q ss_pred             cccCCcceEEEcCCCCEEEEECC
Q 014345           78 ARMNHPKGLTVDDRGNIYIADTM  100 (426)
Q Consensus        78 A~Ln~P~GIaVd~dG~LYVADt~  100 (426)
                      .-|+.|.+|+||+.|+|||+--+
T Consensus       497 ~~f~~PDnl~fD~~GrLWi~TDg  519 (616)
T COG3211         497 NWFNSPDNLAFDPWGRLWIQTDG  519 (616)
T ss_pred             ccccCCCceEECCCCCEEEEecC
Confidence            45999999999999999998643

>PRK02888 nitrous-oxide reductase; Validated

Probab=93.14  E-value=1.3  Score=49.02  Aligned_cols=82  Identities=9%  Similarity=0.110  Sum_probs=54.2

Q ss_pred             CCcceEEEcCCCC-EEEEECCCCEEEEEcCCCcE-EEeCCccCCCCCCCCCCcccccC-CCCCeeEEECCCCeEEEEECC
Q 014345           81 NHPKGLTVDDRGN-IYIADTMNMAIRKISDSGVT-TIAGGKWGRGGGHVDGPSEDAKF-SNDFDVVYIGSSCSLLVIDRG  157 (426)
Q Consensus        81 n~P~GIaVd~dG~-LYVADt~N~rIrk~d~g~Vs-tIaGg~~g~~~G~~dG~~~~a~f-~~P~gIa~vd~~G~LYVaDsg  157 (426)
                      ..|+||++++||. +||+......|.+||-.... .+++...-     .+-...+..+ ..|...+ +|.+|+.|++=.-
T Consensus       321 KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~-----~~~vvaevevGlGPLHTa-FDg~G~aytslf~  394 (635)
T PRK02888        321 KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKP-----RDAVVAEPELGLGPLHTA-FDGRGNAYTTLFL  394 (635)
T ss_pred             CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCc-----cceEEEeeccCCCcceEE-ECCCCCEEEeEee
Confidence            5799999999997 88888888899999933321 12111000     0000000001 3688888 4888999998888


Q ss_pred             CCeEEEEEcCC
Q 014345          158 NRAIREIQLHF  168 (426)
Q Consensus       158 N~rIr~I~l~~  168 (426)
                      ...|.++++..
T Consensus       395 dsqv~kwn~~~  405 (635)
T PRK02888        395 DSQIVKWNIEA  405 (635)
T ss_pred             cceeEEEehHH
Confidence            88999999765

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=93.13  E-value=0.31  Score=40.57  Aligned_cols=43  Identities=16%  Similarity=0.237  Sum_probs=34.6

Q ss_pred             ecCCcEEEEEecCCCCCCCceEEEEcCCCc-EEEEECCCCeEEEEeC
Q 014345            4 FESGYTVETVFDGSKLGIEPYSVEVLPGGE-LLILDSANSNLYRISS   49 (426)
Q Consensus         4 ~~~G~tv~tv~~g~~l~~~P~GIaVd~dG~-LYVaD~~n~rI~kid~   49 (426)
                      +-+|..+..+.++..   .|+||++++++. |||++...+.|.++..
T Consensus        40 yyd~~~~~~va~g~~---~aNGI~~s~~~k~lyVa~~~~~~I~vy~~   83 (86)
T PF01731_consen   40 YYDGKEVKVVASGFS---FANGIAISPDKKYLYVASSLAHSIHVYKR   83 (86)
T ss_pred             EEeCCEeEEeeccCC---CCceEEEcCCCCEEEEEeccCCeEEEEEe
Confidence            345667777777655   899999999765 9999999999988764

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.11  E-value=3.4  Score=41.96  Aligned_cols=30  Identities=23%  Similarity=0.556  Sum_probs=24.8

Q ss_pred             CCceEEEEcCCCcEEEEECCCCeEEEEeCC
Q 014345           21 IEPYSVEVLPGGELLILDSANSNLYRISSS   50 (426)
Q Consensus        21 ~~P~GIaVd~dG~LYVaD~~n~rI~kid~d   50 (426)
                      ..|.+|+.-.+|.+.++|-...+++++..+
T Consensus       129 ~DpE~Ieyig~n~fvi~dER~~~l~~~~vd  158 (316)
T COG3204         129 SDPETIEYIGGNQFVIVDERDRALYLFTVD  158 (316)
T ss_pred             CChhHeEEecCCEEEEEehhcceEEEEEEc
Confidence            389999999888888999888888777554

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=92.98  E-value=2  Score=42.83  Aligned_cols=111  Identities=13%  Similarity=0.116  Sum_probs=70.8

Q ss_pred             CceEEEEcCCCcEEEEEC--CCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEEC
Q 014345           22 EPYSVEVLPGGELLILDS--ANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADT   99 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~--~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt   99 (426)
                      .-.|+.+..+|.||.+--  +.++|++++.++   |++....--+...+              -.||++-. +.||.--.
T Consensus        46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~t---g~~~~~~~l~~~~F--------------gEGit~~~-d~l~qLTW  107 (264)
T PF05096_consen   46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLET---GKVLQSVPLPPRYF--------------GEGITILG-DKLYQLTW  107 (264)
T ss_dssp             EEEEEEEEETTEEEEEECSTTEEEEEEEETTT---SSEEEEEE-TTT----------------EEEEEEET-TEEEEEES
T ss_pred             cCccEEecCCCEEEEeCCCCCcEEEEEEECCC---CcEEEEEECCcccc--------------ceeEEEEC-CEEEEEEe
Confidence            347999977899999875  445899999985   33322221111122              36899984 48999999


Q ss_pred             CCCEEEEEcCCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCC
Q 014345          100 MNMAIRKISDSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHF  168 (426)
Q Consensus       100 ~N~rIrk~d~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~  168 (426)
                      .++...++|......+.--...               ..-|||+ . +...||++| |+.+|+.+++..
T Consensus       108 k~~~~f~yd~~tl~~~~~~~y~---------------~EGWGLt-~-dg~~Li~SD-GS~~L~~~dP~~  158 (264)
T PF05096_consen  108 KEGTGFVYDPNTLKKIGTFPYP---------------GEGWGLT-S-DGKRLIMSD-GSSRLYFLDPET  158 (264)
T ss_dssp             SSSEEEEEETTTTEEEEEEE-S---------------SS--EEE-E-CSSCEEEE--SSSEEEEE-TTT
T ss_pred             cCCeEEEEccccceEEEEEecC---------------CcceEEE-c-CCCEEEEEC-CccceEEECCcc
Confidence            9999999996554333210000               1348888 3 356899999 478999999875

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=92.75  E-value=4.6  Score=42.79  Aligned_cols=127  Identities=20%  Similarity=0.284  Sum_probs=83.7

Q ss_pred             CcEEEEEecCCCCCCCceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceE
Q 014345            7 GYTVETVFDGSKLGIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGL   86 (426)
Q Consensus         7 G~tv~tv~~g~~l~~~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GI   86 (426)
                      +..+.++. |...  ..+++++.++|+++++-...+.|+.++..+..  ....+.+..       ++         -.++
T Consensus       236 ~~~~~~l~-gH~~--~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~--~~~~l~~hs-------~~---------is~~  294 (456)
T KOG0266|consen  236 GRNLKTLK-GHST--YVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGE--CVRKLKGHS-------DG---------ISGL  294 (456)
T ss_pred             CeEEEEec-CCCC--ceEEEEecCCCCEEEEecCCCcEEEEeccCCe--EEEeeeccC-------Cc---------eEEE
Confidence            44445444 4332  46999999999999999899999999887421  223333321       11         3678


Q ss_pred             EEcCCCCEEEEECCCCEEEEEc-CCCc----EEEeCCccCCCCCCCCCCcccccCCCC-CeeEEECCCCeEEEEECCCCe
Q 014345           87 TVDDRGNIYIADTMNMAIRKIS-DSGV----TTIAGGKWGRGGGHVDGPSEDAKFSND-FDVVYIGSSCSLLVIDRGNRA  160 (426)
Q Consensus        87 aVd~dG~LYVADt~N~rIrk~d-~g~V----stIaGg~~g~~~G~~dG~~~~a~f~~P-~gIa~vd~~G~LYVaDsgN~r  160 (426)
                      ++.++|+++++-..++.|+++| ..+.    .++.+...               -. | ..+. ..+++..+++-..++.
T Consensus       295 ~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~---------------~~-~~~~~~-fsp~~~~ll~~~~d~~  357 (456)
T KOG0266|consen  295 AFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAEN---------------SA-PVTSVQ-FSPNGKYLLSASLDRT  357 (456)
T ss_pred             EECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCC---------------CC-ceeEEE-ECCCCcEEEEecCCCe
Confidence            9999999888888899999999 3333    23322110               01 2 3344 6788887777777888


Q ss_pred             EEEEEcCCCce
Q 014345          161 IREIQLHFDDC  171 (426)
Q Consensus       161 Ir~I~l~~~~~  171 (426)
                      |+.+++....+
T Consensus       358 ~~~w~l~~~~~  368 (456)
T KOG0266|consen  358 LKLWDLRSGKS  368 (456)
T ss_pred             EEEEEccCCcc
Confidence            88888775544

>smart00135 LY Low-density lipoprotein-receptor YWTD domain

Probab=92.73  E-value=0.26  Score=33.74  Aligned_cols=30  Identities=17%  Similarity=-0.042  Sum_probs=27.0

Q ss_pred             CceEEEEcCC-CcEEEEECCCCeEEEEeCCC
Q 014345           22 EPYSVEVLPG-GELLILDSANSNLYRISSSL   51 (426)
Q Consensus        22 ~P~GIaVd~d-G~LYVaD~~n~rI~kid~dg   51 (426)
                      .|.|+|+|+. +.||.+|...+.|.+.+.+|
T Consensus        10 ~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g   40 (43)
T smart00135       10 HPNGLAVDWIEGRLYWTDWGLDVIEVANLDG   40 (43)
T ss_pred             CcCEEEEeecCCEEEEEeCCCCEEEEEeCCC
Confidence            7999999995 56999999999999999885

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.

>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function

Probab=92.72  E-value=0.53  Score=51.15  Aligned_cols=80  Identities=23%  Similarity=0.420  Sum_probs=51.6

Q ss_pred             cccCCcceEEEcC-CCCEEEEECCCC-------------------EEEEEc-CCC--------cEE-EeCCccCCCCCCC
Q 014345           78 ARMNHPKGLTVDD-RGNIYIADTMNM-------------------AIRKIS-DSG--------VTT-IAGGKWGRGGGHV  127 (426)
Q Consensus        78 A~Ln~P~GIaVd~-dG~LYVADt~N~-------------------rIrk~d-~g~--------Vst-IaGg~~g~~~G~~  127 (426)
                      ..|+.|.||++++ +|.||||-+.|.                   +|.+++ .+.        +.. +.++.........
T Consensus       347 T~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~  426 (524)
T PF05787_consen  347 TPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNG  426 (524)
T ss_pred             ccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCcccccccc
Confidence            4699999999998 589999988766                   677777 221        222 2222111000111


Q ss_pred             CCCcccccCCCCCeeEEECCCCeEEEEECCC
Q 014345          128 DGPSEDAKFSNDFDVVYIGSSCSLLVIDRGN  158 (426)
Q Consensus       128 dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN  158 (426)
                      ........|+.|-.|+ ++++|+|||+.-++
T Consensus       427 ~~~~~~~~f~sPDNL~-~d~~G~LwI~eD~~  456 (524)
T PF05787_consen  427 SNKCDDNGFASPDNLA-FDPDGNLWIQEDGG  456 (524)
T ss_pred             cCcccCCCcCCCCceE-ECCCCCEEEEeCCC
Confidence            2233456799999999 68899999976433

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=92.52  E-value=5  Score=36.06  Aligned_cols=107  Identities=20%  Similarity=0.193  Sum_probs=62.3

Q ss_pred             CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCC
Q 014345           22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN  101 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N  101 (426)
                      ....+++.++|+.+++-..++.|..++....   .......      ++         -.....+++++++.++++...+
T Consensus       179 ~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~---~~~~~~~------~~---------~~~i~~~~~~~~~~~~~~~~~~  240 (289)
T cd00200         179 EVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG---KCLGTLR------GH---------ENGVNSVAFSPDGYLLASGSED  240 (289)
T ss_pred             ccceEEECCCcCEEEEecCCCcEEEEECCCC---ceecchh------hc---------CCceEEEEEcCCCcEEEEEcCC
Confidence            4567888887754443334777888777531   1111110      00         1245789999988888887777


Q ss_pred             CEEEEEc-C-CC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEE
Q 014345          102 MAIRKIS-D-SG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREI  164 (426)
Q Consensus       102 ~rIrk~d-~-g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I  164 (426)
                      +.|+.++ . +. +..+.+.                 -.....++ +.+++.++++-..++.|+.+
T Consensus       241 ~~i~i~~~~~~~~~~~~~~~-----------------~~~i~~~~-~~~~~~~l~~~~~d~~i~iw  288 (289)
T cd00200         241 GTIRVWDLRTGECVQTLSGH-----------------TNSVTSLA-WSPDGKRLASGSADGTIRIW  288 (289)
T ss_pred             CcEEEEEcCCceeEEEcccc-----------------CCcEEEEE-ECCCCCEEEEecCCCeEEec
Confidence            8898888 3 33 2333210                 01345666 46666666666666777654

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=92.49  E-value=13  Score=37.49  Aligned_cols=90  Identities=18%  Similarity=0.223  Sum_probs=62.4

Q ss_pred             ccCCcceEEEcCCCCEEEEECCCCEEEEEc--CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEE---CCCCeEEE
Q 014345           79 RMNHPKGLTVDDRGNIYIADTMNMAIRKIS--DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYI---GSSCSLLV  153 (426)
Q Consensus        79 ~Ln~P~GIaVd~dG~LYVADt~N~rIrk~d--~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~v---d~~G~LYV  153 (426)
                      .+-|.++|..+.+|++.|+-+..+.|.+|+  +|.|.=..||+.+..+.    . .+..|.+-++..++   +.++.|-|
T Consensus       142 D~~HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~----~-~~~~f~~QHdar~~~~~~~~~~Isl  216 (299)
T PF14269_consen  142 DYFHINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFT----L-PATNFSWQHDARFLNESNDDGTISL  216 (299)
T ss_pred             CccEeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCccc----c-cCCcEeeccCCEEeccCCCCCEEEE
Confidence            467888999999999999999999999999  55566556654221111    1 44567777777765   35677777


Q ss_pred             EEC----------CCCeEEEEEcCCCceEe
Q 014345          154 IDR----------GNRAIREIQLHFDDCAY  173 (426)
Q Consensus       154 aDs----------gN~rIr~I~l~~~~~~~  173 (426)
                      .|-          ..++|..|+.....+..
T Consensus       217 FDN~~~~~~~~~~s~~~v~~ld~~~~~~~~  246 (299)
T PF14269_consen  217 FDNANSDFNGTEPSRGLVLELDPETMTVTL  246 (299)
T ss_pred             EcCCCCCCCCCcCCCceEEEEECCCCEEEE
Confidence            775          34667777776554443

>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]

Probab=92.27  E-value=1.4  Score=50.53  Aligned_cols=133  Identities=16%  Similarity=0.146  Sum_probs=96.0

Q ss_pred             CceEEEEcC-CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcC-CCCEEEEEC
Q 014345           22 EPYSVEVLP-GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD-RGNIYIADT   99 (426)
Q Consensus        22 ~P~GIaVd~-dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~-dG~LYVADt   99 (426)
                      .|.++++|- .+++|.+|..+..|.+.+.++..   ..+++...               +..|..+++++ .|.+|.+|.
T Consensus       481 ~~~~lavD~~~~~~y~tDe~~~~i~v~~~~g~~---~~vl~~~~---------------l~~~r~~~v~p~~g~~~wtd~  542 (877)
T KOG1215|consen  481 IPEGLAVDWIGDNIYWTDEGNCLIEVADLDGSS---RKVLVSKD---------------LDLPRSIAVDPEKGLMFWTDW  542 (877)
T ss_pred             ccCcEEEEeccCCceecccCCceeEEEEccCCc---eeEEEecC---------------CCCccceeeccccCeeEEecC
Confidence            699999998 67899999999999999877532   34444431               46799999998 588999999


Q ss_pred             C-CCEEEEEc-CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCC-eEEEEEcCCCceE--e
Q 014345          100 M-NMAIRKIS-DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNR-AIREIQLHFDDCA--Y  173 (426)
Q Consensus       100 ~-N~rIrk~d-~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~-rIr~I~l~~~~~~--~  173 (426)
                      + ..+|.+-. ++. ..++...                .+.+|+++++.-....+|-+|.... .|..++.++....  .
T Consensus       543 ~~~~~i~ra~~dg~~~~~l~~~----------------~~~~p~glt~d~~~~~~yw~d~~~~~~i~~~~~~g~~r~~~~  606 (877)
T KOG1215|consen  543 GQPPRIERASLDGSERAVLVTN----------------GILWPNGLTIDYETDRLYWADAKLDYTIESANMDGQNRRVVD  606 (877)
T ss_pred             CCCchhhhhcCCCCCceEEEeC----------------CccCCCcceEEeecceeEEEcccCCcceeeeecCCCceEEec
Confidence            7 34566555 444 3333221                1458999997666789999998887 7888888876553  2


Q ss_pred             ecCCCCcceEEEEec
Q 014345          174 QYGSSFPLGIAVLLA  188 (426)
Q Consensus       174 ~~~~g~P~GIAv~~g  188 (426)
                      ......|.++++.-.
T Consensus       607 ~~~~~~p~~~~~~~~  621 (877)
T KOG1215|consen  607 SEDLPHPFGLSVFED  621 (877)
T ss_pred             cccCCCceEEEEecc
Confidence            344456778877644

>smart00135 LY Low-density lipoprotein-receptor YWTD domain

Probab=91.54  E-value=0.59  Score=31.87  Aligned_cols=35  Identities=14%  Similarity=-0.027  Sum_probs=29.7

Q ss_pred             cCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCC
Q 014345          135 KFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFD  169 (426)
Q Consensus       135 ~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~  169 (426)
                      .+..|.+|++....+.||.+|...+.|.+.+.++.
T Consensus         7 ~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~   41 (43)
T smart00135        7 GLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGT   41 (43)
T ss_pred             CCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCC
Confidence            46689999976667789999999999999998764

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=91.23  E-value=6.7  Score=39.89  Aligned_cols=118  Identities=13%  Similarity=0.055  Sum_probs=70.6

Q ss_pred             ceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCCC
Q 014345           23 PYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNM  102 (426)
Q Consensus        23 P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N~  102 (426)
                      +--+|.||.|-|+++-.++..|..+|...- ...+....       ...+     .....=++|-+.++|...+.-+.++
T Consensus       143 ~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~-dkgPF~tf-------~i~~-----~~~~ew~~l~FS~dGK~iLlsT~~s  209 (311)
T KOG1446|consen  143 RPIAAFDPEGLIFALANGSELIKLYDLRSF-DKGPFTTF-------SITD-----NDEAEWTDLEFSPDGKSILLSTNAS  209 (311)
T ss_pred             CcceeECCCCcEEEEecCCCeEEEEEeccc-CCCCceeE-------ccCC-----CCccceeeeEEcCCCCEEEEEeCCC
Confidence            344566777766666655556665555310 00000000       0000     1123346899999999777777788


Q ss_pred             EEEEEc--CCCc-EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCC
Q 014345          103 AIRKIS--DSGV-TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHF  168 (426)
Q Consensus       103 rIrk~d--~g~V-stIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~  168 (426)
                      .|..+|  +|.+ .++.+-..              ....|-+-+ ..+++..+++-.++++|.+++++.
T Consensus       210 ~~~~lDAf~G~~~~tfs~~~~--------------~~~~~~~a~-ftPds~Fvl~gs~dg~i~vw~~~t  263 (311)
T KOG1446|consen  210 FIYLLDAFDGTVKSTFSGYPN--------------AGNLPLSAT-FTPDSKFVLSGSDDGTIHVWNLET  263 (311)
T ss_pred             cEEEEEccCCcEeeeEeeccC--------------CCCcceeEE-ECCCCcEEEEecCCCcEEEEEcCC
Confidence            899999  7774 45544211              122344444 578899999988999999999864

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=90.93  E-value=11  Score=33.68  Aligned_cols=111  Identities=15%  Similarity=0.165  Sum_probs=65.5

Q ss_pred             CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCC
Q 014345           22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN  101 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N  101 (426)
                      ...++++.+++.++++...++.|..++....  .....+.+.                -.....+++++++.++++-..+
T Consensus        95 ~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~----------------~~~i~~~~~~~~~~~l~~~~~~  156 (289)
T cd00200          95 YVSSVAFSPDGRILSSSSRDKTIKVWDVETG--KCLTTLRGH----------------TDWVNSVAFSPDGTFVASSSQD  156 (289)
T ss_pred             cEEEEEEcCCCCEEEEecCCCeEEEEECCCc--EEEEEeccC----------------CCcEEEEEEcCcCCEEEEEcCC
Confidence            4667777777777777766777888777521  011111110                1235788999888877777667


Q ss_pred             CEEEEEc-C-CC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCC-eEEEEECCCCeEEEEEcCCC
Q 014345          102 MAIRKIS-D-SG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSC-SLLVIDRGNRAIREIQLHFD  169 (426)
Q Consensus       102 ~rIrk~d-~-g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G-~LYVaDsgN~rIr~I~l~~~  169 (426)
                      +.|+.++ . +. +..+...                 -.....++ ..+++ .|+++.. ++.|+.++....
T Consensus       157 ~~i~i~d~~~~~~~~~~~~~-----------------~~~i~~~~-~~~~~~~l~~~~~-~~~i~i~d~~~~  209 (289)
T cd00200         157 GTIKLWDLRTGKCVATLTGH-----------------TGEVNSVA-FSPDGEKLLSSSS-DGTIKLWDLSTG  209 (289)
T ss_pred             CcEEEEEccccccceeEecC-----------------ccccceEE-ECCCcCEEEEecC-CCcEEEEECCCC
Confidence            8888888 2 33 2333211                 01235566 45555 4555554 778888887653

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=90.70  E-value=3  Score=43.71  Aligned_cols=79  Identities=18%  Similarity=0.292  Sum_probs=50.0

Q ss_pred             CCCCCCceEEEEcC-CCcEEEEECCCCeEEEEeCCCCcccccEEEec-CCCCcccccCCcccccccCCcceEEEc--C--
Q 014345           17 SKLGIEPYSVEVLP-GGELLILDSANSNLYRISSSLSLYSRPKLVAG-SAEGYSGHVDGKPREARMNHPKGLTVD--D--   90 (426)
Q Consensus        17 ~~l~~~P~GIaVd~-dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG-~~~G~~G~~dG~a~~A~Ln~P~GIaVd--~--   90 (426)
                      ..+...|.|+++|. .|.|||++ .+.-|++++.+.........++- .+.+.            ..-..||++-  .  
T Consensus       204 f~~~sQ~EGCVVDDe~g~LYvgE-E~~GIW~y~Aep~~~~~~~~v~~~~g~~l------------~aDvEGlaly~~~~g  270 (381)
T PF02333_consen  204 FKVGSQPEGCVVDDETGRLYVGE-EDVGIWRYDAEPEGGNDRTLVASADGDGL------------VADVEGLALYYGSDG  270 (381)
T ss_dssp             EE-SS-EEEEEEETTTTEEEEEE-TTTEEEEEESSCCC-S--EEEEEBSSSSB-------------S-EEEEEEEE-CCC
T ss_pred             ecCCCcceEEEEecccCCEEEec-CccEEEEEecCCCCCCcceeeeccccccc------------ccCccceEEEecCCC
Confidence            33445899999987 68899999 56799999887332112233321 11111            1235788884  2  


Q ss_pred             CCCEEEEECCCCEEEEEc
Q 014345           91 RGNIYIADTMNMAIRKIS  108 (426)
Q Consensus        91 dG~LYVADt~N~rIrk~d  108 (426)
                      .|-|+|++-+++...+++
T Consensus       271 ~gYLivSsQG~~sf~Vy~  288 (381)
T PF02333_consen  271 KGYLIVSSQGDNSFAVYD  288 (381)
T ss_dssp             -EEEEEEEGGGTEEEEEE
T ss_pred             CeEEEEEcCCCCeEEEEe
Confidence            356999999999999998

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=89.99  E-value=8.8  Score=38.74  Aligned_cols=131  Identities=16%  Similarity=0.139  Sum_probs=76.8

Q ss_pred             CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEc----CCCCEEEE
Q 014345           22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVD----DRGNIYIA   97 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd----~dG~LYVA   97 (426)
                      ..+.|..+.+|+++|+-...+.|++|+...   |.+.+..|...+  ++..  .....|..-+...+-    .++.|-|-
T Consensus       145 HiNsV~~~~~G~yLiS~R~~~~i~~I~~~t---G~I~W~lgG~~~--~df~--~~~~~f~~QHdar~~~~~~~~~~IslF  217 (299)
T PF14269_consen  145 HINSVDKDDDGDYLISSRNTSTIYKIDPST---GKIIWRLGGKRN--SDFT--LPATNFSWQHDARFLNESNDDGTISLF  217 (299)
T ss_pred             EeeeeeecCCccEEEEecccCEEEEEECCC---CcEEEEeCCCCC--Cccc--ccCCcEeeccCCEEeccCCCCCEEEEE
Confidence            567888889999999999999999999764   667776654311  1101  123345555555554    55666666


Q ss_pred             EC----------CCCEEEEEc-CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEE
Q 014345           98 DT----------MNMAIRKIS-DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQ  165 (426)
Q Consensus        98 Dt----------~N~rIrk~d-~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~  165 (426)
                      |-          ...+|..++ ... ++.+..-. ....+.      .+....  . +-.-++|+++|+....++|..++
T Consensus       218 DN~~~~~~~~~~s~~~v~~ld~~~~~~~~~~~~~-~~~~~~------~s~~~G--~-~Q~L~nGn~li~~g~~g~~~E~~  287 (299)
T PF14269_consen  218 DNANSDFNGTEPSRGLVLELDPETMTVTLVREYS-DHPDGF------YSPSQG--S-AQRLPNGNVLIGWGNNGRISEFT  287 (299)
T ss_pred             cCCCCCCCCCcCCCceEEEEECCCCEEEEEEEee-cCCCcc------cccCCC--c-ceECCCCCEEEecCCCceEEEEC
Confidence            64          345677777 322 33222110 000000      000111  1 11236799999999999999999


Q ss_pred             cCCC
Q 014345          166 LHFD  169 (426)
Q Consensus       166 l~~~  169 (426)
                      .++.
T Consensus       288 ~~G~  291 (299)
T PF14269_consen  288 PDGE  291 (299)
T ss_pred             CCCC
Confidence            8764

>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=89.63  E-value=1.6  Score=31.15  Aligned_cols=38  Identities=21%  Similarity=0.154  Sum_probs=31.8

Q ss_pred             CeEEEEECCCC-eEEEEEcCCCceEe--ecCCCCcceEEEE
Q 014345          149 CSLLVIDRGNR-AIREIQLHFDDCAY--QYGSSFPLGIAVL  186 (426)
Q Consensus       149 G~LYVaDsgN~-rIr~I~l~~~~~~~--~~~~g~P~GIAv~  186 (426)
                      +.||-+|...+ .|.+.++++.....  ......|.|||++
T Consensus         1 ~~iYWtD~~~~~~I~~a~~dGs~~~~vi~~~l~~P~giaVD   41 (42)
T PF00058_consen    1 GKIYWTDWSQDPSIERANLDGSNRRTVISDDLQHPEGIAVD   41 (42)
T ss_dssp             TEEEEEETTTTEEEEEEETTSTSEEEEEESSTSSEEEEEEE
T ss_pred             CEEEEEECCCCcEEEEEECCCCCeEEEEECCCCCcCEEEEC
Confidence            57999999999 99999999877543  4556789999987

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=89.47  E-value=9.6  Score=43.04  Aligned_cols=114  Identities=15%  Similarity=0.201  Sum_probs=79.0

Q ss_pred             CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCC
Q 014345           22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN  101 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N  101 (426)
                      .-..+++.|||.+.++-...++|.+++...++     +++--.+..+|             -+++.+..+|+..++-+..
T Consensus       352 ~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sgf-----C~vTFteHts~-------------Vt~v~f~~~g~~llssSLD  413 (893)
T KOG0291|consen  352 RITSLAYSPDGQLIATGAEDGKVKVWNTQSGF-----CFVTFTEHTSG-------------VTAVQFTARGNVLLSSSLD  413 (893)
T ss_pred             ceeeEEECCCCcEEEeccCCCcEEEEeccCce-----EEEEeccCCCc-------------eEEEEEEecCCEEEEeecC
Confidence            56789999999999999999999999887433     12211111122             3689999999999999999


Q ss_pred             CEEEEEc-CCC--cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEEC-CCCeEEEEEcCCCc
Q 014345          102 MAIRKIS-DSG--VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDR-GNRAIREIQLHFDD  170 (426)
Q Consensus       102 ~rIrk~d-~g~--VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDs-gN~rIr~I~l~~~~  170 (426)
                      ++||.+| ...  ..|+....             ..+|   .+|+ +|+.|.|.++-. .+-.|.+++...+.
T Consensus       414 GtVRAwDlkRYrNfRTft~P~-------------p~Qf---scva-vD~sGelV~AG~~d~F~IfvWS~qTGq  469 (893)
T KOG0291|consen  414 GTVRAWDLKRYRNFRTFTSPE-------------PIQF---SCVA-VDPSGELVCAGAQDSFEIFVWSVQTGQ  469 (893)
T ss_pred             CeEEeeeecccceeeeecCCC-------------ceee---eEEE-EcCCCCEEEeeccceEEEEEEEeecCe
Confidence            9999999 332  55654421             1233   4566 788888877654 45677777766543

>PRK02888 nitrous-oxide reductase; Validated

Probab=88.92  E-value=2.1  Score=47.44  Aligned_cols=76  Identities=21%  Similarity=0.240  Sum_probs=53.9

Q ss_pred             CCCceEEEEcCCCc-EEEEECCCCeEEEEeCCCCcc---cc---cEEEecCCCCcccccCCcccccccCCcceEEEcCCC
Q 014345           20 GIEPYSVEVLPGGE-LLILDSANSNLYRISSSLSLY---SR---PKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRG   92 (426)
Q Consensus        20 ~~~P~GIaVd~dG~-LYVaD~~n~rI~kid~dg~~~---g~---v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG   92 (426)
                      +.+|+||+++|||. +||+.-..+.|.+||...-..   ++   -.++++...  -|           ..|.-.++|.+|
T Consensus       320 GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaeve--vG-----------lGPLHTaFDg~G  386 (635)
T PRK02888        320 PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPE--LG-----------LGPLHTAFDGRG  386 (635)
T ss_pred             CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeec--cC-----------CCcceEEECCCC
Confidence            45899999999998 888887788899998863110   00   012222210  01           148899999999


Q ss_pred             CEEEEECCCCEEEEEc
Q 014345           93 NIYIADTMNMAIRKIS  108 (426)
Q Consensus        93 ~LYVADt~N~rIrk~d  108 (426)
                      +.|++=.-...|.+++
T Consensus       387 ~aytslf~dsqv~kwn  402 (635)
T PRK02888        387 NAYTTLFLDSQIVKWN  402 (635)
T ss_pred             CEEEeEeecceeEEEe
Confidence            9999887788899998

>PTZ00421 coronin; Provisional

Probab=88.87  E-value=32  Score=37.22  Aligned_cols=115  Identities=12%  Similarity=0.073  Sum_probs=70.6

Q ss_pred             ceEEEEcC-CCcEEEEECCCCeEEEEeCCCCcc-c----ccEEEecCCCCcccccCCcccccccCCcceEEEcCCC-CEE
Q 014345           23 PYSVEVLP-GGELLILDSANSNLYRISSSLSLY-S----RPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRG-NIY   95 (426)
Q Consensus        23 P~GIaVd~-dG~LYVaD~~n~rI~kid~dg~~~-g----~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG-~LY   95 (426)
                      -.+|++++ +++++++-+..+.|..++...... .    .+..+.|       +         -..-..|++.+++ +++
T Consensus        78 V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~g-------H---------~~~V~~l~f~P~~~~iL  141 (493)
T PTZ00421         78 IIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQG-------H---------TKKVGIVSFHPSAMNVL  141 (493)
T ss_pred             EEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecC-------C---------CCcEEEEEeCcCCCCEE
Confidence            46889988 788888777888888887653110 0    0111111       1         1123568888865 677


Q ss_pred             EEECCCCEEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCce
Q 014345           96 IADTMNMAIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDC  171 (426)
Q Consensus        96 VADt~N~rIrk~d--~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~  171 (426)
                      ++-..++.|+.+|  .+. +.++.+..                 ..-.+|+ +.++|.++++-..++.|+.+++....+
T Consensus       142 aSgs~DgtVrIWDl~tg~~~~~l~~h~-----------------~~V~sla-~spdG~lLatgs~Dg~IrIwD~rsg~~  202 (493)
T PTZ00421        142 ASAGADMVVNVWDVERGKAVEVIKCHS-----------------DQITSLE-WNLDGSLLCTTSKDKKLNIIDPRDGTI  202 (493)
T ss_pred             EEEeCCCEEEEEECCCCeEEEEEcCCC-----------------CceEEEE-EECCCCEEEEecCCCEEEEEECCCCcE
Confidence            7767788899998  333 23332210                 0134566 456777777777788888888775444

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=88.28  E-value=29  Score=35.40  Aligned_cols=111  Identities=10%  Similarity=0.106  Sum_probs=73.2

Q ss_pred             CceEEEEcC-CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECC
Q 014345           22 EPYSVEVLP-GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTM  100 (426)
Q Consensus        22 ~P~GIaVd~-dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~  100 (426)
                      .-.+|++.| +++.||+-........+|....  .-+.++.|..    .            --+.|++.|+|.-|++-+.
T Consensus       188 DV~slsl~p~~~ntFvSg~cD~~aklWD~R~~--~c~qtF~ghe----s------------DINsv~ffP~G~afatGSD  249 (343)
T KOG0286|consen  188 DVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG--QCVQTFEGHE----S------------DINSVRFFPSGDAFATGSD  249 (343)
T ss_pred             cEEEEecCCCCCCeEEecccccceeeeeccCc--ceeEeecccc----c------------ccceEEEccCCCeeeecCC
Confidence            467788888 8999998876666666666421  1233343321    1            1467899999999999888


Q ss_pred             CCEEEEEc---CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEc
Q 014345          101 NMAIRKIS---DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQL  166 (426)
Q Consensus       101 N~rIrk~d---~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l  166 (426)
                      +...|.+|   +..+.+.....               ....-+.++ +...|+|+++-..+..+.+.+.
T Consensus       250 D~tcRlyDlRaD~~~a~ys~~~---------------~~~gitSv~-FS~SGRlLfagy~d~~c~vWDt  302 (343)
T KOG0286|consen  250 DATCRLYDLRADQELAVYSHDS---------------IICGITSVA-FSKSGRLLFAGYDDFTCNVWDT  302 (343)
T ss_pred             CceeEEEeecCCcEEeeeccCc---------------ccCCceeEE-EcccccEEEeeecCCceeEeec
Confidence            88999998   22344443211               112235667 5778999998777777777774

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=88.04  E-value=26  Score=37.42  Aligned_cols=132  Identities=14%  Similarity=0.106  Sum_probs=79.2

Q ss_pred             ecCCcEEEEEecCCCCCCCceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCc
Q 014345            4 FESGYTVETVFDGSKLGIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHP   83 (426)
Q Consensus         4 ~~~G~tv~tv~~g~~l~~~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P   83 (426)
                      +.+|+....+.+. .....-+.+++.|||.|+.+-..++.|..++....     ..++ .+.|..|    +        -
T Consensus       332 ~~~g~~lt~vs~~-~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~-----~~~a-~Fpght~----~--------v  392 (506)
T KOG0289|consen  332 ISSGSQLTVVSDE-TSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQ-----TNVA-KFPGHTG----P--------V  392 (506)
T ss_pred             ccCCcEEEEEeec-cccceeEEeeEcCCceEEeccCCCceEEEEEcCCc-----cccc-cCCCCCC----c--------e
Confidence            4567777666664 22234678899999999999999999988888631     1222 1112222    1        3


Q ss_pred             ceEEEcCCCCEEEEECCCCEEEEEc--CC-CcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCe
Q 014345           84 KGLTVDDRGNIYIADTMNMAIRKIS--DS-GVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRA  160 (426)
Q Consensus        84 ~GIaVd~dG~LYVADt~N~rIrk~d--~g-~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~r  160 (426)
                      ..|.|..+|.-.++.+....|+.+|  +- .+.++.-.                .+..-..+. +|..|..+++-...-+
T Consensus       393 k~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~----------------~~~~v~s~~-fD~SGt~L~~~g~~l~  455 (506)
T KOG0289|consen  393 KAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLD----------------EKKEVNSLS-FDQSGTYLGIAGSDLQ  455 (506)
T ss_pred             eEEEeccCceEEEEEecCCeEEEEEehhhcccceeecc----------------ccccceeEE-EcCCCCeEEeecceeE
Confidence            5689998888777766666688888  22 25555431                011234555 5777766666644444


Q ss_pred             EEEEEcCCCce
Q 014345          161 IREIQLHFDDC  171 (426)
Q Consensus       161 Ir~I~l~~~~~  171 (426)
                      |+.+.......
T Consensus       456 Vy~~~k~~k~W  466 (506)
T KOG0289|consen  456 VYICKKKTKSW  466 (506)
T ss_pred             EEEEecccccc
Confidence            55554333333

>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller

Probab=87.90  E-value=1  Score=31.56  Aligned_cols=29  Identities=14%  Similarity=0.176  Sum_probs=21.2

Q ss_pred             ecCCCCCCCceEEEEcCCCcEEEEECCCC
Q 014345           14 FDGSKLGIEPYSVEVLPGGELLILDSANS   42 (426)
Q Consensus        14 ~~g~~l~~~P~GIaVd~dG~LYVaD~~n~   42 (426)
                      +.+..-...+.+|++|++|++||+-..++
T Consensus         6 lG~~~~~~~~~~IavD~~GNiYv~G~T~~   34 (38)
T PF06739_consen    6 LGGPGAQDYGNGIAVDSNGNIYVTGYTNG   34 (38)
T ss_pred             eCCCCCceeEEEEEECCCCCEEEEEeecC
Confidence            33333334699999999999999976543

SBBP stands for Seven Bladed Beta Propeller.

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=87.90  E-value=3.6  Score=42.70  Aligned_cols=125  Identities=17%  Similarity=0.201  Sum_probs=76.3

Q ss_pred             EEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCC---------Cc--ccccCCcccccccCCcceEE-------
Q 014345           26 VEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAE---------GY--SGHVDGKPREARMNHPKGLT-------   87 (426)
Q Consensus        26 IaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~---------G~--~G~~dG~a~~A~Ln~P~GIa-------   87 (426)
                      ++++-+..++|+.+....|+++|-+.+.  -+.++++..+         |+  .-+.|-.+.-..+..|..++       
T Consensus       241 LCLqyd~rviisGSSDsTvrvWDv~tge--~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvG  318 (499)
T KOG0281|consen  241 LCLQYDERVIVSGSSDSTVRVWDVNTGE--PLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVG  318 (499)
T ss_pred             EeeeccceEEEecCCCceEEEEeccCCc--hhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhh
Confidence            4455566688888888888888877432  1122222110         10  11123333334455555432       


Q ss_pred             -------EcCCCCEEEEECCCCEEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECC
Q 014345           88 -------VDDRGNIYIADTMNMAIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRG  157 (426)
Q Consensus        88 -------Vd~dG~LYVADt~N~rIrk~d--~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsg  157 (426)
                             ||=+..++|+-++...|+.++  .+. |.++.|-                    -.|||+.--.|.|.|+.+.
T Consensus       319 HrAaVNvVdfd~kyIVsASgDRTikvW~~st~efvRtl~gH--------------------kRGIAClQYr~rlvVSGSS  378 (499)
T KOG0281|consen  319 HRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGH--------------------KRGIACLQYRDRLVVSGSS  378 (499)
T ss_pred             hhhheeeeccccceEEEecCCceEEEEeccceeeehhhhcc--------------------cccceehhccCeEEEecCC
Confidence                   223446777878888888887  344 5666652                    2456777778999999999


Q ss_pred             CCeEEEEEcCCCceE
Q 014345          158 NRAIREIQLHFDDCA  172 (426)
Q Consensus       158 N~rIr~I~l~~~~~~  172 (426)
                      .+.||.++.+.+.|.
T Consensus       379 DntIRlwdi~~G~cL  393 (499)
T KOG0281|consen  379 DNTIRLWDIECGACL  393 (499)
T ss_pred             CceEEEEeccccHHH
Confidence            999999998876653

>COG3211 PhoX Predicted phosphatase [General function prediction only]

Probab=87.46  E-value=5.9  Score=43.49  Aligned_cols=80  Identities=19%  Similarity=0.230  Sum_probs=49.6

Q ss_pred             ccccCCcceEEEcCC-CCEEEEECCCC----------------EEEEEc--CC-------C--cEEEeCCccCCCCCCCC
Q 014345           77 EARMNHPKGLTVDDR-GNIYIADTMNM----------------AIRKIS--DS-------G--VTTIAGGKWGRGGGHVD  128 (426)
Q Consensus        77 ~A~Ln~P~GIaVd~d-G~LYVADt~N~----------------rIrk~d--~g-------~--VstIaGg~~g~~~G~~d  128 (426)
                      ...+..|.+|++.+. |.+|++.+.|.                .|.++-  .+       +  +...+|.......+. .
T Consensus       413 AT~mdRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~-~  491 (616)
T COG3211         413 ATPMDRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGA-S  491 (616)
T ss_pred             CccccCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCcccccccc-c
Confidence            346899999999984 78999999776                233332  11       2  233344322111111 1


Q ss_pred             CCcccccCCCCCeeEEECCCCeEEEEECCC
Q 014345          129 GPSEDAKFSNDFDVVYIGSSCSLLVIDRGN  158 (426)
Q Consensus       129 G~~~~a~f~~P~gIa~vd~~G~LYVaDsgN  158 (426)
                      ..-....|+.|-+|+ +|+.|+|||+.-++
T Consensus       492 ~~~~~~~f~~PDnl~-fD~~GrLWi~TDg~  520 (616)
T COG3211         492 ANINANWFNSPDNLA-FDPWGRLWIQTDGS  520 (616)
T ss_pred             cCcccccccCCCceE-ECCCCCEEEEecCC
Confidence            122225699999999 79999999976443

>KOG3567 consensus Peptidylglycine alpha-amidating monooxygenase [Posttranslational modification, protein turnover, chaperones]

Probab=86.24  E-value=2.7  Score=44.92  Aligned_cols=127  Identities=13%  Similarity=0.090  Sum_probs=81.1

Q ss_pred             CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECC-
Q 014345           22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTM-  100 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~-  100 (426)
                      -|+|..+|.+|+.+++|..-|.+.++.+..   ..+.+..|.. ...|.     ..+.|..|..++|..+|-|+|+|.. 
T Consensus       169 vhyg~t~df~~~~d~TgV~mH~t~kp~pkl---a~~~L~l~~~-tvp~~-----~~~~f~~~tsc~v~~n~~ihvfa~r~  239 (501)
T KOG3567|consen  169 VHYGLTIDFDGNYDVTGVGMHQTEKPQPKL---AKTMLLLGDG-TVPGE-----GTKHFETPTSCAVEENGPIHVFAYRC  239 (501)
T ss_pred             eccccccCCCCCcccccceeeeeccCCchh---hceEEeecCC-ccCCC-----CccccCCCceEEEecCcceeeEEeee
Confidence            599999999999999999999999988873   4445554432 11221     2345888999999999999999976 


Q ss_pred             CCEEEEEc-CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCC-CeEEEEECCCCeEEEEEcC
Q 014345          101 NMAIRKIS-DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSS-CSLLVIDRGNRAIREIQLH  167 (426)
Q Consensus       101 N~rIrk~d-~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~-G~LYVaDsgN~rIr~I~l~  167 (426)
                      |-+|.+.. +|-...-.........|.          ..|+-..++.+- ..+-|+|.+|.+++++-..
T Consensus       240 hTh~Lgk~vsG~lv~q~~~g~w~~ig~----------r~Pq~pqlf~~v~~~~~iadgD~~~vrC~~~s  298 (501)
T KOG3567|consen  240 HTHILGKVVSGYLVAQKHEGHWTLIGR----------RDPQLPQLFEPVNHIVCVADGDNQRVRCFFQS  298 (501)
T ss_pred             eehhhcceeeeeEeeeccCcceeeccc----------cCCCchhhhcCCCcceeeecCCceEEEEEEcc
Confidence            44555555 333211111000000111          123333333343 3788999999999999765

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=85.69  E-value=3.2  Score=28.32  Aligned_cols=39  Identities=21%  Similarity=0.358  Sum_probs=26.8

Q ss_pred             CCCeEEEEECCCCeEEEEEcCCCceEe-ecCCCCcceEEE
Q 014345          147 SSCSLLVIDRGNRAIREIQLHFDDCAY-QYGSSFPLGIAV  185 (426)
Q Consensus       147 ~~G~LYVaDsgN~rIr~I~l~~~~~~~-~~~~g~P~GIAv  185 (426)
                      +.+.|||++++.+.|.+|++....... ......|.+|++
T Consensus         2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~   41 (42)
T TIGR02276         2 DGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV   41 (42)
T ss_pred             CCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence            356799999999999999986544322 222345777664

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]

Probab=85.28  E-value=3.8  Score=43.24  Aligned_cols=73  Identities=18%  Similarity=0.282  Sum_probs=50.7

Q ss_pred             CceEEEEcC-C------CcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCE
Q 014345           22 EPYSVEVLP-G------GELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNI   94 (426)
Q Consensus        22 ~P~GIaVd~-d------G~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~L   94 (426)
                      -|.|+++-. +      |.|+|+....-.+.+.+.++.    .+++....  ..+.  .      -..|.+|++.+||.|
T Consensus       315 ApsGmaFy~G~~fP~~r~~lfV~~hgsw~~~~~~~~g~----~~~~~~~f--l~~d--~------~gR~~dV~v~~DGal  380 (399)
T COG2133         315 APSGMAFYTGDLFPAYRGDLFVGAHGSWPVLRLRPDGN----YKVVLTGF--LSGD--L------GGRPRDVAVAPDGAL  380 (399)
T ss_pred             ccceeEEecCCcCccccCcEEEEeecceeEEEeccCCC----cceEEEEE--EecC--C------CCcccceEECCCCeE
Confidence            468999863 3      689999877767888877753    23332211  1110  0      136999999999999


Q ss_pred             EEEECC-CCEEEEEc
Q 014345           95 YIADTM-NMAIRKIS  108 (426)
Q Consensus        95 YVADt~-N~rIrk~d  108 (426)
                      ||+|-. |.+|.++.
T Consensus       381 lv~~D~~~g~i~Rv~  395 (399)
T COG2133         381 LVLTDQGDGRILRVS  395 (399)
T ss_pred             EEeecCCCCeEEEec
Confidence            999877 77999987

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=85.11  E-value=19  Score=38.02  Aligned_cols=121  Identities=15%  Similarity=0.127  Sum_probs=81.9

Q ss_pred             ceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCCC
Q 014345           23 PYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNM  102 (426)
Q Consensus        23 P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N~  102 (426)
                      --++++.|+|..+++.++...++.+|.++..  -..+.-|.                -+.-..|+..|||..+.+-..++
T Consensus       118 Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeT--p~~t~KgH----------------~~WVlcvawsPDgk~iASG~~dg  179 (480)
T KOG0271|consen  118 VLSVQFSPTGSRLVTGSGDTTVRLWDLDTET--PLFTCKGH----------------KNWVLCVAWSPDGKKIASGSKDG  179 (480)
T ss_pred             EEEEEecCCCceEEecCCCceEEeeccCCCC--cceeecCC----------------ccEEEEEEECCCcchhhccccCC
Confidence            3477888999999999999899889888531  12233222                23456789999999999999999


Q ss_pred             EEEEEc--CCC--cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceEee
Q 014345          103 AIRKIS--DSG--VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQ  174 (426)
Q Consensus       103 rIrk~d--~g~--VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~~~~  174 (426)
                      .|+.+|  .|+  ..++.|-+.+-          .+.-..|..+   ++.++++.+-+..+.|++.+.....|.+.
T Consensus       180 ~I~lwdpktg~~~g~~l~gH~K~I----------t~Lawep~hl---~p~~r~las~skDg~vrIWd~~~~~~~~~  242 (480)
T KOG0271|consen  180 SIRLWDPKTGQQIGRALRGHKKWI----------TALAWEPLHL---VPPCRRLASSSKDGSVRIWDTKLGTCVRT  242 (480)
T ss_pred             eEEEecCCCCCcccccccCcccce----------eEEeeccccc---CCCccceecccCCCCEEEEEccCceEEEE
Confidence            999999  444  24454421110          0111234443   35677778888888888888887777654

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=84.38  E-value=58  Score=34.30  Aligned_cols=118  Identities=16%  Similarity=0.139  Sum_probs=65.4

Q ss_pred             ccCCcceEEEcC---CCCEEE-EECCCCEEEEEc-----CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCC
Q 014345           79 RMNHPKGLTVDD---RGNIYI-ADTMNMAIRKIS-----DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSC  149 (426)
Q Consensus        79 ~Ln~P~GIaVd~---dG~LYV-ADt~N~rIrk~d-----~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G  149 (426)
                      .+..|.|+|+-.   +|.+|+ ....++.+..+.     ++.+....-..    +.         .-+.+-++++.|..+
T Consensus       154 ~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~----f~---------~~sQ~EGCVVDDe~g  220 (381)
T PF02333_consen  154 DLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVRE----FK---------VGSQPEGCVVDDETG  220 (381)
T ss_dssp             SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEE----EE----------SS-EEEEEEETTTT
T ss_pred             ccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEE----ec---------CCCcceEEEEecccC
Confidence            366789999852   466553 233356666543     22232111000    00         012567777778889


Q ss_pred             eEEEEECCCCeEEEEEcCCCce---Eee---cCC---CCcceEEEEecCCceEEEEEEEecccceeeecc
Q 014345          150 SLLVIDRGNRAIREIQLHFDDC---AYQ---YGS---SFPLGIAVLLAAGFFGYMLALLQRRVGTIVSSQ  210 (426)
Q Consensus       150 ~LYVaDsgN~rIr~I~l~~~~~---~~~---~~~---g~P~GIAv~~g~g~~Gy~~a~lq~~~g~~~~s~  210 (426)
                      .|||++- +.-|+++..+.+..   ...   .+.   .-.-||++..+..--||.++.-|..-.-.+...
T Consensus       221 ~LYvgEE-~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r  289 (381)
T PF02333_consen  221 RLYVGEE-DVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDR  289 (381)
T ss_dssp             EEEEEET-TTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEES
T ss_pred             CEEEecC-ccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEec
Confidence            9999997 57999999874322   111   111   124588888776667999988886544444443

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]

Probab=84.09  E-value=12  Score=42.93  Aligned_cols=135  Identities=19%  Similarity=0.217  Sum_probs=93.3

Q ss_pred             CceEEEEcC-CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcC-CCCEEEEEC
Q 014345           22 EPYSVEVLP-GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD-RGNIYIADT   99 (426)
Q Consensus        22 ~P~GIaVd~-dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~-dG~LYVADt   99 (426)
                      ....+.++. ++.+|-+|.....|.+...++...  .. +.+.               ....|.|+++|- .+++|.+|.
T Consensus       438 ~~~~~d~d~~~~~i~~~d~~~~~i~~~~~~~~~~--~~-~~~~---------------g~~~~~~lavD~~~~~~y~tDe  499 (877)
T KOG1215|consen  438 NAVALDFDVLNNRIYWADLSDEKICRASQDGSSE--CE-LCGD---------------GLCIPEGLAVDWIGDNIYWTDE  499 (877)
T ss_pred             cceEEEEEecCCEEEEEeccCCeEeeeccCCCcc--ce-Eecc---------------CccccCcEEEEeccCCceeccc
Confidence            344445544 456888898888888887775331  11 2222               256689999997 568999999


Q ss_pred             CCCEEEEEc-CCCc-EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECC-CCeEEEEEcCCCceEe--e
Q 014345          100 MNMAIRKIS-DSGV-TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRG-NRAIREIQLHFDDCAY--Q  174 (426)
Q Consensus       100 ~N~rIrk~d-~g~V-stIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsg-N~rIr~I~l~~~~~~~--~  174 (426)
                      .+..|.+.+ ++.. .+++..                .+..|..+++....|.+|.+|++ ..+|.+-.+++.....  .
T Consensus       500 ~~~~i~v~~~~g~~~~vl~~~----------------~l~~~r~~~v~p~~g~~~wtd~~~~~~i~ra~~dg~~~~~l~~  563 (877)
T KOG1215|consen  500 GNCLIEVADLDGSSRKVLVSK----------------DLDLPRSIAVDPEKGLMFWTDWGQPPRIERASLDGSERAVLVT  563 (877)
T ss_pred             CCceeEEEEccCCceeEEEec----------------CCCCccceeeccccCeeEEecCCCCchhhhhcCCCCCceEEEe
Confidence            999999988 6553 444432                12467888866668899999998 5578888888765543  3


Q ss_pred             cCCCCcceEEEEecCC
Q 014345          175 YGSSFPLGIAVLLAAG  190 (426)
Q Consensus       175 ~~~g~P~GIAv~~g~g  190 (426)
                      .+...|.|++++....
T Consensus       564 ~~~~~p~glt~d~~~~  579 (877)
T KOG1215|consen  564 NGILWPNGLTIDYETD  579 (877)
T ss_pred             CCccCCCcceEEeecc
Confidence            3357799999885543

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=83.73  E-value=10  Score=42.74  Aligned_cols=113  Identities=18%  Similarity=0.220  Sum_probs=76.6

Q ss_pred             CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCC
Q 014345           22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN  101 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N  101 (426)
                      --++++|||+-.+.++-....+|+.|+...+.  ..+++.|+.    ++ +|.        +--|..|+.|...++...+
T Consensus       598 TlYDm~Vdp~~k~v~t~cQDrnirif~i~sgK--q~k~FKgs~----~~-eG~--------lIKv~lDPSgiY~atScsd  662 (1080)
T KOG1408|consen  598 TLYDMAVDPTSKLVVTVCQDRNIRIFDIESGK--QVKSFKGSR----DH-EGD--------LIKVILDPSGIYLATSCSD  662 (1080)
T ss_pred             eEEEeeeCCCcceEEEEecccceEEEeccccc--eeeeecccc----cC-CCc--------eEEEEECCCccEEEEeecC
Confidence            36899999977776666666778888776432  345665542    22 343        5668888887666666667


Q ss_pred             CEEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcC
Q 014345          102 MAIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLH  167 (426)
Q Consensus       102 ~rIrk~d--~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~  167 (426)
                      ..+-++|  .|. +.+..|-..                 .-+|+. +.+++.=+|+-++.++|.++.+.
T Consensus       663 ktl~~~Df~sgEcvA~m~GHsE-----------------~VTG~k-F~nDCkHlISvsgDgCIFvW~lp  713 (1080)
T KOG1408|consen  663 KTLCFVDFVSGECVAQMTGHSE-----------------AVTGVK-FLNDCKHLISVSGDGCIFVWKLP  713 (1080)
T ss_pred             CceEEEEeccchhhhhhcCcch-----------------heeeee-ecccchhheeecCCceEEEEECc
Confidence            7788888  666 566555211                 135666 46788888888999999988864

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=83.61  E-value=54  Score=35.91  Aligned_cols=111  Identities=21%  Similarity=0.252  Sum_probs=64.2

Q ss_pred             CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCC
Q 014345           22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN  101 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N  101 (426)
                      .-.+++.+..++|+.+.. ...+++++..++             ++..+.-    ...=.+|.|+|+.++|.+.|.-.. 
T Consensus       365 qI~~~~~~~~~~~~t~g~-Dd~l~~~~~~~~-------------~~t~~~~----~~lg~QP~~lav~~d~~~avv~~~-  425 (603)
T KOG0318|consen  365 QIKGMAASESGELFTIGW-DDTLRVISLKDN-------------GYTKSEV----VKLGSQPKGLAVLSDGGTAVVACI-  425 (603)
T ss_pred             eEEEEeecCCCcEEEEec-CCeEEEEecccC-------------cccccce----eecCCCceeEEEcCCCCEEEEEec-
Confidence            455677766667766653 345666655422             1111100    001246999999999865544432 


Q ss_pred             CEEEEEcC-CCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCc
Q 014345          102 MAIRKISD-SGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDD  170 (426)
Q Consensus       102 ~rIrk~d~-g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~  170 (426)
                      ..|..+.+ ++++++--+                  ..|.++| +.++++....--..+.|+.+.+.+..
T Consensus       426 ~~iv~l~~~~~~~~~~~~------------------y~~s~vA-v~~~~~~vaVGG~Dgkvhvysl~g~~  476 (603)
T KOG0318|consen  426 SDIVLLQDQTKVSSIPIG------------------YESSAVA-VSPDGSEVAVGGQDGKVHVYSLSGDE  476 (603)
T ss_pred             CcEEEEecCCcceeeccc------------------cccceEE-EcCCCCEEEEecccceEEEEEecCCc
Confidence            34666664 345554311                  1467777 67778777766667778888887743

>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller

Probab=83.33  E-value=1.2  Score=31.33  Aligned_cols=21  Identities=38%  Similarity=0.721  Sum_probs=17.8

Q ss_pred             CCcceEEEcCCCCEEEEECCC
Q 014345           81 NHPKGLTVDDRGNIYIADTMN  101 (426)
Q Consensus        81 n~P~GIaVd~dG~LYVADt~N  101 (426)
                      ..+++|++|++|+|||+=..+
T Consensus        13 ~~~~~IavD~~GNiYv~G~T~   33 (38)
T PF06739_consen   13 DYGNGIAVDSNGNIYVTGYTN   33 (38)
T ss_pred             eeEEEEEECCCCCEEEEEeec
Confidence            358999999999999997654

SBBP stands for Seven Bladed Beta Propeller.

>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A

Probab=82.41  E-value=15  Score=35.96  Aligned_cols=114  Identities=16%  Similarity=0.219  Sum_probs=59.1

Q ss_pred             eEEEEcCCCcEEEEECCCCeEEEEeCCCCc----cc-ccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEE
Q 014345           24 YSVEVLPGGELLILDSANSNLYRISSSLSL----YS-RPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIAD   98 (426)
Q Consensus        24 ~GIaVd~dG~LYVaD~~n~rI~kid~dg~~----~g-~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVAD   98 (426)
                      ..|++++.|-||.++. ++.++|.......    .. ..+.+.+.               -.+...-|.++++|.||+.+
T Consensus        84 ~~i~~d~~G~LYaV~~-~G~lyR~~~~~~~~~~W~~~~~~~iG~~---------------GW~~f~~vfa~~~GvLY~i~  147 (229)
T PF14517_consen   84 KFIFFDPTGVLYAVTP-DGKLYRHPRPTNGSDNWIGGSGKKIGGT---------------GWNDFDAVFAGPNGVLYAIT  147 (229)
T ss_dssp             SEEEE-TTS-EEEEET-T-EEEEES---STT--HHH-HSEEEE-S---------------SGGGEEEEEE-TTS-EEEEE
T ss_pred             eEEEecCCccEEEecc-ccceeeccCCCccCcchhhccceecccC---------------CCccceEEEeCCCccEEEEc
Confidence            3899999999998885 6788887654221    11 12222222               14446779999999999999


Q ss_pred             CCCCEEEEEc--CCC------cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCc
Q 014345           99 TMNMAIRKIS--DSG------VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDD  170 (426)
Q Consensus        99 t~N~rIrk~d--~g~------VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~  170 (426)
                      .. +++.+..  +++      .+++.++.               .+..+..|. ..++|+||-+|+ ++.|.+-......
T Consensus       148 ~d-g~~~~~~~p~~~~~~W~~~s~~v~~~---------------gw~~~~~i~-~~~~g~L~~V~~-~G~lyr~~~p~~~  209 (229)
T PF14517_consen  148 PD-GRLYRRYRPDGGSDRWLSGSGLVGGG---------------GWDSFHFIF-FSPDGNLWAVKS-NGKLYRGRPPQNG  209 (229)
T ss_dssp             TT-E-EEEE---SSTT--HHHH-EEEESS---------------SGGGEEEEE-E-TTS-EEEE-E-TTEEEEES---ST
T ss_pred             CC-CceEEeCCCCCCCCccccccceeccC---------------CcccceEEe-eCCCCcEEEEec-CCEEeccCCcccC
Confidence            64 4666663  221      23333211               122355666 688999999965 7888877655433


Q ss_pred             e
Q 014345          171 C  171 (426)
Q Consensus       171 ~  171 (426)
                      |
T Consensus       210 ~  210 (229)
T PF14517_consen  210 C  210 (229)
T ss_dssp             T
T ss_pred             C
Confidence            3

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=82.34  E-value=25  Score=40.50  Aligned_cols=127  Identities=17%  Similarity=0.248  Sum_probs=67.7

Q ss_pred             CceEEEEcCCCcEEEEECCCCeEEEEeCCCCc--------cccc---------EEEecCCC-------CcccccCCcccc
Q 014345           22 EPYSVEVLPGGELLILDSANSNLYRISSSLSL--------YSRP---------KLVAGSAE-------GYSGHVDGKPRE   77 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~--------~g~v---------~~vaG~~~-------G~~G~~dG~a~~   77 (426)
                      +-+.|++|++|+.+++-..++.|++++.....        .|..         ..+.|+.+       ...|..++  .-
T Consensus        15 G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~~--iL   92 (933)
T KOG1274|consen   15 GLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEEDT--IL   92 (933)
T ss_pred             ceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCCccc--ee
Confidence            35789999999854444457778877554220        1111         11111111       01111111  23


Q ss_pred             cccCCcc-eEEEcCCCCEEEEECCCCEEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEE
Q 014345           78 ARMNHPK-GLTVDDRGNIYIADTMNMAIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLV  153 (426)
Q Consensus        78 A~Ln~P~-GIaVd~dG~LYVADt~N~rIrk~d--~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYV  153 (426)
                      ++|..|- .++|+.+|+..++-...-.|..++  +.. ..++-|-.         ++        -.+|. .+++++++.
T Consensus        93 ~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~---------ap--------Vl~l~-~~p~~~fLA  154 (933)
T KOG1274|consen   93 ARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHD---------AP--------VLQLS-YDPKGNFLA  154 (933)
T ss_pred             eeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccC---------Cc--------eeeee-EcCCCCEEE
Confidence            4566665 788998999888877777777776  444 44444421         11        12344 355555555


Q ss_pred             EECCCCeEEEEEcCC
Q 014345          154 IDRGNRAIREIQLHF  168 (426)
Q Consensus       154 aDsgN~rIr~I~l~~  168 (426)
                      +-..++.|+++++..
T Consensus       155 vss~dG~v~iw~~~~  169 (933)
T KOG1274|consen  155 VSSCDGKVQIWDLQD  169 (933)
T ss_pred             EEecCceEEEEEccc
Confidence            555566666666554

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=82.20  E-value=3.8  Score=42.04  Aligned_cols=55  Identities=24%  Similarity=0.321  Sum_probs=39.8

Q ss_pred             CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEE
Q 014345           22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIAD   98 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVAD   98 (426)
                      .|++-..- +|.|||+|++.+.|.++|.+.   |+...++--    .|            .|.||++.  |++.|.-
T Consensus       204 mPhSPRWh-dgrLwvldsgtGev~~vD~~~---G~~e~Va~v----pG------------~~rGL~f~--G~llvVg  258 (335)
T TIGR03032       204 MPHSPRWY-QGKLWLLNSGRGELGYVDPQA---GKFQPVAFL----PG------------FTRGLAFA--GDFAFVG  258 (335)
T ss_pred             CCcCCcEe-CCeEEEEECCCCEEEEEcCCC---CcEEEEEEC----CC------------CCccccee--CCEEEEE
Confidence            45555553 799999999999999999973   455666533    22            38899998  7766553

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=82.05  E-value=11  Score=42.40  Aligned_cols=111  Identities=14%  Similarity=0.191  Sum_probs=69.5

Q ss_pred             ceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCCC
Q 014345           23 PYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNM  102 (426)
Q Consensus        23 P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N~  102 (426)
                      -.++.+.|+.+...+.+..+.|+.+|...+  ..++.+.|.        .+        .-..|++.+.|.-.++-...+
T Consensus       538 V~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G--~~VRiF~GH--------~~--------~V~al~~Sp~Gr~LaSg~ed~  599 (707)
T KOG0263|consen  538 VDCVSFHPNSNYVATGSSDRTVRLWDVSTG--NSVRIFTGH--------KG--------PVTALAFSPCGRYLASGDEDG  599 (707)
T ss_pred             cceEEECCcccccccCCCCceEEEEEcCCC--cEEEEecCC--------CC--------ceEEEEEcCCCceEeecccCC
Confidence            345666666555555555566666665532  234444332        11        135688888888777776778


Q ss_pred             EEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCC
Q 014345          103 AIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFD  169 (426)
Q Consensus       103 rIrk~d--~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~  169 (426)
                      .|..+|  .+. +..+.|- .+                .-..|. +..+|.++|++.+++.|+..|+...
T Consensus       600 ~I~iWDl~~~~~v~~l~~H-t~----------------ti~Sls-FS~dg~vLasgg~DnsV~lWD~~~~  651 (707)
T KOG0263|consen  600 LIKIWDLANGSLVKQLKGH-TG----------------TIYSLS-FSRDGNVLASGGADNSVRLWDLTKV  651 (707)
T ss_pred             cEEEEEcCCCcchhhhhcc-cC----------------ceeEEE-EecCCCEEEecCCCCeEEEEEchhh
Confidence            888888  333 4444432 11                124556 4678999999999999999997753

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=81.36  E-value=42  Score=33.69  Aligned_cols=143  Identities=14%  Similarity=0.107  Sum_probs=79.4

Q ss_pred             CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCC
Q 014345           22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN  101 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N  101 (426)
                      .-+.+.+.+++..+++- ++-.|+.+|.+.+...-+.++-|.                -+.-..|.|-.+|+-..+-...
T Consensus        42 qVNrLeiTpdk~~LAaa-~~qhvRlyD~~S~np~Pv~t~e~h----------------~kNVtaVgF~~dgrWMyTgseD  104 (311)
T KOG0315|consen   42 QVNRLEITPDKKDLAAA-GNQHVRLYDLNSNNPNPVATFEGH----------------TKNVTAVGFQCDGRWMYTGSED  104 (311)
T ss_pred             ceeeEEEcCCcchhhhc-cCCeeEEEEccCCCCCceeEEecc----------------CCceEEEEEeecCeEEEecCCC
Confidence            45678888887765554 466677777764321111222221                1123457777788877777767


Q ss_pred             CEEEEEcCCC--cEEEeCCccCCCCCCCCCCcccccCCC-CCeeEEECCCCeEEEEECCCCeEEEEEcCCCceEeec---
Q 014345          102 MAIRKISDSG--VTTIAGGKWGRGGGHVDGPSEDAKFSN-DFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQY---  175 (426)
Q Consensus       102 ~rIrk~d~g~--VstIaGg~~g~~~G~~dG~~~~a~f~~-P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~~~~~---  175 (426)
                      +.+++.|-..  ...+.                  ++.. -+.|+.-+..+.|+++|. ++.|++.|+..+.|..+.   
T Consensus       105 gt~kIWdlR~~~~qR~~------------------~~~spVn~vvlhpnQteLis~dq-sg~irvWDl~~~~c~~~liPe  165 (311)
T KOG0315|consen  105 GTVKIWDLRSLSCQRNY------------------QHNSPVNTVVLHPNQTELISGDQ-SGNIRVWDLGENSCTHELIPE  165 (311)
T ss_pred             ceEEEEeccCcccchhc------------------cCCCCcceEEecCCcceEEeecC-CCcEEEEEccCCccccccCCC
Confidence            7777777222  11211                  1112 245554455668888885 688999999887665421   


Q ss_pred             -------CCCCcceEEEEecCC-ceEEEEEEEe
Q 014345          176 -------GSSFPLGIAVLLAAG-FFGYMLALLQ  200 (426)
Q Consensus       176 -------~~g~P~GIAv~~g~g-~~Gy~~a~lq  200 (426)
                             -.-.|.|--+.+++. ..-|+|-++.
T Consensus       166 ~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~  198 (311)
T KOG0315|consen  166 DDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLN  198 (311)
T ss_pred             CCcceeeEEEcCCCcEEEEecCCccEEEEEccC
Confidence                   112344444443322 4456666554

>PTZ00420 coronin; Provisional

Probab=80.82  E-value=97  Score=34.34  Aligned_cols=122  Identities=11%  Similarity=-0.003  Sum_probs=70.5

Q ss_pred             CceEEEEcCC-CcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCC-EEEEEC
Q 014345           22 EPYSVEVLPG-GELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIADT   99 (426)
Q Consensus        22 ~P~GIaVd~d-G~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~-LYVADt   99 (426)
                      ...+|++.++ ++++++-...+.|..++...... ....+.....-..|+         -..-..|++++++. ++++-.
T Consensus        76 ~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~-~~~~i~~p~~~L~gH---------~~~V~sVaf~P~g~~iLaSgS  145 (568)
T PTZ00420         76 SILDLQFNPCFSEILASGSEDLTIRVWEIPHNDE-SVKEIKDPQCILKGH---------KKKISIIDWNPMNYYIMCSSG  145 (568)
T ss_pred             CEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCc-cccccccceEEeecC---------CCcEEEEEECCCCCeEEEEEe
Confidence            4678889885 77888877888888888752100 000000000000111         11246788998876 444555


Q ss_pred             CCCEEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceE
Q 014345          100 MNMAIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCA  172 (426)
Q Consensus       100 ~N~rIrk~d--~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~~  172 (426)
                      .++.|+.+|  .+. +..+...                  .....++ ++++|.++++-...+.|+.+++....+.
T Consensus       146 ~DgtIrIWDl~tg~~~~~i~~~------------------~~V~Sls-wspdG~lLat~s~D~~IrIwD~Rsg~~i  202 (568)
T PTZ00420        146 FDSFVNIWDIENEKRAFQINMP------------------KKLSSLK-WNIKGNLLSGTCVGKHMHIIDPRKQEIA  202 (568)
T ss_pred             CCCeEEEEECCCCcEEEEEecC------------------CcEEEEE-ECCCCCEEEEEecCCEEEEEECCCCcEE
Confidence            578888888  333 2222110                  0134666 5778888887766788888888765443

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=80.14  E-value=31  Score=35.27  Aligned_cols=104  Identities=14%  Similarity=0.141  Sum_probs=58.4

Q ss_pred             CCceEEEEcC-CCc-EEEEECCCCeEEEEeCCCCcccccEEEecCC--CCcccccCCcccccccCCcceEEEcCCCC-EE
Q 014345           21 IEPYSVEVLP-GGE-LLILDSANSNLYRISSSLSLYSRPKLVAGSA--EGYSGHVDGKPREARMNHPKGLTVDDRGN-IY   95 (426)
Q Consensus        21 ~~P~GIaVd~-dG~-LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~--~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~-LY   95 (426)
                      ...+++++.| .+. +.|+-....-.++||..+   +......-.+  ..++|+               -++++||+ ||
T Consensus         5 ~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~---g~~~~~~~a~~gRHFyGH---------------g~fs~dG~~Ly   66 (305)
T PF07433_consen    5 ARGHGVAAHPTRPEAVAFARRPGTFALVFDCRT---GQLLQRLWAPPGRHFYGH---------------GVFSPDGRLLY   66 (305)
T ss_pred             ccccceeeCCCCCeEEEEEeCCCcEEEEEEcCC---CceeeEEcCCCCCEEecC---------------EEEcCCCCEEE
Confidence            3567888888 344 455555555667777764   2222222111  123333               36667776 66


Q ss_pred             EEE----CCCCEEEEEc-CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCC-eEEEEECC
Q 014345           96 IAD----TMNMAIRKIS-DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSC-SLLVIDRG  157 (426)
Q Consensus        96 VAD----t~N~rIrk~d-~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G-~LYVaDsg  157 (426)
                      .++    ++.++|-++| ..+...+.-- ..  .|           ..|+.|. ..++| .|.|++-|
T Consensus        67 tTEnd~~~g~G~IgVyd~~~~~~ri~E~-~s--~G-----------IGPHel~-l~pDG~tLvVANGG  119 (305)
T PF07433_consen   67 TTENDYETGRGVIGVYDAARGYRRIGEF-PS--HG-----------IGPHELL-LMPDGETLVVANGG  119 (305)
T ss_pred             EeccccCCCcEEEEEEECcCCcEEEeEe-cC--CC-----------cChhhEE-EcCCCCEEEEEcCC
Confidence            663    4467788888 4344444221 00  11           2599998 56777 88888744

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=80.08  E-value=39  Score=38.09  Aligned_cols=44  Identities=23%  Similarity=0.228  Sum_probs=30.4

Q ss_pred             cCCcEEEEEecCCCCCCCceEEEEcCCCcEEEEECCCCeEEEEeCCC
Q 014345            5 ESGYTVETVFDGSKLGIEPYSVEVLPGGELLILDSANSNLYRISSSL   51 (426)
Q Consensus         5 ~~G~tv~tv~~g~~l~~~P~GIaVd~dG~LYVaD~~n~rI~kid~dg   51 (426)
                      ..+.+.+++....+   =-+|..+.|+.+++++-+....|+-+..++
T Consensus       439 ~~~~~~~~L~GH~G---PVyg~sFsPd~rfLlScSED~svRLWsl~t  482 (707)
T KOG0263|consen  439 DSSGTSRTLYGHSG---PVYGCSFSPDRRFLLSCSEDSSVRLWSLDT  482 (707)
T ss_pred             cCCceeEEeecCCC---ceeeeeecccccceeeccCCcceeeeeccc
Confidence            34445555555444   247889999999999888877777776663

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	426
3tc9_A	430	Crystal Structure Of A Hypothetical Hydrolase (Bt_3		4e-04
3hrp_A	409	Crystal Structure Of Structural Genomics Protein Of		6e-04

>pdb|3TC9|A Chain A, Crystal Structure Of A Hypothetical Hydrolase (Bt_3476) From Bacteroides Thetaiotaomicron Vpi-5482 At 2.23 A Resolution Length = 430

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 55/119 (46%), Gaps = 12/119 (10%)
Query: 57  PKLVAGSAEGYSGHVDGKPREARMNHPKGLTV---------DDRGNIYIADTMNMAIRKI 107
           P +V G  +G    VDG  ++AR + P+  T           D  + Y  D  N  IR +
Sbjct: 309 PYIVCGQ-QGAKDWVDGVGKKARXHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRIL 367
Query: 108 SDSG-VTTIAGGKWGRGGGHVDGP-SEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREI 164
           +  G VTT AG       G+ DG   ++A+F++   +VY        + DR NR IR+I
Sbjct: 368 TPQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKI 426

>pdb|3HRP|A Chain A, Crystal Structure Of Structural Genomics Protein Of Unknown Function (np_812590.1) From Bacteroides Thetaiotaomicron Vpi-5482 At 1.70 A Resolution Length = 409

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 46/99 (46%), Gaps = 6/99 (6%)
Query: 72  DGKPREARMNHPKGLTVDDRGNIYIADTMN-MAIRK--ISDSGVTTIAGGKWGRGGGHVD 128
           DG   EA    P G TVD+ GN YI D      +RK  I D  V+T+AG         +D
Sbjct: 314 DGLREEALFAQPNGXTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQV--DVASQID 371
Query: 129 GPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLH 167
           G   +A F+  +D+ Y G      + +   +AIR+  + 
Sbjct: 372 GTPLEATFNYPYDICYDGEG-GYWIAEAWGKAIRKYAVE 409

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	426
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	2e-34
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	1e-16
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	3e-15
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	4e-07
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	2e-32
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	4e-13
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	2e-04
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	2e-04
3kya_A	496	Putative phosphatase; structural genomics, joint c	2e-25
3kya_A	496	Putative phosphatase; structural genomics, joint c	2e-14
3kya_A	496	Putative phosphatase; structural genomics, joint c	8e-06
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	3e-13
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	5e-13
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	2e-09
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	6e-11
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	5e-10
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	1e-09
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	2e-08
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	4e-05
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	2e-10
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	2e-09
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	2e-08
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	3e-10
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	6e-08
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	4e-06
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	8e-09
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	1e-08
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	2e-07

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} Length = 409

 Score =  131 bits (331), Expect = 2e-34
 Identities = 40/170 (23%), Positives = 63/170 (37%), Gaps = 16/170 (9%)

Query: 3   KFESGYTVETVFDGSKLGIE-----PYSVEVLPGGELLILDSANSNLYRISSSLSLYSRP 57
                  V  +      G       PY +         + D   S++Y+I+         
Sbjct: 245 FNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPD----GEC 300

Query: 58  KLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTM-NMAIRKI--SDSGVTT 114
           +   GSA       DG   EA    P G+TVD+ GN YI D      +RK+   D  V+T
Sbjct: 301 EWFCGSA-TQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVST 359

Query: 115 IAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREI 164
           +AG         +DG   +A F+  +D+          + +   +AIR+ 
Sbjct: 360 VAGQ--VDVASQIDGTPLEATFNYPYDIC-YDGEGGYWIAEAWGKAIRKY 406

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} Length = 409

 Score = 80.4 bits (198), Expect = 1e-16
 Identities = 24/166 (14%), Positives = 46/166 (27%), Gaps = 30/166 (18%)

Query: 5   ESGYTVETVFDGSKLGIEPYSVEVLPGG-----ELLILDSANSNLYRISSSLSLYSRPKL 59
           E     + +  GS  G +   V+V            ++   N+ LY ++           
Sbjct: 27  EGKLREKVIVKGSNFGTDKSKVKVYFVDEAAERLSTVIGIDNNTLYCLAPRQLPGGNRIK 86

Query: 60  V------------------------AGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIY 95
           V                        +GSA    G+ DG    A+  +  G+       + 
Sbjct: 87  VIVDGKEVTTDGTFKYEQAQNVSTISGSA-SKDGNDDGDLASAKFKYMWGIAAVGNNTVL 145

Query: 96  IADTMNMAIRKISDSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFD 141
                +  +R IS             +GG       +   +S  ++
Sbjct: 146 AYQRDDPRVRLISVDDNKVTTVHPGFKGGKPAVTKDKQRVYSIGWE 191

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} Length = 409

 Score = 76.1 bits (187), Expect = 3e-15
 Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 5/88 (5%)

Query: 22  EPYSVEVLPGGELLILDSANSNLYR-ISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARM 80
           +P  + V   G   I+D       R +       S    VAG     +  +DG P EA  
Sbjct: 324 QPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVS---TVAGQV-DVASQIDGTPLEATF 379

Query: 81  NHPKGLTVDDRGNIYIADTMNMAIRKIS 108
           N+P  +  D  G  +IA+    AIRK +
Sbjct: 380 NYPYDICYDGEGGYWIAEAWGKAIRKYA 407

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} Length = 409

 Score = 51.1 bits (122), Expect = 4e-07
 Identities = 20/172 (11%), Positives = 46/172 (26%), Gaps = 40/172 (23%)

Query: 23  PYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPK------------------------ 58
            + +  +    +L     +  +  IS   +  +                           
Sbjct: 133 MWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGKPAVTKDKQRVYSIGWEG 192

Query: 59  ----LVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIADTMNMAIRKISDSG-V 112
                V   A G++    G+           + +D+    +Y  D+     R    +  V
Sbjct: 193 THTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEV 252

Query: 113 TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREI 164
           T I   +     G   GP           ++Y     +  + D+   ++ +I
Sbjct: 253 TLIKQLELSGSLGTNPGPY----------LIYYFVDSNFYMSDQNLSSVYKI 294

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} Length = 430

 Score =  125 bits (316), Expect = 2e-32
 Identities = 44/173 (25%), Positives = 69/173 (39%), Gaps = 16/173 (9%)

Query: 6   SGYTVETVFDGSKLGIEPYSVEVLP-GGELLILDSANSNLYRISSSLSL--YSRPKLVAG 62
           +      +F     G   + ++  P G    I+      + R          + P +V G
Sbjct: 256 TTQETTPLFTIQDSGW-EFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCG 314

Query: 63  SAEGYSGHVDGKPREARMNHPKGLT---------VDDRGNIYIADTMNMAIRKISDSG-V 112
              G    VDG  ++ARM+ P+  T           D  + Y  D  N  IR ++  G V
Sbjct: 315 QQ-GAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTPQGRV 373

Query: 113 TTIAGGKWGRGGGHVDG-PSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREI 164
           TT AG       G+ DG   ++A+F++   +VY        + DR NR IR+I
Sbjct: 374 TTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKI 426

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} Length = 430

 Score = 69.8 bits (170), Expect = 4e-13
 Identities = 27/89 (30%), Positives = 36/89 (40%), Gaps = 7/89 (7%)

Query: 23  PYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAE-GYSGHVDGKPR-EARM 80
           P         +    D  N  +  ++       R    AG    G SG+ DG  R EAR 
Sbjct: 343 PAYKGSSDEYDFYFCDRENHCIRILTPQ----GRVTTFAGRGSNGTSGYNDGDLRQEARF 398

Query: 81  NHPKGLTVDDRGN-IYIADTMNMAIRKIS 108
           NHP+G+  D+     +I D  N  IRKI 
Sbjct: 399 NHPEGIVYDEERECFFIGDRENRRIRKIG 427

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} Length = 430

 Score = 42.4 bits (99), Expect = 2e-04
 Identities = 20/145 (13%), Positives = 46/145 (31%), Gaps = 24/145 (16%)

Query: 12  TVFDGSKLGIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGH- 70
            V   +  G    S+    G E+   ++    +Y+    ++         G+    +   
Sbjct: 70  VVPAKAYDGDIKLSILNDEGEEIANTEANEKFVYQKKMLVTT------FLGTMYDGNTKY 123

Query: 71  --VDGKPRE-ARMNHPKGLTVDDRGN--IYIADTMNMAIRKI--SDSGVTTIAGGKWGRG 123
              DG   +         L+ D + +  +Y+    +   R I      V+T+       G
Sbjct: 124 DLKDGPFDDCGGFGGAVWLSFDPKNHNHLYLVGEQH-PTRLIDFEKEYVSTVYS-----G 177

Query: 124 GGHVDGPSEDAKFSNDFDVVYIGSS 148
              V        ++++ D + I + 
Sbjct: 178 LSKVRTIC----WTHEADSMIITND 198

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} Length = 430

 Score = 42.4 bits (99), Expect = 2e-04
 Identities = 26/166 (15%), Positives = 45/166 (27%), Gaps = 30/166 (18%)

Query: 5   ESGYTVETVFDGSKLGIEPYSVEVLPGG-ELLILDSANSNLYRISSSLSLYSRPKLVAGS 63
           E G     +  G   G +   ++V  GG +  ++ +   +LY +                
Sbjct: 27  EGGLGTRMLLYGENFGSDISKIKVTIGGQDSKVVGAKGKSLYCVV--------------- 71

Query: 64  AEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMAIRKISDSGVTTIAG--GKWG 121
                      P +A     K   ++D G        N          VTT  G      
Sbjct: 72  -----------PAKAYDGDIKLSILNDEGEEIANTEANEKFVYQKKMLVTTFLGTMYDGN 120

Query: 122 RGGGHVDGP-SEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQL 166
                 DGP  +   F     + +   + + L +       R I  
Sbjct: 121 TKYDLKDGPFDDCGGFGGAVWLSFDPKNHNHLYLVGEQHPTRLIDF 166

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} Length = 496

 Score =  107 bits (267), Expect = 2e-25
 Identities = 40/163 (24%), Positives = 59/163 (36%), Gaps = 20/163 (12%)

Query: 23  PYSVEVLP-GGELLILDSANSNLYRIS--SSLSLYSRPKLVAGSAEGYSGHVDGKPREAR 79
            + + + P G         N    R         +  P    G     SG+ D    EAR
Sbjct: 312 EFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGY-KQSGYRDDVGTEAR 370

Query: 80  MNHP--------KGLTVDDRGNIYIADTMNMAIRKISDSG-VTTIAG------GKWGRGG 124
           MN+P           T ++  + Y  D +N  +RK++  G V+T AG         G   
Sbjct: 371 MNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTPEGIVSTYAGRGASTSLADGNQW 430

Query: 125 GHVDG-PSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQL 166
           G  DG   E A+F +   +VY        V D+    IR I +
Sbjct: 431 GTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISM 473

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} Length = 496

 Score = 73.8 bits (180), Expect = 2e-14
 Identities = 23/128 (17%), Positives = 41/128 (32%), Gaps = 21/128 (16%)

Query: 21  IEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAE-------GYSGHVDG 73
           ++          +   +D  N  + +++            AG             G  DG
Sbjct: 380 VKNPDYTGEEEYDFYFVDRLNFCVRKVTPE----GIVSTYAGRGASTSLADGNQWGTDDG 435

Query: 74  KPR-EARMNHPKGLTVDDRGN-IYIADTMNMAIRKISDSGVTTIAGGKWGRGGGHVDGPS 131
             R  AR     GL  DD     Y+ D +   IR IS      +AG +        + P 
Sbjct: 436 DLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENVAGDE--------NIPE 487

Query: 132 EDAKFSND 139
           +++   ++
Sbjct: 488 DESTVESN 495

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} Length = 496

 Score = 46.9 bits (110), Expect = 8e-06
 Identities = 18/168 (10%), Positives = 36/168 (21%), Gaps = 9/168 (5%)

Query: 6   SGYTVETVFDGSKLGIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPK--LVAGS 63
               + +  + + +                  D A   +  I         P   ++  +
Sbjct: 170 KNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRN 229

Query: 64  AEGYSGHVDGKPREARMNHPKGLTVDDR-GNIYIADTMNMAIRKISDSGV-TTIAGG--- 118
           A+G           A      G T+    G +Y        + ++       TI  G   
Sbjct: 230 ADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSW 289

Query: 119 --KWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREI 164
                            A  S +F +    +          N      
Sbjct: 290 DPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRS 337

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Length = 270

 Score = 68.4 bits (168), Expect = 3e-13
 Identities = 37/182 (20%), Positives = 60/182 (32%), Gaps = 36/182 (19%)

Query: 6   SGYTVETVFDGSKLGIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAE 65
           SG TV   F G    + P  V V   G + +         R+          KL  GS  
Sbjct: 10  SGQTVLP-FTGIDFRLSPSGVAVDSAGNVYVTSEGMYG--RVV---------KLATGSTG 57

Query: 66  GYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMAIRKISDSGVTTIAGGKWGRGGG 125
                 +G      +  P+GL VD  G +Y+ D  N  +   + S   T+          
Sbjct: 58  TTVLPFNG------LYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPF------- 104

Query: 126 HVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQL--HFDDCAYQYGSSFPLGI 183
                      +    +  + +  ++ V DRGN  + ++             G + P G+
Sbjct: 105 --------DGLNYPEGLA-VDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGV 155

Query: 184 AV 185
           AV
Sbjct: 156 AV 157

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Length = 270

 Score = 68.0 bits (167), Expect = 5e-13
 Identities = 30/162 (18%), Positives = 62/162 (38%), Gaps = 34/162 (20%)

Query: 3   KFESGYTVETVFDGSKLGIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAG 62
           K  +G   +TV   + L  +P  V V   G + + D+ N+ + ++ +     S  ++V  
Sbjct: 133 KLAAGSKTQTVLPFTGLN-DPDGVAVDNSGNVYVTDTDNNRVVKLEAE----SNNQVVLP 187

Query: 63  SAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMAIRKISDSGVTTIAGGKWGR 122
             +              +  P G+ VD+ G +Y+ +     + K+     T+      G 
Sbjct: 188 FTD--------------ITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTG- 232

Query: 123 GGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREI 164
               ++ P            V + S  ++ V DRGN  + ++
Sbjct: 233 ----LNTPLA----------VAVDSDRTVYVADRGNDRVVKL 260

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Length = 270

 Score = 57.6 bits (140), Expect = 2e-09
 Identities = 17/109 (15%), Positives = 38/109 (34%), Gaps = 19/109 (17%)

Query: 3   KFESGYTVETVFDGSKLGIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAG 62
           K E+    + V   + +   P+ + V   G + + +   + + ++ +     S    V  
Sbjct: 175 KLEAESNNQVVLPFTDIT-APWGIAVDEAGTVYVTEHNTNQVVKLLAG----STTSTVLP 229

Query: 63  SAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMAIRKISDSG 111
                            +N P  + VD    +Y+AD  N  + K++   
Sbjct: 230 FT--------------GLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLE 264

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300

 Score = 61.9 bits (151), Expect = 6e-11
 Identities = 26/179 (14%), Positives = 54/179 (30%), Gaps = 35/179 (19%)

Query: 9   TVETVFDGSKLGIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYS 68
                +D    G  P  + +     L   ++ N+++ RI+++           G  E Y 
Sbjct: 134 GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITNT-----------GKLEEYP 182

Query: 69  GHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMAIRKISDSGVTTIAGGKWGRGGGHVD 128
              +          P G+T  + G ++  + M   I +I+ +G  +              
Sbjct: 183 LPTNA-------AAPVGITSGNDGALWFVEIMGNKIGRITTTGEISEYDI--PTPNARPH 233

Query: 129 GPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQL--HFDDCAYQYGSSFPLGIAV 185
                         +  G +  +   + G   I  I       +   Q  ++ P GI  
Sbjct: 234 A-------------ITAGKNSEIWFTEWGANQIGRITNDNTIQEYQLQTENAEPHGITF 279

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300

 Score = 59.2 bits (144), Expect = 5e-10
 Identities = 25/176 (14%), Positives = 52/176 (29%), Gaps = 35/176 (19%)

Query: 12  TVFDGSKLGIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHV 71
             F+      +   + V   G++   ++  + + ++S                    G  
Sbjct: 53  KEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK------------------GGF 94

Query: 72  DGKPREARMNHPKGLTVDDRGNIYIADTMNMAIRKISDSGVTTIAGGKWGRGGGHVDGPS 131
              P     + P G+T    G+I+        I K++  G                    
Sbjct: 95  TEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTADGTIYEYDL------------- 141

Query: 132 EDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQL--HFDDCAYQYGSSFPLGIAV 185
              K S    +  +GS  +L   +  N +I  I      ++      ++ P+GI  
Sbjct: 142 -PNKGSYPAFIT-LGSDNALWFTENQNNSIGRITNTGKLEEYPLPTNAAAPVGITS 195

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300

 Score = 58.1 bits (141), Expect = 1e-09
 Identities = 18/179 (10%), Positives = 50/179 (27%), Gaps = 35/179 (19%)

Query: 9   TVETVFDGSKLGIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYS 68
              T +   +    PY +     G++         + ++++                   
Sbjct: 92  GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTA------------------D 133

Query: 69  GHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMAIRKISDSGVTTIAGGKWGRGGGHVD 128
           G +       + ++P  +T+     ++  +  N +I +I+++G                 
Sbjct: 134 GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITNTGKLEEYPL--PTNAAAPV 191

Query: 129 GPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQL--HFDDCAYQYGSSFPLGIAV 185
           G             +  G+  +L  ++     I  I       +      ++ P  I  
Sbjct: 192 G-------------ITSGNDGALWFVEIMGNKIGRITTTGEISEYDIPTPNARPHAITA 237

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 21/166 (12%), Positives = 42/166 (25%), Gaps = 37/166 (22%)

Query: 23  PYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNH 82
           PY +     G++       + +  +                    SG +           
Sbjct: 22  PYGITSSEDGKVWFTQHKANKISSLDQ------------------SGRIKEFEVPTPDAK 63

Query: 83  PKGLTVDDRGNIYIADTMNMAIRKIS-DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFD 141
              L V   G+I+  +     I K+S   G T     +         GP         + 
Sbjct: 64  VMCLIVSSLGDIWFTENGANKIGKLSKKGGFTEYPLPQPD------SGP---------YG 108

Query: 142 VVYIGSSCSLLVIDRGNRAIREI--QLHFDDCAYQYGSSFPLGIAV 185
           +   G +  +         I ++       +       S+P  I +
Sbjct: 109 IT-EGLNGDIWFTQLNGDRIGKLTADGTIYEYDLPNKGSYPAFITL 153

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300

 Score = 44.2 bits (105), Expect = 4e-05
 Identities = 14/121 (11%), Positives = 34/121 (28%), Gaps = 26/121 (21%)

Query: 12  TVFDGSKLGIEPYSVEVLPGGELLILDSANSNLYRISSSLSL--------YSRPKLVAGS 63
             +        P  +     G L  ++   + + RI+++  +         +RP  +   
Sbjct: 179 EEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTTGEISEYDIPTPNARPHAITAG 238

Query: 64  AEGY----------------SGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMAIRKI 107
                                  +     +     P G+T    G+++ A      I K+
Sbjct: 239 KNSEIWFTEWGANQIGRITNDNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKL 296

Query: 108 S 108
           +
Sbjct: 297 N 297

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score = 60.4 bits (147), Expect = 2e-10
 Identities = 30/177 (16%), Positives = 58/177 (32%), Gaps = 37/177 (20%)

Query: 12  TVFDGSKLGIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHV 71
           T +       +   + +   GE+   ++A + + RI+             G  + Y+   
Sbjct: 48  TEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-----------GIIKEYTLPN 96

Query: 72  DGKPREARMNHPKGLTVDDRGNIYIADTMNMAIRKISDSG-VTTIAGGKWGRGGGHVDGP 130
                    + P G+T    G+I+  +     I +I+D G +        G     +   
Sbjct: 97  PD-------SAPYGITEGPNGDIWFTEMNGNRIGRITDDGKIREYELPNKGSYPSFIT-- 147

Query: 131 SEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQYGS--SFPLGIAV 185
                         +GS  +L   +  N AI  I    D   ++  +  S P+GI  
Sbjct: 148 --------------LGSDNALWFTENQNNAIGRITESGDITEFKIPTPASGPVGITK 190

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score = 57.3 bits (139), Expect = 2e-09
 Identities = 22/181 (12%), Positives = 45/181 (24%), Gaps = 43/181 (23%)

Query: 8   YTVETVFDGSKLGIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGY 67
             +     G      PY + V   G++ I     + +  I+                   
Sbjct: 8   LNLTNQDTG------PYGITVSDKGKVWITQHKANMISCINLD----------------- 44

Query: 68  SGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMAIRKISDSG-VTTIAGGKWGRGGGH 126
            G +   P          LT+   G ++  +     I +I+  G +              
Sbjct: 45  -GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKGIIKEYTLPNPD----- 98

Query: 127 VDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQL--HFDDCAYQYGSSFPLGIA 184
              P         + +   G +  +   +     I  I       +       S+P  I 
Sbjct: 99  -SAP---------YGIT-EGPNGDIWFTEMNGNRIGRITDDGKIREYELPNKGSYPSFIT 147

Query: 185 V 185
           +
Sbjct: 148 L 148

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score = 54.3 bits (131), Expect = 2e-08
 Identities = 15/145 (10%), Positives = 38/145 (26%), Gaps = 32/145 (22%)

Query: 12  TVFDGSKLGIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHV 71
           T F        P  +       L  ++   + + RI++S                  G +
Sbjct: 174 TEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITTS------------------GEI 215

Query: 72  DGKPREARMNHPKGLTVDDRGNIYIADTMNMAIRKISDSGVTTIAGGKWGRGGGH---VD 128
                      P  +T     +++  +     I +++ + +      +      H    D
Sbjct: 216 TEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSNNIIEEYPIQIKSAEPHGICFD 275

Query: 129 GPSEDAKFSNDFDVVYIGSSCSLLV 153
           G           + ++    C  + 
Sbjct: 276 G-----------ETIWFAMECDKIG 289

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* Length = 329

 Score = 60.2 bits (146), Expect = 3e-10
 Identities = 27/168 (16%), Positives = 53/168 (31%), Gaps = 19/168 (11%)

Query: 8   YTVETVFDGSKLGI---EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSA 64
           + VE   D   + +   +   V +     L+I    +      S       + + +    
Sbjct: 8   FHVEEELDWPGVYLLPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIE 67

Query: 65  EG-------YSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMAIRKISDSG--VTTI 115
           E         +  +     +     P GL++D  GN ++ D     + K+         +
Sbjct: 68  EDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLL 127

Query: 116 AGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVID-RGNRAIR 162
             G+  + G      S+   F    DV    S+ ++ V D   N  I 
Sbjct: 128 ILGRSMQPG------SDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIV 169

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* Length = 329

 Score = 53.3 bits (128), Expect = 6e-08
 Identities = 15/120 (12%), Positives = 30/120 (25%), Gaps = 13/120 (10%)

Query: 72  DGKPREARMNHPKGLTVDDR-GNIYIADTMNMAIRKISDSGVTTIAGGKWGRGGGHVDGP 130
              PR  + + P  L +      + +AD  N  I+         +   K    G +V   
Sbjct: 187 GSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFA- 245

Query: 131 SEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQYGS-----SFPLGIAV 185
                 S     ++  +       D+       +     +    +         P  I  
Sbjct: 246 -----ISYIPGFLFAVNG-KPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVA 299

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* Length = 329

 Score = 47.5 bits (113), Expect = 4e-06
 Identities = 14/111 (12%), Positives = 31/111 (27%), Gaps = 21/111 (18%)

Query: 7   GYTVETVFDGSKLGIEPYSVEVLPG------GELLILDSANSNLYRISSSLSLYSRPKLV 60
                     +  G   +++  +PG      G+    D      + ++ S          
Sbjct: 227 TKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFS---------- 276

Query: 61  AGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMAIRKISDSG 111
           +G        V         + P  +   + G +YI D     + K + + 
Sbjct: 277 SGEIIDVFKPVRKH-----FDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Length = 286

 Score = 55.3 bits (134), Expect = 8e-09
 Identities = 30/185 (16%), Positives = 57/185 (30%), Gaps = 46/185 (24%)

Query: 2   MKFESGYTVETVFDGSKLGIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVA 61
           + F+    V   F  SK    P  V V    E+ I D+    +   +       +     
Sbjct: 145 IIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEG----QYLRQI 200

Query: 62  GSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMA-IRKISDSG--VTTIAGG 118
           G              E   N+P G+ ++  G I IAD  N   +   +  G  ++ +   
Sbjct: 201 GG-------------EGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALE-- 245

Query: 119 KWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQYGSS 178
                        +          V +    S+++  +  R    + +      Y+Y   
Sbjct: 246 ----SKVKHAQCFD----------VALMDDGSVVLASKDYR----LYI------YRYVQL 281

Query: 179 FPLGI 183
            P+G+
Sbjct: 282 APVGM 286

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Length = 286

 Score = 54.9 bits (133), Expect = 1e-08
 Identities = 22/111 (19%), Positives = 44/111 (39%), Gaps = 10/111 (9%)

Query: 77  EARMNHPKGLTVDDRGNIYIADTMNMAIRKISDSGVTTIAGGKWGRGGGHVDGPSEDAKF 136
           E +   P G+ V+ + +I +ADT N  I+     G      G+ G+    +  P+  A  
Sbjct: 26  EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVV 85

Query: 137 SNDFDVVYIGSSCS--LLVIDRGNRAIREIQLHFDDCAYQYGSSFPLGIAV 185
            N  D++    S +  + + ++  + +R+                P G+ V
Sbjct: 86  RNSGDIIVTERSPTHQIQIYNQYGQFVRKFGAT--------ILQHPRGVTV 128

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Length = 286

 Score = 51.0 bits (123), Expect = 2e-07
 Identities = 26/171 (15%), Positives = 60/171 (35%), Gaps = 39/171 (22%)

Query: 21  IEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARM 80
           + P  V V+     +I+   +   ++I     +Y++            G    K     +
Sbjct: 77  LYPNRVAVVRNSGDIIVTERSPT-HQIQ----IYNQ-----------YGQFVRKFGATIL 120

Query: 81  NHPKGLTVDDRGNIYIADTMNMAIRKISDSG--VTTIAGGKWGRGGGHVDGPSEDAKFSN 138
            HP+G+TVD++G I + +   M +     +G  +             H++ P+       
Sbjct: 121 QHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKF------GCSKHLEFPN------- 167

Query: 139 DFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQYGS----SFPLGIAV 185
               V +     + + D     ++    +      Q G     ++P+G+ +
Sbjct: 168 ---GVVVNDKQEIFISDNRAHCVKVFN-YEGQYLRQIGGEGITNYPIGVGI 214

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	426
3kya_A	496	Putative phosphatase; structural genomics, joint c	99.87
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	99.84
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.8
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	99.8
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.65
3kya_A	496	Putative phosphatase; structural genomics, joint c	99.62
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	99.62
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	99.62
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.6
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.57
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	99.52
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	99.49
3v65_B	386	Low-density lipoprotein receptor-related protein;	99.49
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.48
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	99.48
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	99.47
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	99.47
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.46
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	99.45
3v65_B	386	Low-density lipoprotein receptor-related protein;	99.45
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.45
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	99.44
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	99.42
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	99.42
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.42
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.41
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	99.41
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.4
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	99.38
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	99.37
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.35
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	99.34
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	99.33
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.29
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.29
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	99.27
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.27
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.22
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.21
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	99.21
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.2
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.2
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.18
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.17
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.14
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	99.13
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	99.09
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.09
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.0
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.0
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.96
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	98.94
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.92
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.89
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	98.87
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	98.85
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.84
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	98.83
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.82
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	98.82
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	98.82
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	98.77
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	98.7
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.69
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.61
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	98.56
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	98.55
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.52
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	98.5
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	98.5
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	98.49
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.39
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.38
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	98.34
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.32
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	98.29
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	98.26
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	98.24
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	98.22
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	98.21
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.2
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	98.19
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.18
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	98.18
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	98.17
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.16
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	98.09
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	98.01
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	97.95
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	97.92
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.89
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	97.82
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.78
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	97.75
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	97.74
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	97.73
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	97.69
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	97.54
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.53
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	97.51
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	97.5
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	97.49
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.41
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.39
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	97.35
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	97.35
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	97.3
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	97.27
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	97.23
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	97.22
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	97.22
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	97.15
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	97.13
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	97.05
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	97.04
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	96.86
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	96.81
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	96.73
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	96.7
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	96.6
2ece_A	462	462AA long hypothetical selenium-binding protein;	96.5
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.48
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	96.38
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	96.33
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	96.29
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	96.22
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	96.16
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	96.07
3ow8_A	321	WD repeat-containing protein 61; structural genomi	96.05
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	95.92
3ow8_A	321	WD repeat-containing protein 61; structural genomi	95.88
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	95.85
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	95.78
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	95.78
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	95.74
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	95.71
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	95.51
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	95.45
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	95.4
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	95.3
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	95.25
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	95.24
2ece_A	462	462AA long hypothetical selenium-binding protein;	95.22
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	95.19
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	95.19
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	95.07
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	95.05
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	94.89
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	94.77
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	94.72
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	94.56
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	94.49
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	94.46
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	94.38
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	94.32
3v9f_A	781	Two-component system sensor histidine kinase/RESP	94.31
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	94.29
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	94.26
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	94.23
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	94.15
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	94.01
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	94.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	93.93
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	93.89
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	93.83
3v9f_A	781	Two-component system sensor histidine kinase/RESP	93.73
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	93.7
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	93.6
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	93.47
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	93.47
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	93.38
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	93.37
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	93.36
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	93.32
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	93.23
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	92.81
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	92.76
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	92.75
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	92.7
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	92.7
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	92.67
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	92.62
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	92.6
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	92.57
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	92.54
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	92.51
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	92.44
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	92.41
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	92.35
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	92.31
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	92.27
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	92.25
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	92.09
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	92.07
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	91.98
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	91.94
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	91.91
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	91.9
4a2l_A	795	BT_4663, two-component system sensor histidine kin	91.74
3jrp_A	379	Fusion protein of protein transport protein SEC13	91.53
4a2l_A	795	BT_4663, two-component system sensor histidine kin	91.5
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	91.39
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	90.61
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	90.5
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	90.44
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	90.21
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	90.21
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	90.2
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	90.12
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	90.09
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	90.04
2pm7_B	297	Protein transport protein SEC13, protein transport	90.01
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	89.96
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	89.96
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	89.69
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	89.62
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	89.42
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	89.3
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	89.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	88.71
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	88.55
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	88.54
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	88.52
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	88.41
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	88.39
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	88.2
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	87.85
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	87.23
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	86.89
3ott_A	758	Two-component system sensor histidine kinase; beta	86.67
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	86.39
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	86.31
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	86.3
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	86.07
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	85.96
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	85.86
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	85.1
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	85.07
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	85.05
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	84.96
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	84.71
3jrp_A	379	Fusion protein of protein transport protein SEC13	84.44
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	84.1
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	84.02
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	83.62
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	83.59
3jro_A	753	Fusion protein of protein transport protein SEC13	83.55
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	83.03
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	82.47
3jro_A	753	Fusion protein of protein transport protein SEC13	82.35
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	82.1
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	82.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	81.96
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	81.57
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	81.57
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	80.98
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	80.21
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	80.12

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=99.87  E-value=5.7e-22  Score=208.45  Aligned_cols=149  Identities=26%  Similarity=0.337  Sum_probs=124.2

Q ss_pred             CceEEEEcCCCc-EEEEECCCCeEEEEeCCCCc--ccccEEEecCCCCcccccCCcccccccCCcc-eEEEc-------C
Q 014345           22 EPYSVEVLPGGE-LLILDSANSNLYRISSSLSL--YSRPKLVAGSAEGYSGHVDGKPREARMNHPK-GLTVD-------D   90 (426)
Q Consensus        22 ~P~GIaVd~dG~-LYVaD~~n~rI~kid~dg~~--~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~-GIaVd-------~   90 (426)
                      .|++||++++|+ |||+|+.+|+|++++.++..  .....+++|.. |..|..||.+..|+|++|. |++++       .
T Consensus       311 ~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~-g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~  389 (496)
T 3kya_A          311 WEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGY-KQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEE  389 (496)
T ss_dssp             CCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBT-TBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSC
T ss_pred             CceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCC-CCCcccCCcccccccCCCeEEEEEccccccccC
Confidence            699999999998 89999999999998877532  12247888874 5667778999999999999 89998       6


Q ss_pred             CCCEEEEECCCCEEEEEc-CCCcEEEeCCcc------CCCCCCCCC-CcccccCCCCCeeEEECCC-CeEEEEECCCCeE
Q 014345           91 RGNIYIADTMNMAIRKIS-DSGVTTIAGGKW------GRGGGHVDG-PSEDAKFSNDFDVVYIGSS-CSLLVIDRGNRAI  161 (426)
Q Consensus        91 dG~LYVADt~N~rIrk~d-~g~VstIaGg~~------g~~~G~~dG-~~~~a~f~~P~gIa~vd~~-G~LYVaDsgN~rI  161 (426)
                      +|+|||||+.|||||+|+ +|.++|++|...      +...|..+| ++..++|+.|++|+ ++++ |+|||+|++|+||
T Consensus       390 ~g~lyVaD~~N~rIr~i~~~G~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIa-vd~~~g~lyVaD~~N~rI  468 (496)
T 3kya_A          390 EYDFYFVDRLNFCVRKVTPEGIVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLV-YDDVKEMFYVHDQVGHTI  468 (496)
T ss_dssp             CEEEEEEEGGGTEEEEECTTCBEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEE-EETTTTEEEEEETTTTEE
T ss_pred             CCeEEEEECCCCEEEEEeCCCCEEEEecccccccccCccccccCCCCchhhhhcCCCcEEE-EECCCCEEEEEeCCCCEE
Confidence            899999999999999999 777999998522      122355677 88899999999999 5664 9999999999999


Q ss_pred             EEEEcCCCceE
Q 014345          162 REIQLHFDDCA  172 (426)
Q Consensus       162 r~I~l~~~~~~  172 (426)
                      |+|+++++.|.
T Consensus       469 rki~~~~~~~~  479 (496)
T 3kya_A          469 RTISMEQEENV  479 (496)
T ss_dssp             EEEEECCCC--
T ss_pred             EEEECCCCccc
Confidence            99999887664

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=99.84  E-value=3.4e-20  Score=190.68  Aligned_cols=144  Identities=24%  Similarity=0.367  Sum_probs=120.9

Q ss_pred             CceEEEEcCCCc-EEEEECCCCeEEEEeCCC--CcccccEEEecCCCCcccccCCcccccccCCcceEEE---------c
Q 014345           22 EPYSVEVLPGGE-LLILDSANSNLYRISSSL--SLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTV---------D   89 (426)
Q Consensus        22 ~P~GIaVd~dG~-LYVaD~~n~rI~kid~dg--~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaV---------d   89 (426)
                      .+.+|+++++|+ |||+|..+|+|++++.++  .....+.+++|.. +..|..+|.+..++|+.|.||++         |
T Consensus       274 ~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~-g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd  352 (433)
T 4hw6_A          274 SNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQH-SSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEE  352 (433)
T ss_dssp             SCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECT-TCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSS
T ss_pred             CcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecC-CCCccCCCcccceEEcCCccEEEEccccccccC
Confidence            567899999998 999999999999998763  2234567888873 55667788888999999999999         8


Q ss_pred             CCCCEEEEECCCCEEEEEc-CCCcEEEeCCccCCCCCCCCC-CcccccCCCCCeeEEEC-CCCeEEEEECCCCeEEEEEc
Q 014345           90 DRGNIYIADTMNMAIRKIS-DSGVTTIAGGKWGRGGGHVDG-PSEDAKFSNDFDVVYIG-SSCSLLVIDRGNRAIREIQL  166 (426)
Q Consensus        90 ~dG~LYVADt~N~rIrk~d-~g~VstIaGg~~g~~~G~~dG-~~~~a~f~~P~gIa~vd-~~G~LYVaDsgN~rIr~I~l  166 (426)
                      .+|+|||||+.|++|++++ +|.+.+++|.......|..+| .+..++|+.|++|+ ++ ++|+|||+|++|+||++|++
T Consensus       353 ~~g~lyvaD~~n~~I~~~~~~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~gia-vd~~~g~lyVaD~~n~rIr~i~~  431 (433)
T 4hw6_A          353 DEYDFYFCDRDSHTVRVLTPEGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIA-YDMKRKCFYIGDCDNHRVRKIAP  431 (433)
T ss_dssp             CCEEEEEEETTTTEEEEECTTSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEE-EETTTTEEEEEEGGGTEEEEEEE
T ss_pred             CCCcEEEEECCCCEEEEECCCCCEEEEEeCCCCCccccCCCccccccEeCCCcEEE-EECCCCEEEEEeCCCCEEEEEec
Confidence            9999999999999999999 677899998533222355666 77888999999999 56 89999999999999999987


Q ss_pred             C
Q 014345          167 H  167 (426)
Q Consensus       167 ~  167 (426)
                      +
T Consensus       432 e  432 (433)
T 4hw6_A          432 E  432 (433)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.80  E-value=9e-19  Score=177.93  Aligned_cols=138  Identities=27%  Similarity=0.412  Sum_probs=117.7

Q ss_pred             Cce-EEEEcC-CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEEC
Q 014345           22 EPY-SVEVLP-GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADT   99 (426)
Q Consensus        22 ~P~-GIaVd~-dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt   99 (426)
                      .|. +|++++ +|.|||+|..+++|++++.++    .+.+++|.. +..|..+|.+..++|+.|.||++|++|+|||||+
T Consensus       267 ~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g----~~~~~~g~~-~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~  341 (409)
T 3hrp_A          267 NPGPYLIYYFVDSNFYMSDQNLSSVYKITPDG----ECEWFCGSA-TQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDG  341 (409)
T ss_dssp             SSCCEEEEETTTTEEEEEETTTTEEEEECTTC----CEEEEEECT-TCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEET
T ss_pred             CccccEEEeCCCCEEEEEeCCCCEEEEEecCC----CEEEEEeCC-CCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeC
Confidence            477 999999 689999999999999999984    567888874 3556677888889999999999999999999999


Q ss_pred             -CCCEEEEEc--CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcC
Q 014345          100 -MNMAIRKIS--DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLH  167 (426)
Q Consensus       100 -~N~rIrk~d--~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~  167 (426)
                       .|++|++++  ++.+.+++|....  .|..+|.+..+.|..|++|+ ++++|+|||+|++|++|++|+++
T Consensus       342 ~~~~~I~~~~~~~G~v~~~~g~~~~--~g~~~g~~~~~~~~~P~gia-vd~~g~lyVad~~n~~Ir~i~~e  409 (409)
T 3hrp_A          342 FKGYCLRKLDILDGYVSTVAGQVDV--ASQIDGTPLEATFNYPYDIC-YDGEGGYWIAEAWGKAIRKYAVE  409 (409)
T ss_dssp             TTTCEEEEEETTTTEEEEEEECTTC--BSCCCBSTTTCCBSSEEEEE-ECSSSEEEEEESTTCEEEEEEEC
T ss_pred             CCCCEEEEEECCCCEEEEEeCCCCC--CCcCCCChhceEeCCceEEE-EcCCCCEEEEECCCCeEEEEEeC
Confidence             999999999  4558888874221  34556777888999999999 68889999999999999999863

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=99.80  E-value=3.1e-19  Score=183.00  Aligned_cols=144  Identities=29%  Similarity=0.451  Sum_probs=119.0

Q ss_pred             CCceEEEEcCCCc-EEEEECCCCeEEEEeCCCC--cccccEEEecCCCCcccccCCcccccccCCcc-eEEEc-------
Q 014345           21 IEPYSVEVLPGGE-LLILDSANSNLYRISSSLS--LYSRPKLVAGSAEGYSGHVDGKPREARMNHPK-GLTVD-------   89 (426)
Q Consensus        21 ~~P~GIaVd~dG~-LYVaD~~n~rI~kid~dg~--~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~-GIaVd-------   89 (426)
                      ..|.+|+++++|+ |||+|..+++|++++.++.  ....+.+++|.. +..|..+|.+..++|++|. |++++       
T Consensus       270 ~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~-g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~  348 (430)
T 3tc9_A          270 GWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQ-GAKDWVDGVGKKARMHAPRQGTFVKNPAYKGS  348 (430)
T ss_dssp             SCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECT-TCBCCBCEEGGGCBBSSEEEEEEEECGGGTTS
T ss_pred             CcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccC-CCCCCCCCCCcceEeCCCcceEEEcccccccc
Confidence            3799999999999 9999999999999988752  223467888864 5566667888889999999 89994       


Q ss_pred             -CCCCEEEEECCCCEEEEEc-CCCcEEEeCCcc-CCCCCCCCC-CcccccCCCCCeeEEECC-CCeEEEEECCCCeEEEE
Q 014345           90 -DRGNIYIADTMNMAIRKIS-DSGVTTIAGGKW-GRGGGHVDG-PSEDAKFSNDFDVVYIGS-SCSLLVIDRGNRAIREI  164 (426)
Q Consensus        90 -~dG~LYVADt~N~rIrk~d-~g~VstIaGg~~-g~~~G~~dG-~~~~a~f~~P~gIa~vd~-~G~LYVaDsgN~rIr~I  164 (426)
                       ++|+|||||+.|++|++++ +|.+.+++|... +. .|..+| ++..++|+.|++|+ +++ ++.|||+|++|++|++|
T Consensus       349 D~~g~lyvaD~~n~~I~~i~~~G~v~~~~g~g~~~~-~G~~dG~~~~~~~~~~P~gia-vd~~~g~lyVaD~~n~rIr~i  426 (430)
T 3tc9_A          349 SDEYDFYFCDRENHCIRILTPQGRVTTFAGRGSNGT-SGYNDGDLRQEARFNHPEGIV-YDEERECFFIGDRENRRIRKI  426 (430)
T ss_dssp             SCCEEEEEEEGGGTEEEEECTTSEEEEEEECCTTSS-SSCBCEETTTTCBCSSEEEEE-EETTTTEEEEEEGGGTEEEEE
T ss_pred             CCCCeEEEEECCCcEEEEECCCCcEEEEEeCCCCCC-CcccCCCchhhcEeCCCcEEE-EECCCCEEEEEECCCCeEEEE
Confidence             6699999999999999999 677889988422 22 344466 77888999999999 566 79999999999999999


Q ss_pred             EcC
Q 014345          165 QLH  167 (426)
Q Consensus       165 ~l~  167 (426)
                      +++
T Consensus       427 ~~e  429 (430)
T 3tc9_A          427 GYE  429 (430)
T ss_dssp             EEC
T ss_pred             ccC
Confidence            875

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.65  E-value=1.4e-14  Score=140.71  Aligned_cols=136  Identities=18%  Similarity=0.252  Sum_probs=102.1

Q ss_pred             CCCCCceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcC-CCCEEE
Q 014345           18 KLGIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD-RGNIYI   96 (426)
Q Consensus        18 ~l~~~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~-dG~LYV   96 (426)
                      ..+..|.+|+++++|+|||+|..+++|++++.++.. ..+..+...  +..|..     ...|+.|.+|++++ +|+|||
T Consensus        88 ~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~-~~~~~~~~~--~~~g~~-----~~~~~~P~~ia~~~~~g~lyv  159 (329)
T 3fvz_A           88 NLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKE-GPLLILGRS--MQPGSD-----QNHFCQPTDVAVEPSTGAVFV  159 (329)
T ss_dssp             TTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSS-CCSEEESBT--TBCCCS-----TTCCSSEEEEEECTTTCCEEE
T ss_pred             CccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCe-EEEEEeccc--CCCCCC-----ccccCCCcEEEEeCCCCeEEE
Confidence            334589999999999999999999999999998642 123444322  223321     23588999999999 899999


Q ss_pred             EEC-CCCEEEEEc-CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCC-CeEEEEECCCCeEEEEEcCC
Q 014345           97 ADT-MNMAIRKIS-DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSS-CSLLVIDRGNRAIREIQLHF  168 (426)
Q Consensus        97 ADt-~N~rIrk~d-~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~-G~LYVaDsgN~rIr~I~l~~  168 (426)
                      ||+ .+++|++++ ++.+...++.. +.     ......+.|..|.+|+ ++++ ++|||+|.++++|++++++.
T Consensus       160 ~d~~~~~~I~~~~~~g~~~~~~~~~-g~-----~~~~~~~~~~~p~gia-~d~~~g~l~v~d~~~~~I~~~~~~~  227 (329)
T 3fvz_A          160 SDGYCNSRIVQFSPSGKFVTQWGEE-SS-----GSSPRPGQFSVPHSLA-LVPHLDQLCVADRENGRIQCFKTDT  227 (329)
T ss_dssp             EECSSCCEEEEECTTSCEEEEECEE-CC-----SSSCCTTEESCEEEEE-EETTTTEEEEEETTTTEEEEEETTT
T ss_pred             EeCCCCCeEEEEcCCCCEEEEeccC-CC-----CCCCCCcccCCCcEEE-EECCCCEEEEEECCCCEEEEEECCC
Confidence            997 799999999 66655554421 11     0122345788999999 5666 99999999999999999983

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=99.62  E-value=3.5e-15  Score=156.90  Aligned_cols=132  Identities=17%  Similarity=0.188  Sum_probs=99.8

Q ss_pred             CCceEEEEcC-CCcEEEEECCCCeEEEEeCC-------CCcccc---------cEEEecCCCCcccccCCcccccccCCc
Q 014345           21 IEPYSVEVLP-GGELLILDSANSNLYRISSS-------LSLYSR---------PKLVAGSAEGYSGHVDGKPREARMNHP   83 (426)
Q Consensus        21 ~~P~GIaVd~-dG~LYVaD~~n~rI~kid~d-------g~~~g~---------v~~vaG~~~G~~G~~dG~a~~A~Ln~P   83 (426)
                      ..|+++++++ +|.|||+|..+++|++++.+       +.....         ...++..              ..-..|
T Consensus       247 ~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~--------------~~~~~p  312 (496)
T 3kya_A          247 KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTI--------------ADPSWE  312 (496)
T ss_dssp             SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEEC--------------SSSSCC
T ss_pred             CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEec--------------CCCCCc
Confidence            3799999999 78899999999999999986       221100         0111100              012358


Q ss_pred             ceEEEcCCCC-EEEEECCCCEEEEEc-CCCc------EEEeCCccCCCCCCCCCCcccccCCCCCeeEEEC-------CC
Q 014345           84 KGLTVDDRGN-IYIADTMNMAIRKIS-DSGV------TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIG-------SS  148 (426)
Q Consensus        84 ~GIaVd~dG~-LYVADt~N~rIrk~d-~g~V------stIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd-------~~  148 (426)
                      .+||++++|+ |||||+.||+|++++ ++..      .+++|.. +. .|+.||++..++|+.|.++++++       .+
T Consensus       313 ~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~-g~-~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~  390 (496)
T 3kya_A          313 FQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGY-KQ-SGYRDDVGTEARMNNPCQGVFVKNPDYTGEEE  390 (496)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBT-TB-CCCBCCBGGGCBCSSEEEEEEEECTTCCSSCC
T ss_pred             eEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCC-CC-CcccCCcccccccCCCeEEEEEccccccccCC
Confidence            9999999998 899999999999988 4432      5777742 22 45568899999999999444466       68


Q ss_pred             CeEEEEECCCCeEEEEEcCC
Q 014345          149 CSLLVIDRGNRAIREIQLHF  168 (426)
Q Consensus       149 G~LYVaDsgN~rIr~I~l~~  168 (426)
                      |+|||||++|||||+|++++
T Consensus       391 g~lyVaD~~N~rIr~i~~~G  410 (496)
T 3kya_A          391 YDFYFVDRLNFCVRKVTPEG  410 (496)
T ss_dssp             EEEEEEEGGGTEEEEECTTC
T ss_pred             CeEEEEECCCCEEEEEeCCC
Confidence            99999999999999999766

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=99.62  E-value=6.4e-15  Score=151.38  Aligned_cols=129  Identities=12%  Similarity=0.167  Sum_probs=101.4

Q ss_pred             CCceEEEEcC-CCcEEEEECCCCeEEEEeCCCCccccc-EEEecCCCCcccccCCcccccccCCcceEEEcCCCC-EEEE
Q 014345           21 IEPYSVEVLP-GGELLILDSANSNLYRISSSLSLYSRP-KLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIA   97 (426)
Q Consensus        21 ~~P~GIaVd~-dG~LYVaD~~n~rI~kid~dg~~~g~v-~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~-LYVA   97 (426)
                      ..|.+|++++ +|+|||+|..+++|++++.++   +.+ ..+....         .     ...+.+|+++++|+ |||+
T Consensus       228 ~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~---g~~~~~~~~~~---------~-----~~~~~~ia~dpdG~~LYva  290 (433)
T 4hw6_A          228 RGAKTCAVHPQNGKIYYTRYHHAMISSYDPAT---GTLTEEEVMMD---------T-----KGSNFHIVWHPTGDWAYII  290 (433)
T ss_dssp             SSBCCCEECTTTCCEEECBTTCSEEEEECTTT---CCEEEEEEECS---------C-----CSSCEEEEECTTSSEEEEE
T ss_pred             CCCCEEEEeCCCCeEEEEECCCCEEEEEECCC---CeEEEEEeccC---------C-----CCCcccEEEeCCCCEEEEE
Confidence            4799999999 899999999999999999973   233 3333221         0     12356899999998 9999


Q ss_pred             ECCCCEEEEEc-C---CC---cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEE--------CCCCeEEEEECCCCeEE
Q 014345           98 DTMNMAIRKIS-D---SG---VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYI--------GSSCSLLVIDRGNRAIR  162 (426)
Q Consensus        98 Dt~N~rIrk~d-~---g~---VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~v--------d~~G~LYVaDsgN~rIr  162 (426)
                      |..+++|++++ +   +.   +.+++|.. +. .|..+|.+..+.|+.|.+|+++        +.+|+|||+|++|++|+
T Consensus       291 d~~~~~I~~~~~d~~~~~~~~~~~~ag~~-g~-~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~  368 (433)
T 4hw6_A          291 YNGKHCIYRVDYNRETGKLAVPYIVCGQH-SS-PGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVR  368 (433)
T ss_dssp             ETTTTEEEEEEBCTTTCCBCCCEEEEECT-TC-CCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEE
T ss_pred             eCCCCEEEEEeCCCCCcccCcEEEEEecC-CC-CccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEE
Confidence            99999999988 3   22   35677641 11 3556777888999999999942        88999999999999999


Q ss_pred             EEEcCC
Q 014345          163 EIQLHF  168 (426)
Q Consensus       163 ~I~l~~  168 (426)
                      +|++++
T Consensus       369 ~~~~~G  374 (433)
T 4hw6_A          369 VLTPEG  374 (433)
T ss_dssp             EECTTS
T ss_pred             EECCCC
Confidence            999765

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=99.62  E-value=6.4e-15  Score=150.95  Aligned_cols=147  Identities=18%  Similarity=0.188  Sum_probs=110.5

Q ss_pred             CCceEEEEcC-CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCC-EEEEE
Q 014345           21 IEPYSVEVLP-GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIAD   98 (426)
Q Consensus        21 ~~P~GIaVd~-dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~-LYVAD   98 (426)
                      ..|++|++++ +|.|||+|..+++|++++.++.   ....+....              ....|++|+++++|+ |||+|
T Consensus       226 ~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~---~~~~~~~~~--------------~~~~P~gia~~pdG~~lyv~d  288 (430)
T 3tc9_A          226 QNCNGAETHPINGELYFNSWNAGQVFRYDFTTQ---ETTPLFTIQ--------------DSGWEFHIQFHPSGNYAYIVV  288 (430)
T ss_dssp             SSCCCEEECTTTCCEEEEETTTTEEEEEETTTT---EEEEEEECS--------------SSSCCEEEEECTTSSEEEEEE
T ss_pred             CCceEEEEeCCCCEEEEEECCCCEEEEEECCCC---cEEEEEEcC--------------CCCcceeEEEcCCCCEEEEEE
Confidence            4799999999 8999999999999999999853   222332211              024699999999999 99999


Q ss_pred             CCCCEEEEEc-CCC------cEEEeCCccCCCCCCCCCCcccccCCCCC-eeEEE--------CCCCeEEEEECCCCeEE
Q 014345           99 TMNMAIRKIS-DSG------VTTIAGGKWGRGGGHVDGPSEDAKFSNDF-DVVYI--------GSSCSLLVIDRGNRAIR  162 (426)
Q Consensus        99 t~N~rIrk~d-~g~------VstIaGg~~g~~~G~~dG~~~~a~f~~P~-gIa~v--------d~~G~LYVaDsgN~rIr  162 (426)
                      ..+++|++++ ++.      +.+++|.. +. .|..+|.+..+.|+.|. +++ +        |++|+|||+|++|++|+
T Consensus       289 ~~~~~I~~~~~d~~~~~~~~~~~~ag~~-g~-~g~~dg~~~~a~~~~P~~gv~-v~~~~y~~~D~~g~lyvaD~~n~~I~  365 (430)
T 3tc9_A          289 VNQHYILRSDYDWKTKRLTTPYIVCGQQ-GA-KDWVDGVGKKARMHAPRQGTF-VKNPAYKGSSDEYDFYFCDRENHCIR  365 (430)
T ss_dssp             TTTTEEEEEEEETTTTEECCCEEEEECT-TC-BCCBCEEGGGCBBSSEEEEEE-EECGGGTTSSCCEEEEEEEGGGTEEE
T ss_pred             CCCCEEEEEeCCcccccccceEEEeccC-CC-CCCCCCCCcceEeCCCcceEE-EccccccccCCCCeEEEEECCCcEEE
Confidence            9999999998 442      45677632 11 34456777788999999 676 6        56799999999999999


Q ss_pred             EEEcCCCceEeec------------------CCCCcceEEEEe
Q 014345          163 EIQLHFDDCAYQY------------------GSSFPLGIAVLL  187 (426)
Q Consensus       163 ~I~l~~~~~~~~~------------------~~g~P~GIAv~~  187 (426)
                      +|+.++...+...                  .+..|.|||++.
T Consensus       366 ~i~~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~  408 (430)
T 3tc9_A          366 ILTPQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDE  408 (430)
T ss_dssp             EECTTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEET
T ss_pred             EECCCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEEC
Confidence            9997653222211                  123699999985

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.60  E-value=4.3e-14  Score=143.40  Aligned_cols=152  Identities=19%  Similarity=0.191  Sum_probs=115.0

Q ss_pred             CCCceEEEEcC-CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcc-eEEEcC-CCCEEE
Q 014345           20 GIEPYSVEVLP-GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPK-GLTVDD-RGNIYI   96 (426)
Q Consensus        20 ~~~P~GIaVd~-dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~-GIaVd~-dG~LYV   96 (426)
                      +..|+++++++ +|.|||+|. +++|++++.++   +...++++..  ..+. .       -..|. +|++++ +|.|||
T Consensus       218 ~~~p~~iav~p~~g~lyv~d~-~~~I~~~d~~~---~~~~~~~~~~--~~g~-~-------~~~P~~~ia~~p~~g~lyv  283 (409)
T 3hrp_A          218 SGKIGAVALDETEEWLYFVDS-NKNFGRFNVKT---QEVTLIKQLE--LSGS-L-------GTNPGPYLIYYFVDSNFYM  283 (409)
T ss_dssp             CSCCCBCEECTTSSEEEEECT-TCEEEEEETTT---CCEEEEEECC--CCSC-C-------CCSSCCEEEEETTTTEEEE
T ss_pred             cCCcEEEEEeCCCCeEEEEEC-CCcEEEEECCC---CCEEEEeccc--ccCC-C-------CCCccccEEEeCCCCEEEE
Confidence            45799999999 899999886 78999999985   3345554431  1111 1       12377 999999 689999


Q ss_pred             EECCCCEEEEEc-CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEEC-CCCeEEEEEcCCCceEee
Q 014345           97 ADTMNMAIRKIS-DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDR-GNRAIREIQLHFDDCAYQ  174 (426)
Q Consensus        97 ADt~N~rIrk~d-~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDs-gN~rIr~I~l~~~~~~~~  174 (426)
                      +|..+++|++++ ++.+.+++|....  .|..+|.+..+.|..|.+|+ ++++|+|||+|+ ++++|+++++........
T Consensus       284 ~d~~~~~I~~~~~~g~~~~~~g~~~~--~g~~dg~~~~~~~~~P~gia-~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~  360 (409)
T 3hrp_A          284 SDQNLSSVYKITPDGECEWFCGSATQ--KTVQDGLREEALFAQPNGMT-VDEDGNFYIVDGFKGYCLRKLDILDGYVSTV  360 (409)
T ss_dssp             EETTTTEEEEECTTCCEEEEEECTTC--CSCBCEEGGGCBCSSEEEEE-ECTTCCEEEEETTTTCEEEEEETTTTEEEEE
T ss_pred             EeCCCCEEEEEecCCCEEEEEeCCCC--CCcCCCcccccEeCCCeEEE-EeCCCCEEEEeCCCCCEEEEEECCCCEEEEE
Confidence            999999999999 7778888874311  35566777788999999999 789999999999 999999999544333322


Q ss_pred             cC----------------CCCcceEEEEec
Q 014345          175 YG----------------SSFPLGIAVLLA  188 (426)
Q Consensus       175 ~~----------------~g~P~GIAv~~g  188 (426)
                      .+                +..|.|||++..
T Consensus       361 ~g~~~~~g~~~g~~~~~~~~~P~giavd~~  390 (409)
T 3hrp_A          361 AGQVDVASQIDGTPLEATFNYPYDICYDGE  390 (409)
T ss_dssp             EECTTCBSCCCBSTTTCCBSSEEEEEECSS
T ss_pred             eCCCCCCCcCCCChhceEeCCceEEEEcCC
Confidence            21                356889998853

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.57  E-value=9.9e-14  Score=134.65  Aligned_cols=143  Identities=18%  Similarity=0.242  Sum_probs=105.2

Q ss_pred             CCCceEEEEcCCCcEEEEECCCC------------------------eEEEEeCCCCcccccEEEecCCCCcccccCCcc
Q 014345           20 GIEPYSVEVLPGGELLILDSANS------------------------NLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKP   75 (426)
Q Consensus        20 ~~~P~GIaVd~dG~LYVaD~~n~------------------------rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a   75 (426)
                      +..|.+||++++|+|||++..++                        +|++++.+.   +++....+.            
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~---g~~~~~~~~------------   87 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNN---AEILQSSGK------------   87 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTT---CCEEEEECT------------
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCC---CeEEeccCC------------
Confidence            34899999999999999999884                        588888763   333333332            


Q ss_pred             cccccCCcceEEEcCCCCEEEEECCCCEEEEEc-CCC---cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECC-CCe
Q 014345           76 REARMNHPKGLTVDDRGNIYIADTMNMAIRKIS-DSG---VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGS-SCS  150 (426)
Q Consensus        76 ~~A~Ln~P~GIaVd~dG~LYVADt~N~rIrk~d-~g~---VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~-~G~  150 (426)
                        ..|+.|.||++|++|+|||+|..+++|++++ ++.   +.++ +... . .|.     ....|..|.+|+ +++ ++.
T Consensus        88 --~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~-~~~~-~-~g~-----~~~~~~~P~~ia-~~~~~g~  156 (329)
T 3fvz_A           88 --NLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLIL-GRSM-Q-PGS-----DQNHFCQPTDVA-VEPSTGA  156 (329)
T ss_dssp             --TTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEE-SBTT-B-CCC-----STTCCSSEEEEE-ECTTTCC
T ss_pred             --CccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEe-cccC-C-CCC-----CccccCCCcEEE-EeCCCCe
Confidence              2378899999999999999999999999999 555   3333 3211 1 111     234688999999 677 899


Q ss_pred             EEEEEC-CCCeEEEEEcCCCceEeec-----------CCCCcceEEEEec
Q 014345          151 LLVIDR-GNRAIREIQLHFDDCAYQY-----------GSSFPLGIAVLLA  188 (426)
Q Consensus       151 LYVaDs-gN~rIr~I~l~~~~~~~~~-----------~~g~P~GIAv~~g  188 (426)
                      |||+|. ++++|++++.++.......           ....|.+||++..
T Consensus       157 lyv~d~~~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~  206 (329)
T 3fvz_A          157 VFVSDGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPH  206 (329)
T ss_dssp             EEEEECSSCCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETT
T ss_pred             EEEEeCCCCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECC
Confidence            999997 8999999997765443322           1234899999853

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=99.52  E-value=4.2e-13  Score=133.42  Aligned_cols=132  Identities=18%  Similarity=0.171  Sum_probs=103.7

Q ss_pred             CceEEEEcC-CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcC-CCCEEEEEC
Q 014345           22 EPYSVEVLP-GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD-RGNIYIADT   99 (426)
Q Consensus        22 ~P~GIaVd~-dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~-dG~LYVADt   99 (426)
                      .|.|||+|. +|+||++|..+++|.+++.+|..   ..+++.               ..|..|+||++|+ +|.||++|.
T Consensus       117 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~---~~~l~~---------------~~l~~P~~iavdp~~g~ly~td~  178 (349)
T 3v64_C          117 SPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH---RKVLLW---------------QSLEKPRAIALHPMEGTIYWTDW  178 (349)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSCS---CEEEEC---------------TTCSCEEEEEEETTTTEEEEEEC
T ss_pred             CccEEEEecCCCeEEEEcCCCCeEEEEcCCCCc---eEEEEe---------------CCCCCcceEEEecCcCeEEEecc
Confidence            799999997 78899999999999999998642   233321               1277899999997 688999999


Q ss_pred             CC-CEEEEEc-CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceEe--ec
Q 014345          100 MN-MAIRKIS-DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAY--QY  175 (426)
Q Consensus       100 ~N-~rIrk~d-~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~~~--~~  175 (426)
                      .+ ++|.+++ +|...+....               ..+..|++|++...++.||++|+++++|.++++++.....  ..
T Consensus       179 ~~~~~I~r~~~dG~~~~~~~~---------------~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~  243 (349)
T 3v64_C          179 GNTPRIEASSMDGSGRRIIAD---------------THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQ  243 (349)
T ss_dssp             SSSCEEEEEETTSCSCEESCC---------------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS
T ss_pred             CCCCEEEEEeCCCCCcEEEEE---------------CCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeC
Confidence            98 9999999 6664443321               1366899999544688999999999999999998755432  34


Q ss_pred             CCCCcceEEEE
Q 014345          176 GSSFPLGIAVL  186 (426)
Q Consensus       176 ~~g~P~GIAv~  186 (426)
                      ..+.|.|||+.
T Consensus       244 ~~~~P~giav~  254 (349)
T 3v64_C          244 GLPHPFAITVF  254 (349)
T ss_dssp             SCSSEEEEEEE
T ss_pred             CCCCceEEEEE
Confidence            45789999995

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=99.49  E-value=9.8e-13  Score=128.50  Aligned_cols=134  Identities=16%  Similarity=0.071  Sum_probs=102.8

Q ss_pred             CCceEEEEcC-CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcC-CCCEEEEE
Q 014345           21 IEPYSVEVLP-GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD-RGNIYIAD   98 (426)
Q Consensus        21 ~~P~GIaVd~-dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~-dG~LYVAD   98 (426)
                      ..|.|||+|. +|+||++|..+++|.+++.+|..   ..+++..               .+..|+||++|+ +|.||++|
T Consensus        77 ~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~---~~~~~~~---------------~~~~P~~iavdp~~g~ly~~d  138 (316)
T 1ijq_A           77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK---RKTLFRE---------------NGSKPRAIVVDPVHGFMYWTD  138 (316)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSS---EEEEEEC---------------TTCCEEEEEEETTTTEEEEEE
T ss_pred             CCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCc---eEEEEEC---------------CCCCcceEEeCCCCCEEEEEc
Confidence            3799999996 77899999999999999998632   2333211               267899999997 68899999


Q ss_pred             CCC-CEEEEEc-CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceEee--
Q 014345           99 TMN-MAIRKIS-DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQ--  174 (426)
Q Consensus        99 t~N-~rIrk~d-~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~~~~--  174 (426)
                      .++ ++|.+++ +|...++...               ..+..|++|++...++.||++|+.+++|.++++++......  
T Consensus       139 ~~~~~~I~~~~~dG~~~~~~~~---------------~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~  203 (316)
T 1ijq_A          139 WGTPAKIKKGGLNGVDIYSLVT---------------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILE  203 (316)
T ss_dssp             CSSSCEEEEEETTSCCEEEEEC---------------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEE
T ss_pred             cCCCCeEEEEcCCCCCeEEEEE---------------CCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEee
Confidence            986 8999999 7665433321               13668999995446789999999999999999987544332  


Q ss_pred             --cCCCCcceEEEEe
Q 014345          175 --YGSSFPLGIAVLL  187 (426)
Q Consensus       175 --~~~g~P~GIAv~~  187 (426)
                        .....|.||+++.
T Consensus       204 ~~~~~~~P~giav~~  218 (316)
T 1ijq_A          204 DEKRLAHPFSLAVFE  218 (316)
T ss_dssp             CTTTTSSEEEEEEET
T ss_pred             cCCccCCcEEEEEEC
Confidence              1346799999973

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=99.49  E-value=6e-13  Score=134.04  Aligned_cols=132  Identities=19%  Similarity=0.167  Sum_probs=103.4

Q ss_pred             CceEEEEcC-CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcC-CCCEEEEEC
Q 014345           22 EPYSVEVLP-GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD-RGNIYIADT   99 (426)
Q Consensus        22 ~P~GIaVd~-dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~-dG~LYVADt   99 (426)
                      .|.|||+|+ .|+||++|..+++|.+++.+|..   ..+++..               .|..|+||++|+ +|.||++|.
T Consensus       160 ~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~---~~~l~~~---------------~l~~P~giavdp~~g~ly~td~  221 (386)
T 3v65_B          160 SPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH---RKVLLWQ---------------SLEKPRAIALHPMEGTIYWTDW  221 (386)
T ss_dssp             CCCCEEEETTTTEEEEEETTTTEEEECBTTSCS---CEEEECS---------------SCSCEEEEEEETTTTEEEEEEC
T ss_pred             CccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCc---eEEeecC---------------CCCCCcEEEEEcCCCeEEEecc
Confidence            799999997 68899999999999999998632   2333211               277899999996 678999999


Q ss_pred             CC-CEEEEEc-CCCc-EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceEe--e
Q 014345          100 MN-MAIRKIS-DSGV-TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAY--Q  174 (426)
Q Consensus       100 ~N-~rIrk~d-~g~V-stIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~~~--~  174 (426)
                      .+ ++|.+++ +|.. .++...                .+..|++|++...++.||++|+.+++|.++++++.....  .
T Consensus       222 ~~~~~I~r~~~dG~~~~~~~~~----------------~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~  285 (386)
T 3v65_B          222 GNTPRIEASSMDGSGRRIIADT----------------HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVIS  285 (386)
T ss_dssp             SSSCEEEEEETTSCSCEEEECS----------------SCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEEC
T ss_pred             CCCCEEEEEeCCCCCcEEEEEC----------------CCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEE
Confidence            98 9999999 6664 344321                266899999543788999999999999999998755432  3


Q ss_pred             cCCCCcceEEEEe
Q 014345          175 YGSSFPLGIAVLL  187 (426)
Q Consensus       175 ~~~g~P~GIAv~~  187 (426)
                      ...+.|.||+++.
T Consensus       286 ~~~~~P~giav~~  298 (386)
T 3v65_B          286 QGLPHPFAITVFE  298 (386)
T ss_dssp             SSCSSEEEEEEET
T ss_pred             CCCCCceEEEEEC
Confidence            3456899999953

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.48  E-value=3.7e-12  Score=119.20  Aligned_cols=134  Identities=16%  Similarity=0.226  Sum_probs=101.1

Q ss_pred             CCceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECC
Q 014345           21 IEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTM  100 (426)
Q Consensus        21 ~~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~  100 (426)
                      ..|++|+++++|+|||++..+++|++++.++    ......+..             ..+..|.+|+++++|+|||+|..
T Consensus       121 ~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g----~~~~~~~~~-------------~~~~~p~~i~~~~~g~l~v~~~~  183 (286)
T 1q7f_A          121 QHPRGVTVDNKGRIIVVECKVMRVIIFDQNG----NVLHKFGCS-------------KHLEFPNGVVVNDKQEIFISDNR  183 (286)
T ss_dssp             SCEEEEEECTTSCEEEEETTTTEEEEECTTS----CEEEEEECT-------------TTCSSEEEEEECSSSEEEEEEGG
T ss_pred             CCceEEEEeCCCCEEEEECCCCEEEEEcCCC----CEEEEeCCC-------------CccCCcEEEEECCCCCEEEEECC
Confidence            4799999999999999999999999999874    222222221             12667999999999999999999


Q ss_pred             CCEEEEEc-CCCc-EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCC-eEEEEEcCCCceEeec--
Q 014345          101 NMAIRKIS-DSGV-TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNR-AIREIQLHFDDCAYQY--  175 (426)
Q Consensus       101 N~rIrk~d-~g~V-stIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~-rIr~I~l~~~~~~~~~--  175 (426)
                      +++|++++ ++.. .++...               ..+..|.+|+ ++++|+|||++.+++ +|.+++..+.......  
T Consensus       184 ~~~i~~~~~~g~~~~~~~~~---------------g~~~~p~~i~-~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~  247 (286)
T 1q7f_A          184 AHCVKVFNYEGQYLRQIGGE---------------GITNYPIGVG-INSNGEILIADNHNNFNLTIFTQDGQLISALESK  247 (286)
T ss_dssp             GTEEEEEETTCCEEEEESCT---------------TTSCSEEEEE-ECTTCCEEEEECSSSCEEEEECTTSCEEEEEEES
T ss_pred             CCEEEEEcCCCCEEEEEccC---------------CccCCCcEEE-ECCCCCEEEEeCCCCEEEEEECCCCCEEEEEccc
Confidence            99999999 5553 333221               1256799998 688999999999886 9999998765433221  


Q ss_pred             -CCCCcceEEEEe
Q 014345          176 -GSSFPLGIAVLL  187 (426)
Q Consensus       176 -~~g~P~GIAv~~  187 (426)
                       ....|.+|+++.
T Consensus       248 ~~~~~~~~i~~~~  260 (286)
T 1q7f_A          248 VKHAQCFDVALMD  260 (286)
T ss_dssp             SCCSCEEEEEEET
T ss_pred             CCCCcceeEEECC
Confidence             123477888874

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=99.48  E-value=8.2e-13  Score=133.92  Aligned_cols=133  Identities=16%  Similarity=0.099  Sum_probs=103.2

Q ss_pred             CceEEEEcC-CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcC-CCCEEEEEC
Q 014345           22 EPYSVEVLP-GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD-RGNIYIADT   99 (426)
Q Consensus        22 ~P~GIaVd~-dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~-dG~LYVADt   99 (426)
                      .|.|||||. .++||++|..+++|.+++.+|..   ..+++..               .|..|+||++|+ .|.||++|.
T Consensus       160 ~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~---~~~l~~~---------------~~~~P~~iavdp~~g~ly~td~  221 (400)
T 3p5b_L          160 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK---RKTLFRE---------------NGSKPRAIVVDPVHGFMYWTDW  221 (400)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEECTTTCS---EEEEEEC---------------SSCCEEEEEEETTTTEEEEEEC
T ss_pred             CcccEEEEecCCceEEEECCCCeEEEEeCCCCc---eEEEEeC---------------CCCCcceEEEecccCeEEEEeC
Confidence            799999998 78999999999999999998632   3333321               277899999997 688999998


Q ss_pred             C-CCEEEEEc-CCCc-EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceEee-c
Q 014345          100 M-NMAIRKIS-DSGV-TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQ-Y  175 (426)
Q Consensus       100 ~-N~rIrk~d-~g~V-stIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~~~~-~  175 (426)
                      + +++|.+++ +|.. .++..                ..|..|++|++...++.||++|+.+++|.++++++...... .
T Consensus       222 ~~~~~I~~~~~dG~~~~~~~~----------------~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~  285 (400)
T 3p5b_L          222 GTPAKIKKGGLNGVDIYSLVT----------------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILE  285 (400)
T ss_dssp             SSSCCEEEEETTSCSCEEEEC----------------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEE
T ss_pred             CCCCEEEEEeCCCCccEEEEE----------------CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEe
Confidence            7 58999999 6664 44432                13678999995447889999999999999999987654332 1


Q ss_pred             ---CCCCcceEEEEec
Q 014345          176 ---GSSFPLGIAVLLA  188 (426)
Q Consensus       176 ---~~g~P~GIAv~~g  188 (426)
                         ....|.||++..+
T Consensus       286 ~~~~l~~P~gl~v~~~  301 (400)
T 3p5b_L          286 DEKRLAHPFSLAVFED  301 (400)
T ss_dssp             CSSTTSSEEEEEEETT
T ss_pred             CCCCCCCCEEEEEeCC
Confidence               3467889988633

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=99.47  E-value=2.6e-12  Score=127.63  Aligned_cols=145  Identities=14%  Similarity=0.135  Sum_probs=109.5

Q ss_pred             CcEEEEEecCCCCCCCceEEEEcC-CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcce
Q 014345            7 GYTVETVFDGSKLGIEPYSVEVLP-GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKG   85 (426)
Q Consensus         7 G~tv~tv~~g~~l~~~P~GIaVd~-dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~G   85 (426)
                      |...+.+..+.   ..|.+|++|+ ++.||++|..+++|++++.+++   ....++..               .+..|.|
T Consensus        62 g~~~~~~~~~~---~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~---~~~~~~~~---------------~~~~p~g  120 (349)
T 3v64_C           62 RSEYTLLLNNL---ENAIALDFHHRRELVFWSDVTLDRILRANLNGS---NVEEVVST---------------GLESPGG  120 (349)
T ss_dssp             SCCEEEEECSC---SCEEEEEEETTTTEEEEEETTTTEEEEEETTSC---SCEEEECS---------------SCSCCCE
T ss_pred             CCeeEEeecCC---CceEEEEEeccccEEEEEeccCCceEEEecCCC---CceEEEeC---------------CCCCccE
Confidence            33444444432   2799999996 7889999999999999999863   23444322               1667999


Q ss_pred             EEEcC-CCCEEEEECCCCEEEEEc-CCCc-EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCC-CeE
Q 014345           86 LTVDD-RGNIYIADTMNMAIRKIS-DSGV-TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGN-RAI  161 (426)
Q Consensus        86 IaVd~-dG~LYVADt~N~rIrk~d-~g~V-stIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN-~rI  161 (426)
                      |++|. .|+||++|..+++|.+++ +|.. .++..                ..+..|.+|++....+.||++|+++ ++|
T Consensus       121 lavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~----------------~~l~~P~~iavdp~~g~ly~td~~~~~~I  184 (349)
T 3v64_C          121 LAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLW----------------QSLEKPRAIALHPMEGTIYWTDWGNTPRI  184 (349)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC----------------TTCSCEEEEEEETTTTEEEEEECSSSCEE
T ss_pred             EEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEe----------------CCCCCcceEEEecCcCeEEEeccCCCCEE
Confidence            99996 689999999999999999 6664 33331                1356899999543588999999998 999


Q ss_pred             EEEEcCCCceEee--cCCCCcceEEEEec
Q 014345          162 REIQLHFDDCAYQ--YGSSFPLGIAVLLA  188 (426)
Q Consensus       162 r~I~l~~~~~~~~--~~~g~P~GIAv~~g  188 (426)
                      .++++++......  .....|.|||++..
T Consensus       185 ~r~~~dG~~~~~~~~~~~~~PnGla~d~~  213 (349)
T 3v64_C          185 EASSMDGSGRRIIADTHLFWPNGLTIDYA  213 (349)
T ss_dssp             EEEETTSCSCEESCCSSCSCEEEEEEETT
T ss_pred             EEEeCCCCCcEEEEECCCCCcceEEEeCC
Confidence            9999988655443  34567999999944

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=99.47  E-value=1.1e-12  Score=129.25  Aligned_cols=132  Identities=16%  Similarity=0.126  Sum_probs=103.4

Q ss_pred             CceEEEEcC-CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcC-CCCEEEEEC
Q 014345           22 EPYSVEVLP-GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD-RGNIYIADT   99 (426)
Q Consensus        22 ~P~GIaVd~-dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~-dG~LYVADt   99 (426)
                      .|.|||+|. +|+||++|..+++|.+++.+|..   ..+++.               ..+..|+||++|+ .|.||++|.
T Consensus        80 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~---~~~l~~---------------~~~~~P~giavdp~~g~ly~td~  141 (318)
T 3sov_A           80 SPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL---RKVLFW---------------QELDQPRAIALDPSSGFMYWTDW  141 (318)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSCS---CEEEEC---------------SSCSSEEEEEEEGGGTEEEEEEC
T ss_pred             CccEEEEEcCCCeEEEEECCCCEEEEEECCCCc---EEEEEe---------------CCCCCccEEEEeCCCCEEEEEec
Confidence            799999996 78899999999999999998632   233331               1277899999997 588999997


Q ss_pred             C-CCEEEEEc-CCCc-EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceEee--
Q 014345          100 M-NMAIRKIS-DSGV-TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQ--  174 (426)
Q Consensus       100 ~-N~rIrk~d-~g~V-stIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~~~~--  174 (426)
                      + +++|.+++ +|.. .++..                ..+..|++|++...++.||++|+.+++|.++++++......  
T Consensus       142 ~~~~~I~r~~~dG~~~~~~~~----------------~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~  205 (318)
T 3sov_A          142 GEVPKIERAGMDGSSRFIIIN----------------SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVK  205 (318)
T ss_dssp             SSSCEEEEEETTSCSCEEEEC----------------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC
T ss_pred             CCCCEEEEEEcCCCCeEEEEE----------------CCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEec
Confidence            6 79999999 6664 34432                13678999995445889999999999999999987554332  


Q ss_pred             cCCCCcceEEEEe
Q 014345          175 YGSSFPLGIAVLL  187 (426)
Q Consensus       175 ~~~g~P~GIAv~~  187 (426)
                      .....|.||+++.
T Consensus       206 ~~~~~P~glav~~  218 (318)
T 3sov_A          206 GSLPHPFALTLFE  218 (318)
T ss_dssp             SCCSCEEEEEEET
T ss_pred             CCCCCceEEEEeC
Confidence            2467899999973

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.46  E-value=2.9e-12  Score=120.25  Aligned_cols=132  Identities=17%  Similarity=0.224  Sum_probs=99.9

Q ss_pred             CCceEEEEcC-CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcC-CCCEEEEE
Q 014345           21 IEPYSVEVLP-GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD-RGNIYIAD   98 (426)
Q Consensus        21 ~~P~GIaVd~-dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~-dG~LYVAD   98 (426)
                      ..|++|++++ .|.|||+|..+++|.+++.++..   ...+...               .+..|++|++|+ .|.|||+|
T Consensus        79 ~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~---~~~~~~~---------------~~~~P~~i~vd~~~g~lyv~~  140 (267)
T 1npe_A           79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ---RRVLFDT---------------GLVNPRGIVTDPVRGNLYWTD  140 (267)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS---CEEEECS---------------SCSSEEEEEEETTTTEEEEEE
T ss_pred             CCccEEEEEecCCeEEEEECCCCEEEEEEcCCCC---EEEEEEC---------------CCCCccEEEEeeCCCEEEEEE
Confidence            3799999998 47899999999999999998632   2333211               156799999998 58899999


Q ss_pred             CC--CCEEEEEc-CCCc-EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceE-e
Q 014345           99 TM--NMAIRKIS-DSGV-TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCA-Y  173 (426)
Q Consensus        99 t~--N~rIrk~d-~g~V-stIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~~-~  173 (426)
                      ..  +++|.+++ ++.. .++..                ..+..|.+|++....+.|||+|+++++|.++++++.... .
T Consensus       141 ~~~~~~~I~~~~~dg~~~~~~~~----------------~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~  204 (267)
T 1npe_A          141 WNRDNPKIETSHMDGTNRRILAQ----------------DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKV  204 (267)
T ss_dssp             CCSSSCEEEEEETTSCCCEEEEC----------------TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEE
T ss_pred             CCCCCcEEEEEecCCCCcEEEEE----------------CCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEE
Confidence            87  68999998 6653 33321                125679999953346799999999999999999864332 2


Q ss_pred             ecCCCCcceEEEE
Q 014345          174 QYGSSFPLGIAVL  186 (426)
Q Consensus       174 ~~~~g~P~GIAv~  186 (426)
                      ......|.||+++
T Consensus       205 ~~~~~~P~gi~~d  217 (267)
T 1npe_A          205 LEGLQYPFAVTSY  217 (267)
T ss_dssp             EECCCSEEEEEEE
T ss_pred             ecCCCCceEEEEe
Confidence            3455679999987

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=99.45  E-value=2.8e-12  Score=126.49  Aligned_cols=130  Identities=19%  Similarity=0.212  Sum_probs=98.8

Q ss_pred             CCceEEEEcC-CCcEEEEECC-CCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcC-CCCEEEE
Q 014345           21 IEPYSVEVLP-GGELLILDSA-NSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD-RGNIYIA   97 (426)
Q Consensus        21 ~~P~GIaVd~-dG~LYVaD~~-n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~-dG~LYVA   97 (426)
                      ..|.||++|+ .|.||++|.. +++|.+++.+|..   ...++..               .|..|+|||+|+ +++||++
T Consensus       122 ~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~---~~~~~~~---------------~l~~Pnglavd~~~~~lY~a  183 (318)
T 3sov_A          122 DQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS---RFIIINS---------------EIYWPNGLTLDYEEQKLYWA  183 (318)
T ss_dssp             SSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS---CEEEECS---------------SCSCEEEEEEETTTTEEEEE
T ss_pred             CCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC---eEEEEEC---------------CCCCccEEEEeccCCEEEEE
Confidence            4799999998 6889999975 7999999999632   3333321               277899999997 6789999


Q ss_pred             ECCCCEEEEEc-CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcC-CCc-eEe
Q 014345           98 DTMNMAIRKIS-DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLH-FDD-CAY  173 (426)
Q Consensus        98 Dt~N~rIrk~d-~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~-~~~-~~~  173 (426)
                      |+.+++|++++ +|. ..+++.+                .+..|.+|+ ++ .+.||++|+++++|.++++. +.. ...
T Consensus       184 D~~~~~I~~~d~dG~~~~~~~~~----------------~~~~P~gla-v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i  245 (318)
T 3sov_A          184 DAKLNFIHKSNLDGTNRQAVVKG----------------SLPHPFALT-LF-EDILYWTDWSTHSILACNKYTGEGLREI  245 (318)
T ss_dssp             ETTTTEEEEEETTSCSCEEEECS----------------CCSCEEEEE-EE-TTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             ECCCCEEEEEcCCCCceEEEecC----------------CCCCceEEE-Ee-CCEEEEEecCCCeEEEEECCCCCceEEE
Confidence            99999999999 665 4444421                356899999 45 57999999999999999984 332 233


Q ss_pred             ecCCCCcceEEEE
Q 014345          174 QYGSSFPLGIAVL  186 (426)
Q Consensus       174 ~~~~g~P~GIAv~  186 (426)
                      ......|.+|++.
T Consensus       246 ~~~~~~P~~i~v~  258 (318)
T 3sov_A          246 HSDIFSPMDIHAF  258 (318)
T ss_dssp             ECCCSSCCCEEEE
T ss_pred             eCCCCCCcEEEEe
Confidence            3444567777765

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=99.45  E-value=3.5e-12  Score=128.41  Aligned_cols=133  Identities=15%  Similarity=0.157  Sum_probs=104.5

Q ss_pred             CceEEEEcC-CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcC-CCCEEEEEC
Q 014345           22 EPYSVEVLP-GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD-RGNIYIADT   99 (426)
Q Consensus        22 ~P~GIaVd~-dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~-dG~LYVADt   99 (426)
                      .|.||++++ ++.||++|..+++|++++.+++   ....++..               .+..|.||++|. .|+||++|.
T Consensus       117 ~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~---~~~~~~~~---------------~~~~p~glavd~~~g~lY~~d~  178 (386)
T 3v65_B          117 NAIALDFHHRRELVFWSDVTLDRILRANLNGS---NVEEVVST---------------GLESPGGLAVDWVHDKLYWTDS  178 (386)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSC---CEEEEECS---------------SCSCCCCEEEETTTTEEEEEET
T ss_pred             ccEEEEEecCCCeEEEEeCCCCcEEEEecCCC---CcEEEEeC---------------CCCCccEEEEEeCCCeEEEEcC
Confidence            799999996 6789999999999999999863   23444322               166799999996 688999999


Q ss_pred             CCCEEEEEc-CCCc-EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCC-CeEEEEEcCCCceEee--
Q 014345          100 MNMAIRKIS-DSGV-TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGN-RAIREIQLHFDDCAYQ--  174 (426)
Q Consensus       100 ~N~rIrk~d-~g~V-stIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN-~rIr~I~l~~~~~~~~--  174 (426)
                      .+++|.+++ +|.. .++..                ..|..|.+|++....+.||++|+++ ++|.++++++......  
T Consensus       179 ~~~~I~~~~~dg~~~~~l~~----------------~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~  242 (386)
T 3v65_B          179 GTSRIEVANLDGAHRKVLLW----------------QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIAD  242 (386)
T ss_dssp             TTTEEEECBTTSCSCEEEEC----------------SSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC
T ss_pred             CCCeEEEEeCCCCceEEeec----------------CCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEE
Confidence            999999999 6654 34432                1366899999544688999999998 9999999988655433  


Q ss_pred             cCCCCcceEEEEec
Q 014345          175 YGSSFPLGIAVLLA  188 (426)
Q Consensus       175 ~~~g~P~GIAv~~g  188 (426)
                      .....|.|||++..
T Consensus       243 ~~~~~PnGlavd~~  256 (386)
T 3v65_B          243 THLFWPNGLTIDYA  256 (386)
T ss_dssp             SSCSCEEEEEEEGG
T ss_pred             CCCCCeeeEEEeCC
Confidence            44567999999843

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.45  E-value=3.8e-12  Score=117.33  Aligned_cols=133  Identities=22%  Similarity=0.316  Sum_probs=100.9

Q ss_pred             CCceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECC
Q 014345           21 IEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTM  100 (426)
Q Consensus        21 ~~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~  100 (426)
                      ..|.+|+++++|+|||++. +++|++++.++..   ...+..               ..+..|.+|+++++|+|||+|..
T Consensus        67 ~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~---~~~~~~---------------~~~~~p~~i~~~~~g~l~v~~~~  127 (270)
T 1rwi_B           67 YQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNN---QTVLPF---------------DGLNYPEGLAVDTQGAVYVADRG  127 (270)
T ss_dssp             CSCCCEEECTTCCEEEEET-TTEEEEECTTCSC---CEECCC---------------CSCSSEEEEEECTTCCEEEEEGG
T ss_pred             CCcceeEECCCCCEEEEcC-CCEEEEEeCCCce---Eeeeec---------------CCcCCCcceEECCCCCEEEEECC
Confidence            4799999999999999998 8899999988532   222211               11567999999999999999999


Q ss_pred             CCEEEEEcCCCc-EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceEee--cCC
Q 014345          101 NMAIRKISDSGV-TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQ--YGS  177 (426)
Q Consensus       101 N~rIrk~d~g~V-stIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~~~~--~~~  177 (426)
                      +++|.+++.+.. .....               ...+..|.+|+ ++++|+|||++..+++|.+++..+......  ...
T Consensus       128 ~~~i~~~~~~~~~~~~~~---------------~~~~~~p~~i~-~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~  191 (270)
T 1rwi_B          128 NNRVVKLAAGSKTQTVLP---------------FTGLNDPDGVA-VDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDI  191 (270)
T ss_dssp             GTEEEEECTTCCSCEECC---------------CCSCCSCCCEE-ECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSC
T ss_pred             CCEEEEEECCCceeEeec---------------cccCCCceeEE-EeCCCCEEEEECCCCEEEEEecCCCceEeecccCC
Confidence            999999985542 22211               11255799998 688999999999999999999887655432  233


Q ss_pred             CCcceEEEEec
Q 014345          178 SFPLGIAVLLA  188 (426)
Q Consensus       178 g~P~GIAv~~g  188 (426)
                      ..|.+|+++..
T Consensus       192 ~~p~~i~~d~~  202 (270)
T 1rwi_B          192 TAPWGIAVDEA  202 (270)
T ss_dssp             CSEEEEEECTT
T ss_pred             CCceEEEECCC
Confidence            56889988743

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=99.44  E-value=3.4e-12  Score=124.62  Aligned_cols=132  Identities=18%  Similarity=0.198  Sum_probs=97.7

Q ss_pred             CCceEEEEcC-CCcEEEEECCC-CeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcC-CCCEEEE
Q 014345           21 IEPYSVEVLP-GGELLILDSAN-SNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD-RGNIYIA   97 (426)
Q Consensus        21 ~~P~GIaVd~-dG~LYVaD~~n-~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~-dG~LYVA   97 (426)
                      ..|.+|++|+ +|.||++|..+ ++|.+++.+|..   ...++..               .|..|+||++|+ ++.||++
T Consensus       120 ~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~---~~~~~~~---------------~~~~P~gla~d~~~~~lY~~  181 (316)
T 1ijq_A          120 SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD---IYSLVTE---------------NIQWPNGITLDLLSGRLYWV  181 (316)
T ss_dssp             CCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC---EEEEECS---------------SCSCEEEEEEETTTTEEEEE
T ss_pred             CCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC---eEEEEEC---------------CCCCceEEEEeccCCEEEEE
Confidence            3899999997 78899999876 899999998632   2223211               277899999996 5789999


Q ss_pred             ECCCCEEEEEc-CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcC-CCceE-e
Q 014345           98 DTMNMAIRKIS-DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLH-FDDCA-Y  173 (426)
Q Consensus        98 Dt~N~rIrk~d-~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~-~~~~~-~  173 (426)
                      |+.+++|.+++ +|. ..+++..              ...+..|.+|++ + ++.||++|+++++|.+++.. +.... .
T Consensus       182 D~~~~~I~~~d~dg~~~~~~~~~--------------~~~~~~P~giav-~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i  245 (316)
T 1ijq_A          182 DSKLHSISSIDVNGGNRKTILED--------------EKRLAHPFSLAV-F-EDKVFWTDIINEAIFSANRLTGSDVNLL  245 (316)
T ss_dssp             ETTTTEEEEEETTSCSCEEEEEC--------------TTTTSSEEEEEE-E-TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred             ECCCCeEEEEecCCCceEEEeec--------------CCccCCcEEEEE-E-CCEEEEEECCCCeEEEEeCCCCcceEEE
Confidence            99999999999 665 4454421              113568999994 5 58999999999999999974 33332 2


Q ss_pred             ecCCCCcceEEEE
Q 014345          174 QYGSSFPLGIAVL  186 (426)
Q Consensus       174 ~~~~g~P~GIAv~  186 (426)
                      ..+...|.||++.
T Consensus       246 ~~~~~~p~~i~v~  258 (316)
T 1ijq_A          246 AENLLSPEDMVLF  258 (316)
T ss_dssp             ECSCSCCCCEEEE
T ss_pred             ecCCCCceEEEEe
Confidence            2333456677665

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=99.42  E-value=3.1e-12  Score=141.23  Aligned_cols=132  Identities=16%  Similarity=0.098  Sum_probs=101.4

Q ss_pred             CCceEEEEcCC-CcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCC-CCEEEEE
Q 014345           21 IEPYSVEVLPG-GELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDR-GNIYIAD   98 (426)
Q Consensus        21 ~~P~GIaVd~d-G~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~d-G~LYVAD   98 (426)
                      ..|.|||||.. ++||++|..+++|.+++.+|..   ..+++..               .|..|.|||||+. |.||++|
T Consensus       471 ~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~---~~~l~~~---------------~l~~P~gIaVDp~~g~LYwtD  532 (791)
T 3m0c_C          471 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK---RKTLFRE---------------NGSKPRAIVVDPVHGFMYWTD  532 (791)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSS---EEEEEEC---------------TTCCEEEEEEETTTTEEEEEE
T ss_pred             CCcceeeeeecCCcEEEEecCCCeEEEEeCCCCe---EEEEEeC---------------CCCCcceEEEecCCCCEEEec
Confidence            37999999975 5899999999999999999632   3344322               2778999999985 8999999


Q ss_pred             CCC-CEEEEEc-CCCc-EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceEeec
Q 014345           99 TMN-MAIRKIS-DSGV-TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQY  175 (426)
Q Consensus        99 t~N-~rIrk~d-~g~V-stIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~~~~~  175 (426)
                      .++ ++|.+++ +|.. .++..                ..|.+|.+|++....+.|||+|+++++|.++++++.......
T Consensus       533 ~g~~~~I~~~~~dG~~~~~lv~----------------~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~  596 (791)
T 3m0c_C          533 WGTPAKIKKGGLNGVDIYSLVT----------------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTIL  596 (791)
T ss_dssp             CSSSCEEEEEETTSCCEEEEEC----------------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred             CCCCCeEEEEecCCCceEEEEe----------------CCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEe
Confidence            986 8999999 6664 34432                136789999954478999999999999999999886654332


Q ss_pred             ----CCCCcceEEEE
Q 014345          176 ----GSSFPLGIAVL  186 (426)
Q Consensus       176 ----~~g~P~GIAv~  186 (426)
                          ....|.||++.
T Consensus       597 ~~~~~l~~P~glav~  611 (791)
T 3m0c_C          597 EDEKRLAHPFSLAVF  611 (791)
T ss_dssp             ECTTTTSSEEEEEEE
T ss_pred             cCCCccCCCCEEEEe
Confidence                23456677764

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=99.42  E-value=4.3e-12  Score=136.23  Aligned_cols=133  Identities=12%  Similarity=0.122  Sum_probs=105.2

Q ss_pred             CceEEEEcC-CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCC-CCEEEEEC
Q 014345           22 EPYSVEVLP-GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDR-GNIYIADT   99 (426)
Q Consensus        22 ~P~GIaVd~-dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~d-G~LYVADt   99 (426)
                      .|.|||+|. .++||++|..+++|.+++.+|..   ..+++..               .|+.|++|++|+. |.||++|.
T Consensus       393 ~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~---~~~l~~~---------------~l~~P~~iavdp~~G~ly~tD~  454 (619)
T 3s94_A          393 HPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTM---RKILISE---------------DLEEPRAIVLDPMVGYMYWTDW  454 (619)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSCS---CEEEECT---------------TCCSEEEEEEETTTTEEEEEEC
T ss_pred             CcCceEEecccCcEEEEeCCCCcEEEEeCCCCe---EEEEEEC---------------CCCCeeeEEEEcCCCcEEEecC
Confidence            899999996 78899999999999999999642   3444321               2889999999984 99999998


Q ss_pred             CC-CEEEEEc-CCCc-EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceEe--e
Q 014345          100 MN-MAIRKIS-DSGV-TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAY--Q  174 (426)
Q Consensus       100 ~N-~rIrk~d-~g~V-stIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~~~--~  174 (426)
                      ++ .+|.+++ +|.. .++..                ..|.+|++|++...++.||++|+++++|.++++++.....  .
T Consensus       455 g~~~~I~r~~~dG~~~~~l~~----------------~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~  518 (619)
T 3s94_A          455 GEIPKIERAALDGSDRVVLVN----------------TSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVE  518 (619)
T ss_dssp             SSSCEEEEEETTSCSCEEEEC----------------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEE
T ss_pred             CCCCEEEEEccCCCccEEEEe----------------CCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCceEEEec
Confidence            75 8999998 7663 33432                1377899999544688999999999999999998865543  3


Q ss_pred             cCCCCcceEEEEec
Q 014345          175 YGSSFPLGIAVLLA  188 (426)
Q Consensus       175 ~~~g~P~GIAv~~g  188 (426)
                      .....|.|||+..+
T Consensus       519 ~~l~~P~glav~~~  532 (619)
T 3s94_A          519 DKIPHIFGFTLLGD  532 (619)
T ss_dssp             CCCCSSCCEEEETT
T ss_pred             cCCCCcEEEEEECC
Confidence            45567999998744

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.42  E-value=9.3e-12  Score=116.76  Aligned_cols=132  Identities=14%  Similarity=0.122  Sum_probs=101.0

Q ss_pred             CceEEEEcC-CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCC-CCEEEEEC
Q 014345           22 EPYSVEVLP-GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDR-GNIYIADT   99 (426)
Q Consensus        22 ~P~GIaVd~-dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~d-G~LYVADt   99 (426)
                      .|+|+++|+ ++.||++|..+++|.+++.++..   ...++..               .+..|.+|++|++ ++|||+|.
T Consensus        37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~---~~~~~~~---------------~~~~p~~ia~d~~~~~lyv~d~   98 (267)
T 1npe_A           37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE---PTTIIRQ---------------DLGSPEGIALDHLGRTIFWTDS   98 (267)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSSCC---CEEEECT---------------TCCCEEEEEEETTTTEEEEEET
T ss_pred             cEEEEEEecCCCEEEEEECCCCEEEEEecCCCC---cEEEEEC---------------CCCCccEEEEEecCCeEEEEEC
Confidence            689999998 57899999999999999998632   3333311               2668999999984 78999999


Q ss_pred             CCCEEEEEc-CCCc-EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECC-CCeEEEEECC--CCeEEEEEcCCCceEee
Q 014345          100 MNMAIRKIS-DSGV-TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGS-SCSLLVIDRG--NRAIREIQLHFDDCAYQ  174 (426)
Q Consensus       100 ~N~rIrk~d-~g~V-stIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~-~G~LYVaDsg--N~rIr~I~l~~~~~~~~  174 (426)
                      .+++|.+++ ++.. .++...                .+..|.+|+ +++ .+.|||+|.+  +++|.++++++......
T Consensus        99 ~~~~I~~~~~~g~~~~~~~~~----------------~~~~P~~i~-vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~  161 (267)
T 1npe_A           99 QLDRIEVAKMDGTQRRVLFDT----------------GLVNPRGIV-TDPVRGNLYWTDWNRDNPKIETSHMDGTNRRIL  161 (267)
T ss_dssp             TTTEEEEEETTSCSCEEEECS----------------SCSSEEEEE-EETTTTEEEEEECCSSSCEEEEEETTSCCCEEE
T ss_pred             CCCEEEEEEcCCCCEEEEEEC----------------CCCCccEEE-EeeCCCEEEEEECCCCCcEEEEEecCCCCcEEE
Confidence            999999999 6553 333321                245799999 455 7999999987  78999999887544322


Q ss_pred             --cCCCCcceEEEEec
Q 014345          175 --YGSSFPLGIAVLLA  188 (426)
Q Consensus       175 --~~~g~P~GIAv~~g  188 (426)
                        .....|.|||++..
T Consensus       162 ~~~~~~~P~gia~d~~  177 (267)
T 1npe_A          162 AQDNLGLPNGLTFDAF  177 (267)
T ss_dssp             ECTTCSCEEEEEEETT
T ss_pred             EECCCCCCcEEEEcCC
Confidence              34567999999853

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.41  E-value=1.9e-11  Score=114.34  Aligned_cols=135  Identities=16%  Similarity=0.299  Sum_probs=102.0

Q ss_pred             CCceEEEE-cCCCcEEEEECC-CCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEE
Q 014345           21 IEPYSVEV-LPGGELLILDSA-NSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIAD   98 (426)
Q Consensus        21 ~~P~GIaV-d~dG~LYVaD~~-n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVAD   98 (426)
                      ..|.+|++ +++|+|||++.. +++|++++.++.    .....+.              ..+..|.+|+++++|+|||+|
T Consensus        77 ~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~g~----~~~~~~~--------------~~~~~~~~i~~~~~g~l~v~~  138 (286)
T 1q7f_A           77 LYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQ----FVRKFGA--------------TILQHPRGVTVDNKGRIIVVE  138 (286)
T ss_dssp             SSEEEEEEETTTTEEEEEECGGGCEEEEECTTSC----EEEEECT--------------TTCSCEEEEEECTTSCEEEEE
T ss_pred             cCceEEEEEcCCCeEEEEcCCCCCEEEEECCCCc----EEEEecC--------------ccCCCceEEEEeCCCCEEEEE
Confidence            47999999 579999999975 889999997742    2222221              125679999999999999999


Q ss_pred             CCCCEEEEEc-CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceEeecC-
Q 014345           99 TMNMAIRKIS-DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQYG-  176 (426)
Q Consensus        99 t~N~rIrk~d-~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~~~~~~-  176 (426)
                      ..+++|.+++ ++......+.              ...+..|.+|+ ++++|+|||+|..+++|++++..+........ 
T Consensus       139 ~~~~~i~~~~~~g~~~~~~~~--------------~~~~~~p~~i~-~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~  203 (286)
T 1q7f_A          139 CKVMRVIIFDQNGNVLHKFGC--------------SKHLEFPNGVV-VNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGE  203 (286)
T ss_dssp             TTTTEEEEECTTSCEEEEEEC--------------TTTCSSEEEEE-ECSSSEEEEEEGGGTEEEEEETTCCEEEEESCT
T ss_pred             CCCCEEEEEcCCCCEEEEeCC--------------CCccCCcEEEE-ECCCCCEEEEECCCCEEEEEcCCCCEEEEEccC
Confidence            9999999999 5554333321              01355799998 78899999999999999999987654433322 


Q ss_pred             --CCCcceEEEEec
Q 014345          177 --SSFPLGIAVLLA  188 (426)
Q Consensus       177 --~g~P~GIAv~~g  188 (426)
                        ...|.+|+++..
T Consensus       204 g~~~~p~~i~~d~~  217 (286)
T 1q7f_A          204 GITNYPIGVGINSN  217 (286)
T ss_dssp             TTSCSEEEEEECTT
T ss_pred             CccCCCcEEEECCC
Confidence              256899998843

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=99.41  E-value=8.8e-12  Score=126.34  Aligned_cols=138  Identities=17%  Similarity=0.108  Sum_probs=103.6

Q ss_pred             CCceEEEEcC-CCcEEEEECCCCeEEEEeCCCCcc-cccEEEecCCCCcccccCCcccccccCCcceEEEcC-CCCEEEE
Q 014345           21 IEPYSVEVLP-GGELLILDSANSNLYRISSSLSLY-SRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD-RGNIYIA   97 (426)
Q Consensus        21 ~~P~GIaVd~-dG~LYVaD~~n~rI~kid~dg~~~-g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~-dG~LYVA   97 (426)
                      ..|.+|++++ ++.||++|..+++|++++.++... +....++..               .+..|.|||+|. .++||++
T Consensus       112 ~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~---------------~~~~p~glavD~~~~~lY~~  176 (400)
T 3p5b_L          112 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR---------------DIQAPDGLAVDWIHSNIYWT  176 (400)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECS---------------SCSCEEEEEEETTTTEEEEE
T ss_pred             CcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeC---------------CCCCcccEEEEecCCceEEE
Confidence            3799999997 678999999999999999985210 123334332               267899999997 7899999


Q ss_pred             ECCCCEEEEEc-CCCc-EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECC-CCeEEEEEcCCCceEee
Q 014345           98 DTMNMAIRKIS-DSGV-TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRG-NRAIREIQLHFDDCAYQ  174 (426)
Q Consensus        98 Dt~N~rIrk~d-~g~V-stIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsg-N~rIr~I~l~~~~~~~~  174 (426)
                      |..+++|.+++ +|.. .++..                ..+..|.+|++....|.||++|++ +++|.++++++......
T Consensus       177 d~~~~~I~~~~~~g~~~~~l~~----------------~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~  240 (400)
T 3p5b_L          177 DSVLGTVSVADTKGVKRKTLFR----------------ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL  240 (400)
T ss_dssp             ETTTTEEEEECTTTCSEEEEEE----------------CSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEE
T ss_pred             ECCCCeEEEEeCCCCceEEEEe----------------CCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEE
Confidence            99999999999 6664 34432                135679999954458899999987 58999999998655432


Q ss_pred             --cCCCCcceEEEEecC
Q 014345          175 --YGSSFPLGIAVLLAA  189 (426)
Q Consensus       175 --~~~g~P~GIAv~~g~  189 (426)
                        .....|.|||++...
T Consensus       241 ~~~~l~~P~glavd~~~  257 (400)
T 3p5b_L          241 VTENIQWPNGITLDLLS  257 (400)
T ss_dssp             ECSSCSCEEEEEEETTT
T ss_pred             EECCCCceEEEEEEeCC
Confidence              445689999999543

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.40  E-value=1e-11  Score=114.39  Aligned_cols=133  Identities=19%  Similarity=0.321  Sum_probs=99.3

Q ss_pred             CCceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECC
Q 014345           21 IEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTM  100 (426)
Q Consensus        21 ~~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~  100 (426)
                      ..|.+|+++++|+|||+|..+++|++++....   ... ...              ...+..|.+|+++++|+|||+|..
T Consensus       108 ~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~---~~~-~~~--------------~~~~~~p~~i~~~~~g~l~v~~~~  169 (270)
T 1rwi_B          108 NYPEGLAVDTQGAVYVADRGNNRVVKLAAGSK---TQT-VLP--------------FTGLNDPDGVAVDNSGNVYVTDTD  169 (270)
T ss_dssp             SSEEEEEECTTCCEEEEEGGGTEEEEECTTCC---SCE-ECC--------------CCSCCSCCCEEECTTCCEEEEEGG
T ss_pred             CCCcceEECCCCCEEEEECCCCEEEEEECCCc---eeE-eec--------------cccCCCceeEEEeCCCCEEEEECC
Confidence            37999999999999999999999999965421   111 110              012667999999999999999999


Q ss_pred             CCEEEEEc-CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceEeec--CC
Q 014345          101 NMAIRKIS-DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQY--GS  177 (426)
Q Consensus       101 N~rIrk~d-~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~~~~~--~~  177 (426)
                      +++|.+++ ++.......               ...+..|.+|+ ++++|+|||++..+++|.++++.+.......  +.
T Consensus       170 ~~~i~~~~~~~~~~~~~~---------------~~~~~~p~~i~-~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~  233 (270)
T 1rwi_B          170 NNRVVKLEAESNNQVVLP---------------FTDITAPWGIA-VDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGL  233 (270)
T ss_dssp             GTEEEEECTTTCCEEECC---------------CSSCCSEEEEE-ECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSC
T ss_pred             CCEEEEEecCCCceEeec---------------ccCCCCceEEE-ECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCC
Confidence            99999999 444322211               01245789998 7889999999999999999998876544332  23


Q ss_pred             CCcceEEEEe
Q 014345          178 SFPLGIAVLL  187 (426)
Q Consensus       178 g~P~GIAv~~  187 (426)
                      ..|.+|+++.
T Consensus       234 ~~p~~i~~~~  243 (270)
T 1rwi_B          234 NTPLAVAVDS  243 (270)
T ss_dssp             SCEEEEEECT
T ss_pred             CCceeEEECC
Confidence            4688888873

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=99.38  E-value=1.2e-11  Score=136.49  Aligned_cols=137  Identities=18%  Similarity=0.110  Sum_probs=103.0

Q ss_pred             CceEEEEcC-CCcEEEEECCCCeEEEEeCCCCcc-cccEEEecCCCCcccccCCcccccccCCcceEEEcCC-CCEEEEE
Q 014345           22 EPYSVEVLP-GGELLILDSANSNLYRISSSLSLY-SRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDR-GNIYIAD   98 (426)
Q Consensus        22 ~P~GIaVd~-dG~LYVaD~~n~rI~kid~dg~~~-g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~d-G~LYVAD   98 (426)
                      .|.+|+++. ++.||++|..+++|++++.++... +....++..               .|..|.|||||.. ++||++|
T Consensus       425 ~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~---------------~l~~P~GLAvD~~~~~LY~tD  489 (791)
T 3m0c_C          425 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR---------------DIQAPDGLAVDWIHSNIYWTD  489 (791)
T ss_dssp             SEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECS---------------SCSCCCEEEEETTTTEEEEEE
T ss_pred             ceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEec---------------CCCCcceeeeeecCCcEEEEe
Confidence            799999998 678999999999999999985321 123444432               2778999999975 5899999


Q ss_pred             CCCCEEEEEc-CCCc-EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCC-CeEEEEEcCCCceEee-
Q 014345           99 TMNMAIRKIS-DSGV-TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGN-RAIREIQLHFDDCAYQ-  174 (426)
Q Consensus        99 t~N~rIrk~d-~g~V-stIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN-~rIr~I~l~~~~~~~~-  174 (426)
                      ..+++|++++ +|.. .+++.                ..|..|.+|++....|.||++|+++ ++|.++++++...... 
T Consensus       490 ~~~~~I~v~~ldG~~~~~l~~----------------~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv  553 (791)
T 3m0c_C          490 SVLGTVSVADTKGVKRKTLFR----------------ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV  553 (791)
T ss_dssp             TTTTEEEEEETTSSSEEEEEE----------------CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEE
T ss_pred             cCCCeEEEEeCCCCeEEEEEe----------------CCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEE
Confidence            9999999999 6664 44432                1356799999544468999999987 9999999998765443 


Q ss_pred             -cCCCCcceEEEEecC
Q 014345          175 -YGSSFPLGIAVLLAA  189 (426)
Q Consensus       175 -~~~g~P~GIAv~~g~  189 (426)
                       .....|.|||++...
T Consensus       554 ~~~l~~P~GLavD~~~  569 (791)
T 3m0c_C          554 TENIQWPNGITLDLLS  569 (791)
T ss_dssp             CSSCSCEEEEEEETTT
T ss_pred             eCCCCCceEEEEecCC
Confidence             344679999999443

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=99.37  E-value=1.7e-11  Score=131.87  Aligned_cols=131  Identities=15%  Similarity=0.134  Sum_probs=103.7

Q ss_pred             CceEEEEcC-CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcC-CCCEEEEEC
Q 014345           22 EPYSVEVLP-GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD-RGNIYIADT   99 (426)
Q Consensus        22 ~P~GIaVd~-dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~-dG~LYVADt   99 (426)
                      .|.|||+|. .|+||++|..+++|.+++.+|..   ..+++..               .|..|.+|++|+ +|.||++|.
T Consensus        81 ~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~---~~~l~~~---------------~l~~P~~iavdp~~G~lY~tD~  142 (628)
T 4a0p_A           81 YPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQH---RQVLVWK---------------DLDSPRALALDPAEGFMYWTEW  142 (628)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSTT---CEEEECS---------------SCCCEEEEEEETTTTEEEEEEC
T ss_pred             CcceEEEEeCCCEEEEEECCCCEEEEEecCCCc---EEEEEeC---------------CCCCcccEEEccCCCeEEEeCC
Confidence            799999997 67899999999999999999642   3333321               278899999997 799999998


Q ss_pred             C-CCEEEEEc-CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceEe-ec
Q 014345          100 M-NMAIRKIS-DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAY-QY  175 (426)
Q Consensus       100 ~-N~rIrk~d-~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~~~-~~  175 (426)
                      + +.+|.+++ +|. ..+++.                 .+.+|.+|++....+.||++|..+++|.++++++..... ..
T Consensus       143 g~~~~I~r~~~dG~~~~~l~~-----------------~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~  205 (628)
T 4a0p_A          143 GGKPKIDRAAMDGSERTTLVP-----------------NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIAD  205 (628)
T ss_dssp             SSSCEEEEEETTSCSCEEEEC-----------------SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEE
T ss_pred             CCCCEEEEEeCCCCceEEEEC-----------------CCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceEEeec
Confidence            7 78999999 666 445542                 256899999544578999999999999999998754433 34


Q ss_pred             CCCCcceEEEEe
Q 014345          176 GSSFPLGIAVLL  187 (426)
Q Consensus       176 ~~g~P~GIAv~~  187 (426)
                      ....|.|||++.
T Consensus       206 ~l~~P~glav~~  217 (628)
T 4a0p_A          206 DLPHPFGLTQYQ  217 (628)
T ss_dssp             CCSCEEEEEEET
T ss_pred             cCCCceEEEEEC
Confidence            456799999974

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.35  E-value=1.1e-10  Score=108.21  Aligned_cols=134  Identities=16%  Similarity=0.214  Sum_probs=102.0

Q ss_pred             CCceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECC
Q 014345           21 IEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTM  100 (426)
Q Consensus        21 ~~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~  100 (426)
                      ..|++|+++++|+|||++..+++|++++.++    ....+...              ..+..|.+|++|++|+|||++..
T Consensus       146 ~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g----~~~~~~~~--------------~~~~~~~~i~~d~~g~l~v~~~~  207 (300)
T 2qc5_A          146 SYPAFITLGSDNALWFTENQNNSIGRITNTG----KLEEYPLP--------------TNAAAPVGITSGNDGALWFVEIM  207 (300)
T ss_dssp             CCEEEEEECTTSSEEEEETTTTEEEEECTTC----CEEEEECS--------------STTCCEEEEEECTTSSEEEEETT
T ss_pred             CCceeEEECCCCCEEEEecCCCeEEEECCCC----cEEEeeCC--------------CCCCCcceEEECCCCCEEEEccC
Confidence            4799999999999999999999999999863    33333211              12567999999999999999999


Q ss_pred             CCEEEEEc-CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceEee--cCC
Q 014345          101 NMAIRKIS-DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQ--YGS  177 (426)
Q Consensus       101 N~rIrk~d-~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~~~~--~~~  177 (426)
                      +++|.+++ ++.+..+...               ..+..|.+|+ ++++|+|||++.++++|.++++.+....+.  ...
T Consensus       208 ~~~i~~~~~~g~~~~~~~~---------------~~~~~~~~i~-~d~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~  271 (300)
T 2qc5_A          208 GNKIGRITTTGEISEYDIP---------------TPNARPHAIT-AGKNSEIWFTEWGANQIGRITNDNTIQEYQLQTEN  271 (300)
T ss_dssp             TTEEEEECTTCCEEEEECS---------------STTCCEEEEE-ECSTTCEEEEETTTTEEEEECTTSCEEEEECCSTT
T ss_pred             CCEEEEEcCCCcEEEEECC---------------CCCCCceEEE-ECCCCCEEEeccCCCeEEEECCCCcEEEEECCccC
Confidence            99999999 5555444221               1245789998 788999999999999999999865333332  234


Q ss_pred             CCcceEEEEec
Q 014345          178 SFPLGIAVLLA  188 (426)
Q Consensus       178 g~P~GIAv~~g  188 (426)
                      ..|.+|+++..
T Consensus       272 ~~~~~i~~~~~  282 (300)
T 2qc5_A          272 AEPHGITFGKD  282 (300)
T ss_dssp             CCCCCEEECTT
T ss_pred             CccceeEeCCC
Confidence            56889988743

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=99.34  E-value=1.9e-11  Score=131.57  Aligned_cols=134  Identities=15%  Similarity=0.159  Sum_probs=104.8

Q ss_pred             CCceEEEEcCC-CcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcC-CCCEEEEE
Q 014345           21 IEPYSVEVLPG-GELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD-RGNIYIAD   98 (426)
Q Consensus        21 ~~P~GIaVd~d-G~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~-dG~LYVAD   98 (426)
                      ..|.|||+|.. ++||++|..+++|.+++.+|..   ..+++..               .|+.|++|++|+ +|.||++|
T Consensus       389 ~~p~glAvD~~~~nLY~td~~~~~I~v~~~~G~~---~~~l~~~---------------~l~~Pr~iavdp~~g~ly~tD  450 (628)
T 4a0p_A          389 IQPYDLSIDIYSRYIYWTCEATNVINVTRLDGRS---VGVVLKG---------------EQDRPRAVVVNPEKGYMYFTN  450 (628)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCE---EEEEEEC---------------TTCCEEEEEEETTTTEEEEEE
T ss_pred             CCcceEEeeccCCeEEEEcCCCCEEEEEECCCCe---EEEEEeC---------------CCCceeeEEEecCCCeEEEee
Confidence            37999999985 6799999999999999998632   2233211               277899999999 89999999


Q ss_pred             CCCC--EEEEEc-CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceEee
Q 014345           99 TMNM--AIRKIS-DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQ  174 (426)
Q Consensus        99 t~N~--rIrk~d-~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~~~~  174 (426)
                      .+++  +|.+++ +|. ..++...                .+.+|++|++....++||++|..+++|.++++++......
T Consensus       451 ~g~~~~~I~r~~~dG~~~~~l~~~----------------~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~r~~~  514 (628)
T 4a0p_A          451 LQERSPKIERAALDGTEREVLFFS----------------GLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRIVL  514 (628)
T ss_dssp             EETTEEEEEEEETTSCSCEEEECS----------------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred             cCCCCCeEEEEeCCCCCcEEEEec----------------cCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCceEEE
Confidence            9877  799999 776 4444321                3678999995445689999999999999999988665443


Q ss_pred             --cCCCCcceEEEEec
Q 014345          175 --YGSSFPLGIAVLLA  188 (426)
Q Consensus       175 --~~~g~P~GIAv~~g  188 (426)
                        .....|.|||+..+
T Consensus       515 ~~~~~~~P~glav~~~  530 (628)
T 4a0p_A          515 EDSNILQPVGLTVFEN  530 (628)
T ss_dssp             ECSSCSCEEEEEEETT
T ss_pred             EcCCCCCcEEEEEECC
Confidence              34567999998743

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=99.33  E-value=5.4e-11  Score=127.74  Aligned_cols=134  Identities=19%  Similarity=0.230  Sum_probs=105.7

Q ss_pred             CceEEEEcC-CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcC-CCCEEEEEC
Q 014345           22 EPYSVEVLP-GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD-RGNIYIADT   99 (426)
Q Consensus        22 ~P~GIaVd~-dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~-dG~LYVADt   99 (426)
                      .|.+|++|+ +|.||++|..+++|++++.+|+   ...+++..               .+..|.|||+|. .++||++|.
T Consensus       350 ~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~---~~~~v~~~---------------~~~~p~GlAvD~~~~~lY~tD~  411 (619)
T 3s94_A          350 HAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGS---GSQFVVTA---------------QIAHPDGIAVDWVARNLYWTDT  411 (619)
T ss_dssp             SEEEEEEETTTTEEEEEETTTTEEEEEETTSC---SCEEEECS---------------SCSCCCEEEEETTTTEEEEEET
T ss_pred             ccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCC---ccEEEEEC---------------CCCCcCceEEecccCcEEEEeC
Confidence            799999998 7889999999999999999863   33444422               267899999995 788999999


Q ss_pred             CCCEEEEEc-CCCc-EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCC-CeEEEEEcCCCceEe--e
Q 014345          100 MNMAIRKIS-DSGV-TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGN-RAIREIQLHFDDCAY--Q  174 (426)
Q Consensus       100 ~N~rIrk~d-~g~V-stIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN-~rIr~I~l~~~~~~~--~  174 (426)
                      .+++|.+++ +|.. .++..                ..|..|.+|++.+..|.||++|+++ .+|.++.+++.....  .
T Consensus       412 ~~~~I~v~~~~G~~~~~l~~----------------~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~  475 (619)
T 3s94_A          412 GTDRIEVTRLNGTMRKILIS----------------EDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVN  475 (619)
T ss_dssp             TTTEEEEEETTSCSCEEEEC----------------TTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC
T ss_pred             CCCcEEEEeCCCCeEEEEEE----------------CCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEEe
Confidence            999999999 6664 44432                1377899999544469999999875 899999998865443  3


Q ss_pred             cCCCCcceEEEEecC
Q 014345          175 YGSSFPLGIAVLLAA  189 (426)
Q Consensus       175 ~~~g~P~GIAv~~g~  189 (426)
                      .....|.|||++...
T Consensus       476 ~~l~~P~GlalD~~~  490 (619)
T 3s94_A          476 TSLGWPNGLALDYDE  490 (619)
T ss_dssp             SSCSCEEEEEEETTT
T ss_pred             CCCCCCeeeEEcccC
Confidence            346789999999543

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.29  E-value=3.6e-11  Score=116.00  Aligned_cols=133  Identities=18%  Similarity=0.158  Sum_probs=97.0

Q ss_pred             CceEEEEcC-CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcC-CCCEEEEEC
Q 014345           22 EPYSVEVLP-GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD-RGNIYIADT   99 (426)
Q Consensus        22 ~P~GIaVd~-dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~-dG~LYVADt   99 (426)
                      .|.||++++ +|+|||+|.. +.|++++.++   +.+..++...       .+    ..++.|++|++|+ +|+|||+|.
T Consensus        81 ~p~gi~~~~~~g~l~v~d~~-~~i~~~d~~~---g~~~~~~~~~-------~~----~~~~~p~~i~~d~~~G~l~v~d~  145 (322)
T 2fp8_A           81 RTYDISYNLQNNQLYIVDCY-YHLSVVGSEG---GHATQLATSV-------DG----VPFKWLYAVTVDQRTGIVYFTDV  145 (322)
T ss_dssp             CEEEEEEETTTTEEEEEETT-TEEEEECTTC---EECEEEESEE-------TT----EECSCEEEEEECTTTCCEEEEES
T ss_pred             CCceEEEcCCCCcEEEEECC-CCEEEEeCCC---CEEEEecccC-------CC----CcccccceEEEecCCCEEEEECC
Confidence            699999997 8999999976 5699999874   4455554321       11    2478899999999 999999997


Q ss_pred             CC-----------------CEEEEEc-C-CCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCC-eEEEEECCCC
Q 014345          100 MN-----------------MAIRKIS-D-SGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSC-SLLVIDRGNR  159 (426)
Q Consensus       100 ~N-----------------~rIrk~d-~-g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G-~LYVaDsgN~  159 (426)
                      .+                 ++|.+++ + +.+..+..                 .+..|++|+ ++++| .|||+|+.++
T Consensus       146 ~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~-----------------~~~~p~gia-~~~dg~~lyv~d~~~~  207 (322)
T 2fp8_A          146 STLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLK-----------------ELHVPGGAE-VSADSSFVLVAEFLSH  207 (322)
T ss_dssp             CSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEE-----------------EESCCCEEE-ECTTSSEEEEEEGGGT
T ss_pred             cccccccccceehcccCCCceEEEEeCCCCEEEEecc-----------------CCccCcceE-ECCCCCEEEEEeCCCC
Confidence            63                 5788888 3 33444332                 255799999 67776 5999999999


Q ss_pred             eEEEEEcCCC---ce-EeecCCCCcceEEEEec
Q 014345          160 AIREIQLHFD---DC-AYQYGSSFPLGIAVLLA  188 (426)
Q Consensus       160 rIr~I~l~~~---~~-~~~~~~g~P~GIAv~~g  188 (426)
                      +|+++++.+.   .. .+....+ |.||+++..
T Consensus       208 ~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~  239 (322)
T 2fp8_A          208 QIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNAD  239 (322)
T ss_dssp             EEEEEESSSTTTTCEEEEEECSS-EEEEEECTT
T ss_pred             eEEEEECCCCcCCccceEEeCCC-CCCeEECCC
Confidence            9999998752   11 1112234 999999854

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.29  E-value=3.9e-10  Score=104.42  Aligned_cols=134  Identities=11%  Similarity=0.136  Sum_probs=101.4

Q ss_pred             CCceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECC
Q 014345           21 IEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTM  100 (426)
Q Consensus        21 ~~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~  100 (426)
                      ..|++|+++++|+|||++..++.|.+++.++    .+..+.-.              ..+..|.+|++|++|+|||++..
T Consensus       104 ~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g----~~~~~~~~--------------~~~~~~~~i~~d~~g~l~v~~~~  165 (300)
T 2qc5_A          104 SGPYGITEGLNGDIWFTQLNGDRIGKLTADG----TIYEYDLP--------------NKGSYPAFITLGSDNALWFTENQ  165 (300)
T ss_dssp             CCEEEEEECSTTCEEEEETTTTEEEEECTTS----CEEEEECS--------------STTCCEEEEEECTTSSEEEEETT
T ss_pred             CCCccceECCCCCEEEEccCCCeEEEECCCC----CEEEccCC--------------CCCCCceeEEECCCCCEEEEecC
Confidence            4799999999999999999899999999873    33333211              01457999999999999999999


Q ss_pred             CCEEEEEc-CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceEee--cCC
Q 014345          101 NMAIRKIS-DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQ--YGS  177 (426)
Q Consensus       101 N~rIrk~d-~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~~~~--~~~  177 (426)
                      ++.|.+++ ++.+..+...               ..+..|.+|+ ++++|+|||++..+++|.+++..+....+.  ...
T Consensus       166 ~~~i~~~~~~g~~~~~~~~---------------~~~~~~~~i~-~d~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~  229 (300)
T 2qc5_A          166 NNSIGRITNTGKLEEYPLP---------------TNAAAPVGIT-SGNDGALWFVEIMGNKIGRITTTGEISEYDIPTPN  229 (300)
T ss_dssp             TTEEEEECTTCCEEEEECS---------------STTCCEEEEE-ECTTSSEEEEETTTTEEEEECTTCCEEEEECSSTT
T ss_pred             CCeEEEECCCCcEEEeeCC---------------CCCCCcceEE-ECCCCCEEEEccCCCEEEEEcCCCcEEEEECCCCC
Confidence            99999999 5555544321               1245789998 688999999999999999999854433332  234


Q ss_pred             CCcceEEEEec
Q 014345          178 SFPLGIAVLLA  188 (426)
Q Consensus       178 g~P~GIAv~~g  188 (426)
                      ..|.+|+++..
T Consensus       230 ~~~~~i~~d~~  240 (300)
T 2qc5_A          230 ARPHAITAGKN  240 (300)
T ss_dssp             CCEEEEEECST
T ss_pred             CCceEEEECCC
Confidence            56888888744

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=99.27  E-value=9.1e-12  Score=135.35  Aligned_cols=134  Identities=16%  Similarity=0.118  Sum_probs=100.3

Q ss_pred             CCceEEEEcC-CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcC-CCCEEEEE
Q 014345           21 IEPYSVEVLP-GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD-RGNIYIAD   98 (426)
Q Consensus        21 ~~P~GIaVd~-dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~-dG~LYVAD   98 (426)
                      ..|.||||+. .|+|||+|..+++|.+++.+|.   ...+++..               .+..|+||++|+ .|.||++|
T Consensus       453 ~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~---~~~~l~~~---------------~~~~P~giavDp~~g~ly~td  514 (699)
T 1n7d_A          453 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV---KRKTLFRE---------------QGSKPRAIVVDPVHGFMYWTD  514 (699)
T ss_dssp             --CCCEECCCSSSBCEECCTTTSCEEEEBSSSC---CEEEECCC---------------SSCCCCCEECCSSSSCCEECC
T ss_pred             CCcceEEEEeeCCcEEEEeccCCeEEEEecCCC---ceEEEEeC---------------CCCCcceEEEccCCCcEEEcc
Confidence            3799999995 7889999999999999999853   23333321               267899999998 57899999


Q ss_pred             CCC-CEEEEEc-CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEEC-CCCeEEEEECCCCeEEEEEcCCCceEeec
Q 014345           99 TMN-MAIRKIS-DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIG-SSCSLLVIDRGNRAIREIQLHFDDCAYQY  175 (426)
Q Consensus        99 t~N-~rIrk~d-~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd-~~G~LYVaDsgN~rIr~I~l~~~~~~~~~  175 (426)
                      .++ ++|.+++ +|...++...               ..|..|++|+ ++ ..+.|||+|+.+++|.++++++.......
T Consensus       515 ~~~~~~I~~~~~dG~~~~~l~~---------------~~l~~PnGla-vd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~  578 (699)
T 1n7d_A          515 WGTPAKIKKGGLNGVDIYSLVT---------------ENIQWPNGIT-LDLLSGRLYWVDSKLHSISSIDVNGGNRKTIL  578 (699)
T ss_dssp             CSSSCCEEBCCSSSCCCCEESC---------------SSCSSCCCEE-ECTTTCCEEEEETTTTEEEEECSSSSCCEEEC
T ss_pred             cCCCCeEEEEeCCCCCeeEEEe---------------CCCCCccEEE-EeccCCEEEEEecCCCeEEEEccCCCceEEEE
Confidence            876 8999998 6553322221               1367899999 56 56899999999999999999875443322


Q ss_pred             ----CCCCcceEEEEec
Q 014345          176 ----GSSFPLGIAVLLA  188 (426)
Q Consensus       176 ----~~g~P~GIAv~~g  188 (426)
                          ....|.||+++..
T Consensus       579 ~~~~~~~~P~glavd~~  595 (699)
T 1n7d_A          579 EDEKRLAHPFSLAVFED  595 (699)
T ss_dssp             CCSSSCSSCCCCEEETT
T ss_pred             ecCCcCCCceEeEEECC
Confidence                3467999999744

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.27  E-value=1.9e-10  Score=108.48  Aligned_cols=148  Identities=16%  Similarity=0.122  Sum_probs=109.6

Q ss_pred             cCCcEEEEEecCCCCCCCceEEEEcCCCc-EEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCc
Q 014345            5 ESGYTVETVFDGSKLGIEPYSVEVLPGGE-LLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHP   83 (426)
Q Consensus         5 ~~G~tv~tv~~g~~l~~~P~GIaVd~dG~-LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P   83 (426)
                      .++..++.+..+..   .|.|++++++|+ ||+++..+++|++++.++   + ...+...                ...|
T Consensus        15 ~~~~~~~~l~~~~~---~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~---~-~~~~~~~----------------~~~~   71 (296)
T 3e5z_A           15 PAGAEARRLADGFT---WTEGPVYVPARSAVIFSDVRQNRTWAWSDDG---Q-LSPEMHP----------------SHHQ   71 (296)
T ss_dssp             CTTCCCEEEECCCS---SEEEEEEEGGGTEEEEEEGGGTEEEEEETTS---C-EEEEESS----------------CSSE
T ss_pred             CCCCcEEEEecCCc---cccCCeEeCCCCEEEEEeCCCCEEEEEECCC---C-eEEEECC----------------CCCc
Confidence            34566677776544   689999999998 999999999999999985   2 3344321                2358


Q ss_pred             ceEEEcCCCCEEEEECCCCEEEEEc--CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEEC-----
Q 014345           84 KGLTVDDRGNIYIADTMNMAIRKIS--DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDR-----  156 (426)
Q Consensus        84 ~GIaVd~dG~LYVADt~N~rIrk~d--~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDs-----  156 (426)
                      .+|+++++|+|||++..+++|.+++  ++.+..+.....            ...+..|.+|+ ++++|+|||+|.     
T Consensus        72 ~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~------------~~~~~~~~~i~-~d~~G~l~vtd~~~g~~  138 (296)
T 3e5z_A           72 NGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFE------------GKKLNSPNDVC-LAPDGSLWFSDPTYGID  138 (296)
T ss_dssp             EEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEET------------TEECCCCCCEE-ECTTSCEEEEECSHHHH
T ss_pred             ceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccC------------CCCCCCCCCEE-ECCCCCEEEECCccccc
Confidence            9999999999999999989999999  455655543211            12356789998 689999999975     


Q ss_pred             ------------CCCeEEEEEcCCCceEeecCCCCcceEEEEec
Q 014345          157 ------------GNRAIREIQLHFDDCAYQYGSSFPLGIAVLLA  188 (426)
Q Consensus       157 ------------gN~rIr~I~l~~~~~~~~~~~g~P~GIAv~~g  188 (426)
                                  ..+.|.+++..+...........|.||++...
T Consensus       139 ~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~gi~~s~d  182 (296)
T 3e5z_A          139 KPEEGYGGEMELPGRWVFRLAPDGTLSAPIRDRVKPNGLAFLPS  182 (296)
T ss_dssp             CGGGSSCCCCCSSSCEEEEECTTSCEEEEECCCSSEEEEEECTT
T ss_pred             cccccccccccCCCcEEEEECCCCCEEEeecCCCCCccEEECCC
Confidence                        24689999887443344455667888887643

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.22  E-value=1.4e-09  Score=100.55  Aligned_cols=135  Identities=15%  Similarity=0.211  Sum_probs=100.3

Q ss_pred             CCCceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEEC
Q 014345           20 GIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADT   99 (426)
Q Consensus        20 ~~~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt   99 (426)
                      ...|.+|+++++|.|||++..++.|.+++.++    ....+...              .....|.+|++|++|+|||++.
T Consensus        98 ~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g----~~~~~~~~--------------~~~~~~~~i~~~~~g~l~v~~~  159 (299)
T 2z2n_A           98 DSAPYGITEGPNGDIWFTEMNGNRIGRITDDG----KIREYELP--------------NKGSYPSFITLGSDNALWFTEN  159 (299)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTTC----CEEEEECS--------------STTCCEEEEEECTTSCEEEEET
T ss_pred             CCCceeeEECCCCCEEEEecCCceEEEECCCC----CEEEecCC--------------CCCCCCceEEEcCCCCEEEEeC
Confidence            34799999999999999999899999999853    33333211              0145699999999999999999


Q ss_pred             CCCEEEEEc-CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceEeec--C
Q 014345          100 MNMAIRKIS-DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQY--G  176 (426)
Q Consensus       100 ~N~rIrk~d-~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~~~~~--~  176 (426)
                      .++.|.+++ ++.+..+...               ..+..|.+|+ ++++|.|||++..++.|.++++.+....+..  .
T Consensus       160 ~~~~i~~~~~~g~~~~~~~~---------------~~~~~~~~i~-~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~  223 (299)
T 2z2n_A          160 QNNAIGRITESGDITEFKIP---------------TPASGPVGIT-KGNDDALWFVEIIGNKIGRITTSGEITEFKIPTP  223 (299)
T ss_dssp             TTTEEEEECTTCCEEEEECS---------------STTCCEEEEE-ECTTSSEEEEETTTTEEEEECTTCCEEEEECSST
T ss_pred             CCCEEEEEcCCCcEEEeeCC---------------CCCCcceeEE-ECCCCCEEEEccCCceEEEECCCCcEEEEECCCC
Confidence            899999999 5555544221               1244688998 6888999999999999999998443222211  2


Q ss_pred             CCCcceEEEEec
Q 014345          177 SSFPLGIAVLLA  188 (426)
Q Consensus       177 ~g~P~GIAv~~g  188 (426)
                      ...|.+|+++..
T Consensus       224 ~~~~~~i~~~~~  235 (299)
T 2z2n_A          224 NARPHAITAGAG  235 (299)
T ss_dssp             TCCEEEEEECST
T ss_pred             CCCceeEEECCC
Confidence            356888888743

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.21  E-value=1.6e-09  Score=100.25  Aligned_cols=131  Identities=16%  Similarity=0.209  Sum_probs=98.0

Q ss_pred             CCceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECC
Q 014345           21 IEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTM  100 (426)
Q Consensus        21 ~~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~  100 (426)
                      ..|.+|+++++|+|||++..++.|.+++.+    +++..+...              ..+..|.+|++|++|+|||++..
T Consensus       141 ~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~----g~~~~~~~~--------------~~~~~~~~i~~~~~g~l~v~~~~  202 (299)
T 2z2n_A          141 SYPSFITLGSDNALWFTENQNNAIGRITES----GDITEFKIP--------------TPASGPVGITKGNDDALWFVEII  202 (299)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTT----CCEEEEECS--------------STTCCEEEEEECTTSSEEEEETT
T ss_pred             CCCceEEEcCCCCEEEEeCCCCEEEEEcCC----CcEEEeeCC--------------CCCCcceeEEECCCCCEEEEccC
Confidence            479999999999999999988999999985    344433211              11557999999999999999998


Q ss_pred             CCEEEEEc-CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceEee--cCC
Q 014345          101 NMAIRKIS-DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQ--YGS  177 (426)
Q Consensus       101 N~rIrk~d-~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~~~~--~~~  177 (426)
                      ++.|.+++ ++.+..+...               ..+..|.+|+ ++++|+|||++..+++|.++++.+.-..+.  ...
T Consensus       203 ~~~i~~~~~~g~~~~~~~~---------------~~~~~~~~i~-~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~  266 (299)
T 2z2n_A          203 GNKIGRITTSGEITEFKIP---------------TPNARPHAIT-AGAGIDLWFTEWGANKIGRLTSNNIIEEYPIQIKS  266 (299)
T ss_dssp             TTEEEEECTTCCEEEEECS---------------STTCCEEEEE-ECSTTCEEEEETTTTEEEEEETTTEEEEEECSSSS
T ss_pred             CceEEEECCCCcEEEEECC---------------CCCCCceeEE-ECCCCCEEEeccCCceEEEECCCCceEEEeCCCCC
Confidence            99999999 5555444221               1245689998 688999999999999999999854322221  223


Q ss_pred             CCcceEEE
Q 014345          178 SFPLGIAV  185 (426)
Q Consensus       178 g~P~GIAv  185 (426)
                      ..|.++++
T Consensus       267 ~~~~~i~~  274 (299)
T 2z2n_A          267 AEPHGICF  274 (299)
T ss_dssp             CCEEEEEE
T ss_pred             CccceEEe
Confidence            45777777

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=99.21  E-value=6.7e-11  Score=128.54  Aligned_cols=114  Identities=19%  Similarity=0.224  Sum_probs=88.0

Q ss_pred             CCceEEEEcC-CCcEEEEECCC-CeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCC-CCEEEE
Q 014345           21 IEPYSVEVLP-GGELLILDSAN-SNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDR-GNIYIA   97 (426)
Q Consensus        21 ~~P~GIaVd~-dG~LYVaD~~n-~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~d-G~LYVA   97 (426)
                      ..|.+|+||+ .|.||++|..+ ++|.+++.+|..   ..+++.               ..|..|+|||+|++ +.|||+
T Consensus       496 ~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~---~~~l~~---------------~~l~~PnGlavd~~~~~LY~a  557 (699)
T 1n7d_A          496 SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD---IYSLVT---------------ENIQWPNGITLDLLSGRLYWV  557 (699)
T ss_dssp             CCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC---CCEESC---------------SSCSSCCCEEECTTTCCEEEE
T ss_pred             CCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC---eeEEEe---------------CCCCCccEEEEeccCCEEEEE
Confidence            3799999998 57899999876 899999988532   222221               13778999999974 789999


Q ss_pred             ECCCCEEEEEc-CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCC
Q 014345           98 DTMNMAIRKIS-DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHF  168 (426)
Q Consensus        98 Dt~N~rIrk~d-~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~  168 (426)
                      |+.+++|.+++ +|. ..+++..              ...+..|.+|+ ++. +.||++|+++++|.++++..
T Consensus       558 D~~~~~I~~~d~dG~~~~~~~~~--------------~~~~~~P~gla-vd~-~~lywtd~~~~~V~~~d~~~  614 (699)
T 1n7d_A          558 DSKLHSISSIDVNGGNRKTILED--------------EKRLAHPFSLA-VFE-DKVFWTDIINEAIFSANRLT  614 (699)
T ss_dssp             ETTTTEEEEECSSSSCCEEECCC--------------SSSCSSCCCCE-EET-TEEEEECSTTTCEEEEETTT
T ss_pred             ecCCCeEEEEccCCCceEEEEec--------------CCcCCCceEeE-EEC-CEEEEEeCCCCeEEEEEccC
Confidence            99999999999 655 4444321              12466899999 454 59999999999999999753

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.20  E-value=5.5e-10  Score=107.44  Aligned_cols=114  Identities=14%  Similarity=0.098  Sum_probs=87.1

Q ss_pred             CCCceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEEC
Q 014345           20 GIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADT   99 (426)
Q Consensus        20 ~~~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt   99 (426)
                      +..|.|++++++|+|||+|..+++|++++.++.    ...++...                ..|.||+++++|+|||||.
T Consensus        31 ~~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~----~~~~~~~~----------------~~p~gia~~~dG~l~vad~   90 (306)
T 2p4o_A           31 NTFLENLASAPDGTIFVTNHEVGEIVSITPDGN----QQIHATVE----------------GKVSGLAFTSNGDLVATGW   90 (306)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTTCC----EEEEEECS----------------SEEEEEEECTTSCEEEEEE
T ss_pred             CCCcceEEECCCCCEEEEeCCCCeEEEECCCCc----eEEEEeCC----------------CCceeEEEcCCCcEEEEec
Confidence            347999999999999999999999999999853    33333221                1499999999999999997


Q ss_pred             CCC--EEEEEc--CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCC
Q 014345          100 MNM--AIRKIS--DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFD  169 (426)
Q Consensus       100 ~N~--rIrk~d--~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~  169 (426)
                      .++  +|.+++  ++.+..++...               ....|.+++ +...+.+||+|..+++|++++....
T Consensus        91 ~~~~~~v~~~d~~~g~~~~~~~~~---------------~~~~~~g~~-~~~~~~~~v~d~~~g~i~~~d~~~~  148 (306)
T 2p4o_A           91 NADSIPVVSLVKSDGTVETLLTLP---------------DAIFLNGIT-PLSDTQYLTADSYRGAIWLIDVVQP  148 (306)
T ss_dssp             CTTSCEEEEEECTTSCEEEEEECT---------------TCSCEEEEE-ESSSSEEEEEETTTTEEEEEETTTT
T ss_pred             cCCcceEEEEcCCCCeEEEEEeCC---------------CccccCccc-ccCCCcEEEEECCCCeEEEEeCCCC
Confidence            654  588876  55566665421               123467777 5677899999998999999998754

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.20  E-value=2.2e-10  Score=110.42  Aligned_cols=117  Identities=7%  Similarity=-0.005  Sum_probs=87.2

Q ss_pred             CCceEEEEcCCCc-EEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEEC
Q 014345           21 IEPYSVEVLPGGE-LLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADT   99 (426)
Q Consensus        21 ~~P~GIaVd~dG~-LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt   99 (426)
                      ..|+||+++++|+ |||+|..+++|++++.++...+....++.                 +..|.||++|++|+||||+.
T Consensus       185 ~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~-----------------~~gP~gi~~d~~G~l~va~~  247 (322)
T 2fp8_A          185 HVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-----------------IPNPGNIKRNADGHFWVSSS  247 (322)
T ss_dssp             SCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE-----------------CSSEEEEEECTTSCEEEEEE
T ss_pred             ccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe-----------------CCCCCCeEECCCCCEEEEec
Confidence            3799999999987 99999999999999988543233333321                 11289999999999999997


Q ss_pred             C----------CCEEEEEc-CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCC
Q 014345          100 M----------NMAIRKIS-DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHF  168 (426)
Q Consensus       100 ~----------N~rIrk~d-~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~  168 (426)
                      .          +++|.+++ ++.+........        |    ..+..|.+++.  .++.|||++..+++|.++++..
T Consensus       248 ~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~--------g----~~~~~~~~~~~--~~g~L~v~~~~~~~i~~~~~~~  313 (322)
T 2fp8_A          248 EELDGNMHGRVDPKGIKFDEFGNILEVIPLPP--------P----FAGEHFEQIQE--HDGLLYIGTLFHGSVGILVYDK  313 (322)
T ss_dssp             EETTSSTTSCEEEEEEEECTTSCEEEEEECCT--------T----TTTSCCCEEEE--ETTEEEEECSSCSEEEEEEC--
T ss_pred             CcccccccCCCccEEEEECCCCCEEEEEECCC--------C----CccccceEEEE--eCCEEEEeecCCCceEEEeccc
Confidence            6          67899999 666543333211        1    12677888874  4789999999999999999864

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.18  E-value=4.4e-10  Score=107.48  Aligned_cols=146  Identities=11%  Similarity=0.114  Sum_probs=108.2

Q ss_pred             CcEEEEEecCCCCCCCceEEEEcCCCc-EEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcce
Q 014345            7 GYTVETVFDGSKLGIEPYSVEVLPGGE-LLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKG   85 (426)
Q Consensus         7 G~tv~tv~~g~~l~~~P~GIaVd~dG~-LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~G   85 (426)
                      +..++.+..+..   .+.|.+.+++|+ ||++|..+++|++++.++    .+..+...                -..|++
T Consensus        34 ~~~~~~l~~~~~---~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g----~~~~~~~~----------------~~~~~g   90 (305)
T 3dr2_A           34 DARLLTLYDQAT---WSEGPAWWEAQRTLVWSDLVGRRVLGWREDG----TVDVLLDA----------------TAFTNG   90 (305)
T ss_dssp             TCCCEEEECCCS---SEEEEEEEGGGTEEEEEETTTTEEEEEETTS----CEEEEEES----------------CSCEEE
T ss_pred             CCceEEEecCCc---CccCCeEeCCCCEEEEEECCCCEEEEEeCCC----CEEEEeCC----------------CCccce
Confidence            456777887766   578999999988 999999999999999864    33444321                234899


Q ss_pred             EEEcCCCCEEEEECCCCEEEEEc-CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEEC--------
Q 014345           86 LTVDDRGNIYIADTMNMAIRKIS-DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDR--------  156 (426)
Q Consensus        86 IaVd~dG~LYVADt~N~rIrk~d-~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDs--------  156 (426)
                      +++|++|+|||++..+++|.+++ ++.+.+++....            ...++.|++|+ ++++|+|||+|.        
T Consensus        91 l~~d~dG~l~v~~~~~~~v~~~~~~g~~~~~~~~~~------------~~~~~~~~~i~-~d~dG~l~~td~~~g~~~~~  157 (305)
T 3dr2_A           91 NAVDAQQRLVHCEHGRRAITRSDADGQAHLLVGRYA------------GKRLNSPNDLI-VARDGAIWFTDPPFGLRKPS  157 (305)
T ss_dssp             EEECTTSCEEEEETTTTEEEEECTTSCEEEEECEET------------TEECSCCCCEE-ECTTSCEEEECCSGGGSCGG
T ss_pred             eeECCCCCEEEEECCCCEEEEECCCCCEEEEEeccC------------CCccCCCCCEE-ECCCCCEEEeCcCCCccccc
Confidence            99999999999999989999999 666666654211            12467899998 799999999984        


Q ss_pred             ---------CCCeEEEEEcCCCceEeecCCCCcceEEEEec
Q 014345          157 ---------GNRAIREIQLHFDDCAYQYGSSFPLGIAVLLA  188 (426)
Q Consensus       157 ---------gN~rIr~I~l~~~~~~~~~~~g~P~GIAv~~g  188 (426)
                               ..+.|.++++.+...........|.|+++...
T Consensus       158 ~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~p~gl~~spd  198 (305)
T 3dr2_A          158 QGCPADPELAHHSVYRLPPDGSPLQRMADLDHPNGLAFSPD  198 (305)
T ss_dssp             GSCCCCCSSSCEEEEEECSSSCCCEEEEEESSEEEEEECTT
T ss_pred             cccccccccCCCeEEEEcCCCCcEEEEecCCCCcceEEcCC
Confidence                     23679999985443332215567888887543

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.17  E-value=2.3e-09  Score=101.01  Aligned_cols=135  Identities=16%  Similarity=0.178  Sum_probs=99.3

Q ss_pred             CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEEC--
Q 014345           22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADT--   99 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt--   99 (426)
                      .|.+|+++++|+|||++..+++|.+++...   +++..+....       .    ...++.|++|++|++|+|||+|.  
T Consensus        70 ~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~---g~~~~~~~~~-------~----~~~~~~~~~i~~d~~G~l~vtd~~~  135 (296)
T 3e5z_A           70 HQNGHCLNKQGHLIACSHGLRRLERQREPG---GEWESIADSF-------E----GKKLNSPNDVCLAPDGSLWFSDPTY  135 (296)
T ss_dssp             SEEEEEECTTCCEEEEETTTTEEEEECSTT---CCEEEEECEE-------T----TEECCCCCCEEECTTSCEEEEECSH
T ss_pred             CcceeeECCCCcEEEEecCCCeEEEEcCCC---CcEEEEeecc-------C----CCCCCCCCCEEECCCCCEEEECCcc
Confidence            699999999999999999889999999843   4444444321       0    12367899999999999999986  


Q ss_pred             ---------------CCCEEEEEc-CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEE
Q 014345          100 ---------------MNMAIRKIS-DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIRE  163 (426)
Q Consensus       100 ---------------~N~rIrk~d-~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~  163 (426)
                                     ..++|.+++ ++.+..+..                 .+..|++|+ +++++.++|+|..+++|++
T Consensus       136 g~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~-----------------~~~~~~gi~-~s~dg~~lv~~~~~~~i~~  197 (296)
T 3e5z_A          136 GIDKPEEGYGGEMELPGRWVFRLAPDGTLSAPIR-----------------DRVKPNGLA-FLPSGNLLVSDTGDNATHR  197 (296)
T ss_dssp             HHHCGGGSSCCCCCSSSCEEEEECTTSCEEEEEC-----------------CCSSEEEEE-ECTTSCEEEEETTTTEEEE
T ss_pred             ccccccccccccccCCCcEEEEECCCCCEEEeec-----------------CCCCCccEE-ECCCCCEEEEeCCCCeEEE
Confidence                           245899998 555555543                 244688998 6888877799999999999


Q ss_pred             EEcCC-Cce-----EeecCCCCcceEEEEec
Q 014345          164 IQLHF-DDC-----AYQYGSSFPLGIAVLLA  188 (426)
Q Consensus       164 I~l~~-~~~-----~~~~~~g~P~GIAv~~g  188 (426)
                      +++.. ...     ......+.|.+|+++..
T Consensus       198 ~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~  228 (296)
T 3e5z_A          198 YCLNARGETEYQGVHFTVEPGKTDGLRVDAG  228 (296)
T ss_dssp             EEECSSSCEEEEEEEECCSSSCCCSEEEBTT
T ss_pred             EEECCCCcCcCCCeEeeCCCCCCCeEEECCC
Confidence            99862 222     11223467899999844

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.14  E-value=1.5e-09  Score=103.84  Aligned_cols=133  Identities=17%  Similarity=0.219  Sum_probs=97.6

Q ss_pred             CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECC-
Q 014345           22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTM-  100 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~-  100 (426)
                      .|.+++++++|+|||++..+++|.+++.++    .+..++...       .+    ..++.|++|+++++|+|||+|.. 
T Consensus        87 ~~~gl~~d~dG~l~v~~~~~~~v~~~~~~g----~~~~~~~~~-------~~----~~~~~~~~i~~d~dG~l~~td~~~  151 (305)
T 3dr2_A           87 FTNGNAVDAQQRLVHCEHGRRAITRSDADG----QAHLLVGRY-------AG----KRLNSPNDLIVARDGAIWFTDPPF  151 (305)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTS----CEEEEECEE-------TT----EECSCCCCEEECTTSCEEEECCSG
T ss_pred             ccceeeECCCCCEEEEECCCCEEEEECCCC----CEEEEEecc-------CC----CccCCCCCEEECCCCCEEEeCcCC
Confidence            699999999999999999889999999873    445554321       11    24788999999999999999841 


Q ss_pred             ----------------CCEEEEEc--CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCC-eEEEEECCC---
Q 014345          101 ----------------NMAIRKIS--DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSC-SLLVIDRGN---  158 (426)
Q Consensus       101 ----------------N~rIrk~d--~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G-~LYVaDsgN---  158 (426)
                                      ...|.+++  .+.+..+. .                 +..|++|+ +++++ .|||+|+.+   
T Consensus       152 g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~-----------------~~~p~gl~-~spdg~~lyv~~~~~~~~  212 (305)
T 3dr2_A          152 GLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-D-----------------LDHPNGLA-FSPDEQTLYVSQTPEQGH  212 (305)
T ss_dssp             GGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-E-----------------ESSEEEEE-ECTTSSEEEEEECCC---
T ss_pred             CccccccccccccccCCCeEEEEcCCCCcEEEEe-c-----------------CCCCcceE-EcCCCCEEEEEecCCcCC
Confidence                            35788888  34455543 1                 33688998 56666 599999974   


Q ss_pred             --CeEEEEEcCCCceE-----eecCCCCcceEEEEec
Q 014345          159 --RAIREIQLHFDDCA-----YQYGSSFPLGIAVLLA  188 (426)
Q Consensus       159 --~rIr~I~l~~~~~~-----~~~~~g~P~GIAv~~g  188 (426)
                        ++|+++++......     .....+.|.||+++..
T Consensus       213 ~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~  249 (305)
T 3dr2_A          213 GSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRG  249 (305)
T ss_dssp             CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTT
T ss_pred             CCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCC
Confidence              89999998754311     1223567999998844

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=99.13  E-value=1.4e-09  Score=108.72  Aligned_cols=152  Identities=22%  Similarity=0.255  Sum_probs=105.9

Q ss_pred             ecCCcEEEEEecCCCCCCCceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCc
Q 014345            4 FESGYTVETVFDGSKLGIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHP   83 (426)
Q Consensus         4 ~~~G~tv~tv~~g~~l~~~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P   83 (426)
                      ...++.++.++.+..   .|.+|+++++|.|||+|.. ++|++++.+    |. ..+++.....          ..+..|
T Consensus        15 ~~~~~~~~~va~~l~---~P~~ia~~pdG~l~V~e~~-g~I~~~d~~----G~-~~~~~~~v~~----------~g~~g~   75 (354)
T 3a9g_A           15 EEWKFKISEVASDLE---VPWSIAPLGGGRYLVTERP-GRLVLISPS----GK-KLVASFDVAN----------VGEAGL   75 (354)
T ss_dssp             -CCCEEEEEEECSCS---CEEEEEEEETTEEEEEETT-TEEEEECSS----CE-EEEEECCCCC----------STTCSE
T ss_pred             CCCCeEEEEEeCCCC---CCeEEEEcCCCeEEEEeCC-CEEEEEeCC----Cc-eEeeccceee----------cCCCce
Confidence            356788998888533   8999999999999999976 899999866    34 4454321000          114569


Q ss_pred             ceEEEcCC----CCEEEEECC---C----CEEEEEc-CCC------cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEE
Q 014345           84 KGLTVDDR----GNIYIADTM---N----MAIRKIS-DSG------VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYI  145 (426)
Q Consensus        84 ~GIaVd~d----G~LYVADt~---N----~rIrk~d-~g~------VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~v  145 (426)
                      .||+++++    |.|||+++.   +    ++|.+++ ++.      ..++..+..            ......|.+|+ +
T Consensus        76 ~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~------------~~~~h~~~~l~-~  142 (354)
T 3a9g_A           76 LGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIP------------GAYIHNGGRIR-F  142 (354)
T ss_dssp             EEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEE------------CCSSCCCCCEE-E
T ss_pred             eeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCC------------CCCCcCCceEE-E
Confidence            99999996    899999974   4    7899888 433      222321100            01234578898 6


Q ss_pred             CCCCeEEEEECC-------------CCeEEEEEcCCC---------ceEeecCCCCcceEEEEe
Q 014345          146 GSSCSLLVIDRG-------------NRAIREIQLHFD---------DCAYQYGSSFPLGIAVLL  187 (426)
Q Consensus       146 d~~G~LYVaDsg-------------N~rIr~I~l~~~---------~~~~~~~~g~P~GIAv~~  187 (426)
                      +++|.|||++..             +++|.+|++++.         ...+..+.-.|.||+++.
T Consensus       143 ~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~rnp~Gla~d~  206 (354)
T 3a9g_A          143 GPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIWSYGHRNPQGIDWHR  206 (354)
T ss_dssp             CTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEEECCSCCCEEEECT
T ss_pred             CCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEEccCCcceEEEeC
Confidence            899999999632             368999998764         123455666799999986

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=99.09  E-value=1.6e-09  Score=107.78  Aligned_cols=152  Identities=18%  Similarity=0.223  Sum_probs=103.8

Q ss_pred             CCcEEEEEecCCCCCCCceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcce
Q 014345            6 SGYTVETVFDGSKLGIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKG   85 (426)
Q Consensus         6 ~G~tv~tv~~g~~l~~~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~G   85 (426)
                      ..+.++.++.+..   .|.+|+++++|.|||+|.. ++|++++ +    +....+++.....          ..+..|.|
T Consensus        19 ~~~~~~~va~~l~---~P~~ia~~pdG~l~V~e~~-g~I~~i~-~----g~~~~~~~~~v~~----------~g~~~p~g   79 (352)
T 2ism_A           19 QGLRVEEVVGGLE---VPWALAFLPDGGMLIAERP-GRIRLFR-E----GRLSTYAELSVYH----------RGESGLLG   79 (352)
T ss_dssp             -CCCEEEEECCCS---CEEEEEECTTSCEEEEETT-TEEEEEE-T----TEEEEEEECCCCC----------STTCSEEE
T ss_pred             CCcEEEEEECCCC---CceEEEEcCCCeEEEEeCC-CeEEEEE-C----CCccEeecceEee----------cCCCCcee
Confidence            3567788887533   8999999999999999975 8999998 5    3445554432000          12567999


Q ss_pred             EEEcCC----CCEEEEECCC-----CEEEEEc-CCC-c---EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeE
Q 014345           86 LTVDDR----GNIYIADTMN-----MAIRKIS-DSG-V---TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSL  151 (426)
Q Consensus        86 IaVd~d----G~LYVADt~N-----~rIrk~d-~g~-V---stIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~L  151 (426)
                      |+++++    +.|||+++.+     ++|.+++ ++. +   .++..+...          .......|.+|+ ++++|.|
T Consensus        80 ia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~----------~~~~~h~~~~l~-~~pdG~L  148 (352)
T 2ism_A           80 LALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPA----------RPHGLHSGGRIA-FGPDGML  148 (352)
T ss_dssp             EEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECC----------CTTCCCCCCCEE-ECTTSCE
T ss_pred             EEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCC----------CCCCCcCCceEE-ECCCCCE
Confidence            999997    8899999865     7899998 432 2   223221000          011244678998 6899999


Q ss_pred             EEEECC-------------CCeEEEEEcCCC--------------ceEeecCCCCcceEEEEe
Q 014345          152 LVIDRG-------------NRAIREIQLHFD--------------DCAYQYGSSFPLGIAVLL  187 (426)
Q Consensus       152 YVaDsg-------------N~rIr~I~l~~~--------------~~~~~~~~g~P~GIAv~~  187 (426)
                      ||++..             .++|.+|++++.              ...+..+.-.|.|||++.
T Consensus       149 yv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~  211 (352)
T 2ism_A          149 YVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHP  211 (352)
T ss_dssp             EEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECCSEECCCEECT
T ss_pred             EEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcCCCcccEEEEC
Confidence            999732             368999998761              123344555688999886

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.09  E-value=5.5e-09  Score=100.45  Aligned_cols=140  Identities=11%  Similarity=-0.012  Sum_probs=96.5

Q ss_pred             CceEEEEcCCCcEEEEECCCC--eEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEEC
Q 014345           22 EPYSVEVLPGGELLILDSANS--NLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADT   99 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n~--rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt   99 (426)
                      .|+||+++++|+|||+|..++  +|++++...   +++..++...              ....|.|+++..++.+||+|.
T Consensus        73 ~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~---g~~~~~~~~~--------------~~~~~~g~~~~~~~~~~v~d~  135 (306)
T 2p4o_A           73 KVSGLAFTSNGDLVATGWNADSIPVVSLVKSD---GTVETLLTLP--------------DAIFLNGITPLSDTQYLTADS  135 (306)
T ss_dssp             EEEEEEECTTSCEEEEEECTTSCEEEEEECTT---SCEEEEEECT--------------TCSCEEEEEESSSSEEEEEET
T ss_pred             CceeEEEcCCCcEEEEeccCCcceEEEEcCCC---CeEEEEEeCC--------------CccccCcccccCCCcEEEEEC
Confidence            799999999999999997654  599988653   4555555431              133478999988888999999


Q ss_pred             CCCEEEEEc-CCC---cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCc----e
Q 014345          100 MNMAIRKIS-DSG---VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDD----C  171 (426)
Q Consensus       100 ~N~rIrk~d-~g~---VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~----~  171 (426)
                      .+++|++++ .++   +....+.  .. ..     .....|..|++|.  .+.+.|||+|+.+++|++++++...    .
T Consensus       136 ~~g~i~~~d~~~~~~~v~~~~~~--~~-~~-----~~~~~~~~pngis--~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~  205 (306)
T 2p4o_A          136 YRGAIWLIDVVQPSGSIWLEHPM--LA-RS-----NSESVFPAANGLK--RFGNFLYVSNTEKMLLLRIPVDSTDKPGEP  205 (306)
T ss_dssp             TTTEEEEEETTTTEEEEEEECGG--GS-CS-----STTCCSCSEEEEE--EETTEEEEEETTTTEEEEEEBCTTSCBCCC
T ss_pred             CCCeEEEEeCCCCcEeEEEECCc--cc-cc-----cccCCCCcCCCcC--cCCCEEEEEeCCCCEEEEEEeCCCCCCCcc
Confidence            899999999 332   2222221  00 00     0123467899983  3456899999999999999987521    1


Q ss_pred             EeecCCCCcceEEEEec
Q 014345          172 AYQYGSSFPLGIAVLLA  188 (426)
Q Consensus       172 ~~~~~~g~P~GIAv~~g  188 (426)
                      ........|.|||++..
T Consensus       206 ~~~~~~~~P~gi~vd~d  222 (306)
T 2p4o_A          206 EIFVEQTNIDDFAFDVE  222 (306)
T ss_dssp             EEEEESCCCSSEEEBTT
T ss_pred             EEEeccCCCCCeEECCC
Confidence            11222357999999854

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.00  E-value=7.6e-09  Score=97.03  Aligned_cols=137  Identities=15%  Similarity=0.192  Sum_probs=96.1

Q ss_pred             CceEEEEcCCCcEEEE-------ECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCC-CC
Q 014345           22 EPYSVEVLPGGELLIL-------DSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDR-GN   93 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVa-------D~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~d-G~   93 (426)
                      .|.+++++++|+|||+       +..+++|++++...   +++..+...  ..    .+     ....|.+|+++++ |+
T Consensus        19 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~---g~~~~~~~~--~~----~~-----~~~~~~~i~~~~~~g~   84 (314)
T 1pjx_A           19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKT---GKKTVICKP--EV----NG-----YGGIPAGCQCDRDANQ   84 (314)
T ss_dssp             TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTT---CCEEEEECC--EE----TT-----EECCEEEEEECSSSSE
T ss_pred             CccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCC---CcEEEEEec--cc----CC-----CCCCCceEEEecCCCc
Confidence            7999999999999999       88889999999653   344443320  00    01     1346999999999 99


Q ss_pred             EEEEECCCCEEEEEc-CCCcEEE-eCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCC-------------
Q 014345           94 IYIADTMNMAIRKIS-DSGVTTI-AGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGN-------------  158 (426)
Q Consensus        94 LYVADt~N~rIrk~d-~g~VstI-aGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN-------------  158 (426)
                      |||++..+ .|.+++ ++.+..+ .....            ...+..|++|+ ++++|+|||++..+             
T Consensus        85 l~v~~~~~-~l~~~d~~g~~~~~~~~~~~------------~~~~~~~~~i~-~d~~g~l~v~~~~~~~~~~~~~~~~~~  150 (314)
T 1pjx_A           85 LFVADMRL-GLLVVQTDGTFEEIAKKDSE------------GRRMQGCNDCA-FDYEGNLWITAPAGEVAPADYTRSMQE  150 (314)
T ss_dssp             EEEEETTT-EEEEEETTSCEEECCSBCTT------------SCBCBCCCEEE-ECTTSCEEEEECBCBCTTSCCCBTTSS
T ss_pred             EEEEECCC-CEEEEeCCCCEEEEEeccCC------------CccccCCcCEE-ECCCCCEEEEecCcccccccccccccC
Confidence            99999854 899998 6445444 32110            11345789998 68999999999865             


Q ss_pred             --CeEEEEEcCCCceEeecCCCCcceEEEE
Q 014345          159 --RAIREIQLHFDDCAYQYGSSFPLGIAVL  186 (426)
Q Consensus       159 --~rIr~I~l~~~~~~~~~~~g~P~GIAv~  186 (426)
                        +.|.+++..+...........|.++++.
T Consensus       151 ~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~  180 (314)
T 1pjx_A          151 KFGSIYCFTTDGQMIQVDTAFQFPNGIAVR  180 (314)
T ss_dssp             SCEEEEEECTTSCEEEEEEEESSEEEEEEE
T ss_pred             CCCeEEEECCCCCEEEeccCCCCcceEEEe
Confidence              6899998774322233344567788776

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.00  E-value=5e-09  Score=99.93  Aligned_cols=131  Identities=11%  Similarity=0.058  Sum_probs=92.2

Q ss_pred             CCceEEEEcCCCcEEEEEC-----------CCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEc
Q 014345           21 IEPYSVEVLPGGELLILDS-----------ANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVD   89 (426)
Q Consensus        21 ~~P~GIaVd~dG~LYVaD~-----------~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd   89 (426)
                      ..|+++++|++|+|||++.           ..++|++++.++    .+..+...                +..|+||+++
T Consensus        98 ~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g----~~~~~~~~----------------~~~pngi~~s  157 (297)
T 3g4e_A           98 NRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH----HVKKYFDQ----------------VDISNGLDWS  157 (297)
T ss_dssp             EEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS----CEEEEEEE----------------ESBEEEEEEC
T ss_pred             CCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCC----CEEEEeec----------------cccccceEEc
Confidence            4689999999999999984           345899998873    33333321                5569999999


Q ss_pred             CCCC-EEEEECCCCEEEEEc-C---CCcE---EEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeE
Q 014345           90 DRGN-IYIADTMNMAIRKIS-D---SGVT---TIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAI  161 (426)
Q Consensus        90 ~dG~-LYVADt~N~rIrk~d-~---g~Vs---tIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rI  161 (426)
                      ++|+ |||+|+.+++|++++ +   |.+.   .++...              .....|.+|+ +|++|+|||++.++++|
T Consensus       158 pdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~--------------~~~~~p~g~~-~d~~G~lwva~~~~~~v  222 (297)
T 3g4e_A          158 LDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLE--------------KEEQIPDGMC-IDAEGKLWVACYNGGRV  222 (297)
T ss_dssp             TTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECC--------------GGGCEEEEEE-EBTTSCEEEEEETTTEE
T ss_pred             CCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECC--------------CCCCCCCeeE-ECCCCCEEEEEcCCCEE
Confidence            9986 999999999999997 3   2221   121100              0113588998 79999999999999999


Q ss_pred             EEEEcCCCceE-e-ecCCCCcceEEEE
Q 014345          162 REIQLHFDDCA-Y-QYGSSFPLGIAVL  186 (426)
Q Consensus       162 r~I~l~~~~~~-~-~~~~g~P~GIAv~  186 (426)
                      .+++++..... . ......|..+|+.
T Consensus       223 ~~~d~~tG~~~~~i~~p~~~~t~~~f~  249 (297)
T 3g4e_A          223 IRLDPVTGKRLQTVKLPVDKTTSCCFG  249 (297)
T ss_dssp             EEECTTTCCEEEEEECSSSBEEEEEEE
T ss_pred             EEEcCCCceEEEEEECCCCCceEEEEe
Confidence            99999743332 2 2222356666654

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.96  E-value=1.3e-08  Score=97.00  Aligned_cols=134  Identities=11%  Similarity=0.086  Sum_probs=95.0

Q ss_pred             CCceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECC
Q 014345           21 IEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTM  100 (426)
Q Consensus        21 ~~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~  100 (426)
                      ..|.+|+++++|+|||+.  .+.|.+++.++   +.+..++....       +    ..++.|++|++|++|+|||++..
T Consensus        54 ~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~---g~~~~~~~~~~-------~----~~~~~~~di~~d~dG~l~~~~~~  117 (297)
T 3g4e_A           54 APVSSVALRQSGGYVATI--GTKFCALNWKE---QSAVVLATVDN-------D----KKNNRFNDGKVDPAGRYFAGTMA  117 (297)
T ss_dssp             SCEEEEEEBTTSSEEEEE--TTEEEEEETTT---TEEEEEEECCT-------T----CSSEEEEEEEECTTSCEEEEEEE
T ss_pred             CceEEEEECCCCCEEEEE--CCeEEEEECCC---CcEEEEEecCC-------C----CCCCCCCCEEECCCCCEEEecCC
Confidence            479999999999999997  57999999874   44555543210       1    12567899999999999999843


Q ss_pred             -----------CCEEEEEc-CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCC-eEEEEECCCCeEEEEEcC
Q 014345          101 -----------NMAIRKIS-DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSC-SLLVIDRGNRAIREIQLH  167 (426)
Q Consensus       101 -----------N~rIrk~d-~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G-~LYVaDsgN~rIr~I~l~  167 (426)
                                 ..+|.+++ ++.+..+..                 .+..|++|+ +++++ .|||+|+.+++|++++.+
T Consensus       118 ~~~~~~~~~~~~~~l~~~d~~g~~~~~~~-----------------~~~~pngi~-~spdg~~lyv~~~~~~~i~~~~~d  179 (297)
T 3g4e_A          118 EETAPAVLERHQGALYSLFPDHHVKKYFD-----------------QVDISNGLD-WSLDHKIFYYIDSLSYSVDAFDYD  179 (297)
T ss_dssp             CCSBTTBCCTTCEEEEEECTTSCEEEEEE-----------------EESBEEEEE-ECTTSCEEEEEEGGGTEEEEEEEC
T ss_pred             cccccccccCCCcEEEEEECCCCEEEEee-----------------ccccccceE-EcCCCCEEEEecCCCCcEEEEecc
Confidence                       35788888 555554432                 244689999 56666 699999999999999874


Q ss_pred             --CCceE----e---ecCCCCcceEEEEec
Q 014345          168 --FDDCA----Y---QYGSSFPLGIAVLLA  188 (426)
Q Consensus       168 --~~~~~----~---~~~~g~P~GIAv~~g  188 (426)
                        .....    .   ....+.|.|++++..
T Consensus       180 ~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~  209 (297)
T 3g4e_A          180 LQTGQISNRRSVYKLEKEEQIPDGMCIDAE  209 (297)
T ss_dssp             TTTCCEEEEEEEEECCGGGCEEEEEEEBTT
T ss_pred             CCCCcccCcEEEEECCCCCCCCCeeEECCC
Confidence              22111    1   112357999999843

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=98.94  E-value=1.7e-08  Score=100.56  Aligned_cols=159  Identities=13%  Similarity=0.128  Sum_probs=102.7

Q ss_pred             eeecCCcEEEEEecCCCCCCCceEEEEcCCCc-EEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCccccccc
Q 014345            2 MKFESGYTVETVFDGSKLGIEPYSVEVLPGGE-LLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARM   80 (426)
Q Consensus         2 vk~~~G~tv~tv~~g~~l~~~P~GIaVd~dG~-LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~L   80 (426)
                      +++.+|+.++.++.+..   .|.+|+++++|+ |||++. .++|++++.++..   ...+++...-.         ....
T Consensus         2 ~~~p~g~~~~~va~~l~---~P~~i~~~pdG~~l~V~e~-~G~i~~~~~~g~~---~~~~~~~~~v~---------~~g~   65 (353)
T 2g8s_A            2 AMAPATVNVEVLQDKLD---HPWALAFLPDNHGMLITLR-GGELRHWQAGKGL---SAPLSGVPDVW---------AHGQ   65 (353)
T ss_dssp             ----CCSEEEEEEEEES---SEEEEEECSTTCCEEEEET-TTEEEEEETTTEE---CCCCBSCCCCC---------CSTT
T ss_pred             CCCCCCcEEEEEECCCC---CcEEEEEcCCCCEEEEEeC-CceEEEEeCCCce---eeEecCCcccc---------cCCC
Confidence            45778999999998433   899999999999 999996 5899999877421   11233221000         0013


Q ss_pred             CCcceEEEcC----CCCEEEEECC-------CCEEEEEc-CCC------cEEEeCCccCCCCCCCCCCcccccCCCCCee
Q 014345           81 NHPKGLTVDD----RGNIYIADTM-------NMAIRKIS-DSG------VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDV  142 (426)
Q Consensus        81 n~P~GIaVd~----dG~LYVADt~-------N~rIrk~d-~g~------VstIaGg~~g~~~G~~dG~~~~a~f~~P~gI  142 (426)
                      ..|.||++++    +|.|||+++.       .++|.+++ ++.      ..++.....          ........+.+|
T Consensus        66 ~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p----------~~~~~~h~~~~l  135 (353)
T 2g8s_A           66 GGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMP----------KLSTGNHFGGRL  135 (353)
T ss_dssp             CSEEEEEECTTHHHHCEEEEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSS----------CCBSSSCCCCCE
T ss_pred             CCceeEEECCCCCCCCEEEEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECC----------CCCCCcccCccE
Confidence            3579999998    5899999875       45788876 321      222321100          001123457888


Q ss_pred             EEECCCCeEEEEECC-------------CCeEEEEEcCCC--------------ceEeecCCCCcceEEEEe
Q 014345          143 VYIGSSCSLLVIDRG-------------NRAIREIQLHFD--------------DCAYQYGSSFPLGIAVLL  187 (426)
Q Consensus       143 a~vd~~G~LYVaDsg-------------N~rIr~I~l~~~--------------~~~~~~~~g~P~GIAv~~  187 (426)
                      + ++++|.|||+.-.             .++|.+|++++.              ...+..+.-.|.|++++.
T Consensus       136 ~-~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~  206 (353)
T 2g8s_A          136 V-FDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNP  206 (353)
T ss_dssp             E-ECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEET
T ss_pred             E-ECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCCCCCCcCCCCCCccEEEEcCcCccceEEEC
Confidence            8 6899999999632             368999998764              123344555688899885

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.92  E-value=4.5e-08  Score=95.56  Aligned_cols=156  Identities=14%  Similarity=0.066  Sum_probs=98.4

Q ss_pred             CCCceEEEEcCCCcEEEEECC-----CCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcC-CCC
Q 014345           20 GIEPYSVEVLPGGELLILDSA-----NSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD-RGN   93 (426)
Q Consensus        20 ~~~P~GIaVd~dG~LYVaD~~-----n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~-dG~   93 (426)
                      +..|+||++|++|+|||+|.+     .++|++++.++   +++...+..+...     +    .....|++|++|+ +|.
T Consensus        66 ~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~t---g~~~~~~~~~~~~-----~----~~~~~~~~v~vd~~~g~  133 (343)
T 2qe8_A           66 FDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLN---NQLSRVIYLPPPI-----T----LSNSFVNDLAVDLIHNF  133 (343)
T ss_dssp             CSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTT---TEEEEEEECCTTT-----S----CTTCCCCEEEEETTTTE
T ss_pred             eeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCC---CeEEEEEECChhh-----c----ccccccceEEEecCCCE
Confidence            358999999999999999987     58999999874   3422222211000     0    1235689999996 578


Q ss_pred             EEEEEC---CCCEEEEEc--CCCcEEEeCCccCCCC-C---CCCCCc-----cccc----CCCCCeeEEECCCC-eEEEE
Q 014345           94 IYIADT---MNMAIRKIS--DSGVTTIAGGKWGRGG-G---HVDGPS-----EDAK----FSNDFDVVYIGSSC-SLLVI  154 (426)
Q Consensus        94 LYVADt---~N~rIrk~d--~g~VstIaGg~~g~~~-G---~~dG~~-----~~a~----f~~P~gIa~vd~~G-~LYVa  154 (426)
                      +||+|.   .++.|.+++  .+.+..+..+...... .   ..+|..     .+..    ...|++|+ ++++| .||++
T Consensus       134 ~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia-~s~dg~~ly~~  212 (343)
T 2qe8_A          134 VYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIV-LDAENEWLYLS  212 (343)
T ss_dssp             EEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEE-ECTTSCEEEEE
T ss_pred             EEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeE-eccCCCEEEEE
Confidence            999999   889999999  3555444432100000 0   001100     0000    13588999 56677 79999


Q ss_pred             ECCCCeEEEEEcCC---Cc---------eEeecCCCCcceEEEEec
Q 014345          155 DRGNRAIREIQLHF---DD---------CAYQYGSSFPLGIAVLLA  188 (426)
Q Consensus       155 DsgN~rIr~I~l~~---~~---------~~~~~~~g~P~GIAv~~g  188 (426)
                      +...++|.+++...   ..         .......+.|.|||++..
T Consensus       213 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~  258 (343)
T 2qe8_A          213 PMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKD  258 (343)
T ss_dssp             ESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTT
T ss_pred             eCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCC
Confidence            99999999998531   00         111223457999999854

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.89  E-value=4.9e-08  Score=95.25  Aligned_cols=126  Identities=11%  Similarity=0.048  Sum_probs=87.3

Q ss_pred             CCceEEEEcCCCcEEEEECC--C--CeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEE
Q 014345           21 IEPYSVEVLPGGELLILDSA--N--SNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYI   96 (426)
Q Consensus        21 ~~P~GIaVd~dG~LYVaD~~--n--~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYV   96 (426)
                      ..|.+|+++++|.+||+...  .  .+|.+++ +    +.+..+....  .    .   ....|..|.||++|++|+|||
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~-~----g~~~~~p~~~--~----~---~~~~~~~p~gv~~d~~g~L~v   82 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELT-Q----DGLIPFPPQS--G----N---AIITFDTVLGIKSDGNGIVWM   82 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEE-T----TEEEESCCCC--S----S---CCCCCSCEEEEEECSSSEEEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEEC-C----CCeecCCCcc--c----C---cccceeEeeEEEEcCCCcEEE
Confidence            47999999999999999742  2  3899998 5    3333222110  0    0   113488999999999999999


Q ss_pred             EECC-----CCEEEEEc-C-CCc-EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEEC---CCCeEEEEE
Q 014345           97 ADTM-----NMAIRKIS-D-SGV-TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDR---GNRAIREIQ  165 (426)
Q Consensus        97 ADt~-----N~rIrk~d-~-g~V-stIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDs---gN~rIr~I~  165 (426)
                      +|.+     ..+|.++| + +.+ .++......           ......|++|++....+.+||+|.   .++.|.+++
T Consensus        83 ~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~-----------~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d  151 (343)
T 2qe8_A           83 LDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPI-----------TLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVD  151 (343)
T ss_dssp             EECHHHHTSCCEEEEEETTTTEEEEEEECCTTT-----------SCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEE
T ss_pred             EcCCCCcCCCCeEEEEECCCCeEEEEEECChhh-----------cccccccceEEEecCCCEEEEEcCccCCCCeEEEEE
Confidence            9987     58999999 3 553 444321100           012356899994334689999999   889999999


Q ss_pred             cCCCce
Q 014345          166 LHFDDC  171 (426)
Q Consensus       166 l~~~~~  171 (426)
                      +.....
T Consensus       152 ~~~g~~  157 (343)
T 2qe8_A          152 LQTGLA  157 (343)
T ss_dssp             TTTCCE
T ss_pred             CCCCCE
Confidence            875443

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=98.87  E-value=3.8e-08  Score=97.77  Aligned_cols=132  Identities=10%  Similarity=0.061  Sum_probs=81.7

Q ss_pred             CCceEEEEcCC----CcEEEEECCC-----CeEEEEeCCCCcccccEEEec-CCCCcccccCCcccccccCCcceEEEcC
Q 014345           21 IEPYSVEVLPG----GELLILDSAN-----SNLYRISSSLSLYSRPKLVAG-SAEGYSGHVDGKPREARMNHPKGLTVDD   90 (426)
Q Consensus        21 ~~P~GIaVd~d----G~LYVaD~~n-----~rI~kid~dg~~~g~v~~vaG-~~~G~~G~~dG~a~~A~Ln~P~GIaVd~   90 (426)
                      ..|.||+++++    |.|||++..+     ++|.+++.++........++. .+. .         ......|.+|++++
T Consensus        75 ~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~-~---------~~~~h~~~~l~~~p  144 (352)
T 2ism_A           75 SGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPA-R---------PHGLHSGGRIAFGP  144 (352)
T ss_dssp             CSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECC-C---------TTCCCCCCCEEECT
T ss_pred             CCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCC-C---------CCCCcCCceEEECC
Confidence            37999999997    7899999865     799999887432122233322 110 0         01256789999999


Q ss_pred             CCCEEEEECC-------------CCEEEEEc-CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECC-CCeEEEEE
Q 014345           91 RGNIYIADTM-------------NMAIRKIS-DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGS-SCSLLVID  155 (426)
Q Consensus        91 dG~LYVADt~-------------N~rIrk~d-~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~-~G~LYVaD  155 (426)
                      +|.|||++..             .++|.+++ ++.+   ..+....+........-...+..|++|+ +++ +|.|||+|
T Consensus       145 dG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~---p~~npf~~~~~~~~~i~a~G~rnp~g~a-~d~~~g~l~v~d  220 (352)
T 2ism_A          145 DGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEP---APGNPFLGRRGARPEVYSLGHRNPQGLA-WHPKTGELFSSE  220 (352)
T ss_dssp             TSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSB---CTTCTTTTCTTSCTTEEEECCSEECCCE-ECTTTCCEEEEE
T ss_pred             CCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCC---CCCCcccCCCCCCccEEEEcCCCcccEE-EECCCCCEEEEE
Confidence            9999999742             36888888 5432   1110000000000011122367899999 566 89999999


Q ss_pred             CCCCe--------EEEEEc
Q 014345          156 RGNRA--------IREIQL  166 (426)
Q Consensus       156 sgN~r--------Ir~I~l  166 (426)
                      .+.++        |..|..
T Consensus       221 ~g~~~~~~~~~dei~~i~~  239 (352)
T 2ism_A          221 HGPSGEQGYGHDEVNLIVP  239 (352)
T ss_dssp             ECC------CCCEEEEECT
T ss_pred             cCCCCCCCCCCeEEEEecc
Confidence            98877        666654

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=98.85  E-value=1.4e-07  Score=89.71  Aligned_cols=145  Identities=14%  Similarity=0.122  Sum_probs=99.3

Q ss_pred             CcEEEEEecCCCCCCCceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceE
Q 014345            7 GYTVETVFDGSKLGIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGL   86 (426)
Q Consensus         7 G~tv~tv~~g~~l~~~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GI   86 (426)
                      +..+..+..+..   .|.+++++++|+||+++..++.|++++.++   +.+..+....               -..|.+|
T Consensus        34 ~~~~~~~~~~~~---~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~---~~~~~~~~~~---------------~~~~~~i   92 (333)
T 2dg1_A           34 AEPWLEISKKGL---QLEGLNFDRQGQLFLLDVFEGNIFKINPET---KEIKRPFVSH---------------KANPAAI   92 (333)
T ss_dssp             CEEEEEEESSCC---CEEEEEECTTSCEEEEETTTCEEEEECTTT---CCEEEEEECS---------------SSSEEEE
T ss_pred             cceeEEEeccCc---cccCcEECCCCCEEEEECCCCEEEEEeCCC---CcEEEEeeCC---------------CCCcceE
Confidence            334444444333   689999999999999999999999999875   3333332110               1358999


Q ss_pred             EEcCCCCEEEEECCC----CEEEEEc-CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECC---
Q 014345           87 TVDDRGNIYIADTMN----MAIRKIS-DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRG---  157 (426)
Q Consensus        87 aVd~dG~LYVADt~N----~rIrk~d-~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsg---  157 (426)
                      +++++|+|||++..+    +.|.+++ +++ +..+.....              ....|.+|+ ++++|+|||++..   
T Consensus        93 ~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~--------------~~~~~~~i~-~d~~g~l~v~~~~~~~  157 (333)
T 2dg1_A           93 KIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLS--------------TAYCIDDMV-FDSKGGFYFTDFRGYS  157 (333)
T ss_dssp             EECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSS--------------SCCCEEEEE-ECTTSCEEEEECCCBT
T ss_pred             EECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCc--------------cCCcccceE-ECCCCCEEEEeccccc
Confidence            999999999999876    7999999 444 443322100              123688888 6889999999975   


Q ss_pred             ---CCeEEEEEcCCCceEe-ecCCCCcceEEEEe
Q 014345          158 ---NRAIREIQLHFDDCAY-QYGSSFPLGIAVLL  187 (426)
Q Consensus       158 ---N~rIr~I~l~~~~~~~-~~~~g~P~GIAv~~  187 (426)
                         ++.|.+++..+..... ......|.++++..
T Consensus       158 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~  191 (333)
T 2dg1_A          158 TNPLGGVYYVSPDFRTVTPIIQNISVANGIALST  191 (333)
T ss_dssp             TBCCEEEEEECTTSCCEEEEEEEESSEEEEEECT
T ss_pred             cCCCceEEEEeCCCCEEEEeecCCCcccceEECC
Confidence               4789999877544332 22334567776653

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.84  E-value=3.8e-08  Score=92.25  Aligned_cols=132  Identities=14%  Similarity=0.112  Sum_probs=93.2

Q ss_pred             CCceEEEEcCCCcEEEEECCC---------------CeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcce
Q 014345           21 IEPYSVEVLPGGELLILDSAN---------------SNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKG   85 (426)
Q Consensus        21 ~~P~GIaVd~dG~LYVaD~~n---------------~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~G   85 (426)
                      ..|++|+++++|+|||++...               +.|++++.++    .+..+..                .+..|++
T Consensus       117 ~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g----~~~~~~~----------------~~~~~~~  176 (314)
T 1pjx_A          117 QGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG----QMIQVDT----------------AFQFPNG  176 (314)
T ss_dssp             BCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS----CEEEEEE----------------EESSEEE
T ss_pred             cCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCCC----CEEEecc----------------CCCCcce
Confidence            369999999999999999765               6899998863    3333321                1446899


Q ss_pred             EEEc----CCC-CEEEEECCCCEEEEEc-C--CCcE---EEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEE
Q 014345           86 LTVD----DRG-NIYIADTMNMAIRKIS-D--SGVT---TIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVI  154 (426)
Q Consensus        86 IaVd----~dG-~LYVADt~N~rIrk~d-~--g~Vs---tIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVa  154 (426)
                      ++++    ++| .|||+|..+++|.+++ +  +.+.   .+..-.             ...+..|.+|+ ++++|+|||+
T Consensus       177 i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~-------------~~~~~~p~~i~-~d~~G~l~v~  242 (314)
T 1pjx_A          177 IAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIP-------------GTHEGGADGMD-FDEDNNLLVA  242 (314)
T ss_dssp             EEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECC-------------CCSSCEEEEEE-EBTTCCEEEE
T ss_pred             EEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECC-------------CCCCCCCCceE-ECCCCCEEEE
Confidence            9999    998 5999999999999998 3  3322   121100             00124688888 7899999999


Q ss_pred             ECCCCeEEEEEcC-CCceE-eecCCCCcceEEEE
Q 014345          155 DRGNRAIREIQLH-FDDCA-YQYGSSFPLGIAVL  186 (426)
Q Consensus       155 DsgN~rIr~I~l~-~~~~~-~~~~~g~P~GIAv~  186 (426)
                      +..+++|.++++. +.... .......|.+++++
T Consensus       243 ~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~  276 (314)
T 1pjx_A          243 NWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFK  276 (314)
T ss_dssp             EETTTEEEEECTTCBSCSEEEECSSSCEEEEEEC
T ss_pred             EcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEEC
Confidence            9989999999987 33222 22233557777774

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=98.83  E-value=1.1e-07  Score=95.59  Aligned_cols=163  Identities=18%  Similarity=0.181  Sum_probs=107.7

Q ss_pred             CCcEEEEEecCCCCCCCceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcce
Q 014345            6 SGYTVETVFDGSKLGIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKG   85 (426)
Q Consensus         6 ~G~tv~tv~~g~~l~~~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~G   85 (426)
                      +...++++.++..   .|.+|++.+||.|||++...++|++++.++   +....+.+.+.-..         .....|.|
T Consensus        20 ~~~~~~~va~gL~---~P~~ia~~pdG~llVter~~G~I~~v~~~~---g~~~~v~~~~~v~~---------~g~~GllG   84 (347)
T 3das_A           20 SVKVLRTVATGLN---SPWGLAPLPGGDLLVSSRDEATITRVDAKT---GRKTELGEVPGVSP---------SGEGGLLG   84 (347)
T ss_dssp             CEEEEEEEECCCS---SEEEEEECTTSCEEEEETTTCEEEEECTTT---CCEEEEEECTTCCC---------BTTBSEEE
T ss_pred             CCceeEEeecCCC---CceEEEEcCCCcEEEEEecCCEEEEEECCC---CcEeeecccCceee---------cCCCCcee
Confidence            3456777887655   899999999999999998789999998763   33444443321000         11445899


Q ss_pred             EEEcC----CCCEEEEEC--CCCEEEEEc-CC------C---cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCC
Q 014345           86 LTVDD----RGNIYIADT--MNMAIRKIS-DS------G---VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSC  149 (426)
Q Consensus        86 IaVd~----dG~LYVADt--~N~rIrk~d-~g------~---VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G  149 (426)
                      ||+++    +|.|||+.+  ..++|.++. ++      .   ..+|.-....            ...-....|+ ++++|
T Consensus        85 ia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~------------~~~H~g~~l~-fgpDG  151 (347)
T 3das_A           85 IALSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPK------------GVIHNGGRIA-FGPDK  151 (347)
T ss_dssp             EEECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECC------------CSSCCCCCEE-ECTTS
T ss_pred             eEeccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCC------------CCCccCcccc-CCCCC
Confidence            99998    488999864  456888886 33      1   2333221000            0122456788 68999


Q ss_pred             eEEEEE-------------CCCCeEEEEEcCCC--------c-eEeecCCCCcceEEEEecCCceEEEEEEEe
Q 014345          150 SLLVID-------------RGNRAIREIQLHFD--------D-CAYQYGSSFPLGIAVLLAAGFFGYMLALLQ  200 (426)
Q Consensus       150 ~LYVaD-------------sgN~rIr~I~l~~~--------~-~~~~~~~g~P~GIAv~~g~g~~Gy~~a~lq  200 (426)
                      .|||+-             ...+.|.+|++++.        . ..+..+.-.|.|+|++..    |.+|+.-.
T Consensus       152 ~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~~~i~a~G~RNp~Gla~dp~----G~L~~~d~  220 (347)
T 3das_A          152 MLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFPGSPVYSYGHRNVQGLAWDDK----QRLFASEF  220 (347)
T ss_dssp             CEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSSTTCCEEEBCCSBCCEEEECTT----CCEEEEEC
T ss_pred             CEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCCCCCeEEeeCCCCcceEEECCC----CCEEEEec
Confidence            999994             23589999998864        1 244556667999999852    45665443

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.82  E-value=1.7e-07  Score=90.95  Aligned_cols=134  Identities=11%  Similarity=0.113  Sum_probs=96.4

Q ss_pred             CCceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECC
Q 014345           21 IEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTM  100 (426)
Q Consensus        21 ~~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~  100 (426)
                      ..|++|+++++|.|||++...+.|.++|..+   +++...+..+  .        ...++..|.+|++ .++.|||++.+
T Consensus        84 ~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t---~~~~~~i~~g--~--------~~~~~~~p~~i~~-~~~~lyv~~~~  149 (328)
T 3dsm_A           84 TSPRYIHFLSDEKAYVTQIWDYRIFIINPKT---YEITGYIECP--D--------MDMESGSTEQMVQ-YGKYVYVNCWS  149 (328)
T ss_dssp             SSEEEEEEEETTEEEEEEBSCSEEEEEETTT---TEEEEEEECT--T--------CCTTTCBCCCEEE-ETTEEEEEECT
T ss_pred             CCCcEEEEeCCCeEEEEECCCCeEEEEECCC---CeEEEEEEcC--C--------ccccCCCcceEEE-ECCEEEEEcCC
Confidence            4799999988899999997789999999875   2332222111  0        0123567999999 47899999984


Q ss_pred             -CCEEEEEc--CCCc-EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCC----------CeEEEEEc
Q 014345          101 -NMAIRKIS--DSGV-TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGN----------RAIREIQL  166 (426)
Q Consensus       101 -N~rIrk~d--~g~V-stIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN----------~rIr~I~l  166 (426)
                       ++.|.++|  ++.+ .++..+                  ..|.+|+ ++++|.|||++.++          ++|.+|++
T Consensus       150 ~~~~v~viD~~t~~~~~~i~~g------------------~~p~~i~-~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~  210 (328)
T 3dsm_A          150 YQNRILKIDTETDKVVDELTIG------------------IQPTSLV-MDKYNKMWTITDGGYEGSPYGYEAPSLYRIDA  210 (328)
T ss_dssp             TCCEEEEEETTTTEEEEEEECS------------------SCBCCCE-ECTTSEEEEEBCCBCTTCSSCBCCCEEEEEET
T ss_pred             CCCEEEEEECCCCeEEEEEEcC------------------CCccceE-EcCCCCEEEEECCCccCCccccCCceEEEEEC
Confidence             88999999  3443 333221                  2578888 68899999999886          89999999


Q ss_pred             CCCceEee--cC-CCCcceEEEEe
Q 014345          167 HFDDCAYQ--YG-SSFPLGIAVLL  187 (426)
Q Consensus       167 ~~~~~~~~--~~-~g~P~GIAv~~  187 (426)
                      ........  .. ...|.++|+..
T Consensus       211 ~t~~v~~~~~~~~g~~p~~la~~~  234 (328)
T 3dsm_A          211 ETFTVEKQFKFKLGDWPSEVQLNG  234 (328)
T ss_dssp             TTTEEEEEEECCTTCCCEEEEECT
T ss_pred             CCCeEEEEEecCCCCCceeEEEec
Confidence            87655422  11 23689999884

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=98.82  E-value=7.3e-08  Score=91.68  Aligned_cols=136  Identities=9%  Similarity=0.036  Sum_probs=93.2

Q ss_pred             CCceEEEEcCCCcEEEEECC------CCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCC-
Q 014345           21 IEPYSVEVLPGGELLILDSA------NSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-   93 (426)
Q Consensus        21 ~~P~GIaVd~dG~LYVaD~~------n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~-   93 (426)
                      ..|++|+++++|+|||++..      ++.|++++.++   +.+..+..                .+..|++|+++++|+ 
T Consensus       135 ~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~----------------~~~~~~~i~~~~dg~~  195 (333)
T 2dg1_A          135 YCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDF---RTVTPIIQ----------------NISVANGIALSTDEKV  195 (333)
T ss_dssp             CCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTS---CCEEEEEE----------------EESSEEEEEECTTSSE
T ss_pred             CcccceEECCCCCEEEEeccccccCCCceEEEEeCCC---CEEEEeec----------------CCCcccceEECCCCCE
Confidence            46999999999999999875      47899998874   23333321                144589999999997 


Q ss_pred             EEEEECCCCEEEEEc-C--CCc-EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCC
Q 014345           94 IYIADTMNMAIRKIS-D--SGV-TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFD  169 (426)
Q Consensus        94 LYVADt~N~rIrk~d-~--g~V-stIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~  169 (426)
                      |||++..+++|.+++ +  +.. ..+....... .         .....|.+|+ ++++|+|||++..+++|.++++.+.
T Consensus       196 l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~-~---------~~~~~~~~i~-~d~~G~l~v~~~~~~~v~~~d~~g~  264 (333)
T 2dg1_A          196 LWVTETTANRLHRIALEDDGVTIQPFGATIPYY-F---------TGHEGPDSCC-IDSDDNLYVAMYGQGRVLVFNKRGY  264 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEE-C---------CSSSEEEEEE-EBTTCCEEEEEETTTEEEEECTTSC
T ss_pred             EEEEeCCCCeEEEEEecCCCcCcccccceEEEe-c---------CCCCCCCceE-ECCCCCEEEEEcCCCEEEEECCCCC
Confidence            999999889999998 2  332 2221000000 0         0013578888 7899999999998999999998654


Q ss_pred             ceEeec-CCC------CcceEEEE
Q 014345          170 DCAYQY-GSS------FPLGIAVL  186 (426)
Q Consensus       170 ~~~~~~-~~g------~P~GIAv~  186 (426)
                      ...... ...      .|.++++.
T Consensus       265 ~~~~~~~~~~~~g~~~~~~~~~~~  288 (333)
T 2dg1_A          265 PIGQILIPGRDEGHMLRSTHPQFI  288 (333)
T ss_dssp             EEEEEECTTGGGTCSCBCCEEEEC
T ss_pred             EEEEEEcCCCccccccCcceEEEC
Confidence            332221 111      57778775

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=98.82  E-value=4.5e-08  Score=98.79  Aligned_cols=146  Identities=10%  Similarity=0.082  Sum_probs=100.0

Q ss_pred             CCceEEEEcC--CC--cEEEEECC--CCe--EEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCC
Q 014345           21 IEPYSVEVLP--GG--ELLILDSA--NSN--LYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRG   92 (426)
Q Consensus        21 ~~P~GIaVd~--dG--~LYVaD~~--n~r--I~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG   92 (426)
                      ..|+||.+..  +|  .|||++..  +++  |++++.++    ...+.+...       .|    .+|+.|++++++++|
T Consensus       112 f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~----~~~~~~~~~-------~g----~~~~~pND~~v~~~G  176 (355)
T 3sre_A          112 FNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEE----KSLLHLKTI-------RH----KLLPSVNDIVAVGPE  176 (355)
T ss_dssp             CCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTT----TEEEEEEEE-------CC----TTCSSEEEEEEEETT
T ss_pred             eeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCC----CEEEEEecc-------cc----CCCCCCceEEEeCCC
Confidence            4899999955  45  49999986  344  66667663    223333321       11    248999999999999


Q ss_pred             CEEEEEC-----------------CCCEEEEEcCCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCC-eEEEE
Q 014345           93 NIYIADT-----------------MNMAIRKISDSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSC-SLLVI  154 (426)
Q Consensus        93 ~LYVADt-----------------~N~rIrk~d~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G-~LYVa  154 (426)
                      .+||++.                 ..++|.+++.+.++.++.                 .+..|+||++ ++++ .|||+
T Consensus       177 ~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~~~~~~~-----------------~l~~pNGia~-spDg~~lYva  238 (355)
T 3sre_A          177 HFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAE-----------------GFDFANGINI-SPDGKYVYIA  238 (355)
T ss_dssp             EEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTCCEEEEE-----------------EESSEEEEEE-CTTSSEEEEE
T ss_pred             CEEecCCcEeCCcccccchhhccCCccEEEEEECCeEEEeec-----------------CCcccCcceE-CCCCCEEEEE
Confidence            9999975                 235677777655555543                 3567999995 6665 89999


Q ss_pred             ECCCCeEEEEEcCCCc-eE---eecCCCCcceEEEEecCCceEEEEEEEecc
Q 014345          155 DRGNRAIREIQLHFDD-CA---YQYGSSFPLGIAVLLAAGFFGYMLALLQRR  202 (426)
Q Consensus       155 DsgN~rIr~I~l~~~~-~~---~~~~~g~P~GIAv~~g~g~~Gy~~a~lq~~  202 (426)
                      |+..++|++++.+... ..   .....+.|.|++++..   .|.+|....+.
T Consensus       239 dt~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e---~G~lwva~~~~  287 (355)
T 3sre_A          239 ELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPV---TGDLWVGCHPN  287 (355)
T ss_dssp             EGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTT---TCCEEEEEESC
T ss_pred             eCCCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCC---CCcEEEEecCC
Confidence            9999999999986432 11   1233478999999952   24566655544

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=98.77  E-value=1e-07  Score=98.59  Aligned_cols=159  Identities=18%  Similarity=0.244  Sum_probs=105.8

Q ss_pred             eecCCcEEEEEecCCCCCCCceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCC
Q 014345            3 KFESGYTVETVFDGSKLGIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNH   82 (426)
Q Consensus         3 k~~~G~tv~tv~~g~~l~~~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~   82 (426)
                      ...+|+.++.++.+..   .|.+|+++++|.|||++...++|++++...   +....++.-....... .      ....
T Consensus        12 ~~~~gf~~~~~a~~l~---~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~---g~~~~~~~~~~~~~~~-~------g~~G   78 (454)
T 1cru_A           12 AKSENFDKKVILSNLN---KPHALLWGPDNQIWLTERATGKILRVNPES---GSVKTVFQVPEIVNDA-D------GQNG   78 (454)
T ss_dssp             CCCTTSCEEEEECCCS---SEEEEEECTTSCEEEEETTTCEEEEECTTT---CCEEEEEECTTCCCCT-T------SSCS
T ss_pred             CCCCCeEEEEEECCCC---CceEEEEcCCCcEEEEEcCCCEEEEEECCC---CcEeEEecCCcccccc-C------CCCc
Confidence            3567899999997633   899999999999999998778999998752   3445554332111000 0      1234


Q ss_pred             cceEEEcC----CCCEEEEECC------------CCEEEEEc-CC-C--c---EEEeCCccCCCCCCCCCCcccccCCCC
Q 014345           83 PKGLTVDD----RGNIYIADTM------------NMAIRKIS-DS-G--V---TTIAGGKWGRGGGHVDGPSEDAKFSND  139 (426)
Q Consensus        83 P~GIaVd~----dG~LYVADt~------------N~rIrk~d-~g-~--V---stIaGg~~g~~~G~~dG~~~~a~f~~P  139 (426)
                      +.|||+++    +|.|||+++.            ..+|.+++ +. .  +   .++.-....            ...-.+
T Consensus        79 llgia~~Pdf~~~g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~------------~~~H~~  146 (454)
T 1cru_A           79 LLGFAFHPDFKNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPS------------SKDHQS  146 (454)
T ss_dssp             EEEEEECTTTTTSCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECC------------CSSCCE
T ss_pred             eeEEEECCCcCcCCEEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCC------------CCCCCC
Confidence            68999998    7899999964            45788887 22 1  1   233321000            012357


Q ss_pred             CeeEEECCCCeEEEEEC--C------------------------------CCeEEEEEcCCC------------ceEeec
Q 014345          140 FDVVYIGSSCSLLVIDR--G------------------------------NRAIREIQLHFD------------DCAYQY  175 (426)
Q Consensus       140 ~gIa~vd~~G~LYVaDs--g------------------------------N~rIr~I~l~~~------------~~~~~~  175 (426)
                      .+|+ ++++|.|||+--  +                              .++|.+|++++.            ...+..
T Consensus       147 ~~l~-f~pDG~Lyv~~Gd~~~~~~~~~~~~~~~~~~p~~~~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~  225 (454)
T 1cru_A          147 GRLV-IGPDQKIYYTIGDQGRNQLAYLFLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTL  225 (454)
T ss_dssp             EEEE-ECTTSCEEEEECCTTTTSGGGTTSCCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEB
T ss_pred             CeEe-ECCCCeEEEEECCCCCCCccccccccccccccccccccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEE
Confidence            8888 689999999842  1                              368999998764            123445


Q ss_pred             CCCCcceEEEEe
Q 014345          176 GSSFPLGIAVLL  187 (426)
Q Consensus       176 ~~g~P~GIAv~~  187 (426)
                      +.-.|.|+|++.
T Consensus       226 G~RNp~gla~dp  237 (454)
T 1cru_A          226 GHRNPQGLAFTP  237 (454)
T ss_dssp             CCSEEEEEEECT
T ss_pred             CCCCcceEEECC
Confidence            556788888875

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=98.70  E-value=4.3e-07  Score=90.58  Aligned_cols=125  Identities=13%  Similarity=0.099  Sum_probs=80.7

Q ss_pred             CCceEEEEcCC----CcEEEEECC---C----CeEEEEeCCCC--cccccEEEe-cCCCCcccccCCcccccccCCcceE
Q 014345           21 IEPYSVEVLPG----GELLILDSA---N----SNLYRISSSLS--LYSRPKLVA-GSAEGYSGHVDGKPREARMNHPKGL   86 (426)
Q Consensus        21 ~~P~GIaVd~d----G~LYVaD~~---n----~rI~kid~dg~--~~g~v~~va-G~~~G~~G~~dG~a~~A~Ln~P~GI   86 (426)
                      ..|.||+++++    |.|||++..   +    ++|.+++.++.  .....++++ +.+            ......|.+|
T Consensus        73 ~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~------------~~~~h~~~~l  140 (354)
T 3a9g_A           73 AGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIP------------GAYIHNGGRI  140 (354)
T ss_dssp             CSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEE------------CCSSCCCCCE
T ss_pred             CceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCC------------CCCCcCCceE
Confidence            37999999996    889999974   3    79999987743  111223322 111            0125568999


Q ss_pred             EEcCCCCEEEEECC-------------CCEEEEEc-CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECC-CCeE
Q 014345           87 TVDDRGNIYIADTM-------------NMAIRKIS-DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGS-SCSL  151 (426)
Q Consensus        87 aVd~dG~LYVADt~-------------N~rIrk~d-~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~-~G~L  151 (426)
                      +++++|.|||++..             +++|.+++ ++.+   ..+..     +.....-...+..|++|+ +++ +|.|
T Consensus       141 ~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~---p~~np-----f~~~~i~a~G~rnp~Gla-~d~~~g~l  211 (354)
T 3a9g_A          141 RFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRP---PADNP-----FPNSPIWSYGHRNPQGID-WHRASGVM  211 (354)
T ss_dssp             EECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCC---CTTSS-----STTCCEEEECCSCCCEEE-ECTTTCCE
T ss_pred             EECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCC---CCCCC-----CCCCcEEEEccCCcceEE-EeCCCCCE
Confidence            99999999999642             35888888 5542   10000     000011122367899999 576 8999


Q ss_pred             EEEECCCCe---EEEEEc
Q 014345          152 LVIDRGNRA---IREIQL  166 (426)
Q Consensus       152 YVaDsgN~r---Ir~I~l  166 (426)
                      ||+|.+.++   |..|..
T Consensus       212 ~v~d~g~~~~dei~~i~~  229 (354)
T 3a9g_A          212 VATEHGPVGHDEVNIILK  229 (354)
T ss_dssp             EEEECCSSSCCEEEEECT
T ss_pred             EEEecCCCCCcEEEEecC
Confidence            999998765   665553

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.69  E-value=3.8e-07  Score=88.52  Aligned_cols=127  Identities=13%  Similarity=0.085  Sum_probs=89.0

Q ss_pred             CceEEEEcCCCcEEEEECC-CCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECC
Q 014345           22 EPYSVEVLPGGELLILDSA-NSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTM  100 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~-n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~  100 (426)
                      .|.+|++ .++.|||++.+ .+.|.+||....   ++...+..                -..|.+|+++++|++||++.+
T Consensus       132 ~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~---~~~~~i~~----------------g~~p~~i~~~~dG~l~v~~~~  191 (328)
T 3dsm_A          132 STEQMVQ-YGKYVYVNCWSYQNRILKIDTETD---KVVDELTI----------------GIQPTSLVMDKYNKMWTITDG  191 (328)
T ss_dssp             BCCCEEE-ETTEEEEEECTTCCEEEEEETTTT---EEEEEEEC----------------SSCBCCCEECTTSEEEEEBCC
T ss_pred             CcceEEE-ECCEEEEEcCCCCCEEEEEECCCC---eEEEEEEc----------------CCCccceEEcCCCCEEEEECC
Confidence            7999999 57889999984 889999998742   22222111                124899999999999999987


Q ss_pred             C----------CEEEEEcC--CCcE-EEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcC
Q 014345          101 N----------MAIRKISD--SGVT-TIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLH  167 (426)
Q Consensus       101 N----------~rIrk~d~--g~Vs-tIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~  167 (426)
                      +          +.|.++|.  +.+. ++.-. .+               ..|++|++..+.+.|||++.   .|.++++.
T Consensus       192 ~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~-~g---------------~~p~~la~~~d~~~lyv~~~---~v~~~d~~  252 (328)
T 3dsm_A          192 GYEGSPYGYEAPSLYRIDAETFTVEKQFKFK-LG---------------DWPSEVQLNGTRDTLYWINN---DIWRMPVE  252 (328)
T ss_dssp             BCTTCSSCBCCCEEEEEETTTTEEEEEEECC-TT---------------CCCEEEEECTTSCEEEEESS---SEEEEETT
T ss_pred             CccCCccccCCceEEEEECCCCeEEEEEecC-CC---------------CCceeEEEecCCCEEEEEcc---EEEEEECC
Confidence            6          89999993  3343 33210 00               26899995434678999986   89999987


Q ss_pred             CCceEe---ec-CCCCcceEEEEe
Q 014345          168 FDDCAY---QY-GSSFPLGIAVLL  187 (426)
Q Consensus       168 ~~~~~~---~~-~~g~P~GIAv~~  187 (426)
                      ......   .. ....|.||+++.
T Consensus       253 t~~~~~~~~~~~~~~~p~gi~vdp  276 (328)
T 3dsm_A          253 ADRVPVRPFLEFRDTKYYGLTVNP  276 (328)
T ss_dssp             CSSCCSSCSBCCCSSCEEEEEECT
T ss_pred             CCceeeeeeecCCCCceEEEEEcC
Confidence            654321   11 135799999974

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.61  E-value=1.3e-06  Score=84.65  Aligned_cols=130  Identities=13%  Similarity=0.163  Sum_probs=89.1

Q ss_pred             CCceEEEEcCCCcEEEEECC------CCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCC-
Q 014345           21 IEPYSVEVLPGGELLILDSA------NSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-   93 (426)
Q Consensus        21 ~~P~GIaVd~dG~LYVaD~~------n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~-   93 (426)
                      ..|++++++++|+|||++..      .+.|++++ +    +.+..+...                +..|++|+++++|+ 
T Consensus       134 ~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~-~----g~~~~~~~~----------------~~~~~~i~~s~dg~~  192 (326)
T 2ghs_A          134 NRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA-K----GKVTKLFAD----------------ISIPNSICFSPDGTT  192 (326)
T ss_dssp             EEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE-T----TEEEEEEEE----------------ESSEEEEEECTTSCE
T ss_pred             CCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe-C----CcEEEeeCC----------------CcccCCeEEcCCCCE
Confidence            36899999999999999853      46899998 5    334433211                34589999999986 


Q ss_pred             EEEEECCCCEEEEEc-C--CC--c---EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEE
Q 014345           94 IYIADTMNMAIRKIS-D--SG--V---TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQ  165 (426)
Q Consensus        94 LYVADt~N~rIrk~d-~--g~--V---stIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~  165 (426)
                      |||+|+.+++|.+++ +  .+  +   ..+....              .....|.+++ +|.+|+|||++.++++|.+++
T Consensus       193 lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~--------------~~~~~p~gi~-~d~~G~lwva~~~~~~v~~~d  257 (326)
T 2ghs_A          193 GYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDST--------------GIKGGMDGSV-CDAEGHIWNARWGEGAVDRYD  257 (326)
T ss_dssp             EEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECT--------------TSSSEEEEEE-ECTTSCEEEEEETTTEEEEEC
T ss_pred             EEEEECCCCEEEEEEcccccCCcccCceEEEECC--------------CCCCCCCeeE-ECCCCCEEEEEeCCCEEEEEC
Confidence            999999999999998 3  22  1   1121100              0112577888 799999999999889999999


Q ss_pred             cCCCceEe-ecCCCCcceEEEE
Q 014345          166 LHFDDCAY-QYGSSFPLGIAVL  186 (426)
Q Consensus       166 l~~~~~~~-~~~~g~P~GIAv~  186 (426)
                      +.+..... ......|.++++.
T Consensus       258 ~~g~~~~~i~~~~~~~~~~af~  279 (326)
T 2ghs_A          258 TDGNHIARYEVPGKQTTCPAFI  279 (326)
T ss_dssp             TTCCEEEEEECSCSBEEEEEEE
T ss_pred             CCCCEEEEEECCCCCcEEEEEe
Confidence            86543322 2222345566654

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=98.56  E-value=1.5e-06  Score=83.10  Aligned_cols=125  Identities=16%  Similarity=0.164  Sum_probs=84.7

Q ss_pred             CCceEEEEcCCCcEEEEECC--CCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCC-EEEE
Q 014345           21 IEPYSVEVLPGGELLILDSA--NSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIA   97 (426)
Q Consensus        21 ~~P~GIaVd~dG~LYVaD~~--n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~-LYVA   97 (426)
                      ..|.+|++++||.||+++..  ++.|+.++.++   +....+....             .....|.+|+++++|+ ||++
T Consensus        40 ~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~---g~~~~~~~~~-------------~~~~~p~~~a~spdg~~l~~~  103 (347)
T 3hfq_A           40 QNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDG---QTAHKLNTVV-------------APGTPPAYVAVDEARQLVYSA  103 (347)
T ss_dssp             SCCCCEEECTTCEEEEEEEETTEEEEEEEEEET---TEEEEEEEEE-------------EESCCCSEEEEETTTTEEEEE
T ss_pred             CCcceEEEccCCeEEEEEecCCCceEEEEEecC---CcEEEeeeee-------------cCCCCCEEEEECCCCCEEEEE
Confidence            37999999999999999863  57898888764   2332222100             0134599999999997 9999


Q ss_pred             ECCCCEEEEEc---CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcC
Q 014345           98 DTMNMAIRKIS---DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLH  167 (426)
Q Consensus        98 Dt~N~rIrk~d---~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~  167 (426)
                      +..++.|+.++   ++....+..... .  +  .++........|++++ ++++|.||+++.++++|+.+++.
T Consensus       104 ~~~~~~v~v~~~~~~g~~~~~~~~~~-~--~--~~p~~~~~~~~~~~~~-~spdg~l~v~~~~~~~v~~~~~~  170 (347)
T 3hfq_A          104 NYHKGTAEVMKIAADGALTLTDTVQH-S--G--HGPRPEQDGSHIHYTD-LTPDNRLAVIDLGSDKVYVYNVS  170 (347)
T ss_dssp             ETTTTEEEEEEECTTSCEEEEEEEEC-C--C--CCSSTTCSSCCEEEEE-ECTTSCEEEEETTTTEEEEEEEC
T ss_pred             eCCCCEEEEEEeCCCCCeeecceeec-C--C--CCCCccccCCCceEEE-ECCCCcEEEEeCCCCEEEEEEEC
Confidence            98888888887   233333321100 0  0  0111112345678888 68888899999999999999987

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=98.55  E-value=8.6e-08  Score=96.73  Aligned_cols=110  Identities=15%  Similarity=0.101  Sum_probs=79.8

Q ss_pred             CCCCceEEEEcCCCcEEEEEC-----------------CCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccC
Q 014345           19 LGIEPYSVEVLPGGELLILDS-----------------ANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMN   81 (426)
Q Consensus        19 l~~~P~GIaVd~dG~LYVaD~-----------------~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln   81 (426)
                      ..+.|++++++++|.+||++.                 ..++|+++++.     .++.++..                |.
T Consensus       163 ~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~-----~~~~~~~~----------------l~  221 (355)
T 3sre_A          163 LLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN-----DVRVVAEG----------------FD  221 (355)
T ss_dssp             TCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT-----CCEEEEEE----------------ES
T ss_pred             CCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC-----eEEEeecC----------------Cc
Confidence            345899999999999999874                 24689998873     34555432                77


Q ss_pred             CcceEEEcCCC-CEEEEECCCCEEEEEc-C--CCcEE--EeCCccCCCCCCCCCCcccccCCCCCeeEEECC-CCeEEEE
Q 014345           82 HPKGLTVDDRG-NIYIADTMNMAIRKIS-D--SGVTT--IAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGS-SCSLLVI  154 (426)
Q Consensus        82 ~P~GIaVd~dG-~LYVADt~N~rIrk~d-~--g~Vst--IaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~-~G~LYVa  154 (426)
                      .|+|||+++|| .|||||+..++|++++ +  +.+..  +..      .           -..|-+++ +|. +|+|||+
T Consensus       222 ~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~------~-----------~g~PDGi~-vD~e~G~lwva  283 (355)
T 3sre_A          222 FANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS------F-----------DTLVDNIS-VDPVTGDLWVG  283 (355)
T ss_dssp             SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE------C-----------SSEEEEEE-ECTTTCCEEEE
T ss_pred             ccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe------C-----------CCCCceEE-EeCCCCcEEEE
Confidence            89999999998 5999999999999998 3  33321  110      0           12588898 798 5999996


Q ss_pred             E-CCCCeEEEEEcC
Q 014345          155 D-RGNRAIREIQLH  167 (426)
Q Consensus       155 D-sgN~rIr~I~l~  167 (426)
                      . .+..+|.+++++
T Consensus       284 ~~~~g~~v~~~~P~  297 (355)
T 3sre_A          284 CHPNGMRIFFYDAE  297 (355)
T ss_dssp             EESCHHHHHSCCTT
T ss_pred             ecCCceEEEEECCC
Confidence            6 455566655544

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.52  E-value=9.8e-07  Score=88.46  Aligned_cols=131  Identities=20%  Similarity=0.186  Sum_probs=85.7

Q ss_pred             CceEEEE---cCCCcEEE-EEC------------CCCeEEEEeCCCCcccccEEEecCCCCcccccCC--cccccccCCc
Q 014345           22 EPYSVEV---LPGGELLI-LDS------------ANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDG--KPREARMNHP   83 (426)
Q Consensus        22 ~P~GIaV---d~dG~LYV-aD~------------~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG--~a~~A~Ln~P   83 (426)
                      .|.||.+   |++|.||| +|.            +.+.|+++|.+++..++....+.-.    +..++  ......+..+
T Consensus        64 ~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~----~~~~~~~~~~g~~~~~~  139 (334)
T 2p9w_A           64 QMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFE----KVQDEFEKKAGKRPFGV  139 (334)
T ss_dssp             EEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESH----HHHHHHHHHHSSCCEEE
T ss_pred             eeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCc----cccccccccccccccCC
Confidence            5799999   78999998 552            3578999998832223444443311    00000  0000124458


Q ss_pred             ceEEEcCCCCEEEEECCC-CEEEEEc-CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCe
Q 014345           84 KGLTVDDRGNIYIADTMN-MAIRKIS-DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRA  160 (426)
Q Consensus        84 ~GIaVd~dG~LYVADt~N-~rIrk~d-~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~r  160 (426)
                      ++|++|++|++||+|+.. ..|.+++ +|. +....-. ..          .......++||++.++...|+|++. .++
T Consensus       140 nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~-~~----------~~~~~~G~nGIv~~pdg~~Liv~~~-~g~  207 (334)
T 2p9w_A          140 VQSAQDRDGNSYVAFALGMPAIARVSADGKTVSTFAWE-SG----------NGGQRPGYSGITFDPHSNKLIAFGG-PRA  207 (334)
T ss_dssp             EEEEECTTSCEEEEEEESSCEEEEECTTSCCEEEEEEC-CC----------CSSSCCSCSEEEEETTTTEEEEESS-SSS
T ss_pred             ceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEeeeeec-CC----------CcccccCcceEEEeCCCCEEEEEcC-CCe
Confidence            999999999999999999 9999999 665 3333211 00          0113456899996555557888888 999


Q ss_pred             EEEEEcCC
Q 014345          161 IREIQLHF  168 (426)
Q Consensus       161 Ir~I~l~~  168 (426)
                      |.+|++..
T Consensus       208 L~~fD~~~  215 (334)
T 2p9w_A          208 LTAFDVSK  215 (334)
T ss_dssp             EEEEECSS
T ss_pred             EEEEcCCC
Confidence            99999874

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=98.50  E-value=1.9e-06  Score=82.36  Aligned_cols=132  Identities=11%  Similarity=0.025  Sum_probs=94.3

Q ss_pred             CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCC
Q 014345           22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN  101 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N  101 (426)
                      .|.+++++++|+++|++..+++|+.++.+|    +.....+..                ..|.++++.++|+++|++..+
T Consensus       126 ~~~~v~~~~~G~~lv~~~~~~~v~~~d~~G----~~~w~~~~~----------------~~~~~~~~~~~g~~~v~~~~~  185 (276)
T 3no2_A          126 QFRQINKNKKGNYLVPLFATSEVREIAPNG----QLLNSVKLS----------------GTPFSSAFLDNGDCLVACGDA  185 (276)
T ss_dssp             SCSCCEECTTSCEEEEETTTTEEEEECTTS----CEEEEEECS----------------SCCCEEEECTTSCEEEECBTT
T ss_pred             cccCceECCCCCEEEEecCCCEEEEECCCC----CEEEEEECC----------------CCccceeEcCCCCEEEEeCCC
Confidence            577899999999999999999999999984    334433321                247889999999999999999


Q ss_pred             CEEEEEc-C-CCc-EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECC----------CCeEEEEEcCC
Q 014345          102 MAIRKIS-D-SGV-TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRG----------NRAIREIQLHF  168 (426)
Q Consensus       102 ~rIrk~d-~-g~V-stIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsg----------N~rIr~I~l~~  168 (426)
                      ++|..++ + |.+ -.+.....           ....|..|.+++ +.++|+|||++..          +.++.+|+.++
T Consensus       186 ~~v~~~d~~tG~~~w~~~~~~~-----------~~~~l~~~~~~~-~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g  253 (276)
T 3no2_A          186 HCFVQLNLESNRIVRRVNANDI-----------EGVQLFFVAQLF-PLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEG  253 (276)
T ss_dssp             SEEEEECTTTCCEEEEEEGGGS-----------BSCCCSEEEEEE-ECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTS
T ss_pred             CeEEEEeCcCCcEEEEecCCCC-----------CCccccccccce-EcCCCCEEEEeccCccccccccCCceEEEECCCC
Confidence            9999999 4 554 33322100           012477899998 6889999999963          44688887766


Q ss_pred             CceE-e--ecCCCCcceEEE
Q 014345          169 DDCA-Y--QYGSSFPLGIAV  185 (426)
Q Consensus       169 ~~~~-~--~~~~g~P~GIAv  185 (426)
                      ..+= +  ....+.+.+||.
T Consensus       254 ~~~W~~~~~~~~~~~~~~~~  273 (276)
T 3no2_A          254 KVVWQLNDKVKFGMISTICP  273 (276)
T ss_dssp             BEEEEECCTTTSCCCCEEEE
T ss_pred             CEEEEecCcccccceeeeee
Confidence            4331 1  234456666654

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=98.50  E-value=4.6e-06  Score=79.63  Aligned_cols=121  Identities=10%  Similarity=0.134  Sum_probs=81.7

Q ss_pred             CCceEEEEcCCCc-EEEEECCCCeEEEEeCCCCcccccEEE---ecCCCCcccccCCcccccccCCcceEEEcCCCC-EE
Q 014345           21 IEPYSVEVLPGGE-LLILDSANSNLYRISSSLSLYSRPKLV---AGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IY   95 (426)
Q Consensus        21 ~~P~GIaVd~dG~-LYVaD~~n~rI~kid~dg~~~g~v~~v---aG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~-LY   95 (426)
                      ..|.++++++||. ||+++...++|..++.+... +.+..+   ...+.+.          .....|.+|+++++|+ ||
T Consensus       187 ~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~-g~~~~~~~~~~~~~~~----------~~~~~~~~i~~spdG~~l~  255 (347)
T 3hfq_A          187 FGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQT-GAFTQLGIVKTIPADY----------TAHNGAAAIRLSHDGHFLY  255 (347)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEEETTT-TEEEEEEEEESSCTTC----------CSCCEEEEEEECTTSCEEE
T ss_pred             CCCceEEECCCCCEEEEEeCCCCEEEEEEecCCC-CceEEeeeeeecCCCC----------CCCCcceeEEECCCCCEEE
Confidence            4699999999998 99999988988888765211 232222   1111111          1134589999999997 89


Q ss_pred             EEECCCCEEEEEc-C--CCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCC-eEEEEECCCCeEEEEEcC
Q 014345           96 IADTMNMAIRKIS-D--SGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSC-SLLVIDRGNRAIREIQLH  167 (426)
Q Consensus        96 VADt~N~rIrk~d-~--g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G-~LYVaDsgN~rIr~I~l~  167 (426)
                      |++..++.|.+++ +  +....+.....              .-..|.+++ ++++| .||+++.+++.|..++.+
T Consensus       256 v~~~~~~~v~v~~~~~~g~~~~~~~~~~--------------~~~~~~~~~-~spdg~~l~v~~~~~~~v~v~~~d  316 (347)
T 3hfq_A          256 VSNRGYNTLAVFAVTADGHLTLIQQIST--------------EGDFPRDFD-LDPTEAFVVVVNQNTDNATLYARD  316 (347)
T ss_dssp             EEEETTTEEEEEEECGGGCEEEEEEEEC--------------SSSCCCEEE-ECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             EEeCCCCEEEEEEECCCCcEEEeEEEec--------------CCCCcCeEE-ECCCCCEEEEEEcCCCcEEEEEEe
Confidence            9999889999888 3  23333321100              012588998 56777 599999998999888654

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=98.49  E-value=2.5e-06  Score=81.58  Aligned_cols=136  Identities=13%  Similarity=0.145  Sum_probs=93.1

Q ss_pred             CceEEEEcCCCcEEEEECC-CCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECC
Q 014345           22 EPYSVEVLPGGELLILDSA-NSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTM  100 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~-n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~  100 (426)
                      ..+++.+.+||+++|++.. +++|+.++++|..   +..+ +...+.         ...+..|.+++++++|+++|++..
T Consensus        78 ~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~---l~~~-~~~~~~---------~~~~~~~~~v~~~~~G~~lv~~~~  144 (276)
T 3no2_A           78 EMQTARILPDGNALVAWCGHPSTILEVNMKGEV---LSKT-EFETGI---------ERPHAQFRQINKNKKGNYLVPLFA  144 (276)
T ss_dssp             EEEEEEECTTSCEEEEEESTTEEEEEECTTSCE---EEEE-EECCSC---------SSGGGSCSCCEECTTSCEEEEETT
T ss_pred             cccccEECCCCCEEEEecCCCCEEEEEeCCCCE---EEEE-eccCCC---------CcccccccCceECCCCCEEEEecC
Confidence            3567788889999999987 8899999887532   2222 111010         112456889999999999999999


Q ss_pred             CCEEEEEc-CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceEeec-C--
Q 014345          101 NMAIRKIS-DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQY-G--  176 (426)
Q Consensus       101 N~rIrk~d-~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~~~~~-~--  176 (426)
                      +++|..++ +|.+.-..+..                 ..|++++ ...+|+++|++..+++|..+++......... .  
T Consensus       145 ~~~v~~~d~~G~~~w~~~~~-----------------~~~~~~~-~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~  206 (276)
T 3no2_A          145 TSEVREIAPNGQLLNSVKLS-----------------GTPFSSA-FLDNGDCLVACGDAHCFVQLNLESNRIVRRVNAND  206 (276)
T ss_dssp             TTEEEEECTTSCEEEEEECS-----------------SCCCEEE-ECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGG
T ss_pred             CCEEEEECCCCCEEEEEECC-----------------CCcccee-EcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCC
Confidence            99999999 65543222210                 1467777 5788999999999999999999843332211 1  


Q ss_pred             -----CCCcceEEEEec
Q 014345          177 -----SSFPLGIAVLLA  188 (426)
Q Consensus       177 -----~g~P~GIAv~~g  188 (426)
                           ...|.+++++..
T Consensus       207 ~~~~~l~~~~~~~~~~~  223 (276)
T 3no2_A          207 IEGVQLFFVAQLFPLQN  223 (276)
T ss_dssp             SBSCCCSEEEEEEECTT
T ss_pred             CCCccccccccceEcCC
Confidence                 123667777644

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.39  E-value=7e-06  Score=79.47  Aligned_cols=107  Identities=19%  Similarity=0.201  Sum_probs=73.9

Q ss_pred             CceEEEEcCCCc-EEEEECCCCeEEEEeCC--CC-cccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEE
Q 014345           22 EPYSVEVLPGGE-LLILDSANSNLYRISSS--LS-LYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIA   97 (426)
Q Consensus        22 ~P~GIaVd~dG~-LYVaD~~n~rI~kid~d--g~-~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVA   97 (426)
                      .|+++++++||+ ||++|..+++|++++.+  .+ .......+.... .            ....|.|+++|++|+|||+
T Consensus       180 ~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~-~------------~~~~p~gi~~d~~G~lwva  246 (326)
T 2ghs_A          180 IPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDST-G------------IKGGMDGSVCDAEGHIWNA  246 (326)
T ss_dssp             SEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECT-T------------SSSEEEEEEECTTSCEEEE
T ss_pred             ccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECC-C------------CCCCCCeeEECCCCCEEEE
Confidence            689999999996 89999999999999864  22 111222222110 0            0124899999999999999


Q ss_pred             ECCCCEEEEEc-CCCc-EEEeCCccCCCCCCCCCCcccccCCCCCeeEEE-CCCCeEEEEECCC
Q 014345           98 DTMNMAIRKIS-DSGV-TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYI-GSSCSLLVIDRGN  158 (426)
Q Consensus        98 Dt~N~rIrk~d-~g~V-stIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~v-d~~G~LYVaDsgN  158 (426)
                      +..+++|.+++ ++.+ .++...                 ...|.++++. ++.+.|||+....
T Consensus       247 ~~~~~~v~~~d~~g~~~~~i~~~-----------------~~~~~~~af~g~d~~~L~vt~~~~  293 (326)
T 2ghs_A          247 RWGEGAVDRYDTDGNHIARYEVP-----------------GKQTTCPAFIGPDASRLLVTSARE  293 (326)
T ss_dssp             EETTTEEEEECTTCCEEEEEECS-----------------CSBEEEEEEESTTSCEEEEEEBCT
T ss_pred             EeCCCEEEEECCCCCEEEEEECC-----------------CCCcEEEEEecCCCCEEEEEecCC
Confidence            98889999999 5554 333221                 1247788865 3446899988655

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.38  E-value=5e-06  Score=83.35  Aligned_cols=151  Identities=10%  Similarity=-0.019  Sum_probs=95.9

Q ss_pred             CceEEEEcC-CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEE---cCCCCEEE-
Q 014345           22 EPYSVEVLP-GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTV---DDRGNIYI-   96 (426)
Q Consensus        22 ~P~GIaVd~-dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaV---d~dG~LYV-   96 (426)
                      +|.|++.|+ +|.+||++..+++|.+++++++   ....+  ...+...  +|.    ...+|.||.+   |++|.|+| 
T Consensus        14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~---~~~~~--~~~~~s~--~g~----~~~~~sGl~~~~~D~~grL~vv   82 (334)
T 2p9w_A           14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQ---SHFNV--VIDGASS--NGD----GEQQMSGLSLLTHDNSKRLFAV   82 (334)
T ss_dssp             CCSCEEEETTTTEEEEEETTTTEEEEECTTTC---CEEEE--CCTTTCC--SSC----CSEEEEEEEESSSSSCCEEEEE
T ss_pred             CCcCccCcCCCCEEEEEeccCCEEEEEcCCCC---eEEEE--ecCCccc--cCC----CcceeeEEEEeccCCCCcEEEE
Confidence            699999987 7889999999999999999742   22222  1112110  011    1335789999   78899998 


Q ss_pred             EEC------------CCCEEEEEc-C----CCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCC-
Q 014345           97 ADT------------MNMAIRKIS-D----SGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGN-  158 (426)
Q Consensus        97 ADt------------~N~rIrk~d-~----g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN-  158 (426)
                      +|.            +.+.|.++| +    +.....+.-..-. .+..  ......+..+++|+ +|.+|++||+|+.. 
T Consensus        83 ~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~-~~~~--~~~g~~~~~~nDva-vD~~GnaYVt~s~~~  158 (334)
T 2p9w_A           83 MKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQ-DEFE--KKAGKRPFGVVQSA-QDRDGNSYVAFALGM  158 (334)
T ss_dssp             EEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHH-HHHH--HHHSSCCEEEEEEE-ECTTSCEEEEEEESS
T ss_pred             EcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCcccc-cccc--ccccccccCCceeE-ECCCCCEEEeCCCCC
Confidence            662            357899999 6    4443333310000 0000  00000234588998 89999999999999 


Q ss_pred             CeEEEEEcCCCceEe-ecCC------CCcceEEEEe
Q 014345          159 RAIREIQLHFDDCAY-QYGS------SFPLGIAVLL  187 (426)
Q Consensus       159 ~rIr~I~l~~~~~~~-~~~~------g~P~GIAv~~  187 (426)
                      +.|.++++++..... ....      ..+.||+...
T Consensus       159 ~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~p  194 (334)
T 2p9w_A          159 PAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDP  194 (334)
T ss_dssp             CEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEET
T ss_pred             CeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeC
Confidence            999999999864432 1111      1256888773

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=98.34  E-value=2.1e-05  Score=73.98  Aligned_cols=140  Identities=13%  Similarity=0.210  Sum_probs=91.0

Q ss_pred             CCceEEEEcCCCc-EEEEECCCCeEEEEeCCCCcc-cccEEEecCCCCcccccCCcccccccCCcceEEEcCCCC-EEEE
Q 014345           21 IEPYSVEVLPGGE-LLILDSANSNLYRISSSLSLY-SRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIA   97 (426)
Q Consensus        21 ~~P~GIaVd~dG~-LYVaD~~n~rI~kid~dg~~~-g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~-LYVA   97 (426)
                      ..|.+++++++|+ ||+++..++.|..++...... ..+..+..                 -..|.+++++++|+ ||++
T Consensus       176 ~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-----------------~~~~~~~~~spdg~~l~v~  238 (331)
T 3u4y_A          176 TRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT-----------------NNLPGTIVVSRDGSTVYVL  238 (331)
T ss_dssp             SSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC-----------------SSCCCCEEECTTSSEEEEE
T ss_pred             CCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC-----------------CCCCceEEECCCCCEEEEE
Confidence            4699999999997 999999999999999874221 00222211                 13488999999998 9999


Q ss_pred             ECCCCEEEEEc-C-CCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCC-eEEEEECCCCeEEEEEcCCCceEee
Q 014345           98 DTMNMAIRKIS-D-SGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSC-SLLVIDRGNRAIREIQLHFDDCAYQ  174 (426)
Q Consensus        98 Dt~N~rIrk~d-~-g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G-~LYVaDsgN~rIr~I~l~~~~~~~~  174 (426)
                      +...+.|..++ . +.+..+.......   ..+    ........++++ .++| .|||+...++.|.++++......+.
T Consensus       239 ~~~~~~i~~~d~~~~~~~~~~~~~~~~---~~~----~~~~~~~~~~~~-spdg~~l~v~~~~~~~v~v~d~~~~~~~~~  310 (331)
T 3u4y_A          239 TESTVDVFNFNQLSGTLSFVKSFGHGL---LID----PRPLFGANQMAL-NKTETKLFISANISRELKVFTISGKVVGYV  310 (331)
T ss_dssp             CSSEEEEEEEETTTTEEEEEEEEECCC---CCC----CGGGTTCCCEEE-CTTSSEEEEEETTTTEEEEEETTSCEEEEC
T ss_pred             EcCCCEEEEEECCCCceeeeccccccc---ccC----CCCcccccceEE-CCCCCEEEEecCCCCcEEEEEecCCcccce
Confidence            98888999999 3 3343332111000   000    011112256774 5555 6899999999999999987666555


Q ss_pred             cCCCCcceEEE
Q 014345          175 YGSSFPLGIAV  185 (426)
Q Consensus       175 ~~~g~P~GIAv  185 (426)
                      ......-++++
T Consensus       311 ~~~~~~g~~~~  321 (331)
T 3u4y_A          311 AGIEANGGIAI  321 (331)
T ss_dssp             TTCCCBSCEEE
T ss_pred             ecccccCCeEE
Confidence            44433444443

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.32  E-value=3.2e-05  Score=74.99  Aligned_cols=148  Identities=12%  Similarity=-0.031  Sum_probs=94.9

Q ss_pred             cCCcEEEEEecCCCCCCCceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcc
Q 014345            5 ESGYTVETVFDGSKLGIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPK   84 (426)
Q Consensus         5 ~~G~tv~tv~~g~~l~~~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~   84 (426)
                      ..|..+..+.-+..  ..+.|++++ .+.||++...+++|.++|.+...  .+..+. .  + .            ..+.
T Consensus        52 ~tg~v~~~i~l~~~--~fgeGi~~~-g~~lyv~t~~~~~v~viD~~t~~--v~~~i~-~--g-~------------~~g~  110 (266)
T 2iwa_A           52 QTGKVENIHKMDDS--YFGEGLTLL-NEKLYQVVWLKNIGFIYDRRTLS--NIKNFT-H--Q-M------------KDGW  110 (266)
T ss_dssp             TTCCEEEEEECCTT--CCEEEEEEE-TTEEEEEETTCSEEEEEETTTTE--EEEEEE-C--C-S------------SSCC
T ss_pred             CCCCEEEEEecCCC--cceEEEEEe-CCEEEEEEecCCEEEEEECCCCc--EEEEEE-C--C-C------------CCeE
Confidence            34555554443222  246678887 45899999999999999987421  122221 0  1 0            0245


Q ss_pred             eEEEcCCCCEEEEECCCCEEEEEcCC--C-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeE
Q 014345           85 GLTVDDRGNIYIADTMNMAIRKISDS--G-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAI  161 (426)
Q Consensus        85 GIaVd~dG~LYVADt~N~rIrk~d~g--~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rI  161 (426)
                      ||+.| .+.+|++| +.++|.++|..  . +.++.-+..+.            .+..|+++.++  +|.||++....+.|
T Consensus       111 glt~D-g~~l~vs~-gs~~l~viD~~t~~v~~~I~Vg~~~~------------p~~~~nele~~--dg~lyvn~~~~~~V  174 (266)
T 2iwa_A          111 GLATD-GKILYGSD-GTSILYEIDPHTFKLIKKHNVKYNGH------------RVIRLNELEYI--NGEVWANIWQTDCI  174 (266)
T ss_dssp             EEEEC-SSSEEEEC-SSSEEEEECTTTCCEEEEEECEETTE------------ECCCEEEEEEE--TTEEEEEETTSSEE
T ss_pred             EEEEC-CCEEEEEC-CCCeEEEEECCCCcEEEEEEECCCCc------------ccccceeEEEE--CCEEEEecCCCCeE
Confidence            66665 35799999 57899999933  3 34444321111            24568899876  58999999999999


Q ss_pred             EEEEcCCCceEeecC---------------CCCcceEEEEecC
Q 014345          162 REIQLHFDDCAYQYG---------------SSFPLGIAVLLAA  189 (426)
Q Consensus       162 r~I~l~~~~~~~~~~---------------~g~P~GIAv~~g~  189 (426)
                      .+|++....+.-.-.               ...|.|||.+...
T Consensus       175 ~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~  217 (266)
T 2iwa_A          175 ARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQEN  217 (266)
T ss_dssp             EEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTT
T ss_pred             EEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCC
Confidence            999998766532111               1357899998653

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=98.29  E-value=4e-05  Score=72.16  Aligned_cols=141  Identities=13%  Similarity=0.149  Sum_probs=92.8

Q ss_pred             CCceEEEEcCCCc-EEEEECC------CCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCC
Q 014345           21 IEPYSVEVLPGGE-LLILDSA------NSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN   93 (426)
Q Consensus        21 ~~P~GIaVd~dG~-LYVaD~~------n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~   93 (426)
                      ..|++++++++|+ ||+++..      .+.|.+++..+.   +.......                -..|.+++++++|+
T Consensus        41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~---~~~~~~~~----------------~~~~~~~~~s~dg~  101 (353)
T 3vgz_A           41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTL---EVTQAIHN----------------DLKPFGATINNTTQ  101 (353)
T ss_dssp             SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTC---CEEEEEEE----------------SSCCCSEEEETTTT
T ss_pred             cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCC---eEEEEEec----------------CCCcceEEECCCCC
Confidence            3699999999875 8999866      568999998742   22222111                11388999999987


Q ss_pred             -EEEEECCCCEEEEEc--CCCc-EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEEC-CCCeEEEEEcCC
Q 014345           94 -IYIADTMNMAIRKIS--DSGV-TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDR-GNRAIREIQLHF  168 (426)
Q Consensus        94 -LYVADt~N~rIrk~d--~g~V-stIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDs-gN~rIr~I~l~~  168 (426)
                       +||++..++.|..++  .+.+ .++..+....        ........|.++++.++.+.||+++. .+++|.++++..
T Consensus       102 ~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~  173 (353)
T 3vgz_A          102 TLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKR--------TEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGN  173 (353)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEEEESCCCCC--------CSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTT
T ss_pred             EEEEEecCCCEEEEEeCCCCeeEEEEecCCCcc--------ccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCC
Confidence             999999999999999  3443 4443321100        00111234788885444457999995 478899999987


Q ss_pred             CceEeec--CCCCcceEEEEec
Q 014345          169 DDCAYQY--GSSFPLGIAVLLA  188 (426)
Q Consensus       169 ~~~~~~~--~~g~P~GIAv~~g  188 (426)
                      .......  ....|.++++...
T Consensus       174 ~~~~~~~~~~~~~~~~~~~s~d  195 (353)
T 3vgz_A          174 IKLKTAIQNTGKMSTGLALDSE  195 (353)
T ss_dssp             TEEEEEECCCCTTCCCCEEETT
T ss_pred             CceEEEecCCCCccceEEECCC
Confidence            6654332  2234777777643

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=98.26  E-value=4.1e-05  Score=73.53  Aligned_cols=119  Identities=13%  Similarity=0.182  Sum_probs=81.0

Q ss_pred             CCCceEEEEcCCCc-EEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCC-EEEE
Q 014345           20 GIEPYSVEVLPGGE-LLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIA   97 (426)
Q Consensus        20 ~~~P~GIaVd~dG~-LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~-LYVA   97 (426)
                      +..|.++++++||. ||+++..++.|..++.+.   +.+..+.... ...         ..+..|.+|+++++|+ ||++
T Consensus       210 ~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~---g~~~~~~~~~-~~~---------~~~~~~~~i~~spdg~~l~v~  276 (361)
T 3scy_A          210 GSGPRHLIFNSDGKFAYLINEIGGTVIAFRYAD---GMLDEIQTVA-ADT---------VNAQGSGDIHLSPDGKYLYAS  276 (361)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTTCEEEEEEEET---TEEEEEEEEE-SCS---------SCCCCEEEEEECTTSSEEEEE
T ss_pred             CCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecC---CceEEeEEEe-cCC---------CCCCCcccEEECCCCCEEEEE
Confidence            34699999999997 899998889999998763   3332222110 000         1145688999999997 8899


Q ss_pred             ECC-CCEEEEEc-C---CCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCC-eEEEEECCCCeEEEEEcC
Q 014345           98 DTM-NMAIRKIS-D---SGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSC-SLLVIDRGNRAIREIQLH  167 (426)
Q Consensus        98 Dt~-N~rIrk~d-~---g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G-~LYVaDsgN~rIr~I~l~  167 (426)
                      +.. ++.|..++ +   +....+.....+               ..|.+++ ++++| .||+++..++.|..+..+
T Consensus       277 ~~~~~~~i~v~~~~~~~g~~~~~~~~~~g---------------~~~~~~~-~spdg~~l~~~~~~~~~v~v~~~d  336 (361)
T 3scy_A          277 NRLKADGVAIFKVDETNGTLTKVGYQLTG---------------IHPRNFI-ITPNGKYLLVACRDTNVIQIFERD  336 (361)
T ss_dssp             ECSSSCEEEEEEECTTTCCEEEEEEEECS---------------SCCCEEE-ECTTSCEEEEEETTTTEEEEEEEC
T ss_pred             CCCCCCEEEEEEEcCCCCcEEEeeEecCC---------------CCCceEE-ECCCCCEEEEEECCCCCEEEEEEE
Confidence            988 78888876 3   333333211001               2588998 56777 599999888999886544

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=98.24  E-value=1.6e-05  Score=80.00  Aligned_cols=124  Identities=11%  Similarity=0.166  Sum_probs=78.6

Q ss_pred             CceEEEEcC----CCcEEEEEC--CCCeEEEEeCCCC-----cccccEEEe-cCCCCcccccCCcccccccCCcceEEEc
Q 014345           22 EPYSVEVLP----GGELLILDS--ANSNLYRISSSLS-----LYSRPKLVA-GSAEGYSGHVDGKPREARMNHPKGLTVD   89 (426)
Q Consensus        22 ~P~GIaVd~----dG~LYVaD~--~n~rI~kid~dg~-----~~g~v~~va-G~~~G~~G~~dG~a~~A~Ln~P~GIaVd   89 (426)
                      .|.|||++|    +|.|||+.+  ..++|.|+..++.     ......++. +.+.            ........|+++
T Consensus        81 GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~------------~~~H~g~~l~fg  148 (347)
T 3das_A           81 GLLGIALSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPK------------GVIHNGGRIAFG  148 (347)
T ss_dssp             SEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECC------------CSSCCCCCEEEC
T ss_pred             CceeeEeccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCC------------CCCccCccccCC
Confidence            799999998    488999764  4579999977641     222334433 2211            013346789999


Q ss_pred             CCCCEEEEEC-------------CCCEEEEEc-CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEE
Q 014345           90 DRGNIYIADT-------------MNMAIRKIS-DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVID  155 (426)
Q Consensus        90 ~dG~LYVADt-------------~N~rIrk~d-~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD  155 (426)
                      ++|.|||+-.             ..++|.+++ ++.+.  .+..      +.+...-...+.+|++|+ ++++|.||++|
T Consensus       149 pDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip--~~nP------f~~~~i~a~G~RNp~Gla-~dp~G~L~~~d  219 (347)
T 3das_A          149 PDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPA--PGNP------FPGSPVYSYGHRNVQGLA-WDDKQRLFASE  219 (347)
T ss_dssp             TTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBC--TTCS------STTCCEEEBCCSBCCEEE-ECTTCCEEEEE
T ss_pred             CCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCcc--CCCC------CCCCeEEeeCCCCcceEE-ECCCCCEEEEe
Confidence            9999999942             246788888 55421  0000      000111122477899999 57799999999


Q ss_pred             CCCC---eEEEEEc
Q 014345          156 RGNR---AIREIQL  166 (426)
Q Consensus       156 sgN~---rIr~I~l  166 (426)
                      .+..   .|..|..
T Consensus       220 ~g~~~~deln~i~~  233 (347)
T 3das_A          220 FGQDTWDELNAIKP  233 (347)
T ss_dssp             CCSSSCEEEEEECT
T ss_pred             cCCCCCceeeEEcC
Confidence            8763   5666653

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=98.22  E-value=3.8e-05  Score=72.21  Aligned_cols=118  Identities=13%  Similarity=0.205  Sum_probs=81.7

Q ss_pred             CCceEEEEcCCCc-EEEEECCCCe-EEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCC-EEEE
Q 014345           21 IEPYSVEVLPGGE-LLILDSANSN-LYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIA   97 (426)
Q Consensus        21 ~~P~GIaVd~dG~-LYVaD~~n~r-I~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~-LYVA   97 (426)
                      ..|+++++++||+ ||+++...+. |..++.+..  +.+....... -           ..-..|.+++++++|+ |||+
T Consensus       128 ~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~--g~~~~~~~~~-~-----------~~~~~~~~~~~spdg~~l~v~  193 (331)
T 3u4y_A          128 YDAVGIAISPNGNGLILIDRSSANTVRRFKIDAD--GVLFDTGQEF-I-----------SGGTRPFNITFTPDGNFAFVA  193 (331)
T ss_dssp             TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTT--CCEEEEEEEE-E-----------CSSSSEEEEEECTTSSEEEEE
T ss_pred             CCccceEECCCCCEEEEEecCCCceEEEEEECCC--CcEeecCCcc-c-----------cCCCCccceEECCCCCEEEEE
Confidence            3699999999997 9999988777 776665421  2221111000 0           0012489999999997 9999


Q ss_pred             ECCCCEEEEEc--CCCc----EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCe-EEEEECCCCeEEEEEcCCCc
Q 014345           98 DTMNMAIRKIS--DSGV----TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCS-LLVIDRGNRAIREIQLHFDD  170 (426)
Q Consensus        98 Dt~N~rIrk~d--~g~V----stIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~-LYVaDsgN~rIr~I~l~~~~  170 (426)
                      +..++.|++++  ++.+    .++..+                  ..|.+++ ++++|. ||+++.+.+.|.++++....
T Consensus       194 ~~~~~~v~v~d~~~~~~~~~~~~~~~~------------------~~~~~~~-~spdg~~l~v~~~~~~~i~~~d~~~~~  254 (331)
T 3u4y_A          194 NLIGNSIGILETQNPENITLLNAVGTN------------------NLPGTIV-VSRDGSTVYVLTESTVDVFNFNQLSGT  254 (331)
T ss_dssp             ETTTTEEEEEECSSTTSCEEEEEEECS------------------SCCCCEE-ECTTSSEEEEECSSEEEEEEEETTTTE
T ss_pred             eCCCCeEEEEECCCCcccceeeeccCC------------------CCCceEE-ECCCCCEEEEEEcCCCEEEEEECCCCc
Confidence            99999999999  3443    222211                  2578888 567775 99999888999999987655


Q ss_pred             e
Q 014345          171 C  171 (426)
Q Consensus       171 ~  171 (426)
                      .
T Consensus       255 ~  255 (331)
T 3u4y_A          255 L  255 (331)
T ss_dssp             E
T ss_pred             e
Confidence            4

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=98.21  E-value=0.00022  Score=67.06  Aligned_cols=134  Identities=12%  Similarity=0.113  Sum_probs=88.9

Q ss_pred             ceEEEEcCCCc-EEEEEC-CCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCC-EEEEEC
Q 014345           23 PYSVEVLPGGE-LLILDS-ANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIADT   99 (426)
Q Consensus        23 P~GIaVd~dG~-LYVaD~-~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~-LYVADt   99 (426)
                      |.+++++++|+ ||+++. .+++|++++...   ++.......        .       -..|.+++++++|+ ||+++.
T Consensus       143 ~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~---~~~~~~~~~--------~-------~~~~~~~~~s~dg~~l~~~~~  204 (353)
T 3vgz_A          143 PRELVADDATNTVYISGIGKESVIWVVDGGN---IKLKTAIQN--------T-------GKMSTGLALDSEGKRLYTTNA  204 (353)
T ss_dssp             EEEEEEETTTTEEEEEEESSSCEEEEEETTT---TEEEEEECC--------C-------CTTCCCCEEETTTTEEEEECT
T ss_pred             CceEEECCCCCEEEEEecCCCceEEEEcCCC---CceEEEecC--------C-------CCccceEEECCCCCEEEEEcC
Confidence            89999999987 899984 578899999874   222222210        0       12488999999987 788876


Q ss_pred             CCCEEEEEc--CCCc-EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceEeecC
Q 014345          100 MNMAIRKIS--DSGV-TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQYG  176 (426)
Q Consensus       100 ~N~rIrk~d--~g~V-stIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~~~~~~  176 (426)
                       ++.|..++  ++.+ .++..+..+             .-..|.++++..+...||+++..++.|.++++..........
T Consensus       205 -~~~i~~~d~~~~~~~~~~~~~~~~-------------~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~  270 (353)
T 3vgz_A          205 -DGELITIDTADNKILSRKKLLDDG-------------KEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVA  270 (353)
T ss_dssp             -TSEEEEEETTTTEEEEEEECCCSS-------------SCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEE
T ss_pred             -CCeEEEEECCCCeEEEEEEcCCCC-------------CCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEE
Confidence             78999999  3333 233221100             122567788544445699999999999999997766544333


Q ss_pred             CCCcceEEEEec
Q 014345          177 SSFPLGIAVLLA  188 (426)
Q Consensus       177 ~g~P~GIAv~~g  188 (426)
                      .+.|.++++...
T Consensus       271 ~~~~~~~~~s~d  282 (353)
T 3vgz_A          271 APESLAVLFNPA  282 (353)
T ss_dssp             CSSCCCEEEETT
T ss_pred             cCCCceEEECCC
Confidence            445666666533

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.20  E-value=6.6e-05  Score=72.83  Aligned_cols=148  Identities=15%  Similarity=0.070  Sum_probs=94.2

Q ss_pred             ecCCcEEEEEecCCCCCCCceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCc
Q 014345            4 FESGYTVETVFDGSKLGIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHP   83 (426)
Q Consensus         4 ~~~G~tv~tv~~g~~l~~~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P   83 (426)
                      ++.|..+..+.-....  ...||+++ ++.||++...+++++++|.+...  .+..+.-.     +            .+
T Consensus        72 ~~Tgkv~~~~~l~~~~--FgeGit~~-g~~ly~ltw~~~~v~v~D~~t~~--~~~ti~~~-----~------------eG  129 (262)
T 3nol_A           72 IESGKTLQQIELGKRY--FGEGISDW-KDKIVGLTWKNGLGFVWNIRNLR--QVRSFNYD-----G------------EG  129 (262)
T ss_dssp             TTTCCEEEEEECCTTC--CEEEEEEE-TTEEEEEESSSSEEEEEETTTCC--EEEEEECS-----S------------CC
T ss_pred             CCCCcEEEEEecCCcc--ceeEEEEe-CCEEEEEEeeCCEEEEEECccCc--EEEEEECC-----C------------Cc
Confidence            3445555544332221  23667776 35899999999999999997421  22222110     0            24


Q ss_pred             ceEEEcCCCCEEEEECCCCEEEEEcC--CC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCe
Q 014345           84 KGLTVDDRGNIYIADTMNMAIRKISD--SG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRA  160 (426)
Q Consensus        84 ~GIaVd~dG~LYVADt~N~rIrk~d~--g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~r  160 (426)
                      .|++.| .+.||++|. .++|+++|.  .. +.+|.-+..+.            .+..++.+.++  +|.||+..+..+.
T Consensus       130 ~glt~d-g~~L~~SdG-s~~i~~iDp~T~~v~~~I~V~~~g~------------~~~~lNELe~~--~G~lyan~w~~~~  193 (262)
T 3nol_A          130 WGLTHN-DQYLIMSDG-TPVLRFLDPESLTPVRTITVTAHGE------------ELPELNELEWV--DGEIFANVWQTNK  193 (262)
T ss_dssp             CCEEEC-SSCEEECCS-SSEEEEECTTTCSEEEEEECEETTE------------ECCCEEEEEEE--TTEEEEEETTSSE
T ss_pred             eEEecC-CCEEEEECC-CCeEEEEcCCCCeEEEEEEeccCCc------------cccccceeEEE--CCEEEEEEccCCe
Confidence            678876 368999995 789999993  33 34443221111            24456677765  6899999999999


Q ss_pred             EEEEEcCCCceEee-c-------------CCCCcceEEEEecC
Q 014345          161 IREIQLHFDDCAYQ-Y-------------GSSFPLGIAVLLAA  189 (426)
Q Consensus       161 Ir~I~l~~~~~~~~-~-------------~~g~P~GIAv~~g~  189 (426)
                      |.+||+....+.-. .             ....|.|||.+...
T Consensus       194 I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~  236 (262)
T 3nol_A          194 IVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEH  236 (262)
T ss_dssp             EEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTT
T ss_pred             EEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCC
Confidence            99999987666421 1             11357889988653

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=98.19  E-value=1.2e-05  Score=85.89  Aligned_cols=120  Identities=18%  Similarity=0.185  Sum_probs=79.8

Q ss_pred             CCceEEEEcC-CCcEEEEECCC---------------------CeEEEEeCCCCc----cc--ccEEEecCCCCcc----
Q 014345           21 IEPYSVEVLP-GGELLILDSAN---------------------SNLYRISSSLSL----YS--RPKLVAGSAEGYS----   68 (426)
Q Consensus        21 ~~P~GIaVd~-dG~LYVaD~~n---------------------~rI~kid~dg~~----~g--~v~~vaG~~~G~~----   68 (426)
                      ..|.+|++++ +|.|||+-+.|                     +.|+++..+++-    ..  .+.+++|.+....    
T Consensus       384 dRpEdi~v~p~~g~vY~alTnn~~rg~~~~~~~~~Npr~~n~~G~I~r~~e~~~d~~a~~f~W~i~l~~G~p~~~~~~~~  463 (592)
T 4a9v_A          384 DRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAGTPK  463 (592)
T ss_dssp             ECEEEEEECTTTCCEEEEECCBTTTTSTTSCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTTSGG
T ss_pred             cCccceeEcCCCCEEEEEEeCCCCCCCcCccccCCCCccCCCCCeEEEEeeCCCCcccceeeEEEEEEccCCcccccccc
Confidence            3799999998 89999997543                     679999765321    11  2334455542111    


Q ss_pred             cccCCcccccccCCcceEEEcCCCCEEE-EECC-----------CCEEEEEc--CCCcEEEeCCccCCCCCCCCCCcccc
Q 014345           69 GHVDGKPREARMNHPKGLTVDDRGNIYI-ADTM-----------NMAIRKIS--DSGVTTIAGGKWGRGGGHVDGPSEDA  134 (426)
Q Consensus        69 G~~dG~a~~A~Ln~P~GIaVd~dG~LYV-ADt~-----------N~rIrk~d--~g~VstIaGg~~g~~~G~~dG~~~~a  134 (426)
                      +...+......|+.|.+|+||++|+||| +|..           |+.+..++  .+.+..++.+.               
T Consensus       464 ~g~~~~~~~~~fnsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P---------------  528 (592)
T 4a9v_A          464 GGSSNITPQNMFNSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGP---------------  528 (592)
T ss_dssp             GCCTTCCTTTCCCCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECC---------------
T ss_pred             cCccCccccCccCCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCC---------------
Confidence            0001122345799999999999999999 7863           56888888  35576665321               


Q ss_pred             cCCCCCeeEEECCCCeEEEEE
Q 014345          135 KFSNDFDVVYIGSSCSLLVID  155 (426)
Q Consensus       135 ~f~~P~gIa~vd~~G~LYVaD  155 (426)
                      .+..|+||++.++...|||+-
T Consensus       529 ~~aEpnGiafSPD~ktLfV~v  549 (592)
T 4a9v_A          529 IGCEVTGISFSPDQKTLFVGI  549 (592)
T ss_dssp             TTCEEEEEEECTTSSEEEEEE
T ss_pred             CCccccCCEECCCCCEEEEEE
Confidence            134689999765556788875

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.18  E-value=0.0001  Score=70.71  Aligned_cols=131  Identities=18%  Similarity=0.133  Sum_probs=87.3

Q ss_pred             ceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCCC
Q 014345           23 PYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNM  102 (426)
Q Consensus        23 P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N~  102 (426)
                      ..||+++ ++.||+++..+++|+++|.+.-  ..+..+.-.     +            .+.|||.| .+.||++|. .+
T Consensus        67 geGi~~~-~~~ly~ltw~~~~v~v~D~~tl--~~~~ti~~~-----~------------~Gwglt~d-g~~L~vSdg-s~  124 (243)
T 3mbr_X           67 GAGIVAW-RDRLIQLTWRNHEGFVYDLATL--TPRARFRYP-----G------------EGWALTSD-DSHLYMSDG-TA  124 (243)
T ss_dssp             EEEEEEE-TTEEEEEESSSSEEEEEETTTT--EEEEEEECS-----S------------CCCEEEEC-SSCEEEECS-SS
T ss_pred             eeEEEEe-CCEEEEEEeeCCEEEEEECCcC--cEEEEEeCC-----C------------CceEEeeC-CCEEEEECC-CC
Confidence            4677776 4689999999999999999741  122222110     1            35788876 468999995 88


Q ss_pred             EEEEEcCCC---cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceEee---c-
Q 014345          103 AIRKISDSG---VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQ---Y-  175 (426)
Q Consensus       103 rIrk~d~g~---VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~~~~---~-  175 (426)
                      +|.++|..+   +.+|.-+..+.            .+...+.|.++  +|.||+..+..+.|.+||+....+.-.   . 
T Consensus       125 ~l~~iDp~t~~~~~~I~V~~~g~------------~~~~lNeLe~~--~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~  190 (243)
T 3mbr_X          125 VIRKLDPDTLQQVGSIKVTAGGR------------PLDNLNELEWV--NGELLANVWLTSRIARIDPASGKVVAWIDLQA  190 (243)
T ss_dssp             EEEEECTTTCCEEEEEECEETTE------------ECCCEEEEEEE--TTEEEEEETTTTEEEEECTTTCBEEEEEECGG
T ss_pred             eEEEEeCCCCeEEEEEEEccCCc------------ccccceeeEEe--CCEEEEEECCCCeEEEEECCCCCEEEEEECCc
Confidence            999999433   34443221111            23455677764  689999999999999999988666321   1 


Q ss_pred             -----------CCCCcceEEEEecC
Q 014345          176 -----------GSSFPLGIAVLLAA  189 (426)
Q Consensus       176 -----------~~g~P~GIAv~~g~  189 (426)
                                 ....|.|||.+...
T Consensus       191 l~~~~~~~~~~~~~vlNGIA~d~~~  215 (243)
T 3mbr_X          191 LVPDADALTDSTNDVLNGIAFDAEH  215 (243)
T ss_dssp             GSTTTTSCCCTTSSCEEEEEEETTT
T ss_pred             CccccccccCCcCCceEEEEEcCCC
Confidence                       12357888888653

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=98.18  E-value=5.7e-06  Score=82.18  Aligned_cols=121  Identities=13%  Similarity=0.071  Sum_probs=75.7

Q ss_pred             CceEEEEcC----CCcEEEEECC-------CCeEEEEeCCCC--cccccEEEe-cCCCCcccccCCcccccccCCcceEE
Q 014345           22 EPYSVEVLP----GGELLILDSA-------NSNLYRISSSLS--LYSRPKLVA-GSAEGYSGHVDGKPREARMNHPKGLT   87 (426)
Q Consensus        22 ~P~GIaVd~----dG~LYVaD~~-------n~rI~kid~dg~--~~g~v~~va-G~~~G~~G~~dG~a~~A~Ln~P~GIa   87 (426)
                      .|.||++++    +|.|||++..       .++|.+++.+..  ......++. +.+..          ......|.+|+
T Consensus        67 g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~----------~~~~h~~~~l~  136 (353)
T 2g8s_A           67 GLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKL----------STGNHFGGRLV  136 (353)
T ss_dssp             SEEEEEECTTHHHHCEEEEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCC----------BSSSCCCCCEE
T ss_pred             CceeEEECCCCCCCCEEEEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCC----------CCCcccCccEE
Confidence            689999998    5889999865       468999876532  112233332 22110          01245688999


Q ss_pred             EcCCCCEEEEECC-------------CCEEEEEc-CCCcEEEeCCccCCCCCCCCC---CcccccCCCCCeeEEECC-CC
Q 014345           88 VDDRGNIYIADTM-------------NMAIRKIS-DSGVTTIAGGKWGRGGGHVDG---PSEDAKFSNDFDVVYIGS-SC  149 (426)
Q Consensus        88 Vd~dG~LYVADt~-------------N~rIrk~d-~g~VstIaGg~~g~~~G~~dG---~~~~a~f~~P~gIa~vd~-~G  149 (426)
                      ++++|.|||+...             .++|.+++ ++.+.  .+..    +-...+   ..-...+..|++|++ ++ +|
T Consensus       137 ~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p--~~np----f~~~~~~~~~i~a~G~rnp~gl~~-d~~~g  209 (353)
T 2g8s_A          137 FDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP--DDNP----FIKESGVRAEIWSYGIRNPQGMAM-NPWSN  209 (353)
T ss_dssp             ECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC--TTCT----TTTSTTSCTTEEEECCSEEEEEEE-ETTTT
T ss_pred             ECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC--CCCC----CcCCCCCCccEEEEcCcCccceEE-ECCCC
Confidence            9999999999633             35899998 55421  1110    000011   111234778999995 55 89


Q ss_pred             eEEEEECCCC
Q 014345          150 SLLVIDRGNR  159 (426)
Q Consensus       150 ~LYVaDsgN~  159 (426)
                      .||++|.+.+
T Consensus       210 ~l~~~d~g~~  219 (353)
T 2g8s_A          210 ALWLNEHGPR  219 (353)
T ss_dssp             EEEEEEECSB
T ss_pred             CEEEEecCCC
Confidence            9999998754

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=98.17  E-value=8.6e-05  Score=71.25  Aligned_cols=139  Identities=14%  Similarity=0.161  Sum_probs=89.1

Q ss_pred             CceEEEEcCCCc-EEEEECCCCeEEEEeCCCCccc----c-cEEE-----ecCCCCcccccCCcccccccCCcceEEEcC
Q 014345           22 EPYSVEVLPGGE-LLILDSANSNLYRISSSLSLYS----R-PKLV-----AGSAEGYSGHVDGKPREARMNHPKGLTVDD   90 (426)
Q Consensus        22 ~P~GIaVd~dG~-LYVaD~~n~rI~kid~dg~~~g----~-v~~v-----aG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~   90 (426)
                      .|+++++++||. ||+++...++|..++.+... +    + +...     .-.              ..-..|.++++++
T Consensus       156 ~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~-~~~~~~~l~~~~~~~~~~~--------------~~~~~~~~~~~sp  220 (361)
T 3scy_A          156 HLHCVRITPDGKYLLADDLGTDQIHKFNINPNA-NADNKEKFLTKGTPEAFKV--------------APGSGPRHLIFNS  220 (361)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTC-CTTTCCCCEEEEEEEEEEC--------------CTTCCEEEEEECT
T ss_pred             cceEEEECCCCCEEEEEeCCCCEEEEEEEcCCC-Ccccccceeecccccceec--------------CCCCCCeEEEEcC
Confidence            458899999997 99999988988888655321 1    1 1111     000              0123588999999


Q ss_pred             CCC-EEEEECCCCEEEEEc--CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCC-eEEEEECC-CCeEEEEE
Q 014345           91 RGN-IYIADTMNMAIRKIS--DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSC-SLLVIDRG-NRAIREIQ  165 (426)
Q Consensus        91 dG~-LYVADt~N~rIrk~d--~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G-~LYVaDsg-N~rIr~I~  165 (426)
                      +|+ |||++..++.|.+++  ++.+..+.....           ....+..|.+|+ ++++| .||+++.+ +++|..++
T Consensus       221 dg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~-----------~~~~~~~~~~i~-~spdg~~l~v~~~~~~~~i~v~~  288 (361)
T 3scy_A          221 DGKFAYLINEIGGTVIAFRYADGMLDEIQTVAA-----------DTVNAQGSGDIH-LSPDGKYLYASNRLKADGVAIFK  288 (361)
T ss_dssp             TSSEEEEEETTTCEEEEEEEETTEEEEEEEEES-----------CSSCCCCEEEEE-ECTTSSEEEEEECSSSCEEEEEE
T ss_pred             CCCEEEEEcCCCCeEEEEEecCCceEEeEEEec-----------CCCCCCCcccEE-ECCCCCEEEEECCCCCCEEEEEE
Confidence            997 999998889999998  444433321100           011244678998 56677 58999998 88999988


Q ss_pred             cCC--CceE---eecCCCCcceEEEEe
Q 014345          166 LHF--DDCA---YQYGSSFPLGIAVLL  187 (426)
Q Consensus       166 l~~--~~~~---~~~~~g~P~GIAv~~  187 (426)
                      ++.  ....   .......|.++++..
T Consensus       289 ~~~~~g~~~~~~~~~~g~~~~~~~~sp  315 (361)
T 3scy_A          289 VDETNGTLTKVGYQLTGIHPRNFIITP  315 (361)
T ss_dssp             ECTTTCCEEEEEEEECSSCCCEEEECT
T ss_pred             EcCCCCcEEEeeEecCCCCCceEEECC
Confidence            752  2211   122234577777763

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.16  E-value=4.4e-05  Score=74.33  Aligned_cols=131  Identities=14%  Similarity=0.014  Sum_probs=88.2

Q ss_pred             ceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCCC
Q 014345           23 PYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNM  102 (426)
Q Consensus        23 P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N~  102 (426)
                      ..||+++. +.||++...+++|+++|.+..  ..+..+.-.                 ..+.|||.|. +.||++| +.+
T Consensus        98 geGit~~g-~~Ly~ltw~~~~v~V~D~~Tl--~~~~ti~~~-----------------~eGwGLt~Dg-~~L~vSd-Gs~  155 (268)
T 3nok_A           98 AEGLASDG-ERLYQLTWTEGLLFTWSGMPP--QRERTTRYS-----------------GEGWGLCYWN-GKLVRSD-GGT  155 (268)
T ss_dssp             EEEEEECS-SCEEEEESSSCEEEEEETTTT--EEEEEEECS-----------------SCCCCEEEET-TEEEEEC-SSS
T ss_pred             eeEEEEeC-CEEEEEEccCCEEEEEECCcC--cEEEEEeCC-----------------CceeEEecCC-CEEEEEC-CCC
Confidence            46688864 589999999999999998741  112222110                 1257888773 5899999 489


Q ss_pred             EEEEEcCC--C-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceEee---c-
Q 014345          103 AIRKISDS--G-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQ---Y-  175 (426)
Q Consensus       103 rIrk~d~g--~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~~~~---~-  175 (426)
                      +|+++|..  . +.+|.-+..+.            .+..++.|.++  +|.||+..+..+.|.+||+....+.-.   . 
T Consensus       156 ~l~~iDp~T~~v~~~I~V~~~g~------------~v~~lNeLe~~--dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~  221 (268)
T 3nok_A          156 MLTFHEPDGFALVGAVQVKLRGQ------------PVELINELECA--NGVIYANIWHSSDVLEIDPATGTVVGVIDASA  221 (268)
T ss_dssp             EEEEECTTTCCEEEEEECEETTE------------ECCCEEEEEEE--TTEEEEEETTCSEEEEECTTTCBEEEEEECHH
T ss_pred             EEEEEcCCCCeEEEEEEeCCCCc------------ccccccccEEe--CCEEEEEECCCCeEEEEeCCCCcEEEEEECCC
Confidence            99999933  3 33443221111            24456778865  689999999999999999987666321   1 


Q ss_pred             -----------CCCCcceEEEEecC
Q 014345          176 -----------GSSFPLGIAVLLAA  189 (426)
Q Consensus       176 -----------~~g~P~GIAv~~g~  189 (426)
                                 ....+.|||.+...
T Consensus       222 L~~~~~~~~~~~~~vlNGIA~dp~~  246 (268)
T 3nok_A          222 LTRAVAGQVTNPEAVLNGIAVEPGS  246 (268)
T ss_dssp             HHHHHTTTCCCTTCCEEEEEECTTT
T ss_pred             CcccccccccCcCCceEEEEEcCCC
Confidence                       11367899988653

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=98.09  E-value=0.00049  Score=64.06  Aligned_cols=140  Identities=11%  Similarity=0.051  Sum_probs=88.5

Q ss_pred             CCceEEEEcCCCc-EEEEECCCCeEEEEeCCCCcccccE---EEecCCCCcccccCCcccccccCCcceEEEcCCCC-EE
Q 014345           21 IEPYSVEVLPGGE-LLILDSANSNLYRISSSLSLYSRPK---LVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IY   95 (426)
Q Consensus        21 ~~P~GIaVd~dG~-LYVaD~~n~rI~kid~dg~~~g~v~---~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~-LY   95 (426)
                      ..|.+++++++|. ||+++...++|..++.+... +.+.   .+.....+.          .....|.+|+++++|+ ||
T Consensus       178 ~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~~~~~----------~~~~~~~~i~~s~dg~~l~  246 (343)
T 1ri6_A          178 AGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPH-GNIECVQTLDMMPENF----------SDTRWAADIHITPDGRHLY  246 (343)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEESSCTT-SCCEEEEEEECSCTTC----------CSCCCEEEEEECTTSSEEE
T ss_pred             CCcceEEECCCCCEEEEEeCCCCEEEEEEecCCC-CcEEEEeeccccCccc----------cccCCccceEECCCCCEEE
Confidence            4799999999997 88999888999999885311 2222   221111111          1134678999999985 88


Q ss_pred             EEECCCCEEEEEc-C--CC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCC-eEEEEECCCCeEEEEEcC--C
Q 014345           96 IADTMNMAIRKIS-D--SG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSC-SLLVIDRGNRAIREIQLH--F  168 (426)
Q Consensus        96 VADt~N~rIrk~d-~--g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G-~LYVaDsgN~rIr~I~l~--~  168 (426)
                      +++..++.|.+++ +  ++ ...+.....               -..|.+++ ++++| .||+++..++.|..++.+  .
T Consensus       247 v~~~~~~~i~v~d~~~~~~~~~~~~~~~~---------------~~~~~~~~-~s~dg~~l~~~~~~~~~v~v~~~d~~~  310 (343)
T 1ri6_A          247 ACDRTASLITVFSVSEDGSVLSKEGFQPT---------------ETQPRGFN-VDHSGKYLIAAGQKSHHISVYEIVGEQ  310 (343)
T ss_dssp             EEETTTTEEEEEEECTTSCCEEEEEEEEC---------------SSSCCCEE-ECTTSSEEEEECTTTCEEEEEEEETTT
T ss_pred             EEecCCCEEEEEEEcCCCCceEEeeeecC---------------CCccceEE-ECCCCCEEEEecCCCCeEEEEEEcCCC
Confidence            8998889999988 4  33 332221100               01277888 46666 589999888888888554  3


Q ss_pred             CceEe---ecCCCCcceEEEEe
Q 014345          169 DDCAY---QYGSSFPLGIAVLL  187 (426)
Q Consensus       169 ~~~~~---~~~~g~P~GIAv~~  187 (426)
                      .....   ......|.+|++..
T Consensus       311 g~~~~~~~~~~g~~p~~i~~~~  332 (343)
T 1ri6_A          311 GLLHEKGRYAVGQGPMWVVVNA  332 (343)
T ss_dssp             TEEEEEEEEECSSSCCEEEEEE
T ss_pred             ceeeEccccccCCCCeeEEEEc
Confidence            22211   22224577777764

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=98.01  E-value=4e-05  Score=79.18  Aligned_cols=120  Identities=13%  Similarity=0.146  Sum_probs=73.2

Q ss_pred             CceEEEEcC----CCcEEEEECC------------CCeEEEEeCCCC--cccccEEEe-cCCCCcccccCCcccccccCC
Q 014345           22 EPYSVEVLP----GGELLILDSA------------NSNLYRISSSLS--LYSRPKLVA-GSAEGYSGHVDGKPREARMNH   82 (426)
Q Consensus        22 ~P~GIaVd~----dG~LYVaD~~------------n~rI~kid~dg~--~~g~v~~va-G~~~G~~G~~dG~a~~A~Ln~   82 (426)
                      .+.|||+++    +|.|||+++.            .++|.|++.+..  .....++++ +.+.            .....
T Consensus        78 Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~------------~~~H~  145 (454)
T 1cru_A           78 GLLGFAFHPDFKNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPS------------SKDHQ  145 (454)
T ss_dssp             SEEEEEECTTTTTSCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECC------------CSSCC
T ss_pred             ceeEEEECCCcCcCCEEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCC------------CCCCC
Confidence            577999999    6889999964            468999976431  112223333 2210            11446


Q ss_pred             cceEEEcCCCCEEEEECC--------------------------------CCEEEEEc-CCCcEEEeCCccCCCCCCCCC
Q 014345           83 PKGLTVDDRGNIYIADTM--------------------------------NMAIRKIS-DSGVTTIAGGKWGRGGGHVDG  129 (426)
Q Consensus        83 P~GIaVd~dG~LYVADt~--------------------------------N~rIrk~d-~g~VstIaGg~~g~~~G~~dG  129 (426)
                      +.+|+++++|.|||+-..                                .++|.+++ +|.+-  .+.. .. .+ ...
T Consensus       146 ~~~l~f~pDG~Lyv~~Gd~~~~~~~~~~~~~~~~~~p~~~~~~aq~~~~~~G~IlRi~~dG~ip--~~Np-f~-~~-~~~  220 (454)
T 1cru_A          146 SGRLVIGPDQKIYYTIGDQGRNQLAYLFLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIP--KDNP-SF-NG-VVS  220 (454)
T ss_dssp             EEEEEECTTSCEEEEECCTTTTSGGGTTSCCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCC--TTCC-EE-TT-EEC
T ss_pred             CCeEeECCCCeEEEEECCCCCCCccccccccccccccccccccccCCCCCCeeEEEEeCCCCCC--CCCC-CC-CC-Ccc
Confidence            899999999999999432                                25677777 54420  0000 00 00 000


Q ss_pred             CcccccCCCCCeeEEECCCCeEEEEECCCC
Q 014345          130 PSEDAKFSNDFDVVYIGSSCSLLVIDRGNR  159 (426)
Q Consensus       130 ~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~  159 (426)
                      ..-...+.+|++|+ ++++|.||++|.+.+
T Consensus       221 ei~a~G~RNp~gla-~dp~G~L~~~d~g~~  249 (454)
T 1cru_A          221 HIYTLGHRNPQGLA-FTPNGKLLQSEQGPN  249 (454)
T ss_dssp             SEEEBCCSEEEEEE-ECTTSCEEEEEECSS
T ss_pred             eEEEECCCCcceEE-ECCCCCEEEEecCCC
Confidence            01122467899999 577899999998654

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=97.95  E-value=0.00025  Score=68.72  Aligned_cols=112  Identities=11%  Similarity=0.061  Sum_probs=78.2

Q ss_pred             CceEEEEcCCCcEEEEEC--CCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEEC
Q 014345           22 EPYSVEVLPGGELLILDS--ANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADT   99 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~--~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt   99 (426)
                      .|+||++++||.||++..  +.+.|.++|....   ++....--+.              -..+.|++++ .+.||+++.
T Consensus        22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg---~v~~~i~l~~--------------~~fgeGi~~~-g~~lyv~t~   83 (266)
T 2iwa_A           22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTG---KVENIHKMDD--------------SYFGEGLTLL-NEKLYQVVW   83 (266)
T ss_dssp             CEEEEEECSTTEEEEEECSTTTCEEEEEETTTC---CEEEEEECCT--------------TCCEEEEEEE-TTEEEEEET
T ss_pred             CcccEEEeCCCeEEEECCCCCCCEEEEEECCCC---CEEEEEecCC--------------CcceEEEEEe-CCEEEEEEe
Confidence            589999999899999974  5789999999853   3322211100              1235688998 458999999


Q ss_pred             CCCEEEEEcCCC---cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCce
Q 014345          100 MNMAIRKISDSG---VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDC  171 (426)
Q Consensus       100 ~N~rIrk~d~g~---VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~  171 (426)
                      .+++|.++|...   +.++.-+ .+                .+++|+.  +.+.|||+| +.++|.+|++.....
T Consensus        84 ~~~~v~viD~~t~~v~~~i~~g-~~----------------~g~glt~--Dg~~l~vs~-gs~~l~viD~~t~~v  138 (266)
T 2iwa_A           84 LKNIGFIYDRRTLSNIKNFTHQ-MK----------------DGWGLAT--DGKILYGSD-GTSILYEIDPHTFKL  138 (266)
T ss_dssp             TCSEEEEEETTTTEEEEEEECC-SS----------------SCCEEEE--CSSSEEEEC-SSSEEEEECTTTCCE
T ss_pred             cCCEEEEEECCCCcEEEEEECC-CC----------------CeEEEEE--CCCEEEEEC-CCCeEEEEECCCCcE
Confidence            999999999333   3444321 10                2456662  457899999 689999999887443

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=97.92  E-value=0.00064  Score=63.23  Aligned_cols=141  Identities=12%  Similarity=0.084  Sum_probs=88.0

Q ss_pred             CceEEEEcCCCc-EEEEECCCCeEEEEeCCCCcccccEEEec-CCCCcccccCCcccccccCCcceEEEcCCCC-EEEEE
Q 014345           22 EPYSVEVLPGGE-LLILDSANSNLYRISSSLSLYSRPKLVAG-SAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIAD   98 (426)
Q Consensus        22 ~P~GIaVd~dG~-LYVaD~~n~rI~kid~dg~~~g~v~~vaG-~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~-LYVAD   98 (426)
                      .|.+++++++|+ ||+++...++|..++.+..  +.+..+.. .....    .       -..|.+++++++|+ ||+++
T Consensus       130 ~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~--~~~~~~~~~~~~~~----~-------~~~~~~~~~~pdg~~l~~~~  196 (343)
T 1ri6_A          130 GCHSANISPDNRTLWVPALKQDRICLFTVSDD--GHLVAQDPAEVTTV----E-------GAGPRHMVFHPNEQYAYCVN  196 (343)
T ss_dssp             TBCCCEECTTSSEEEEEEGGGTEEEEEEECTT--SCEEEEEEEEEECS----T-------TCCEEEEEECTTSSEEEEEE
T ss_pred             CceEEEECCCCCEEEEecCCCCEEEEEEecCC--CceeeecccccccC----C-------CCCcceEEECCCCCEEEEEe
Confidence            699999999986 8999878889999887631  22222110 00000    0       12488999999997 89999


Q ss_pred             CCCCEEEEEc-C---CCcEE---EeCCccCCCCCCCCCCcccccCCCCCeeEEECCCC-eEEEEECCCCeEEEEEcCC--
Q 014345           99 TMNMAIRKIS-D---SGVTT---IAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSC-SLLVIDRGNRAIREIQLHF--  168 (426)
Q Consensus        99 t~N~rIrk~d-~---g~Vst---IaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G-~LYVaDsgN~rIr~I~l~~--  168 (426)
                      ..++.|..++ +   +.+..   +.....+           ......|.+++ ++++| .||+++..++.|..+++..  
T Consensus       197 ~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~-----------~~~~~~~~~i~-~s~dg~~l~v~~~~~~~i~v~d~~~~~  264 (343)
T 1ri6_A          197 ELNSSVDVWELKDPHGNIECVQTLDMMPEN-----------FSDTRWAADIH-ITPDGRHLYACDRTASLITVFSVSEDG  264 (343)
T ss_dssp             TTTTEEEEEESSCTTSCCEEEEEEECSCTT-----------CCSCCCEEEEE-ECTTSSEEEEEETTTTEEEEEEECTTS
T ss_pred             CCCCEEEEEEecCCCCcEEEEeeccccCcc-----------ccccCCccceE-ECCCCCEEEEEecCCCEEEEEEEcCCC
Confidence            8889999998 2   22321   2111000           01133567888 46666 7899999899999999872  


Q ss_pred             CceE---eecCCCCcceEEEEe
Q 014345          169 DDCA---YQYGSSFPLGIAVLL  187 (426)
Q Consensus       169 ~~~~---~~~~~g~P~GIAv~~  187 (426)
                      ....   .....+.|.++++..
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~s~  286 (343)
T 1ri6_A          265 SVLSKEGFQPTETQPRGFNVDH  286 (343)
T ss_dssp             CCEEEEEEEECSSSCCCEEECT
T ss_pred             CceEEeeeecCCCccceEEECC
Confidence            2221   122223377777653

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.89  E-value=0.00072  Score=65.01  Aligned_cols=154  Identities=18%  Similarity=0.192  Sum_probs=95.7

Q ss_pred             CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEE--EecCCCCcccccCCcccccccCCcceEEEcCCC-CEEEEE
Q 014345           22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKL--VAGSAEGYSGHVDGKPREARMNHPKGLTVDDRG-NIYIAD   98 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~--vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG-~LYVAD   98 (426)
                      .+.||+++++|.++|++-.+++|+++..+..  +.+..  ....+.+..   .      .=....|||+|+++ .||++.
T Consensus        71 D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~--~~i~~~~~~~~~~~~~---~------~N~g~EGLA~d~~~~~L~va~  139 (255)
T 3qqz_A           71 DLETIEYIGDNQFVISDERDYAIYVISLTPN--SEVKILKKIKIPLQES---P------TNCGFEGLAYSRQDHTFWFFK  139 (255)
T ss_dssp             SEEEEEECSTTEEEEEETTTTEEEEEEECTT--CCEEEEEEEECCCSSC---C------CSSCCEEEEEETTTTEEEEEE
T ss_pred             ChHHeEEeCCCEEEEEECCCCcEEEEEcCCC--Ceeeeeeeeccccccc---c------ccCCcceEEEeCCCCEEEEEE
Confidence            7999999999999999988999998865432  22121  111110000   0      00124899999976 688876


Q ss_pred             CCC-CEEEEEc---CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceEee
Q 014345           99 TMN-MAIRKIS---DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQ  174 (426)
Q Consensus        99 t~N-~rIrk~d---~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~~~~  174 (426)
                      -.. ..|..++   .+...++.....         ......+..+.+|++.+..+.|||....+++|.+++..+......
T Consensus       140 E~~p~~i~~~~g~~~~~~l~i~~~~~---------~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~~~  210 (255)
T 3qqz_A          140 EKNPIEVYKVNGLLSSNELHISKDKA---------LQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIGEM  210 (255)
T ss_dssp             ESSSEEEEEEESTTCSSCCEEEECHH---------HHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEE
T ss_pred             CcCCceEEEEcccccCCceeeecchh---------hccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEEEE
Confidence            543 3777776   111112211100         000112456899998888999999999999999999988644321


Q ss_pred             --c-C-------CCCcceEEEEecCCceEEEEE
Q 014345          175 --Y-G-------SSFPLGIAVLLAAGFFGYMLA  197 (426)
Q Consensus       175 --~-~-------~g~P~GIAv~~g~g~~Gy~~a  197 (426)
                        . +       ...|-|||++..+  .-|+.+
T Consensus       211 ~L~~g~~~l~~~~~qpEGia~d~~G--~lyIvs  241 (255)
T 3qqz_A          211 SLTKGSRGLSHNIKQAEGVAMDASG--NIYIVS  241 (255)
T ss_dssp             ECSTTGGGCSSCCCSEEEEEECTTC--CEEEEE
T ss_pred             EcCCccCCcccccCCCCeeEECCCC--CEEEEc
Confidence              1 1       2368999999653  245543

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=97.82  E-value=0.0014  Score=62.93  Aligned_cols=127  Identities=20%  Similarity=0.279  Sum_probs=87.1

Q ss_pred             CceEEEEcCCCc-EEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCC-EEEEEC
Q 014345           22 EPYSVEVLPGGE-LLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIADT   99 (426)
Q Consensus        22 ~P~GIaVd~dG~-LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~-LYVADt   99 (426)
                      .+.+++++++|. ||++....+.|..++....   +.......                -..+.+++++++|+ ||++..
T Consensus        75 ~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~---~~~~~~~~----------------~~~~~~~~~s~dg~~l~~~~~  135 (391)
T 1l0q_A           75 SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSN---TVAGTVKT----------------GKSPLGLALSPDGKKLYVTNN  135 (391)
T ss_dssp             SEEEEEECTTSSEEEEEETTTTEEEEEETTTT---EEEEEEEC----------------SSSEEEEEECTTSSEEEEEET
T ss_pred             CccceEECCCCCEEEEEECCCCEEEEEECCCC---eEEEEEeC----------------CCCcceEEECCCCCEEEEEeC
Confidence            689999999987 7889888899999998752   22222211                01368999999987 779999


Q ss_pred             CCCEEEEEc-C-CCc-EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCC-eEEEEECCCCeEEEEEcCCCceEee-
Q 014345          100 MNMAIRKIS-D-SGV-TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSC-SLLVIDRGNRAIREIQLHFDDCAYQ-  174 (426)
Q Consensus       100 ~N~rIrk~d-~-g~V-stIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G-~LYVaDsgN~rIr~I~l~~~~~~~~-  174 (426)
                      .++.|+.++ . +.. .++..+                  ..|.++++ .+++ .||++...++.|+.+++....+... 
T Consensus       136 ~~~~v~~~d~~~~~~~~~~~~~------------------~~~~~~~~-~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~  196 (391)
T 1l0q_A          136 GDKTVSVINTVTKAVINTVSVG------------------RSPKGIAV-TPDGTKVYVANFDSMSISVIDTVTNSVIDTV  196 (391)
T ss_dssp             TTTEEEEEETTTTEEEEEEECC------------------SSEEEEEE-CTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             CCCEEEEEECCCCcEEEEEecC------------------CCcceEEE-CCCCCEEEEEeCCCCEEEEEECCCCeEEEEE
Confidence            899999999 3 333 333221                  13567774 5555 6889998899999999887655432 


Q ss_pred             cCCCCcceEEEE
Q 014345          175 YGSSFPLGIAVL  186 (426)
Q Consensus       175 ~~~g~P~GIAv~  186 (426)
                      .....+.++++.
T Consensus       197 ~~~~~~~~~~~~  208 (391)
T 1l0q_A          197 KVEAAPSGIAVN  208 (391)
T ss_dssp             ECSSEEEEEEEC
T ss_pred             ecCCCccceEEC
Confidence            222334444443

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.78  E-value=0.00048  Score=66.25  Aligned_cols=125  Identities=9%  Similarity=0.156  Sum_probs=80.9

Q ss_pred             ceEEEEcCCC-cEEEEECCCC-eEEEEeCCCCccc-ccEEEecCCCCcccccCCcccccccCCcceEEEcC-CCCEEEEE
Q 014345           23 PYSVEVLPGG-ELLILDSANS-NLYRISSSLSLYS-RPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD-RGNIYIAD   98 (426)
Q Consensus        23 P~GIaVd~dG-~LYVaD~~n~-rI~kid~dg~~~g-~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~-dG~LYVAD   98 (426)
                      ..|||+|+++ .||++.-... .|+.++.  -..+ .+... .... ..       ....+..+.+|++|+ .|.+||..
T Consensus       123 ~EGLA~d~~~~~L~va~E~~p~~i~~~~g--~~~~~~l~i~-~~~~-~~-------~~~~~~d~S~l~~dp~tg~lliLS  191 (255)
T 3qqz_A          123 FEGLAYSRQDHTFWFFKEKNPIEVYKVNG--LLSSNELHIS-KDKA-LQ-------RQFTLDDVSGAEFNQQKNTLLVLS  191 (255)
T ss_dssp             CEEEEEETTTTEEEEEEESSSEEEEEEES--TTCSSCCEEE-ECHH-HH-------HTCCSSCCCEEEEETTTTEEEEEE
T ss_pred             cceEEEeCCCCEEEEEECcCCceEEEEcc--cccCCceeee-cchh-hc-------cccccCCceeEEEcCCCCeEEEEE
Confidence            4999999976 6888765444 7888872  1101 12221 1100 00       011255689999998 57899999


Q ss_pred             CCCCEEEEEc-CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcC
Q 014345           99 TMNMAIRKIS-DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLH  167 (426)
Q Consensus        99 t~N~rIrk~d-~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~  167 (426)
                      ..+++|..+| +|.+.....-..+.       ......+..|.||+ +|++|+|||+.-. +.++++...
T Consensus       192 ~~s~~L~~~d~~g~~~~~~~L~~g~-------~~l~~~~~qpEGia-~d~~G~lyIvsE~-n~~y~f~~~  252 (255)
T 3qqz_A          192 HESRALQEVTLVGEVIGEMSLTKGS-------RGLSHNIKQAEGVA-MDASGNIYIVSEP-NRFYRFTPQ  252 (255)
T ss_dssp             TTTTEEEEECTTCCEEEEEECSTTG-------GGCSSCCCSEEEEE-ECTTCCEEEEETT-TEEEEEEC-
T ss_pred             CCCCeEEEEcCCCCEEEEEEcCCcc-------CCcccccCCCCeeE-ECCCCCEEEEcCC-ceEEEEEec
Confidence            9999999999 66653332211111       01223478899999 6999999999766 599999764

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=97.75  E-value=0.00071  Score=70.27  Aligned_cols=160  Identities=14%  Similarity=0.173  Sum_probs=98.1

Q ss_pred             CCcEEEEEecCCCCCCCceEEEEcCCCc--EEEEECCCCeEEEEeCCCCcccccEEEecCCC-CcccccCCcccccccCC
Q 014345            6 SGYTVETVFDGSKLGIEPYSVEVLPGGE--LLILDSANSNLYRISSSLSLYSRPKLVAGSAE-GYSGHVDGKPREARMNH   82 (426)
Q Consensus         6 ~G~tv~tv~~g~~l~~~P~GIaVd~dG~--LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~-G~~G~~dG~a~~A~Ln~   82 (426)
                      .|+.+++++++..   .|.+|++.+||.  |||++. .++|++++.++...  ...+++... ...|.     .......
T Consensus         2 ~gf~v~~va~gL~---~P~~~a~~pdG~~rl~V~er-~G~i~~~~~~g~~~--~~~~~~~~~~~~~g~-----~~~~e~G   70 (463)
T 2wg3_C            2 NCFCIQEVVSGLR---QPVGALHSGDGSQRLFILEK-EGYVKILTPEGEIF--KEPYLDIHKLVQSGI-----KGGDERG   70 (463)
T ss_dssp             CCEEEEEEEEEES---SEEEEECCSSSSCCEEEEET-TTEEEEECTTSCBC--SSCSEECTTTBCCCC-----SSSCCCS
T ss_pred             CceEEEEeccCCC---CceEEEECCCCCeEEEEEeC-CceEEEEeCCCCee--eeeecCCcceeccCc-----cccCCCc
Confidence            5788898888644   899999999986  999996 68999998775321  112222210 00110     0001234


Q ss_pred             cceEEEcCC----CCEEEEECCC------------CEEEEEc-C-C--------CcEEEeCCccCCCCCCCCCCcccccC
Q 014345           83 PKGLTVDDR----GNIYIADTMN------------MAIRKIS-D-S--------GVTTIAGGKWGRGGGHVDGPSEDAKF  136 (426)
Q Consensus        83 P~GIaVd~d----G~LYVADt~N------------~rIrk~d-~-g--------~VstIaGg~~g~~~G~~dG~~~~a~f  136 (426)
                      +.|||++++    +.|||+-+..            .+|.++. + +        ...+|.......            .-
T Consensus        71 llgia~~P~f~~n~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~------------~~  138 (463)
T 2wg3_C           71 LLSLAFHPNYKKNGKLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELH------------RK  138 (463)
T ss_dssp             EEEEEECTTHHHHCEEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESS------------SS
T ss_pred             ceeeEeCCCCcCCCEEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCC------------Cc
Confidence            679999985    8899986521            3666665 2 1        123333211000            01


Q ss_pred             CCCCeeEEECCCCeEEEE--ECC---------------CCeEEEEEcCCC---------------------ceEeecCCC
Q 014345          137 SNDFDVVYIGSSCSLLVI--DRG---------------NRAIREIQLHFD---------------------DCAYQYGSS  178 (426)
Q Consensus       137 ~~P~gIa~vd~~G~LYVa--Dsg---------------N~rIr~I~l~~~---------------------~~~~~~~~g  178 (426)
                      -.-..|+ ++++|.|||+  |.+               .+.|.+|++++.                     .-.+..+.-
T Consensus       139 H~g~~l~-fgpDG~LYv~~Gd~~~~~~~~~~~q~~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~R  217 (463)
T 2wg3_C          139 HLGGQLL-FGPDGFLYIILGDGMITLDDMEEMDGLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLH  217 (463)
T ss_dssp             SCEEEEE-ECTTSCEEEEECCTTCCHHHHHHCTTCCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCS
T ss_pred             ccCCcEe-ECCCCcEEEEeCCCCCCCCccccccCcCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCC
Confidence            1234677 6899999998  332               367999999873                     124455666


Q ss_pred             CcceEEEEecC
Q 014345          179 FPLGIAVLLAA  189 (426)
Q Consensus       179 ~P~GIAv~~g~  189 (426)
                      .|.|++++...
T Consensus       218 Np~gla~dp~t  228 (463)
T 2wg3_C          218 DPGRCAVDRHP  228 (463)
T ss_dssp             SCCBEEEESSC
T ss_pred             CcceEEECCCC
Confidence            79999999763

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=97.74  E-value=0.00086  Score=65.11  Aligned_cols=149  Identities=17%  Similarity=0.060  Sum_probs=87.9

Q ss_pred             CCceEEEEcCCCc-EEEEECCCCeEEEEeCC-CCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCC-EEEE
Q 014345           21 IEPYSVEVLPGGE-LLILDSANSNLYRISSS-LSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIA   97 (426)
Q Consensus        21 ~~P~GIaVd~dG~-LYVaD~~n~rI~kid~d-g~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~-LYVA   97 (426)
                      ..|+++++++||. ||++|...++|..++.+ .   +++..+.... ...          .-..|.+++++++|+ ||++
T Consensus       145 ~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~---g~~~~~~~~~-~~~----------~g~~p~~~~~spdg~~l~v~  210 (365)
T 1jof_A          145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLAS---GEVELVGSVD-APD----------PGDHPRWVAMHPTGNYLYAL  210 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTT---SCEEEEEEEE-CSS----------TTCCEEEEEECTTSSEEEEE
T ss_pred             CcceEEEECCCCCEEEEEcCCCCEEEEEEECCC---CCEEEeeeEe-cCC----------CCCCCCEeEECCCCCEEEEE
Confidence            4799999999997 89999888999999876 3   3333221100 000          013489999999995 8999


Q ss_pred             ECCCCEEEEEc-C---CCcE----EEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCC-eEEEEECCCC-----eEEE
Q 014345           98 DTMNMAIRKIS-D---SGVT----TIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSC-SLLVIDRGNR-----AIRE  163 (426)
Q Consensus        98 Dt~N~rIrk~d-~---g~Vs----tIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G-~LYVaDsgN~-----rIr~  163 (426)
                      +..++.|..++ +   +...    ++.....+. .+.. +.  ......|.++++++++| .||+++++.+     +|..
T Consensus       211 ~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~-~g~~-~~--~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v  286 (365)
T 1jof_A          211 MEAGNRICEYVIDPATHMPVYTHHSFPLIPPGI-PDRD-PE--TGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAG  286 (365)
T ss_dssp             ETTTTEEEEEEECTTTCCEEEEEEEEESSCTTC-CCBC-TT--TSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEE
T ss_pred             ECCCCeEEEEEEeCCCCcEEEccceEEcCCCCc-CCcc-cc--cccccccccEEEECCCCCEEEEECCCCCCCCCCeEEE
Confidence            98888888875 2   3332    222111100 0000 00  00122577887346666 6899998766     8999


Q ss_pred             EEcC-CCceEe----ec-CCCCcceEEEEe
Q 014345          164 IQLH-FDDCAY----QY-GSSFPLGIAVLL  187 (426)
Q Consensus       164 I~l~-~~~~~~----~~-~~g~P~GIAv~~  187 (426)
                      ++++ ......    .. ....|.++++..
T Consensus       287 ~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp  316 (365)
T 1jof_A          287 FKLRDCGSIEKQLFLSPTPTSGGHSNAVSP  316 (365)
T ss_dssp             EEECTTSCEEEEEEEEECSSCCTTCCCEEE
T ss_pred             EEECCCCCEEEeeeeeecCCCCcccceecC
Confidence            9875 222321    11 223466666654

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=97.73  E-value=0.00046  Score=67.07  Aligned_cols=132  Identities=12%  Similarity=0.034  Sum_probs=78.3

Q ss_pred             CCceEEEEcCCCc-EEEEECCCCeEEEEeCCCCcccccE----EEecCCCCcccccCCcccccccCCcceEE-EcCCCC-
Q 014345           21 IEPYSVEVLPGGE-LLILDSANSNLYRISSSLSLYSRPK----LVAGSAEGYSGHVDGKPREARMNHPKGLT-VDDRGN-   93 (426)
Q Consensus        21 ~~P~GIaVd~dG~-LYVaD~~n~rI~kid~dg~~~g~v~----~vaG~~~G~~G~~dG~a~~A~Ln~P~GIa-Vd~dG~-   93 (426)
                      ..|.++++++||. ||+++..++.|..++.+.. .|++.    .+...+.+..|. .+...  ....|.+|+ ++++|+ 
T Consensus       193 ~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~-~g~~~~~~~~~~~~~~~~~g~-~~~~~--~~~~~~~i~~~spdG~~  268 (365)
T 1jof_A          193 DHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA-THMPVYTHHSFPLIPPGIPDR-DPETG--KGLYRADVCALTFSGKY  268 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTT-TCCEEEEEEEEESSCTTCCCB-CTTTS--SBSEEEEEEEECTTSSE
T ss_pred             CCCCEeEECCCCCEEEEEECCCCeEEEEEEeCC-CCcEEEccceEEcCCCCcCCc-ccccc--cccccccEEEECCCCCE
Confidence            4699999999996 8899887888877754311 02322    121111111111 00000  122588999 999996 


Q ss_pred             EEEEECCCC-----EEEEEc---CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEEC---CCCeEEEEECCCCeEE
Q 014345           94 IYIADTMNM-----AIRKIS---DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIG---SSCSLLVIDRGNRAIR  162 (426)
Q Consensus        94 LYVADt~N~-----rIrk~d---~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd---~~G~LYVaDsgN~rIr  162 (426)
                      ||+++...+     .|.+++   ++.+..+......             .-..|.++++.+   +...||+++..++.|.
T Consensus       269 l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~-------------~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~  335 (365)
T 1jof_A          269 MFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPT-------------PTSGGHSNAVSPCPWSDEWMAITDDQEGWLE  335 (365)
T ss_dssp             EEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEEC-------------SSCCTTCCCEEECTTCTTEEEEECSSSCEEE
T ss_pred             EEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeec-------------CCCCcccceecCCCcCCCEEEEEEcCCCeEE
Confidence            899987655     787776   3444432110000             011466777544   3558999998889999


Q ss_pred             EEEcCCC
Q 014345          163 EIQLHFD  169 (426)
Q Consensus       163 ~I~l~~~  169 (426)
                      .++.+..
T Consensus       336 v~~~~~~  342 (365)
T 1jof_A          336 IYRWKDE  342 (365)
T ss_dssp             EEEEETT
T ss_pred             EEEEchh
Confidence            8887655

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=97.69  E-value=0.0024  Score=61.21  Aligned_cols=113  Identities=15%  Similarity=0.362  Sum_probs=81.0

Q ss_pred             CceEEEEcCCCc-EEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCC-EEEEEC
Q 014345           22 EPYSVEVLPGGE-LLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIADT   99 (426)
Q Consensus        22 ~P~GIaVd~dG~-LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~-LYVADt   99 (426)
                      .|.+++++++|. ||++....+.|..++...   ++........                ..+.+++++++|+ ||++..
T Consensus        33 ~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~---~~~~~~~~~~----------------~~v~~~~~spdg~~l~~~~~   93 (391)
T 1l0q_A           33 NPMGAVISPDGTKVYVANAHSNDVSIIDTAT---NNVIATVPAG----------------SSPQGVAVSPDGKQVYVTNM   93 (391)
T ss_dssp             SEEEEEECTTSSEEEEEEGGGTEEEEEETTT---TEEEEEEECS----------------SSEEEEEECTTSSEEEEEET
T ss_pred             CcceEEECCCCCEEEEECCCCCeEEEEECCC---CeEEEEEECC----------------CCccceEECCCCCEEEEEEC
Confidence            589999999997 678888889999999864   3332222110                1478999999987 889998


Q ss_pred             CCCEEEEEc-C-CCc-EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCC-eEEEEECCCCeEEEEEcCCCceE
Q 014345          100 MNMAIRKIS-D-SGV-TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSC-SLLVIDRGNRAIREIQLHFDDCA  172 (426)
Q Consensus       100 ~N~rIrk~d-~-g~V-stIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G-~LYVaDsgN~rIr~I~l~~~~~~  172 (426)
                      .++.|++++ . +.. .++...                  ..+.+++ +.+++ .||++...++.|+.+++....+.
T Consensus        94 ~~~~v~v~d~~~~~~~~~~~~~------------------~~~~~~~-~s~dg~~l~~~~~~~~~v~~~d~~~~~~~  151 (391)
T 1l0q_A           94 ASSTLSVIDTTSNTVAGTVKTG------------------KSPLGLA-LSPDGKKLYVTNNGDKTVSVINTVTKAVI  151 (391)
T ss_dssp             TTTEEEEEETTTTEEEEEEECS------------------SSEEEEE-ECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CCCEEEEEECCCCeEEEEEeCC------------------CCcceEE-ECCCCCEEEEEeCCCCEEEEEECCCCcEE
Confidence            889999999 3 333 233221                  1357787 45555 57899988999999998765543

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=97.54  E-value=0.00066  Score=63.46  Aligned_cols=117  Identities=9%  Similarity=-0.007  Sum_probs=77.9

Q ss_pred             ceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCC-EEEEECCC
Q 014345           23 PYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIADTMN  101 (426)
Q Consensus        23 P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~-LYVADt~N  101 (426)
                      +.|+++.+++.+||+...++.|.+++..+   +++......+        .      ...|.+++++++|+ +||+...+
T Consensus         2 ~~g~~~~~~~~~~v~~~~~~~v~~~d~~~---~~~~~~~~~~--------~------~~~~~~~~~s~dg~~~~v~~~~~   64 (349)
T 1jmx_B            2 DTGPALKAGHEYMIVTNYPNNLHVVDVAS---DTVYKSCVMP--------D------KFGPGTAMMAPDNRTAYVLNNHY   64 (349)
T ss_dssp             --CCCCCTTCEEEEEEETTTEEEEEETTT---TEEEEEEECS--------S------CCSSCEEEECTTSSEEEEEETTT
T ss_pred             CccccccCCCEEEEEeCCCCeEEEEECCC---CcEEEEEecC--------C------CCCCceeEECCCCCEEEEEeCCC
Confidence            35778888899999999999999999874   2322221110        0      11388999999987 89999989


Q ss_pred             CEEEEEc-C-CCc-EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCC-eEEEEECC-----------CCeEEEEEc
Q 014345          102 MAIRKIS-D-SGV-TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSC-SLLVIDRG-----------NRAIREIQL  166 (426)
Q Consensus       102 ~rIrk~d-~-g~V-stIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G-~LYVaDsg-----------N~rIr~I~l  166 (426)
                      +.|.+++ . +.+ .++.....   .        ...-..|.+++ ++++| .||+++..           ++.|.++++
T Consensus        65 ~~i~~~d~~t~~~~~~~~~~~~---~--------~~~~~~~~~~~-~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~  132 (349)
T 1jmx_B           65 GDIYGIDLDTCKNTFHANLSSV---P--------GEVGRSMYSFA-ISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFST  132 (349)
T ss_dssp             TEEEEEETTTTEEEEEEESCCS---T--------TEEEECSSCEE-ECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEG
T ss_pred             CcEEEEeCCCCcEEEEEEcccc---c--------ccccccccceE-ECCCCCEEEEEcccccccccccccCCCeEEEEEC
Confidence            9999999 3 333 23321100   0        00112478888 46666 68888854           579999998


Q ss_pred             CC
Q 014345          167 HF  168 (426)
Q Consensus       167 ~~  168 (426)
                      ..
T Consensus       133 ~~  134 (349)
T 1jmx_B          133 AD  134 (349)
T ss_dssp             GG
T ss_pred             CC
Confidence            75

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.53  E-value=0.0017  Score=62.25  Aligned_cols=110  Identities=13%  Similarity=0.038  Sum_probs=76.1

Q ss_pred             CceEEEEcCCCcEEEEECC--CCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEEC
Q 014345           22 EPYSVEVLPGGELLILDSA--NSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADT   99 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~--n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt   99 (426)
                      .-.||+++. +.||++...  .+.|.++|...   |++.....-+...              ...||+++. +.||+++.
T Consensus        22 ftqGL~~~~-~~LyestG~~g~S~v~~vD~~t---gkv~~~~~l~~~~--------------fgeGi~~~~-~~ly~ltw   82 (243)
T 3mbr_X           22 FTEGLFYLR-GHLYESTGETGRSSVRKVDLET---GRILQRAEVPPPY--------------FGAGIVAWR-DRLIQLTW   82 (243)
T ss_dssp             CEEEEEEET-TEEEEEECCTTSCEEEEEETTT---CCEEEEEECCTTC--------------CEEEEEEET-TEEEEEES
T ss_pred             ccccEEEEC-CEEEEECCCCCCceEEEEECCC---CCEEEEEeCCCCc--------------ceeEEEEeC-CEEEEEEe
Confidence            457999986 789999654  57999999985   3333322111011              236788874 68999999


Q ss_pred             CCCEEEEEcCCC---cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCce
Q 014345          100 MNMAIRKISDSG---VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDC  171 (426)
Q Consensus       100 ~N~rIrk~d~g~---VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~  171 (426)
                      .++++.++|...   +.++.-+.                  .+++|+ . +.+.||++| +.++|..+|+.....
T Consensus        83 ~~~~v~v~D~~tl~~~~ti~~~~------------------~Gwglt-~-dg~~L~vSd-gs~~l~~iDp~t~~~  136 (243)
T 3mbr_X           83 RNHEGFVYDLATLTPRARFRYPG------------------EGWALT-S-DDSHLYMSD-GTAVIRKLDPDTLQQ  136 (243)
T ss_dssp             SSSEEEEEETTTTEEEEEEECSS------------------CCCEEE-E-CSSCEEEEC-SSSEEEEECTTTCCE
T ss_pred             eCCEEEEEECCcCcEEEEEeCCC------------------CceEEe-e-CCCEEEEEC-CCCeEEEEeCCCCeE
Confidence            999999999444   34443210                  357887 3 457999999 589999999886443

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=97.51  E-value=0.0035  Score=57.99  Aligned_cols=115  Identities=12%  Similarity=0.117  Sum_probs=75.0

Q ss_pred             CceEEEEcCCCc-EEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCC-CEEEEEC
Q 014345           22 EPYSVEVLPGGE-LLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRG-NIYIADT   99 (426)
Q Consensus        22 ~P~GIaVd~dG~-LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG-~LYVADt   99 (426)
                      .|.+++++++|. ||+++...+.|.+++..+   ++........  ..+.        .-..|.+++++++| .||+++.
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~---~~~~~~~~~~--~~~~--------~~~~~~~~~~s~dg~~l~~~~~  101 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVT---GETLGRIDLS--TPEE--------RVKSLFGAALSPDGKTLAIYES  101 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTT---CCEEEEEECC--BTTE--------EEECTTCEEECTTSSEEEEEEE
T ss_pred             CccceEEcCCCCEEEEEeCCCCeEEEEECCC---CCeEeeEEcC--Cccc--------ccccccceEECCCCCEEEEEec
Confidence            489999999985 899998889999999864   2322211110  0000        01248899999998 5889862


Q ss_pred             -----------CCCEEEEEc-CC-Cc-EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCe-EEEEECCCCeEEEE
Q 014345          100 -----------MNMAIRKIS-DS-GV-TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCS-LLVIDRGNRAIREI  164 (426)
Q Consensus       100 -----------~N~rIrk~d-~g-~V-stIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~-LYVaDsgN~rIr~I  164 (426)
                                 .++.|.+++ .. .+ ..+..+                  ..|.+++ ++++|. ||++   ++.|..+
T Consensus       102 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~------------------~~~~~~~-~s~dg~~l~~~---~~~i~~~  159 (337)
T 1pby_B          102 PVRLELTHFEVQPTRVALYDAETLSRRKAFEAP------------------RQITMLA-WARDGSKLYGL---GRDLHVM  159 (337)
T ss_dssp             EEEECSSCEEECCCEEEEEETTTTEEEEEEECC------------------SSCCCEE-ECTTSSCEEEE---SSSEEEE
T ss_pred             ccccccccccccCceEEEEECCCCcEEEEEeCC------------------CCcceeE-ECCCCCEEEEe---CCeEEEE
Confidence                       358899999 33 33 233211                  1367787 566664 8888   4678888


Q ss_pred             EcCCCce
Q 014345          165 QLHFDDC  171 (426)
Q Consensus       165 ~l~~~~~  171 (426)
                      ++....+
T Consensus       160 d~~~~~~  166 (337)
T 1pby_B          160 DPEAGTL  166 (337)
T ss_dssp             ETTTTEE
T ss_pred             ECCCCcE
Confidence            8876544

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=97.50  E-value=0.0046  Score=64.63  Aligned_cols=139  Identities=6%  Similarity=-0.045  Sum_probs=89.9

Q ss_pred             CceEEEEcCCCc-EEEEECCCCeEEEEeC--CCCcccc-cEEEecCCCCcccccCCcccccccCCcceEEEcC----CCC
Q 014345           22 EPYSVEVLPGGE-LLILDSANSNLYRISS--SLSLYSR-PKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD----RGN   93 (426)
Q Consensus        22 ~P~GIaVd~dG~-LYVaD~~n~rI~kid~--dg~~~g~-v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~----dG~   93 (426)
                      .|+++++++||. ||+++.. +.|..++.  ..   ++ +..+..      |           ..|.+|++++    +|+
T Consensus       180 ~~~~v~~spdg~~l~v~~~d-~~V~v~D~~~~t---~~~~~~i~~------g-----------~~p~~va~sp~~~~dg~  238 (543)
T 1nir_A          180 AVHISRMSASGRYLLVIGRD-ARIDMIDLWAKE---PTKVAEIKI------G-----------IEARSVESSKFKGYEDR  238 (543)
T ss_dssp             TEEEEEECTTSCEEEEEETT-SEEEEEETTSSS---CEEEEEEEC------C-----------SEEEEEEECCSTTCTTT
T ss_pred             ccceEEECCCCCEEEEECCC-CeEEEEECcCCC---CcEEEEEec------C-----------CCcceEEeCCCcCCCCC
Confidence            389999999997 8888876 89999998  32   22 222211      0           1389999999    886


Q ss_pred             -EEEEECCCCEEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccc-cCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCC
Q 014345           94 -IYIADTMNMAIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDA-KFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHF  168 (426)
Q Consensus        94 -LYVADt~N~rIrk~d--~g~-VstIaGg~~g~~~G~~dG~~~~a-~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~  168 (426)
                       |||++...+.|.++|  ++. +.++.......     ++  .+. .-..+.+|++......+||+..+.+.|..++...
T Consensus       239 ~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~-----~~--~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~  311 (543)
T 1nir_A          239 YTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTV-----DT--QTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKD  311 (543)
T ss_dssp             EEEEEEEESSEEEEEETTTCCEEEEEECCEECS-----SS--CCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTT
T ss_pred             EEEEEEccCCeEEEEeccccccceeecccCccc-----Cc--cccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecC
Confidence             899998889999999  344 34444321100     00  000 0124667875444668999999999999999875


Q ss_pred             Cce---EeecCCCCcceEEEEec
Q 014345          169 DDC---AYQYGSSFPLGIAVLLA  188 (426)
Q Consensus       169 ~~~---~~~~~~g~P~GIAv~~g  188 (426)
                      ..+   ........|.+++++..
T Consensus       312 ~~~l~~~~i~~~~~~~~~~~spd  334 (543)
T 1nir_A          312 IDNLTVTSIGAAPFLHDGGWDSS  334 (543)
T ss_dssp             SSSCEEEEEECCSSCCCEEECTT
T ss_pred             CCcceeEEeccCcCccCceECCC
Confidence            432   12223345777777643

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=97.49  E-value=0.0022  Score=59.87  Aligned_cols=117  Identities=13%  Similarity=0.157  Sum_probs=74.4

Q ss_pred             CceEEEEcCCCc-EEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCC-EEEEEC
Q 014345           22 EPYSVEVLPGGE-LLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIADT   99 (426)
Q Consensus        22 ~P~GIaVd~dG~-LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~-LYVADt   99 (426)
                      .|.+++++++|+ +|++...++.|.+++.++   ++........ ...    +    .+-..|.+++++++|+ ||+++.
T Consensus        44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t---~~~~~~~~~~-~~~----~----~~~~~~~~~~~spdg~~l~~~~~  111 (349)
T 1jmx_B           44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDT---CKNTFHANLS-SVP----G----EVGRSMYSFAISPDGKEVYATVN  111 (349)
T ss_dssp             SSCEEEECTTSSEEEEEETTTTEEEEEETTT---TEEEEEEESC-CST----T----EEEECSSCEEECTTSSEEEEEEE
T ss_pred             CCceeEECCCCCEEEEEeCCCCcEEEEeCCC---CcEEEEEEcc-ccc----c----cccccccceEECCCCCEEEEEcc
Confidence            599999999997 899998899999999874   2322222110 000    0    0123488999999986 788874


Q ss_pred             C-----------CCEEEEEc-C-CCc----EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEE
Q 014345          100 M-----------NMAIRKIS-D-SGV----TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIR  162 (426)
Q Consensus       100 ~-----------N~rIrk~d-~-g~V----stIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr  162 (426)
                      .           ++.|.+++ . +.+    .+...                  -..+.+++ ++++|.||+++   +.|.
T Consensus       112 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~------------------~~~~~~~~-~s~dg~l~~~~---~~i~  169 (349)
T 1jmx_B          112 PTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM------------------PRQVYLMR-AADDGSLYVAG---PDIY  169 (349)
T ss_dssp             EEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC------------------CSSCCCEE-ECTTSCEEEES---SSEE
T ss_pred             cccccccccccCCCeEEEEECCCccccceeeeccC------------------CCccccee-ECCCCcEEEcc---CcEE
Confidence            3           47888888 3 222    11111                  01356777 57777888864   3488


Q ss_pred             EEEcCCCceE
Q 014345          163 EIQLHFDDCA  172 (426)
Q Consensus       163 ~I~l~~~~~~  172 (426)
                      ++++....+.
T Consensus       170 ~~d~~~~~~~  179 (349)
T 1jmx_B          170 KMDVKTGKYT  179 (349)
T ss_dssp             EECTTTCCEE
T ss_pred             EEeCCCCcee
Confidence            8887665443

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.41  E-value=0.0018  Score=62.92  Aligned_cols=107  Identities=12%  Similarity=0.035  Sum_probs=75.9

Q ss_pred             eEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCCCE
Q 014345           24 YSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMA  103 (426)
Q Consensus        24 ~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N~r  103 (426)
                      .||.++ ++.||++....++|.++|..+...  +..+.+.  ..              ...||+++. +.||+++..+++
T Consensus        58 qGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv--~~~~l~~--~~--------------FgeGit~~g-~~Ly~ltw~~~~  117 (268)
T 3nok_A           58 QGLVFH-QGHFFESTGHQGTLRQLSLESAQP--VWMERLG--NI--------------FAEGLASDG-ERLYQLTWTEGL  117 (268)
T ss_dssp             EEEEEE-TTEEEEEETTTTEEEECCSSCSSC--SEEEECT--TC--------------CEEEEEECS-SCEEEEESSSCE
T ss_pred             ceEEEE-CCEEEEEcCCCCEEEEEECCCCcE--EeEECCC--Cc--------------ceeEEEEeC-CEEEEEEccCCE
Confidence            799998 578999999999999999985331  1112211  11              136788874 589999999999


Q ss_pred             EEEEcCCC---cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCce
Q 014345          104 IRKISDSG---VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDC  171 (426)
Q Consensus       104 Irk~d~g~---VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~  171 (426)
                      +.++|...   +.++.-.                  ..+++|+. | .+.||++| +.++|+.||+.....
T Consensus       118 v~V~D~~Tl~~~~ti~~~------------------~eGwGLt~-D-g~~L~vSd-Gs~~l~~iDp~T~~v  167 (268)
T 3nok_A          118 LFTWSGMPPQRERTTRYS------------------GEGWGLCY-W-NGKLVRSD-GGTMLTFHEPDGFAL  167 (268)
T ss_dssp             EEEEETTTTEEEEEEECS------------------SCCCCEEE-E-TTEEEEEC-SSSEEEEECTTTCCE
T ss_pred             EEEEECCcCcEEEEEeCC------------------CceeEEec-C-CCEEEEEC-CCCEEEEEcCCCCeE
Confidence            99999443   3444321                  13577773 3 57999999 689999999886443

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.39  E-value=0.0024  Score=61.86  Aligned_cols=123  Identities=16%  Similarity=0.145  Sum_probs=79.4

Q ss_pred             CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEE-ecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECC
Q 014345           22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLV-AGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTM  100 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~v-aG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~  100 (426)
                      .+.|++.| .+.||++| +.++|..+|+.+..  ....+ ++.        +|.    .+..++.+... +|.||++...
T Consensus       128 eG~glt~d-g~~L~~Sd-Gs~~i~~iDp~T~~--v~~~I~V~~--------~g~----~~~~lNELe~~-~G~lyan~w~  190 (262)
T 3nol_A          128 EGWGLTHN-DQYLIMSD-GTPVLRFLDPESLT--PVRTITVTA--------HGE----ELPELNELEWV-DGEIFANVWQ  190 (262)
T ss_dssp             CCCCEEEC-SSCEEECC-SSSEEEEECTTTCS--EEEEEECEE--------TTE----ECCCEEEEEEE-TTEEEEEETT
T ss_pred             CceEEecC-CCEEEEEC-CCCeEEEEcCCCCe--EEEEEEecc--------CCc----cccccceeEEE-CCEEEEEEcc
Confidence            45666655 35699999 47899999998522  12221 111        111    25567777776 7899999999


Q ss_pred             CCEEEEEc--CCCcE-EEeCC-ccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcC
Q 014345          101 NMAIRKIS--DSGVT-TIAGG-KWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLH  167 (426)
Q Consensus       101 N~rIrk~d--~g~Vs-tIaGg-~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~  167 (426)
                      .+.|.+||  +|.|. +|.-. .... ..    . .......|+|||+.+..+.|||+.-.=..+.+|.+.
T Consensus       191 ~~~I~vIDp~tG~V~~~Id~~~L~~~-~~----~-~~~~~~vlNGIA~dp~~~~lfVTGK~Wp~~~ev~~~  255 (262)
T 3nol_A          191 TNKIVRIDPETGKVTGIIDLNGILAE-AG----P-LPSPIDVLNGIAWDKEHHRLFVTGKLWPKVFEITLT  255 (262)
T ss_dssp             SSEEEEECTTTCBEEEEEECTTGGGG-SC----S-CCSSCCCEEEEEEETTTTEEEEEETTCSEEEEEEEE
T ss_pred             CCeEEEEECCCCcEEEEEECCcCccc-cc----c-ccCcCCceEEEEEcCCCCEEEEECCCCCceEEEEEe
Confidence            99999999  55654 44321 1100 00    0 112345799999877788999999877788887753

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=97.35  E-value=0.0069  Score=58.84  Aligned_cols=128  Identities=17%  Similarity=0.121  Sum_probs=83.8

Q ss_pred             CceEEEEcCCCc-EEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCC-EEEEEC
Q 014345           22 EPYSVEVLPGGE-LLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIADT   99 (426)
Q Consensus        22 ~P~GIaVd~dG~-LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~-LYVADt   99 (426)
                      .|.+++++++|. ||++....+.|..++...   ++.......                -..|.+++++++|+ |+++..
T Consensus       213 ~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~---~~~~~~~~~----------------~~~~~~~~~~~~g~~l~~~~~  273 (433)
T 3bws_A          213 WSKILLYDPIRDLVYCSNWISEDISVIDRKT---KLEIRKTDK----------------IGLPRGLLLSKDGKELYIAQF  273 (433)
T ss_dssp             SEEEEEEETTTTEEEEEETTTTEEEEEETTT---TEEEEECCC----------------CSEEEEEEECTTSSEEEEEEE
T ss_pred             CeeEEEEcCCCCEEEEEecCCCcEEEEECCC---CcEEEEecC----------------CCCceEEEEcCCCCEEEEEEC
Confidence            689999999887 678888889999999864   222222111                11278999999985 677764


Q ss_pred             -------CCCEEEEEc-C-CCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCC-eEEEEECCCCeEEEEEcCCC
Q 014345          100 -------MNMAIRKIS-D-SGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSC-SLLVIDRGNRAIREIQLHFD  169 (426)
Q Consensus       100 -------~N~rIrk~d-~-g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G-~LYVaDsgN~rIr~I~l~~~  169 (426)
                             .++.|+.++ . +.+......                 -..|.++++ ++++ .||++...+++|+.+++...
T Consensus       274 ~~~~~~~~dg~i~~~d~~~~~~~~~~~~-----------------~~~~~~~~~-~~~g~~l~~~~~~~~~v~v~d~~~~  335 (433)
T 3bws_A          274 SASNQESGGGRLGIYSMDKEKLIDTIGP-----------------PGNKRHIVS-GNTENKIYVSDMCCSKIEVYDLKEK  335 (433)
T ss_dssp             ESCTTCSCCEEEEEEETTTTEEEEEEEE-----------------EECEEEEEE-CSSTTEEEEEETTTTEEEEEETTTT
T ss_pred             CCCccccCCCeEEEEECCCCcEEeeccC-----------------CCCcceEEE-CCCCCEEEEEecCCCEEEEEECCCC
Confidence                   356888998 3 333222211                 013567774 6666 79999999999999999865


Q ss_pred             ceEee-cCCCCcceEEEE
Q 014345          170 DCAYQ-YGSSFPLGIAVL  186 (426)
Q Consensus       170 ~~~~~-~~~g~P~GIAv~  186 (426)
                      .+... .....+.++++.
T Consensus       336 ~~~~~~~~~~~~~~~~~s  353 (433)
T 3bws_A          336 KVQKSIPVFDKPNTIALS  353 (433)
T ss_dssp             EEEEEEECSSSEEEEEEC
T ss_pred             cEEEEecCCCCCCeEEEc
Confidence            54332 222334555544

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=97.35  E-value=0.0065  Score=60.49  Aligned_cols=115  Identities=7%  Similarity=-0.074  Sum_probs=69.2

Q ss_pred             CCceEEEEcCCCc-EEEEEC---------CCCeEEEEeCCCCcccccEEE-ecCCCCcccccCCcccccccCCcceEEEc
Q 014345           21 IEPYSVEVLPGGE-LLILDS---------ANSNLYRISSSLSLYSRPKLV-AGSAEGYSGHVDGKPREARMNHPKGLTVD   89 (426)
Q Consensus        21 ~~P~GIaVd~dG~-LYVaD~---------~n~rI~kid~dg~~~g~v~~v-aG~~~G~~G~~dG~a~~A~Ln~P~GIaVd   89 (426)
                      ..| +|++++||. |||++.         ..+.|.+||.....  .+..+ .+.. .       .  ...-..|.+++++
T Consensus        67 ~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~--~~~~i~~~~~-~-------~--~~~g~~p~~~~~s  133 (373)
T 2mad_H           67 FLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFL--PIADIELPDA-P-------R--FDVGPYSWMNANT  133 (373)
T ss_pred             CCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCc--EEEEEECCCc-c-------c--cccCCCccceEEC
Confidence            368 999999986 999985         24678899886311  11111 1100 0       0  0002469999999


Q ss_pred             CCCC-EEEEECC-CCEEEEEcCCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEc
Q 014345           90 DRGN-IYIADTM-NMAIRKISDSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQL  166 (426)
Q Consensus        90 ~dG~-LYVADt~-N~rIrk~d~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l  166 (426)
                      +||+ |||+... .+.|.+|| .+-..+.-                 .+..|.++.+.+....+|++.+..+++..|+.
T Consensus       134 pDG~~l~v~n~~~~~~v~viD-~t~~~~~~-----------------~i~~~~~~~~~~~~~~~~~~~~~dg~~~~vd~  194 (373)
T 2mad_H          134 PNNADLLFFQFAAGPAVGLVV-QGGSSDDQ-----------------LLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDH  194 (373)
T ss_pred             CCCCEEEEEecCCCCeEEEEE-CCCCEEeE-----------------EcCCCceEEEEeCCCceEEEEcCCCCEEEEEC
Confidence            9986 9999865 68899998 44222110                 00112223333444567777777777777777

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=97.30  E-value=0.002  Score=69.04  Aligned_cols=120  Identities=18%  Similarity=0.201  Sum_probs=75.1

Q ss_pred             CCCceEEEEcC-CCcEEEEECCC---------------------CeEEEEeCCCCc------ccccEEEecCCCCccc--
Q 014345           20 GIEPYSVEVLP-GGELLILDSAN---------------------SNLYRISSSLSL------YSRPKLVAGSAEGYSG--   69 (426)
Q Consensus        20 ~~~P~GIaVd~-dG~LYVaD~~n---------------------~rI~kid~dg~~------~g~v~~vaG~~~G~~G--   69 (426)
                      ...|.+|++++ +|.|||+-+.+                     +.|+++..++..      .-.+.+++|.+....+  
T Consensus       383 f~RpEgi~~~p~~g~vY~a~Tn~~~rg~~~~~~~~~np~~~n~~G~I~r~~~~~~d~~a~~f~w~~~v~~g~p~~~~~~~  462 (592)
T 3zwu_A          383 MDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAGTP  462 (592)
T ss_dssp             EECEEEEEECTTTCCEEEEECCBTTTTSTTCCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTTSG
T ss_pred             EeccceeEEcCCCCEEEEEecCCcccccCcccccccccccCCcceeEEEEecCCCccccceeEEEEEEeccCcccccccc
Confidence            34899999997 89999997643                     579999765321      1123344454321111  


Q ss_pred             --ccCCcccccccCCcceEEEcCCCCEEEEEC------------CCCEEEEEc--CCCcEEEeCCccCCCCCCCCCCccc
Q 014345           70 --HVDGKPREARMNHPKGLTVDDRGNIYIADT------------MNMAIRKIS--DSGVTTIAGGKWGRGGGHVDGPSED  133 (426)
Q Consensus        70 --~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt------------~N~rIrk~d--~g~VstIaGg~~g~~~G~~dG~~~~  133 (426)
                        ..........|+.|.+|+||+.|+|||+.-            +|+.++..+  .+.+..++-+..+            
T Consensus       463 ~~~~~~~~~~~~f~~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~g------------  530 (592)
T 3zwu_A          463 KGGSSNITPQNMFNSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIG------------  530 (592)
T ss_dssp             GGCCTTCCTTTCCCCEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTT------------
T ss_pred             cccccccCCCCCccCCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCC------------
Confidence              001112234699999999999999999853            357788887  4567766654322            


Q ss_pred             ccCCCCCeeEEECCCCeEEEE
Q 014345          134 AKFSNDFDVVYIGSSCSLLVI  154 (426)
Q Consensus       134 a~f~~P~gIa~vd~~G~LYVa  154 (426)
                         +...|+++.++...|||+
T Consensus       531 ---aE~TG~~fspDg~tlfvn  548 (592)
T 3zwu_A          531 ---CEVTGISFSPDQKTLFVG  548 (592)
T ss_dssp             ---CEEEEEEECTTSSEEEEE
T ss_pred             ---ccCcCeeECCCCCEEEEE
Confidence               145788864444467765

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=97.27  E-value=0.0063  Score=59.15  Aligned_cols=109  Identities=11%  Similarity=0.089  Sum_probs=77.1

Q ss_pred             CceEEEEcCCCc-EEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCC-EEEEEC
Q 014345           22 EPYSVEVLPGGE-LLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIADT   99 (426)
Q Consensus        22 ~P~GIaVd~dG~-LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~-LYVADt   99 (426)
                      .|.+++++++|+ ||++....++|..++.++   ++.......                ...|.+++++++|. ||++..
T Consensus       304 ~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~---~~~~~~~~~----------------~~~~~~~~~s~dg~~l~~~~~  364 (433)
T 3bws_A          304 NKRHIVSGNTENKIYVSDMCCSKIEVYDLKE---KKVQKSIPV----------------FDKPNTIALSPDGKYLYVSCR  364 (433)
T ss_dssp             CEEEEEECSSTTEEEEEETTTTEEEEEETTT---TEEEEEEEC----------------SSSEEEEEECTTSSEEEEEEC
T ss_pred             CcceEEECCCCCEEEEEecCCCEEEEEECCC---CcEEEEecC----------------CCCCCeEEEcCCCCEEEEEec
Confidence            688999999985 899988999999999874   232222211                12378999999987 888887


Q ss_pred             CC--------------CEEEEEc--CCCc-EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCC-eEEEEECCCCeE
Q 014345          100 MN--------------MAIRKIS--DSGV-TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSC-SLLVIDRGNRAI  161 (426)
Q Consensus       100 ~N--------------~rIrk~d--~g~V-stIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G-~LYVaDsgN~rI  161 (426)
                      .+              +.|+.++  ++.+ .++.++                  ..|.++++ +++| .|++++..++.|
T Consensus       365 ~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~------------------~~~~~~~~-s~dg~~l~~~~~~d~~i  425 (433)
T 3bws_A          365 GPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG------------------NQPTGLDV-SPDNRYLVISDFLDHQI  425 (433)
T ss_dssp             CCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS------------------SSEEEEEE-CTTSCEEEEEETTTTEE
T ss_pred             CCCccccccccccccceEEEEEECCCCcEEEEecCC------------------CCCceEEE-cCCCCEEEEEECCCCeE
Confidence            64              3899999  3333 333221                  14678884 5565 677888878999


Q ss_pred             EEEEcCC
Q 014345          162 REIQLHF  168 (426)
Q Consensus       162 r~I~l~~  168 (426)
                      +.+++++
T Consensus       426 ~v~~~~~  432 (433)
T 3bws_A          426 RVYRRDG  432 (433)
T ss_dssp             EEEEETT
T ss_pred             EEEEecC
Confidence            9998753

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=97.23  E-value=0.0033  Score=64.61  Aligned_cols=75  Identities=7%  Similarity=-0.093  Sum_probs=52.7

Q ss_pred             CCceEEEEcCCCc-EEEEEC---------CCCeEEEEeCCCCcccccEEE-ecCCCCcccccCCcccccccCCcceEEEc
Q 014345           21 IEPYSVEVLPGGE-LLILDS---------ANSNLYRISSSLSLYSRPKLV-AGSAEGYSGHVDGKPREARMNHPKGLTVD   89 (426)
Q Consensus        21 ~~P~GIaVd~dG~-LYVaD~---------~n~rI~kid~dg~~~g~v~~v-aG~~~G~~G~~dG~a~~A~Ln~P~GIaVd   89 (426)
                      ..| +|++++||. |||++.         ..+.|.+||.....  .+..+ .+.. ..         ......|.+++++
T Consensus       119 ~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~--vv~~I~v~g~-~r---------~~~g~~P~~~~~s  185 (426)
T 3c75_H          119 FLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFL--PIADIELPDA-PR---------FLVGTYQWMNALT  185 (426)
T ss_dssp             SSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC--EEEEEEETTC-CC---------CCBSCCGGGSEEC
T ss_pred             CCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCc--EEEEEECCCc-cc---------cccCCCcceEEEc
Confidence            469 999999987 999986         35679999987532  12222 2210 00         0012469999999


Q ss_pred             CCCC-EEEEECC-CCEEEEEc
Q 014345           90 DRGN-IYIADTM-NMAIRKIS  108 (426)
Q Consensus        90 ~dG~-LYVADt~-N~rIrk~d  108 (426)
                      +||+ |||++.. .+.|.+||
T Consensus       186 pDGk~lyV~n~~~~~~VsVID  206 (426)
T 3c75_H          186 PDNKNLLFYQFSPAPAVGVVD  206 (426)
T ss_dssp             TTSSEEEEEECSSSCEEEEEE
T ss_pred             CCCCEEEEEecCCCCeEEEEE
Confidence            9985 9999975 78999999

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=97.22  E-value=0.0031  Score=64.81  Aligned_cols=110  Identities=14%  Similarity=0.070  Sum_probs=72.7

Q ss_pred             CC-cEEEEECCC----CeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCC-EEEEEC-----
Q 014345           31 GG-ELLILDSAN----SNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIADT-----   99 (426)
Q Consensus        31 dG-~LYVaD~~n----~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~-LYVADt-----   99 (426)
                      ++ .+||++...    +.|.+||.....  .+..+. .     |           ..| ||++++||+ |||+++     
T Consensus        83 ~~~~vyV~n~~~~~~~~~VsVID~~t~~--vv~~I~-v-----G-----------~~P-gia~SpDgk~lyVan~~~~~~  142 (426)
T 3c75_H           83 DARRVYIQDPAHFAAITQQFVIDGSTGR--ILGMTD-G-----G-----------FLP-HPVAAEDGSFFAQASTVFERI  142 (426)
T ss_dssp             CTTEEEEEECTTTCSSEEEEEEETTTTE--EEEEEE-E-----C-----------SSC-EEEECTTSSCEEEEEEEEEET
T ss_pred             CCCEEEEECCCcCCCCCeEEEEECCCCE--EEEEEE-C-----C-----------CCC-ceEECCCCCEEEEEecccccc
Confidence            55 499999854    799999987421  111121 0     1           148 999999986 999996     


Q ss_pred             ----CCCEEEEEc--CCC-cEEEe-CCccCCCCCCCCCCcccccCCCCCeeEEECCCC-eEEEEECC-CCeEEEEEcCCC
Q 014345          100 ----MNMAIRKIS--DSG-VTTIA-GGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSC-SLLVIDRG-NRAIREIQLHFD  169 (426)
Q Consensus       100 ----~N~rIrk~d--~g~-VstIa-Gg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G-~LYVaDsg-N~rIr~I~l~~~  169 (426)
                          ..+.|.+||  .+. +.+|. ++....           .....|.++++ +++| .|||++.. .+.|.+||+...
T Consensus       143 ~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~-----------~~g~~P~~~~~-spDGk~lyV~n~~~~~~VsVID~~t~  210 (426)
T 3c75_H          143 ARGKRTDYVEVFDPVTFLPIADIELPDAPRF-----------LVGTYQWMNAL-TPDNKNLLFYQFSPAPAVGVVDLEGK  210 (426)
T ss_dssp             TEEEEEEEEEEECTTTCCEEEEEEETTCCCC-----------CBSCCGGGSEE-CTTSSEEEEEECSSSCEEEEEETTTT
T ss_pred             ccCCCCCEEEEEECCCCcEEEEEECCCcccc-----------ccCCCcceEEE-cCCCCEEEEEecCCCCeEEEEECCCC
Confidence                356799999  344 34443 211000           01236899994 6555 89999975 789999999876


Q ss_pred             ceE
Q 014345          170 DCA  172 (426)
Q Consensus       170 ~~~  172 (426)
                      ...
T Consensus       211 kvv  213 (426)
T 3c75_H          211 TFD  213 (426)
T ss_dssp             EEE
T ss_pred             eEE
Confidence            543

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=97.22  E-value=0.0031  Score=64.20  Aligned_cols=113  Identities=16%  Similarity=0.107  Sum_probs=73.4

Q ss_pred             cCCCc-EEEEECC----CCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCC-EEEEECC--
Q 014345           29 LPGGE-LLILDSA----NSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIADTM--  100 (426)
Q Consensus        29 d~dG~-LYVaD~~----n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~-LYVADt~--  100 (426)
                      .|+|+ |||+|..    .++|.+||.....  .+..+. .     |           ..|. |++++||+ +||+++.  
T Consensus        41 ~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~--v~~~I~-v-----G-----------~~P~-va~spDG~~lyVan~~~~  100 (386)
T 3sjl_D           41 APDARRVYVNDPAHFAAVTQQFVIDGEAGR--VIGMID-G-----G-----------FLPN-PVVADDGSFIAHASTVFS  100 (386)
T ss_dssp             CCCTTEEEEEECGGGCSSEEEEEEETTTTE--EEEEEE-E-----C-----------SSCE-EEECTTSSCEEEEEEEEE
T ss_pred             CCCCCEEEEEcCcccCCCCEEEEEECCCCe--EEEEEE-C-----C-----------CCCc-EEECCCCCEEEEEccccc
Confidence            46765 9999986    6799999987421  112221 0     1           1275 99999986 9999852  


Q ss_pred             -------CCEEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCC-eEEEEECC-CCeEEEEEcCC
Q 014345          101 -------NMAIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSC-SLLVIDRG-NRAIREIQLHF  168 (426)
Q Consensus       101 -------N~rIrk~d--~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G-~LYVaDsg-N~rIr~I~l~~  168 (426)
                             .+.|.+||  .+. +.+|.-+...+          ...-..|+++++ +++| .|||++.. .+.|.+|++..
T Consensus       101 r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r----------~~~g~~P~~~a~-spDGk~lyVan~~~~~~VsVID~~t  169 (386)
T 3sjl_D          101 RIARGERTDYVEVFDPVTLLPTADIELPDAPR----------FLVGTYPWMTSL-TPDGKTLLFYQFSPAPAVGVVDLEG  169 (386)
T ss_dssp             ETTEEEEEEEEEEECTTTCCEEEEEEETTCCC----------CCBSCCGGGEEE-CTTSSEEEEEECSSSCEEEEEETTT
T ss_pred             ccccCCCCCEEEEEECCCCeEEEEEECCCccc----------cccCCCCceEEE-cCCCCEEEEEEcCCCCeEEEEECCC
Confidence                   46699999  344 34442110000          001237999995 5555 79999974 78999999987


Q ss_pred             CceE
Q 014345          169 DDCA  172 (426)
Q Consensus       169 ~~~~  172 (426)
                      ....
T Consensus       170 ~~vv  173 (386)
T 3sjl_D          170 KAFK  173 (386)
T ss_dssp             TEEE
T ss_pred             CcEE
Confidence            6553

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=97.15  E-value=0.0093  Score=63.17  Aligned_cols=132  Identities=8%  Similarity=-0.009  Sum_probs=81.9

Q ss_pred             CCCceEEEEcCCCc-EEEEECCCCeEEEEeCC-CCcccccEEE-ecCCCCcccccCCcccccccCCcceEEEc----CCC
Q 014345           20 GIEPYSVEVLPGGE-LLILDSANSNLYRISSS-LSLYSRPKLV-AGSAEGYSGHVDGKPREARMNHPKGLTVD----DRG   92 (426)
Q Consensus        20 ~~~P~GIaVd~dG~-LYVaD~~n~rI~kid~d-g~~~g~v~~v-aG~~~G~~G~~dG~a~~A~Ln~P~GIaVd----~dG   92 (426)
                      +..|+++++++||. |||++ ..+.|.+||.. .+. ..+..+ .|.                  .|.+|+++    ++|
T Consensus       196 g~~p~~v~~SpDGr~lyv~~-~dg~V~viD~~~~t~-~~v~~i~~G~------------------~P~~ia~s~~~~pDG  255 (567)
T 1qks_A          196 GYAVHISRLSASGRYLFVIG-RDGKVNMIDLWMKEP-TTVAEIKIGS------------------EARSIETSKMEGWED  255 (567)
T ss_dssp             SSCEEEEEECTTSCEEEEEE-TTSEEEEEETTSSSC-CEEEEEECCS------------------EEEEEEECCSTTCTT
T ss_pred             CCCccceEECCCCCEEEEEc-CCCeEEEEECCCCCC-cEeEEEecCC------------------CCceeEEccccCCCC
Confidence            34699999999997 78887 46799999984 111 112222 111                  38999999    588


Q ss_pred             C-EEEEECCCCEEEEEcC--CC-cEEEeCCccCCCC-----C---------CC----------CCCcccc----------
Q 014345           93 N-IYIADTMNMAIRKISD--SG-VTTIAGGKWGRGG-----G---------HV----------DGPSEDA----------  134 (426)
Q Consensus        93 ~-LYVADt~N~rIrk~d~--g~-VstIaGg~~g~~~-----G---------~~----------dG~~~~a----------  134 (426)
                      + +||++...+.|.++|.  .. +.++.-+......     .         ..          .|.....          
T Consensus       256 k~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v  335 (567)
T 1qks_A          256 KYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKT  335 (567)
T ss_dssp             TEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEE
T ss_pred             CEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCcccee
Confidence            5 9999999999999993  33 3344321110000     0         00          0000000          


Q ss_pred             ----cCCCCCeeEEECCCC-eEEEEECCCCeEEEEEcCCCceE
Q 014345          135 ----KFSNDFDVVYIGSSC-SLLVIDRGNRAIREIQLHFDDCA  172 (426)
Q Consensus       135 ----~f~~P~gIa~vd~~G-~LYVaDsgN~rIr~I~l~~~~~~  172 (426)
                          .=..|+++. ++++| .+||++...+.|.+|+.......
T Consensus       336 ~~i~~~~~~~d~~-~~pdgr~~~va~~~sn~V~ViD~~t~kl~  377 (567)
T 1qks_A          336 TEISAERFLHDGG-LDGSHRYFITAANARNKLVVIDTKEGKLV  377 (567)
T ss_dssp             EEEECCSSEEEEE-ECTTSCEEEEEEGGGTEEEEEETTTTEEE
T ss_pred             eeeeccccccCce-ECCCCCEEEEEeCCCCeEEEEECCCCcEE
Confidence                012466777 46666 58899999999999999876543

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=97.13  E-value=0.018  Score=57.25  Aligned_cols=47  Identities=13%  Similarity=0.089  Sum_probs=33.7

Q ss_pred             CCCeeEEECCCCe--EEEEECCCCeEEEEEcCCCceEee-c-CCCCcceEEE
Q 014345          138 NDFDVVYIGSSCS--LLVIDRGNRAIREIQLHFDDCAYQ-Y-GSSFPLGIAV  185 (426)
Q Consensus       138 ~P~gIa~vd~~G~--LYVaDsgN~rIr~I~l~~~~~~~~-~-~~g~P~GIAv  185 (426)
                      .|++|+ ++++|.  ||++..+.+.|.+|+......... . -...|.+|.+
T Consensus       319 ~p~~i~-~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i~~vG~~P~~~~~  369 (373)
T 2mad_H          319 DVDAIS-VAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSV  369 (373)
T ss_pred             CcCeEE-ECCCCCeEEEEEcCCCCeEEEEECCCCCEEeeecCCCCCCcEEEE
Confidence            589999 567765  788887889999999987665433 2 2335776665

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=97.05  E-value=0.013  Score=57.46  Aligned_cols=46  Identities=9%  Similarity=0.081  Sum_probs=32.4

Q ss_pred             CCeeEEECCCCeEEEEECCCCeEEEEEcCCC--ceEee-cC-CCCcceEEEE
Q 014345          139 DFDVVYIGSSCSLLVIDRGNRAIREIQLHFD--DCAYQ-YG-SSFPLGIAVL  186 (426)
Q Consensus       139 P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~--~~~~~-~~-~g~P~GIAv~  186 (426)
                      |++|++..+...||+++.  +.|.+|+....  .+... .. ...|.+|++.
T Consensus       307 p~~ia~spdg~~l~v~n~--~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~  356 (361)
T 2oiz_A          307 ALSMTIDQQRNLMLTLDG--GNVNVYDISQPEPKLLRTIEGAAEASLQVQFH  356 (361)
T ss_dssp             CCEEEEETTTTEEEEECS--SCEEEEECSSSSCEEEEEETTSCSSEEEEEEC
T ss_pred             eeEEEECCCCCEEEEeCC--CeEEEEECCCCcceeeEEeccCCCCcEEEEec
Confidence            899996544447888885  89999998876  55433 23 3458888775

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=97.04  E-value=0.011  Score=61.79  Aligned_cols=127  Identities=12%  Similarity=0.040  Sum_probs=84.3

Q ss_pred             CCceEEEEcC----CCc-EEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCC-CE
Q 014345           21 IEPYSVEVLP----GGE-LLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRG-NI   94 (426)
Q Consensus        21 ~~P~GIaVd~----dG~-LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG-~L   94 (426)
                      ..|++|++++    ||. |||+....+.|..+|.....  .+.++...  +..+  ++... ..-..+.+|++++++ .+
T Consensus       222 ~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~--~~~~i~~~--g~~~--~~~~~-~~~~~v~~i~~s~~~~~~  294 (543)
T 1nir_A          222 IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE--PKQIVSTR--GMTV--DTQTY-HPEPRVAAIIASHEHPEF  294 (543)
T ss_dssp             SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCC--EEEEEECC--EECS--SSCCE-ESCCCEEEEEECSSSSEE
T ss_pred             CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccc--cceeeccc--Cccc--Ccccc-ccCCceEEEEECCCCCEE
Confidence            4699999999    987 88988878899999876421  22333221  1100  11000 001246789999865 58


Q ss_pred             EEEECCCCEEEEEc--CCC-c--EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCe-EEEEECCCCeEEEEEcCC
Q 014345           95 YIADTMNMAIRKIS--DSG-V--TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCS-LLVIDRGNRAIREIQLHF  168 (426)
Q Consensus        95 YVADt~N~rIrk~d--~g~-V--stIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~-LYVaDsgN~rIr~I~l~~  168 (426)
                      ||+....+.|+.++  +.. +  .++..   +               ..|++++ ++++|. ||++....+.|.+++...
T Consensus       295 ~vs~~~~g~i~vvd~~~~~~l~~~~i~~---~---------------~~~~~~~-~spdg~~l~va~~~~~~v~v~D~~t  355 (543)
T 1nir_A          295 IVNVKETGKVLLVNYKDIDNLTVTSIGA---A---------------PFLHDGG-WDSSHRYFMTAANNSNKVAVIDSKD  355 (543)
T ss_dssp             EEEETTTTEEEEEECTTSSSCEEEEEEC---C---------------SSCCCEE-ECTTSCEEEEEEGGGTEEEEEETTT
T ss_pred             EEEECCCCeEEEEEecCCCcceeEEecc---C---------------cCccCce-ECCCCCEEEEEecCCCeEEEEECCC
Confidence            88888899999999  322 2  23321   0               2588888 577775 889998889999999987


Q ss_pred             CceEe
Q 014345          169 DDCAY  173 (426)
Q Consensus       169 ~~~~~  173 (426)
                      ..+..
T Consensus       356 g~l~~  360 (543)
T 1nir_A          356 RRLSA  360 (543)
T ss_dssp             TEEEE
T ss_pred             CeEEE
Confidence            76653

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=96.86  E-value=0.00061  Score=73.04  Aligned_cols=114  Identities=14%  Similarity=0.190  Sum_probs=74.8

Q ss_pred             CCceEEEEcCCCc-EEEEECCCCeEEEEeCCCCc---ccc----cEEEecCCCCcccccCCcccccccCCcceEEEcCCC
Q 014345           21 IEPYSVEVLPGGE-LLILDSANSNLYRISSSLSL---YSR----PKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRG   92 (426)
Q Consensus        21 ~~P~GIaVd~dG~-LYVaD~~n~rI~kid~dg~~---~g~----v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG   92 (426)
                      ..|+|+.++|||. +||++...++|.+|+.+...   .++    -..++ ..  .-|           ..|.+++++++|
T Consensus       277 ~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~-~v--~vG-----------~gP~h~aF~~dG  342 (595)
T 1fwx_A          277 NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVA-EP--ELG-----------LGPLHTAFDGRG  342 (595)
T ss_dssp             SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEE-CC--BCC-----------SCEEEEEECTTS
T ss_pred             CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEE-Ec--CCC-----------CCcceEEECCCC
Confidence            3799999999998 99999999999999887210   000    00111 10  001           249999999999


Q ss_pred             CEEEEECCCCEEEEEc-CC-----------C-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCC-eEEEEECCC
Q 014345           93 NIYIADTMNMAIRKIS-DS-----------G-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSC-SLLVIDRGN  158 (426)
Q Consensus        93 ~LYVADt~N~rIrk~d-~g-----------~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G-~LYVaDsgN  158 (426)
                      ++|++-...+.|.+++ +.           . +.++.-+       +..|     ......+++ ..++| .||+++.+.
T Consensus       343 ~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~-------yqpG-----h~~~~~g~t-~~~DGk~l~~~Nk~s  409 (595)
T 1fwx_A          343 NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVH-------YQPG-----HLKTVMGET-LDATNDWLVCLSKFS  409 (595)
T ss_dssp             EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECS-------SCEE-----EEEETTTTS-TTCCSSEEEEEESCC
T ss_pred             eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecc-------cccc-----cceeccceE-eCCCCCEEEEcCCCC
Confidence            9999999999999999 32           1 2333221       1111     122334555 45556 799999877


Q ss_pred             -CeE
Q 014345          159 -RAI  161 (426)
Q Consensus       159 -~rI  161 (426)
                       .|+
T Consensus       410 kdr~  413 (595)
T 1fwx_A          410 KDRF  413 (595)
T ss_dssp             TTSS
T ss_pred             cccc
Confidence             776

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=96.81  E-value=0.0056  Score=61.57  Aligned_cols=114  Identities=6%  Similarity=-0.104  Sum_probs=71.6

Q ss_pred             CCceEEEEcCCCc-EEEEEC---------CCCeEEEEeCCCCcccccEEE-ecCCCCcccccCCcccccccCCcceEEEc
Q 014345           21 IEPYSVEVLPGGE-LLILDS---------ANSNLYRISSSLSLYSRPKLV-AGSAEGYSGHVDGKPREARMNHPKGLTVD   89 (426)
Q Consensus        21 ~~P~GIaVd~dG~-LYVaD~---------~n~rI~kid~dg~~~g~v~~v-aG~~~G~~G~~dG~a~~A~Ln~P~GIaVd   89 (426)
                      ..| ++++++||. |||++.         ..+.|.+||.....  .+..+ +|....          ......|.+|+++
T Consensus        66 ~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~--vv~~I~v~~~~~----------~~~g~~P~~ia~S  132 (368)
T 1mda_H           66 FLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFL--PIADIELPDAPR----------FSVGPRVHIIGNC  132 (368)
T ss_dssp             TTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCC--EEEEEEETTSCS----------CCBSCCTTSEEEC
T ss_pred             CCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCC--EEEEEECCCccc----------cccCCCcceEEEc
Confidence            359 999999985 999984         35789999998532  22332 221100          0012469999999


Q ss_pred             CCC-CEEEEECC-CCEEEE--EcCCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEE
Q 014345           90 DRG-NIYIADTM-NMAIRK--ISDSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQ  165 (426)
Q Consensus        90 ~dG-~LYVADt~-N~rIrk--~d~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~  165 (426)
                      +|| .+||++.. .+.|.+  +|...+.++.-+      +         +    ..+  ......+|++.+.++++..++
T Consensus       133 pDGk~lyVan~~~~~~v~V~~iD~~tv~~i~v~------~---------~----~~~--~p~g~~~~~~~~~dg~~~~vd  191 (368)
T 1mda_H          133 ASSACLLFFLFGSSAAAGLSVPGASDDQLTKSA------S---------C----FHI--HPGAAATHYLGSCPASLAASD  191 (368)
T ss_dssp             TTSSCEEEEECSSSCEEEEEETTTEEEEEEECS------S---------C----CCC--EEEETTEEECCCCTTSCEEEE
T ss_pred             CCCCEEEEEccCCCCeEEEEEEchhhceEEECC------C---------c----eEE--ccCCCeEEEEEcCCCCEEEEE
Confidence            998 49999975 677888  883335555321      0         0    011  223345677777777777777


Q ss_pred             cCC
Q 014345          166 LHF  168 (426)
Q Consensus       166 l~~  168 (426)
                      ...
T Consensus       192 ~~~  194 (368)
T 1mda_H          192 LAA  194 (368)
T ss_dssp             CCS
T ss_pred             Ccc
Confidence            654

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=96.73  E-value=0.076  Score=48.88  Aligned_cols=125  Identities=11%  Similarity=0.021  Sum_probs=75.6

Q ss_pred             cEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCC-EEEEECCCCEEEEEc--C
Q 014345           33 ELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIADTMNMAIRKIS--D  109 (426)
Q Consensus        33 ~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~-LYVADt~N~rIrk~d--~  109 (426)
                      +++|+....+.|..++...   ++.......+        +     ....|.+++++++|+ +|+++..++.|.+++  .
T Consensus         2 ~~~v~~~~~~~v~~~d~~~---~~~~~~~~~~--------~-----~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~   65 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEK---MAVDKVITIA--------D-----AGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVT   65 (337)
T ss_dssp             EEEEEEETTTEEEEEETTT---TEEEEEEECT--------T-----CTTCCCCEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             cEEEEcCCCCeEEEEECCC---CcEEEEEEcC--------C-----CCCCccceEEcCCCCEEEEEeCCCCeEEEEECCC
Confidence            4666666777888887763   2222111110        0     001388999999984 899999889999999  3


Q ss_pred             CCc-EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCC-eEEEEEC-----------CCCeEEEEEcCCCceEe-ec
Q 014345          110 SGV-TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSC-SLLVIDR-----------GNRAIREIQLHFDDCAY-QY  175 (426)
Q Consensus       110 g~V-stIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G-~LYVaDs-----------gN~rIr~I~l~~~~~~~-~~  175 (426)
                      +.+ .++..+..+            ..-..|.+++ ++++| .||+++.           .++.|.++++....... ..
T Consensus        66 ~~~~~~~~~~~~~------------~~~~~~~~~~-~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~  132 (337)
T 1pby_B           66 GETLGRIDLSTPE------------ERVKSLFGAA-LSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE  132 (337)
T ss_dssp             CCEEEEEECCBTT------------EEEECTTCEE-ECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE
T ss_pred             CCeEeeEEcCCcc------------cccccccceE-ECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEe
Confidence            443 333321100            0012477888 56666 7899862           35899999987655432 22


Q ss_pred             CCCCcceEEEE
Q 014345          176 GSSFPLGIAVL  186 (426)
Q Consensus       176 ~~g~P~GIAv~  186 (426)
                      ....|.++++.
T Consensus       133 ~~~~~~~~~~s  143 (337)
T 1pby_B          133 APRQITMLAWA  143 (337)
T ss_dssp             CCSSCCCEEEC
T ss_pred             CCCCcceeEEC
Confidence            23346677755

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=96.70  E-value=0.022  Score=57.92  Aligned_cols=82  Identities=9%  Similarity=-0.003  Sum_probs=55.0

Q ss_pred             CCceEEEEcCCCc-EEEEEC---------CCCeEEEEeCCCCcccccEEE-ecCCCCcccccCCcccccccCCcceEEEc
Q 014345           21 IEPYSVEVLPGGE-LLILDS---------ANSNLYRISSSLSLYSRPKLV-AGSAEGYSGHVDGKPREARMNHPKGLTVD   89 (426)
Q Consensus        21 ~~P~GIaVd~dG~-LYVaD~---------~n~rI~kid~dg~~~g~v~~v-aG~~~G~~G~~dG~a~~A~Ln~P~GIaVd   89 (426)
                      ..|+ |++++||. |||++.         ..+.|.+||..+..  .+..+ .+.  |...        ..-..|.+++++
T Consensus        79 ~~P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~--v~~~I~v~~--g~r~--------~~g~~P~~~a~s  145 (386)
T 3sjl_D           79 FLPN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLL--PTADIELPD--APRF--------LVGTYPWMTSLT  145 (386)
T ss_dssp             SSCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC--EEEEEEETT--CCCC--------CBSCCGGGEEEC
T ss_pred             CCCc-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCe--EEEEEECCC--cccc--------ccCCCCceEEEc
Confidence            4586 99999997 999984         24679999987532  12222 221  0000        012369999999


Q ss_pred             CCCC-EEEEECC-CCEEEEEc--CCC-cEEE
Q 014345           90 DRGN-IYIADTM-NMAIRKIS--DSG-VTTI  115 (426)
Q Consensus        90 ~dG~-LYVADt~-N~rIrk~d--~g~-VstI  115 (426)
                      +||+ |||++.. .+.|.+||  .+. +.+|
T Consensus       146 pDGk~lyVan~~~~~~VsVID~~t~~vv~tI  176 (386)
T 3sjl_D          146 PDGKTLLFYQFSPAPAVGVVDLEGKAFKRML  176 (386)
T ss_dssp             TTSSEEEEEECSSSCEEEEEETTTTEEEEEE
T ss_pred             CCCCEEEEEEcCCCCeEEEEECCCCcEEEEE
Confidence            9987 9999974 78999999  444 3455

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=96.60  E-value=0.016  Score=58.26  Aligned_cols=105  Identities=12%  Similarity=-0.078  Sum_probs=69.7

Q ss_pred             CcEEEEECCCC----eEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCC-CEEEEEC-------
Q 014345           32 GELLILDSANS----NLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRG-NIYIADT-------   99 (426)
Q Consensus        32 G~LYVaD~~n~----rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG-~LYVADt-------   99 (426)
                      ..+||++...+    +|..||.+...  .+..+.-      |           ..| +|++++|| .+||+++       
T Consensus        32 ~~~yV~~~~~~~~~d~vsvID~~t~~--v~~~i~v------G-----------~~P-~i~~spDg~~lyVan~~~~r~~~   91 (368)
T 1mda_H           32 RRSHITLPAYFAGTTENWVSCAGCGV--TLGHSLG------A-----------FLS-LAVAGHSGSDFALASTSFARSAK   91 (368)
T ss_dssp             TEEEEEECTTTCSSEEEEEEETTTTE--EEEEEEE------C-----------TTC-EEEECTTSSCEEEEEEEETTTTS
T ss_pred             CeEEEECCccCCccceEEEEECCCCe--EEEEEeC------C-----------CCC-ceEECCCCCEEEEEccccccccc
Confidence            56999998877    88899987532  1222210      1           138 99999997 5999984       


Q ss_pred             --CCCEEEEEc--CCC-cEEEe-CCccCCCCCCCCCCcccccCCCCCeeEEECCCC-eEEEEECC-CCeEEE--EEcCC
Q 014345          100 --MNMAIRKIS--DSG-VTTIA-GGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSC-SLLVIDRG-NRAIRE--IQLHF  168 (426)
Q Consensus       100 --~N~rIrk~d--~g~-VstIa-Gg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G-~LYVaDsg-N~rIr~--I~l~~  168 (426)
                        ..+.|.+||  .+. +.+|. ++.. +          ......|.++++ +++| .|||++.. .+.|.+  ||+..
T Consensus        92 G~~~~~VsviD~~T~~vv~~I~v~~~~-~----------~~~g~~P~~ia~-SpDGk~lyVan~~~~~~v~V~~iD~~t  158 (368)
T 1mda_H           92 GKRTDYVEVFDPVTFLPIADIELPDAP-R----------FSVGPRVHIIGN-CASSACLLFFLFGSSAAAGLSVPGASD  158 (368)
T ss_dssp             SSEEEEEEEECTTTCCEEEEEEETTSC-S----------CCBSCCTTSEEE-CTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred             CCCCCEEEEEECCCCCEEEEEECCCcc-c----------cccCCCcceEEE-cCCCCEEEEEccCCCCeEEEEEEchhh
Confidence              367899999  444 45553 2110 0          001246999995 6655 89999975 678888  77654

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=96.50  E-value=0.065  Score=55.76  Aligned_cols=155  Identities=11%  Similarity=0.069  Sum_probs=84.7

Q ss_pred             ecCCcEEEEEecCCCCCCCceEEEE--cCCCc-EEEEEC-----CCCeEEEEeCCCCcccccEEEecCCCCcccccCCcc
Q 014345            4 FESGYTVETVFDGSKLGIEPYSVEV--LPGGE-LLILDS-----ANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKP   75 (426)
Q Consensus         4 ~~~G~tv~tv~~g~~l~~~P~GIaV--d~dG~-LYVaD~-----~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a   75 (426)
                      +..+..+.++..+.. +..|..|.+  +++|. +||+..     .++.|.++..+.+...... ++.....   ...+..
T Consensus       235 ~~~~k~~~tI~vg~~-g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~-vIdi~~~---~v~~~l  309 (462)
T 2ece_A          235 LRKRKRIHSLTLGEE-NRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEK-VIEIPAE---PLEGNL  309 (462)
T ss_dssp             TTTTEEEEEEESCTT-EEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEE-EEEECCE---ECCSSC
T ss_pred             CCCCcEeeEEecCCC-CCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEE-EEeCCCc---cccccc
Confidence            344544444444322 346888877  88886 888887     7788887665532111111 1111100   000000


Q ss_pred             c------ccccCCcceEEEcCCCC-EEEEECCCCEEEEEc-C-CC-cE---EEe-CCccCCCCCCCCCCcccccCCCCCe
Q 014345           76 R------EARMNHPKGLTVDDRGN-IYIADTMNMAIRKIS-D-SG-VT---TIA-GGKWGRGGGHVDGPSEDAKFSNDFD  141 (426)
Q Consensus        76 ~------~A~Ln~P~GIaVd~dG~-LYVADt~N~rIrk~d-~-g~-Vs---tIa-Gg~~g~~~G~~dG~~~~a~f~~P~g  141 (426)
                      .      .+.-+.|.+|.+++||+ |||++.+.+.|.+++ . .. ..   .+. ||.... .....|   ..--..|.+
T Consensus       310 p~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~-~~~~~G---~~~~ggPr~  385 (462)
T 2ece_A          310 PEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHR-ADHPAG---HKLTGAPQM  385 (462)
T ss_dssp             CGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTC-BCCTTS---CCCCSCCCC
T ss_pred             cccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeecc-cccccc---ccCCCCCCE
Confidence            0      00024699999999986 999999999999998 2 22 22   222 111000 000001   001136999


Q ss_pred             eEEECCCC-eEEEEE--------C-----CCCeEEEEEcCC
Q 014345          142 VVYIGSSC-SLLVID--------R-----GNRAIREIQLHF  168 (426)
Q Consensus       142 Ia~vd~~G-~LYVaD--------s-----gN~rIr~I~l~~  168 (426)
                      ++ ++++| .|||++        .     .+..+.+++.+.
T Consensus       386 ~~-lSpDGk~LyVaNsl~~~wd~Qfyp~~~~~~~~~~~vd~  425 (462)
T 2ece_A          386 LE-ISRDGRRVYVTNSLYSTWDNQFYPEGLKGWMVKLNANP  425 (462)
T ss_dssp             EE-ECTTSSEEEEECCCCHHHHHHHSTTCCCCEEEEEEECT
T ss_pred             EE-EcCCCCEEEEEcCCcccccccccCCCCceEEEEEEecC
Confidence            99 56656 799999        3     566777665553

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.48  E-value=0.024  Score=54.07  Aligned_cols=107  Identities=20%  Similarity=0.212  Sum_probs=69.3

Q ss_pred             CceEEEEcCCCcEEEEECCCCeEEEEeCCCC----cccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEE
Q 014345           22 EPYSVEVLPGGELLILDSANSNLYRISSSLS----LYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIA   97 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~----~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVA   97 (426)
                      ....||++|+|.||++  .++.++++++..+    +.+. .+.+|.. |..++             ..|.+|++|.||++
T Consensus        42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s-~t~IG~~-Gw~~F-------------~a~~fD~~G~LYav  104 (236)
T 1tl2_A           42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGR-AKKIGNG-GWNQF-------------QFLFFDPNGYLYAV  104 (236)
T ss_dssp             TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHH-CEEEECS-CGGGC-------------SEEEECTTSCEEEE
T ss_pred             cceeEEECCCccEEEE--eCCeEEEECCCCCCccccccc-ccEeccc-ccccc-------------eEEEECCCCCEEEe
Confidence            5679999999999999  5778999988531    1122 3444442 22221             56999999999999


Q ss_pred             ECCCCEEEEEcC--CC---c---EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEE
Q 014345           98 DTMNMAIRKISD--SG---V---TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQ  165 (426)
Q Consensus        98 Dt~N~rIrk~d~--g~---V---stIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~  165 (426)
                        .++.|.+++.  .+   +   .+..|.....            .|   ..|+ .+++|.||-+.  ++++.+-.
T Consensus       105 --~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~------------~~---~~lf-f~p~G~Lyav~--dg~lyr~~  160 (236)
T 1tl2_A          105 --SKDKLYKASPPQSDTDNWIARATEVGSGGWS------------GF---KFLF-FHPNGYLYAVH--GQQFYKAL  160 (236)
T ss_dssp             --ETTEEEEESCCCSTTCCHHHHSEEEECSSGG------------GE---EEEE-ECTTSCEEEEE--TTEEEEEC
T ss_pred             --CCCEEEEeCCCcCCCCceeccccEeccCCCC------------ce---EEEE-ECCCceEEEEe--CCcEEecC
Confidence              3589999982  22   1   1222211000            12   4454 79999999999  55665543

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=96.38  E-value=0.2  Score=50.40  Aligned_cols=161  Identities=12%  Similarity=0.117  Sum_probs=92.8

Q ss_pred             CceEEEEcCC----C----cEEEEECC--CCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEE--c
Q 014345           22 EPYSVEVLPG----G----ELLILDSA--NSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTV--D   89 (426)
Q Consensus        22 ~P~GIaVd~d----G----~LYVaD~~--n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaV--d   89 (426)
                      .+++|.+-++    |    -+|+++..  +++|..|+.+... +.+..+.+..         .+....+..|.|||+  +
T Consensus        69 ~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~-~~l~~i~~~~---------~pv~t~~~~pyGlcly~~  138 (355)
T 3amr_A           69 KLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKN-GTLQSMTDPD---------HPIATAINEVYGFTLYHS  138 (355)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTT-CCEEECSCTT---------SCEECCCSSCCCEEEEEC
T ss_pred             CcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCC-Cceeeccccc---------cCcCCCCCCeeEEEEEec
Confidence            6788888662    2    25888988  8988777443211 2333331110         000123678999999  7


Q ss_pred             CC-CC--EEEEECCCCEEEEEc-----CCCcE-EEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCe
Q 014345           90 DR-GN--IYIADTMNMAIRKIS-----DSGVT-TIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRA  160 (426)
Q Consensus        90 ~d-G~--LYVADt~N~rIrk~d-----~g~Vs-tIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~r  160 (426)
                      +. |.  +||.+.. +++..+.     ++.++ ++... -.  .+           ..|.++++.+..+.|||++... .
T Consensus       139 ~~~g~~yafV~~k~-G~~~q~~l~~~~~g~~~~~lVR~-f~--lg-----------sq~EgcvvDd~~g~Lyv~eEd~-G  202 (355)
T 3amr_A          139 QKTGKYYAMVTGKE-GEFEQYELKADKNGYISGKKVRA-FK--MN-----------SQTEGMAADDEYGRLYIAEEDE-A  202 (355)
T ss_dssp             TTTCCEEEEEECSS-SEEEEEEEEECTTSCEEEEEEEE-EE--CS-----------SCEEEEEEETTTTEEEEEETTT-E
T ss_pred             CCCCcEEEEEECCC-CeEEEEEEEeCCCCcccceEEEE-ec--CC-----------CCcceEEEcCCCCeEEEecccc-e
Confidence            64 54  7788875 7777644     22232 11110 00  00           1466777666789999999975 4


Q ss_pred             EEEEEcCCCc-----eE-eecCC---CCcceEEEEecCCceEEEEEEEecccceeee
Q 014345          161 IREIQLHFDD-----CA-YQYGS---SFPLGIAVLLAAGFFGYMLALLQRRVGTIVS  208 (426)
Q Consensus       161 Ir~I~l~~~~-----~~-~~~~~---g~P~GIAv~~g~g~~Gy~~a~lq~~~g~~~~  208 (426)
                      |++|+.+...     .. .....   .-+.||++..+..--||.++.-|..-...+.
T Consensus       203 Iw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vy  259 (355)
T 3amr_A          203 IWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIY  259 (355)
T ss_dssp             EEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEE
T ss_pred             EEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEE
Confidence            9999966322     11 11112   2478899876654567888777665444444

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=96.33  E-value=0.042  Score=53.72  Aligned_cols=74  Identities=11%  Similarity=0.109  Sum_probs=50.5

Q ss_pred             CCceEEEEcCCCc-EEEEEC---------CCCeEEEEeCCCCcccccEEEe-cCCCCcccccCCcccccccCCcceEEEc
Q 014345           21 IEPYSVEVLPGGE-LLILDS---------ANSNLYRISSSLSLYSRPKLVA-GSAEGYSGHVDGKPREARMNHPKGLTVD   89 (426)
Q Consensus        21 ~~P~GIaVd~dG~-LYVaD~---------~n~rI~kid~dg~~~g~v~~va-G~~~G~~G~~dG~a~~A~Ln~P~GIaVd   89 (426)
                      ..| +|++++||. |||++.         ..+.|..||.....  .+..+. +.. ..          ..-..|.+|+++
T Consensus        51 ~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~--~~~~i~~~~~-~~----------~~g~~p~~i~~s  116 (361)
T 2oiz_A           51 FNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLT--FEKEISLPPK-RV----------QGLNYDGLFRQT  116 (361)
T ss_dssp             EEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCC--EEEEEEECTT-BC----------CBCCCGGGEEEC
T ss_pred             CCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCc--EEEEEEcCcc-cc----------ccCCCcceEEEC
Confidence            368 999999986 899974         23569999876321  122221 110 00          012469999999


Q ss_pred             CCCC-EEEEECC-CCEEEEEc
Q 014345           90 DRGN-IYIADTM-NMAIRKIS  108 (426)
Q Consensus        90 ~dG~-LYVADt~-N~rIrk~d  108 (426)
                      ++|+ |||++.. .+.|.+||
T Consensus       117 pdg~~l~v~n~~~~~~v~v~d  137 (361)
T 2oiz_A          117 TDGKFIVLQNASPATSIGIVD  137 (361)
T ss_dssp             TTSSEEEEEEESSSEEEEEEE
T ss_pred             CCCCEEEEECCCCCCeEEEEE
Confidence            9986 9999875 68999999

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=96.29  E-value=0.24  Score=45.31  Aligned_cols=114  Identities=6%  Similarity=-0.005  Sum_probs=75.2

Q ss_pred             CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCC
Q 014345           22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN  101 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N  101 (426)
                      ...+++++++|+++++-..++.|..++....   +.......                -.....++++++|.++++-..+
T Consensus       185 ~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~---~~~~~~~~----------------~~~v~~~~~s~~~~~l~~~~~~  245 (337)
T 1gxr_A          185 GASCIDISNDGTKLWTGGLDNTVRSWDLREG---RQLQQHDF----------------TSQIFSLGYCPTGEWLAVGMES  245 (337)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTTT---EEEEEEEC----------------SSCEEEEEECTTSSEEEEEETT
T ss_pred             ceEEEEECCCCCEEEEEecCCcEEEEECCCC---ceEeeecC----------------CCceEEEEECCCCCEEEEEcCC
Confidence            5778899988887777667888988887642   22222111                1125679999999877777778


Q ss_pred             CEEEEEc-C-CCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceE
Q 014345          102 MAIRKIS-D-SGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCA  172 (426)
Q Consensus       102 ~rIrk~d-~-g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~~  172 (426)
                      +.|+.++ . +....+.+.                 -.....++ +.+++.++++-..++.|+.+++......
T Consensus       246 ~~i~~~~~~~~~~~~~~~~-----------------~~~v~~~~-~~~~~~~l~~~~~dg~i~~~~~~~~~~~  300 (337)
T 1gxr_A          246 SNVEVLHVNKPDKYQLHLH-----------------ESCVLSLK-FAYCGKWFVSTGKDNLLNAWRTPYGASI  300 (337)
T ss_dssp             SCEEEEETTSSCEEEECCC-----------------SSCEEEEE-ECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred             CcEEEEECCCCCeEEEcCC-----------------ccceeEEE-ECCCCCEEEEecCCCcEEEEECCCCeEE
Confidence            8899998 3 333333221                 11345676 5677777777767889999998765544

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=96.22  E-value=0.02  Score=61.18  Aligned_cols=122  Identities=17%  Similarity=0.154  Sum_probs=73.9

Q ss_pred             cccCCcceEEEcC-CCCEEEEECCC---------------------CEEEEEc-CCC--------cE--EEeCCccCCCC
Q 014345           78 ARMNHPKGLTVDD-RGNIYIADTMN---------------------MAIRKIS-DSG--------VT--TIAGGKWGRGG  124 (426)
Q Consensus        78 A~Ln~P~GIaVd~-dG~LYVADt~N---------------------~rIrk~d-~g~--------Vs--tIaGg~~g~~~  124 (426)
                      ..|..|.+|++++ +|.||||=+.|                     +.|.++. +++        ..  .++|.......
T Consensus       381 T~mdRpEdi~v~p~~g~vY~alTnn~~rg~~~~~~~~~Npr~~n~~G~I~r~~e~~~d~~a~~f~W~i~l~~G~p~~~~~  460 (592)
T 4a9v_A          381 TRMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAG  460 (592)
T ss_dssp             CCEECEEEEEECTTTCCEEEEECCBTTTTSTTSCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTT
T ss_pred             ccccCccceeEcCCCCEEEEEEeCCCCCCCcCccccCCCCccCCCCCeEEEEeeCCCCcccceeeEEEEEEccCCccccc
Confidence            3578899999998 79999996643                     5677776 221        12  23332211100


Q ss_pred             C---CCCCCcccccCCCCCeeEEECCCCeEEE-EEC-----------CCCeEEEEEcCCCceEeec---CCCCcceEEEE
Q 014345          125 G---HVDGPSEDAKFSNDFDVVYIGSSCSLLV-IDR-----------GNRAIREIQLHFDDCAYQY---GSSFPLGIAVL  186 (426)
Q Consensus       125 G---~~dG~~~~a~f~~P~gIa~vd~~G~LYV-aDs-----------gN~rIr~I~l~~~~~~~~~---~~g~P~GIAv~  186 (426)
                      +   ...+......|+.|.+|+ ++++|+||| +|.           +++.|.++++.........   ....|.|||+.
T Consensus       461 ~~~~g~~~~~~~~~fnsPDnL~-fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafS  539 (592)
T 4a9v_A          461 TPKGGSSNITPQNMFNSPDGLG-FDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFS  539 (592)
T ss_dssp             SGGGCCTTCCTTTCCCCEEEEE-ECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEEC
T ss_pred             ccccCccCccccCccCCCCceE-ECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEEC
Confidence            0   001122344799999999 699999999 885           3568999988654443322   12347888877


Q ss_pred             ecCCceEEEEEEEeccc
Q 014345          187 LAAGFFGYMLALLQRRV  203 (426)
Q Consensus       187 ~g~g~~Gy~~a~lq~~~  203 (426)
                      .-.   -+++...|++-
T Consensus       540 PD~---ktLfV~vQHPG  553 (592)
T 4a9v_A          540 PDQ---KTLFVGIQHPG  553 (592)
T ss_dssp             TTS---SEEEEEEESTT
T ss_pred             CCC---CEEEEEEeCCC
Confidence            332   23455555543

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=96.16  E-value=0.079  Score=56.81  Aligned_cols=72  Identities=8%  Similarity=0.134  Sum_probs=55.7

Q ss_pred             CCcceEEEcCCCC-EEEEECCCCEEEEEcCCCcE------------EEeCCccCCCCCCCCCCcccccCCCCCeeEEECC
Q 014345           81 NHPKGLTVDDRGN-IYIADTMNMAIRKISDSGVT------------TIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGS  147 (426)
Q Consensus        81 n~P~GIaVd~dG~-LYVADt~N~rIrk~d~g~Vs------------tIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~  147 (426)
                      ..|.||.+++||. +||++...++|.+++-....            .++--..|               ..|.+++ +++
T Consensus       277 ~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG---------------~gP~h~a-F~~  340 (595)
T 1fwx_A          277 NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELG---------------LGPLHTA-FDG  340 (595)
T ss_dssp             SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCC---------------SCEEEEE-ECT
T ss_pred             CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCC---------------CCcceEE-ECC
Confidence            4799999999997 99999999999999933221            11111101               3699999 588


Q ss_pred             CCeEEEEECCCCeEEEEEcCC
Q 014345          148 SCSLLVIDRGNRAIREIQLHF  168 (426)
Q Consensus       148 ~G~LYVaDsgN~rIr~I~l~~  168 (426)
                      +|++|++..-.+.|.+++.+.
T Consensus       341 dG~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          341 RGNAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             TSEEEEEETTTTEEEEEEHHH
T ss_pred             CCeEEEEEecCCcEEEEEhhH
Confidence            889999999999999999764

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=96.07  E-value=0.074  Score=49.40  Aligned_cols=68  Identities=15%  Similarity=0.186  Sum_probs=43.7

Q ss_pred             CcceEEEcCCCCEEEEECCCCEEEEEc-CCCcE-EEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCC
Q 014345           82 HPKGLTVDDRGNIYIADTMNMAIRKIS-DSGVT-TIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNR  159 (426)
Q Consensus        82 ~P~GIaVd~dG~LYVADt~N~rIrk~d-~g~Vs-tIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~  159 (426)
                      ....++++++|+|||+.. ++.|..++ ++... .+... .                ..+..++ ++.++.|||+.. ++
T Consensus       216 ~~~~~~~~~~g~l~v~t~-~~gl~~~~~~g~~~~~~~~~-~----------------~~~~~~~-~~~~g~l~v~t~-~g  275 (330)
T 3hxj_A          216 TVTRPAISEDGTIYVTSL-DGHLYAINPDGTEKWRFKTG-K----------------RIESSPV-IGNTDTIYFGSY-DG  275 (330)
T ss_dssp             CCSCCEECTTSCEEEEET-TTEEEEECTTSCEEEEEECS-S----------------CCCSCCE-ECTTSCEEEECT-TC
T ss_pred             ceeceEECCCCeEEEEcC-CCeEEEECCCCCEeEEeeCC-C----------------Cccccce-EcCCCeEEEecC-CC
Confidence            356788999999999976 46788888 44432 22110 0                0122345 577899999875 45


Q ss_pred             eEEEEEcCCC
Q 014345          160 AIREIQLHFD  169 (426)
Q Consensus       160 rIr~I~l~~~  169 (426)
                      .|.+++..+.
T Consensus       276 gl~~~d~~g~  285 (330)
T 3hxj_A          276 HLYAINPDGT  285 (330)
T ss_dssp             EEEEECTTSC
T ss_pred             CEEEECCCCc
Confidence            7888887543

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=96.05  E-value=0.36  Score=45.76  Aligned_cols=116  Identities=12%  Similarity=0.151  Sum_probs=79.0

Q ss_pred             CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCC
Q 014345           22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN  101 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N  101 (426)
                      ....++++++|+++++-...+.|..++.....  .+..+.+.                -.....|+++++|.++++-..+
T Consensus       166 ~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~--~~~~~~~h----------------~~~v~~l~~spd~~~l~s~s~d  227 (321)
T 3ow8_A          166 FILSIAYSPDGKYLASGAIDGIINIFDIATGK--LLHTLEGH----------------AMPIRSLTFSPDSQLLVTASDD  227 (321)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTTE--EEEEECCC----------------SSCCCEEEECTTSCEEEEECTT
T ss_pred             eEEEEEECCCCCEEEEEcCCCeEEEEECCCCc--EEEEEccc----------------CCceeEEEEcCCCCEEEEEcCC
Confidence            45788999999988887788899999886421  12222221                1124679999999988888888


Q ss_pred             CEEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceEe
Q 014345          102 MAIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAY  173 (426)
Q Consensus       102 ~rIrk~d--~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~~~  173 (426)
                      +.|+.++  .+. +.++.+-                 -.....++ +.+++.++++-...+.|+.+++....+..
T Consensus       228 g~i~iwd~~~~~~~~~~~~h-----------------~~~v~~~~-~sp~~~~l~s~s~D~~v~iwd~~~~~~~~  284 (321)
T 3ow8_A          228 GYIKIYDVQHANLAGTLSGH-----------------ASWVLNVA-FCPDDTHFVSSSSDKSVKVWDVGTRTCVH  284 (321)
T ss_dssp             SCEEEEETTTCCEEEEECCC-----------------SSCEEEEE-ECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred             CeEEEEECCCcceeEEEcCC-----------------CCceEEEE-ECCCCCEEEEEeCCCcEEEEeCCCCEEEE
Confidence            8899998  333 3344331                 01235677 46777777777778899999988766543

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=95.92  E-value=0.053  Score=57.35  Aligned_cols=106  Identities=10%  Similarity=-0.066  Sum_probs=73.2

Q ss_pred             EcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCC-EEEEECCCCEEEE
Q 014345           28 VLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIADTMNMAIRK  106 (426)
Q Consensus        28 Vd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~-LYVADt~N~rIrk  106 (426)
                      +|+.+.+||+....+.|..||.++.   ++...+..     |           ..|.++++++||+ +||++. .+.|.+
T Consensus       163 ~d~~~~~~V~~~~~~~V~viD~~t~---~v~~~i~~-----g-----------~~p~~v~~SpDGr~lyv~~~-dg~V~v  222 (567)
T 1qks_A          163 WDLENLFSVTLRDAGQIALIDGSTY---EIKTVLDT-----G-----------YAVHISRLSASGRYLFVIGR-DGKVNM  222 (567)
T ss_dssp             CCGGGEEEEEETTTTEEEEEETTTC---CEEEEEEC-----S-----------SCEEEEEECTTSCEEEEEET-TSEEEE
T ss_pred             cCCCceEEEEeCCCCeEEEEECCCC---eEEEEEeC-----C-----------CCccceEECCCCCEEEEEcC-CCeEEE
Confidence            4455679999999999999998752   22222211     1           1378999999987 899885 578999


Q ss_pred             EcCC--C---cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEEC---CCC-eEEEEECCCCeEEEEEcCCCce
Q 014345          107 ISDS--G---VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIG---SSC-SLLVIDRGNRAIREIQLHFDDC  171 (426)
Q Consensus       107 ~d~g--~---VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd---~~G-~LYVaDsgN~rIr~I~l~~~~~  171 (426)
                      ||..  +   +.++..+                  ..|.+|++..   ++| .|||++...+.|.+|+......
T Consensus       223 iD~~~~t~~~v~~i~~G------------------~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~  278 (567)
T 1qks_A          223 IDLWMKEPTTVAEIKIG------------------SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEP  278 (567)
T ss_dssp             EETTSSSCCEEEEEECC------------------SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCE
T ss_pred             EECCCCCCcEeEEEecC------------------CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcE
Confidence            9942  3   2233211                  1478998531   355 8999999999999999765443

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=95.88  E-value=0.46  Score=45.00  Aligned_cols=114  Identities=9%  Similarity=0.127  Sum_probs=75.5

Q ss_pred             CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCC
Q 014345           22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN  101 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N  101 (426)
                      ....++++++|+++++-...+.|..++.....  ....+.+.                -.....++++++|+++++-..+
T Consensus       124 ~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~--~~~~~~~~----------------~~~v~~~~~spdg~~lasg~~d  185 (321)
T 3ow8_A          124 DAWTLAFSPDSQYLATGTHVGKVNIFGVESGK--KEYSLDTR----------------GKFILSIAYSPDGKYLASGAID  185 (321)
T ss_dssp             CCCCEEECTTSSEEEEECTTSEEEEEETTTCS--EEEEEECS----------------SSCEEEEEECTTSSEEEEEETT
T ss_pred             cEEEEEECCCCCEEEEEcCCCcEEEEEcCCCc--eeEEecCC----------------CceEEEEEECCCCCEEEEEcCC
Confidence            35678888888888887778888888776421  11222111                1124679999999988887778


Q ss_pred             CEEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCce
Q 014345          102 MAIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDC  171 (426)
Q Consensus       102 ~rIrk~d--~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~  171 (426)
                      +.|+.++  .+. +.++.+-.                 .....|+ +.+++.++++-...+.|+.+++....+
T Consensus       186 g~i~iwd~~~~~~~~~~~~h~-----------------~~v~~l~-~spd~~~l~s~s~dg~i~iwd~~~~~~  240 (321)
T 3ow8_A          186 GIINIFDIATGKLLHTLEGHA-----------------MPIRSLT-FSPDSQLLVTASDDGYIKIYDVQHANL  240 (321)
T ss_dssp             SCEEEEETTTTEEEEEECCCS-----------------SCCCEEE-ECTTSCEEEEECTTSCEEEEETTTCCE
T ss_pred             CeEEEEECCCCcEEEEEcccC-----------------CceeEEE-EcCCCCEEEEEcCCCeEEEEECCCcce
Confidence            8999999  333 33443210                 1235677 577888888777788899998876544

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=95.85  E-value=0.25  Score=45.80  Aligned_cols=107  Identities=11%  Similarity=0.039  Sum_probs=63.4

Q ss_pred             CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCC
Q 014345           22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN  101 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N  101 (426)
                      ...+++++++|.|||+.. ++.|++++.++..   +..+. ..               -..+..++++.+|+|||+.. +
T Consensus       216 ~~~~~~~~~~g~l~v~t~-~~gl~~~~~~g~~---~~~~~-~~---------------~~~~~~~~~~~~g~l~v~t~-~  274 (330)
T 3hxj_A          216 TVTRPAISEDGTIYVTSL-DGHLYAINPDGTE---KWRFK-TG---------------KRIESSPVIGNTDTIYFGSY-D  274 (330)
T ss_dssp             CCSCCEECTTSCEEEEET-TTEEEEECTTSCE---EEEEE-CS---------------SCCCSCCEECTTSCEEEECT-T
T ss_pred             ceeceEECCCCeEEEEcC-CCeEEEECCCCCE---eEEee-CC---------------CCccccceEcCCCeEEEecC-C
Confidence            356677787888888764 5577777765421   11111 10               01134578888999999976 4


Q ss_pred             CEEEEEc-CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcC
Q 014345          102 MAIRKIS-DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLH  167 (426)
Q Consensus       102 ~rIrk~d-~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~  167 (426)
                      +.|..++ ++..........                .....++ .+.+|.|||+.. ++.|+.....
T Consensus       275 ggl~~~d~~g~~~~~~~~~~----------------~~~~~~~-~d~~g~l~~gt~-~G~~~~~~~~  323 (330)
T 3hxj_A          275 GHLYAINPDGTEKWNFETGS----------------WIIATPV-IDENGTIYFGTR-NGKFYALFNL  323 (330)
T ss_dssp             CEEEEECTTSCEEEEEECSS----------------CCCSCCE-ECTTCCEEEECT-TSCEEEEEC-
T ss_pred             CCEEEECCCCcEEEEEEcCC----------------ccccceE-EcCCCEEEEEcC-CCeEEEEecc
Confidence            5788898 444322221100                0223455 688999999875 5666666544

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=95.78  E-value=0.19  Score=50.64  Aligned_cols=106  Identities=10%  Similarity=0.195  Sum_probs=73.1

Q ss_pred             CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCC
Q 014345           22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN  101 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N  101 (426)
                      ...+++++++|.++++-..++.|..++.++.   .+..+.|.                -...+.|++.++|.+.++-..+
T Consensus       469 ~v~~~~~spd~~~las~~~d~~i~iw~~~~~---~~~~~~~h----------------~~~v~~l~~s~dg~~l~s~~~d  529 (577)
T 2ymu_A          469 SVRGVAFSPDGQTIASASDDKTVKLWNRNGQ---LLQTLTGH----------------SSSVRGVAFSPDGQTIASASDD  529 (577)
T ss_dssp             CEEEEEECTTSCEEEEEETTSEEEEEETTSC---EEEEEECC----------------SSCEEEEEECTTSSCEEEEETT
T ss_pred             CEEEEEEcCCCCEEEEEeCCCEEEEEcCCCC---EEEEEeCC----------------CCCEEEEEEcCCCCEEEEEECc
Confidence            4678999999998888778889999987642   23334332                1125689999999877776668


Q ss_pred             CEEEEEc-CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEE
Q 014345          102 MAIRKIS-DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREI  164 (426)
Q Consensus       102 ~rIrk~d-~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I  164 (426)
                      +.|+.++ ++. +.++.|-.                 ...++|+ +.++|..+++-..++.|+..
T Consensus       530 g~v~lwd~~~~~~~~~~~h~-----------------~~v~~~~-fs~dg~~l~s~~~D~~i~~W  576 (577)
T 2ymu_A          530 KTVKLWNRNGQLLQTLTGHS-----------------SSVWGVA-FSPDGQTIASASSDKTVKLW  576 (577)
T ss_dssp             SEEEEECTTSCEEEEEECCS-----------------SCEEEEE-ECTTSSCEEEEETTSCEEEE
T ss_pred             CEEEEEeCCCCEEEEEcCCC-----------------CCEEEEE-EcCCCCEEEEEeCCCEEEEe
Confidence            8999999 555 45554410                 1235677 46778777776667777765

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=95.78  E-value=0.066  Score=54.36  Aligned_cols=106  Identities=14%  Similarity=0.251  Sum_probs=72.7

Q ss_pred             CCceEEEEcCC----C-cEEEEECCCCeEEEEeCC----CCcccccEEEecCCCCcccccCCcccccccCCcceEEEc-C
Q 014345           21 IEPYSVEVLPG----G-ELLILDSANSNLYRISSS----LSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVD-D   90 (426)
Q Consensus        21 ~~P~GIaVd~d----G-~LYVaD~~n~rI~kid~d----g~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd-~   90 (426)
                      .+-.|||++++    + .||++-....+++++...    .+....+..+ |.    .|.         .....++++| .
T Consensus       220 ~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~-G~----kg~---------~s~~~~~~~D~~  285 (381)
T 3q6k_A          220 AGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELL-GN----RGK---------YNDAIALAYDPK  285 (381)
T ss_dssp             CCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEE-EE----CCT---------TCCEEEEEECTT
T ss_pred             cCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEe-ee----cCC---------CCCcceEEEeCC
Confidence            36789999986    4 499999888899998532    1111223322 21    110         1123467897 7


Q ss_pred             CCCEEEEECCCCEEEEEc-CC------CcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEEC
Q 014345           91 RGNIYIADTMNMAIRKIS-DS------GVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDR  156 (426)
Q Consensus        91 dG~LYVADt~N~rIrk~d-~g------~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDs  156 (426)
                      +|+||+++..++.|..++ ++      .+.+++-               +..|.+|.++. ++.+|.|||...
T Consensus       286 ~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~---------------d~~l~~pd~~~-i~~~g~Lwv~sn  342 (381)
T 3q6k_A          286 TKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYT---------------SSRFVFGTDIS-VDSKGGLWFMSN  342 (381)
T ss_dssp             TCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEE---------------CTTCCSEEEEE-ECTTSCEEEEEC
T ss_pred             CCeEEEEeccCCeEEEEeCCCCccccCceEEEEE---------------CCCccccCeEE-ECCCCeEEEEEC
Confidence            899999999999999999 44      2355542               22688999998 788999999873

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=95.74  E-value=0.44  Score=47.83  Aligned_cols=111  Identities=9%  Similarity=0.150  Sum_probs=74.9

Q ss_pred             CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCC
Q 014345           22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN  101 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N  101 (426)
                      ...+|++.+|+.++++-..++.|..++.++.   .+..+.+.                -.....|+++++|.++++-..+
T Consensus       428 ~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~---~~~~~~~~----------------~~~v~~~~~spd~~~las~~~d  488 (577)
T 2ymu_A          428 SVWGVAFSPDDQTIASASDDKTVKLWNRNGQ---LLQTLTGH----------------SSSVRGVAFSPDGQTIASASDD  488 (577)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTSC---EEEEEECC----------------SSCEEEEEECTTSCEEEEEETT
T ss_pred             CeEEEEECCCCCEEEEEcCCCEEEEEECCCC---EEEEEcCC----------------CCCEEEEEEcCCCCEEEEEeCC
Confidence            4578899999988777777888888887642   23333332                1124679999999988887778


Q ss_pred             CEEEEEc-CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCC
Q 014345          102 MAIRKIS-DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFD  169 (426)
Q Consensus       102 ~rIrk~d-~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~  169 (426)
                      +.|+.++ ++. +.++.+-.                 .....|+ +.++|.++++-...+.|+.++..+.
T Consensus       489 ~~i~iw~~~~~~~~~~~~h~-----------------~~v~~l~-~s~dg~~l~s~~~dg~v~lwd~~~~  540 (577)
T 2ymu_A          489 KTVKLWNRNGQLLQTLTGHS-----------------SSVRGVA-FSPDGQTIASASDDKTVKLWNRNGQ  540 (577)
T ss_dssp             SEEEEEETTSCEEEEEECCS-----------------SCEEEEE-ECTTSSCEEEEETTSEEEEECTTSC
T ss_pred             CEEEEEcCCCCEEEEEeCCC-----------------CCEEEEE-EcCCCCEEEEEECcCEEEEEeCCCC
Confidence            8999999 555 44554310                 1235666 4667776666666778888876543

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=95.71  E-value=0.13  Score=51.83  Aligned_cols=84  Identities=13%  Similarity=0.156  Sum_probs=55.1

Q ss_pred             EecCCCCCCCceEEEEcC-CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccC-CcceEEEc-
Q 014345           13 VFDGSKLGIEPYSVEVLP-GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMN-HPKGLTVD-   89 (426)
Q Consensus        13 v~~g~~l~~~P~GIaVd~-dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln-~P~GIaVd-   89 (426)
                      +.....++..|.|+++|+ .|.|||++... .|++++.+.........++-.+       .+     .|. .+.||++. 
T Consensus       172 lVR~f~lgsq~EgcvvDd~~g~Lyv~eEd~-GIw~~da~p~~~~~~~~v~~~~-------~g-----~l~aDvEGLai~~  238 (355)
T 3amr_A          172 KVRAFKMNSQTEGMAADDEYGRLYIAEEDE-AIWKFSAEPDGGSNGTVIDRAD-------GR-----HLTRDIEGLTIYY  238 (355)
T ss_dssp             EEEEEECSSCEEEEEEETTTTEEEEEETTT-EEEEEECSTTSCSCCEEEEEBS-------SS-----SBCSCEEEEEEEE
T ss_pred             EEEEecCCCCcceEEEcCCCCeEEEecccc-eEEEEeCCcCCCCCceEEEEec-------CC-----ccccCcceEEEEe
Confidence            333344556899999997 68899999764 5999995522101122222110       00     133 58999995 


Q ss_pred             -CC--CCEEEEECCCCEEEEEcC
Q 014345           90 -DR--GNIYIADTMNMAIRKISD  109 (426)
Q Consensus        90 -~d--G~LYVADt~N~rIrk~d~  109 (426)
                       ++  |.|+|++-+++...+++.
T Consensus       239 ~~~g~gyLivSsQG~~s~~Vydr  261 (355)
T 3amr_A          239 AADGKGYLMASSQGNSSYAIYDR  261 (355)
T ss_dssp             CGGGCEEEEEEEGGGTEEEEEES
T ss_pred             cCCCCEEEEEEcCCCCEEEEEEC
Confidence             33  459999999999999993

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=95.51  E-value=0.41  Score=48.53  Aligned_cols=154  Identities=12%  Similarity=0.072  Sum_probs=93.1

Q ss_pred             CceEEEEc-C-------CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcc---c--ccCCcccccccCCcceEEE
Q 014345           22 EPYSVEVL-P-------GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYS---G--HVDGKPREARMNHPKGLTV   88 (426)
Q Consensus        22 ~P~GIaVd-~-------dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~---G--~~dG~a~~A~Ln~P~GIaV   88 (426)
                      .-.+|+|| .       ++-+||+|.....|+++|...+   +...+.... ...   +  ..+|.... ....-.|||+
T Consensus       153 ~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~---~swRv~~~~-~~pd~~~~~~i~G~~~~-~~~Gi~gIaL  227 (381)
T 3q6k_A          153 YFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQ---DSWNVTHPT-FKAERPTKFDYGGKEYE-FKAGIFGITL  227 (381)
T ss_dssp             GEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTT---EEEEEECGG-GSCCSCEEEEETTEEEE-ECCCEEEEEE
T ss_pred             ccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCC---cEEEEccCC-CccccCcceEECCEEeE-eccCceEEEe
Confidence            46789998 2       3458999999999999998853   333333211 111   0  01222110 1135679999


Q ss_pred             cCC----C-CEEEEECCCCEEEEEc-----CCCc---EEEeCCccCCCCCCCCCCcccccCCCCCeeEEEC-CCCeEEEE
Q 014345           89 DDR----G-NIYIADTMNMAIRKIS-----DSGV---TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIG-SSCSLLVI  154 (426)
Q Consensus        89 d~d----G-~LYVADt~N~rIrk~d-----~g~V---stIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd-~~G~LYVa  154 (426)
                      +++    + .||++-....++..+.     +...   ....|.+.         +     -+.-.+++ .| .+|+||++
T Consensus       228 sp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg---------~-----~s~~~~~~-~D~~~G~ly~~  292 (381)
T 3q6k_A          228 GDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRG---------K-----YNDAIALA-YDPKTKVIFFA  292 (381)
T ss_dssp             CCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECC---------T-----TCCEEEEE-ECTTTCEEEEE
T ss_pred             cCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecC---------C-----CCCcceEE-EeCCCCeEEEE
Confidence            986    3 5999999888888886     2211   11222110         0     00112345 55 79999999


Q ss_pred             ECCCCeEEEEEcCC-C----c---eEeecCCCCcceEEEEecCCceEEEEEEE
Q 014345          155 DRGNRAIREIQLHF-D----D---CAYQYGSSFPLGIAVLLAAGFFGYMLALL  199 (426)
Q Consensus       155 DsgN~rIr~I~l~~-~----~---~~~~~~~g~P~GIAv~~g~g~~Gy~~a~l  199 (426)
                      +..++.|.+++.++ .    .   .......-.|.+++++    -.|++|.+.
T Consensus       293 ~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~----~~g~Lwv~s  341 (381)
T 3q6k_A          293 EANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVD----SKGGLWFMS  341 (381)
T ss_dssp             ESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEEC----TTSCEEEEE
T ss_pred             eccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEEC----CCCeEEEEE
Confidence            99999999999876 1    1   1223344578899886    245666543

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=95.45  E-value=0.46  Score=43.41  Aligned_cols=117  Identities=14%  Similarity=0.062  Sum_probs=72.4

Q ss_pred             CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCC
Q 014345           22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN  101 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N  101 (426)
                      ....++++++|+++++-..++.|..++...........+.+.                -.....+++.++++++++-..+
T Consensus        99 ~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~----------------~~~i~~~~~~~~~~~l~~~~~d  162 (337)
T 1gxr_A           99 YIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSS----------------APACYALAISPDSKVCFSCCSD  162 (337)
T ss_dssp             BEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECS----------------SSCEEEEEECTTSSEEEEEETT
T ss_pred             cEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccC----------------CCceEEEEECCCCCEEEEEeCC
Confidence            467889999998777666778899998874210011112111                1124678999998877766667


Q ss_pred             CEEEEEc-C-CCc-EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceE
Q 014345          102 MAIRKIS-D-SGV-TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCA  172 (426)
Q Consensus       102 ~rIrk~d-~-g~V-stIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~~  172 (426)
                      +.|+.++ . +.. .++.+.                 -.....++ +.+++.++++-..++.|+.+++....+.
T Consensus       163 g~v~~~d~~~~~~~~~~~~~-----------------~~~i~~~~-~~~~~~~l~~~~~dg~i~~~d~~~~~~~  218 (337)
T 1gxr_A          163 GNIAVWDLHNQTLVRQFQGH-----------------TDGASCID-ISNDGTKLWTGGLDNTVRSWDLREGRQL  218 (337)
T ss_dssp             SCEEEEETTTTEEEEEECCC-----------------SSCEEEEE-ECTTSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             CcEEEEeCCCCceeeeeecc-----------------cCceEEEE-ECCCCCEEEEEecCCcEEEEECCCCceE
Confidence            8899998 3 332 333221                 01245666 4666766666556788888888765543

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=95.40  E-value=1.2  Score=41.03  Aligned_cols=128  Identities=16%  Similarity=0.222  Sum_probs=82.8

Q ss_pred             CCcEEEEEecCCCCCCCceEEEEcCCCcEEEEECCCCeEEEEeCCCCccccc-EEEecCCCCcccccCCcccccccCCcc
Q 014345            6 SGYTVETVFDGSKLGIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRP-KLVAGSAEGYSGHVDGKPREARMNHPK   84 (426)
Q Consensus         6 ~G~tv~tv~~g~~l~~~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v-~~vaG~~~G~~G~~dG~a~~A~Ln~P~   84 (426)
                      +.+.....+.+..-  .-.+++++++|+++++-...+.|..++...   +.. ..+.+.                -....
T Consensus        11 ~~~~~~~~~~gh~~--~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~---~~~~~~~~~h----------------~~~v~   69 (312)
T 4ery_A           11 PNYALKFTLAGHTK--AVSSVKFSPNGEWLASSSADKLIKIWGAYD---GKFEKTISGH----------------KLGIS   69 (312)
T ss_dssp             CCCEEEEEECCCSS--CEEEEEECTTSSEEEEEETTSCEEEEETTT---CCEEEEECCC----------------SSCEE
T ss_pred             CCceeEEEEcccCC--cEEEEEECCCCCEEEEeeCCCeEEEEeCCC---cccchhhccC----------------CCceE
Confidence            44455555555442  468999999999888777788898888763   222 222221                11246


Q ss_pred             eEEEcCCCCEEEEECCCCEEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeE
Q 014345           85 GLTVDDRGNIYIADTMNMAIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAI  161 (426)
Q Consensus        85 GIaVd~dG~LYVADt~N~rIrk~d--~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rI  161 (426)
                      .|++.++|+++++-..++.|+.++  .+. +.++.+..                 ..-..++ ..+++.++++-..++.|
T Consensus        70 ~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~-----------------~~v~~~~-~~~~~~~l~s~~~d~~i  131 (312)
T 4ery_A           70 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS-----------------NYVFCCN-FNPQSNLIVSGSFDESV  131 (312)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCS-----------------SCEEEEE-ECSSSSEEEEEETTSCE
T ss_pred             EEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCC-----------------CCEEEEE-EcCCCCEEEEEeCCCcE
Confidence            799999999888877788999998  344 34443311                 0124455 46667777776677888


Q ss_pred             EEEEcCCCceE
Q 014345          162 REIQLHFDDCA  172 (426)
Q Consensus       162 r~I~l~~~~~~  172 (426)
                      +.+++....+.
T Consensus       132 ~iwd~~~~~~~  142 (312)
T 4ery_A          132 RIWDVKTGKCL  142 (312)
T ss_dssp             EEEETTTCCEE
T ss_pred             EEEECCCCEEE
Confidence            88888765543

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=95.30  E-value=0.8  Score=43.36  Aligned_cols=116  Identities=11%  Similarity=0.103  Sum_probs=77.1

Q ss_pred             CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCC
Q 014345           22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN  101 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N  101 (426)
                      ....+++.++|.++++-...+.|..++.....  .+..+.+.                -.....|++.++|+++++-..+
T Consensus       186 ~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~--~~~~~~~h----------------~~~v~~v~~~p~~~~l~s~s~d  247 (340)
T 1got_B          186 DVMSLSLAPDTRLFVSGACDASAKLWDVREGM--CRQTFTGH----------------ESDINAICFFPNGNAFATGSDD  247 (340)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTCS--EEEEECCC----------------SSCEEEEEECTTSSEEEEEETT
T ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEECCCCe--eEEEEcCC----------------cCCEEEEEEcCCCCEEEEEcCC
Confidence            46788999999988888788889999876321  12222221                1125689999999988888888


Q ss_pred             CEEEEEc-CC-C-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCce
Q 014345          102 MAIRKIS-DS-G-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDC  171 (426)
Q Consensus       102 ~rIrk~d-~g-~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~  171 (426)
                      +.|+.+| .. . +.++....               .......++ +.++|.++++-..++.|+.++.....+
T Consensus       248 ~~v~iwd~~~~~~~~~~~~~~---------------~~~~v~~~~-~s~~g~~l~~g~~d~~i~vwd~~~~~~  304 (340)
T 1got_B          248 ATCRLFDLRADQELMTYSHDN---------------IICGITSVS-FSKSGRLLLAGYDDFNCNVWDALKADR  304 (340)
T ss_dssp             SCEEEEETTTTEEEEEECCTT---------------CCSCEEEEE-ECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred             CcEEEEECCCCcEEEEEccCC---------------cccceEEEE-ECCCCCEEEEECCCCeEEEEEcccCcE
Confidence            8999999 32 2 22221100               011235566 577888888887888999998765443

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=95.25  E-value=0.12  Score=53.44  Aligned_cols=123  Identities=15%  Similarity=0.124  Sum_probs=66.2

Q ss_pred             CceEEEEcCC----CcEEEEECCC------------CeEEEEeCCCC---c--ccccEEEecCCCCcccccCCccccccc
Q 014345           22 EPYSVEVLPG----GELLILDSAN------------SNLYRISSSLS---L--YSRPKLVAGSAEGYSGHVDGKPREARM   80 (426)
Q Consensus        22 ~P~GIaVd~d----G~LYVaD~~n------------~rI~kid~dg~---~--~g~v~~vaG~~~G~~G~~dG~a~~A~L   80 (426)
                      .+.|||++|+    |.|||+-+..            .+|.|+.....   .  ....+++....... +          -
T Consensus        70 Gllgia~~P~f~~n~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~-~----------~  138 (463)
T 2wg3_C           70 GLLSLAFHPNYKKNGKLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELH-R----------K  138 (463)
T ss_dssp             SEEEEEECTTHHHHCEEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESS-S----------S
T ss_pred             cceeeEeCCCCcCCCEEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCC-C----------c
Confidence            6789999985    8899986421            48888876421   1  12233443221000 0          1


Q ss_pred             CCcceEEEcCCCCEEEE--ECC---------------CCEEEEEc-CCCc----EEEeCCccCCCCCCCCCCcccccCCC
Q 014345           81 NHPKGLTVDDRGNIYIA--DTM---------------NMAIRKIS-DSGV----TTIAGGKWGRGGGHVDGPSEDAKFSN  138 (426)
Q Consensus        81 n~P~GIaVd~dG~LYVA--Dt~---------------N~rIrk~d-~g~V----stIaGg~~g~~~G~~dG~~~~a~f~~  138 (426)
                      ..-..|++++||.|||+  |..               ...|.+|+ ++.-    ..|..+....+........-..-+.+
T Consensus       139 H~g~~l~fgpDG~LYv~~Gd~~~~~~~~~~~q~~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RN  218 (463)
T 2wg3_C          139 HLGGQLLFGPDGFLYIILGDGMITLDDMEEMDGLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHD  218 (463)
T ss_dssp             SCEEEEEECTTSCEEEEECCTTCCHHHHHHCTTCCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSS
T ss_pred             ccCCcEeECCCCcEEEEeCCCCCCCCccccccCcCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCC
Confidence            23457999999999999  332               24677777 4421    11111100000000000111234789


Q ss_pred             CCeeEEECCC-----C--eEEEEEC
Q 014345          139 DFDVVYIGSS-----C--SLLVIDR  156 (426)
Q Consensus       139 P~gIa~vd~~-----G--~LYVaDs  156 (426)
                      |+++++ |+.     |  .||++|.
T Consensus       219 p~gla~-dp~tg~~~G~l~~~~~D~  242 (463)
T 2wg3_C          219 PGRCAV-DRHPTDININLTILCSDS  242 (463)
T ss_dssp             CCBEEE-ESSCSSTTCSEEEEEECC
T ss_pred             cceEEE-CCCCCCcccceEEEeccc
Confidence            999995 554     4  6788886

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=95.24  E-value=0.85  Score=43.99  Aligned_cols=122  Identities=9%  Similarity=0.021  Sum_probs=80.0

Q ss_pred             CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCC
Q 014345           22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN  101 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N  101 (426)
                      .-..|++.++|.++++-...+.|..++.....  .+.++......         ....+.....+++.++|.++++-..+
T Consensus       251 ~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~--~~~~~~~~~~~---------~~~~~~~v~~~~~s~~g~~l~~g~~d  319 (380)
T 3iz6_a          251 DINSVKFFPDGQRFGTGSDDGTCRLFDMRTGH--QLQVYNREPDR---------NDNELPIVTSVAFSISGRLLFAGYSN  319 (380)
T ss_dssp             CCCEEEECTTSSEEEEECSSSCEEEEETTTTE--EEEEECCCCSS---------SCCSSCSCSEEEECSSSSEEEEECTT
T ss_pred             CeEEEEEecCCCeEEEEcCCCeEEEEECCCCc--EEEEecccccc---------cccccCceEEEEECCCCCEEEEEECC
Confidence            35788999999988888888899999887421  12222221100         00112335789999999999998889


Q ss_pred             CEEEEEc--CCCc-EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCC
Q 014345          102 MAIRKIS--DSGV-TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHF  168 (426)
Q Consensus       102 ~rIrk~d--~g~V-stIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~  168 (426)
                      +.|+.+|  .+.. ..+.....    +         .-..-..|+ +.++|.++++-...+.|+.+++.+
T Consensus       320 g~i~vwd~~~~~~~~~~~~~~~----~---------h~~~v~~l~-~s~dg~~l~sgs~D~~i~iW~~~~  375 (380)
T 3iz6_a          320 GDCYVWDTLLAEMVLNLGTLQN----S---------HEGRISCLG-LSSDGSALCTGSWDKNLKIWAFSG  375 (380)
T ss_dssp             SCEEEEETTTCCEEEEECCSCS----S---------CCCCCCEEE-ECSSSSEEEEECTTSCEEEEECCS
T ss_pred             CCEEEEECCCCceEEEEecccC----C---------CCCceEEEE-ECCCCCEEEEeeCCCCEEEEecCC
Confidence            9999999  3333 33321100    0         111346777 578888888888889999998764

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=95.22  E-value=0.63  Score=48.41  Aligned_cols=129  Identities=12%  Similarity=-0.084  Sum_probs=72.4

Q ss_pred             CceEEEEcCCCcE-EEEEC------------------CCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCC
Q 014345           22 EPYSVEVLPGGEL-LILDS------------------ANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNH   82 (426)
Q Consensus        22 ~P~GIaVd~dG~L-YVaD~------------------~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~   82 (426)
                      .++++-+.+++++ |+++.                  ..++|..++.+..   ++...+-.  +..|           ..
T Consensus       189 ~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~---k~~~tI~v--g~~g-----------~~  252 (462)
T 2ece_A          189 LAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR---KRIHSLTL--GEEN-----------RM  252 (462)
T ss_dssp             CCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT---EEEEEEES--CTTE-----------EE
T ss_pred             ccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCC---cEeeEEec--CCCC-----------Cc
Confidence            4667878888884 55552                  3789999998742   22111111  1001           13


Q ss_pred             cceEEE--cCCCC-EEEEEC-----CCCEEEEEc--CCCc---EEEeCCccCCCCCCCC-CCc-ccccCCCCCeeEEECC
Q 014345           83 PKGLTV--DDRGN-IYIADT-----MNMAIRKIS--DSGV---TTIAGGKWGRGGGHVD-GPS-EDAKFSNDFDVVYIGS  147 (426)
Q Consensus        83 P~GIaV--d~dG~-LYVADt-----~N~rIrk~d--~g~V---stIaGg~~g~~~G~~d-G~~-~~a~f~~P~gIa~vd~  147 (426)
                      |..|.+  +++|. +||+..     .++.|..+.  ++..   .+|--..... .+... -+. ..+.-..|.+|.+..+
T Consensus       253 P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v-~~~lp~~~~~f~~~~~~pa~I~lS~D  331 (462)
T 2ece_A          253 ALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPL-EGNLPEILKPFKAVPPLVTDIDISLD  331 (462)
T ss_dssp             EEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEEC-CSSCCGGGGGGTEECCCCCCEEECTT
T ss_pred             cceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccc-cccccccccccccCCCceeEEEECCC
Confidence            778877  88876 888877     777787665  3322   1211000000 00000 000 0000246899995444


Q ss_pred             CCeEEEEECCCCeEEEEEcC
Q 014345          148 SCSLLVIDRGNRAIREIQLH  167 (426)
Q Consensus       148 ~G~LYVaDsgN~rIr~I~l~  167 (426)
                      ...|||++++.+.|.+++..
T Consensus       332 GrfLYVSnrg~d~VavfdV~  351 (462)
T 2ece_A          332 DKFLYLSLWGIGEVRQYDIS  351 (462)
T ss_dssp             SCEEEEEETTTTEEEEEECS
T ss_pred             CCEEEEEeCCCCEEEEEEec
Confidence            44799999999999999975

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=95.19  E-value=0.8  Score=43.47  Aligned_cols=112  Identities=7%  Similarity=-0.041  Sum_probs=75.2

Q ss_pred             CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCC-EEEEECC
Q 014345           22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIADTM  100 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~-LYVADt~  100 (426)
                      ...++++.++|.++++-..++.|..++..+.   .+..+.+.                -.....|++++++. ++++-..
T Consensus       165 ~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~---~~~~~~~h----------------~~~v~~~~~~~~~~~~l~s~~~  225 (383)
T 3ei3_B          165 WYCCVDVSVSRQMLATGDSTGRLLLLGLDGH---EIFKEKLH----------------KAKVTHAEFNPRCDWLMATSSV  225 (383)
T ss_dssp             CEEEEEEETTTTEEEEEETTSEEEEEETTSC---EEEEEECS----------------SSCEEEEEECSSCTTEEEEEET
T ss_pred             CeEEEEECCCCCEEEEECCCCCEEEEECCCC---EEEEeccC----------------CCcEEEEEECCCCCCEEEEEeC
Confidence            4678899999887777777889999988642   23333322                12357899999988 7777777


Q ss_pred             CCEEEEEc--C----CCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECC-CCeEEEEECCCCeEEEEEcCCCc
Q 014345          101 NMAIRKIS--D----SGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGS-SCSLLVIDRGNRAIREIQLHFDD  170 (426)
Q Consensus       101 N~rIrk~d--~----g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~-~G~LYVaDsgN~rIr~I~l~~~~  170 (426)
                      ++.|+.++  .    +......+.                 -.....|+ +.+ ++.++++-..++.|+.+++....
T Consensus       226 d~~i~iwd~~~~~~~~~~~~~~~~-----------------~~~v~~~~-~s~~~~~~l~~~~~d~~i~iwd~~~~~  284 (383)
T 3ei3_B          226 DATVKLWDLRNIKDKNSYIAEMPH-----------------EKPVNAAY-FNPTDSTKLLTTDQRNEIRVYSSYDWS  284 (383)
T ss_dssp             TSEEEEEEGGGCCSTTCEEEEEEC-----------------SSCEEEEE-ECTTTSCEEEEEESSSEEEEEETTBTT
T ss_pred             CCEEEEEeCCCCCcccceEEEecC-----------------CCceEEEE-EcCCCCCEEEEEcCCCcEEEEECCCCc
Confidence            88999998  2    222222221                 01345677 466 77777777778899999987543

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=95.19  E-value=0.31  Score=47.30  Aligned_cols=62  Identities=16%  Similarity=0.083  Sum_probs=40.3

Q ss_pred             EcCCC-CEEEE-ECCCCEEEEEc-CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEE
Q 014345           88 VDDRG-NIYIA-DTMNMAIRKIS-DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIRE  163 (426)
Q Consensus        88 Vd~dG-~LYVA-Dt~N~rIrk~d-~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~  163 (426)
                      ++++| .||.+ |.....|.+++ +|+ ..++..+                   ....|++  .++.||++|...+.|.+
T Consensus       230 ~~~~g~~Iy~~~~~~~~~i~~~~~DG~~r~~l~~~-------------------~~~~i~i--~~d~Iy~td~~~~~i~~  288 (302)
T 3s25_A          230 YNVYGSLIFYQRGGDNPALCVVKNDGTGFKELAKG-------------------EFCNINV--TSQYVYFTDFVSNKEYC  288 (302)
T ss_dssp             EEEETTEEEEEECSSSCEEEEEETTSCCCEEEEES-------------------CEEEEEE--CSSEEEEEETTTCCEEE
T ss_pred             EEECCCEEEEEECCCCcEEEEEECCCCccEEeeCC-------------------ccceEEE--eCCEEEEEECCCCeEEE
Confidence            44444 47775 55567888888 666 3444321                   0124553  56799999998888999


Q ss_pred             EEcCCCc
Q 014345          164 IQLHFDD  170 (426)
Q Consensus       164 I~l~~~~  170 (426)
                      +.+++..
T Consensus       289 ~~~dGs~  295 (302)
T 3s25_A          289 TSTQNPD  295 (302)
T ss_dssp             EESSSCC
T ss_pred             EECCCCC
Confidence            9887644

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=95.07  E-value=2  Score=39.41  Aligned_cols=115  Identities=16%  Similarity=0.114  Sum_probs=74.9

Q ss_pred             CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCC
Q 014345           22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN  101 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N  101 (426)
                      ...+++++++|+++++-...+.|..++.....  .+..+.+.                -..-..+++.++++++++-..+
T Consensus        67 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~--~~~~~~~~----------------~~~v~~~~~~~~~~~l~s~~~d  128 (312)
T 4ery_A           67 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGK--CLKTLKGH----------------SNYVFCCNFNPQSNLIVSGSFD  128 (312)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTTCC--EEEEEECC----------------SSCEEEEEECSSSSEEEEEETT
T ss_pred             ceEEEEEcCCCCEEEEECCCCEEEEEECCCCc--EEEEEcCC----------------CCCEEEEEEcCCCCEEEEEeCC
Confidence            46789999999988887788899999876421  12233222                1123578888999888887778


Q ss_pred             CEEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceE
Q 014345          102 MAIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCA  172 (426)
Q Consensus       102 ~rIrk~d--~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~~  172 (426)
                      +.|+.++  .+. +.++.+..                 ..-..++ ..+++.++++-...+.|+.+++....+.
T Consensus       129 ~~i~iwd~~~~~~~~~~~~~~-----------------~~v~~~~-~~~~~~~l~~~~~d~~i~~wd~~~~~~~  184 (312)
T 4ery_A          129 ESVRIWDVKTGKCLKTLPAHS-----------------DPVSAVH-FNRDGSLIVSSSYDGLCRIWDTASGQCL  184 (312)
T ss_dssp             SCEEEEETTTCCEEEEECCCS-----------------SCEEEEE-ECTTSSEEEEEETTSCEEEEETTTCCEE
T ss_pred             CcEEEEECCCCEEEEEecCCC-----------------CcEEEEE-EcCCCCEEEEEeCCCcEEEEECCCCcee
Confidence            8899998  333 33332210                 0124555 4667777676666788888888765543

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=95.05  E-value=0.098  Score=50.84  Aligned_cols=109  Identities=12%  Similarity=0.100  Sum_probs=67.4

Q ss_pred             EEEcCCC-cEEEEE---CCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCC
Q 014345           26 VEVLPGG-ELLILD---SANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN  101 (426)
Q Consensus        26 IaVd~dG-~LYVaD---~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N  101 (426)
                      .++.++| .||++|   ..+..|++++.+|+   ....+....               . .|  +..+ .+.||.+|.+.
T Consensus       109 ~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs---~~~~lt~~~---------------~-~~--~~~~-g~~iy~t~~g~  166 (302)
T 3s25_A          109 IYASLIGNYIYYLHYDTQTATSLYRIRIDGE---EKKKIKNHY---------------L-FT--CNTS-DRYFYYNNPKN  166 (302)
T ss_dssp             EEEEEETTEEEEEEESSSSCEEEEEEETTSC---CCEEEESSC---------------C-CC--SEEE-TTEEEEECTTT
T ss_pred             cEEEEeCCEEEEEeecCCCCceEEEEECCCC---CeEEEeCCC---------------c-eE--eeEE-CCEEEEEeCCC
Confidence            3455544 599998   67889999999974   234443221               0 12  1222 34799998888


Q ss_pred             CEEEEEc-CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCC-CeEEEEEcCCCceEeecC
Q 014345          102 MAIRKIS-DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGN-RAIREIQLHFDDCAYQYG  176 (426)
Q Consensus       102 ~rIrk~d-~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN-~rIr~I~l~~~~~~~~~~  176 (426)
                      ..|.+++ +|+ ..++..+                    +..+++++..+.||.+|+.+ ..|.++++++........
T Consensus       167 ~~Iy~~~l~g~~~~~l~~~--------------------~~~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~Lt~  224 (302)
T 3s25_A          167 GQLYRYDTASQSEALFYDC--------------------NCYKPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVVLTE  224 (302)
T ss_dssp             CCEEEEETTTTEEEEEECS--------------------CEEEEEEEETTEEEEEEGGGTTEEEEECSSSCCCEECSC
T ss_pred             ceEEEEECCCCCEEEEeCC--------------------CccceeeecCCEEEEEEcCCCcEEEEEECCCCCeEEEeC
Confidence            8899998 555 3444321                    11122244577888888754 689899888766554433

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=94.89  E-value=1.2  Score=41.40  Aligned_cols=112  Identities=6%  Similarity=0.050  Sum_probs=76.5

Q ss_pred             CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCC
Q 014345           22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN  101 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N  101 (426)
                      .-.+|+++|+|.++++-...+.|..++.....  .+..+.+..                ..-..+++.++++++++-..+
T Consensus        15 ~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~--~~~~~~~~~----------------~~v~~~~~~~~~~~l~s~s~d   76 (304)
T 2ynn_A           15 RVKGIDFHPTEPWVLTTLYSGRVELWNYETQV--EVRSIQVTE----------------TPVRAGKFIARKNWIIVGSDD   76 (304)
T ss_dssp             CEEEEEECSSSSEEEEEETTSEEEEEETTTTE--EEEEEECCS----------------SCEEEEEEEGGGTEEEEEETT
T ss_pred             ceEEEEECCCCCEEEEEcCCCcEEEEECCCCc--eeEEeeccC----------------CcEEEEEEeCCCCEEEEECCC
Confidence            57899999999988887788999999987421  223332221                012467888899988887788


Q ss_pred             CEEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCC
Q 014345          102 MAIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFD  169 (426)
Q Consensus       102 ~rIrk~d--~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~  169 (426)
                      +.|+.++  .+. +.++.+-.                 ..-..|+ +.+++.++++-...+.|+.+++...
T Consensus        77 ~~i~vwd~~~~~~~~~~~~h~-----------------~~v~~~~-~~~~~~~l~sgs~D~~v~lWd~~~~  129 (304)
T 2ynn_A           77 FRIRVFNYNTGEKVVDFEAHP-----------------DYIRSIA-VHPTKPYVLSGSDDLTVKLWNWENN  129 (304)
T ss_dssp             SEEEEEETTTCCEEEEEECCS-----------------SCEEEEE-ECSSSSEEEEEETTSCEEEEEGGGT
T ss_pred             CEEEEEECCCCcEEEEEeCCC-----------------CcEEEEE-EcCCCCEEEEECCCCeEEEEECCCC
Confidence            9999999  344 34443311                 1235666 5677777777777888998887654

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=94.77  E-value=0.87  Score=43.12  Aligned_cols=109  Identities=6%  Similarity=0.071  Sum_probs=71.3

Q ss_pred             CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCC
Q 014345           22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN  101 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N  101 (426)
                      ...+|++.++|+++++-...+.|..++....   .........    +         .......++++++|.++++-..+
T Consensus       228 ~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~---~~~~~~~~~----~---------~~~~v~~~~~s~~g~~l~~g~~d  291 (340)
T 1got_B          228 DINAICFFPNGNAFATGSDDATCRLFDLRAD---QELMTYSHD----N---------IICGITSVSFSKSGRLLLAGYDD  291 (340)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEEEECCT----T---------CCSCEEEEEECTTSSEEEEEETT
T ss_pred             CEEEEEEcCCCCEEEEEcCCCcEEEEECCCC---cEEEEEccC----C---------cccceEEEEECCCCCEEEEECCC
Confidence            4678999999998888878888999987632   211111110    0         01124678999999999888888


Q ss_pred             CEEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEE
Q 014345          102 MAIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREI  164 (426)
Q Consensus       102 ~rIrk~d--~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I  164 (426)
                      +.|+.++  .+. +.++.|-.                 ..-.+|+ +.+++.++++-...+.|+.+
T Consensus       292 ~~i~vwd~~~~~~~~~~~~h~-----------------~~v~~~~-~s~dg~~l~s~s~D~~i~iW  339 (340)
T 1got_B          292 FNCNVWDALKADRAGVLAGHD-----------------NRVSCLG-VTDDGMAVATGSWDSFLKIW  339 (340)
T ss_dssp             SEEEEEETTTCCEEEEEECCS-----------------SCEEEEE-ECTTSSCEEEEETTSCEEEE
T ss_pred             CeEEEEEcccCcEeeEeecCC-----------------CcEEEEE-EcCCCCEEEEEcCCccEEec
Confidence            9999999  333 34454311                 1234666 46777777766667777664

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=94.72  E-value=0.36  Score=46.71  Aligned_cols=116  Identities=9%  Similarity=0.049  Sum_probs=71.3

Q ss_pred             ceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCC-CEEEEECCC
Q 014345           23 PYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRG-NIYIADTMN  101 (426)
Q Consensus        23 P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG-~LYVADt~N  101 (426)
                      -.+|++.++|+++++-...+.|..++.....  .+..+.|.                -..-..+++.+++ .++++-..+
T Consensus       130 V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~--~~~~~~~h----------------~~~V~~~~~~~~~~~~l~s~s~D  191 (344)
T 4gqb_B          130 VSTVSVLSSGTQAVSGSKDICIKVWDLAQQV--VLSSYRAH----------------AAQVTCVAASPHKDSVFLSCSED  191 (344)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTTE--EEEEECCC----------------SSCEEEEEECSSCTTEEEEEETT
T ss_pred             EEEEEECCCCCEEEEEeCCCeEEEEECCCCc--EEEEEcCc----------------CCceEEEEecCCCCCceeeeccc
Confidence            5688899999988887778889999876421  12233221                1123578888877 477776667


Q ss_pred             CEEEEEc--CCCc-EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCce
Q 014345          102 MAIRKIS--DSGV-TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDC  171 (426)
Q Consensus       102 ~rIrk~d--~g~V-stIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~  171 (426)
                      +.|+.+|  .+.. .++.....               -.....+++...++.++++-..++.|+.+++....+
T Consensus       192 ~~v~iwd~~~~~~~~~~~~~~~---------------~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~  249 (344)
T 4gqb_B          192 NRILLWDTRCPKPASQIGCSAP---------------GYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSC  249 (344)
T ss_dssp             SCEEEEETTSSSCEEECC-------------------CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--C
T ss_pred             cccccccccccceeeeeeccee---------------eccceeeeecCCCCcceEEeccCCcEEEEECCCCcE
Confidence            8899988  3332 33321100               012456665445667777777778888888765444

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=94.56  E-value=0.56  Score=44.61  Aligned_cols=107  Identities=23%  Similarity=0.260  Sum_probs=66.4

Q ss_pred             eEEEEcCCCcEEEEECCCCeEEEEeCCCC----cccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEEC
Q 014345           24 YSVEVLPGGELLILDSANSNLYRISSSLS----LYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADT   99 (426)
Q Consensus        24 ~GIaVd~dG~LYVaD~~n~rI~kid~dg~----~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt   99 (426)
                      ..+.+|++|.||++  .+++|+|+++..+    +.+. .+.+|.. +             ...=.-|+++++|.||.++ 
T Consensus        91 ~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~-a~~vg~~-g-------------w~~~~~lff~p~G~Lyav~-  152 (236)
T 1tl2_A           91 QFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIAR-ATEVGSG-G-------------WSGFKFLFFHPNGYLYAVH-  152 (236)
T ss_dssp             SEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHH-SEEEECS-S-------------GGGEEEEEECTTSCEEEEE-
T ss_pred             eEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceecc-ccEeccC-C-------------CCceEEEEECCCceEEEEe-
Confidence            57899999999999  3589999988421    1111 1222221 1             1112679999999999999 


Q ss_pred             CCCEEEEEc-C-CC------cEEEeC-CccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCC
Q 014345          100 MNMAIRKIS-D-SG------VTTIAG-GKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHF  168 (426)
Q Consensus       100 ~N~rIrk~d-~-g~------VstIaG-g~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~  168 (426)
                       +.++.+-. . +.      -.++.| +.+.             .+  + -++ .+++++||.+.  +++|.+.....
T Consensus       153 -dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~-------------~y--r-~l~-f~~~G~l~~v~--~g~~Y~~~~p~  210 (236)
T 1tl2_A          153 -GQQFYKALPPVSNQDNWLARATKIGQGGWD-------------TF--K-FLF-FSSVGTLFGVQ--GGKFYEDYPPS  210 (236)
T ss_dssp             -TTEEEEECCCSSTTCCHHHHCEEEESSSGG-------------GE--E-EEE-ECTTSCEEEEE--TTEEEEESCCC
T ss_pred             -CCcEEecCCCCCCCcccccccceeccCCcc-------------eE--E-EEE-ECCCCcEEEEe--CCeEEecCCcc
Confidence             55675544 2 11      122322 2111             11  1 144 68999999999  78999887654

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=94.49  E-value=0.5  Score=44.07  Aligned_cols=117  Identities=8%  Similarity=-0.046  Sum_probs=72.7

Q ss_pred             CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCC
Q 014345           22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN  101 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N  101 (426)
                      .-.+++++++|+++++-..++.|..++.++.....+..+.+.                -.....|++.++|+++++-..+
T Consensus        10 ~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h----------------~~~v~~~~~~~~~~~l~~~~~d   73 (372)
T 1k8k_C           10 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEH----------------NGQVTGVDWAPDSNRIVTCGTD   73 (372)
T ss_dssp             CCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECC----------------SSCEEEEEEETTTTEEEEEETT
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCC----------------CCcccEEEEeCCCCEEEEEcCC
Confidence            457899999999888877788999998774210123333222                1125789999999877776667


Q ss_pred             CEEEEEc--CCCcE-EEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCc
Q 014345          102 MAIRKIS--DSGVT-TIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDD  170 (426)
Q Consensus       102 ~rIrk~d--~g~Vs-tIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~  170 (426)
                      +.|+.++  .+... .+.-...               -.....++ +.+++.++++-..++.|+.+++....
T Consensus        74 g~i~vwd~~~~~~~~~~~~~~~---------------~~~v~~~~-~~~~~~~l~~~~~d~~v~i~d~~~~~  129 (372)
T 1k8k_C           74 RNAYVWTLKGRTWKPTLVILRI---------------NRAARCVR-WAPNEKKFAVGSGSRVISICYFEQEN  129 (372)
T ss_dssp             SCEEEEEEETTEEEEEEECCCC---------------SSCEEEEE-ECTTSSEEEEEETTSSEEEEEEETTT
T ss_pred             CeEEEEECCCCeeeeeEEeecC---------------CCceeEEE-ECCCCCEEEEEeCCCEEEEEEecCCC
Confidence            8888888  44322 2211100               01245666 45666665555567788887766543

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=94.46  E-value=0.71  Score=42.55  Aligned_cols=116  Identities=11%  Similarity=0.050  Sum_probs=73.8

Q ss_pred             CceEEEEcCC---CcEEEEECCCCeEEEEeCCCCccccc-EEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEE
Q 014345           22 EPYSVEVLPG---GELLILDSANSNLYRISSSLSLYSRP-KLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIA   97 (426)
Q Consensus        22 ~P~GIaVd~d---G~LYVaD~~n~rI~kid~dg~~~g~v-~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVA   97 (426)
                      .-.+|+++++   |+++++-..++.|..++.+... ..+ ..+.+.                -.....|++.++|+++++
T Consensus        41 ~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~h----------------~~~v~~~~~~~~~~~l~s  103 (368)
T 3mmy_A           41 SIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSG-QTIPKAQQMH----------------TGPVLDVCWSDDGSKVFT  103 (368)
T ss_dssp             CEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTS-CEEEEEEEEC----------------SSCEEEEEECTTSSEEEE
T ss_pred             ceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCC-ceeEEEeccc----------------cCCEEEEEECcCCCEEEE
Confidence            4689999998   6877777778888888876311 111 223222                112568999999987777


Q ss_pred             ECCCCEEEEEc-C-CCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEE-CCCCeEEEEECCCCeEEEEEcCCCce
Q 014345           98 DTMNMAIRKIS-D-SGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYI-GSSCSLLVIDRGNRAIREIQLHFDDC  171 (426)
Q Consensus        98 Dt~N~rIrk~d-~-g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~v-d~~G~LYVaDsgN~rIr~I~l~~~~~  171 (426)
                      -..++.|+.++ . +....+.+..                 .....+++. .+++.++++-..++.|+.+++....+
T Consensus       104 ~~~dg~v~iwd~~~~~~~~~~~~~-----------------~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~  163 (368)
T 3mmy_A          104 ASCDKTAKMWDLSSNQAIQIAQHD-----------------APVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNP  163 (368)
T ss_dssp             EETTSEEEEEETTTTEEEEEEECS-----------------SCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSC
T ss_pred             EcCCCcEEEEEcCCCCceeecccc-----------------CceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcE
Confidence            67788999999 3 3333333210                 123455531 66777777766678888888765443

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=94.38  E-value=1.4  Score=42.10  Aligned_cols=131  Identities=17%  Similarity=0.202  Sum_probs=77.1

Q ss_pred             CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCC
Q 014345           22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN  101 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N  101 (426)
                      ...+++++++|.++++-..++.|..++.....  .+..+.+.                -.....|++.++|.++++-..+
T Consensus       141 ~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~--~~~~~~~h----------------~~~v~~~~~~~~~~~l~s~~~d  202 (420)
T 3vl1_A          141 EITKLKFFPSGEALISSSQDMQLKIWSVKDGS--NPRTLIGH----------------RATVTDIAIIDRGRNVLSASLD  202 (420)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTTCC--CCEEEECC----------------SSCEEEEEEETTTTEEEEEETT
T ss_pred             ccEEEEECCCCCEEEEEeCCCeEEEEeCCCCc--CceEEcCC----------------CCcEEEEEEcCCCCEEEEEcCC
Confidence            56789999999877777778899999876421  23333322                1124678999999877776677


Q ss_pred             CEEEEEc--CCC-cEEEeCCccCCCCCCC--------CCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCc
Q 014345          102 MAIRKIS--DSG-VTTIAGGKWGRGGGHV--------DGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDD  170 (426)
Q Consensus       102 ~rIrk~d--~g~-VstIaGg~~g~~~G~~--------dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~  170 (426)
                      +.|+.++  .+. +.++.+..... ....        ..............++ +.+++.++++-..++.|+.+++....
T Consensus       203 ~~v~iwd~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~s~~~~~l~~~~~dg~i~i~d~~~~~  280 (420)
T 3vl1_A          203 GTIRLWECGTGTTIHTFNRKENPH-DGVNSIALFVGTDRQLHEISTSKKNNLE-FGTYGKYVIAGHVSGVITVHNVFSKE  280 (420)
T ss_dssp             SCEEEEETTTTEEEEEECBTTBTT-CCEEEEEEEECCCSSCGGGCCCCCCTTC-SSCTTEEEEEEETTSCEEEEETTTCC
T ss_pred             CcEEEeECCCCceeEEeecCCCCC-CCccEEEEecCCcceeeecccCcccceE-EcCCCCEEEEEcCCCeEEEEECCCCc
Confidence            8888888  333 33443211000 0000        0000000112334455 46778777777778889988887654


Q ss_pred             eE
Q 014345          171 CA  172 (426)
Q Consensus       171 ~~  172 (426)
                      ..
T Consensus       281 ~~  282 (420)
T 3vl1_A          281 QT  282 (420)
T ss_dssp             EE
T ss_pred             ee
Confidence            43

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=94.32  E-value=3.3  Score=39.71  Aligned_cols=117  Identities=12%  Similarity=0.112  Sum_probs=73.7

Q ss_pred             CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEE---
Q 014345           22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIAD---   98 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVAD---   98 (426)
                      ...+++++++|+++++-...+.|..++...   +........  +..+           ..+..+++.++|.++++-   
T Consensus       178 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~---~~~~~~~~~--~~~~-----------~~~~~~~~~~~~~~l~~g~~~  241 (402)
T 2aq5_A          178 TIYSVDWSRDGALICTSCRDKRVRVIEPRK---GTVVAEKDR--PHEG-----------TRPVHAVFVSEGKILTTGFSR  241 (402)
T ss_dssp             CEEEEEECTTSSCEEEEETTSEEEEEETTT---TEEEEEEEC--SSCS-----------SSCCEEEECSTTEEEEEEECT
T ss_pred             ceEEEEECCCCCEEEEEecCCcEEEEeCCC---Cceeeeecc--CCCC-----------CcceEEEEcCCCcEEEEeccC
Confidence            568899999998777766788999998864   222222101  0000           125778999999888876   


Q ss_pred             CCCCEEEEEc-C-CC--cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCc
Q 014345           99 TMNMAIRKIS-D-SG--VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDD  170 (426)
Q Consensus        99 t~N~rIrk~d-~-g~--VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~  170 (426)
                      ..++.|+.++ . +.  +.......                -.....+++..+...|+++...++.|+.+++....
T Consensus       242 ~~d~~i~iwd~~~~~~~~~~~~~~~----------------~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~  301 (402)
T 2aq5_A          242 MSERQVALWDTKHLEEPLSLQELDT----------------SSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEA  301 (402)
T ss_dssp             TCCEEEEEEETTBCSSCSEEEECCC----------------CSSCEEEEEETTTTEEEEEETTCSCEEEEEECSST
T ss_pred             CCCceEEEEcCccccCCceEEeccC----------------CCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCC
Confidence            5688899998 2 22  22222110                01245667544444667788778899999987654

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=94.31  E-value=0.9  Score=48.72  Aligned_cols=119  Identities=10%  Similarity=-0.004  Sum_probs=76.0

Q ss_pred             CCceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECC
Q 014345           21 IEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTM  100 (426)
Q Consensus        21 ~~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~  100 (426)
                      ....+|+.|++|+|||+-..+ -|.+++.++   +.+..+.. .       ++.    .-+....|+.|++|+|||+-. 
T Consensus       495 ~~i~~i~~d~~g~lWigt~~~-Gl~~~~~~~---~~~~~~~~-~-------~~l----~~~~i~~i~~d~~g~lWi~T~-  557 (781)
T 3v9f_A          495 NFVRSIAQDSEGRFWIGTFGG-GVGIYTPDM---QLVRKFNQ-Y-------EGF----CSNTINQIYRSSKGQMWLATG-  557 (781)
T ss_dssp             SCEEEEEECTTCCEEEEESSS-CEEEECTTC---CEEEEECT-T-------TTC----SCSCEEEEEECTTSCEEEEET-
T ss_pred             ceeEEEEEcCCCCEEEEEcCC-CEEEEeCCC---CeEEEccC-C-------CCC----CCCeeEEEEECCCCCEEEEEC-
Confidence            357899999999999997533 488898874   23333321 1       111    023457899999999999976 


Q ss_pred             CCEEEEEc-C-CCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceE
Q 014345          101 NMAIRKIS-D-SGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCA  172 (426)
Q Consensus       101 N~rIrk~d-~-g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~~  172 (426)
                      ++-|.+++ . +.+..+ ...        +|....    ...+|+ .|.+|+|||+-  ++-|.++++......
T Consensus       558 ~Glv~~~d~~~~~~~~~-~~~--------~gl~~~----~i~~i~-~d~~g~lW~~t--~~Gl~~~~~~~~~~~  615 (781)
T 3v9f_A          558 EGLVCFPSARNFDYQVF-QRK--------EGLPNT----HIRAIS-EDKNGNIWAST--NTGISCYITSKKCFY  615 (781)
T ss_dssp             TEEEEESCTTTCCCEEE-CGG--------GTCSCC----CCCEEE-ECSSSCEEEEC--SSCEEEEETTTTEEE
T ss_pred             CCceEEECCCCCcEEEc-ccc--------CCCCCc----eEEEEE-ECCCCCEEEEc--CCceEEEECCCCceE
Confidence            44448888 3 334433 211        111111    235776 78999999996  455899998866554

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=94.29  E-value=0.99  Score=43.43  Aligned_cols=118  Identities=9%  Similarity=0.067  Sum_probs=72.7

Q ss_pred             CceEEEEcC-CCcEEEEECCCCeEEEEeCCCCcc-----cccEEEecCCCCcccccCCcccccccCCcceEEEcCCC-CE
Q 014345           22 EPYSVEVLP-GGELLILDSANSNLYRISSSLSLY-----SRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRG-NI   94 (426)
Q Consensus        22 ~P~GIaVd~-dG~LYVaD~~n~rI~kid~dg~~~-----g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG-~L   94 (426)
                      ...++++++ +++++++-...+.|..++......     ..+..+.+.                -.....|++.++| ++
T Consensus        83 ~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h----------------~~~v~~~~~~p~~~~~  146 (402)
T 2aq5_A           83 PVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGH----------------TKRVGIVAWHPTAQNV  146 (402)
T ss_dssp             CEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECC----------------SSCEEEEEECSSBTTE
T ss_pred             CEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCC----------------CCeEEEEEECcCCCCE
Confidence            357889998 888888777788888888764210     012222222                1235689999987 67


Q ss_pred             EEEECCCCEEEEEc--CCC-cEEEe-CCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCc
Q 014345           95 YIADTMNMAIRKIS--DSG-VTTIA-GGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDD  170 (426)
Q Consensus        95 YVADt~N~rIrk~d--~g~-VstIa-Gg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~  170 (426)
                      +++-..++.|+.++  .+. +.++. ...                -.....|+ +.+++.++++-..++.|+.+++....
T Consensus       147 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----------------~~~v~~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~  209 (402)
T 2aq5_A          147 LLSAGCDNVILVWDVGTGAAVLTLGPDVH----------------PDTIYSVD-WSRDGALICTSCRDKRVRVIEPRKGT  209 (402)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECTTTC----------------CSCEEEEE-ECTTSSCEEEEETTSEEEEEETTTTE
T ss_pred             EEEEcCCCEEEEEECCCCCccEEEecCCC----------------CCceEEEE-ECCCCCEEEEEecCCcEEEEeCCCCc
Confidence            77766678899988  333 23331 110                01235666 45566666655567788888877655


Q ss_pred             eE
Q 014345          171 CA  172 (426)
Q Consensus       171 ~~  172 (426)
                      +.
T Consensus       210 ~~  211 (402)
T 2aq5_A          210 VV  211 (402)
T ss_dssp             EE
T ss_pred             ee
Confidence            43

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=94.26  E-value=2.2  Score=41.01  Aligned_cols=122  Identities=11%  Similarity=0.067  Sum_probs=72.6

Q ss_pred             ceEEEEcC-CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCC
Q 014345           23 PYSVEVLP-GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN  101 (426)
Q Consensus        23 P~GIaVd~-dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N  101 (426)
                      ...+++.+ +++++++-...+.|..++..... ..+..+.|.                -..-..|++.++|..+++-..+
T Consensus       208 v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~-~~~~~~~~h----------------~~~v~~v~~~p~~~~l~s~s~D  270 (380)
T 3iz6_a          208 VLSLSINSLNANMFISGSCDTTVRLWDLRITS-RAVRTYHGH----------------EGDINSVKFFPDGQRFGTGSDD  270 (380)
T ss_dssp             EEEEEECSSSCCEEEEEETTSCEEEEETTTTC-CCCEEECCC----------------SSCCCEEEECTTSSEEEEECSS
T ss_pred             eEEEEeecCCCCEEEEEECCCeEEEEECCCCC-cceEEECCc----------------CCCeEEEEEecCCCeEEEEcCC
Confidence            34455544 55666666566666666654110 112222221                1124689999999999998888


Q ss_pred             CEEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceE
Q 014345          102 MAIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCA  172 (426)
Q Consensus       102 ~rIrk~d--~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~~  172 (426)
                      +.|+.+|  .+. +.++..... .         ..........++ +.++|.++++-..++.|+.++.....+.
T Consensus       271 ~~i~lwd~~~~~~~~~~~~~~~-~---------~~~~~~~v~~~~-~s~~g~~l~~g~~dg~i~vwd~~~~~~~  333 (380)
T 3iz6_a          271 GTCRLFDMRTGHQLQVYNREPD-R---------NDNELPIVTSVA-FSISGRLLFAGYSNGDCYVWDTLLAEMV  333 (380)
T ss_dssp             SCEEEEETTTTEEEEEECCCCS-S---------SCCSSCSCSEEE-ECSSSSEEEEECTTSCEEEEETTTCCEE
T ss_pred             CeEEEEECCCCcEEEEeccccc-c---------cccccCceEEEE-ECCCCCEEEEEECCCCEEEEECCCCceE
Confidence            9999999  333 333322110 0         011222346777 5788888888888999999997655443

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=94.23  E-value=0.74  Score=45.10  Aligned_cols=115  Identities=14%  Similarity=0.126  Sum_probs=74.9

Q ss_pred             CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCC
Q 014345           22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN  101 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N  101 (426)
                      .-.+|+++++|.++++-...+.|..++..+..  .+..+.       |+         -..-..|++.++|+.+++-..+
T Consensus       152 ~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~--~~~~~~-------~h---------~~~V~~v~~~p~~~~l~s~s~D  213 (410)
T 1vyh_C          152 SVQDISFDHSGKLLASCSADMTIKLWDFQGFE--CIRTMH-------GH---------DHNVSSVSIMPNGDHIVSASRD  213 (410)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCCCEEETTSSC--EEECCC-------CC---------SSCEEEEEECSSSSEEEEEETT
T ss_pred             cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc--eeEEEc-------CC---------CCCEEEEEEeCCCCEEEEEeCC
Confidence            35678888888877777777778777775321  111111       11         1124678999999988887788


Q ss_pred             CEEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceE
Q 014345          102 MAIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCA  172 (426)
Q Consensus       102 ~rIrk~d--~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~~  172 (426)
                      +.|+.++  .+. +.++.+..                 ..-..++ ..+++.++++-...+.|+.+++....+.
T Consensus       214 ~~i~~wd~~~~~~~~~~~~h~-----------------~~v~~~~-~~~~g~~l~s~s~D~~v~vwd~~~~~~~  269 (410)
T 1vyh_C          214 KTIKMWEVQTGYCVKTFTGHR-----------------EWVRMVR-PNQDGTLIASCSNDQTVRVWVVATKECK  269 (410)
T ss_dssp             SEEEEEETTTCCEEEEEECCS-----------------SCEEEEE-ECTTSSEEEEEETTSCEEEEETTTCCEE
T ss_pred             CeEEEEECCCCcEEEEEeCCC-----------------ccEEEEE-ECCCCCEEEEEcCCCeEEEEECCCCcee
Confidence            9999999  343 44554321                 0123455 5677888887777889999988765543

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=94.15  E-value=2.4  Score=38.89  Aligned_cols=110  Identities=13%  Similarity=0.035  Sum_probs=68.7

Q ss_pred             CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCC
Q 014345           22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN  101 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N  101 (426)
                      ...+++++++|.++++-..++.|..++.....  .+..+...                 .....++++++|..+++-...
T Consensus       220 ~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~--~~~~~~~~-----------------~~~~~~~~~~~~~~l~~~~~~  280 (369)
T 3zwl_B          220 SISDMQFSPDLTYFITSSRDTNSFLVDVSTLQ--VLKKYETD-----------------CPLNTAVITPLKEFIILGGGQ  280 (369)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTTCC--EEEEEECS-----------------SCEEEEEECSSSSEEEEEECC
T ss_pred             ceeEEEECCCCCEEEEecCCceEEEEECCCCc--eeeeecCC-----------------CCceeEEecCCCceEEEeecC
Confidence            46789999999877777778899999886421  12222111                 124578888888766554444


Q ss_pred             C--------------EEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEE
Q 014345          102 M--------------AIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREI  164 (426)
Q Consensus       102 ~--------------rIrk~d--~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I  164 (426)
                      +              .|+.++  .+. +.++.+.                 -.....++ +.+++.++++-...+.|+.+
T Consensus       281 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-----------------~~~v~~~~-~s~~~~~l~s~~~dg~v~iw  342 (369)
T 3zwl_B          281 EAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGH-----------------FGPLNTVA-ISPQGTSYASGGEDGFIRLH  342 (369)
T ss_dssp             C-------------CEEEEEETTTCCEEEEEECC-----------------SSCEEEEE-ECTTSSEEEEEETTSEEEEE
T ss_pred             CCceEEEEecCCCcceeEEEecCCCcchhheecc-----------------cCcEEEEE-ECCCCCEEEEEcCCCeEEEE
Confidence            3              566666  222 2333221                 11345677 56778777777778899988


Q ss_pred             EcCC
Q 014345          165 QLHF  168 (426)
Q Consensus       165 ~l~~  168 (426)
                      ++..
T Consensus       343 ~~~~  346 (369)
T 3zwl_B          343 HFEK  346 (369)
T ss_dssp             EECH
T ss_pred             ECcc
Confidence            8764

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=94.01  E-value=1.1  Score=42.41  Aligned_cols=139  Identities=16%  Similarity=0.074  Sum_probs=76.6

Q ss_pred             CceEEEEcCCCcEEEEECCC---CeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEE
Q 014345           22 EPYSVEVLPGGELLILDSAN---SNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIAD   98 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n---~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVAD   98 (426)
                      ...+++++++|.++++-...   +.|..++.....  .+..+.+......-. -+  ..+.-.....|+++++|.++++-
T Consensus       235 ~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~--~~~~~~~~~~~~~~~-~~--~~~~~~~v~~~~~~~~~~~l~~~  309 (397)
T 1sq9_A          235 SIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGE--RIGSLSVPTHSSQAS-LG--EFAHSSWVMSLSFNDSGETLCSA  309 (397)
T ss_dssp             CEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCC--EEEEECBC---------C--CBSBSSCEEEEEECSSSSEEEEE
T ss_pred             ccceEEECCCCCEEEEEecCCCCceEEEEECCCCc--ccceeccCccccccc-cc--ccccCCcEEEEEECCCCCEEEEE
Confidence            57899999999977776666   789999876321  223332210000000 00  00011235689999999988887


Q ss_pred             CCCCEEEEEc--CCC-cEEEeCCccCCCCCC----CCCCc--ccccCCCCCeeEEECCCC----------eEEEEECCCC
Q 014345           99 TMNMAIRKIS--DSG-VTTIAGGKWGRGGGH----VDGPS--EDAKFSNDFDVVYIGSSC----------SLLVIDRGNR  159 (426)
Q Consensus        99 t~N~rIrk~d--~g~-VstIaGg~~g~~~G~----~dG~~--~~a~f~~P~gIa~vd~~G----------~LYVaDsgN~  159 (426)
                      ..++.|+.++  .+. +.++......  .++    ..|..  ....-.....+++ .+++          .++++-..++
T Consensus       310 ~~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~v~~~~~-~~~g~~~~~~~~~~~~l~s~~~dg  386 (397)
T 1sq9_A          310 GWDGKLRFWDVKTKERITTLNMHCDD--IEIEEDILAVDEHGDSLAEPGVFDVKF-LKKGWRSGMGADLNESLCCVCLDR  386 (397)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECCGGG--CSSGGGCCCBCTTSCBCSSCCEEEEEE-ECTTTSBSTTCTTSCEEEEEETTT
T ss_pred             eCCCeEEEEEcCCCceeEEEecccCc--ccchhhhhccccccccccCCceeEEEe-ccccccccccccccceEEEecCCC
Confidence            7889999999  333 4455411000  000    00000  0000123467774 5665          6777766788


Q ss_pred             eEEEEEcCC
Q 014345          160 AIREIQLHF  168 (426)
Q Consensus       160 rIr~I~l~~  168 (426)
                      .|+.+++..
T Consensus       387 ~i~iw~~~~  395 (397)
T 1sq9_A          387 SIRWFREAG  395 (397)
T ss_dssp             EEEEEEEEC
T ss_pred             cEEEEEcCC
Confidence            999888653

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=94.00  E-value=1.4  Score=42.09  Aligned_cols=109  Identities=11%  Similarity=0.130  Sum_probs=69.1

Q ss_pred             CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCC
Q 014345           22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN  101 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N  101 (426)
                      .-.++++.++|+++++-...+.|+.++....   .........             ........+++.++|.+.++-..+
T Consensus       242 ~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~---~~~~~~~~~-------------~~~~~~~~~~~s~~g~~l~~g~~d  305 (354)
T 2pbi_B          242 DVNSVRYYPSGDAFASGSDDATCRLYDLRAD---REVAIYSKE-------------SIIFGASSVDFSLSGRLLFAGYND  305 (354)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEEEECCT-------------TCCSCEEEEEECTTSSEEEEEETT
T ss_pred             CeEEEEEeCCCCEEEEEeCCCeEEEEECCCC---cEEEEEcCC-------------CcccceeEEEEeCCCCEEEEEECC
Confidence            3567888888887777777778888877532   111111110             001224578999999988887778


Q ss_pred             CEEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEE
Q 014345          102 MAIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREI  164 (426)
Q Consensus       102 ~rIrk~d--~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I  164 (426)
                      +.|+.++  .+. +.++.+-.                 .....|+ +.++|.++++-...+.|+.+
T Consensus       306 ~~i~vwd~~~~~~~~~l~~h~-----------------~~v~~l~-~spdg~~l~sgs~D~~v~vW  353 (354)
T 2pbi_B          306 YTINVWDVLKGSRVSILFGHE-----------------NRVSTLR-VSPDGTAFCSGSWDHTLRVW  353 (354)
T ss_dssp             SCEEEEETTTCSEEEEECCCS-----------------SCEEEEE-ECTTSSCEEEEETTSEEEEE
T ss_pred             CcEEEEECCCCceEEEEECCC-----------------CcEEEEE-ECCCCCEEEEEcCCCCEEec
Confidence            8899998  444 44443310                 1245677 57788777777677888765

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=93.93  E-value=1  Score=43.68  Aligned_cols=113  Identities=12%  Similarity=0.041  Sum_probs=73.9

Q ss_pred             ceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCCC
Q 014345           23 PYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNM  102 (426)
Q Consensus        23 P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N~  102 (426)
                      -.+++++++|.++++-...+.|..++.....  .+..+.|.                -..-..|++.++|..+++-..++
T Consensus       126 v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~--~~~~~~~h----------------~~~v~~~~~~p~~~~l~s~s~d~  187 (393)
T 1erj_A          126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRK--IVMILQGH----------------EQDIYSLDYFPSGDKLVSGSGDR  187 (393)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTTE--EEEEECCC----------------SSCEEEEEECTTSSEEEEEETTS
T ss_pred             EEEEEECCCCCEEEEEcCCCeEEEEECCCCc--EEEEEccC----------------CCCEEEEEEcCCCCEEEEecCCC
Confidence            4689999999988887788899999987421  12222222                11246789999999888877889


Q ss_pred             EEEEEc-C-CCc-EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCce
Q 014345          103 AIRKIS-D-SGV-TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDC  171 (426)
Q Consensus       103 rIrk~d-~-g~V-stIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~  171 (426)
                      .|+.++ . +.. .++...                  .....+++...++.++++-..++.|+.+++....+
T Consensus       188 ~v~iwd~~~~~~~~~~~~~------------------~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~  241 (393)
T 1erj_A          188 TVRIWDLRTGQCSLTLSIE------------------DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFL  241 (393)
T ss_dssp             EEEEEETTTTEEEEEEECS------------------SCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCE
T ss_pred             cEEEEECCCCeeEEEEEcC------------------CCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcE
Confidence            999998 3 332 222211                  01344554333777777777778888888765443

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=93.89  E-value=2.3  Score=39.07  Aligned_cols=123  Identities=11%  Similarity=-0.028  Sum_probs=69.8

Q ss_pred             CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCC
Q 014345           22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN  101 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N  101 (426)
                      ...+++++++|+++++-...+.|..++....   ........                -.....++++++|..+++-..+
T Consensus        76 ~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~----------------~~~v~~~~~~~~~~~l~~~~~~  136 (369)
T 3zwl_B           76 TIWSIDVDCFTKYCVTGSADYSIKLWDVSNG---QCVATWKS----------------PVPVKRVEFSPCGNYFLAILDN  136 (369)
T ss_dssp             CEEEEEECTTSSEEEEEETTTEEEEEETTTC---CEEEEEEC----------------SSCEEEEEECTTSSEEEEEECC
T ss_pred             cEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---cEEEEeec----------------CCCeEEEEEccCCCEEEEecCC
Confidence            4678889988887777777888988887642   22222111                1125789999999877776666


Q ss_pred             -----CEEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCC
Q 014345          102 -----MAIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHF  168 (426)
Q Consensus       102 -----~rIrk~d--~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~  168 (426)
                           +.|+.++  .+. ...+....... ...   ............++ +.+++.++++-..++.|+.+++..
T Consensus       137 ~~~~~g~i~~~d~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~-~~~~~~~l~~~~~dg~i~i~d~~~  206 (369)
T 3zwl_B          137 VMKNPGSINIYEIERDSATHELTKVSEEP-IHK---IITHEGLDAATVAG-WSTKGKYIIAGHKDGKISKYDVSN  206 (369)
T ss_dssp             BTTBCCEEEEEEEEECTTTCCEEEECSSC-SEE---EECCTTCCCEEEEE-ECGGGCEEEEEETTSEEEEEETTT
T ss_pred             ccCCCCEEEEEEecCCccceeecccccce-eee---ccCCcCccceeEEE-EcCCCCEEEEEcCCCEEEEEECCC
Confidence                 7888887  222 21111100000 000   00000011345566 456666666555678888888775

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=93.83  E-value=0.58  Score=45.85  Aligned_cols=115  Identities=14%  Similarity=0.182  Sum_probs=76.9

Q ss_pred             CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCC
Q 014345           22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN  101 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N  101 (426)
                      ....+++.+++.++++-...+.|..++.....  ...++.|.                -..-..|+++++|+++++-..+
T Consensus       110 ~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~--~~~~l~~h----------------~~~V~~v~~~~~~~~l~sgs~D  171 (410)
T 1vyh_C          110 PVTRVIFHPVFSVMVSASEDATIKVWDYETGD--FERTLKGH----------------TDSVQDISFDHSGKLLASCSAD  171 (410)
T ss_dssp             CEEEEEECSSSSEEEEEESSSCEEEEETTTCC--CCEEECCC----------------SSCEEEEEECTTSSEEEEEETT
T ss_pred             cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc--EEEEEecc----------------CCcEEEEEEcCCCCEEEEEeCC
Confidence            35689999999998888888999999987421  12333222                1124679999999988887778


Q ss_pred             CEEEEEc-CC-C-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceE
Q 014345          102 MAIRKIS-DS-G-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCA  172 (426)
Q Consensus       102 ~rIrk~d-~g-~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~~  172 (426)
                      +.|+.++ .+ . +.++.+-        .         ..-..++ +.+++.++++-...+.|+.+++....+.
T Consensus       172 ~~i~iwd~~~~~~~~~~~~h--------~---------~~V~~v~-~~p~~~~l~s~s~D~~i~~wd~~~~~~~  227 (410)
T 1vyh_C          172 MTIKLWDFQGFECIRTMHGH--------D---------HNVSSVS-IMPNGDHIVSASRDKTIKMWEVQTGYCV  227 (410)
T ss_dssp             SCCCEEETTSSCEEECCCCC--------S---------SCEEEEE-ECSSSSEEEEEETTSEEEEEETTTCCEE
T ss_pred             CeEEEEeCCCCceeEEEcCC--------C---------CCEEEEE-EeCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence            8888888 32 2 2222221        0         1234566 4667777777777888998888766553

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=93.73  E-value=1  Score=48.32  Aligned_cols=120  Identities=9%  Similarity=0.011  Sum_probs=75.4

Q ss_pred             CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCC
Q 014345           22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN  101 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N  101 (426)
                      ...+|+.|++|.|||+-.  +.|.+++..+.   ....+.... .     .+    ...+...+|+.|++|+|||+-.++
T Consensus       451 ~v~~i~~d~~g~lwigt~--~Gl~~~~~~~~---~~~~~~~~~-~-----~~----~~~~~i~~i~~d~~g~lWigt~~~  515 (781)
T 3v9f_A          451 DVRVFYEDKNKKIWIGTH--AGVFVIDLASK---KVIHHYDTS-N-----SQ----LLENFVRSIAQDSEGRFWIGTFGG  515 (781)
T ss_dssp             CEEEEEECTTSEEEEEET--TEEEEEESSSS---SCCEEECTT-T-----SS----CSCSCEEEEEECTTCCEEEEESSS
T ss_pred             eEEEEEECCCCCEEEEEC--CceEEEeCCCC---eEEecccCc-c-----cc----cccceeEEEEEcCCCCEEEEEcCC
Confidence            567889999999999875  57999988742   333332110 0     00    012457789999999999997644


Q ss_pred             CEEEEEc-CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceE
Q 014345          102 MAIRKIS-DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCA  172 (426)
Q Consensus       102 ~rIrk~d-~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~~  172 (426)
                      + |.+++ +.+ +..+.. .        .+..    -....+|+ .|.+|.|||+-. ++.|.+++.......
T Consensus       516 G-l~~~~~~~~~~~~~~~-~--------~~l~----~~~i~~i~-~d~~g~lWi~T~-~Glv~~~d~~~~~~~  572 (781)
T 3v9f_A          516 G-VGIYTPDMQLVRKFNQ-Y--------EGFC----SNTINQIY-RSSKGQMWLATG-EGLVCFPSARNFDYQ  572 (781)
T ss_dssp             C-EEEECTTCCEEEEECT-T--------TTCS----CSCEEEEE-ECTTSCEEEEET-TEEEEESCTTTCCCE
T ss_pred             C-EEEEeCCCCeEEEccC-C--------CCCC----CCeeEEEE-ECCCCCEEEEEC-CCceEEECCCCCcEE
Confidence            4 77788 333 443321 0        0110    12345666 789999999986 454488887765443

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=93.70  E-value=2.4  Score=39.90  Aligned_cols=133  Identities=11%  Similarity=0.019  Sum_probs=77.4

Q ss_pred             CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCC
Q 014345           22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN  101 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N  101 (426)
                      ...++++.++| ++++-..++.|..++.....  .+..+.+.    .++..      .-.....|+++++|.++++-..+
T Consensus       188 ~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~--~~~~~~~~----~~h~~------~~~~i~~i~~~~~~~~l~~~~~d  254 (397)
T 1sq9_A          188 FATSVDISERG-LIATGFNNGTVQISELSTLR--PLYNFESQ----HSMIN------NSNSIRSVKFSPQGSLLAIAHDS  254 (397)
T ss_dssp             CCCEEEECTTS-EEEEECTTSEEEEEETTTTE--EEEEEECC----C---C------CCCCEEEEEECSSTTEEEEEEEE
T ss_pred             CceEEEECCCc-eEEEEeCCCcEEEEECCCCc--eeEEEecc----ccccc------cCCccceEEECCCCCEEEEEecC
Confidence            57899999999 88888888999999987421  12223220    00000      01125789999999987776666


Q ss_pred             ---CEEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceE
Q 014345          102 ---MAIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCA  172 (426)
Q Consensus       102 ---~rIrk~d--~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~~  172 (426)
                         +.|+.++  .+. +.++.+..... ......   -+.-.....++ +.+++.++++-..++.|+.+++....+.
T Consensus       255 ~~~g~i~i~d~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~v~~~~-~~~~~~~l~~~~~dg~i~iwd~~~~~~~  326 (397)
T 1sq9_A          255 NSFGCITLYETEFGERIGSLSVPTHSS-QASLGE---FAHSSWVMSLS-FNDSGETLCSAGWDGKLRFWDVKTKERI  326 (397)
T ss_dssp             TTEEEEEEEETTTCCEEEEECBC---------CC---BSBSSCEEEEE-ECSSSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             CCCceEEEEECCCCcccceeccCcccc-cccccc---cccCCcEEEEE-ECCCCCEEEEEeCCCeEEEEEcCCCcee
Confidence               7899999  344 34443310000 000000   00112345666 4667777777667888999988765543

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=93.60  E-value=3.3  Score=38.36  Aligned_cols=112  Identities=8%  Similarity=0.084  Sum_probs=71.4

Q ss_pred             ceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCCC
Q 014345           23 PYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNM  102 (426)
Q Consensus        23 P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N~  102 (426)
                      -..+++.++|+++++-...+.|..++.....  .+..+.+..                ..-..|++.+++.++++-..++
T Consensus        58 v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~--~~~~~~~h~----------------~~v~~~~~~~~~~~l~sgs~D~  119 (304)
T 2ynn_A           58 VRAGKFIARKNWIIVGSDDFRIRVFNYNTGE--KVVDFEAHP----------------DYIRSIAVHPTKPYVLSGSDDL  119 (304)
T ss_dssp             EEEEEEEGGGTEEEEEETTSEEEEEETTTCC--EEEEEECCS----------------SCEEEEEECSSSSEEEEEETTS
T ss_pred             EEEEEEeCCCCEEEEECCCCEEEEEECCCCc--EEEEEeCCC----------------CcEEEEEEcCCCCEEEEECCCC
Confidence            4567788888877777778888888876421  222332221                1246799999999888877788


Q ss_pred             EEEEEc-CCC--c-EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCC
Q 014345          103 AIRKIS-DSG--V-TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFD  169 (426)
Q Consensus       103 rIrk~d-~g~--V-stIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~  169 (426)
                      .|+.++ ..+  . .++.+..                 ..-..+++.+.++.++++-...+.|+.+++...
T Consensus       120 ~v~lWd~~~~~~~~~~~~~h~-----------------~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~  173 (304)
T 2ynn_A          120 TVKLWNWENNWALEQTFEGHE-----------------HFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQS  173 (304)
T ss_dssp             CEEEEEGGGTTEEEEEECCCC-----------------SCEEEEEECTTCTTEEEEEETTSEEEEEETTCS
T ss_pred             eEEEEECCCCcchhhhhcccC-----------------CcEEEEEECCCCCCEEEEEeCCCeEEEEECCCC
Confidence            899998 322  2 2332210                 123456643335677777777788888887543

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=93.47  E-value=3  Score=38.04  Aligned_cols=118  Identities=14%  Similarity=0.075  Sum_probs=69.7

Q ss_pred             CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCC
Q 014345           22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN  101 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N  101 (426)
                      ...+|+++++|+++++-...+.|..++.....  .+..+.+.                 .....+++.+++.++++-. +
T Consensus       217 ~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~--~~~~~~~~-----------------~~v~~~~~~~~~~~~~~~~-d  276 (340)
T 4aow_A          217 YLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK--HLYTLDGG-----------------DIINALCFSPNRYWLCAAT-G  276 (340)
T ss_dssp             CEEEEEECTTSSEEEEEETTCEEEEEETTTTE--EEEEEECS-----------------SCEEEEEECSSSSEEEEEE-T
T ss_pred             cEEEEEECCCCCEEEEEeCCCeEEEEEeccCc--eeeeecCC-----------------ceEEeeecCCCCceeeccC-C
Confidence            45788899999888877778888888876421  12222211                 1235677777777665543 6


Q ss_pred             CEEEEEc-CCC--cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCC
Q 014345          102 MAIRKIS-DSG--VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHF  168 (426)
Q Consensus       102 ~rIrk~d-~g~--VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~  168 (426)
                      +.|+.++ .+.  +..+.......        .....-..-..|+ +.++|.++++-..++.|+.+++..
T Consensus       277 ~~i~iwd~~~~~~~~~~~~~~~~~--------~~~~h~~~v~~l~-~s~dg~~l~sgs~Dg~v~iW~~~t  337 (340)
T 4aow_A          277 PSIKIWDLEGKIIVDELKQEVIST--------SSKAEPPQCTSLA-WSADGQTLFAGYTDNLVRVWQVTI  337 (340)
T ss_dssp             TEEEEEETTTTEEEEEECCC---------------CCCCCEEEEE-ECTTSSEEEEEETTSCEEEEEEEC
T ss_pred             CEEEEEECCCCeEEEeccccceee--------eccCCCCCEEEEE-ECCCCCEEEEEeCCCEEEEEeCCC
Confidence            7888888 433  22332211000        0001112235677 577888888777788999888654

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=93.47  E-value=1.5  Score=40.77  Aligned_cols=113  Identities=10%  Similarity=-0.034  Sum_probs=68.2

Q ss_pred             CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCC
Q 014345           22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN  101 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N  101 (426)
                      ...+++++++|+++++-...+.|..++...   +......-.    .++         -.....+++.++|+++++-..+
T Consensus        54 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~---~~~~~~~~~----~~~---------~~~v~~~~~~~~~~~l~~~~~d  117 (372)
T 1k8k_C           54 QVTGVDWAPDSNRIVTCGTDRNAYVWTLKG---RTWKPTLVI----LRI---------NRAARCVRWAPNEKKFAVGSGS  117 (372)
T ss_dssp             CEEEEEEETTTTEEEEEETTSCEEEEEEET---TEEEEEEEC----CCC---------SSCEEEEEECTTSSEEEEEETT
T ss_pred             cccEEEEeCCCCEEEEEcCCCeEEEEECCC---CeeeeeEEe----ecC---------CCceeEEEECCCCCEEEEEeCC
Confidence            467899999888777766777888887653   221111100    000         1135789999999877666667


Q ss_pred             CEEEEEc--CCCc----EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcC
Q 014345          102 MAIRKIS--DSGV----TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLH  167 (426)
Q Consensus       102 ~rIrk~d--~g~V----stIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~  167 (426)
                      +.|+.++  .+..    ..+...                .-.....++ +.+++.++++-..++.|+.++..
T Consensus       118 ~~v~i~d~~~~~~~~~~~~~~~~----------------~~~~i~~~~-~~~~~~~l~~~~~dg~i~~~d~~  172 (372)
T 1k8k_C          118 RVISICYFEQENDWWVCKHIKKP----------------IRSTVLSLD-WHPNSVLLAAGSCDFKCRIFSAY  172 (372)
T ss_dssp             SSEEEEEEETTTTEEEEEEECTT----------------CCSCEEEEE-ECTTSSEEEEEETTSCEEEEECC
T ss_pred             CEEEEEEecCCCcceeeeeeecc----------------cCCCeeEEE-EcCCCCEEEEEcCCCCEEEEEcc
Confidence            7777766  3331    222111                011345666 46677766666667888888853

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=93.38  E-value=1.3  Score=41.61  Aligned_cols=111  Identities=12%  Similarity=-0.016  Sum_probs=72.1

Q ss_pred             CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCC
Q 014345           22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN  101 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N  101 (426)
                      ....++++++|.++++-...+.|..++.....  .+..+.+.                -.....+++.++| ++++-..+
T Consensus       249 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~----------------~~~i~~~~~~~~~-~l~~~~~d  309 (425)
T 1r5m_A          249 PISVLEFNDTNKLLLSASDDGTLRIWHGGNGN--SQNCFYGH----------------SQSIVSASWVGDD-KVISCSMD  309 (425)
T ss_dssp             CEEEEEEETTTTEEEEEETTSCEEEECSSSBS--CSEEECCC----------------SSCEEEEEEETTT-EEEEEETT
T ss_pred             ceEEEEECCCCCEEEEEcCCCEEEEEECCCCc--cceEecCC----------------CccEEEEEECCCC-EEEEEeCC
Confidence            45788999998877777778889888876321  12233211                1124688999988 66666678


Q ss_pred             CEEEEEc-C-CC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCC
Q 014345          102 MAIRKIS-D-SG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFD  169 (426)
Q Consensus       102 ~rIrk~d-~-g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~  169 (426)
                      +.|+.++ . +. +.++.+..                 .....++ +.+++.++++-..++.|+.+++...
T Consensus       310 ~~i~i~d~~~~~~~~~~~~~~-----------------~~i~~~~-~s~~~~~l~~~~~dg~i~i~~~~~~  362 (425)
T 1r5m_A          310 GSVRLWSLKQNTLLALSIVDG-----------------VPIFAGR-ISQDGQKYAVAFMDGQVNVYDLKKL  362 (425)
T ss_dssp             SEEEEEETTTTEEEEEEECTT-----------------CCEEEEE-ECTTSSEEEEEETTSCEEEEECHHH
T ss_pred             CcEEEEECCCCcEeEecccCC-----------------ccEEEEE-EcCCCCEEEEEECCCeEEEEECCCC
Confidence            8999999 3 33 23333210                 1245666 5677777777667788999987643

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=93.37  E-value=2.8  Score=40.46  Aligned_cols=117  Identities=16%  Similarity=0.223  Sum_probs=70.7

Q ss_pred             CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcC-CCCEEEEECC
Q 014345           22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD-RGNIYIADTM  100 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~-dG~LYVADt~  100 (426)
                      .-.++++.++|..+++-...+.|..++...   +........                -.....+++.+ +|.++++-..
T Consensus       167 ~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~---~~~~~~~~~----------------~~~v~~~~~~~~~~~~l~~~s~  227 (393)
T 1erj_A          167 DIYSLDYFPSGDKLVSGSGDRTVRIWDLRT---GQCSLTLSI----------------EDGVTTVAVSPGDGKYIAAGSL  227 (393)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTT---TEEEEEEEC----------------SSCEEEEEECSTTCCEEEEEET
T ss_pred             CEEEEEEcCCCCEEEEecCCCcEEEEECCC---CeeEEEEEc----------------CCCcEEEEEECCCCCEEEEEcC
Confidence            356788888888777777778888888764   222222111                01245688887 7888888777


Q ss_pred             CCEEEEEc--CCCc-EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCC
Q 014345          101 NMAIRKIS--DSGV-TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHF  168 (426)
Q Consensus       101 N~rIrk~d--~g~V-stIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~  168 (426)
                      ++.|+.++  .+.. ..+..... ...+         .-.....|+ +.+++.++++-...+.|+.+++..
T Consensus       228 d~~v~iwd~~~~~~~~~~~~~~~-~~~~---------h~~~v~~v~-~~~~g~~l~s~s~d~~v~~wd~~~  287 (393)
T 1erj_A          228 DRAVRVWDSETGFLVERLDSENE-SGTG---------HKDSVYSVV-FTRDGQSVVSGSLDRSVKLWNLQN  287 (393)
T ss_dssp             TSCEEEEETTTCCEEEEEC-------CC---------CSSCEEEEE-ECTTSSEEEEEETTSEEEEEEC--
T ss_pred             CCcEEEEECCCCcEEEeeccccc-CCCC---------CCCCEEEEE-ECCCCCEEEEEeCCCEEEEEECCC
Confidence            88899998  3332 33321100 0001         112345677 577787777777788999998764

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=93.36  E-value=1.3  Score=43.64  Aligned_cols=117  Identities=13%  Similarity=0.124  Sum_probs=71.7

Q ss_pred             CCceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccc--cEEEecCCCCcccccCCcccccccCCcceEEEcCC---CCEE
Q 014345           21 IEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSR--PKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDR---GNIY   95 (426)
Q Consensus        21 ~~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~--v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~d---G~LY   95 (426)
                      ..+.+|+++++|.++++-...+.|+.++........  ...+.       ++         -.....|++.++   +.++
T Consensus       150 ~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~-------~h---------~~~v~~~~~sp~~~~~~~l  213 (450)
T 2vdu_B          150 KRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPIL-------GH---------VSMLTDVHLIKDSDGHQFI  213 (450)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSE-------EC---------SSCEEEEEEEECTTSCEEE
T ss_pred             CCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeee-------cc---------cCceEEEEEcCCCCCCcEE
Confidence            357899999998865555567889888765321000  00111       11         223578999998   8766


Q ss_pred             EEECCCCEEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCce
Q 014345           96 IADTMNMAIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDC  171 (426)
Q Consensus        96 VADt~N~rIrk~d--~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~  171 (426)
                      ++-..++.|+.++  .+. +.++..+.                -.....+++ . ++.++++-...+.|+.+++....+
T Consensus       214 ~s~~~d~~i~vwd~~~~~~~~~~~~~h----------------~~~v~~~~~-s-d~~~l~s~~~d~~v~vwd~~~~~~  274 (450)
T 2vdu_B          214 ITSDRDEHIKISHYPQCFIVDKWLFGH----------------KHFVSSICC-G-KDYLLLSAGGDDKIFAWDWKTGKN  274 (450)
T ss_dssp             EEEETTSCEEEEEESCTTCEEEECCCC----------------SSCEEEEEE-C-STTEEEEEESSSEEEEEETTTCCE
T ss_pred             EEEcCCCcEEEEECCCCceeeeeecCC----------------CCceEEEEE-C-CCCEEEEEeCCCeEEEEECCCCcE
Confidence            6655678888888  344 33332110                113466774 4 677777666788999998876543

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=93.32  E-value=0.9  Score=48.61  Aligned_cols=121  Identities=17%  Similarity=0.188  Sum_probs=69.3

Q ss_pred             cccCCcceEEEcC-CCCEEEEECCC---------------------CEEEEEc-CC---C-------cEEEeCCccCCCC
Q 014345           78 ARMNHPKGLTVDD-RGNIYIADTMN---------------------MAIRKIS-DS---G-------VTTIAGGKWGRGG  124 (426)
Q Consensus        78 A~Ln~P~GIaVd~-dG~LYVADt~N---------------------~rIrk~d-~g---~-------VstIaGg~~g~~~  124 (426)
                      ..|..|.||++++ +|.||||-+.|                     +.|.++. ++   .       +..++|.......
T Consensus       381 T~f~RpEgi~~~p~~g~vY~a~Tn~~~rg~~~~~~~~~np~~~n~~G~I~r~~~~~~d~~a~~f~w~~~v~~g~p~~~~~  460 (592)
T 3zwu_A          381 TRMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAG  460 (592)
T ss_dssp             CCEECEEEEEECTTTCCEEEEECCBTTTTSTTCCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTT
T ss_pred             EEEeccceeEEcCCCCEEEEEecCCcccccCcccccccccccCCcceeEEEEecCCCccccceeEEEEEEeccCcccccc
Confidence            4689999999996 79999998753                     4688775 21   1       1122232211100


Q ss_pred             ---CCCCCCcccccCCCCCeeEEECCCCeEEEEEC------------CCCeEEEEEcCCCceEeecCC---CCcceEEEE
Q 014345          125 ---GHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDR------------GNRAIREIQLHFDDCAYQYGS---SFPLGIAVL  186 (426)
Q Consensus       125 ---G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDs------------gN~rIr~I~l~~~~~~~~~~~---g~P~GIAv~  186 (426)
                         +..........|+.|-.|+ +++.|+|||+.-            +|+.+..+.+.......+...   .-.+|+++.
T Consensus       461 ~~~~~~~~~~~~~~f~~PDNL~-fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fs  539 (592)
T 3zwu_A          461 TPKGGSSNITPQNMFNSPDGLG-FDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFS  539 (592)
T ss_dssp             SGGGCCTTCCTTTCCCCEEEEE-ECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEEC
T ss_pred             cccccccccCCCCCccCCcceE-ECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeEC
Confidence               0011122344699999999 689999999864            356677776654443322111   123445544


Q ss_pred             ecCCceEEEEEEEecc
Q 014345          187 LAAGFFGYMLALLQRR  202 (426)
Q Consensus       187 ~g~g~~Gy~~a~lq~~  202 (426)
                      .-   ..+++...|++
T Consensus       540 pD---g~tlfvniQHP  552 (592)
T 3zwu_A          540 PD---QKTLFVGIQHP  552 (592)
T ss_dssp             TT---SSEEEEEEEST
T ss_pred             CC---CCEEEEEEECC
Confidence            21   12455566776

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=93.23  E-value=1.2  Score=43.07  Aligned_cols=69  Identities=16%  Similarity=0.206  Sum_probs=50.7

Q ss_pred             cceEEEcCCCCEEEEECCCCEEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCC
Q 014345           83 PKGLTVDDRGNIYIADTMNMAIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNR  159 (426)
Q Consensus        83 P~GIaVd~dG~LYVADt~N~rIrk~d--~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~  159 (426)
                      -..|++.++|+++++-..++.|+.+|  ++. +.++..+       +         -...++|+ +.++|.++++-+..+
T Consensus       272 V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~g-------H---------~~~V~~v~-fSpdg~~laS~S~D~  334 (365)
T 4h5i_A          272 ITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQA-------H---------SFAITEVT-ISPDSTYVASVSAAN  334 (365)
T ss_dssp             EEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTS-------S---------SSCEEEEE-ECTTSCEEEEEETTS
T ss_pred             eEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCc-------c---------cCCEEEEE-ECCCCCEEEEEeCCC
Confidence            46789999999888877788899999  333 3343221       1         11346788 588999999998899


Q ss_pred             eEEEEEcCC
Q 014345          160 AIREIQLHF  168 (426)
Q Consensus       160 rIr~I~l~~  168 (426)
                      .|+++++..
T Consensus       335 tvrvw~ip~  343 (365)
T 4h5i_A          335 TIHIIKLPL  343 (365)
T ss_dssp             EEEEEECCT
T ss_pred             eEEEEEcCC
Confidence            999999753

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=92.81  E-value=7.8  Score=38.00  Aligned_cols=115  Identities=15%  Similarity=0.155  Sum_probs=64.8

Q ss_pred             CceEEEEcCCCc-EEEEECC--CCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCC-EEEE
Q 014345           22 EPYSVEVLPGGE-LLILDSA--NSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIA   97 (426)
Q Consensus        22 ~P~GIaVd~dG~-LYVaD~~--n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~-LYVA   97 (426)
                      ....++++|||. |+++...  +..|+.++..+   +....+.+..                .....+++.++|+ |+++
T Consensus       224 ~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~---~~~~~l~~~~----------------~~~~~~~~spdg~~l~~~  284 (415)
T 2hqs_A          224 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS---GQIRQVTDGR----------------SNNTEPTWFPDSQNLAFT  284 (415)
T ss_dssp             CEEEEEECTTSSEEEEEECTTSSCEEEEEETTT---CCEEECCCCS----------------SCEEEEEECTTSSEEEEE
T ss_pred             cccCEEEcCCCCEEEEEEecCCCceEEEEECCC---CCEEeCcCCC----------------CcccceEECCCCCEEEEE
Confidence            467889999998 5545432  45699998874   3333332210                1245788999997 5544


Q ss_pred             EC--CCCEEEEEc-CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCe-EEEEECC--CCeEEEEEcCCCc
Q 014345           98 DT--MNMAIRKIS-DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCS-LLVIDRG--NRAIREIQLHFDD  170 (426)
Q Consensus        98 Dt--~N~rIrk~d-~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~-LYVaDsg--N~rIr~I~l~~~~  170 (426)
                      ..  +..+|+.++ .++ +..+....                 .....++ +.++|. |+++...  ...|+.+++.+..
T Consensus       285 s~~~g~~~i~~~d~~~~~~~~l~~~~-----------------~~~~~~~-~spdG~~l~~~~~~~g~~~i~~~d~~~~~  346 (415)
T 2hqs_A          285 SDQAGRPQVYKVNINGGAPQRITWEG-----------------SQNQDAD-VSSDGKFMVMVSSNGGQQHIAKQDLATGG  346 (415)
T ss_dssp             ECTTSSCEEEEEETTSSCCEECCCSS-----------------SEEEEEE-ECTTSSEEEEEEECSSCEEEEEEETTTCC
T ss_pred             ECCCCCcEEEEEECCCCCEEEEecCC-----------------CcccCeE-ECCCCCEEEEEECcCCceEEEEEECCCCC
Confidence            42  234788888 333 44332210                 0123455 455554 5555443  3578888877655


Q ss_pred             eEe
Q 014345          171 CAY  173 (426)
Q Consensus       171 ~~~  173 (426)
                      +..
T Consensus       347 ~~~  349 (415)
T 2hqs_A          347 VQV  349 (415)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            543

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=92.76  E-value=2.4  Score=40.08  Aligned_cols=114  Identities=9%  Similarity=0.045  Sum_probs=70.4

Q ss_pred             CceEEEEcCCC-cEEEEECCCC---eEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcC-CCCEEE
Q 014345           22 EPYSVEVLPGG-ELLILDSANS---NLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD-RGNIYI   96 (426)
Q Consensus        22 ~P~GIaVd~dG-~LYVaD~~n~---rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~-dG~LYV   96 (426)
                      ...+++++++| .++++-...+   .|..++..... ..+..+.      .++         -.....|++.+ ++.+++
T Consensus       216 ~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~-~~~~~~~------~~~---------~~~v~~~~~s~~~~~~l~  279 (416)
T 2pm9_A          216 QLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN-TPLQTLN------QGH---------QKGILSLDWCHQDEHLLL  279 (416)
T ss_dssp             CEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT-SCSBCCC------SCC---------SSCEEEEEECSSCSSCEE
T ss_pred             ceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC-CCcEEee------cCc---------cCceeEEEeCCCCCCeEE
Confidence            46778888876 4666555555   77777765310 0011110      011         12356899998 888777


Q ss_pred             EECCCCEEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCC-eEEEEECCCCeEEEEEcCCC
Q 014345           97 ADTMNMAIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSC-SLLVIDRGNRAIREIQLHFD  169 (426)
Q Consensus        97 ADt~N~rIrk~d--~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G-~LYVaDsgN~rIr~I~l~~~  169 (426)
                      +-..++.|+.++  .+. +.++.+..                 .....++ +.+++ .++++-...+.|+.+++...
T Consensus       280 s~~~dg~v~~wd~~~~~~~~~~~~~~-----------------~~v~~~~-~s~~~~~~l~s~~~d~~i~iw~~~~~  338 (416)
T 2pm9_A          280 SSGRDNTVLLWNPESAEQLSQFPARG-----------------NWCFKTK-FAPEAPDLFACASFDNKIEVQTLQNL  338 (416)
T ss_dssp             EEESSSEEEEECSSSCCEEEEEECSS-----------------SCCCCEE-ECTTCTTEEEECCSSSEEEEEESCCC
T ss_pred             EEeCCCCEEEeeCCCCccceeecCCC-----------------CceEEEE-ECCCCCCEEEEEecCCcEEEEEccCC
Confidence            777789999999  333 34443311                 1245677 46666 78888878899999998753

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=92.75  E-value=2.3  Score=39.91  Aligned_cols=126  Identities=10%  Similarity=-0.056  Sum_probs=71.1

Q ss_pred             CceEEEEcCCCc-EEEEECCCCeEEEEeC----CCCcc-c---ccEEEecCCCCcccccCCcccccccCCcceEEEcCCC
Q 014345           22 EPYSVEVLPGGE-LLILDSANSNLYRISS----SLSLY-S---RPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRG   92 (426)
Q Consensus        22 ~P~GIaVd~dG~-LYVaD~~n~rI~kid~----dg~~~-g---~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG   92 (426)
                      ...+++++++|. ++++-..++.|..++.    ..... -   ....+.....+. ....     ..-.....|++.++|
T Consensus        47 ~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~~v~~~~~s~~~  120 (425)
T 1r5m_A           47 NIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALS-ASSG-----KTTNQVTCLAWSHDG  120 (425)
T ss_dssp             CCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------------CBCEEEEEECTTS
T ss_pred             ceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccccccccccccccc-cccc-----CCCCceEEEEEcCCC
Confidence            567999999998 7777777888888877    53110 0   112222111010 0000     001135689999999


Q ss_pred             CEEEEECCCCEEEEEc-CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCc
Q 014345           93 NIYIADTMNMAIRKIS-DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDD  170 (426)
Q Consensus        93 ~LYVADt~N~rIrk~d-~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~  170 (426)
                      +++++-..++.|+.++ ++. +..+.+..                 .....++ +.+++.++++-..++.|+.+++....
T Consensus       121 ~~l~~~~~dg~i~i~~~~~~~~~~~~~~~-----------------~~v~~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~  182 (425)
T 1r5m_A          121 NSIVTGVENGELRLWNKTGALLNVLNFHR-----------------APIVSVK-WNKDGTHIISMDVENVTILWNVISGT  182 (425)
T ss_dssp             SEEEEEETTSCEEEEETTSCEEEEECCCC-----------------SCEEEEE-ECTTSSEEEEEETTCCEEEEETTTTE
T ss_pred             CEEEEEeCCCeEEEEeCCCCeeeeccCCC-----------------ccEEEEE-ECCCCCEEEEEecCCeEEEEECCCCc
Confidence            8777766778899998 444 33433210                 1235566 45566554444456778888876544


Q ss_pred             e
Q 014345          171 C  171 (426)
Q Consensus       171 ~  171 (426)
                      +
T Consensus       183 ~  183 (425)
T 1r5m_A          183 V  183 (425)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=92.70  E-value=4.1  Score=42.67  Aligned_cols=112  Identities=6%  Similarity=0.041  Sum_probs=71.6

Q ss_pred             CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCC
Q 014345           22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN  101 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N  101 (426)
                      ...+|+++|+|.++++-..++.|..++....  ..+..+.+..                .....++++++|+.+++-..+
T Consensus        15 ~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~--~~~~~~~~~~----------------~~v~~~~~s~~~~~l~~~~~d   76 (814)
T 3mkq_A           15 RVKGIDFHPTEPWVLTTLYSGRVEIWNYETQ--VEVRSIQVTE----------------TPVRAGKFIARKNWIIVGSDD   76 (814)
T ss_dssp             CEEEEEECSSSSEEEEEETTSEEEEEETTTT--EEEEEEECCS----------------SCEEEEEEEGGGTEEEEEETT
T ss_pred             ceEEEEECCCCCEEEEEeCCCEEEEEECCCC--ceEEEEecCC----------------CcEEEEEEeCCCCEEEEEeCC
Confidence            5789999999997777667889999997642  1223333221                124679999999876666668


Q ss_pred             CEEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCC
Q 014345          102 MAIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFD  169 (426)
Q Consensus       102 ~rIrk~d--~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~  169 (426)
                      +.|+.++  .+. +.++.+..                 .....++ +.+++..+++-..++.|+.+++...
T Consensus        77 g~i~vw~~~~~~~~~~~~~~~-----------------~~v~~~~-~s~~~~~l~~~~~dg~i~vw~~~~~  129 (814)
T 3mkq_A           77 FRIRVFNYNTGEKVVDFEAHP-----------------DYIRSIA-VHPTKPYVLSGSDDLTVKLWNWENN  129 (814)
T ss_dssp             SEEEEEETTTCCEEEEEECCS-----------------SCEEEEE-ECSSSSEEEEEETTSEEEEEEGGGT
T ss_pred             CeEEEEECCCCcEEEEEecCC-----------------CCEEEEE-EeCCCCEEEEEcCCCEEEEEECCCC
Confidence            8999998  344 34443311                 1234566 4556654444445677777777654

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=92.70  E-value=2.3  Score=40.28  Aligned_cols=114  Identities=15%  Similarity=0.132  Sum_probs=70.9

Q ss_pred             CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCC
Q 014345           22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN  101 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N  101 (426)
                      .-..|+++++|.++++-...+.|..++.++... ........     |+         -..-..|++.++|+++++-..+
T Consensus        18 ~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~-~~~~~~~~-----~h---------~~~v~~~~~sp~g~~l~s~s~D   82 (345)
T 3fm0_A           18 RCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSW-ICKSVLSE-----GH---------QRTVRKVAWSPCGNYLASASFD   82 (345)
T ss_dssp             CEEEEEECTTSSCEEEEETTSCEEEEEEETTEE-EEEEEECS-----SC---------SSCEEEEEECTTSSEEEEEETT
T ss_pred             cEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcc-eeeeeecc-----cc---------CCcEEEEEECCCCCEEEEEECC
Confidence            356899999999888877888888887764210 01111111     11         1124679999999987777667


Q ss_pred             CEEEEEc--CCCc---EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCC
Q 014345          102 MAIRKIS--DSGV---TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHF  168 (426)
Q Consensus       102 ~rIrk~d--~g~V---stIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~  168 (426)
                      +.|+.++  .+..   .++.+-                 -.....|+ +.+++.++++-...+.|+.+++..
T Consensus        83 ~~v~iw~~~~~~~~~~~~~~~h-----------------~~~v~~v~-~sp~~~~l~s~s~D~~v~iwd~~~  136 (345)
T 3fm0_A           83 ATTCIWKKNQDDFECVTTLEGH-----------------ENEVKSVA-WAPSGNLLATCSRDKSVWVWEVDE  136 (345)
T ss_dssp             SCEEEEEECCC-EEEEEEECCC-----------------SSCEEEEE-ECTTSSEEEEEETTSCEEEEEECT
T ss_pred             CcEEEEEccCCCeEEEEEccCC-----------------CCCceEEE-EeCCCCEEEEEECCCeEEEEECCC
Confidence            7777776  3332   233221                 01235666 466777777776778888888764

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=92.67  E-value=1.9  Score=42.29  Aligned_cols=117  Identities=13%  Similarity=0.145  Sum_probs=73.8

Q ss_pred             CceEEEEcC-CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcC-CCCEEEEEC
Q 014345           22 EPYSVEVLP-GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD-RGNIYIADT   99 (426)
Q Consensus        22 ~P~GIaVd~-dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~-dG~LYVADt   99 (426)
                      .-++|++.| +++++++-...+.|..++.+...  ....+..     .|+ .        ..-.+|++.+ +++++++=.
T Consensus       121 ~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~--~~~~~~~-----~gH-~--------~~V~~l~f~p~~~~~l~s~s  184 (435)
T 4e54_B          121 RATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKD--KPTFIKG-----IGA-G--------GSITGLKFNPLNTNQFYASS  184 (435)
T ss_dssp             CEEEEEECSSCTTCEEEEETTSCEEEECSSCCS--CCEEECC-----CSS-S--------CCCCEEEECSSCTTEEEEEC
T ss_pred             CEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCC--ceeEEEc-----cCC-C--------CCEEEEEEeCCCCCEEEEEe
Confidence            357899998 56777777788899999876421  1122211     111 1        1236789986 688888877


Q ss_pred             CCCEEEEEc-CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCC
Q 014345          100 MNMAIRKIS-DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFD  169 (426)
Q Consensus       100 ~N~rIrk~d-~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~  169 (426)
                      .++.|+.+| .+. ..++......              -..-..++ +.+++.++++-..++.|+.+++.+.
T Consensus       185 ~D~~v~iwd~~~~~~~~~~~~~~~--------------~~~~~~~~-~~~~~~~l~~g~~dg~i~~wd~~~~  241 (435)
T 4e54_B          185 MEGTTRLQDFKGNILRVFASSDTI--------------NIWFCSLD-VSASSRMVVTGDNVGNVILLNMDGK  241 (435)
T ss_dssp             SSSCEEEEETTSCEEEEEECCSSC--------------SCCCCCEE-EETTTTEEEEECSSSBEEEEESSSC
T ss_pred             CCCEEEEeeccCCceeEEeccCCC--------------CccEEEEE-ECCCCCEEEEEeCCCcEeeeccCcc
Confidence            788999999 544 4444432110              01224556 4567777777777888998887654

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=92.62  E-value=0.8  Score=44.02  Aligned_cols=116  Identities=9%  Similarity=-0.011  Sum_probs=71.2

Q ss_pred             CceEEEEcCCCcEEEEECCCCeEEEEeCCCCccccc-EEEecCCCCcccccCCcccccccCCcceEEEcCCCC-EEEEEC
Q 014345           22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRP-KLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIADT   99 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v-~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~-LYVADt   99 (426)
                      .-.+|++.++|+++++-...+.|..++...   +.. ..+.+.                -...+.|++.+++. ++++-.
T Consensus       141 ~V~~v~~spdg~~l~sgs~dg~v~iwd~~~---~~~~~~~~~h----------------~~~v~~v~~s~~~~~~~~s~~  201 (357)
T 4g56_B          141 IVKTLSVFSDGTQAVSGGKDFSVKVWDLSQ---KAVLKSYNAH----------------SSEVNCVAACPGKDTIFLSCG  201 (357)
T ss_dssp             CEEEEEECSSSSEEEEEETTSCEEEEETTT---TEEEEEECCC----------------SSCEEEEEECTTCSSCEEEEE
T ss_pred             CEEEEEECCCCCEEEEEeCCCeEEEEECCC---CcEEEEEcCC----------------CCCEEEEEEccCCCceeeeec
Confidence            357889999999888777788899998864   222 222111                11246788888764 667766


Q ss_pred             CCCEEEEEc--CCCc-EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCce
Q 014345          100 MNMAIRKIS--DSGV-TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDC  171 (426)
Q Consensus       100 ~N~rIrk~d--~g~V-stIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~  171 (426)
                      .++.|+.+|  .+.. ..+....               .-..+..|++.+..+.++++-..++.|+.+++....+
T Consensus       202 ~dg~v~~wd~~~~~~~~~~~~~~---------------~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~  261 (357)
T 4g56_B          202 EDGRILLWDTRKPKPATRIDFCA---------------SDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDS  261 (357)
T ss_dssp             TTSCEEECCTTSSSCBCBCCCTT---------------CCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGG
T ss_pred             cCCceEEEECCCCceeeeeeecc---------------ccccccchhhhhcccceEEEeecccceeEEECCCCcE
Confidence            678888888  2222 1111100               0113456775444566777666678888888775443

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=92.60  E-value=4  Score=39.17  Aligned_cols=116  Identities=10%  Similarity=0.151  Sum_probs=63.3

Q ss_pred             CceEEEEcCCC-cEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcC-CCCEEEEEC
Q 014345           22 EPYSVEVLPGG-ELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD-RGNIYIADT   99 (426)
Q Consensus        22 ~P~GIaVd~dG-~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~-dG~LYVADt   99 (426)
                      .-..+++.+++ .++++-...+.|+.+|...   ++........    +         .-.....+++.+ +++++++-.
T Consensus       171 ~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~---~~~~~~~~~~----~---------~~~~~~~~~~~p~~~~~l~sg~  234 (344)
T 4gqb_B          171 QVTCVAASPHKDSVFLSCSEDNRILLWDTRC---PKPASQIGCS----A---------PGYLPTSLAWHPQQSEVFVFGD  234 (344)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSCEEEEETTS---SSCEEECC-----------------CCCEEEEEECSSCTTEEEEEE
T ss_pred             ceEEEEecCCCCCceeeeccccccccccccc---cceeeeeecc----e---------eeccceeeeecCCCCcceEEec
Confidence            34677777766 3666666667777777653   2221111110    0         011256788887 457888777


Q ss_pred             CCCEEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCC-eEEEEECCCCeEEEEEcCCCce
Q 014345          100 MNMAIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSC-SLLVIDRGNRAIREIQLHFDDC  171 (426)
Q Consensus       100 ~N~rIrk~d--~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G-~LYVaDsgN~rIr~I~l~~~~~  171 (426)
                      .++.|+.+|  .+. +.++.+-..                 .-..|++ .+++ .++++-...+.|+.++.....+
T Consensus       235 ~dg~v~~wd~~~~~~~~~~~~h~~-----------------~v~~v~f-sp~g~~~lasgs~D~~i~vwd~~~~~~  292 (344)
T 4gqb_B          235 ENGTVSLVDTKSTSCVLSSAVHSQ-----------------CVTGLVF-SPHSVPFLASLSEDCSLAVLDSSLSEL  292 (344)
T ss_dssp             TTSEEEEEESCC--CCEEEECCSS-----------------CEEEEEE-CSSSSCCEEEEETTSCEEEECTTCCEE
T ss_pred             cCCcEEEEECCCCcEEEEEcCCCC-----------------CEEEEEE-ccCCCeEEEEEeCCCeEEEEECCCCcE
Confidence            788999998  333 555554210                 1244553 4444 4555555566677776655443

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=92.57  E-value=2  Score=40.61  Aligned_cols=113  Identities=10%  Similarity=0.001  Sum_probs=73.2

Q ss_pred             CceEEEEcC-CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECC
Q 014345           22 EPYSVEVLP-GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTM  100 (426)
Q Consensus        22 ~P~GIaVd~-dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~  100 (426)
                      ...++++.+ +++++++-...+.|..++..+   ..+..+.+..    +.         -.....+++.+++.++++-..
T Consensus       120 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~---~~~~~~~~~~----~~---------~~~v~~~~~~~~~~~l~~~~~  183 (383)
T 3ei3_B          120 AITGMKFNQFNTNQLFVSSIRGATTLRDFSG---SVIQVFAKTD----SW---------DYWYCCVDVSVSRQMLATGDS  183 (383)
T ss_dssp             BEEEEEEETTEEEEEEEEETTTEEEEEETTS---CEEEEEECCC----CS---------SCCEEEEEEETTTTEEEEEET
T ss_pred             ceeEEEeCCCCCCEEEEEeCCCEEEEEECCC---CceEEEeccC----CC---------CCCeEEEEECCCCCEEEEECC
Confidence            456788887 566666666677888888764   2333333221    00         122568999999998888777


Q ss_pred             CCEEEEEc-CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCe-EEEEECCCCeEEEEEcCC
Q 014345          101 NMAIRKIS-DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCS-LLVIDRGNRAIREIQLHF  168 (426)
Q Consensus       101 N~rIrk~d-~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~-LYVaDsgN~rIr~I~l~~  168 (426)
                      ++.|+.++ .+. +.++.+..                 .....|+ +.+++. ++++-..++.|+.+++..
T Consensus       184 d~~i~i~d~~~~~~~~~~~h~-----------------~~v~~~~-~~~~~~~~l~s~~~d~~i~iwd~~~  236 (383)
T 3ei3_B          184 TGRLLLLGLDGHEIFKEKLHK-----------------AKVTHAE-FNPRCDWLMATSSVDATVKLWDLRN  236 (383)
T ss_dssp             TSEEEEEETTSCEEEEEECSS-----------------SCEEEEE-ECSSCTTEEEEEETTSEEEEEEGGG
T ss_pred             CCCEEEEECCCCEEEEeccCC-----------------CcEEEEE-ECCCCCCEEEEEeCCCEEEEEeCCC
Confidence            89999999 544 44444311                 1245667 456665 777777778899998875

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=92.54  E-value=5.1  Score=38.14  Aligned_cols=115  Identities=9%  Similarity=0.059  Sum_probs=70.7

Q ss_pred             ceEEEEcC--CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECC
Q 014345           23 PYSVEVLP--GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTM  100 (426)
Q Consensus        23 P~GIaVd~--dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~  100 (426)
                      ...+++.+  +|+++++-...+.|..++.....  .+..+.+.                -..-+.|++.++|+++++-..
T Consensus       199 v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~--~~~~~~~h----------------~~~v~~v~~~p~~~~l~s~s~  260 (354)
T 2pbi_B          199 VLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQ--CVQAFETH----------------ESDVNSVRYYPSGDAFASGSD  260 (354)
T ss_dssp             EEEEEECCCSSCCEEEEEETTSCEEEEETTTCC--EEEEECCC----------------SSCEEEEEECTTSSEEEEEET
T ss_pred             eEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCc--EEEEecCC----------------CCCeEEEEEeCCCCEEEEEeC
Confidence            45666655  56777776677888888876321  12222211                112467999999998888777


Q ss_pred             CCEEEEEc-CCC--cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCce
Q 014345          101 NMAIRKIS-DSG--VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDC  171 (426)
Q Consensus       101 N~rIrk~d-~g~--VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~  171 (426)
                      ++.|+.+| ...  +..+....               .......++ +.+++.++++-...+.|+.+++....+
T Consensus       261 D~~v~lwd~~~~~~~~~~~~~~---------------~~~~~~~~~-~s~~g~~l~~g~~d~~i~vwd~~~~~~  318 (354)
T 2pbi_B          261 DATCRLYDLRADREVAIYSKES---------------IIFGASSVD-FSLSGRLLFAGYNDYTINVWDVLKGSR  318 (354)
T ss_dssp             TSCEEEEETTTTEEEEEECCTT---------------CCSCEEEEE-ECTTSSEEEEEETTSCEEEEETTTCSE
T ss_pred             CCeEEEEECCCCcEEEEEcCCC---------------cccceeEEE-EeCCCCEEEEEECCCcEEEEECCCCce
Confidence            88999999 322  22222110               011234566 567788777777788899998765443

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=92.51  E-value=5.8  Score=36.98  Aligned_cols=115  Identities=12%  Similarity=0.088  Sum_probs=70.4

Q ss_pred             CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcC------CCCEE
Q 014345           22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD------RGNIY   95 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~------dG~LY   95 (426)
                      .-..+++++++.++++-...+.|..++..+.   .+..+.|..                ..-..+++.+      ++.++
T Consensus       109 ~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~---~~~~~~~h~----------------~~v~~~~~~~~~~~~~~~~~l  169 (319)
T 3frx_A          109 DVMSVDIDKKASMIISGSRDKTIKVWTIKGQ---CLATLLGHN----------------DWVSQVRVVPNEKADDDSVTI  169 (319)
T ss_dssp             CEEEEEECTTSCEEEEEETTSCEEEEETTSC---EEEEECCCS----------------SCEEEEEECCC------CCEE
T ss_pred             cEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---eEEEEeccC----------------CcEEEEEEccCCCCCCCccEE
Confidence            4678888888888888777888888887642   233333221                0123344444      34566


Q ss_pred             EEECCCCEEEEEcC--CCc-EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceE
Q 014345           96 IADTMNMAIRKISD--SGV-TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCA  172 (426)
Q Consensus        96 VADt~N~rIrk~d~--g~V-stIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~~  172 (426)
                      ++-..++.|+.++-  ... ..+.+-.                 .....++ +.+++.++++-...+.|+.+++....+.
T Consensus       170 ~s~~~d~~i~~wd~~~~~~~~~~~~h~-----------------~~v~~~~-~sp~g~~l~s~~~dg~i~iwd~~~~~~~  231 (319)
T 3frx_A          170 ISAGNDKMVKAWNLNQFQIEADFIGHN-----------------SNINTLT-ASPDGTLIASAGKDGEIMLWNLAAKKAM  231 (319)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEECCCC-----------------SCEEEEE-ECTTSSEEEEEETTCEEEEEETTTTEEE
T ss_pred             EEEeCCCEEEEEECCcchhheeecCCC-----------------CcEEEEE-EcCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence            66666788888882  222 2332210                 1234566 5777887777777889999998776554


Q ss_pred             e
Q 014345          173 Y  173 (426)
Q Consensus       173 ~  173 (426)
                      .
T Consensus       232 ~  232 (319)
T 3frx_A          232 Y  232 (319)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=92.44  E-value=2.8  Score=39.94  Aligned_cols=110  Identities=14%  Similarity=0.148  Sum_probs=69.8

Q ss_pred             EEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCCCEEEE
Q 014345           27 EVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMAIRK  106 (426)
Q Consensus        27 aVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N~rIrk  106 (426)
                      ++.++|+++++-..++.|..++...   +.......      ++         -.....|++.++|+++++-..++.|+.
T Consensus       104 ~~~~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~------~h---------~~~v~~~~~~~~~~~l~s~s~d~~i~i  165 (420)
T 3vl1_A          104 TAKLQMRRFILGTTEGDIKVLDSNF---NLQREIDQ------AH---------VSEITKLKFFPSGEALISSSQDMQLKI  165 (420)
T ss_dssp             EECSSSCEEEEEETTSCEEEECTTS---CEEEEETT------SS---------SSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             EEecCCCEEEEEECCCCEEEEeCCC---cceeeecc------cc---------cCccEEEEECCCCCEEEEEeCCCeEEE
Confidence            4566787777666777888887763   22222210      11         123568999999987777777889999


Q ss_pred             Ec--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceE
Q 014345          107 IS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCA  172 (426)
Q Consensus       107 ~d--~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~~  172 (426)
                      ++  .+. +.++.+..                 .....+++ .+++.++++-...+.|+.+++....+.
T Consensus       166 wd~~~~~~~~~~~~h~-----------------~~v~~~~~-~~~~~~l~s~~~d~~v~iwd~~~~~~~  216 (420)
T 3vl1_A          166 WSVKDGSNPRTLIGHR-----------------ATVTDIAI-IDRGRNVLSASLDGTIRLWECGTGTTI  216 (420)
T ss_dssp             EETTTCCCCEEEECCS-----------------SCEEEEEE-ETTTTEEEEEETTSCEEEEETTTTEEE
T ss_pred             EeCCCCcCceEEcCCC-----------------CcEEEEEE-cCCCCEEEEEcCCCcEEEeECCCCcee
Confidence            98  343 45554311                 12356674 556666666666788999998765554

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=92.41  E-value=4.1  Score=38.06  Aligned_cols=116  Identities=14%  Similarity=0.111  Sum_probs=70.9

Q ss_pred             CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCC
Q 014345           22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN  101 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N  101 (426)
                      ....++++++|.++++-...+.|+.++.....  .+..+.+.                 .....+++.++|.++++-.. 
T Consensus       198 ~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~-----------------~~v~~~~~sp~~~~la~~~~-  257 (319)
T 3frx_A          198 NINTLTASPDGTLIASAGKDGEIMLWNLAAKK--AMYTLSAQ-----------------DEVFSLAFSPNRYWLAAATA-  257 (319)
T ss_dssp             CEEEEEECTTSSEEEEEETTCEEEEEETTTTE--EEEEEECC-----------------SCEEEEEECSSSSEEEEEET-
T ss_pred             cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc--EEEEecCC-----------------CcEEEEEEcCCCCEEEEEcC-
Confidence            46789999999988887788899999887421  12222111                 12467999999986665443 


Q ss_pred             CEEEEEc-CCC--cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcC
Q 014345          102 MAIRKIS-DSG--VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLH  167 (426)
Q Consensus       102 ~rIrk~d-~g~--VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~  167 (426)
                      ..|+.++ +..  +..+.....+.         ....-.....++ ..++|.++++-...+.|+.+++.
T Consensus       258 ~~i~v~~~~~~~~~~~~~~~~~~~---------~~~~~~~v~~~~-~spdg~~l~sg~~Dg~i~vWd~~  316 (319)
T 3frx_A          258 TGIKVFSLDPQYLVDDLRPEFAGY---------SKAAEPHAVSLA-WSADGQTLFAGYTDNVIRVWQVM  316 (319)
T ss_dssp             TEEEEEEETTEEEEEEECCCCTTC---------CGGGCCCEEEEE-ECTTSSEEEEEETTSCEEEEEEE
T ss_pred             CCcEEEEeCcCeeeeccCcccccc---------ccCcCcceeEEE-ECCCCCEEEEeecCceEEEEEEe
Confidence            4466666 332  23332211110         000112335677 57888888887778899988754

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=92.35  E-value=3.6  Score=38.89  Aligned_cols=114  Identities=14%  Similarity=0.094  Sum_probs=69.1

Q ss_pred             CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCC
Q 014345           22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN  101 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N  101 (426)
                      .-.+|+++++|+++++-...+.|..++.+......+..+.|.                -..-..|++.++|+++++-..+
T Consensus        63 ~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h----------------~~~v~~v~~sp~~~~l~s~s~D  126 (345)
T 3fm0_A           63 TVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGH----------------ENEVKSVAWAPSGNLLATCSRD  126 (345)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCC----------------SSCEEEEEECTTSSEEEEEETT
T ss_pred             cEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCC----------------CCCceEEEEeCCCCEEEEEECC
Confidence            457889999999877777777777776653210111222221                1124689999999988887777


Q ss_pred             CEEEEEc--CCC-cE---EEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCC
Q 014345          102 MAIRKIS--DSG-VT---TIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFD  169 (426)
Q Consensus       102 ~rIrk~d--~g~-Vs---tIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~  169 (426)
                      +.|+.++  .+. ..   ++.+.                 -..-..++ ..+++.++++-...+.|+.++....
T Consensus       127 ~~v~iwd~~~~~~~~~~~~~~~h-----------------~~~v~~~~-~~p~~~~l~s~s~d~~i~~w~~~~~  182 (345)
T 3fm0_A          127 KSVWVWEVDEEDEYECVSVLNSH-----------------TQDVKHVV-WHPSQELLASASYDDTVKLYREEED  182 (345)
T ss_dssp             SCEEEEEECTTSCEEEEEEECCC-----------------CSCEEEEE-ECSSSSCEEEEETTSCEEEEEEETT
T ss_pred             CeEEEEECCCCCCeEEEEEecCc-----------------CCCeEEEE-ECCCCCEEEEEeCCCcEEEEEecCC
Confidence            8888887  332 22   22110                 01124556 4666776666666778888776554

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=92.31  E-value=7.4  Score=37.33  Aligned_cols=115  Identities=10%  Similarity=0.027  Sum_probs=70.3

Q ss_pred             CceEEEEcCCC-cEEEEEC--CCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEE-
Q 014345           22 EPYSVEVLPGG-ELLILDS--ANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIA-   97 (426)
Q Consensus        22 ~P~GIaVd~dG-~LYVaD~--~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVA-   97 (426)
                      ...++++.++| .++++..  ..+.|..++...   +........                -.....+++.++|..+++ 
T Consensus       261 ~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~---~~~~~~~~~----------------~~~v~~~~~s~~~~~l~~~  321 (401)
T 4aez_A          261 AVKAVAWCPWQSNLLATGGGTMDKQIHFWNAAT---GARVNTVDA----------------GSQVTSLIWSPHSKEIMST  321 (401)
T ss_dssp             CCCEEEECTTSTTEEEEECCTTTCEEEEEETTT---CCEEEEEEC----------------SSCEEEEEECSSSSEEEEE
T ss_pred             eEEEEEECCCCCCEEEEecCCCCCEEEEEECCC---CCEEEEEeC----------------CCcEEEEEECCCCCeEEEE
Confidence            46788888865 4666643  577888888764   222222111                012578999999987776 


Q ss_pred             -ECCCCEEEEEc--CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCc
Q 014345           98 -DTMNMAIRKIS--DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDD  170 (426)
Q Consensus        98 -Dt~N~rIrk~d--~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~  170 (426)
                       ...++.|+.++  .+....+.--. +             .-.....++ +.+++.++++-..++.|+.+++....
T Consensus       322 ~g~~dg~i~v~~~~~~~~~~~~~~~-~-------------h~~~v~~~~-~s~dg~~l~s~~~dg~i~iw~~~~~~  382 (401)
T 4aez_A          322 HGFPDNNLSIWSYSSSGLTKQVDIP-A-------------HDTRVLYSA-LSPDGRILSTAASDENLKFWRVYDGD  382 (401)
T ss_dssp             ECTTTCEEEEEEEETTEEEEEEEEE-C-------------CSSCCCEEE-ECTTSSEEEEECTTSEEEEEECCC--
T ss_pred             eecCCCcEEEEecCCccceeEEEec-C-------------CCCCEEEEE-ECCCCCEEEEEeCCCcEEEEECCCCc
Confidence             44678899888  33332221100 0             011345677 57788877777778999999987544

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=92.27  E-value=2.6  Score=44.25  Aligned_cols=112  Identities=8%  Similarity=0.074  Sum_probs=69.7

Q ss_pred             CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCC
Q 014345           22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN  101 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N  101 (426)
                      ...+++++++|.++++-..++.|..++.+...  .+..+.+.                -.....+++.++|..+++-..+
T Consensus        57 ~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~--~~~~~~~~----------------~~~v~~~~~s~~~~~l~~~~~d  118 (814)
T 3mkq_A           57 PVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE--KVVDFEAH----------------PDYIRSIAVHPTKPYVLSGSDD  118 (814)
T ss_dssp             CEEEEEEEGGGTEEEEEETTSEEEEEETTTCC--EEEEEECC----------------SSCEEEEEECSSSSEEEEEETT
T ss_pred             cEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc--EEEEEecC----------------CCCEEEEEEeCCCCEEEEEcCC
Confidence            46788999988876666678889999876421  22233221                1125689999999866665567


Q ss_pred             CEEEEEc-C-C-Cc-EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCC
Q 014345          102 MAIRKIS-D-S-GV-TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHF  168 (426)
Q Consensus       102 ~rIrk~d-~-g-~V-stIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~  168 (426)
                      +.|+.++ . + .. .++.+..                 .....+++.+.++.++++-..++.|+.+++..
T Consensus       119 g~i~vw~~~~~~~~~~~~~~~~-----------------~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~  172 (814)
T 3mkq_A          119 LTVKLWNWENNWALEQTFEGHE-----------------HFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ  172 (814)
T ss_dssp             SEEEEEEGGGTSEEEEEEECCS-----------------SCEEEEEEETTEEEEEEEEETTSEEEEEETTC
T ss_pred             CEEEEEECCCCceEEEEEcCCC-----------------CcEEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence            8899888 3 3 22 3333210                 12345564332666666666677888887754

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=92.25  E-value=2.9  Score=37.68  Aligned_cols=113  Identities=10%  Similarity=-0.003  Sum_probs=69.6

Q ss_pred             CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccc---cEEEecCCCCcccccCCcccccccCCcceEEEcC--CCCEEE
Q 014345           22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSR---PKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD--RGNIYI   96 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~---v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~--dG~LYV   96 (426)
                      .-.+|+++++|+++++-..++.|..++.+... ..   ...+.+.                -.....|++.+  ++++++
T Consensus        13 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~~~~----------------~~~v~~~~~~~~~d~~~l~   75 (351)
T 3f3f_A           13 LVHDVVYDFYGRHVATCSSDQHIKVFKLDKDT-SNWELSDSWRAH----------------DSSIVAIDWASPEYGRIIA   75 (351)
T ss_dssp             CEEEEEECSSSSEEEEEETTSEEEEEEECSSS-CCEEEEEEEECC----------------SSCEEEEEECCGGGCSEEE
T ss_pred             ceeEEEEcCCCCEEEEeeCCCeEEEEECCCCC-CcceecceeccC----------------CCcEEEEEEcCCCCCCEEE
Confidence            46899999999987777778889888876321 11   1112121                11246788887  577777


Q ss_pred             EECCCCEEEEEc-CCC-----------cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCC--CeEEEEECCCCeEE
Q 014345           97 ADTMNMAIRKIS-DSG-----------VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSS--CSLLVIDRGNRAIR  162 (426)
Q Consensus        97 ADt~N~rIrk~d-~g~-----------VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~--G~LYVaDsgN~rIr  162 (426)
                      +=..++.|+.++ ..+           +.++.+.                 -.....|+ +.++  +.++++-..++.|+
T Consensus        76 s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~-----------------~~~v~~~~-~~~~~~~~~l~~~~~dg~v~  137 (351)
T 3f3f_A           76 SASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDS-----------------KGSLYSVK-FAPAHLGLKLACLGNDGILR  137 (351)
T ss_dssp             EEETTSCEEEEEECTTSCTTSSCSEEEEEEECCC-----------------SSCEEEEE-ECCGGGCSEEEEEETTCEEE
T ss_pred             EEcCCCeEEEEecCCCcccccccCcceeeeeccc-----------------CCceeEEE-EcCCCCCcEEEEecCCCcEE
Confidence            766677888887 322           2222211                 01235666 4555  66666666678888


Q ss_pred             EEEcCCC
Q 014345          163 EIQLHFD  169 (426)
Q Consensus       163 ~I~l~~~  169 (426)
                      .+++...
T Consensus       138 iwd~~~~  144 (351)
T 3f3f_A          138 LYDALEP  144 (351)
T ss_dssp             EEECSST
T ss_pred             EecCCCh
Confidence            8887653

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=92.09  E-value=3.2  Score=38.15  Aligned_cols=115  Identities=13%  Similarity=0.079  Sum_probs=73.5

Q ss_pred             CceEEEEcCC----CcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcC-CCCEEE
Q 014345           22 EPYSVEVLPG----GELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD-RGNIYI   96 (426)
Q Consensus        22 ~P~GIaVd~d----G~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~-dG~LYV   96 (426)
                      ....+++.++    |.++++-..++.|..++.....  .+..+.+.                -.....|++.+ ++++++
T Consensus        71 ~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~--~~~~~~~~----------------~~~i~~~~~~~~~~~~l~  132 (366)
T 3k26_A           71 NFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQ--CIKHYVGH----------------GNAINELKFHPRDPNLLL  132 (366)
T ss_dssp             CEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCC--EEEEEESC----------------CSCEEEEEECSSCTTEEE
T ss_pred             cEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhce--EeeeecCC----------------CCcEEEEEECCCCCCEEE
Confidence            4678888887    6677777788899999876421  12333222                11256789998 888777


Q ss_pred             EECCCCEEEEEc--CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCC
Q 014345           97 ADTMNMAIRKIS--DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHF  168 (426)
Q Consensus        97 ADt~N~rIrk~d--~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~  168 (426)
                      +-..++.|+.++  .+..........+             .-.....++ +.+++.++++-..++.|+.+++..
T Consensus       133 s~~~dg~i~iwd~~~~~~~~~~~~~~~-------------~~~~v~~~~-~~~~~~~l~~~~~dg~i~i~d~~~  192 (366)
T 3k26_A          133 SVSKDHALRLWNIQTDTLVAIFGGVEG-------------HRDEVLSAD-YDLLGEKIMSCGMDHSLKLWRINS  192 (366)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECSTTS-------------CSSCEEEEE-ECTTSSEEEEEETTSCEEEEESCS
T ss_pred             EEeCCCeEEEEEeecCeEEEEeccccc-------------ccCceeEEE-ECCCCCEEEEecCCCCEEEEECCC
Confidence            777788899998  3333222211000             011356677 466777767666688999999875

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=92.07  E-value=5.1  Score=37.53  Aligned_cols=114  Identities=8%  Similarity=-0.037  Sum_probs=74.1

Q ss_pred             CceEEEEcC--CCcEEEEECCCCeEEEEeCCCCcccccEEEe-cCCCCcccccCCcccccccCCcceEEEcCCCCEEEEE
Q 014345           22 EPYSVEVLP--GGELLILDSANSNLYRISSSLSLYSRPKLVA-GSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIAD   98 (426)
Q Consensus        22 ~P~GIaVd~--dG~LYVaD~~n~rI~kid~dg~~~g~v~~va-G~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVAD   98 (426)
                      ...++++.+  +|+++++-...+.|..++...   +....+. +..               -.....++++++|.++++-
T Consensus       127 ~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~---~~~~~~~~~~~---------------~~~i~~~~~~pdg~~lasg  188 (343)
T 3lrv_A          127 EIIYMYGHNEVNTEYFIWADNRGTIGFQSYED---DSQYIVHSAKS---------------DVEYSSGVLHKDSLLLALY  188 (343)
T ss_dssp             CEEEEECCC---CCEEEEEETTCCEEEEESSS---SCEEEEECCCS---------------SCCCCEEEECTTSCEEEEE
T ss_pred             CEEEEEcCCCCCCCEEEEEeCCCcEEEEECCC---CcEEEEEecCC---------------CCceEEEEECCCCCEEEEE
Confidence            467889999  999888777888999999874   2222221 110               1125689999999999887


Q ss_pred             CCCCEEEEEc--CCC-c-EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCce
Q 014345           99 TMNMAIRKIS--DSG-V-TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDC  171 (426)
Q Consensus        99 t~N~rIrk~d--~g~-V-stIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~  171 (426)
                      ..++.|+.+|  .+. + .++.++       +         -.....|+ +.+++.++++-..+ .|+.+++....+
T Consensus       189 ~~dg~i~iwd~~~~~~~~~~~~~~-------h---------~~~v~~l~-fs~~g~~l~s~~~~-~v~iwd~~~~~~  247 (343)
T 3lrv_A          189 SPDGILDVYNLSSPDQASSRFPVD-------E---------EAKIKEVK-FADNGYWMVVECDQ-TVVCFDLRKDVG  247 (343)
T ss_dssp             CTTSCEEEEESSCTTSCCEECCCC-------T---------TSCEEEEE-ECTTSSEEEEEESS-BEEEEETTSSTT
T ss_pred             cCCCEEEEEECCCCCCCccEEecc-------C---------CCCEEEEE-EeCCCCEEEEEeCC-eEEEEEcCCCCc
Confidence            7789999999  333 2 233220       0         01345677 46677665555444 999999876544

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=91.98  E-value=4.6  Score=42.19  Aligned_cols=119  Identities=11%  Similarity=0.091  Sum_probs=74.5

Q ss_pred             CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCC--CEEEEEC
Q 014345           22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRG--NIYIADT   99 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG--~LYVADt   99 (426)
                      .-.+|+++++|.++++-+..+.|..++..+.   ....+...   ..++         -..-..+++.+++  .++++-.
T Consensus       474 ~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~---~~~~~~~~---~~~h---------~~~v~~~~~~~~~~~~~l~s~s  538 (694)
T 3dm0_A          474 DVLSVAFSLDNRQIVSASRDRTIKLWNTLGE---CKYTISEG---GEGH---------RDWVSCVRFSPNTLQPTIVSAS  538 (694)
T ss_dssp             CEEEEEECTTSSCEEEEETTSCEEEECTTSC---EEEEECSS---TTSC---------SSCEEEEEECSCSSSCEEEEEE
T ss_pred             CEEEEEEeCCCCEEEEEeCCCEEEEEECCCC---cceeeccC---CCCC---------CCcEEEEEEeCCCCcceEEEEe
Confidence            4578888888887777777788888876532   11222111   1111         1124578888776  4666666


Q ss_pred             CCCEEEEEc--CCCc-EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceEe
Q 014345          100 MNMAIRKIS--DSGV-TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAY  173 (426)
Q Consensus       100 ~N~rIrk~d--~g~V-stIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~~~  173 (426)
                      .++.|+.++  .+.. .++.+..                 .....|+ +.+++.++++-...+.|+.+++....+..
T Consensus       539 ~d~~v~vwd~~~~~~~~~~~~h~-----------------~~v~~v~-~spdg~~l~sg~~Dg~i~iwd~~~~~~~~  597 (694)
T 3dm0_A          539 WDKTVKVWNLSNCKLRSTLAGHT-----------------GYVSTVA-VSPDGSLCASGGKDGVVLLWDLAEGKKLY  597 (694)
T ss_dssp             TTSCEEEEETTTCCEEEEECCCS-----------------SCEEEEE-ECTTSSEEEEEETTSBCEEEETTTTEEEE
T ss_pred             CCCeEEEEECCCCcEEEEEcCCC-----------------CCEEEEE-EeCCCCEEEEEeCCCeEEEEECCCCceEE
Confidence            678888888  3333 3443210                 1235666 57788888888888999999988766554

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=91.94  E-value=1.6  Score=42.87  Aligned_cols=113  Identities=10%  Similarity=0.024  Sum_probs=70.9

Q ss_pred             CceEEEEcC-CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECC
Q 014345           22 EPYSVEVLP-GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTM  100 (426)
Q Consensus        22 ~P~GIaVd~-dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~  100 (426)
                      .-.+|++.| +++++++-...+.|..++..+   +....+.... ..            -..-..++++++|.++++-..
T Consensus       166 ~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~---~~~~~~~~~~-~~------------~~~~~~~~~~~~~~~l~~g~~  229 (435)
T 4e54_B          166 SITGLKFNPLNTNQFYASSMEGTTRLQDFKG---NILRVFASSD-TI------------NIWFCSLDVSASSRMVVTGDN  229 (435)
T ss_dssp             CCCEEEECSSCTTEEEEECSSSCEEEEETTS---CEEEEEECCS-SC------------SCCCCCEEEETTTTEEEEECS
T ss_pred             CEEEEEEeCCCCCEEEEEeCCCEEEEeeccC---CceeEEeccC-CC------------CccEEEEEECCCCCEEEEEeC
Confidence            356888887 677777777778888888774   2333443221 00            112356899999998888888


Q ss_pred             CCEEEEEc-CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCC-eEEEEECCCCeEEEEEcCC
Q 014345          101 NMAIRKIS-DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSC-SLLVIDRGNRAIREIQLHF  168 (426)
Q Consensus       101 N~rIrk~d-~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G-~LYVaDsgN~rIr~I~l~~  168 (426)
                      ++.|+.++ ++. +.++.+-                 -..-.+|++ .+++ .++++-...+.|+.+++..
T Consensus       230 dg~i~~wd~~~~~~~~~~~h-----------------~~~v~~v~~-~p~~~~~~~s~s~d~~v~iwd~~~  282 (435)
T 4e54_B          230 VGNVILLNMDGKELWNLRMH-----------------KKKVTHVAL-NPCCDWFLATASVDQTVKIWDLRQ  282 (435)
T ss_dssp             SSBEEEEESSSCBCCCSBCC-----------------SSCEEEEEE-CTTCSSEEEEEETTSBCCEEETTT
T ss_pred             CCcEeeeccCcceeEEEecc-----------------cceEEeeee-cCCCceEEEEecCcceeeEEeccc
Confidence            88899998 443 2222210                 012345664 4444 5666666678888888765

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=91.91  E-value=5.3  Score=39.24  Aligned_cols=113  Identities=14%  Similarity=0.148  Sum_probs=65.4

Q ss_pred             CceEEEEcCCCc-EEEEECC--CCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCC-EEEE
Q 014345           22 EPYSVEVLPGGE-LLILDSA--NSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIA   97 (426)
Q Consensus        22 ~P~GIaVd~dG~-LYVaD~~--n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~-LYVA   97 (426)
                      ...+++++|||. |+++...  ...|+.++..+   ++...+.+..                .....++++++|+ |+++
T Consensus       180 ~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~t---g~~~~l~~~~----------------~~~~~~~~spdg~~la~~  240 (415)
T 2hqs_A          180 PLMSPAWSPDGSKLAYVTFESGRSALVIQTLAN---GAVRQVASFP----------------RHNGAPAFSPDGSKLAFA  240 (415)
T ss_dssp             CEEEEEECTTSSEEEEEECTTSSCEEEEEETTT---CCEEEEECCS----------------SCEEEEEECTTSSEEEEE
T ss_pred             cceeeEEcCCCCEEEEEEecCCCcEEEEEECCC---CcEEEeecCC----------------CcccCEEEcCCCCEEEEE
Confidence            467889999997 4444433  25899999875   3444443321                1246789999998 5545


Q ss_pred             EC--CCCEEEEEc-C-CCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCe-EEEEEC--CCCeEEEEEcCCCc
Q 014345           98 DT--MNMAIRKIS-D-SGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCS-LLVIDR--GNRAIREIQLHFDD  170 (426)
Q Consensus        98 Dt--~N~rIrk~d-~-g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~-LYVaDs--gN~rIr~I~l~~~~  170 (426)
                      -.  ++..|+.++ . +....+.+..                 .....++ ..++|. |+++..  +..+|+.+++.+..
T Consensus       241 ~~~~g~~~i~~~d~~~~~~~~l~~~~-----------------~~~~~~~-~spdg~~l~~~s~~~g~~~i~~~d~~~~~  302 (415)
T 2hqs_A          241 LSKTGSLNLYVMDLASGQIRQVTDGR-----------------SNNTEPT-WFPDSQNLAFTSDQAGRPQVYKVNINGGA  302 (415)
T ss_dssp             ECTTSSCEEEEEETTTCCEEECCCCS-----------------SCEEEEE-ECTTSSEEEEEECTTSSCEEEEEETTSSC
T ss_pred             EecCCCceEEEEECCCCCEEeCcCCC-----------------CcccceE-ECCCCCEEEEEECCCCCcEEEEEECCCCC
Confidence            43  245788888 3 3344443211                 0234556 455664 554432  23478888877654


Q ss_pred             e
Q 014345          171 C  171 (426)
Q Consensus       171 ~  171 (426)
                      +
T Consensus       303 ~  303 (415)
T 2hqs_A          303 P  303 (415)
T ss_dssp             C
T ss_pred             E
Confidence            4

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=91.90  E-value=2.2  Score=41.76  Aligned_cols=115  Identities=9%  Similarity=-0.004  Sum_probs=72.2

Q ss_pred             CceEEEEcCCCc-EEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCC-CEEEEEC
Q 014345           22 EPYSVEVLPGGE-LLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRG-NIYIADT   99 (426)
Q Consensus        22 ~P~GIaVd~dG~-LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG-~LYVADt   99 (426)
                      .+..|++.+++. ++++-...+.|..++..... ..+..+.+.                -.....|++.+++ .++++-.
T Consensus       279 ~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~-~~~~~~~~h----------------~~~v~~i~~sp~~~~~l~s~~  341 (430)
T 2xyi_A          279 EVNCLSFNPYSEFILATGSADKTVALWDLRNLK-LKLHSFESH----------------KDEIFQVQWSPHNETILASSG  341 (430)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSEEEEEETTCTT-SCSEEEECC----------------SSCEEEEEECSSCTTEEEEEE
T ss_pred             CeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC-CCeEEeecC----------------CCCEEEEEECCCCCCEEEEEe
Confidence            477888888775 77777777888888876311 123333221                1124679999988 4787777


Q ss_pred             CCCEEEEEc-CC-C-c-----------EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCe-EEEEECCCCeEEEE
Q 014345          100 MNMAIRKIS-DS-G-V-----------TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCS-LLVIDRGNRAIREI  164 (426)
Q Consensus       100 ~N~rIrk~d-~g-~-V-----------stIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~-LYVaDsgN~rIr~I  164 (426)
                      .+++|+.++ .. + .           ..+.--              ...-..+.+++ +.+++. ++++-...+.|+.+
T Consensus       342 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--------------~~h~~~v~~~~-~~p~~~~~l~s~s~dg~i~iw  406 (430)
T 2xyi_A          342 TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIH--------------GGHTAKISDFS-WNPNEPWIICSVSEDNIMQVW  406 (430)
T ss_dssp             TTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEEC--------------CCCSSCEEEEE-ECSSSTTEEEEEETTSEEEEE
T ss_pred             CCCcEEEEeCCCCccccCccccccCCcceEEEc--------------CCCCCCceEEE-ECCCCCCEEEEEECCCCEEEe
Confidence            788888888 22 1 1           111100              00112467788 566676 88888888999988


Q ss_pred             EcCC
Q 014345          165 QLHF  168 (426)
Q Consensus       165 ~l~~  168 (426)
                      ++..
T Consensus       407 ~~~~  410 (430)
T 2xyi_A          407 QMAE  410 (430)
T ss_dssp             EECH
T ss_pred             Eccc
Confidence            8754

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=91.74  E-value=3.1  Score=44.59  Aligned_cols=126  Identities=10%  Similarity=0.019  Sum_probs=77.1

Q ss_pred             CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCC
Q 014345           22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN  101 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N  101 (426)
                      ....|+.|++|.|||+..  +.|.+++.++.   .. .+.... ..    .+.    .-+...+|+.|++|+|||+-.. 
T Consensus       499 ~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~---~~-~~~~~~-~~----~~l----~~~~i~~i~~d~~g~lWigT~~-  562 (795)
T 4a2l_A          499 QITTLFRDSHKRLWIGGE--EGLSVFKQEGL---DI-QKASIL-PV----SNV----TKLFTNCIYEASNGIIWVGTRE-  562 (795)
T ss_dssp             CEEEEEECTTCCEEEEES--SCEEEEEEETT---EE-EECCCS-CS----CGG----GGSCEEEEEECTTSCEEEEESS-
T ss_pred             eEEEEEECCCCCEEEEeC--CceEEEeCCCC---eE-EEecCC-CC----CCC----CCCeeEEEEECCCCCEEEEeCC-
Confidence            467889999999999986  56888887642   22 221100 00    110    1234578999999999999763 


Q ss_pred             CEEEEEc-CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceEe-ecCCC
Q 014345          102 MAIRKIS-DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAY-QYGSS  178 (426)
Q Consensus       102 ~rIrk~d-~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~~~-~~~~g  178 (426)
                       -|.+++ ... +..+ ...        +|....    ...+|+ .|.+|+|||+-  ++-|.++++....+.. ....|
T Consensus       563 -Gl~~~d~~~~~~~~~-~~~--------~gl~~~----~i~~i~-~d~~g~lWi~t--~~Gl~~~~~~~~~~~~~~~~dG  625 (795)
T 4a2l_A          563 -GFYCFNEKDKQIKRY-NTT--------NGLPNN----VVYGIL-EDSFGRLWLST--NRGISCFNPETEKFRNFTESDG  625 (795)
T ss_dssp             -CEEEEETTTTEEEEE-CGG--------GTCSCS----CEEEEE-ECTTSCEEEEE--TTEEEEEETTTTEEEEECGGGT
T ss_pred             -CceeECCCCCcEEEe-CCC--------CCCchh----heEEEE-ECCCCCEEEEc--CCceEEEcCCCCcEEEcCCcCC
Confidence             588888 333 3333 211        111111    234566 78899999998  4678999988766543 33334


Q ss_pred             Cc
Q 014345          179 FP  180 (426)
Q Consensus       179 ~P  180 (426)
                      +|
T Consensus       626 l~  627 (795)
T 4a2l_A          626 LQ  627 (795)
T ss_dssp             CS
T ss_pred             Cc
Confidence            44

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=91.53  E-value=2.4  Score=39.22  Aligned_cols=117  Identities=10%  Similarity=0.012  Sum_probs=65.1

Q ss_pred             CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCC--CCEEEEEC
Q 014345           22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDR--GNIYIADT   99 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~d--G~LYVADt   99 (426)
                      .-.+|+++++|.++++-..++.|..++.+......+..+.+.        .        ..-..|++.++  ++++++-.
T Consensus        13 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h--------~--------~~v~~~~~~~~~~~~~l~s~~   76 (379)
T 3jrp_A           13 LIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGH--------E--------GPVWRVDWAHPKFGTILASCS   76 (379)
T ss_dssp             CEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCC--------S--------SCEEEEEECCGGGCSEEEEEE
T ss_pred             cEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCC--------C--------CcEEEEEeCCCCCCCEEEEec
Confidence            467899999999777777788888887753210111222221        1        12356777765  77766666


Q ss_pred             CCCEEEEEc--CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCC--CeEEEEECCCCeEEEEEcCCC
Q 014345          100 MNMAIRKIS--DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSS--CSLLVIDRGNRAIREIQLHFD  169 (426)
Q Consensus       100 ~N~rIrk~d--~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~--G~LYVaDsgN~rIr~I~l~~~  169 (426)
                      .++.|+.++  .+....+.--.     ++         -.....++ +.++  +.++++-..++.|+.+++...
T Consensus        77 ~dg~v~iwd~~~~~~~~~~~~~-----~~---------~~~v~~~~-~~~~~~~~~l~~~~~d~~i~v~d~~~~  135 (379)
T 3jrp_A           77 YDGKVLIWKEENGRWSQIAVHA-----VH---------SASVNSVQ-WAPHEYGPLLLVASSDGKVSVVEFKEN  135 (379)
T ss_dssp             TTSCEEEEEEETTEEEEEEEEC-----CC---------SSCEEEEE-ECCGGGCSEEEEEETTSEEEEEECCTT
T ss_pred             cCCEEEEEEcCCCceeEeeeec-----CC---------CcceEEEE-eCCCCCCCEEEEecCCCcEEEEecCCC
Confidence            677788877  44322211100     00         01234555 3444  555555555677777776543

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=91.50  E-value=3.8  Score=43.88  Aligned_cols=131  Identities=11%  Similarity=0.024  Sum_probs=77.6

Q ss_pred             CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCC
Q 014345           22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN  101 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N  101 (426)
                      ...+|+.|++|+|||+-.  +.|.+++.+.   ++...+....     . ...   -.-+....|+.|++|+|||+-.  
T Consensus       453 ~v~~i~~d~~g~lwigt~--~Gl~~~~~~~---~~~~~~~~~~-----~-~~~---~~~~~i~~i~~d~~g~lWigt~--  516 (795)
T 4a2l_A          453 NVYAILPDGEGNLWLGTL--SALVRFNPEQ---RSFTTIEKEK-----D-GTP---VVSKQITTLFRDSHKRLWIGGE--  516 (795)
T ss_dssp             CEEEEEECSSSCEEEEES--SCEEEEETTT---TEEEECCBCT-----T-CCB---CCCCCEEEEEECTTCCEEEEES--
T ss_pred             eeEEEEECCCCCEEEEec--CceeEEeCCC---CeEEEccccc-----c-ccc---cCCceEEEEEECCCCCEEEEeC--
Confidence            467888899999999875  4688898864   2333322110     0 000   0013457899999999999987  


Q ss_pred             CEEEEEc-C-CCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceEe-ecCCC
Q 014345          102 MAIRKIS-D-SGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAY-QYGSS  178 (426)
Q Consensus       102 ~rIrk~d-~-g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~~~-~~~~g  178 (426)
                      +-|.+++ . +.+ .+.... .     ..+.    .-....+|+ .|.+|.|||+-.+  .|.+++........ ....+
T Consensus       517 ~Gl~~~~~~~~~~-~~~~~~-~-----~~~l----~~~~i~~i~-~d~~g~lWigT~~--Gl~~~d~~~~~~~~~~~~~g  582 (795)
T 4a2l_A          517 EGLSVFKQEGLDI-QKASIL-P-----VSNV----TKLFTNCIY-EASNGIIWVGTRE--GFYCFNEKDKQIKRYNTTNG  582 (795)
T ss_dssp             SCEEEEEEETTEE-EECCCS-C-----SCGG----GGSCEEEEE-ECTTSCEEEEESS--CEEEEETTTTEEEEECGGGT
T ss_pred             CceEEEeCCCCeE-EEecCC-C-----CCCC----CCCeeEEEE-ECCCCCEEEEeCC--CceeECCCCCcEEEeCCCCC
Confidence            4577777 3 334 322100 0     0010    012345666 7899999998864  68889987665543 33334


Q ss_pred             Ccce
Q 014345          179 FPLG  182 (426)
Q Consensus       179 ~P~G  182 (426)
                      +|..
T Consensus       583 l~~~  586 (795)
T 4a2l_A          583 LPNN  586 (795)
T ss_dssp             CSCS
T ss_pred             Cchh
Confidence            5543

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=91.39  E-value=1.4  Score=45.55  Aligned_cols=118  Identities=10%  Similarity=0.052  Sum_probs=68.8

Q ss_pred             ceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCCC
Q 014345           23 PYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNM  102 (426)
Q Consensus        23 P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N~  102 (426)
                      +..+++++||.++++-...+.|+.++..+.   .+..+.-.     ++         -.....|++.++|.++++-..++
T Consensus       451 v~~va~spdg~~lasgs~D~~v~lwd~~~~---~~~~~~~~-----~h---------~~~v~~v~fspdg~~las~s~d~  513 (611)
T 1nr0_A          451 SSCVALSNDKQFVAVGGQDSKVHVYKLSGA---SVSEVKTI-----VH---------PAEITSVAFSNNGAFLVATDQSR  513 (611)
T ss_dssp             EEEEEECTTSCEEEEEETTSEEEEEEEETT---EEEEEEEE-----EC---------SSCEEEEEECTTSSEEEEEETTS
T ss_pred             ceEEEEeCCCCEEEEeCCCCeEEEEEccCC---ceeeeecc-----CC---------CCceEEEEECCCCCEEEEEcCCC
Confidence            456666666666666556666666655431   11111000     00         11356899999999888877788


Q ss_pred             EEEEEc-CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCc
Q 014345          103 AIRKIS-DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDD  170 (426)
Q Consensus       103 rIrk~d-~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~  170 (426)
                      .|+.++ ......+.-...+   ++         -..-++|+ +.++|.++++-...+.|+.+++....
T Consensus       514 ~v~~w~~~~~~~~~~~~~~~---~H---------~~~V~~v~-fspdg~~lasgs~D~~v~lW~~~~~~  569 (611)
T 1nr0_A          514 KVIPYSVANNFELAHTNSWT---FH---------TAKVACVS-WSPDNVRLATGSLDNSVIVWNMNKPS  569 (611)
T ss_dssp             CEEEEEGGGTTEESCCCCCC---CC---------SSCEEEEE-ECTTSSEEEEEETTSCEEEEETTCTT
T ss_pred             CEEEEEcCCCCceeeeeeee---ec---------ccceeEEE-ECCCCCEEEEEECCCcEEEEECCCcc
Confidence            898888 3211111100000   01         11346777 57888888887788999999987543

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=90.61  E-value=12  Score=35.74  Aligned_cols=73  Identities=12%  Similarity=-0.014  Sum_probs=44.6

Q ss_pred             cceEEEcCCCCEEEEECCCCEEEEEc-C-CC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEEC--C
Q 014345           83 PKGLTVDDRGNIYIADTMNMAIRKIS-D-SG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDR--G  157 (426)
Q Consensus        83 P~GIaVd~dG~LYVADt~N~rIrk~d-~-g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDs--g  157 (426)
                      ..++++.++|.++++-..++.|+.++ . +. +.++.+..                 .....+++......|+++-.  .
T Consensus       220 v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~-----------------~~v~~~~~~p~~~~ll~~~~gs~  282 (401)
T 4aez_A          220 VCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHN-----------------AAVKAVAWCPWQSNLLATGGGTM  282 (401)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCS-----------------SCCCEEEECTTSTTEEEEECCTT
T ss_pred             eeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCc-----------------ceEEEEEECCCCCCEEEEecCCC
Confidence            56889999998888777778899999 3 33 23333210                 12355664333445666543  4


Q ss_pred             CCeEEEEEcCCCceE
Q 014345          158 NRAIREIQLHFDDCA  172 (426)
Q Consensus       158 N~rIr~I~l~~~~~~  172 (426)
                      ++.|+.+++....+.
T Consensus       283 d~~i~i~d~~~~~~~  297 (401)
T 4aez_A          283 DKQIHFWNAATGARV  297 (401)
T ss_dssp             TCEEEEEETTTCCEE
T ss_pred             CCEEEEEECCCCCEE
Confidence            677777777655443

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=90.50  E-value=8.7  Score=36.66  Aligned_cols=142  Identities=11%  Similarity=0.119  Sum_probs=78.9

Q ss_pred             CceEEEEcCCC-cEEEEECCCCeEEEEeCCCCcc-c-ccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEE
Q 014345           22 EPYSVEVLPGG-ELLILDSANSNLYRISSSLSLY-S-RPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIAD   98 (426)
Q Consensus        22 ~P~GIaVd~dG-~LYVaD~~n~rI~kid~dg~~~-g-~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVAD   98 (426)
                      ....++++++| +++++-...+.|..++...... . .+..+.+....  .  ...........-..|+++++|.++++-
T Consensus       228 ~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~v~~~~~s~~g~~l~~~  303 (447)
T 3dw8_B          228 VITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDP--S--NRSFFSEIISSISDVKFSHSGRYMMTR  303 (447)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC---------CCHHHHHTTCEEEEEECTTSSEEEEE
T ss_pred             ceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCc--c--ccccccccCceEEEEEECCCCCEEEEe
Confidence            47899999998 8888877888999998764220 0 02333322100  0  000000011235789999999877776


Q ss_pred             CCCCEEEEEc-C--CC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCce
Q 014345           99 TMNMAIRKIS-D--SG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDC  171 (426)
Q Consensus        99 t~N~rIrk~d-~--g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~  171 (426)
                      .. +.|+.++ .  +. +.++.+..... .. .........+.....++ +.+++.++++-..++.|+.+++....+
T Consensus       304 ~~-~~v~iwd~~~~~~~~~~~~~~~~~~-~~-l~~~~~~~~i~~~~~~~-~s~~~~~l~s~s~dg~v~iwd~~~~~~  376 (447)
T 3dw8_B          304 DY-LSVKVWDLNMENRPVETYQVHEYLR-SK-LCSLYENDCIFDKFECC-WNGSDSVVMTGSYNNFFRMFDRNTKRD  376 (447)
T ss_dssp             ES-SEEEEEETTCCSSCSCCEESCGGGT-TT-HHHHHHTSGGGCCCCEE-ECTTSSEEEEECSTTEEEEEETTTCCE
T ss_pred             eC-CeEEEEeCCCCccccceeecccccc-cc-ccccccccccccceEEE-ECCCCCEEEEeccCCEEEEEEcCCCcc
Confidence            66 8999998 3  33 44444421100 00 00000001111223466 577787778777889999998876443

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=90.44  E-value=4.1  Score=45.38  Aligned_cols=116  Identities=9%  Similarity=0.038  Sum_probs=73.0

Q ss_pred             CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCC
Q 014345           22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN  101 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N  101 (426)
                      .-.+++++++|.++++-...+.|..++.....  .+..+.+.                -.....++++++|++.++-..+
T Consensus       617 ~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~--~~~~~~~h----------------~~~v~~~~~s~~~~~l~s~~~d  678 (1249)
T 3sfz_A          617 AVYHACFSQDGQRIASCGADKTLQVFKAETGE--KLLDIKAH----------------EDEVLCCAFSSDDSYIATCSAD  678 (1249)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTCC--EEEEECCC----------------SSCEEEEEECTTSSEEEEEETT
T ss_pred             cEEEEEECCCCCEEEEEeCCCeEEEEECCCCC--EEEEeccC----------------CCCEEEEEEecCCCEEEEEeCC
Confidence            46789999999988877788899999887421  22333221                1124679999999888777778


Q ss_pred             CEEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECC-CCeEEEEECCCCeEEEEEcCCCceE
Q 014345          102 MAIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGS-SCSLLVIDRGNRAIREIQLHFDDCA  172 (426)
Q Consensus       102 ~rIrk~d--~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~-~G~LYVaDsgN~rIr~I~l~~~~~~  172 (426)
                      +.|+.++  ++. +.++.+...                 ....+++.+. ++.++++-..++.|+.+++....+.
T Consensus       679 ~~v~vwd~~~~~~~~~~~~~~~-----------------~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~  736 (1249)
T 3sfz_A          679 KKVKIWDSATGKLVHTYDEHSE-----------------QVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECR  736 (1249)
T ss_dssp             SEEEEEETTTCCEEEEEECCSS-----------------CEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEE
T ss_pred             CeEEEEECCCCceEEEEcCCCC-----------------cEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchh
Confidence            8999999  444 344443110                 1234443222 3445556556677777776655443

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=90.21  E-value=4.5  Score=39.55  Aligned_cols=121  Identities=12%  Similarity=0.043  Sum_probs=74.1

Q ss_pred             CceEEEEcCC-CcEEEEECCCCeEEEEeCCCCc--------ccccEEEecCCCCcccccCCcccccccCCcceEEEcCCC
Q 014345           22 EPYSVEVLPG-GELLILDSANSNLYRISSSLSL--------YSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRG   92 (426)
Q Consensus        22 ~P~GIaVd~d-G~LYVaD~~n~rI~kid~dg~~--------~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG   92 (426)
                      .+..|++.++ +.++++-..++.|..++.....        ...+..+.+.                -....+|++++++
T Consensus       130 ~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h----------------~~~v~~l~~~~~~  193 (430)
T 2xyi_A          130 EVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGH----------------QKEGYGLSWNPNL  193 (430)
T ss_dssp             CCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECC----------------SSCCCCEEECTTS
T ss_pred             cEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCC----------------CCCeEEEEeCCCC
Confidence            6889999996 6788887778889888775310        0112222221                1135789999988


Q ss_pred             C-EEEEECCCCEEEEEc-CC-C-c-EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcC
Q 014345           93 N-IYIADTMNMAIRKIS-DS-G-V-TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLH  167 (426)
Q Consensus        93 ~-LYVADt~N~rIrk~d-~g-~-V-stIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~  167 (426)
                      . ++++-..++.|+.++ .. . . ..+......  .+         .-....+|++...++.++++...++.|+.+++.
T Consensus       194 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~--~~---------h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~  262 (430)
T 2xyi_A          194 NGYLLSASDDHTICLWDINATPKEHRVIDAKNIF--TG---------HTAVVEDVAWHLLHESLFGSVADDQKLMIWDTR  262 (430)
T ss_dssp             TTEEEEECTTSCEEEEETTSCCBGGGEEECSEEE--CC---------CSSCEEEEEECSSCTTEEEEEETTSEEEEEETT
T ss_pred             CCeEEEEeCCCeEEEEeCCCCCCCCceeccceee--cC---------CCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECC
Confidence            7 777777788899888 32 1 1 111100000  00         111346677543367888888888999999987


Q ss_pred             CC
Q 014345          168 FD  169 (426)
Q Consensus       168 ~~  169 (426)
                      ..
T Consensus       263 ~~  264 (430)
T 2xyi_A          263 NN  264 (430)
T ss_dssp             CS
T ss_pred             CC
Confidence            53

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=90.21  E-value=14  Score=38.00  Aligned_cols=139  Identities=13%  Similarity=0.015  Sum_probs=79.9

Q ss_pred             CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCC-CCcccccCCcccccccCCcceEEEcCCCCEEEEECC
Q 014345           22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSA-EGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTM  100 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~-~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~  100 (426)
                      ...+|++.++|.++++-...+.|+.++...   +......... ....++         -....+|+++++|.++++-..
T Consensus       192 ~V~~v~fspdg~~las~s~D~~i~lwd~~~---g~~~~~~~~~~~~~~~h---------~~~V~~v~~spdg~~l~s~s~  259 (611)
T 1nr0_A          192 FVHSVRYNPDGSLFASTGGDGTIVLYNGVD---GTKTGVFEDDSLKNVAH---------SGSVFGLTWSPDGTKIASASA  259 (611)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTT---CCEEEECBCTTSSSCSS---------SSCEEEEEECTTSSEEEEEET
T ss_pred             ceEEEEECCCCCEEEEEECCCcEEEEECCC---CcEeeeecccccccccc---------CCCEEEEEECCCCCEEEEEeC
Confidence            467899999999888888888999998653   2222221110 000011         123578999999998888777


Q ss_pred             CCEEEEEc--CCC-cEEEeCCccCC--------C-----CCCCCCC-------------cccccCCCCCeeEEECCCCeE
Q 014345          101 NMAIRKIS--DSG-VTTIAGGKWGR--------G-----GGHVDGP-------------SEDAKFSNDFDVVYIGSSCSL  151 (426)
Q Consensus       101 N~rIrk~d--~g~-VstIaGg~~g~--------~-----~G~~dG~-------------~~~a~f~~P~gIa~vd~~G~L  151 (426)
                      ++.|+.++  .+. +.++..+....        .     .+..+|.             .....-....+|+ +.++|.+
T Consensus       260 D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~-~spdg~~  338 (611)
T 1nr0_A          260 DKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALS-SSADGKT  338 (611)
T ss_dssp             TSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEE-ECTTSSE
T ss_pred             CCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEE-EeCCCCE
Confidence            88999998  333 33332210000        0     0000000             0001112345676 4677777


Q ss_pred             EEEECCCCeEEEEEcCCCceEe
Q 014345          152 LVIDRGNRAIREIQLHFDDCAY  173 (426)
Q Consensus       152 YVaDsgN~rIr~I~l~~~~~~~  173 (426)
                      +++-...+.|+.+++....+..
T Consensus       339 l~s~s~D~~v~~Wd~~~~~~~~  360 (611)
T 1nr0_A          339 LFSADAEGHINSWDISTGISNR  360 (611)
T ss_dssp             EEEEETTSCEEEEETTTCCEEE
T ss_pred             EEEEeCCCcEEEEECCCCceee
Confidence            7776677899999987655543

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=90.20  E-value=12  Score=35.03  Aligned_cols=112  Identities=11%  Similarity=0.052  Sum_probs=66.6

Q ss_pred             CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCC---------
Q 014345           22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRG---------   92 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG---------   92 (426)
                      .-.+++++++|+++++-...+.|..++..+..   ..... ..   .++         -..-..+++.+++         
T Consensus       120 ~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~---~~~~~-~~---~~~---------~~~v~~~~~~~~~~~~~~~~~~  183 (343)
T 2xzm_R          120 EVYSVAFSPDNRQILSAGAEREIKLWNILGEC---KFSSA-EK---ENH---------SDWVSCVRYSPIMKSANKVQPF  183 (343)
T ss_dssp             CEEEEEECSSTTEEEEEETTSCEEEEESSSCE---EEECC-TT---TSC---------SSCEEEEEECCCCCSCSCCCSS
T ss_pred             cEEEEEECCCCCEEEEEcCCCEEEEEeccCCc---eeeee-cc---cCC---------CceeeeeeeccccccccccCCC
Confidence            46788899988877776677888888876321   11111 00   011         0112345555554         


Q ss_pred             -CEEEEECCCCEEEEEcC-CCc-EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcC
Q 014345           93 -NIYIADTMNMAIRKISD-SGV-TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLH  167 (426)
Q Consensus        93 -~LYVADt~N~rIrk~d~-g~V-stIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~  167 (426)
                       .++++-..++.|+.++. ... .++.+-.                 .....|+ +.++|.++++-...+.|+.+++.
T Consensus       184 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~-----------------~~v~~~~-~s~~g~~l~sgs~dg~v~iwd~~  243 (343)
T 2xzm_R          184 APYFASVGWDGRLKVWNTNFQIRYTFKAHE-----------------SNVNHLS-ISPNGKYIATGGKDKKLLIWDIL  243 (343)
T ss_dssp             CCEEEEEETTSEEEEEETTTEEEEEEECCS-----------------SCEEEEE-ECTTSSEEEEEETTCEEEEEESS
T ss_pred             CCEEEEEcCCCEEEEEcCCCceeEEEcCcc-----------------ccceEEE-ECCCCCEEEEEcCCCeEEEEECC
Confidence             56666666788888883 322 2332210                 1235666 57788888877778899999874

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=90.12  E-value=12  Score=37.15  Aligned_cols=121  Identities=6%  Similarity=-0.012  Sum_probs=72.3

Q ss_pred             CceEEEEcCCCc-EEEEECCCCeEEEEeCCCCccccc-EEEecCCCCcccccCCcccccccCCcceEEEcCC-CCEEEEE
Q 014345           22 EPYSVEVLPGGE-LLILDSANSNLYRISSSLSLYSRP-KLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDR-GNIYIAD   98 (426)
Q Consensus        22 ~P~GIaVd~dG~-LYVaD~~n~rI~kid~dg~~~g~v-~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~d-G~LYVAD   98 (426)
                      ...++++.++|. ++++-...+.|..++...   ++. ..+.+..       ..      -.....+++.++ |+++++-
T Consensus       162 ~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~---~~~~~~~~~~~-------~~------~~~v~~~~~~~~~~~~l~~~  225 (615)
T 1pgu_A          162 RINACHLKQSRPMRSMTVGDDGSVVFYQGPP---FKFSASDRTHH-------KQ------GSFVRDVEFSPDSGEFVITV  225 (615)
T ss_dssp             CEEEEEECSSSSCEEEEEETTTEEEEEETTT---BEEEEEECSSS-------CT------TCCEEEEEECSTTCCEEEEE
T ss_pred             cEEEEEECCCCCcEEEEEeCCCcEEEEeCCC---cceeeeecccC-------CC------CceEEEEEECCCCCCEEEEE
Confidence            467899999887 677777788999998763   222 2222210       00      002468999999 9877777


Q ss_pred             CCCCEEEEEc--CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceE
Q 014345           99 TMNMAIRKIS--DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCA  172 (426)
Q Consensus        99 t~N~rIrk~d--~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~~  172 (426)
                      ..++.|+.++  .+..........   .+         .-.....+++ . ++.++++-..++.|+.+++....+.
T Consensus       226 ~~dg~i~vwd~~~~~~~~~~~~~~---~~---------~~~~v~~~~~-~-~~~~l~~~~~d~~i~~wd~~~~~~~  287 (615)
T 1pgu_A          226 GSDRKISCFDGKSGEFLKYIEDDQ---EP---------VQGGIFALSW-L-DSQKFATVGADATIRVWDVTTSKCV  287 (615)
T ss_dssp             ETTCCEEEEETTTCCEEEECCBTT---BC---------CCSCEEEEEE-S-SSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             eCCCeEEEEECCCCCEeEEecccc---cc---------cCCceEEEEE-c-CCCEEEEEcCCCcEEEEECCCCcEE
Confidence            6788899998  344322221000   00         0012345664 4 6666666666778888887755443

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=90.09  E-value=1.1  Score=42.16  Aligned_cols=113  Identities=9%  Similarity=0.002  Sum_probs=66.1

Q ss_pred             CceEEEEcCCCcEEEEECCCCeEEEEeCCCCc-ccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECC
Q 014345           22 EPYSVEVLPGGELLILDSANSNLYRISSSLSL-YSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTM  100 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~-~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~  100 (426)
                      .-.++++.++|+++++-...+.|..++..... ......+.+.                -.....|++.++|+++++-..
T Consensus        57 ~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~----------------~~~v~~~~~~~~~~~l~~~~~  120 (377)
T 3dwl_C           57 IVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRL----------------NRAATFVRWSPNEDKFAVGSG  120 (377)
T ss_dssp             CEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCC----------------SSCEEEEECCTTSSCCEEEES
T ss_pred             eEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeccc----------------CCceEEEEECCCCCEEEEEec
Confidence            46788999998877776677888888776321 0011111111                112467888888886666666


Q ss_pred             CCEEEEEc--CCC----cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcC
Q 014345          101 NMAIRKIS--DSG----VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLH  167 (426)
Q Consensus       101 N~rIrk~d--~g~----VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~  167 (426)
                      ++.|+.++  .+.    +..+.+..                -.....|+ +.+++.++++-..++.|+.+++.
T Consensus       121 d~~i~iwd~~~~~~~~~~~~~~~~h----------------~~~v~~~~-~~~~~~~l~~~~~d~~i~iwd~~  176 (377)
T 3dwl_C          121 ARVISVCYFEQENDWWVSKHLKRPL----------------RSTILSLD-WHPNNVLLAAGCADRKAYVLSAY  176 (377)
T ss_dssp             SSCEEECCC-----CCCCEEECSSC----------------CSCEEEEE-ECTTSSEEEEEESSSCEEEEEEC
T ss_pred             CCeEEEEEECCcccceeeeEeeccc----------------CCCeEEEE-EcCCCCEEEEEeCCCEEEEEEEE
Confidence            77888887  222    23333210                11345677 46677777776667889999875

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=90.04  E-value=3.6  Score=38.87  Aligned_cols=121  Identities=9%  Similarity=0.050  Sum_probs=74.3

Q ss_pred             CceEEEEcCCCcEEEEECCCCeEEEEeCCCCccc--ccEEEecCCCCcccccCCcccccccCCcceEEEcCC-CCEEEEE
Q 014345           22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYS--RPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDR-GNIYIAD   98 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g--~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~d-G~LYVAD   98 (426)
                      ...+++++++|.++++-..++.|..++......+  .+..+.+.                -.....|++.++ ++++++-
T Consensus        69 ~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h----------------~~~v~~~~~~~~~~~~l~s~  132 (416)
T 2pm9_A           69 KFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNH----------------SSSVKTVKFNAKQDNVLASG  132 (416)
T ss_dssp             CEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCS----------------SSCCCEEEECSSSTTBEEEE
T ss_pred             ceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCC----------------ccceEEEEEcCCCCCEEEEE
Confidence            4678999999987777667788999888641111  11222111                112467999987 7888777


Q ss_pred             CCCCEEEEEc-CCCc------EEE-eCCccCCCCCCCCCCcccccCCCCCeeEEECCC-CeEEEEECCCCeEEEEEcCCC
Q 014345           99 TMNMAIRKIS-DSGV------TTI-AGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSS-CSLLVIDRGNRAIREIQLHFD  169 (426)
Q Consensus        99 t~N~rIrk~d-~g~V------stI-aGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~-G~LYVaDsgN~rIr~I~l~~~  169 (426)
                      ..++.|+.++ ...-      ..+ ....             ...-.....+++ .++ +.++++-..++.|+.+++...
T Consensus       133 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~-------------~~~~~~v~~~~~-~~~~~~~l~~~~~dg~v~iwd~~~~  198 (416)
T 2pm9_A          133 GNNGEIFIWDMNKCTESPSNYTPLTPGQS-------------MSSVDEVISLAW-NQSLAHVFASAGSSNFASIWDLKAK  198 (416)
T ss_dssp             CSSSCEEBCBTTTTSSCTTTCCCBCCCCS-------------CCSSCCCCEEEE-CSSCTTEEEEESSSSCEEEEETTTT
T ss_pred             cCCCeEEEEECCCCccccccccccccccc-------------cCCCCCeeEEEe-CCCCCcEEEEEcCCCCEEEEECCCC
Confidence            7788899888 2221      111 0000             001123467774 555 677777777888999998775


Q ss_pred             ceE
Q 014345          170 DCA  172 (426)
Q Consensus       170 ~~~  172 (426)
                      .+.
T Consensus       199 ~~~  201 (416)
T 2pm9_A          199 KEV  201 (416)
T ss_dssp             EEE
T ss_pred             Ccc
Confidence            554

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=90.01  E-value=6.7  Score=36.07  Aligned_cols=112  Identities=8%  Similarity=0.034  Sum_probs=66.2

Q ss_pred             ceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcC--CCCEEEEECC
Q 014345           23 PYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD--RGNIYIADTM  100 (426)
Q Consensus        23 P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~--dG~LYVADt~  100 (426)
                      -..++++++|.++++-...+.|..++.++.....+.++.|.        .+        .-..|++.+  +|+++++=..
T Consensus        12 V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH--------~~--------~V~~v~~s~~~~g~~l~s~s~   75 (297)
T 2pm7_B           12 IHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGH--------EG--------PVWRVDWAHPKFGTILASCSY   75 (297)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCC--------SS--------CEEEEEECCGGGCSEEEEEET
T ss_pred             eEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccc--------cC--------CeEEEEecCCCcCCEEEEEcC
Confidence            56899999999888888888899888763211122333322        11        124677754  3777777777


Q ss_pred             CCEEEEEc--CCC---cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCC--CeEEEEECCCCeEEEEEcCC
Q 014345          101 NMAIRKIS--DSG---VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSS--CSLLVIDRGNRAIREIQLHF  168 (426)
Q Consensus       101 N~rIrk~d--~g~---VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~--G~LYVaDsgN~rIr~I~l~~  168 (426)
                      ++.|+.++  .+.   +.++.+..                 .....+++ .++  +.++++-...+.|+.+++..
T Consensus        76 D~~v~iWd~~~~~~~~~~~~~~h~-----------------~~v~~v~~-~p~~~g~~l~s~s~d~~v~~wd~~~  132 (297)
T 2pm7_B           76 DGKVMIWKEENGRWSQIAVHAVHS-----------------ASVNSVQW-APHEYGPMLLVASSDGKVSVVEFKE  132 (297)
T ss_dssp             TTEEEEEEBSSSCBCCCEEECCCS-----------------SCEEEEEE-CCGGGCSEEEEEETTSEEEEEEBCS
T ss_pred             CCEEEEEEcCCCceEEEEEeecCC-----------------CceeEEEe-CcCCCCcEEEEEECCCcEEEEEecC
Confidence            78888888  332   22332210                 01245553 333  55555555667787777654

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=89.96  E-value=10  Score=33.85  Aligned_cols=110  Identities=13%  Similarity=0.069  Sum_probs=67.7

Q ss_pred             CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCC
Q 014345           22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN  101 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N  101 (426)
                      ....+++.++|.| ++-...+.|..++.....  .+..+.+.                -.....|+++++|.|+.+. .+
T Consensus       186 ~i~~~~~~~~~~~-~~~~~dg~i~i~d~~~~~--~~~~~~~~----------------~~~i~~~~~~~~~~l~~~~-~d  245 (313)
T 3odt_A          186 VVRHLAVVDDGHF-ISCSNDGLIKLVDMHTGD--VLRTYEGH----------------ESFVYCIKLLPNGDIVSCG-ED  245 (313)
T ss_dssp             CEEEEEEEETTEE-EEEETTSEEEEEETTTCC--EEEEEECC----------------SSCEEEEEECTTSCEEEEE-TT
T ss_pred             cEEEEEEcCCCeE-EEccCCCeEEEEECCchh--hhhhhhcC----------------CceEEEEEEecCCCEEEEe-cC
Confidence            4678888888884 444467788888876321  12222221                1125689999998766555 47


Q ss_pred             CEEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCc
Q 014345          102 MAIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDD  170 (426)
Q Consensus       102 ~rIrk~d--~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~  170 (426)
                      +.|+.++  .+. +.++.+..                 .....++ ..+++.|+++. .++.|+.+++....
T Consensus       246 g~v~iwd~~~~~~~~~~~~~~-----------------~~i~~~~-~~~~~~~~~~~-~dg~i~iw~~~~~~  298 (313)
T 3odt_A          246 RTVRIWSKENGSLKQVITLPA-----------------ISIWSVD-CMSNGDIIVGS-SDNLVRIFSQEKSR  298 (313)
T ss_dssp             SEEEEECTTTCCEEEEEECSS-----------------SCEEEEE-ECTTSCEEEEE-TTSCEEEEESCGGG
T ss_pred             CEEEEEECCCCceeEEEeccC-----------------ceEEEEE-EccCCCEEEEe-CCCcEEEEeCCCCc
Confidence            8899999  444 34443310                 1235666 56777765554 46889999877543

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=89.96  E-value=3.5  Score=39.43  Aligned_cols=72  Identities=11%  Similarity=0.166  Sum_probs=41.4

Q ss_pred             cceEEEcCC-CCEEEEECCCCEEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCC-eEEEEECC
Q 014345           83 PKGLTVDDR-GNIYIADTMNMAIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSC-SLLVIDRG  157 (426)
Q Consensus        83 P~GIaVd~d-G~LYVADt~N~rIrk~d--~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G-~LYVaDsg  157 (426)
                      +..|++.++ +.++++-..++.|+.++  .+. +.++.+..                 ..-..|++ .+++ .++++-..
T Consensus       229 v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~-----------------~~v~~l~~-sp~~~~~lasgs~  290 (357)
T 4g56_B          229 PTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHS-----------------QNITGLAY-SYHSSPFLASISE  290 (357)
T ss_dssp             EEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCS-----------------SCEEEEEE-CSSSSCCEEEEET
T ss_pred             ccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccc-----------------eeEEEEEE-cCCCCCEEEEEeC
Confidence            567888876 46776655678888888  333 44554311                 01245553 3333 45555555


Q ss_pred             CCeEEEEEcCCCceE
Q 014345          158 NRAIREIQLHFDDCA  172 (426)
Q Consensus       158 N~rIr~I~l~~~~~~  172 (426)
                      ++.|+.+++....+.
T Consensus       291 D~~i~iwd~~~~~~~  305 (357)
T 4g56_B          291 DCTVAVLDADFSEVF  305 (357)
T ss_dssp             TSCEEEECTTSCEEE
T ss_pred             CCEEEEEECCCCcEe
Confidence            667777776654443

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=89.69  E-value=1.5  Score=44.81  Aligned_cols=114  Identities=10%  Similarity=-0.037  Sum_probs=64.0

Q ss_pred             eEEEEcCCCcEEEE---ECCC-CeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCC-EEEEE
Q 014345           24 YSVEVLPGGELLIL---DSAN-SNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIAD   98 (426)
Q Consensus        24 ~GIaVd~dG~LYVa---D~~n-~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~-LYVAD   98 (426)
                      ..++++|||..++.   |..+ ..|++++.++   +....+.+..        +        ....+++.+||+ |+.++
T Consensus       153 ~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~---g~~~~l~~~~--------~--------~~~~~~~SpDG~~l~~~~  213 (582)
T 3o4h_A          153 FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSS---GGLRVFDSGE--------G--------SFSSASISPGMKVTAGLE  213 (582)
T ss_dssp             CEEEEEEETTEEEEEEEEETTEEEEEEEETTT---CCCEEECCSS--------C--------EEEEEEECTTSCEEEEEE
T ss_pred             ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCC---CCceEeecCC--------C--------ccccceECCCCCEEEEcc
Confidence            67889999985552   2122 5688898765   4455553321        1        126789999998 44444


Q ss_pred             CCC-CEEEEEc-CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEc
Q 014345           99 TMN-MAIRKIS-DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQL  166 (426)
Q Consensus        99 t~N-~rIrk~d-~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l  166 (426)
                      ..+ ..|+.++ +++ .. +..+....    .....    -..+...+ ++++|.||++-..+++++.+..
T Consensus       214 ~~~~~~i~~~d~~~~~~~-~~~~~~~~----~~~~~----~~~~~~~~-~spdg~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          214 TAREARLVTVDPRDGSVE-DLELPSKD----FSSYR----PTAITWLG-YLPDGRLAVVARREGRSAVFID  274 (582)
T ss_dssp             CSSCEEEEEECTTTCCEE-ECCCSCSH----HHHHC----CSEEEEEE-ECTTSCEEEEEEETTEEEEEET
T ss_pred             CCCeeEEEEEcCCCCcEE-EccCCCcC----hhhhh----hcccccee-EcCCCcEEEEEEcCCcEEEEEE
Confidence            432 3899998 444 44 33211000    00000    00112223 4677888887777788888877

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=89.62  E-value=5.1  Score=39.24  Aligned_cols=117  Identities=10%  Similarity=0.047  Sum_probs=71.4

Q ss_pred             CceEEEEcCCCcE-EEEECCCCeEEEEeCC--CCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEE
Q 014345           22 EPYSVEVLPGGEL-LILDSANSNLYRISSS--LSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIAD   98 (426)
Q Consensus        22 ~P~GIaVd~dG~L-YVaD~~n~rI~kid~d--g~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVAD   98 (426)
                      ...+++++++|.. +++-...+.|..++..  ..  ..+..+.+..     .         -..+..|+++++|..+++-
T Consensus       104 ~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~--~~~~~~~~~~-----~---------~~~v~~~~~sp~~~~l~~~  167 (450)
T 2vdu_B          104 YIRNLRLTSDESRLIACADSDKSLLVFDVDKTSK--NVLKLRKRFC-----F---------SKRPNAISIAEDDTTVIIA  167 (450)
T ss_dssp             CEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSS--SCEEEEEEEE-----C---------SSCEEEEEECTTSSEEEEE
T ss_pred             ceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCC--ceeeeeeccc-----C---------CCCceEEEEcCCCCEEEEE
Confidence            4689999999986 4776677888888765  32  1223332110     0         1236789999998755554


Q ss_pred             CCCCEEEEEc--CCCcE-----EEeCCccCCCCCCCCCCcccccCCCCCeeEEECCC---CeEEEEECCCCeEEEEEcCC
Q 014345           99 TMNMAIRKIS--DSGVT-----TIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSS---CSLLVIDRGNRAIREIQLHF  168 (426)
Q Consensus        99 t~N~rIrk~d--~g~Vs-----tIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~---G~LYVaDsgN~rIr~I~l~~  168 (426)
                      ..++.|+.++  ++...     ++.+                 ......+|++ .++   +.++++-...+.|+.+++..
T Consensus       168 ~~~g~v~~~~~~~~~~~~~~~~~~~~-----------------h~~~v~~~~~-sp~~~~~~~l~s~~~d~~i~vwd~~~  229 (450)
T 2vdu_B          168 DKFGDVYSIDINSIPEEKFTQEPILG-----------------HVSMLTDVHL-IKDSDGHQFIITSDRDEHIKISHYPQ  229 (450)
T ss_dssp             ETTSEEEEEETTSCCCSSCCCCCSEE-----------------CSSCEEEEEE-EECTTSCEEEEEEETTSCEEEEEESC
T ss_pred             eCCCcEEEEecCCcccccccceeeec-----------------ccCceEEEEE-cCCCCCCcEEEEEcCCCcEEEEECCC
Confidence            4578888887  22221     1111                 1123466774 555   76666666678999999876


Q ss_pred             CceE
Q 014345          169 DDCA  172 (426)
Q Consensus       169 ~~~~  172 (426)
                      ..+.
T Consensus       230 ~~~~  233 (450)
T 2vdu_B          230 CFIV  233 (450)
T ss_dssp             TTCE
T ss_pred             Ccee
Confidence            5544

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=89.42  E-value=9  Score=35.81  Aligned_cols=116  Identities=12%  Similarity=-0.008  Sum_probs=68.3

Q ss_pred             CceEEEEcCCCcEEEEECCCCeEEEEeCCCCccccc-EEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECC
Q 014345           22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRP-KLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTM  100 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v-~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~  100 (426)
                      ....++++++|.++++-..++.|..++.....  .+ ..+.+      ++         -.....|++.++|.+.++-..
T Consensus       172 ~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~--~~~~~~~~------~h---------~~~v~~l~fs~~g~~l~s~~~  234 (343)
T 3lrv_A          172 EYSSGVLHKDSLLLALYSPDGILDVYNLSSPD--QASSRFPV------DE---------EAKIKEVKFADNGYWMVVECD  234 (343)
T ss_dssp             CCCEEEECTTSCEEEEECTTSCEEEEESSCTT--SCCEECCC------CT---------TSCEEEEEECTTSSEEEEEES
T ss_pred             ceEEEEECCCCCEEEEEcCCCEEEEEECCCCC--CCccEEec------cC---------CCCEEEEEEeCCCCEEEEEeC
Confidence            36788999999988887788889999886421  11 22221      01         112568999999986666554


Q ss_pred             CCEEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECC-CCeEEEEEcCC
Q 014345          101 NMAIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRG-NRAIREIQLHF  168 (426)
Q Consensus       101 N~rIrk~d--~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsg-N~rIr~I~l~~  168 (426)
                       +.|+.+|  .+. +.++..-.        .   ....... ..++ ++++|.++++-.+ ++.|+.++...
T Consensus       235 -~~v~iwd~~~~~~~~~~~~~~--------~---~~~~~~~-~~~~-~~~~g~~l~~~s~~d~~i~v~~~~~  292 (343)
T 3lrv_A          235 -QTVVCFDLRKDVGTLAYPTYT--------I---PEFKTGT-VTYD-IDDSGKNMIAYSNESNSLTIYKFDK  292 (343)
T ss_dssp             -SBEEEEETTSSTTCBSSCCCB--------C--------CC-EEEE-ECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             -CeEEEEEcCCCCcceeecccc--------c---ccccccc-eEEE-ECCCCCEEEEecCCCCcEEEEEEcc
Confidence             3899988  222 22221100        0   0001111 3477 5778877666444 77888887754

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=89.30  E-value=5.8  Score=36.35  Aligned_cols=72  Identities=15%  Similarity=0.146  Sum_probs=50.2

Q ss_pred             CceEEEEcC-CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECC
Q 014345           22 EPYSVEVLP-GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTM  100 (426)
Q Consensus        22 ~P~GIaVd~-dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~  100 (426)
                      ...+|++.+ +++++++-...+.|..++...   +.........   .++         -.....|+++++|+.+++-..
T Consensus       117 ~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~---~~~~~~~~~~---~~~---------~~~v~~~~~~~~~~~l~~~~~  181 (366)
T 3k26_A          117 AINELKFHPRDPNLLLSVSKDHALRLWNIQT---DTLVAIFGGV---EGH---------RDEVLSADYDLLGEKIMSCGM  181 (366)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSCEEEEETTT---TEEEEEECST---TSC---------SSCEEEEEECTTSSEEEEEET
T ss_pred             cEEEEEECCCCCCEEEEEeCCCeEEEEEeec---CeEEEEeccc---ccc---------cCceeEEEECCCCCEEEEecC
Confidence            578899998 888877777788999998864   2322222110   111         123578999999987777777


Q ss_pred             CCEEEEEc
Q 014345          101 NMAIRKIS  108 (426)
Q Consensus       101 N~rIrk~d  108 (426)
                      ++.|+.++
T Consensus       182 dg~i~i~d  189 (366)
T 3k26_A          182 DHSLKLWR  189 (366)
T ss_dssp             TSCEEEEE
T ss_pred             CCCEEEEE
Confidence            88899998

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=89.00  E-value=7.3  Score=37.04  Aligned_cols=125  Identities=10%  Similarity=0.029  Sum_probs=73.9

Q ss_pred             CceEEEEcCCCcEEEEECCCCe-EEEEeCCCCcccccEEEe-cCCCCcccccCCcccccccCCcceEEEcCCCCEEEEEC
Q 014345           22 EPYSVEVLPGGELLILDSANSN-LYRISSSLSLYSRPKLVA-GSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADT   99 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n~r-I~kid~dg~~~g~v~~va-G~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt   99 (426)
                      ...+|+++++|.++++-...+. |..++.....  .+..+. |.      +         -..-..|+++++|.++++-.
T Consensus       197 ~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~--~~~~~~~g~------h---------~~~v~~~~~s~~~~~l~s~s  259 (355)
T 3vu4_A          197 PIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGV--LVREFRRGL------D---------RADVVDMKWSTDGSKLAVVS  259 (355)
T ss_dssp             CEEEEEECTTSSEEEEEETTCSEEEEEETTTCC--EEEEEECTT------C---------CSCEEEEEECTTSCEEEEEE
T ss_pred             ceEEEEECCCCCEEEEEeCCCCEEEEEECCCCc--EEEEEEcCC------C---------CCcEEEEEECCCCCEEEEEE
Confidence            4689999999998888888887 9999887421  223332 21      0         11246899999999888877


Q ss_pred             CCCEEEEEc--CCC---cEEEeCCccCCCCCCCCCCc--ccccCC----CC-CeeEEECCCCeEEEEECCCCeEEEEEcC
Q 014345          100 MNMAIRKIS--DSG---VTTIAGGKWGRGGGHVDGPS--EDAKFS----ND-FDVVYIGSSCSLLVIDRGNRAIREIQLH  167 (426)
Q Consensus       100 ~N~rIrk~d--~g~---VstIaGg~~g~~~G~~dG~~--~~a~f~----~P-~gIa~vd~~G~LYVaDsgN~rIr~I~l~  167 (426)
                      .++.|+.++  .+.   ...+.+-...   .......  ....+.    .+ ..++ ..+++..+++-..++++++++..
T Consensus       260 ~d~~v~iw~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~a-~~~d~~~l~~~~~dg~~~~~~~~  335 (355)
T 3vu4_A          260 DKWTLHVFEIFNDQDNKRHALKGWINM---KYFQSEWSLCNFKLSVDKHVRGCKIA-WISESSLVVVWPHTRMIETFKVV  335 (355)
T ss_dssp             TTCEEEEEESSCCSCCCSEETTTTEEC---CCCCCSSCSEEEECCCCTTCCCCEEE-ESSSSEEEEEETTTTEEEEEEEE
T ss_pred             CCCEEEEEEccCCCCcccccccceeec---cccccccceeEEEeccCCCCCceEEE-EeCCCCEEEEEeCCCeEEEEEEE
Confidence            788999988  221   1111110000   0000000  000010    11 3344 68888887777778888888754

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=88.71  E-value=7.7  Score=38.64  Aligned_cols=111  Identities=7%  Similarity=0.146  Sum_probs=71.6

Q ss_pred             CCceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcC----------
Q 014345           21 IEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD----------   90 (426)
Q Consensus        21 ~~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~----------   90 (426)
                      .....++++++|.++++-...+.|..++....   .  .+.--    .+.        .-.....|++.+          
T Consensus       489 ~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~---~--~~~~~----~~~--------h~~~v~~~~~sp~~~~~~~~~~  551 (615)
T 1pgu_A          489 AKPSYISISPSETYIAAGDVMGKILLYDLQSR---E--VKTSR----WAF--------RTSKINAISWKPAEKGANEEEI  551 (615)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTT---E--EEECC----SCC--------CSSCEEEEEECCCC------CC
T ss_pred             CceEEEEECCCCCEEEEcCCCCeEEEeeCCCC---c--ceeEe----ecC--------CCCceeEEEEcCcccccccccc
Confidence            35789999999998887778889999988632   2  12111    110        012357899998          


Q ss_pred             CCCEEEEECCCCEEEEEc--CC-C-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEc
Q 014345           91 RGNIYIADTMNMAIRKIS--DS-G-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQL  166 (426)
Q Consensus        91 dG~LYVADt~N~rIrk~d--~g-~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l  166 (426)
                      +|.++++-..++.|+.++  .+ . +.++.+-                 -....+|++ .+++. +++-...+.|+.+++
T Consensus       552 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h-----------------~~~v~~l~~-s~~~~-l~s~~~d~~v~iw~~  612 (615)
T 1pgu_A          552 EEDLVATGSLDTNIFIYSVKRPMKIIKALNAH-----------------KDGVNNLLW-ETPST-LVSSGADACIKRWNV  612 (615)
T ss_dssp             SCCEEEEEETTSCEEEEESSCTTCCEEETTSS-----------------TTCEEEEEE-EETTE-EEEEETTSCEEEEEE
T ss_pred             CCCEEEEEcCCCcEEEEECCCCceechhhhcC-----------------ccceEEEEE-cCCCC-eEEecCCceEEEEee
Confidence            898888777788899888  33 2 2222211                 113466774 56677 666666788888876


Q ss_pred             C
Q 014345          167 H  167 (426)
Q Consensus       167 ~  167 (426)
                      .
T Consensus       613 ~  613 (615)
T 1pgu_A          613 V  613 (615)
T ss_dssp             C
T ss_pred             e
Confidence            5

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=88.55  E-value=7.7  Score=37.03  Aligned_cols=128  Identities=9%  Similarity=0.024  Sum_probs=74.5

Q ss_pred             CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEe-cCCCCcccccCCcccccccCCcceEEEcCCC-CEEEEEC
Q 014345           22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVA-GSAEGYSGHVDGKPREARMNHPKGLTVDDRG-NIYIADT   99 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~va-G~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG-~LYVADt   99 (426)
                      ...++++.++|+++++- ..+.|..++....  +....+. -......++         -.....++++++| +++++-.
T Consensus       179 ~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~---------~~~v~~~~~~p~~~~~l~s~~  246 (447)
T 3dw8_B          179 HINSISINSDYETYLSA-DDLRINLWHLEIT--DRSFNIVDIKPANMEEL---------TEVITAAEFHPNSCNTFVYSS  246 (447)
T ss_dssp             CCCEEEECTTSSEEEEE-CSSEEEEEETTEE--EEEEEEEECCCSSGGGC---------CCCEEEEEECSSCTTEEEEEE
T ss_pred             ceEEEEEcCCCCEEEEe-CCCeEEEEECCCC--Cceeeeeeccccccccc---------CcceEEEEECCCCCcEEEEEe
Confidence            46799999999988876 6889999988721  1111111 111011111         1235789999998 8888777


Q ss_pred             CCCEEEEEc--CCCc-----EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCC
Q 014345          100 MNMAIRKIS--DSGV-----TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHF  168 (426)
Q Consensus       100 ~N~rIrk~d--~g~V-----stIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~  168 (426)
                      .++.|+.++  .+..     .++.+.....     ..............|+ +.+++.++++-.. +.|+.+++..
T Consensus       247 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~v~~~~-~s~~g~~l~~~~~-~~v~iwd~~~  315 (447)
T 3dw8_B          247 SKGTIRLCDMRASALCDRHSKLFEEPEDPS-----NRSFFSEIISSISDVK-FSHSGRYMMTRDY-LSVKVWDLNM  315 (447)
T ss_dssp             TTSCEEEEETTTCSSSCTTCEEECCC----------CCHHHHHTTCEEEEE-ECTTSSEEEEEES-SEEEEEETTC
T ss_pred             CCCeEEEEECcCCccccceeeEeccCCCcc-----ccccccccCceEEEEE-ECCCCCEEEEeeC-CeEEEEeCCC
Confidence            788899998  3332     3333211000     0000000111345677 5677877666666 8999999864

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=88.54  E-value=11  Score=41.79  Aligned_cols=113  Identities=8%  Similarity=0.026  Sum_probs=71.7

Q ss_pred             CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcC--CCCEEEEEC
Q 014345           22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD--RGNIYIADT   99 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~--dG~LYVADt   99 (426)
                      ...+++++++|.++++-..++.|..++.....  .+..+.+..                ..-..+++.+  ++.++++-.
T Consensus       659 ~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~--~~~~~~~~~----------------~~v~~~~~~~~~~~~~l~sg~  720 (1249)
T 3sfz_A          659 EVLCCAFSSDDSYIATCSADKKVKIWDSATGK--LVHTYDEHS----------------EQVNCCHFTNKSNHLLLATGS  720 (1249)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTTCC--EEEEEECCS----------------SCEEEEEECSSSSCCEEEEEE
T ss_pred             CEEEEEEecCCCEEEEEeCCCeEEEEECCCCc--eEEEEcCCC----------------CcEEEEEEecCCCceEEEEEe
Confidence            56789999999888877778899999887421  122332221                1235677777  445777766


Q ss_pred             CCCEEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCc
Q 014345          100 MNMAIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDD  170 (426)
Q Consensus       100 ~N~rIrk~d--~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~  170 (426)
                      .++.|+.++  .+. +.++.+..                 .....++ +.+++.++++-...+.|+.+++....
T Consensus       721 ~d~~v~vwd~~~~~~~~~~~~h~-----------------~~v~~~~-~sp~~~~l~s~s~dg~v~vwd~~~~~  776 (1249)
T 3sfz_A          721 NDFFLKLWDLNQKECRNTMFGHT-----------------NSVNHCR-FSPDDELLASCSADGTLRLWDVRSAN  776 (1249)
T ss_dssp             TTSCEEEEETTSSSEEEEECCCS-----------------SCEEEEE-ECSSTTEEEEEESSSEEEEEEGGGTE
T ss_pred             CCCeEEEEECCCcchhheecCCC-----------------CCEEEEE-EecCCCEEEEEECCCeEEEEeCCCCc
Confidence            778888888  333 33443310                 1235566 46677777766667888888876543

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=88.52  E-value=8.2  Score=36.17  Aligned_cols=112  Identities=14%  Similarity=0.176  Sum_probs=71.4

Q ss_pred             ceEEEE-----cC-CCcEEEEECCCCeEEEEeCCCCc----cccc-EEEecCCCCcccccCCcccccccCCcceEEEcCC
Q 014345           23 PYSVEV-----LP-GGELLILDSANSNLYRISSSLSL----YSRP-KLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDR   91 (426)
Q Consensus        23 P~GIaV-----d~-dG~LYVaD~~n~rI~kid~dg~~----~g~v-~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~d   91 (426)
                      -.+|++     .+ +|.++++-...+.|+.++.....    .+.. ..+.|       +         -..-..|++.++
T Consensus        24 V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~-------h---------~~~V~~~~~~~~   87 (343)
T 2xzm_R           24 VTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTG-------H---------NHFVSDLALSQE   87 (343)
T ss_dssp             EEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECC-------C---------SSCEEEEEECSS
T ss_pred             hhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhcc-------C---------CCceEEEEECCC
Confidence            577888     65 88888888788888888765211    0111 11111       1         112467899999


Q ss_pred             CCEEEEECCCCEEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCC
Q 014345           92 GNIYIADTMNMAIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHF  168 (426)
Q Consensus        92 G~LYVADt~N~rIrk~d--~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~  168 (426)
                      +.+.++-..++.|+.++  .+. +.++.+-.                 ..-..|+ +.+++.++++-...+.|+.+++.+
T Consensus        88 ~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~-----------------~~v~~v~-~sp~~~~l~s~~~d~~i~~wd~~~  149 (343)
T 2xzm_R           88 NCFAISSSWDKTLRLWDLRTGTTYKRFVGHQ-----------------SEVYSVA-FSPDNRQILSAGAEREIKLWNILG  149 (343)
T ss_dssp             TTEEEEEETTSEEEEEETTSSCEEEEEECCC-----------------SCEEEEE-ECSSTTEEEEEETTSCEEEEESSS
T ss_pred             CCEEEEEcCCCcEEEEECCCCcEEEEEcCCC-----------------CcEEEEE-ECCCCCEEEEEcCCCEEEEEeccC
Confidence            99888888889999998  344 34444311                 1234666 466776666666678888888764

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=88.41  E-value=15  Score=33.53  Aligned_cols=68  Identities=9%  Similarity=-0.019  Sum_probs=48.7

Q ss_pred             CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEE--cCCCCEEEEEC
Q 014345           22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTV--DDRGNIYIADT   99 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaV--d~dG~LYVADt   99 (426)
                      ...++++.++|+++++-..++.|..++.+.   +......+.                -.....|++  ++++.++++-.
T Consensus        88 ~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~---~~~~~~~~~----------------~~~v~~~~~~~~~~~~~l~~~~  148 (368)
T 3mmy_A           88 PVLDVCWSDDGSKVFTASCDKTAKMWDLSS---NQAIQIAQH----------------DAPVKTIHWIKAPNYSCVMTGS  148 (368)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTT---TEEEEEEEC----------------SSCEEEEEEEECSSCEEEEEEE
T ss_pred             CEEEEEECcCCCEEEEEcCCCcEEEEEcCC---CCceeeccc----------------cCceEEEEEEeCCCCCEEEEcc
Confidence            467899999998777777788999998874   233333222                112467888  78888777776


Q ss_pred             CCCEEEEEc
Q 014345          100 MNMAIRKIS  108 (426)
Q Consensus       100 ~N~rIrk~d  108 (426)
                      .++.|+.++
T Consensus       149 ~dg~i~vwd  157 (368)
T 3mmy_A          149 WDKTLKFWD  157 (368)
T ss_dssp             TTSEEEEEC
T ss_pred             CCCcEEEEE
Confidence            788999998

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=88.39  E-value=22  Score=36.64  Aligned_cols=118  Identities=7%  Similarity=0.005  Sum_probs=63.8

Q ss_pred             CceEEEEcCCCc-EEEEECCC----CeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcC--CCCE
Q 014345           22 EPYSVEVLPGGE-LLILDSAN----SNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD--RGNI   94 (426)
Q Consensus        22 ~P~GIaVd~dG~-LYVaD~~n----~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~--dG~L   94 (426)
                      .+..+++++||. |+++....    ..|+.++..++.  ....+....  ..+         -.+....+++.+  +|.+
T Consensus       259 ~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~--~~~~~~~~~--~~~---------~~~~~~~~~~sp~~dg~~  325 (706)
T 2z3z_A          259 FLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGR--FVRTLFVET--DKH---------YVEPLHPLTFLPGSNNQF  325 (706)
T ss_dssp             EEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCC--EEEEEEEEE--CSS---------CCCCCSCCEECTTCSSEE
T ss_pred             eEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCc--eeeEEEEcc--CCC---------eECccCCceeecCCCCEE
Confidence            467899999998 66543222    378889887521  333333210  000         011235678888  8875


Q ss_pred             EEEE-C-CCCEEEEEc-CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCe-eEEECCCC-eEEEEECCCC----eEEEE
Q 014345           95 YIAD-T-MNMAIRKIS-DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFD-VVYIGSSC-SLLVIDRGNR----AIREI  164 (426)
Q Consensus        95 YVAD-t-~N~rIrk~d-~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~g-Ia~vd~~G-~LYVaDsgN~----rIr~I  164 (426)
                      +++- . +..+|+.++ +++ +..+.++..                 .... ++ ++++| .||++...++    .|+.+
T Consensus       326 l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~-----------------~v~~~~~-~spdg~~l~~~~~~~~~~~~~l~~~  387 (706)
T 2z3z_A          326 IWQSRRDGWNHLYLYDTTGRLIRQVTKGEW-----------------EVTNFAG-FDPKGTRLYFESTEASPLERHFYCI  387 (706)
T ss_dssp             EEEECTTSSCEEEEEETTSCEEEECCCSSS-----------------CEEEEEE-ECTTSSEEEEEESSSCTTCBEEEEE
T ss_pred             EEEEccCCccEEEEEECCCCEEEecCCCCe-----------------EEEeeeE-EcCCCCEEEEEecCCCCceEEEEEE
Confidence            5443 2 235777777 555 344433210                 0112 34 45555 5777666544    78888


Q ss_pred             EcCCCc
Q 014345          165 QLHFDD  170 (426)
Q Consensus       165 ~l~~~~  170 (426)
                      ++.+..
T Consensus       388 d~~~~~  393 (706)
T 2z3z_A          388 DIKGGK  393 (706)
T ss_dssp             ETTCCC
T ss_pred             EcCCCC
Confidence            776543

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=88.20  E-value=9.7  Score=39.71  Aligned_cols=118  Identities=12%  Similarity=0.070  Sum_probs=72.8

Q ss_pred             CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCC
Q 014345           22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN  101 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N  101 (426)
                      .-.+|+++++|.++++-...+.|+.++.....  .+..+.|..                ..-..|+++++|+.+++-..+
T Consensus       432 ~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~--~~~~~~~h~----------------~~v~~~~~s~~~~~l~s~s~D  493 (694)
T 3dm0_A          432 FVEDVVLSSDGQFALSGSWDGELRLWDLAAGV--STRRFVGHT----------------KDVLSVAFSLDNRQIVSASRD  493 (694)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTTTE--EEEEEECCS----------------SCEEEEEECTTSSCEEEEETT
T ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEECCCCc--ceeEEeCCC----------------CCEEEEEEeCCCCEEEEEeCC
Confidence            35688999999988888788899999886421  123333221                124678999999877777778


Q ss_pred             CEEEEEc-CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCC--eEEEEECCCCeEEEEEcCCCce
Q 014345          102 MAIRKIS-DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSC--SLLVIDRGNRAIREIQLHFDDC  171 (426)
Q Consensus       102 ~rIrk~d-~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G--~LYVaDsgN~rIr~I~l~~~~~  171 (426)
                      +.|+.++ .+. ..++.....    ++         -..-.++++ .+++  .++++-...+.|+.+++....+
T Consensus       494 ~~i~iwd~~~~~~~~~~~~~~----~h---------~~~v~~~~~-~~~~~~~~l~s~s~d~~v~vwd~~~~~~  553 (694)
T 3dm0_A          494 RTIKLWNTLGECKYTISEGGE----GH---------RDWVSCVRF-SPNTLQPTIVSASWDKTVKVWNLSNCKL  553 (694)
T ss_dssp             SCEEEECTTSCEEEEECSSTT----SC---------SSCEEEEEE-CSCSSSCEEEEEETTSCEEEEETTTCCE
T ss_pred             CEEEEEECCCCcceeeccCCC----CC---------CCcEEEEEE-eCCCCcceEEEEeCCCeEEEEECCCCcE
Confidence            8999999 333 233322110    11         112345553 4443  4566666677888888765544

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=87.85  E-value=10  Score=36.63  Aligned_cols=109  Identities=15%  Similarity=0.119  Sum_probs=65.0

Q ss_pred             EEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCCCEEEE
Q 014345           27 EVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMAIRK  106 (426)
Q Consensus        27 aVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N~rIrk  106 (426)
                      +++++++++++-...+.|..++.....  .+..+.+.                -.....++++++|+.+++-..++.|+.
T Consensus       275 ~~~~~~~~l~~~~~d~~i~vwd~~~~~--~~~~~~~~----------------~~~v~~~~~~~~~~~l~sg~~dg~i~v  336 (464)
T 3v7d_B          275 TVSGHGNIVVSGSYDNTLIVWDVAQMK--CLYILSGH----------------TDRIYSTIYDHERKRCISASMDTTIRI  336 (464)
T ss_dssp             EEEEETTEEEEEETTSCEEEEETTTTE--EEEEECCC----------------SSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCc--EEEEecCC----------------CCCEEEEEEcCCCCEEEEEeCCCcEEE
Confidence            445667777776678888888876321  12222221                112467999999998888777889999


Q ss_pred             Ec--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceEe
Q 014345          107 IS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAY  173 (426)
Q Consensus       107 ~d--~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~~~  173 (426)
                      ++  .+. +.++.+..                 .....+++ +  +..+++-...+.|+.+++.......
T Consensus       337 wd~~~~~~~~~~~~h~-----------------~~v~~~~~-~--~~~l~s~s~dg~v~vwd~~~~~~~~  386 (464)
T 3v7d_B          337 WDLENGELMYTLQGHT-----------------ALVGLLRL-S--DKFLVSAAADGSIRGWDANDYSRKF  386 (464)
T ss_dssp             EETTTTEEEEEECCCS-----------------SCEEEEEE-C--SSEEEEEETTSEEEEEETTTCCEEE
T ss_pred             EECCCCcEEEEEeCCC-----------------CcEEEEEE-c--CCEEEEEeCCCcEEEEECCCCceee
Confidence            99  333 33443210                 01234442 2  4555555556788888877654443

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=87.23  E-value=14  Score=32.17  Aligned_cols=69  Identities=22%  Similarity=0.254  Sum_probs=43.7

Q ss_pred             CceEEEEcCCCcEEEEECCCCeEEEEeCCC-CcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEEC-
Q 014345           22 EPYSVEVLPGGELLILDSANSNLYRISSSL-SLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADT-   99 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg-~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt-   99 (426)
                      ...+++++++|..+++.. .+.|+.++.++ .   ....+...      .        .-.....++++++|..+++-. 
T Consensus        43 ~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~---~~~~~~~~------~--------~~~~~~~~~~spdg~~l~~~~~  104 (297)
T 2ojh_A           43 LFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDP---SPEKVDTG------F--------ATICNNDHGISPDGALYAISDK  104 (297)
T ss_dssp             CCEEEEECTTSSEEEEEE-TTEEEEEESSSCC---SCEECCCT------T--------CCCBCSCCEECTTSSEEEEEEC
T ss_pred             ceEeeEECCCCCEEEEEc-CCeEEEEeCCCCC---CceEeccc------c--------ccccccceEECCCCCEEEEEEe
Confidence            578999999999666553 67999998874 2   22222211      0        012356789999987444433 


Q ss_pred             ---CCCEEEEEc
Q 014345          100 ---MNMAIRKIS  108 (426)
Q Consensus       100 ---~N~rIrk~d  108 (426)
                         ...+|+.++
T Consensus       105 ~~~~~~~l~~~~  116 (297)
T 2ojh_A          105 VEFGKSAIYLLP  116 (297)
T ss_dssp             TTTSSCEEEEEE
T ss_pred             CCCCcceEEEEE
Confidence               357888887

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=86.89  E-value=4.6  Score=36.96  Aligned_cols=114  Identities=11%  Similarity=0.014  Sum_probs=69.0

Q ss_pred             CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcc-cccEEEecCCCCcccccCCcccccccCCcceEEEcCCCC-EEEEEC
Q 014345           22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLY-SRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIADT   99 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~-g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~-LYVADt   99 (426)
                      ...+++++++|.++++-...+.|..++.+.... ..+....+.                -.....+++.++|+ ++++-.
T Consensus        13 ~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~----------------~~~v~~~~~~~~~~~~l~~~~   76 (342)
T 1yfq_A           13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRY----------------KHPLLCCNFIDNTDLQIYVGT   76 (342)
T ss_dssp             CEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEEC----------------SSCEEEEEEEESSSEEEEEEE
T ss_pred             cEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeec----------------CCceEEEEECCCCCcEEEEEc
Confidence            467899999998777766788888887763210 012222221                11256799999998 666655


Q ss_pred             CCCEEEEEcC-CC--cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCC
Q 014345          100 MNMAIRKISD-SG--VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHF  168 (426)
Q Consensus       100 ~N~rIrk~d~-g~--VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~  168 (426)
                      .++.|+.++- ..  ..++.+..      +         -.....|++. + +.++++-..++.|+.+++..
T Consensus        77 ~dg~i~~wd~~~~~~~~~~~~~~------~---------~~~v~~l~~~-~-~~~l~s~~~d~~i~iwd~~~  131 (342)
T 1yfq_A           77 VQGEILKVDLIGSPSFQALTNNE------A---------NLGICRICKY-G-DDKLIAASWDGLIEVIDPRN  131 (342)
T ss_dssp             TTSCEEEECSSSSSSEEECBSCC------C---------CSCEEEEEEE-T-TTEEEEEETTSEEEEECHHH
T ss_pred             CCCeEEEEEeccCCceEeccccC------C---------CCceEEEEeC-C-CCEEEEEcCCCeEEEEcccc
Confidence            6788888874 33  33332200      0         0123566754 4 55666666678899888754

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=86.67  E-value=9.8  Score=40.41  Aligned_cols=116  Identities=14%  Similarity=0.129  Sum_probs=71.9

Q ss_pred             CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCC
Q 014345           22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN  101 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N  101 (426)
                      ....|+.|.+|+|||+...++-|.++++..   +++..+...  +..+          -+.+..|+.|.+|+|||+-.  
T Consensus       473 ~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~---~~~~~~~~~--~~~~----------~~~~~~i~~d~~g~lWigt~--  535 (758)
T 3ott_A          473 FINQIIPDNEGNVWVLLYNNKGIDKINPRT---REVTKLFAD--ELTG----------EKSPNYLLCDEDGLLWVGFH--  535 (758)
T ss_dssp             CEEEEEECTTSCEEEEETTCSSEEEEETTT---TEEEEECTT--TSCG----------GGCEEEEEECTTSCEEEEET--
T ss_pred             eeeeEEEcCCCCEEEEccCCCCcEEEeCCC---CceEEecCC--CcCC----------CcccceEEECCCCCEEEEec--
Confidence            367899999999999443346799999874   334433211  1000          13467899999999999963  


Q ss_pred             CEEEEEcC--CCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceE
Q 014345          102 MAIRKISD--SGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCA  172 (426)
Q Consensus       102 ~rIrk~d~--g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~~  172 (426)
                      +-|.+++.  +.+..+.-          +|...    ....+|+ . ++|+|||+-  ++-|.++++......
T Consensus       536 ~Gl~~~~~~~~~~~~~~~----------~gl~~----~~i~~i~-~-~~g~lWi~t--~~Gl~~~~~~~~~~~  590 (758)
T 3ott_A          536 GGVMRINPKDESQQSISF----------GSFSN----NEILSMT-C-VKNSIWVST--TNGLWIIDRKTMDAR  590 (758)
T ss_dssp             TEEEEECC--CCCCBCCC----------CC-------CCEEEEE-E-ETTEEEEEE--SSCEEEEETTTCCEE
T ss_pred             CceEEEecCCCceEEecc----------cCCCc----cceEEEE-E-CCCCEEEEC--CCCeEEEcCCCceeE
Confidence            46888882  33332210          11111    2345565 3 489999987  456889998865544

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=86.39  E-value=6.5  Score=35.96  Aligned_cols=109  Identities=10%  Similarity=0.025  Sum_probs=65.4

Q ss_pred             EcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcC---CCCEEEEECCCCEE
Q 014345           28 VLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD---RGNIYIADTMNMAI  104 (426)
Q Consensus        28 Vd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~---dG~LYVADt~N~rI  104 (426)
                      ++++++++++-..++.|..++....   ......+.                -.....+++++   +++++++-..++.|
T Consensus       176 ~~~~~~~l~~~~~d~~i~i~d~~~~---~~~~~~~~----------------~~~v~~~~~~~~~~~~~~l~~~~~dg~i  236 (357)
T 3i2n_A          176 YNQEERVVCAGYDNGDIKLFDLRNM---ALRWETNI----------------KNGVCSLEFDRKDISMNKLVATSLEGKF  236 (357)
T ss_dssp             CC-CCCEEEEEETTSEEEEEETTTT---EEEEEEEC----------------SSCEEEEEESCSSSSCCEEEEEESTTEE
T ss_pred             cCCCCCEEEEEccCCeEEEEECccC---ceeeecCC----------------CCceEEEEcCCCCCCCCEEEEECCCCeE
Confidence            5678888887778889999998742   22222211                11256789998   78877776778889


Q ss_pred             EEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCe-EEEEECCCCeEEEEEcCC
Q 014345          105 RKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCS-LLVIDRGNRAIREIQLHF  168 (426)
Q Consensus       105 rk~d--~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~-LYVaDsgN~rIr~I~l~~  168 (426)
                      +.++  .+. +..+.-....   +         .-.....+++ .+++. ++++-..++.|+.+++..
T Consensus       237 ~i~d~~~~~~~~~~~~~~~~---~---------~~~~v~~~~~-~~~~~~~l~~~~~dg~i~iwd~~~  291 (357)
T 3i2n_A          237 HVFDMRTQHPTKGFASVSEK---A---------HKSTVWQVRH-LPQNRELFLTAGGAGGLHLWKYEY  291 (357)
T ss_dssp             EEEEEEEEETTTEEEEEEEE---C---------CSSCEEEEEE-ETTEEEEEEEEETTSEEEEEEEEC
T ss_pred             EEEeCcCCCcccceeeeccC---C---------CcCCEEEEEE-CCCCCcEEEEEeCCCcEEEeecCC
Confidence            9888  222 2222100000   0         0112456664 55665 677777778888888764

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=86.31  E-value=20  Score=36.66  Aligned_cols=84  Identities=15%  Similarity=0.179  Sum_probs=48.4

Q ss_pred             CceEEEEcCCCcEEEEECCCC--eEEEEeCCCCcccccEEEecCCCCcccccCCcccccccC-CcceEEEcCCCCEEEEE
Q 014345           22 EPYSVEVLPGGELLILDSANS--NLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMN-HPKGLTVDDRGNIYIAD   98 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n~--rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln-~P~GIaVd~dG~LYVAD   98 (426)
                      ....+++++||.||++...++  +|++++.++   +....+.... ...+   .    ..+. ....+++.++|.++++-
T Consensus       243 ~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~---~~~~~l~~~~-~~~~---~----p~w~~~~~~~~~~~~~~~~~~~  311 (662)
T 3azo_A          243 AIAQAEWAPDGSLIVATDRTGWWNLHRVDPAT---GAATQLCRRE-EEFA---G----PLWTPGMRWFAPLANGLIAVVH  311 (662)
T ss_dssp             CEEEEEECTTSCEEEEECTTSSCEEEEECTTT---CCEEESSCCS-SBSS---C----CCCSTTCCSEEECTTSCEEEEE
T ss_pred             eEcceEECCCCeEEEEECCCCCeEEEEEECCC---Cceeeccccc-cccc---C----ccccccCceEeEeCCCEEEEEE
Confidence            567889999999877665555  899998754   3334333211 0000   0    0011 13468888888877664


Q ss_pred             C-CCCEEEEEc-CCC-cEEEe
Q 014345           99 T-MNMAIRKIS-DSG-VTTIA  116 (426)
Q Consensus        99 t-~N~rIrk~d-~g~-VstIa  116 (426)
                      . +..+|+.++ +++ +.++.
T Consensus       312 ~~~~~~l~~~d~~~~~~~~l~  332 (662)
T 3azo_A          312 GKGAAVLGILDPESGELVDAA  332 (662)
T ss_dssp             BSSSCEEEEEETTTTEEEECC
T ss_pred             EcCccEEEEEECCCCcEEEec
Confidence            4 445677777 433 54443

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=86.30  E-value=1.9  Score=40.59  Aligned_cols=132  Identities=10%  Similarity=-0.059  Sum_probs=68.3

Q ss_pred             CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcc-cccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECC
Q 014345           22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLY-SRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTM  100 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~-g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~  100 (426)
                      ...++++.++|+++++-...+.|..++.+.... .....+.+.      +         -.....|++.++|+++++-..
T Consensus       102 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~------h---------~~~v~~~~~~~~~~~l~~~~~  166 (377)
T 3dwl_C          102 AATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRP------L---------RSTILSLDWHPNNVLLAAGCA  166 (377)
T ss_dssp             CEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSS------C---------CSCEEEEEECTTSSEEEEEES
T ss_pred             ceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecc------c---------CCCeEEEEEcCCCCEEEEEeC
Confidence            456777778777666555667777777653210 012222220      0         123568999999987777766


Q ss_pred             CCEEEEEc-C-CCcEEEe-CCccCCCCCCCCCCcc--cccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCce
Q 014345          101 NMAIRKIS-D-SGVTTIA-GGKWGRGGGHVDGPSE--DAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDC  171 (426)
Q Consensus       101 N~rIrk~d-~-g~VstIa-Gg~~g~~~G~~dG~~~--~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~  171 (426)
                      ++.|+.++ . ..+.... ....+..  ...+...  -..-.....++ +.+++.++++-..++.|+.+++....+
T Consensus       167 d~~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~-~sp~~~~l~~~~~d~~i~iwd~~~~~~  239 (377)
T 3dwl_C          167 DRKAYVLSAYVRDVDAKPEASVWGSR--LPFNTVCAEYPSGGWVHAVG-FSPSGNALAYAGHDSSVTIAYPSAPEQ  239 (377)
T ss_dssp             SSCEEEEEECCSSCC-CCCSCSSCSC--CCEEEEEECCCCSSSEEEEE-ECTTSSCEEEEETTTEEC-CEECSTTS
T ss_pred             CCEEEEEEEEecccCCCccccccccc--cchhhhhhcccCCceEEEEE-ECCCCCEEEEEeCCCcEEEEECCCCCC
Confidence            77888887 2 2211100 0000000  0000000  00112345677 577787777666788999999876554

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=86.07  E-value=14  Score=34.56  Aligned_cols=112  Identities=11%  Similarity=0.101  Sum_probs=66.6

Q ss_pred             CceEEEEcCCCcEEEEECCCCeEEEEeCC-CCcccc-cEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEEC
Q 014345           22 EPYSVEVLPGGELLILDSANSNLYRISSS-LSLYSR-PKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADT   99 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~d-g~~~g~-v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt   99 (426)
                      .-.+|+++++|+++++-...+.|+.++.. ...... +..+.+.                -..-..|++.+++.++++-.
T Consensus       109 ~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h----------------~~~v~~v~~~p~~~~l~s~s  172 (330)
T 2hes_X          109 EVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEH----------------SQDVKHVIWHPSEALLASSS  172 (330)
T ss_dssp             CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCC----------------SSCEEEEEECSSSSEEEEEE
T ss_pred             cEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccC----------------CCceEEEEECCCCCEEEEEc
Confidence            35688899999888877778888888873 211011 1122111                11246789999999888877


Q ss_pred             CCCEEEEEc--CCC---cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCC--CeEEEEECCCCeEEEEEcC
Q 014345          100 MNMAIRKIS--DSG---VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSS--CSLLVIDRGNRAIREIQLH  167 (426)
Q Consensus       100 ~N~rIrk~d--~g~---VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~--G~LYVaDsgN~rIr~I~l~  167 (426)
                      .++.|+.++  .+.   +.++.+-.                 ..-+.+++ .++  +.++++-...+.|+.+++.
T Consensus       173 ~D~~i~iW~~~~~~~~~~~~~~~h~-----------------~~v~~~~~-~~~~~~~~l~s~s~D~~v~iw~~~  229 (330)
T 2hes_X          173 YDDTVRIWKDYDDDWECVAVLNGHE-----------------GTVWSSDF-DKTEGVFRLCSGSDDSTVRVWKYM  229 (330)
T ss_dssp             TTSCEEEEEEETTEEEEEEEECCCS-----------------SCEEEEEE-CCSSSSCEEEEEETTSCEEEEEEE
T ss_pred             CCCeEEEEECCCCCeeEEEEccCCC-----------------CcEEEEEe-cCCCCeeEEEEEeCCCeEEEEEec
Confidence            788888887  332   23332210                 11244553 444  4555555566777777654

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=85.96  E-value=13  Score=38.12  Aligned_cols=79  Identities=10%  Similarity=0.166  Sum_probs=46.4

Q ss_pred             ceEEEEcCCCc-EEEEECC-------CCeEEEEeCCC-CcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCC
Q 014345           23 PYSVEVLPGGE-LLILDSA-------NSNLYRISSSL-SLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN   93 (426)
Q Consensus        23 P~GIaVd~dG~-LYVaD~~-------n~rI~kid~dg-~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~   93 (426)
                      ..++++++||. |+++...       ...|+.++.++ +..+....+....               -.....+++.+||+
T Consensus       190 ~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~---------------~~~~~~~~~spdg~  254 (662)
T 3azo_A          190 VTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGP---------------EEAIAQAEWAPDGS  254 (662)
T ss_dssp             ECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEET---------------TBCEEEEEECTTSC
T ss_pred             ccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCC---------------CceEcceEECCCCe
Confidence            45678999997 5444422       24788888762 2111334443210               01246788999998


Q ss_pred             EEEEECCCC--EEEEEc--CCCcEEEe
Q 014345           94 IYIADTMNM--AIRKIS--DSGVTTIA  116 (426)
Q Consensus        94 LYVADt~N~--rIrk~d--~g~VstIa  116 (426)
                      ||++...++  +|..++  .+....+.
T Consensus       255 l~~~~~~~~~~~l~~~~~~~~~~~~l~  281 (662)
T 3azo_A          255 LIVATDRTGWWNLHRVDPATGAATQLC  281 (662)
T ss_dssp             EEEEECTTSSCEEEEECTTTCCEEESS
T ss_pred             EEEEECCCCCeEEEEEECCCCceeecc
Confidence            777665444  888888  33344443

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=85.86  E-value=3.3  Score=39.84  Aligned_cols=69  Identities=17%  Similarity=0.130  Sum_probs=51.5

Q ss_pred             CceEEEEcCCCcEEEEECCCCeEEEEeCCCCccccc-EEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECC
Q 014345           22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRP-KLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTM  100 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v-~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~  100 (426)
                      .-.+|+++|||.++++-...+.|..++...   ++. ..+.      .|+         -..-++|++.+||+++++=..
T Consensus       271 ~V~~~~~Spdg~~lasgs~D~~V~iwd~~~---~~~~~~~~------~gH---------~~~V~~v~fSpdg~~laS~S~  332 (365)
T 4h5i_A          271 GITSMDVDMKGELAVLASNDNSIALVKLKD---LSMSKIFK------QAH---------SFAITEVTISPDSTYVASVSA  332 (365)
T ss_dssp             CEEEEEECTTSCEEEEEETTSCEEEEETTT---TEEEEEET------TSS---------SSCEEEEEECTTSCEEEEEET
T ss_pred             CeEeEEECCCCCceEEEcCCCEEEEEECCC---CcEEEEec------Ccc---------cCCEEEEEECCCCCEEEEEeC
Confidence            357899999999888877888999999864   222 2221      111         112578999999999999888


Q ss_pred             CCEEEEEc
Q 014345          101 NMAIRKIS  108 (426)
Q Consensus       101 N~rIrk~d  108 (426)
                      .+.||+++
T Consensus       333 D~tvrvw~  340 (365)
T 4h5i_A          333 ANTIHIIK  340 (365)
T ss_dssp             TSEEEEEE
T ss_pred             CCeEEEEE
Confidence            89999988

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=85.10  E-value=22  Score=32.26  Aligned_cols=125  Identities=7%  Similarity=0.007  Sum_probs=73.8

Q ss_pred             CCceEEEEcCCCcEEEEECCCCeEEEEeCCC-CcccccEEEecCCCCcccccCCcccccccCCcceEEEcC-CCCEEEEE
Q 014345           21 IEPYSVEVLPGGELLILDSANSNLYRISSSL-SLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD-RGNIYIAD   98 (426)
Q Consensus        21 ~~P~GIaVd~dG~LYVaD~~n~rI~kid~dg-~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~-dG~LYVAD   98 (426)
                      ..+.++++++++ |+++. ..+.|..++... .. .........   .            -.....|++.+ +|+++++-
T Consensus       151 ~~v~~~~~~~~~-l~~~~-~d~~i~i~d~~~~~~-~~~~~~~~~---~------------~~~i~~i~~~~~~~~~l~~~  212 (342)
T 1yfq_A          151 NKIFTMDTNSSR-LIVGM-NNSQVQWFRLPLCED-DNGTIEESG---L------------KYQIRDVALLPKEQEGYACS  212 (342)
T ss_dssp             CCEEEEEECSSE-EEEEE-STTEEEEEESSCCTT-CCCEEEECS---C------------SSCEEEEEECSGGGCEEEEE
T ss_pred             CceEEEEecCCc-EEEEe-CCCeEEEEECCcccc-ccceeeecC---C------------CCceeEEEECCCCCCEEEEE
Confidence            357889998877 55554 577898888764 21 111111111   0            11357899999 88888777


Q ss_pred             CCCCEEEEEc--CC------C-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCC
Q 014345           99 TMNMAIRKIS--DS------G-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFD  169 (426)
Q Consensus        99 t~N~rIrk~d--~g------~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~  169 (426)
                      ..++.|+.++  ..      . +.++.+.....     .+   .........++ +.+++.++++-..++.|+.+++...
T Consensus       213 ~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~-----~~---~~~~~~i~~~~-~s~~~~~l~~~~~dg~i~vwd~~~~  283 (342)
T 1yfq_A          213 SIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNL-----KD---TNLAYPVNSIE-FSPRHKFLYTAGSDGIISCWNLQTR  283 (342)
T ss_dssp             ETTSEEEEEECCTTCCSTTCTTCEEEECCCCCT-----TC---CSSCCCEEEEE-ECTTTCCEEEEETTSCEEEEETTTT
T ss_pred             ecCCcEEEEEEcCCCcccccccceeeecccccc-----cc---cccceeEEEEE-EcCCCCEEEEecCCceEEEEcCccH
Confidence            7788888866  33      3 34443321100     00   01112345666 4667776666667889999998765


Q ss_pred             ceE
Q 014345          170 DCA  172 (426)
Q Consensus       170 ~~~  172 (426)
                      .+.
T Consensus       284 ~~~  286 (342)
T 1yfq_A          284 KKI  286 (342)
T ss_dssp             EEE
T ss_pred             hHh
Confidence            544

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=85.07  E-value=20  Score=31.84  Aligned_cols=110  Identities=12%  Similarity=0.107  Sum_probs=59.1

Q ss_pred             CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccc-cEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECC
Q 014345           22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSR-PKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTM  100 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~-v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~  100 (426)
                      ....++++++|.++++-..++.|..++......+. +..+.+.                -..-..|++  +++++++-..
T Consensus        61 ~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~----------------~~~i~~~~~--~~~~l~~~~~  122 (313)
T 3odt_A           61 FLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGH----------------QGNVCSLSF--QDGVVISGSW  122 (313)
T ss_dssp             CEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCC----------------SSCEEEEEE--ETTEEEEEET
T ss_pred             cEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhc----------------ccCEEEEEe--cCCEEEEEeC
Confidence            46778888888877766677777777654221111 1111111                112345666  3556666566


Q ss_pred             CCEEEEEcCCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEc
Q 014345          101 NMAIRKISDSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQL  166 (426)
Q Consensus       101 N~rIrk~d~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l  166 (426)
                      ++.|+.++.+. +..+.+..                 .....+++...++.++++-..++.|+.++.
T Consensus       123 d~~i~~~d~~~~~~~~~~~~-----------------~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~  172 (313)
T 3odt_A          123 DKTAKVWKEGSLVYNLQAHN-----------------ASVWDAKVVSFSENKFLTASADKTIKLWQN  172 (313)
T ss_dssp             TSEEEEEETTEEEEEEECCS-----------------SCEEEEEEEETTTTEEEEEETTSCEEEEET
T ss_pred             CCCEEEEcCCcEEEecccCC-----------------CceeEEEEccCCCCEEEEEECCCCEEEEec
Confidence            78888888444 33333210                 112344544435555555555677777763

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=85.05  E-value=16  Score=34.59  Aligned_cols=70  Identities=13%  Similarity=0.124  Sum_probs=49.6

Q ss_pred             cceEEEcCCCCEEEEECCCCE-EEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCC
Q 014345           83 PKGLTVDDRGNIYIADTMNMA-IRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGN  158 (426)
Q Consensus        83 P~GIaVd~dG~LYVADt~N~r-Irk~d--~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN  158 (426)
                      ...|+++++|.++++-..++. |+.+|  .+. +.++..+..               -..-..|+ +.+++.++++-...
T Consensus       198 v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h---------------~~~v~~~~-~s~~~~~l~s~s~d  261 (355)
T 3vu4_A          198 IKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLD---------------RADVVDMK-WSTDGSKLAVVSDK  261 (355)
T ss_dssp             EEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTC---------------CSCEEEEE-ECTTSCEEEEEETT
T ss_pred             eEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC---------------CCcEEEEE-ECCCCCEEEEEECC
Confidence            468999999998888777786 99998  344 445541100               01235677 57788888888788


Q ss_pred             CeEEEEEcCC
Q 014345          159 RAIREIQLHF  168 (426)
Q Consensus       159 ~rIr~I~l~~  168 (426)
                      +.|+.+++..
T Consensus       262 ~~v~iw~~~~  271 (355)
T 3vu4_A          262 WTLHVFEIFN  271 (355)
T ss_dssp             CEEEEEESSC
T ss_pred             CEEEEEEccC
Confidence            9999999864

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=84.96  E-value=12  Score=34.87  Aligned_cols=113  Identities=17%  Similarity=0.077  Sum_probs=68.3

Q ss_pred             CceEEEEcCCCcEEEEECCCCeEEEEeCCCCc----ccc-cEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEE
Q 014345           22 EPYSVEVLPGGELLILDSANSNLYRISSSLSL----YSR-PKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYI   96 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~----~g~-v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYV   96 (426)
                      .-.+|++.++|+++++-...+.|..++.....    ... +..+.|.                -..-..|+++++|++++
T Consensus        60 ~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h----------------~~~V~~v~~sp~g~~la  123 (330)
T 2hes_X           60 AIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGH----------------ENEVKGVAWSNDGYYLA  123 (330)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC--------------------CEEEEEECTTSCEEE
T ss_pred             CEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCC----------------CCcEEEEEECCCCCEEE
Confidence            35789999999988887778888888764210    001 1111111                11246799999999888


Q ss_pred             EECCCCEEEEEcC--C-C-c---EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCC
Q 014345           97 ADTMNMAIRKISD--S-G-V---TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHF  168 (426)
Q Consensus        97 ADt~N~rIrk~d~--g-~-V---stIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~  168 (426)
                      +=..++.|+.++-  . . .   .++.+-                 -.....|+ ..+++.++++-...+.|+.++...
T Consensus       124 s~s~D~~v~iwd~~~~~~~~~~~~~~~~h-----------------~~~v~~v~-~~p~~~~l~s~s~D~~i~iW~~~~  184 (330)
T 2hes_X          124 TCSRDKSVWIWETDESGEEYECISVLQEH-----------------SQDVKHVI-WHPSEALLASSSYDDTVRIWKDYD  184 (330)
T ss_dssp             EEETTSCEEEEECCTTCCCCEEEEEECCC-----------------SSCEEEEE-ECSSSSEEEEEETTSCEEEEEEET
T ss_pred             EEeCCCEEEEEeccCCCCCeEEEEEeccC-----------------CCceEEEE-ECCCCCEEEEEcCCCeEEEEECCC
Confidence            7777788888872  2 1 1   222221                 01234566 466777777777778888887654

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=84.71  E-value=29  Score=33.39  Aligned_cols=114  Identities=11%  Similarity=-0.031  Sum_probs=66.5

Q ss_pred             CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCC
Q 014345           22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN  101 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N  101 (426)
                      ....++++++|+.+++-...+.|..++.....  .+..+.+.                -.....++++  +..+++-..+
T Consensus       312 ~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~--~~~~~~~h----------------~~~v~~~~~~--~~~l~s~s~d  371 (464)
T 3v7d_B          312 RIYSTIYDHERKRCISASMDTTIRIWDLENGE--LMYTLQGH----------------TALVGLLRLS--DKFLVSAAAD  371 (464)
T ss_dssp             CEEEEEEETTTTEEEEEETTSCEEEEETTTTE--EEEEECCC----------------SSCEEEEEEC--SSEEEEEETT
T ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc--EEEEEeCC----------------CCcEEEEEEc--CCEEEEEeCC
Confidence            46788999998887777778889999876321  12222221                0113456665  5666666667


Q ss_pred             CEEEEEc-CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceEe
Q 014345          102 MAIRKIS-DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAY  173 (426)
Q Consensus       102 ~rIrk~d-~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~~~  173 (426)
                      +.|+.++ ........... .               .....++ +.+++.++++-. .+.|+.++.....+..
T Consensus       372 g~v~vwd~~~~~~~~~~~~-~---------------~~~~~~~-~~~~~~~l~~~~-dg~i~iwd~~~g~~~~  426 (464)
T 3v7d_B          372 GSIRGWDANDYSRKFSYHH-T---------------NLSAITT-FYVSDNILVSGS-ENQFNIYNLRSGKLVH  426 (464)
T ss_dssp             SEEEEEETTTCCEEEEEEC-T---------------TCCCEEE-EEECSSEEEEEE-TTEEEEEETTTCCEEE
T ss_pred             CcEEEEECCCCceeeeecC-C---------------CCccEEE-EEeCCCEEEEec-CCeEEEEECCCCcEEe
Confidence            8899988 33222221110 0               0112334 455666666655 6789888887665543

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=84.44  E-value=24  Score=32.24  Aligned_cols=118  Identities=12%  Similarity=0.082  Sum_probs=70.0

Q ss_pred             CceEEEEcCC--CcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcC---------
Q 014345           22 EPYSVEVLPG--GELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD---------   90 (426)
Q Consensus        22 ~P~GIaVd~d--G~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~---------   90 (426)
                      ...++++.++  |.++++-...+.|..++...........+.+.                -.....+++.+         
T Consensus       103 ~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~----------------~~~v~~~~~~~~~~~~~~~~  166 (379)
T 3jrp_A          103 SVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAH----------------AIGVNSASWAPATIEEDGEH  166 (379)
T ss_dssp             CEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECC----------------TTCEEEEEECCCC-------
T ss_pred             ceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCC----------------CCceEEEEEcCccccccccc
Confidence            5778889887  88777777788888888764311111122111                11235677776         


Q ss_pred             ----CCCEEEEECCCCEEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCC---CeEEEEECCCCe
Q 014345           91 ----RGNIYIADTMNMAIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSS---CSLLVIDRGNRA  160 (426)
Q Consensus        91 ----dG~LYVADt~N~rIrk~d--~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~---G~LYVaDsgN~r  160 (426)
                          ++.++++-..++.|+.++  .+. ...+.....+             .-.....++ +.++   +.++++-...+.
T Consensus       167 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-------------h~~~v~~~~-~sp~~~~~~~l~s~~~dg~  232 (379)
T 3jrp_A          167 NGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG-------------HSDWVRDVA-WSPTVLLRSYLASVSQDRT  232 (379)
T ss_dssp             ---CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECC-------------CSSCEEEEE-ECCCCSSSEEEEEEETTSC
T ss_pred             cCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEec-------------ccCcEeEEE-ECCCCCCCCeEEEEeCCCE
Confidence                578777777778888887  333 1111110000             011245666 4666   777777777788


Q ss_pred             EEEEEcCCC
Q 014345          161 IREIQLHFD  169 (426)
Q Consensus       161 Ir~I~l~~~  169 (426)
                      |+.+++...
T Consensus       233 i~iwd~~~~  241 (379)
T 3jrp_A          233 CIIWTQDNE  241 (379)
T ss_dssp             EEEEEESST
T ss_pred             EEEEeCCCC
Confidence            988887764

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=84.10  E-value=26  Score=36.37  Aligned_cols=82  Identities=13%  Similarity=0.157  Sum_probs=44.2

Q ss_pred             CceEEEEcCCCc-EEEEECCCC-----eEEEEeCCCCcccccEEEecCCCCcc-c---ccCCccccc--cc---CCcceE
Q 014345           22 EPYSVEVLPGGE-LLILDSANS-----NLYRISSSLSLYSRPKLVAGSAEGYS-G---HVDGKPREA--RM---NHPKGL   86 (426)
Q Consensus        22 ~P~GIaVd~dG~-LYVaD~~n~-----rI~kid~dg~~~g~v~~vaG~~~G~~-G---~~dG~a~~A--~L---n~P~GI   86 (426)
                      .+..+++++||. |+++....+     .|+.++.++   ++...+........ |   ...+.....  ++   .....+
T Consensus        38 ~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  114 (741)
T 2ecf_A           38 TLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGS---GQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY  114 (741)
T ss_dssp             CCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTT---CCEEEEECGGGTC--------------------CCEESCCC
T ss_pred             CCCCceEecCCCEEEEEeccCCCCcccEEEEEECCC---CceeEccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence            588999999998 555554244     899999875   33333332100000 0   000000000  00   114678


Q ss_pred             EEcCCCC-EEEEECCCCEEEEEc
Q 014345           87 TVDDRGN-IYIADTMNMAIRKIS  108 (426)
Q Consensus        87 aVd~dG~-LYVADt~N~rIrk~d  108 (426)
                      ++++||+ |+++..  +.|+.++
T Consensus       115 ~~SpDg~~l~~~~~--~~i~~~d  135 (741)
T 2ecf_A          115 QWSPDAQRLLFPLG--GELYLYD  135 (741)
T ss_dssp             EECTTSSEEEEEET--TEEEEEE
T ss_pred             EECCCCCEEEEEeC--CcEEEEE
Confidence            9999997 555554  7888888

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=84.02  E-value=20  Score=37.03  Aligned_cols=65  Identities=8%  Similarity=0.062  Sum_probs=40.8

Q ss_pred             CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCC
Q 014345           22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN  101 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N  101 (426)
                      .+..+++++|+.|+++.  ++.|+.++..+   ++...+....        +        ....+++++||+.++. ..+
T Consensus        83 ~v~~~~~spd~~~~~~~--~~~i~~~d~~~---~~~~~l~~~~--------~--------~~~~~~~SpdG~~la~-~~~  140 (706)
T 2z3z_A           83 PSFRTLDAGRGLVVLFT--QGGLVGFDMLA---RKVTYLFDTN--------E--------ETASLDFSPVGDRVAY-VRN  140 (706)
T ss_dssp             CCEEEEETTTTEEEEEE--TTEEEEEETTT---TEEEEEECCT--------T--------CCTTCEECTTSSEEEE-EET
T ss_pred             CceeEEECCCCeEEEEE--CCEEEEEECCC---CceEEccCCc--------c--------cccCCcCCCCCCEEEE-EEC
Confidence            57899999996666653  48999999875   3343333221        0        1355788888863332 134


Q ss_pred             CEEEEEc
Q 014345          102 MAIRKIS  108 (426)
Q Consensus       102 ~rIrk~d  108 (426)
                      +.|+.++
T Consensus       141 ~~i~v~~  147 (706)
T 2z3z_A          141 HNLYIAR  147 (706)
T ss_dssp             TEEEEEE
T ss_pred             CeEEEEe
Confidence            6777777

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=83.62  E-value=9.6  Score=35.41  Aligned_cols=112  Identities=13%  Similarity=0.006  Sum_probs=67.0

Q ss_pred             ceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcC--CCCEEEEECC
Q 014345           23 PYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD--RGNIYIADTM  100 (426)
Q Consensus        23 P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~--dG~LYVADt~  100 (426)
                      -..|+++++|+++++-...+.|..++........+..+.|.        .+        .-..|++.+  +|+++++=..
T Consensus        16 V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH--------~~--------~V~~v~~~~~~~~~~l~s~s~   79 (316)
T 3bg1_A           16 IHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGH--------EG--------PVWQVAWAHPMYGNILASCSY   79 (316)
T ss_dssp             EEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECC--------SS--------CEEEEEECCGGGSSCEEEEET
T ss_pred             EEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCC--------Cc--------cEEEEEeCCCCCCCEEEEEEC
Confidence            57899999999888888888898888753210011222222        11        135677754  3676666666


Q ss_pred             CCEEEEEc--CCCc---EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCC--CeEEEEECCCCeEEEEEcCC
Q 014345          101 NMAIRKIS--DSGV---TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSS--CSLLVIDRGNRAIREIQLHF  168 (426)
Q Consensus       101 N~rIrk~d--~g~V---stIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~--G~LYVaDsgN~rIr~I~l~~  168 (426)
                      ++.|+.++  .+..   .++.+-                 -.....|++ .++  +.++++-...+.|+.++...
T Consensus        80 D~~v~iWd~~~~~~~~~~~~~~h-----------------~~~V~~v~~-~p~~~g~~lasgs~D~~i~lwd~~~  136 (316)
T 3bg1_A           80 DRKVIIWREENGTWEKSHEHAGH-----------------DSSVNSVCW-APHDYGLILACGSSDGAISLLTYTG  136 (316)
T ss_dssp             TSCEEEECCSSSCCCEEEEECCC-----------------SSCCCEEEE-CCTTTCSCEEEECSSSCEEEEEECS
T ss_pred             CCEEEEEECCCCcceEEEEccCC-----------------CCceEEEEE-CCCCCCcEEEEEcCCCCEEEEecCC
Confidence            78888888  3322   222221                 012356664 443  66777777778888887654

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=83.59  E-value=22  Score=30.99  Aligned_cols=72  Identities=13%  Similarity=0.075  Sum_probs=41.0

Q ss_pred             cceEEEcCCCCEEEEECCCCEEEEEc-CC--CcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCe-EEEEEC--
Q 014345           83 PKGLTVDDRGNIYIADTMNMAIRKIS-DS--GVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCS-LLVIDR--  156 (426)
Q Consensus        83 P~GIaVd~dG~LYVADt~N~rIrk~d-~g--~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~-LYVaDs--  156 (426)
                      ...++++++|+.+++.. +..|+.++ .+  ....+.....               -....+++ +.+++. |+++..  
T Consensus        44 v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~---------------~~~~~~~~-~spdg~~l~~~~~~~  106 (297)
T 2ojh_A           44 FEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFA---------------TICNNDHG-ISPDGALYAISDKVE  106 (297)
T ss_dssp             CEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTC---------------CCBCSCCE-ECTTSSEEEEEECTT
T ss_pred             eEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccc---------------cccccceE-ECCCCCEEEEEEeCC
Confidence            56799999998665544 67899888 33  3443332110               01234566 455554 444442  


Q ss_pred             -CCCeEEEEEcCCCce
Q 014345          157 -GNRAIREIQLHFDDC  171 (426)
Q Consensus       157 -gN~rIr~I~l~~~~~  171 (426)
                       +..+|+.+++.+...
T Consensus       107 ~~~~~l~~~~~~~~~~  122 (297)
T 2ojh_A          107 FGKSAIYLLPSTGGTP  122 (297)
T ss_dssp             TSSCEEEEEETTCCCC
T ss_pred             CCcceEEEEECCCCce
Confidence             357788887765443

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=83.55  E-value=5.7  Score=42.40  Aligned_cols=116  Identities=10%  Similarity=0.005  Sum_probs=64.7

Q ss_pred             CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCC--CCEEEEEC
Q 014345           22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDR--GNIYIADT   99 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~d--G~LYVADt   99 (426)
                      .-++++++++|+++++-..++.|..++..+.....+..+.+.        .        ..-..|++.++  |+++++-.
T Consensus        11 ~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h--------~--------~~V~~l~~s~~~~~~~l~s~s   74 (753)
T 3jro_A           11 LIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGH--------E--------GPVWRVDWAHPKFGTILASCS   74 (753)
T ss_dssp             CEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCC--------S--------SCEEEEEECCTTSCSEEEEEE
T ss_pred             eeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCC--------c--------CceEEEEecCCCCCCEEEEEe
Confidence            467888999998777776788888887753210111222121        1        12357788766  77777766


Q ss_pred             CCCEEEEEc--CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCC--CeEEEEECCCCeEEEEEcCC
Q 014345          100 MNMAIRKIS--DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSS--CSLLVIDRGNRAIREIQLHF  168 (426)
Q Consensus       100 ~N~rIrk~d--~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~--G~LYVaDsgN~rIr~I~l~~  168 (426)
                      .++.|+.++  .+....+....     ++         -.....++ +.++  +.++++-..++.|+.+++..
T Consensus        75 ~Dg~I~vwd~~~~~~~~~~~~~-----~h---------~~~V~~v~-~sp~~~~~~l~sgs~dg~I~vwdl~~  132 (753)
T 3jro_A           75 YDGKVLIWKEENGRWSQIAVHA-----VH---------SASVNSVQ-WAPHEYGPLLLVASSDGKVSVVEFKE  132 (753)
T ss_dssp             TTSCEEEEEEETTEEEEEEEEC-----CC---------SSCEEEEE-ECCGGGCSEEEEEETTSEEEEEECCS
T ss_pred             CCCeEEEEECCCCccccccccc-----CC---------CCCeEEEE-ECCCCCCCEEEEEeCCCcEEEEEeec
Confidence            678888887  43322221100     00         01234455 3444  55555555566777777654

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=83.03  E-value=5  Score=44.27  Aligned_cols=74  Identities=5%  Similarity=-0.095  Sum_probs=46.8

Q ss_pred             EEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEe---cCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCC
Q 014345           25 SVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVA---GSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN  101 (426)
Q Consensus        25 GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~va---G~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N  101 (426)
                      .|++.++|+++++-...+.|..++..+........+.   ....+ .|+         -.....|+++++|.+.++-..+
T Consensus       440 sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~-~~h---------~~~V~svafspdg~~LAsgs~D  509 (902)
T 2oaj_A          440 QKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLN-KAK---------ELAVDKISFAAETLELAVSIET  509 (902)
T ss_dssp             CCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTT-CSS---------SCCEEEEEEETTTTEEEEEETT
T ss_pred             cccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcC-CCC---------CCceeEEEecCCCCeEEEEecC
Confidence            4566788999999888999999998753211100000   00000 011         1236789999999988777777


Q ss_pred             CEEEEEc
Q 014345          102 MAIRKIS  108 (426)
Q Consensus       102 ~rIrk~d  108 (426)
                      +.|+.++
T Consensus       510 gtV~lwd  516 (902)
T 2oaj_A          510 GDVVLFK  516 (902)
T ss_dssp             SCEEEEE
T ss_pred             cEEEEEE
Confidence            8888777

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=82.47  E-value=35  Score=32.55  Aligned_cols=115  Identities=12%  Similarity=0.073  Sum_probs=67.3

Q ss_pred             ceEEE--EcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECC
Q 014345           23 PYSVE--VLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTM  100 (426)
Q Consensus        23 P~GIa--Vd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~  100 (426)
                      ...++  ..+++.++++-...+.|..++.....  .+..+.+..     +         -.....|+++++|+++++-..
T Consensus       171 ~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~-----h---------~~~v~~~~~s~~~~~l~s~~~  234 (437)
T 3gre_A          171 AVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLE--RLQIIENSP-----R---------HGAVSSICIDEECCVLILGTT  234 (437)
T ss_dssp             EEEEEEEECSSCEEEEEEETTSEEEEEETTTCC--EEEEEECCG-----G---------GCCEEEEEECTTSCEEEEEET
T ss_pred             ceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe--eeEEEccCC-----C---------CCceEEEEECCCCCEEEEEcC
Confidence            34444  44678888887788999999986421  223332210     0         123578999999998887777


Q ss_pred             CCEEEEEc-C-CC-cEEEe-CCccCCCCCCCCCCcccccCCCCCeeEE---ECCCCeEEEEECCCCeEEEEEcCCCc
Q 014345          101 NMAIRKIS-D-SG-VTTIA-GGKWGRGGGHVDGPSEDAKFSNDFDVVY---IGSSCSLLVIDRGNRAIREIQLHFDD  170 (426)
Q Consensus       101 N~rIrk~d-~-g~-VstIa-Gg~~g~~~G~~dG~~~~a~f~~P~gIa~---vd~~G~LYVaDsgN~rIr~I~l~~~~  170 (426)
                      ++.|+.+| . +. +.++. +...                 .-..|++   ..+++.++++-..++.|+.+++....
T Consensus       235 dg~i~iwd~~~~~~~~~~~~~~~~-----------------~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~  294 (437)
T 3gre_A          235 RGIIDIWDIRFNVLIRSWSFGDHA-----------------PITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGH  294 (437)
T ss_dssp             TSCEEEEETTTTEEEEEEBCTTCE-----------------EEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTE
T ss_pred             CCeEEEEEcCCccEEEEEecCCCC-----------------ceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCc
Confidence            88899998 3 33 23332 2100                 0122321   12345666666666777777776544

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=82.35  E-value=26  Score=37.25  Aligned_cols=118  Identities=13%  Similarity=0.097  Sum_probs=69.1

Q ss_pred             CceEEEEcCC--CcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcC---------
Q 014345           22 EPYSVEVLPG--GELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD---------   90 (426)
Q Consensus        22 ~P~GIaVd~d--G~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~---------   90 (426)
                      ...++++.++  |+++++-..++.|..++...........+.+.                -.....+++++         
T Consensus       101 ~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~----------------~~~v~~l~~~p~~~~~~~~~  164 (753)
T 3jro_A          101 SVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAH----------------AIGVNSASWAPATIEEDGEH  164 (753)
T ss_dssp             CEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECC----------------SSCEEEEEECCCC-------
T ss_pred             CeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecC----------------CCceEEEEecCccccccccc
Confidence            5678888887  77777777788888888764211112222221                11234566666         


Q ss_pred             ----CCCEEEEECCCCEEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCC---CeEEEEECCCCe
Q 014345           91 ----RGNIYIADTMNMAIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSS---CSLLVIDRGNRA  160 (426)
Q Consensus        91 ----dG~LYVADt~N~rIrk~d--~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~---G~LYVaDsgN~r  160 (426)
                          ++.++++-..++.|+.++  .+. ...+.....    ++         -....+|+ +.++   +.++++-...+.
T Consensus       165 ~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~----~h---------~~~V~~l~-~sp~~~~~~~l~s~s~Dg~  230 (753)
T 3jro_A          165 NGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE----GH---------SDWVRDVA-WSPTVLLRSYLASVSQDRT  230 (753)
T ss_dssp             --CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEEC----CC---------SSCEEEEE-ECCCCSSSEEEEEEESSSC
T ss_pred             ccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeec----CC---------CCcEEEEE-eccCCCCCCEEEEEecCCE
Confidence                467676666678888887  332 111111000    00         01245677 4666   787777777889


Q ss_pred             EEEEEcCCC
Q 014345          161 IREIQLHFD  169 (426)
Q Consensus       161 Ir~I~l~~~  169 (426)
                      |+.+++...
T Consensus       231 I~iwd~~~~  239 (753)
T 3jro_A          231 CIIWTQDNE  239 (753)
T ss_dssp             EEEEEESSS
T ss_pred             EEEecCCCC
Confidence            999988764

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=82.10  E-value=15  Score=40.32  Aligned_cols=111  Identities=11%  Similarity=0.066  Sum_probs=69.7

Q ss_pred             CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCC
Q 014345           22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN  101 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N  101 (426)
                      ...+|+++++|.++++-...+.|+.++..+.   ........        .        ..-..|++.+ |.+.++=..+
T Consensus        19 ~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~---~~~~~~~~--------~--------~~V~~l~fsp-g~~L~S~s~D   78 (902)
T 2oaj_A           19 KPIAAAFDFTQNLLAIATVTGEVHIYGQQQV---EVVIKLED--------R--------SAIKEMRFVK-GIYLVVINAK   78 (902)
T ss_dssp             CEEEEEEETTTTEEEEEETTSEEEEECSTTC---EEEEECSS--------C--------CCEEEEEEET-TTEEEEEETT
T ss_pred             CcEEEEECCCCCEEEEEeCCCEEEEEeCCCc---EEEEEcCC--------C--------CCEEEEEEcC-CCEEEEEECc
Confidence            5789999999998888888899999987632   22111111        0        0135788988 7744444457


Q ss_pred             CEEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCce
Q 014345          102 MAIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDC  171 (426)
Q Consensus       102 ~rIrk~d--~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~  171 (426)
                      +.|+.++  .+. +.++...                  .....++ +++++.++++-..++.|+.+++....+
T Consensus        79 ~~v~lWd~~~~~~~~~~~~~------------------~~V~~v~-~sp~g~~l~sgs~dg~V~lwd~~~~~~  132 (902)
T 2oaj_A           79 DTVYVLSLYSQKVLTTVFVP------------------GKITSID-TDASLDWMLIGLQNGSMIVYDIDRDQL  132 (902)
T ss_dssp             CEEEEEETTTCSEEEEEECS------------------SCEEEEE-CCTTCSEEEEEETTSCEEEEETTTTEE
T ss_pred             CeEEEEECCCCcEEEEEcCC------------------CCEEEEE-ECCCCCEEEEEcCCCcEEEEECCCCcc
Confidence            8899988  333 3333210                  0134555 456666555555677888888776544

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=82.00  E-value=35  Score=32.57  Aligned_cols=130  Identities=9%  Similarity=0.105  Sum_probs=71.0

Q ss_pred             CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEE-EecCCC-CcccccCCcccccccCCcceEE--EcCCCCEEEE
Q 014345           22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKL-VAGSAE-GYSGHVDGKPREARMNHPKGLT--VDDRGNIYIA   97 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~-vaG~~~-G~~G~~dG~a~~A~Ln~P~GIa--Vd~dG~LYVA   97 (426)
                      ...+|++.++++++++-...+.|..++.+....+.... ..+... ...-..++     .-.....++  ..+++.++++
T Consensus       113 ~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~  187 (437)
T 3gre_A          113 TVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFG-----KNEYAVRMRAFVNEEKSLLVA  187 (437)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGS-----SCCCEEEEEEEECSSCEEEEE
T ss_pred             CEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcc-----cccCceEEEEEEcCCCCEEEE
Confidence            46788999988877777777888887663100011111 111100 00000000     001122333  4467887777


Q ss_pred             ECCCCEEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceE
Q 014345           98 DTMNMAIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCA  172 (426)
Q Consensus        98 Dt~N~rIrk~d--~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~~  172 (426)
                      -..++.|+.+|  .+. +.++.+...               -.....++ +.+++.++++-..++.|+.+++....+.
T Consensus       188 ~~~d~~i~iwd~~~~~~~~~~~~~~h---------------~~~v~~~~-~s~~~~~l~s~~~dg~i~iwd~~~~~~~  249 (437)
T 3gre_A          188 LTNLSRVIIFDIRTLERLQIIENSPR---------------HGAVSSIC-IDEECCVLILGTTRGIIDIWDIRFNVLI  249 (437)
T ss_dssp             EETTSEEEEEETTTCCEEEEEECCGG---------------GCCEEEEE-ECTTSCEEEEEETTSCEEEEETTTTEEE
T ss_pred             EeCCCeEEEEeCCCCeeeEEEccCCC---------------CCceEEEE-ECCCCCEEEEEcCCCeEEEEEcCCccEE
Confidence            77789999999  333 344443100               01345666 4667777776667788888888765554

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=81.96  E-value=57  Score=34.72  Aligned_cols=72  Identities=11%  Similarity=0.040  Sum_probs=49.2

Q ss_pred             ceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccc-----cEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEE
Q 014345           23 PYSVEVLPGGELLILDSANSNLYRISSSLSLYSR-----PKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIA   97 (426)
Q Consensus        23 P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~-----v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVA   97 (426)
                      -++++++|||.++++-...+.|..++..+.....     +.++-+..   .|+         .+.-..|++.++|  +++
T Consensus       132 v~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~---~gh---------~~~V~sVawSPdg--Laa  197 (588)
T 2j04_A          132 YHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSD---AGS---------KDWVTHIVWYEDV--LVA  197 (588)
T ss_dssp             EEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSC---TTC---------CCCEEEEEEETTE--EEE
T ss_pred             EEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeeccc---ccc---------cccEEEEEEcCCc--EEE
Confidence            5789999999977777788999999988642111     23332221   122         2345789999999  556


Q ss_pred             ECCCCEEEEEc
Q 014345           98 DTMNMAIRKIS  108 (426)
Q Consensus        98 Dt~N~rIrk~d  108 (426)
                      -...+.|+.++
T Consensus       198 ss~D~tVrlWd  208 (588)
T 2j04_A          198 ALSNNSVFSMT  208 (588)
T ss_dssp             EETTCCEEEEC
T ss_pred             EeCCCeEEEEE
Confidence            56678899888

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=81.57  E-value=3.9  Score=40.82  Aligned_cols=116  Identities=7%  Similarity=-0.087  Sum_probs=68.6

Q ss_pred             CceEEEEcCCCcEEE----EECCCCeEEEEeCCCCccc-----c-cEEEecCCCCcccccCCcccccccCCcceEEEcCC
Q 014345           22 EPYSVEVLPGGELLI----LDSANSNLYRISSSLSLYS-----R-PKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDR   91 (426)
Q Consensus        22 ~P~GIaVd~dG~LYV----aD~~n~rI~kid~dg~~~g-----~-v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~d   91 (426)
                      ...+|+++++|++++    +-...+.|..++......+     + +..+. .   ..|+         -....+|++.++
T Consensus        94 ~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~-~---~~~h---------~~~V~~v~~~p~  160 (434)
T 2oit_A           94 PIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHK-L---LKDA---------GGMVIDMKWNPT  160 (434)
T ss_dssp             CEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEE-C---CCSG---------GGSEEEEEECSS
T ss_pred             cccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeee-c---cCCC---------CCceEEEEECCC
Confidence            478999999998665    4555678888876421000     0 00010 0   0111         113578999987


Q ss_pred             -CCEEEEECCCCEEEEEc-CCCcEE--EeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcC
Q 014345           92 -GNIYIADTMNMAIRKIS-DSGVTT--IAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLH  167 (426)
Q Consensus        92 -G~LYVADt~N~rIrk~d-~g~Vst--IaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~  167 (426)
                       ++++++-..++.|+.+| ..+...  ..+.                 -....+++ ..++|..+++-..++.|+.++..
T Consensus       161 ~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~-----------------~~~v~~v~-wspdg~~lasgs~dg~v~iwd~~  222 (434)
T 2oit_A          161 VPSMVAVCLADGSIAVLQVTETVKVCATLPS-----------------TVAVTSVC-WSPKGKQLAVGKQNGTVVQYLPT  222 (434)
T ss_dssp             CTTEEEEEETTSCEEEEEESSSEEEEEEECG-----------------GGCEEEEE-ECTTSSCEEEEETTSCEEEECTT
T ss_pred             CCCEEEEEECCCeEEEEEcCCCcceeeccCC-----------------CCceeEEE-EcCCCCEEEEEcCCCcEEEEccC
Confidence             78887766788899888 333221  1110                 01346677 46667666666677889988887


Q ss_pred             C
Q 014345          168 F  168 (426)
Q Consensus       168 ~  168 (426)
                      +
T Consensus       223 ~  223 (434)
T 2oit_A          223 L  223 (434)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=81.57  E-value=31  Score=31.31  Aligned_cols=126  Identities=10%  Similarity=0.023  Sum_probs=63.9

Q ss_pred             CceEEEEcCC---CcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEE
Q 014345           22 EPYSVEVLPG---GELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIAD   98 (426)
Q Consensus        22 ~P~GIaVd~d---G~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVAD   98 (426)
                      ...++++.++   |+++++-..++.|..++..... ..+..+.+..        +...  .+....+++++++++++++-
T Consensus        67 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~--------~~v~--~~~~~~~~~~s~~~~~l~~~  135 (357)
T 3i2n_A           67 PIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPE-MPVYSVKGHK--------EIIN--AIDGIGGLGIGEGAPEIVTG  135 (357)
T ss_dssp             CEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCS-SCSEEECCCS--------SCEE--EEEEESGGGCC-CCCEEEEE
T ss_pred             cEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCC-ccEEEEEecc--------cceE--EEeeccccccCCCccEEEEE
Confidence            4567888887   5766666677888888876421 1233332221        1000  01111122456778877777


Q ss_pred             CCCCEEEEEc--CCC--cEEEeCCccCCCCCCCCCCcccccCCCCCeeEE---ECCCCeEEEEECCCCeEEEEEcCCCce
Q 014345           99 TMNMAIRKIS--DSG--VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVY---IGSSCSLLVIDRGNRAIREIQLHFDDC  171 (426)
Q Consensus        99 t~N~rIrk~d--~g~--VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~---vd~~G~LYVaDsgN~rIr~I~l~~~~~  171 (426)
                      ..++.|+.++  .+.  +.++..... .    ..        .....+++   ..+++.++++-..++.|+.+++....+
T Consensus       136 ~~d~~i~vwd~~~~~~~~~~~~~~~~-~----~~--------~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~  202 (357)
T 3i2n_A          136 SRDGTVKVWDPRQKDDPVANMEPVQG-E----NK--------RDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMAL  202 (357)
T ss_dssp             ETTSCEEEECTTSCSSCSEEECCCTT-S----CC--------CCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEE
T ss_pred             eCCCeEEEEeCCCCCCcceeccccCC-C----CC--------CceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCce
Confidence            6778899888  332  344432110 0    00        01122221   235566666655667777777766544

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=80.98  E-value=8.1  Score=39.20  Aligned_cols=71  Identities=10%  Similarity=0.111  Sum_probs=39.2

Q ss_pred             ceEEEcCCCCEEEE---ECCC-CEEEEEc--CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCe-EEEEEC
Q 014345           84 KGLTVDDRGNIYIA---DTMN-MAIRKIS--DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCS-LLVIDR  156 (426)
Q Consensus        84 ~GIaVd~dG~LYVA---Dt~N-~rIrk~d--~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~-LYVaDs  156 (426)
                      ..+++++||+.+++   |..+ ..|+.++  .+...++.+...                 ....++ ..++|. |+.++.
T Consensus       153 ~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~-----------------~~~~~~-~SpDG~~l~~~~~  214 (582)
T 3o4h_A          153 FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEG-----------------SFSSAS-ISPGMKVTAGLET  214 (582)
T ss_dssp             CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEECCSSC-----------------EEEEEE-ECTTSCEEEEEEC
T ss_pred             ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecCCC-----------------ccccce-ECCCCCEEEEccC
Confidence            57889999985552   2222 5688888  344666644210                 114455 355554 444443


Q ss_pred             CC-CeEEEEEcCCCceE
Q 014345          157 GN-RAIREIQLHFDDCA  172 (426)
Q Consensus       157 gN-~rIr~I~l~~~~~~  172 (426)
                      .+ ..|+.+++++..+.
T Consensus       215 ~~~~~i~~~d~~~~~~~  231 (582)
T 3o4h_A          215 AREARLVTVDPRDGSVE  231 (582)
T ss_dssp             SSCEEEEEECTTTCCEE
T ss_pred             CCeeEEEEEcCCCCcEE
Confidence            22 26777777655443

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=80.21  E-value=33  Score=30.89  Aligned_cols=81  Identities=10%  Similarity=0.202  Sum_probs=51.8

Q ss_pred             EEEEecCCCCCCCceEEEEcCC-CcEEEEECCCCeEEEEeCCCCcc--ccc-EEEecCCCCcccccCCcccccccCCcce
Q 014345           10 VETVFDGSKLGIEPYSVEVLPG-GELLILDSANSNLYRISSSLSLY--SRP-KLVAGSAEGYSGHVDGKPREARMNHPKG   85 (426)
Q Consensus        10 v~tv~~g~~l~~~P~GIaVd~d-G~LYVaD~~n~rI~kid~dg~~~--g~v-~~vaG~~~G~~G~~dG~a~~A~Ln~P~G   85 (426)
                      ++..+.|..  ..-++|++.|+ ++++++-...+.|..++......  +.. ..+.|       +         -.....
T Consensus        30 l~~tL~GH~--~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~-------h---------~~~V~~   91 (340)
T 4aow_A           30 LRGTLKGHN--GWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRG-------H---------SHFVSD   91 (340)
T ss_dssp             EEEEECCCS--SCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECC-------C---------SSCEEE
T ss_pred             EEEEECCcc--CCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeC-------C---------CCCEEE
Confidence            333444544  24689999986 67888777778888887653210  111 11111       1         123568


Q ss_pred             EEEcCCCCEEEEECCCCEEEEEc
Q 014345           86 LTVDDRGNIYIADTMNMAIRKIS  108 (426)
Q Consensus        86 IaVd~dG~LYVADt~N~rIrk~d  108 (426)
                      +++.++|+++++-..++.|+.++
T Consensus        92 ~~~s~dg~~l~s~~~d~~i~~~~  114 (340)
T 4aow_A           92 VVISSDGQFALSGSWDGTLRLWD  114 (340)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEE
T ss_pred             EEECCCCCEEEEEcccccceEEe
Confidence            99999999888777788898888

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=80.12  E-value=15  Score=39.30  Aligned_cols=117  Identities=12%  Similarity=0.091  Sum_probs=72.2

Q ss_pred             CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCC
Q 014345           22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN  101 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N  101 (426)
                      .-.+++.+|||..+++-+.++.|+.++.+    +.+..+. .. .   ....       ..-..|++.++|++.++-..+
T Consensus        87 ~V~~vawSPdG~~LAs~s~dg~V~iwd~~----~~l~~l~-~~-~---~~~~-------~sv~svafSPDG~~LAsgs~D  150 (588)
T 2j04_A           87 YPRVCKPSPIDDWMAVLSNNGNVSVFKDN----KMLTNLD-SK-G---NLSS-------RTYHCFEWNPIESSIVVGNED  150 (588)
T ss_dssp             CEEEEEECSSSSCEEEEETTSCEEEEETT----EEEEECC-CS-S---CSTT-------TCEEEEEECSSSSCEEEEETT
T ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEeCC----ceeeecc-CC-C---cccc-------ccEEEEEEcCCCCEEEEEcCC
Confidence            57899999999977777788889999865    2222221 10 0   0000       013589999999877776678


Q ss_pred             CEEEEEc-CCC-c--------EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCc
Q 014345          102 MAIRKIS-DSG-V--------TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDD  170 (426)
Q Consensus       102 ~rIrk~d-~g~-V--------stIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~  170 (426)
                      +.|+.++ .++ .        .++-+...    |         ...+-..|++ .++|  +++-...+.|+.+++.+..
T Consensus       151 GtVkIWd~~~~~l~~~~~i~l~ti~~~~~----g---------h~~~V~sVaw-SPdg--Laass~D~tVrlWd~~~~~  213 (588)
T 2j04_A          151 GELQFFSIRKNSENTPEFYFESSIRLSDA----G---------SKDWVTHIVW-YEDV--LVAALSNNSVFSMTVSASS  213 (588)
T ss_dssp             SEEEEEECCCCTTTCCCCEEEEEEECSCT----T---------CCCCEEEEEE-ETTE--EEEEETTCCEEEECCCSSS
T ss_pred             CEEEEEECCCCccccccceeeeeeecccc----c---------ccccEEEEEE-cCCc--EEEEeCCCeEEEEECCCCc
Confidence            9999999 333 2        44432211    1         1134567774 4566  4555567888888877655

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	426
d1q7fa_	279	b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (D	2e-07
d1rwia_	260	b.68.9.1 (A:) Serine/threonine-protein kinase PknD	8e-05

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 279

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 50.0 bits (118), Expect = 2e-07
 Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 5/94 (5%)

Query: 56  RPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMAIRKISDSGVTTI 115
           R +++     G  G ++G+        P G+ V+ + +I +ADT N  I+     G    
Sbjct: 3   RQRMIYHCKFGEFGVMEGQ-----FTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKF 57

Query: 116 AGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSC 149
             G+ G+    +  P+  A   N  D++    S 
Sbjct: 58  QFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSP 91

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Length = 260

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 41.8 bits (96), Expect = 8e-05
 Identities = 9/32 (28%), Positives = 16/32 (50%)

Query: 80  MNHPKGLTVDDRGNIYIADTMNMAIRKISDSG 111
           +N P  + VD    +Y+AD  N  + K++   
Sbjct: 223 LNTPLAVAVDSDRTVYVADRGNDRVVKLTSLE 254

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	426
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.64
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.62
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.59
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.54
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.41
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.35
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.31
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.28
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	99.24
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	99.23
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	99.21
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	99.2
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.2
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.09
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.81
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.8
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	98.03
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.03
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	97.96
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	97.95
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	97.82
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	97.79
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	97.7
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	97.59
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	97.58
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	97.37
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	97.09
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	97.07
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	96.94
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	96.87
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	96.25
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	95.88
d1tbga_	340	beta1-subunit of the signal-transducing G protein	95.69
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	95.62
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	95.46
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	95.42
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	95.05
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	94.94
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	94.91
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	94.88
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	94.71
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	94.17
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	94.14
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	94.06
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	94.05
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	93.97
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	93.94
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	93.51
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	93.23
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	92.96
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	92.56
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	92.49
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	91.22
d1tbga_	340	beta1-subunit of the signal-transducing G protein	90.6
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	90.59
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	90.35
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	89.08
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	87.17
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	86.49
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	85.97
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	80.33

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.64  E-value=9.2e-16  Score=142.89  Aligned_cols=114  Identities=20%  Similarity=0.356  Sum_probs=93.9

Q ss_pred             CCceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECC
Q 014345           21 IEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTM  100 (426)
Q Consensus        21 ~~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~  100 (426)
                      ..|.+|+++++|++||+|..+++|.+++.++.    .......              ..|..|.||++|++|+|||+|..
T Consensus       140 ~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~----~~~~~~~--------------~~~~~p~gi~~d~~g~l~vsd~~  201 (260)
T d1rwia_         140 NDPDGVAVDNSGNVYVTDTDNNRVVKLEAESN----NQVVLPF--------------TDITAPWGIAVDEAGTVYVTEHN  201 (260)
T ss_dssp             CSCCEEEECTTCCEEEEEGGGTEEEEECTTTC----CEEECCC--------------SSCCSEEEEEECTTCCEEEEETT
T ss_pred             CCcceeeecCCCCEeeeccccccccccccccc----eeeeeec--------------cccCCCccceeeeeeeeeeeecC
Confidence            48999999999999999999999999999853    2222211              23788999999999999999999


Q ss_pred             CCEEEEEc-CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCC
Q 014345          101 NMAIRKIS-DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHF  168 (426)
Q Consensus       101 N~rIrk~d-~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~  168 (426)
                      +++|.+++ ++...++...               ..|..|.+|+ ++++|+|||+|.++++|++|+..+
T Consensus       202 ~~~i~~~~~~~~~~~~~~~---------------~~~~~P~~i~-~d~~g~l~vad~~~~rI~~i~~~~  254 (260)
T d1rwia_         202 TNQVVKLLAGSTTSTVLPF---------------TGLNTPLAVA-VDSDRTVYVADRGNDRVVKLTSLE  254 (260)
T ss_dssp             TTEEEEECTTCSCCEECCC---------------CSCCCEEEEE-ECTTCCEEEEEGGGTEEEEECCCG
T ss_pred             CCEEEEEeCCCCeEEEEcc---------------CCCCCeEEEE-EeCCCCEEEEECCCCEEEEEeCCC
Confidence            99999999 5555555431               1367899999 689999999999999999998654

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.62  E-value=5.7e-15  Score=137.42  Aligned_cols=133  Identities=19%  Similarity=0.325  Sum_probs=106.5

Q ss_pred             CCceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECC
Q 014345           21 IEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTM  100 (426)
Q Consensus        21 ~~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~  100 (426)
                      ..|++|+++++|+||++|..++++.+++..+.    ...+...              ..+..|.||+++++|+|||+|..
T Consensus        98 ~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~----~~~~~~~--------------~~~~~p~~i~~~~~g~~~v~~~~  159 (260)
T d1rwia_          98 NYPEGLAVDTQGAVYVADRGNNRVVKLAAGSK----TQTVLPF--------------TGLNDPDGVAVDNSGNVYVTDTD  159 (260)
T ss_dssp             CSEEEEEECTTCCEEEEEGGGTEEEEECTTCS----SCEECCC--------------CSCCSCCEEEECTTCCEEEEEGG
T ss_pred             eecccccccccceeEeeccccccccccccccc----eeeeeee--------------cccCCcceeeecCCCCEeeeccc
Confidence            47999999999999999999999999998742    2223221              12778999999999999999999


Q ss_pred             CCEEEEEc-CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceEeec--CC
Q 014345          101 NMAIRKIS-DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQY--GS  177 (426)
Q Consensus       101 N~rIrk~d-~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~~~~~--~~  177 (426)
                      +++|.+++ ++.......               ...|..|++|+ +|++|+|||+|..+++|.+++..+.......  ..
T Consensus       160 ~~~i~~~d~~~~~~~~~~---------------~~~~~~p~gi~-~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~  223 (260)
T d1rwia_         160 NNRVVKLEAESNNQVVLP---------------FTDITAPWGIA-VDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGL  223 (260)
T ss_dssp             GTEEEEECTTTCCEEECC---------------CSSCCSEEEEE-ECTTCCEEEEETTTTEEEEECTTCSCCEECCCCSC
T ss_pred             cccccccccccceeeeee---------------ccccCCCccce-eeeeeeeeeeecCCCEEEEEeCCCCeEEEEccCCC
Confidence            99999999 555444332               12467899999 7899999999999999999998876665543  34


Q ss_pred             CCcceEEEEe
Q 014345          178 SFPLGIAVLL  187 (426)
Q Consensus       178 g~P~GIAv~~  187 (426)
                      ..|.+||++.
T Consensus       224 ~~P~~i~~d~  233 (260)
T d1rwia_         224 NTPLAVAVDS  233 (260)
T ss_dssp             CCEEEEEECT
T ss_pred             CCeEEEEEeC
Confidence            5799999984

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.59  E-value=2.2e-14  Score=134.75  Aligned_cols=151  Identities=17%  Similarity=0.270  Sum_probs=110.1

Q ss_pred             CCCCceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCC---CC-----------------------ccc---
Q 014345           19 LGIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSA---EG-----------------------YSG---   69 (426)
Q Consensus        19 l~~~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~---~G-----------------------~~G---   69 (426)
                      .+..|+||||+++|+|||+|..|+||++|+++|..    ....+..   .+                       ..+   
T Consensus        21 ~f~~P~gvavd~dg~i~VaD~~n~rI~v~d~~G~~----~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~   96 (279)
T d1q7fa_          21 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRF----KFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQ   96 (279)
T ss_dssp             CBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCE----EEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEE
T ss_pred             eECCccEEEEcCCCCEEEEECCCCEEEEEeCCCCE----EEEecccCCCcccccccccccccccccccceeccCCccccc
Confidence            35689999999999999999999999999998643    1111110   00                       000   


Q ss_pred             --ccCCc----ccccccCCcceEEEcCCCCEEEEECCCCEEEEEc-CCCcEEEeCCccCCCCCCCCCCcccccCCCCCee
Q 014345           70 --HVDGK----PREARMNHPKGLTVDDRGNIYIADTMNMAIRKIS-DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDV  142 (426)
Q Consensus        70 --~~dG~----a~~A~Ln~P~GIaVd~dG~LYVADt~N~rIrk~d-~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gI  142 (426)
                        ..+|.    .....++.|.+++++++|++|++|..++++.+++ ++.+....+.              ...+..|.+|
T Consensus        97 ~~~~~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~~~~~~g~--------------~~~~~~~~~i  162 (279)
T d1q7fa_          97 IYNQYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGC--------------SKHLEFPNGV  162 (279)
T ss_dssp             EECTTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEEC--------------TTTCSSEEEE
T ss_pred             cccccccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCCceeecccc--------------ccccccccee
Confidence              01121    1123578899999999999999999999999999 6664333331              1246789999


Q ss_pred             EEECCCCeEEEEECCCCeEEEEEcCCCceEeec---CCCCcceEEEEec
Q 014345          143 VYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQY---GSSFPLGIAVLLA  188 (426)
Q Consensus       143 a~vd~~G~LYVaDsgN~rIr~I~l~~~~~~~~~---~~g~P~GIAv~~g  188 (426)
                      + ++++++|||+|..+++|.+++.++.......   ....|.|||++..
T Consensus       163 ~-~d~~g~i~v~d~~~~~V~~~d~~G~~~~~~g~~g~~~~P~giavD~~  210 (279)
T d1q7fa_         163 V-VNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSN  210 (279)
T ss_dssp             E-ECSSSEEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTT
T ss_pred             e-eccceeEEeeeccccceeeeecCCceeeeecccccccCCcccccccC
Confidence            8 7999999999999999999999876544332   3456999999854

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.54  E-value=1.3e-13  Score=129.31  Aligned_cols=137  Identities=15%  Similarity=0.218  Sum_probs=105.3

Q ss_pred             CCCceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEEC
Q 014345           20 GIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADT   99 (426)
Q Consensus        20 ~~~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt   99 (426)
                      ...|.+++++++|.+|++|..+++|.+++.++.    +....|..             ..+..|.+|++|++|+|||+|.
T Consensus       113 ~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~----~~~~~g~~-------------~~~~~~~~i~~d~~g~i~v~d~  175 (279)
T d1q7fa_         113 LQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN----VLHKFGCS-------------KHLEFPNGVVVNDKQEIFISDN  175 (279)
T ss_dssp             CSCEEEEEECTTSCEEEEETTTTEEEEECTTSC----EEEEEECT-------------TTCSSEEEEEECSSSEEEEEEG
T ss_pred             ccccceeccccCCcEEEEeeccceeeEeccCCc----eeeccccc-------------ccccccceeeeccceeEEeeec
Confidence            448999999999999999999999999999853    22222221             2377899999999999999999


Q ss_pred             CCCEEEEEc-CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECC-CCeEEEEEcCCCceEe---e
Q 014345          100 MNMAIRKIS-DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRG-NRAIREIQLHFDDCAY---Q  174 (426)
Q Consensus       100 ~N~rIrk~d-~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsg-N~rIr~I~l~~~~~~~---~  174 (426)
                      .+++|++++ +|......+.              ...|..|.+|+ +|++|+|||+|.. +++|.+++.++.-...   .
T Consensus       176 ~~~~V~~~d~~G~~~~~~g~--------------~g~~~~P~gia-vD~~G~i~Vad~~~~~~v~~f~~~G~~~~~~~~~  240 (279)
T d1q7fa_         176 RAHCVKVFNYEGQYLRQIGG--------------EGITNYPIGVG-INSNGEILIADNHNNFNLTIFTQDGQLISALESK  240 (279)
T ss_dssp             GGTEEEEEETTCCEEEEESC--------------TTTSCSEEEEE-ECTTCCEEEEECSSSCEEEEECTTSCEEEEEEES
T ss_pred             cccceeeeecCCceeeeecc--------------cccccCCcccc-cccCCeEEEEECCCCcEEEEECCCCCEEEEEeCC
Confidence            999999999 6664332231              12577899999 7999999999986 4579999987753322   2


Q ss_pred             cCCCCcceEEEEec
Q 014345          175 YGSSFPLGIAVLLA  188 (426)
Q Consensus       175 ~~~g~P~GIAv~~g  188 (426)
                      .....|.+||++..
T Consensus       241 ~~~~~p~~vav~~d  254 (279)
T d1q7fa_         241 VKHAQCFDVALMDD  254 (279)
T ss_dssp             SCCSCEEEEEEETT
T ss_pred             CCCCCEeEEEEeCC
Confidence            22346999998854

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.41  E-value=7e-13  Score=127.37  Aligned_cols=132  Identities=11%  Similarity=0.106  Sum_probs=94.6

Q ss_pred             EEEecCCCCCCCceEEEEcCCCcEEEEECCC------CeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcc
Q 014345           11 ETVFDGSKLGIEPYSVEVLPGGELLILDSAN------SNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPK   84 (426)
Q Consensus        11 ~tv~~g~~l~~~P~GIaVd~dG~LYVaD~~n------~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~   84 (426)
                      ..+.........|++++++++|+|||+|..+      +.|+++++++.   .+..+..                .+..|+
T Consensus       120 ~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~---~~~~~~~----------------~~~~pn  180 (319)
T d2dg1a1         120 QDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFR---TVTPIIQ----------------NISVAN  180 (319)
T ss_dssp             EEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSC---CEEEEEE----------------EESSEE
T ss_pred             eeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccc---eeEEEee----------------ccceee
Confidence            3344444445579999999999999999754      35889988852   3344432                166799


Q ss_pred             eEEEcCCCC-EEEEECCCCEEEEEc---CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCe
Q 014345           85 GLTVDDRGN-IYIADTMNMAIRKIS---DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRA  160 (426)
Q Consensus        85 GIaVd~dG~-LYVADt~N~rIrk~d---~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~r  160 (426)
                      ||+++++|+ |||+|+.+++|++++   ++......+....         .....+..|.+|+ +|.+|+|||++.++++
T Consensus       181 Gia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~---------~~~~~~~~PdGl~-vD~~G~l~Va~~~~g~  250 (319)
T d2dg1a1         181 GIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIP---------YYFTGHEGPDSCC-IDSDDNLYVAMYGQGR  250 (319)
T ss_dssp             EEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEE---------EECCSSSEEEEEE-EBTTCCEEEEEETTTE
T ss_pred             eeeeccccceEEEecccCCceEEEEEcCCCceeccccceee---------eccCCccceeeee-EcCCCCEEEEEcCCCE
Confidence            999999986 999999999999998   3332222211000         0111234589998 7999999999999999


Q ss_pred             EEEEEcCCCce
Q 014345          161 IREIQLHFDDC  171 (426)
Q Consensus       161 Ir~I~l~~~~~  171 (426)
                      |++|++++...
T Consensus       251 V~~~~p~G~~l  261 (319)
T d2dg1a1         251 VLVFNKRGYPI  261 (319)
T ss_dssp             EEEECTTSCEE
T ss_pred             EEEECCCCcEE
Confidence            99999887543

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.35  E-value=3e-11  Score=115.97  Aligned_cols=149  Identities=16%  Similarity=0.181  Sum_probs=106.7

Q ss_pred             EEEEecCCCCCCCceEEEEcCCCcEEEEECC-------CCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCC
Q 014345           10 VETVFDGSKLGIEPYSVEVLPGGELLILDSA-------NSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNH   82 (426)
Q Consensus        10 v~tv~~g~~l~~~P~GIaVd~dG~LYVaD~~-------n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~   82 (426)
                      ++++.++..   .|.|++++++|+|||++..       +++|+++++++.   ....+.... . .         ..-..
T Consensus        10 ~~~v~~~~~---g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~---~~~~~~~~~-~-~---------~~~g~   72 (314)
T d1pjxa_          10 FTKVTEDIP---GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTG---KKTVICKPE-V-N---------GYGGI   72 (314)
T ss_dssp             CEEEECCCT---TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTC---CEEEEECCE-E-T---------TEECC
T ss_pred             eEEeecCCC---CCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCC---cEEEEECCc-c-c---------cCCCc
Confidence            455666555   7999999999999999864       478999999853   333343221 0 0         01235


Q ss_pred             cceEEEcCCCC-EEEEECCCCEEEEEc-CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECC---
Q 014345           83 PKGLTVDDRGN-IYIADTMNMAIRKIS-DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRG---  157 (426)
Q Consensus        83 P~GIaVd~dG~-LYVADt~N~rIrk~d-~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsg---  157 (426)
                      |.||+++++|+ |||+|.. ++|.+++ +++..+++....           ....|+.|++|+ ++++|+|||+|..   
T Consensus        73 P~Gl~~~~dg~~l~vad~~-~~i~~~~~~g~~~~~~~~~~-----------~g~~~~~pndl~-~d~~G~lyvtd~~~~~  139 (314)
T d1pjxa_          73 PAGCQCDRDANQLFVADMR-LGLLVVQTDGTFEEIAKKDS-----------EGRRMQGCNDCA-FDYEGNLWITAPAGEV  139 (314)
T ss_dssp             EEEEEECSSSSEEEEEETT-TEEEEEETTSCEEECCSBCT-----------TSCBCBCCCEEE-ECTTSCEEEEECBCBC
T ss_pred             ceeEEEeCCCCEEEEEECC-CeEEEEeCCCcEEEEEeccc-----------cccccCCCcEEE-ECCCCCEEEecCccCc
Confidence            99999999986 8999975 6789998 666665543211           112578899999 7999999999964   


Q ss_pred             ------------CCeEEEEEcCCCceEeecCCCCcceEEEEec
Q 014345          158 ------------NRAIREIQLHFDDCAYQYGSSFPLGIAVLLA  188 (426)
Q Consensus       158 ------------N~rIr~I~l~~~~~~~~~~~g~P~GIAv~~g  188 (426)
                                  .++|.++++++...........|.||++...
T Consensus       140 ~~~~~~~~~~~~~G~v~~~~~dg~~~~~~~~~~~pNGi~~~~d  182 (314)
T d1pjxa_         140 APADYTRSMQEKFGSIYCFTTDGQMIQVDTAFQFPNGIAVRHM  182 (314)
T ss_dssp             TTSCCCBTTSSSCEEEEEECTTSCEEEEEEEESSEEEEEEEEC
T ss_pred             ccccccceeccCCceEEEEeecCceeEeeCCcceeeeeEECCC
Confidence                        3479999888765555566677999998754

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.31  E-value=1.7e-11  Score=117.70  Aligned_cols=132  Identities=14%  Similarity=0.135  Sum_probs=94.7

Q ss_pred             CceEEEEcCCCcEEEEECC---------------CCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceE
Q 014345           22 EPYSVEVLPGGELLILDSA---------------NSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGL   86 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~---------------n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GI   86 (426)
                      .|++++++++|+|||+|..               .++|++++++|    ....++..                +..|+||
T Consensus       118 ~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg----~~~~~~~~----------------~~~pNGi  177 (314)
T d1pjxa_         118 GCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG----QMIQVDTA----------------FQFPNGI  177 (314)
T ss_dssp             CCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS----CEEEEEEE----------------ESSEEEE
T ss_pred             CCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecC----ceeEeeCC----------------cceeeee
Confidence            6999999999999999953               34788888874    33444321                6779999


Q ss_pred             EEcCCCC-----EEEEECCCCEEEEEc---CCCcEE--EeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEEC
Q 014345           87 TVDDRGN-----IYIADTMNMAIRKIS---DSGVTT--IAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDR  156 (426)
Q Consensus        87 aVd~dG~-----LYVADt~N~rIrk~d---~g~Vst--IaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDs  156 (426)
                      +++++++     |||+|+.+++|++++   ++.+..  +.....+            .....|.+|+ +|.+|+|||++.
T Consensus       178 ~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~------------~~~~~pdGia-vD~~GnlyVa~~  244 (314)
T d1pjxa_         178 AVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPG------------THEGGADGMD-FDEDNNLLVANW  244 (314)
T ss_dssp             EEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCC------------CSSCEEEEEE-EBTTCCEEEEEE
T ss_pred             EECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccc------------cccccceeeE-EecCCcEEEEEc
Confidence            9988764     999999999999987   333321  1111000            0123588998 799999999999


Q ss_pred             CCCeEEEEEcCCCce-E-eecCCCCcceEEEE
Q 014345          157 GNRAIREIQLHFDDC-A-YQYGSSFPLGIAVL  186 (426)
Q Consensus       157 gN~rIr~I~l~~~~~-~-~~~~~g~P~GIAv~  186 (426)
                      ++++|++|++++... . .......|.++|+.
T Consensus       245 ~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg  276 (314)
T d1pjxa_         245 GSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFK  276 (314)
T ss_dssp             TTTEEEEECTTCBSCSEEEECSSSCEEEEEEC
T ss_pred             CCCEEEEEeCCCCEEEEEEECCCCCEEEEEEe
Confidence            999999999886432 2 23334567777773

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.28  E-value=8.3e-11  Score=112.61  Aligned_cols=151  Identities=15%  Similarity=0.212  Sum_probs=103.6

Q ss_pred             CceEEEEcCCCcEEEEECC----CCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEE
Q 014345           22 EPYSVEVLPGGELLILDSA----NSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIA   97 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~----n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVA   97 (426)
                      .|+||++++||+|||++..    ...|++++..+.   .+..++...             ..+..|++++++++|+|||+
T Consensus        83 ~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~---~~~~~~~~~-------------~~~~~~nd~~~d~~G~l~vt  146 (319)
T d2dg1a1          83 NPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGD---NLQDIIEDL-------------STAYCIDDMVFDSKGGFYFT  146 (319)
T ss_dssp             SEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSC---SCEEEECSS-------------SSCCCEEEEEECTTSCEEEE
T ss_pred             CeeEEEECCCCCEEEEecCCCccceeEEEEcCCCc---eeeeeccCC-------------CcccCCcceeEEeccceeec
Confidence            7999999999999999864    456888888753   344444221             12567999999999999999


Q ss_pred             ECCCC------EEEEEc-CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCC-eEEEEECCCCeEEEEEcCC
Q 014345           98 DTMNM------AIRKIS-DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSC-SLLVIDRGNRAIREIQLHF  168 (426)
Q Consensus        98 Dt~N~------rIrk~d-~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G-~LYVaDsgN~rIr~I~l~~  168 (426)
                      |..+.      .|.+++ +++ +..+..                 .+..|++|+ +++++ .|||+|+.+++|++++++.
T Consensus       147 d~~~~~~~~~g~v~~~~~dg~~~~~~~~-----------------~~~~pnGia-~s~dg~~lyvad~~~~~I~~~d~~~  208 (319)
T d2dg1a1         147 DFRGYSTNPLGGVYYVSPDFRTVTPIIQ-----------------NISVANGIA-LSTDEKVLWVTETTANRLHRIALED  208 (319)
T ss_dssp             ECCCBTTBCCEEEEEECTTSCCEEEEEE-----------------EESSEEEEE-ECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             ccccccccCcceeEEEecccceeEEEee-----------------ccceeeeee-eccccceEEEecccCCceEEEEEcC
Confidence            97643      477777 444 444432                 255799999 56666 6999999999999999865


Q ss_pred             CceE----------eecCCCCcceEEEEecCCceEEEEEEEecccceeeecc
Q 014345          169 DDCA----------YQYGSSFPLGIAVLLAAGFFGYMLALLQRRVGTIVSSQ  210 (426)
Q Consensus       169 ~~~~----------~~~~~g~P~GIAv~~g~g~~Gy~~a~lq~~~g~~~~s~  210 (426)
                      +...          .......|.|+|++..    |.+|......-.+..++.
T Consensus       209 ~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~----G~l~Va~~~~g~V~~~~p  256 (319)
T d2dg1a1         209 DGVTIQPFGATIPYYFTGHEGPDSCCIDSD----DNLYVAMYGQGRVLVFNK  256 (319)
T ss_dssp             TSSSEEEEEEEEEEECCSSSEEEEEEEBTT----CCEEEEEETTTEEEEECT
T ss_pred             CCceeccccceeeeccCCccceeeeeEcCC----CCEEEEEcCCCEEEEECC
Confidence            3211          1223356999999944    455554433333444443

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.24  E-value=2.6e-10  Score=107.40  Aligned_cols=146  Identities=17%  Similarity=0.234  Sum_probs=108.0

Q ss_pred             CCcEEEEEecCCCCCCCceEEEEcC-CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcc
Q 014345            6 SGYTVETVFDGSKLGIEPYSVEVLP-GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPK   84 (426)
Q Consensus         6 ~G~tv~tv~~g~~l~~~P~GIaVd~-dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~   84 (426)
                      +|...+++... ++. .|.|||+|. .++||++|...++|.+++.+|..   ..+++..               .+..|.
T Consensus        66 ~g~~~~~v~~~-~~~-~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~---~~~l~~~---------------~l~~p~  125 (263)
T d1npea_          66 HGGEPTTIIRQ-DLG-SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ---RRVLFDT---------------GLVNPR  125 (263)
T ss_dssp             SSCCCEEEECT-TCC-CEEEEEEETTTTEEEEEETTTTEEEEEETTSCS---CEEEECS---------------SCSSEE
T ss_pred             ccCCcEEEEEe-ccc-cccEEEEeccCCeEEEeccCCCEEEEEecCCce---EEEEecc---------------cccCCc
Confidence            34444555433 223 799999997 77899999999999999998642   3444322               167899


Q ss_pred             eEEEcC-CCCEEEEECCC--CEEEEEc-CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCC
Q 014345           85 GLTVDD-RGNIYIADTMN--MAIRKIS-DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNR  159 (426)
Q Consensus        85 GIaVd~-dG~LYVADt~N--~rIrk~d-~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~  159 (426)
                      +|++|+ .|.||++|.+.  .+|.+++ +|. ..++...                .+..|.+|++...++.||++|.+.+
T Consensus       126 ~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~----------------~~~~P~glaiD~~~~~lYw~d~~~~  189 (263)
T d1npea_         126 GIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQD----------------NLGLPNGLTFDAFSSQLCWVDAGTH  189 (263)
T ss_dssp             EEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECT----------------TCSCEEEEEEETTTTEEEEEETTTT
T ss_pred             EEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeee----------------cccccceEEEeecCcEEEEEeCCCC
Confidence            999997 57899999863  4688888 655 3444321                2567999996556779999999999


Q ss_pred             eEEEEEcCCCceE-eecCCCCcceEEEEe
Q 014345          160 AIREIQLHFDDCA-YQYGSSFPLGIAVLL  187 (426)
Q Consensus       160 rIr~I~l~~~~~~-~~~~~g~P~GIAv~~  187 (426)
                      +|.++++++..+. ...+...|.|||+..
T Consensus       190 ~I~~~~~~g~~~~~v~~~~~~P~~lav~~  218 (263)
T d1npea_         190 RAECLNPAQPGRRKVLEGLQYPFAVTSYG  218 (263)
T ss_dssp             EEEEEETTEEEEEEEEECCCSEEEEEEET
T ss_pred             EEEEEECCCCCeEEEECCCCCcEEEEEEC
Confidence            9999999886654 345566799999973

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=2.3e-10  Score=107.71  Aligned_cols=132  Identities=16%  Similarity=0.117  Sum_probs=100.9

Q ss_pred             CceEEEEcC-CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcC-CCCEEEEEC
Q 014345           22 EPYSVEVLP-GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD-RGNIYIADT   99 (426)
Q Consensus        22 ~P~GIaVd~-dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~-dG~LYVADt   99 (426)
                      .|.|||+|. .++||++|..+++|.+++.+|..   ...+...               .+..|.+|++|+ .|.||++|.
T Consensus        78 ~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~---~~~~~~~---------------~~~~P~~l~vd~~~g~ly~~~~  139 (266)
T d1ijqa1          78 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK---RKTLFRE---------------NGSKPRAIVVDPVHGFMYWTDW  139 (266)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSSS---EEEEEEC---------------TTCCEEEEEEETTTTEEEEEEC
T ss_pred             CcceEEEeeccceEEEEecCCCEEEeEecCCce---EEEEEcC---------------CCCCcceEEEEcccCeEEEecc
Confidence            799999997 67899999999999999998643   2222211               266899999998 689999998


Q ss_pred             CC-CEEEEEc-CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceEee--
Q 014345          100 MN-MAIRKIS-DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQ--  174 (426)
Q Consensus       100 ~N-~rIrk~d-~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~~~~--  174 (426)
                      +. .+|.+.+ +|. ..++...                .+..|.+|++....+.||++|...++|.++++++..+...  
T Consensus       140 ~~~~~I~r~~~dGs~~~~l~~~----------------~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~  203 (266)
T d1ijqa1         140 GTPAKIKKGGLNGVDIYSLVTE----------------NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILE  203 (266)
T ss_dssp             SSSCEEEEEETTSCCEEEEECS----------------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEE
T ss_pred             CCCcceeEeccCCCceeccccc----------------ccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEe
Confidence            64 5899998 666 4555431                2557999995445778999999999999999998765432  


Q ss_pred             c--CCCCcceEEEEe
Q 014345          175 Y--GSSFPLGIAVLL  187 (426)
Q Consensus       175 ~--~~g~P~GIAv~~  187 (426)
                      .  ....|.+||+..
T Consensus       204 ~~~~~~~p~~lav~~  218 (266)
T d1ijqa1         204 DEKRLAHPFSLAVFE  218 (266)
T ss_dssp             CTTTTSSEEEEEEET
T ss_pred             CCCcccccEEEEEEC
Confidence            2  234688999884

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=6e-10  Score=104.75  Aligned_cols=132  Identities=18%  Similarity=0.205  Sum_probs=98.5

Q ss_pred             CCceEEEEcC-CCcEEEEECCC-CeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCC-CCEEEE
Q 014345           21 IEPYSVEVLP-GGELLILDSAN-SNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDR-GNIYIA   97 (426)
Q Consensus        21 ~~P~GIaVd~-dG~LYVaD~~n-~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~d-G~LYVA   97 (426)
                      ..|.+|++|+ +|.||++|.+. .+|.+.+.+|+   ....++..               .+..|+||++|.. +.||++
T Consensus       120 ~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs---~~~~l~~~---------------~~~~p~gl~iD~~~~~lYw~  181 (266)
T d1ijqa1         120 SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV---DIYSLVTE---------------NIQWPNGITLDLLSGRLYWV  181 (266)
T ss_dssp             CCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC---CEEEEECS---------------SCSCEEEEEEETTTTEEEEE
T ss_pred             CCcceEEEEcccCeEEEeccCCCcceeEeccCCC---ceeccccc---------------ccceeeEEEeeccccEEEEe
Confidence            3799999998 78899999765 58999999974   23444432               1667999999975 569999


Q ss_pred             ECCCCEEEEEc-CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCC-ceE-e
Q 014345           98 DTMNMAIRKIS-DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFD-DCA-Y  173 (426)
Q Consensus        98 Dt~N~rIrk~d-~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~-~~~-~  173 (426)
                      |..+++|..++ +|. ..++....              ..+..|.+|++ + ++.||++|..+++|.+++.... ... .
T Consensus       182 d~~~~~I~~~~~dG~~~~~~~~~~--------------~~~~~p~~lav-~-~~~ly~td~~~~~I~~~~~~~g~~~~~~  245 (266)
T d1ijqa1         182 DSKLHSISSIDVNGGNRKTILEDE--------------KRLAHPFSLAV-F-EDKVFWTDIINEAIFSANRLTGSDVNLL  245 (266)
T ss_dssp             ETTTTEEEEEETTSCSCEEEEECT--------------TTTSSEEEEEE-E-TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred             cCCcCEEEEEECCCCCEEEEEeCC--------------CcccccEEEEE-E-CCEEEEEECCCCeEEEEECCCCcceEEE
Confidence            99999999999 665 44443321              13567999994 5 5899999999999999997653 232 3


Q ss_pred             ecCCCCcceEEEE
Q 014345          174 QYGSSFPLGIAVL  186 (426)
Q Consensus       174 ~~~~g~P~GIAv~  186 (426)
                      ......|.+|.+.
T Consensus       246 ~~~~~~p~~i~v~  258 (266)
T d1ijqa1         246 AENLLSPEDMVLF  258 (266)
T ss_dssp             ECSCSCCCCEEEE
T ss_pred             EcCCCCceEEEEE
Confidence            3455667787765

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.20  E-value=2.7e-10  Score=107.24  Aligned_cols=131  Identities=15%  Similarity=0.185  Sum_probs=98.5

Q ss_pred             CCceEEEEcC-CCcEEEEECCC--CeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCC-CCEEE
Q 014345           21 IEPYSVEVLP-GGELLILDSAN--SNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDR-GNIYI   96 (426)
Q Consensus        21 ~~P~GIaVd~-dG~LYVaD~~n--~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~d-G~LYV   96 (426)
                      ..|.+|++|+ .|.||+++.+.  .+|.+.+.+|.   ....++..               .+..|.|||+|.. +.||+
T Consensus       122 ~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~---~~~~i~~~---------------~~~~P~glaiD~~~~~lYw  183 (263)
T d1npea_         122 VNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT---NRRILAQD---------------NLGLPNGLTFDAFSSQLCW  183 (263)
T ss_dssp             SSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC---CCEEEECT---------------TCSCEEEEEEETTTTEEEE
T ss_pred             cCCcEEEEecccCcEEEeecCCCCcEEEEecCCCC---Cceeeeee---------------cccccceEEEeecCcEEEE
Confidence            3799999998 67899999754  47999999863   22333321               1667999999965 56999


Q ss_pred             EECCCCEEEEEc-CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceE-e
Q 014345           97 ADTMNMAIRKIS-DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCA-Y  173 (426)
Q Consensus        97 ADt~N~rIrk~d-~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~~-~  173 (426)
                      +|...++|..++ +|. ..+++.                 .+..|.+|++ + ++.||++|+++++|.+++..+.... .
T Consensus       184 ~d~~~~~I~~~~~~g~~~~~v~~-----------------~~~~P~~lav-~-~~~lYwtd~~~~~I~~~~~~~g~~~~~  244 (263)
T d1npea_         184 VDAGTHRAECLNPAQPGRRKVLE-----------------GLQYPFAVTS-Y-GKNLYYTDWKTNSVIAMDLAISKEMDT  244 (263)
T ss_dssp             EETTTTEEEEEETTEEEEEEEEE-----------------CCCSEEEEEE-E-TTEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             EeCCCCEEEEEECCCCCeEEEEC-----------------CCCCcEEEEE-E-CCEEEEEECCCCEEEEEECCCCccceE
Confidence            999999999999 555 455542                 1446999994 4 6899999999999999999865432 2


Q ss_pred             e--cCCCCcceEEEEec
Q 014345          174 Q--YGSSFPLGIAVLLA  188 (426)
Q Consensus       174 ~--~~~g~P~GIAv~~g  188 (426)
                      .  .....|.||++.-.
T Consensus       245 ~~~~~~~~~~gi~v~~~  261 (263)
T d1npea_         245 FHPHKQTRLYGITIALS  261 (263)
T ss_dssp             ECCSSCCCCCCEEEECS
T ss_pred             ECCCCCCCcceEEEeCC
Confidence            2  44467889998743

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.20  E-value=1.2e-10  Score=109.80  Aligned_cols=114  Identities=16%  Similarity=0.100  Sum_probs=90.3

Q ss_pred             CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCC
Q 014345           22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN  101 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N  101 (426)
                      .|.+||+++||+|||+|..+++|++++++|    ....++..                -..|.||+++++|+|||++..+
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g----~~~~~~~~----------------~~~~~gla~~~dG~l~v~~~~~   88 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDG----NQQIHATV----------------EGKVSGLAFTSNGDLVATGWNA   88 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTC----CEEEEEEC----------------SSEEEEEEECTTSCEEEEEECT
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCC----CEEEEEcC----------------CCCcceEEEcCCCCeEEEecCC
Confidence            589999999999999999999999999985    34444432                1248999999999999999988


Q ss_pred             CEEEEEc----CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCce
Q 014345          102 MAIRKIS----DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDC  171 (426)
Q Consensus       102 ~rIrk~d----~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~  171 (426)
                      +.+.+++    .+....++...               ....|++++ +++++++||+|..+++|.++++.....
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~n~i~-~~~~g~~~v~~~~~~~i~~~~~~~~~~  146 (302)
T d2p4oa1          89 DSIPVVSLVKSDGTVETLLTLP---------------DAIFLNGIT-PLSDTQYLTADSYRGAIWLIDVVQPSG  146 (302)
T ss_dssp             TSCEEEEEECTTSCEEEEEECT---------------TCSCEEEEE-ESSSSEEEEEETTTTEEEEEETTTTEE
T ss_pred             ceEEEEEecccccceeeccccC---------------CccccceeE-EccCCCEEeeccccccceeeeccCCcc
Confidence            8887776    23345554321               123588998 799999999999999999999887543

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.09  E-value=1.3e-09  Score=102.45  Aligned_cols=161  Identities=11%  Similarity=-0.022  Sum_probs=110.8

Q ss_pred             eeecCCcEEEEEecCCCCCCCceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccC
Q 014345            2 MKFESGYTVETVFDGSKLGIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMN   81 (426)
Q Consensus         2 vk~~~G~tv~tv~~g~~l~~~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln   81 (426)
                      .++..+...+.+.....   .|.+|++++||+|||++..++.|.+++..+.. +....++...              ...
T Consensus        52 ~~i~p~g~~~~~~~~~~---~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~--------------~~~  113 (302)
T d2p4oa1          52 VSITPDGNQQIHATVEG---KVSGLAFTSNGDLVATGWNADSIPVVSLVKSD-GTVETLLTLP--------------DAI  113 (302)
T ss_dssp             EEECTTCCEEEEEECSS---EEEEEEECTTSCEEEEEECTTSCEEEEEECTT-SCEEEEEECT--------------TCS
T ss_pred             EEEeCCCCEEEEEcCCC---CcceEEEcCCCCeEEEecCCceEEEEEecccc-cceeeccccC--------------Ccc
Confidence            34555445555555333   79999999999999999999988888765432 4445554332              134


Q ss_pred             CcceEEEcCCCCEEEEECCCCEEEEEc-CCCcEEE-eCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCC
Q 014345           82 HPKGLTVDDRGNIYIADTMNMAIRKIS-DSGVTTI-AGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNR  159 (426)
Q Consensus        82 ~P~GIaVd~dG~LYVADt~N~rIrk~d-~g~VstI-aGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~  159 (426)
                      .|++++++++|++||+|..+.+|++++ .++...+ ........      ......+..|.+|++ + .+.||++++.++
T Consensus       114 ~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~ngi~~-~-~~~l~~~~~~~~  185 (302)
T d2p4oa1         114 FLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLAR------SNSESVFPAANGLKR-F-GNFLYVSNTEKM  185 (302)
T ss_dssp             CEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSC------SSTTCCSCSEEEEEE-E-TTEEEEEETTTT
T ss_pred             ccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccce------eeccCcccccccccc-c-CCceeeecCCCC
Confidence            589999999999999999999999999 4443332 22211110      112234567888874 3 579999999999


Q ss_pred             eEEEEEcCCCceE----eecCCCCcceEEEEec
Q 014345          160 AIREIQLHFDDCA----YQYGSSFPLGIAVLLA  188 (426)
Q Consensus       160 rIr~I~l~~~~~~----~~~~~g~P~GIAv~~g  188 (426)
                      +|++++.......    .......|.||+++..
T Consensus       186 ~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~d  218 (302)
T d2p4oa1         186 LLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVE  218 (302)
T ss_dssp             EEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTT
T ss_pred             eEEeccccccccccccccccCCCCCcceEECCC
Confidence            9999998764322    2234567999999854

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.81  E-value=5.8e-08  Score=91.74  Aligned_cols=152  Identities=11%  Similarity=0.041  Sum_probs=103.5

Q ss_pred             CCceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECC
Q 014345           21 IEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTM  100 (426)
Q Consensus        21 ~~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~  100 (426)
                      ..|.+++.+++|.|||+.  .+.|.+++.++   ++++.++....+           ...+.|+++++|++|+|||++..
T Consensus        59 ~~~~~i~~~~dg~l~va~--~~gl~~~d~~t---g~~~~l~~~~~~-----------~~~~~~nd~~vd~~G~iw~~~~~  122 (295)
T d2ghsa1          59 FMGSALAKISDSKQLIAS--DDGLFLRDTAT---GVLTLHAELESD-----------LPGNRSNDGRMHPSGALWIGTMG  122 (295)
T ss_dssp             SCEEEEEEEETTEEEEEE--TTEEEEEETTT---CCEEEEECSSTT-----------CTTEEEEEEEECTTSCEEEEEEE
T ss_pred             CCcEEEEEecCCCEEEEE--eCccEEeeccc---ceeeEEeeeecC-----------CCcccceeeEECCCCCEEEEecc
Confidence            368899999999999996  46899999885   456666543211           23567999999999999999853


Q ss_pred             ------CCEEEEEcCCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceE--
Q 014345          101 ------NMAIRKISDSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCA--  172 (426)
Q Consensus       101 ------N~rIrk~d~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~~--  172 (426)
                            ...+..+.++.+..+..                 .+..|+++++..+...||++|+.+++|++++.+.....  
T Consensus       123 ~~~~~~~g~l~~~~~g~~~~~~~-----------------~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~  185 (295)
T d2ghsa1         123 RKAETGAGSIYHVAKGKVTKLFA-----------------DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPT  185 (295)
T ss_dssp             TTCCTTCEEEEEEETTEEEEEEE-----------------EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBS
T ss_pred             ccccccceeEeeecCCcEEEEee-----------------ccCCcceeeecCCCceEEEeecccceeeEeeecccccccc
Confidence                  23455556666555543                 24568999965555579999999999999997643221  


Q ss_pred             -----e---ecCCCCcceEEEEecCCceEEEEEEEecccceeeec
Q 014345          173 -----Y---QYGSSFPLGIAVLLAAGFFGYMLALLQRRVGTIVSS  209 (426)
Q Consensus       173 -----~---~~~~g~P~GIAv~~g~g~~Gy~~a~lq~~~g~~~~s  209 (426)
                           .   ....+.|.|++++..    |++|...-..-+...++
T Consensus       186 ~~~~~~~~~~~~~g~pdG~~vD~~----GnlWva~~~~g~V~~~d  226 (295)
T d2ghsa1         186 GKAEVFIDSTGIKGGMDGSVCDAE----GHIWNARWGEGAVDRYD  226 (295)
T ss_dssp             SCCEEEEECTTSSSEEEEEEECTT----SCEEEEEETTTEEEEEC
T ss_pred             cceEEEeccCcccccccceEEcCC----CCEEeeeeCCCceEEec
Confidence                 1   123467999999844    55664433333344443

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.80  E-value=4.1e-08  Score=92.82  Aligned_cols=139  Identities=14%  Similarity=0.122  Sum_probs=92.4

Q ss_pred             CCCceEEEEcCCCcEEEEECC------CCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCC
Q 014345           20 GIEPYSVEVLPGGELLILDSA------NSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN   93 (426)
Q Consensus        20 ~~~P~GIaVd~dG~LYVaD~~------n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~   93 (426)
                      .+.|+++++|++|+||+++..      .+.++++..     +.+..+..                .+..|+|++++++++
T Consensus       102 ~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~-----g~~~~~~~----------------~~~~~Ng~~~s~d~~  160 (295)
T d2ghsa1         102 GNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAK-----GKVTKLFA----------------DISIPNSICFSPDGT  160 (295)
T ss_dssp             TEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEET-----TEEEEEEE----------------EESSEEEEEECTTSC
T ss_pred             cccceeeEECCCCCEEEEeccccccccceeEeeecC-----CcEEEEee----------------ccCCcceeeecCCCc
Confidence            346999999999999999853      234555543     23333332                266799999999886


Q ss_pred             -EEEEECCCCEEEEEc-CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCce
Q 014345           94 -IYIADTMNMAIRKIS-DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDC  171 (426)
Q Consensus        94 -LYVADt~N~rIrk~d-~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~  171 (426)
                       +|++|+.+++|++++ +.....+.+.....    .+   .......|.+++ +|.+|+||||..++++|.++++++...
T Consensus       161 ~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~----~~---~~~~~g~pdG~~-vD~~GnlWva~~~~g~V~~~dp~G~~~  232 (295)
T d2ghsa1         161 TGYFVDTKVNRLMRVPLDARTGLPTGKAEVF----ID---STGIKGGMDGSV-CDAEGHIWNARWGEGAVDRYDTDGNHI  232 (295)
T ss_dssp             EEEEEETTTCEEEEEEBCTTTCCBSSCCEEE----EE---CTTSSSEEEEEE-ECTTSCEEEEEETTTEEEEECTTCCEE
T ss_pred             eEEEeecccceeeEeeecccccccccceEEE----ec---cCcccccccceE-EcCCCCEEeeeeCCCceEEecCCCcEe
Confidence             999999999999997 43221111110000    00   000123588998 799999999999999999999987654


Q ss_pred             Eee-cCCCCcceEEEEe
Q 014345          172 AYQ-YGSSFPLGIAVLL  187 (426)
Q Consensus       172 ~~~-~~~g~P~GIAv~~  187 (426)
                      ... .....|+.+|+..
T Consensus       233 ~~i~lP~~~~T~~~FGG  249 (295)
T d2ghsa1         233 ARYEVPGKQTTCPAFIG  249 (295)
T ss_dssp             EEEECSCSBEEEEEEES
T ss_pred             eEecCCCCceEEEEEeC
Confidence            332 2234566676653

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=98.03  E-value=2.5e-05  Score=75.42  Aligned_cols=145  Identities=11%  Similarity=0.063  Sum_probs=90.9

Q ss_pred             CCceEEEE--cCCCc--EEEEEC--CCCeEE--EEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCC
Q 014345           21 IEPYSVEV--LPGGE--LLILDS--ANSNLY--RISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRG   92 (426)
Q Consensus        21 ~~P~GIaV--d~dG~--LYVaD~--~n~rI~--kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG   92 (426)
                      ..|+||.+  +.+|.  |||...  .+.+|-  +++.++.   .+ +..+.-           ....+..|++|++..+|
T Consensus        97 f~PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~---~l-~~~~~v-----------~~~~~~~pNDv~~~~~g  161 (340)
T d1v04a_          97 FNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEK---SL-LHLKTI-----------RHKLLPSVNDIVAVGPE  161 (340)
T ss_dssp             CCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTT---EE-EEEEEE-----------CCTTCSSEEEEEEEETT
T ss_pred             eeccceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCC---eE-EEEeec-----------CCccccCccceEEecCC
Confidence            47999987  55665  778775  345554  4444421   22 222221           11247889999999999


Q ss_pred             CEEEEECC-----------------CCEEEEEcCCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEE
Q 014345           93 NIYIADTM-----------------NMAIRKISDSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVID  155 (426)
Q Consensus        93 ~LYVADt~-----------------N~rIrk~d~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD  155 (426)
                      .+|+++..                 ...+..++.+....++.                 .+..|+||++..+...|||++
T Consensus       162 ~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~~~~~-----------------~l~~pNGI~~s~d~~~lyVa~  224 (340)
T d1v04a_         162 HFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAE-----------------GFDFANGINISPDGKYVYIAE  224 (340)
T ss_dssp             EEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEEEEEE-----------------EESSEEEEEECTTSSEEEEEE
T ss_pred             CEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceEEEcC-----------------CCCccceeEECCCCCEEEEEe
Confidence            99999731                 12344444444444432                 356799999533445899999


Q ss_pred             CCCCeEEEEEcCCCceEe----ecCCCCcceEEEEecCCceEEEEEEEe
Q 014345          156 RGNRAIREIQLHFDDCAY----QYGSSFPLGIAVLLAAGFFGYMLALLQ  200 (426)
Q Consensus       156 sgN~rIr~I~l~~~~~~~----~~~~g~P~GIAv~~g~g~~Gy~~a~lq  200 (426)
                      +..++|+++++.......    ..-.+.|.+|.++...   |+.|....
T Consensus       225 t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~---g~lwva~~  270 (340)
T d1v04a_         225 LLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVT---GDLWVGCH  270 (340)
T ss_dssp             GGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTT---CCEEEEEE
T ss_pred             CCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCC---CEEEEEEC
Confidence            999999999987643221    2334668999997432   34555443

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.03  E-value=8.8e-05  Score=71.04  Aligned_cols=153  Identities=14%  Similarity=0.064  Sum_probs=90.8

Q ss_pred             CCceEEEEcCCCc-EEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCC-EEEEE
Q 014345           21 IEPYSVEVLPGGE-LLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIAD   98 (426)
Q Consensus        21 ~~P~GIaVd~dG~-LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~-LYVAD   98 (426)
                      ..|++++++|||. |||+|.+.++|++++.+..  +.+..+........           =..|++|+++++|+ +||+.
T Consensus       145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~--g~~~~~~~~~~~~~-----------g~gPr~i~f~pdg~~~yv~~  211 (365)
T d1jofa_         145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLAS--GEVELVGSVDAPDP-----------GDHPRWVAMHPTGNYLYALM  211 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTT--SCEEEEEEEECSST-----------TCCEEEEEECTTSSEEEEEE
T ss_pred             CcceEEEECCCCCEEEEeeCCCCEEEEEEccCC--CceeeccceeecCC-----------CCceEEEEECCCCceEEEec
Confidence            3689999999998 9999999999988864421  22222211100111           13599999999987 89999


Q ss_pred             CCCCEEEEEc-C-CCc---EEEeCCccCCCCCCC-CCCcccccCCCCCeeEEECCCC-eEEEEECCCCe-----EEEEEc
Q 014345           99 TMNMAIRKIS-D-SGV---TTIAGGKWGRGGGHV-DGPSEDAKFSNDFDVVYIGSSC-SLLVIDRGNRA-----IREIQL  166 (426)
Q Consensus        99 t~N~rIrk~d-~-g~V---stIaGg~~g~~~G~~-dG~~~~a~f~~P~gIa~vd~~G-~LYVaDsgN~r-----Ir~I~l  166 (426)
                      ...+.|..++ + +..   .++....... .+.. ...........+..|+ ++++| .||++.++.+.     |..++.
T Consensus       212 e~~~~V~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~-~spdG~~lyvsnr~~~~~~~~~i~~~~~  289 (365)
T d1jofa_         212 EAGNRICEYVIDPATHMPVYTHHSFPLIP-PGIPDRDPETGKGLYRADVCA-LTFSGKYMFASSRANKFELQGYIAGFKL  289 (365)
T ss_dssp             TTTTEEEEEEECTTTCCEEEEEEEEESSC-TTCCCBCTTTSSBSEEEEEEE-ECTTSSEEEEEEEESSTTSCCEEEEEEE
T ss_pred             cCCCEEEEEEecCCCceEEEEeeeecccc-ccccccccccccccCCccceE-ECCCCCEEEEEcccCCCccceEEEEEEe
Confidence            9999999887 3 322   2221110000 0000 0111222345677888 56666 68999886554     766665


Q ss_pred             CCCce-Ee-------ecCCCCcceEEEEec
Q 014345          167 HFDDC-AY-------QYGSSFPLGIAVLLA  188 (426)
Q Consensus       167 ~~~~~-~~-------~~~~g~P~GIAv~~g  188 (426)
                      ..... ..       ......|.+|++...
T Consensus       290 ~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~  319 (365)
T d1jofa_         290 RDCGSIEKQLFLSPTPTSGGHSNAVSPCPW  319 (365)
T ss_dssp             CTTSCEEEEEEEEECSSCCTTCCCEEECTT
T ss_pred             cCCCceeeEeEeeEEEcCCCCccEEEecCC
Confidence            54221 11       112346888988643

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=97.96  E-value=0.00019  Score=64.08  Aligned_cols=117  Identities=9%  Similarity=0.022  Sum_probs=78.4

Q ss_pred             CceEEEEcCCCc-EEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCC-EEEEEC
Q 014345           22 EPYSVEVLPGGE-LLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIADT   99 (426)
Q Consensus        22 ~P~GIaVd~dG~-LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~-LYVADt   99 (426)
                      .|.+|+++|||. |||+....++|..++.+..  .....+.+..             ..-..|.+|++++||+ ||+++.
T Consensus        38 ~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~--~~~~~~~~~~-------------~~~~~p~~l~~spDg~~l~v~~~  102 (333)
T d1ri6a_          38 QVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPD--DGALTFAAES-------------ALPGSLTHISTDHQGQFVFVGSY  102 (333)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEEECTT--TCCEEEEEEE-------------ECSSCCSEEEECTTSSEEEEEET
T ss_pred             CEeEEEEeCCCCEEEEEECCCCeEEEEEEeCC--CCcEEEeeec-------------ccCCCceEEEEcCCCCEEeeccc
Confidence            799999999998 8899988888887765422  1112222210             0123589999999997 999998


Q ss_pred             CCCEEEEEc--CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCC-eEEEEECCCCeEEEEEcCC
Q 014345          100 MNMAIRKIS--DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSC-SLLVIDRGNRAIREIQLHF  168 (426)
Q Consensus       100 ~N~rIrk~d--~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G-~LYVaDsgN~rIr~I~l~~  168 (426)
                      .+..|+.++  ............              .-..|+++++ ++++ .+++++....+|..++...
T Consensus       103 ~~~~v~~~~~~~~~~~~~~~~~~--------------~~~~~~~v~~-s~d~~~~~~~~~~~~~i~~~~~~~  159 (333)
T d1ri6a_         103 NAGNVSVTRLEDGLPVGVVDVVE--------------GLDGCHSANI-SPDNRTLWVPALKQDRICLFTVSD  159 (333)
T ss_dssp             TTTEEEEEEEETTEEEEEEEEEC--------------CCTTBCCCEE-CTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             CCCceeeeccccccceecccccC--------------CCccceEEEe-eecceeeeccccccceeeEEEecc
Confidence            888888877  333222211100              1124778874 5555 6899999999999988765

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=97.95  E-value=0.00033  Score=61.41  Aligned_cols=128  Identities=17%  Similarity=0.293  Sum_probs=84.5

Q ss_pred             CCceEEEEcCCCc-EEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCC-EEEEE
Q 014345           21 IEPYSVEVLPGGE-LLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIAD   98 (426)
Q Consensus        21 ~~P~GIaVd~dG~-LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~-LYVAD   98 (426)
                      ..|++|++++||. |||++..+++|..+|.....  .+..+..                 ...|.+++++++|. ++++.
T Consensus        32 ~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~--~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~   92 (301)
T d1l0qa2          32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNN--VIATVPA-----------------GSSPQGVAVSPDGKQVYVTN   92 (301)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTE--EEEEEEC-----------------SSSEEEEEECTTSSEEEEEE
T ss_pred             CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCc--eeeeeec-----------------cccccccccccccccccccc
Confidence            4799999999997 88999999999999987421  2222221                 12488999999887 77888


Q ss_pred             CCCCEEEEEc-C-CCc-EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCC-eEEEEECCCCeEEEEEcCCCceEe-
Q 014345           99 TMNMAIRKIS-D-SGV-TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSC-SLLVIDRGNRAIREIQLHFDDCAY-  173 (426)
Q Consensus        99 t~N~rIrk~d-~-g~V-stIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G-~LYVaDsgN~rIr~I~l~~~~~~~-  173 (426)
                      ..+..+..++ . +.. .++..                  ...|..+++ .+++ .++++...+..+..++.....+.. 
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~-~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (301)
T d1l0qa2          93 MASSTLSVIDTTSNTVAGTVKT------------------GKSPLGLAL-SPDGKKLYVTNNGDKTVSVINTVTKAVINT  153 (301)
T ss_dssp             TTTTEEEEEETTTTEEEEEEEC------------------SSSEEEEEE-CTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             cccceeeecccccceeeeeccc------------------cccceEEEe-ecCCCeeeeeeccccceeeeeccccceeee
Confidence            8888888888 3 332 33321                  123566664 4444 677788777888888877655432 


Q ss_pred             ecCCCCcceEEEE
Q 014345          174 QYGSSFPLGIAVL  186 (426)
Q Consensus       174 ~~~~g~P~GIAv~  186 (426)
                      ......|..++..
T Consensus       154 ~~~~~~~~~~~~~  166 (301)
T d1l0qa2         154 VSVGRSPKGIAVT  166 (301)
T ss_dssp             EECCSSEEEEEEC
T ss_pred             cccCCCceEEEee
Confidence            2233334444443

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=97.82  E-value=0.00046  Score=60.45  Aligned_cols=115  Identities=19%  Similarity=0.303  Sum_probs=77.7

Q ss_pred             EEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCC-EEEEECCCCEEEEEc--CC
Q 014345           34 LLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIADTMNMAIRKIS--DS  110 (426)
Q Consensus        34 LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~-LYVADt~N~rIrk~d--~g  110 (426)
                      +||++..++.|.++|.+.   +++...+..     |           ..|.+|+++++|+ |||++..+++|+++|  .+
T Consensus         4 ~yV~~~~~~~v~v~D~~t---~~~~~~i~~-----g-----------~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~   64 (301)
T d1l0qa2           4 AYIANSESDNISVIDVTS---NKVTATIPV-----G-----------SNPMGAVISPDGTKVYVANAHSNDVSIIDTATN   64 (301)
T ss_dssp             EEEEETTTTEEEEEETTT---TEEEEEEEC-----S-----------SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTT
T ss_pred             EEEEECCCCEEEEEECCC---CeEEEEEEC-----C-----------CCceEEEEeCCCCEEEEEECCCCEEEEEECCCC
Confidence            799999999999999874   222222111     0           2489999999997 889999999999999  33


Q ss_pred             C-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceEe-ecCCCCcceEEE
Q 014345          111 G-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAY-QYGSSFPLGIAV  185 (426)
Q Consensus       111 ~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~~~-~~~~g~P~GIAv  185 (426)
                      . +.++...                  ..|.++++..+...++++...+..+..++.....+.. ......|..+++
T Consensus        65 ~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (301)
T d1l0qa2          65 NVIATVPAG------------------SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLAL  123 (301)
T ss_dssp             EEEEEEECS------------------SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEE
T ss_pred             ceeeeeecc------------------ccccccccccccccccccccccceeeecccccceeeeeccccccceEEEe
Confidence            3 3444321                  1477888544444688899889999999887655433 233333444443

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=97.79  E-value=0.00023  Score=70.85  Aligned_cols=51  Identities=12%  Similarity=0.263  Sum_probs=41.3

Q ss_pred             CCcEEEEEecCCCCCCCceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEec
Q 014345            6 SGYTVETVFDGSKLGIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAG   62 (426)
Q Consensus         6 ~G~tv~tv~~g~~l~~~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG   62 (426)
                      +++.+++++++..   .|.+|++.+||+|||++...++|++++.++   +....+.+
T Consensus        15 ~~f~~~~ia~~L~---~P~~la~~pdg~llVter~~G~i~~v~~~~---g~~~~i~~   65 (450)
T d1crua_          15 ENFDKKVILSNLN---KPHALLWGPDNQIWLTERATGKILRVNPES---GSVKTVFQ   65 (450)
T ss_dssp             TTSCEEEEECCCS---SEEEEEECTTSCEEEEETTTCEEEEECTTT---CCEEEEEE
T ss_pred             CCcEEEEEECCCC---CceEEEEeCCCeEEEEEecCCEEEEEECCC---CcEeeccc
Confidence            5788999988644   899999999999999998889999998764   34444444

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=97.70  E-value=0.00039  Score=66.38  Aligned_cols=141  Identities=11%  Similarity=-0.051  Sum_probs=82.7

Q ss_pred             CCCceEEEEcCCCc-EEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccc-cCCcccccccCCcceEEEcCCCC-EEE
Q 014345           20 GIEPYSVEVLPGGE-LLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGH-VDGKPREARMNHPKGLTVDDRGN-IYI   96 (426)
Q Consensus        20 ~~~P~GIaVd~dG~-LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~-~dG~a~~A~Ln~P~GIaVd~dG~-LYV   96 (426)
                      +..|.+++++++|. +||+....+.|..++.+......+..+.....-..+. ............|..|+++++|+ ||+
T Consensus       192 g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyv  271 (365)
T d1jofa_         192 GDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFA  271 (365)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEE
T ss_pred             CCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEE
Confidence            56899999999997 8999999999998887643211111211110000000 00011112244578899999997 899


Q ss_pred             EECCCCE-----EEEEc---CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCC-eEEEEECCCCeEEEEEcC
Q 014345           97 ADTMNMA-----IRKIS---DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSC-SLLVIDRGNRAIREIQLH  167 (426)
Q Consensus        97 ADt~N~r-----Irk~d---~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G-~LYVaDsgN~rIr~I~l~  167 (426)
                      +.++++.     |..++   .+.+.........           ...-.+|.+|++.+.+| .|||++...+.|.+++.+
T Consensus       272 snr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~-----------~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~  340 (365)
T d1jofa_         272 SSRANKFELQGYIAGFKLRDCGSIEKQLFLSPT-----------PTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWK  340 (365)
T ss_dssp             EEEESSTTSCCEEEEEEECTTSCEEEEEEEEEC-----------SSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEE
T ss_pred             EcccCCCccceEEEEEEecCCCceeeEeEeeEE-----------EcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEe
Confidence            9765332     55554   3334322210000           00123689999533355 699999999999999876


Q ss_pred             CCce
Q 014345          168 FDDC  171 (426)
Q Consensus       168 ~~~~  171 (426)
                      .+..
T Consensus       341 ~~~l  344 (365)
T d1jofa_         341 DEFL  344 (365)
T ss_dssp             TTEE
T ss_pred             CCcC
Confidence            5543

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.59  E-value=0.00018  Score=69.26  Aligned_cols=99  Identities=14%  Similarity=0.120  Sum_probs=65.7

Q ss_pred             CCCceEEEEcCCCcEEEEEC-----------------CCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCC
Q 014345           20 GIEPYSVEVLPGGELLILDS-----------------ANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNH   82 (426)
Q Consensus        20 ~~~P~GIaVd~dG~LYVaD~-----------------~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~   82 (426)
                      ...|++|++..+|.+|+++.                 ..+.|+.++..     ..+.++.                .|..
T Consensus       149 ~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~-----~~~~~~~----------------~l~~  207 (340)
T d1v04a_         149 LPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN-----DVRVVAE----------------GFDF  207 (340)
T ss_dssp             CSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSS-----CEEEEEE----------------EESS
T ss_pred             ccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCC-----ceEEEcC----------------CCCc
Confidence            34799999999999999963                 22345555442     2333332                2677


Q ss_pred             cceEEEcCCCC-EEEEECCCCEEEEEc-C--CCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEEC-CCCeEEEEE
Q 014345           83 PKGLTVDDRGN-IYIADTMNMAIRKIS-D--SGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIG-SSCSLLVID  155 (426)
Q Consensus        83 P~GIaVd~dG~-LYVADt~N~rIrk~d-~--g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd-~~G~LYVaD  155 (426)
                      |+||+++++++ ||||++...+|++++ +  +......--..               -..|-.|. +| .+|.+|++-
T Consensus       208 pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l---------------~~~pDNi~-~d~~~g~lwva~  269 (340)
T d1v04a_         208 ANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSF---------------DTLVDNIS-VDPVTGDLWVGC  269 (340)
T ss_dssp             EEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEC---------------SSEEEEEE-ECTTTCCEEEEE
T ss_pred             cceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecC---------------CCCCCccE-EecCCCEEEEEE
Confidence            99999999874 999999999999988 3  22222211000               01366777 56 478899985

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=97.58  E-value=0.00065  Score=60.53  Aligned_cols=122  Identities=7%  Similarity=-0.038  Sum_probs=78.8

Q ss_pred             cEEEEECCCCeEEEEeCCCCcccccEEE--ecCCCCcccccCCcccccccCCcceEEEcCCCC-EEEEECCCCEEEEEc-
Q 014345           33 ELLILDSANSNLYRISSSLSLYSRPKLV--AGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIADTMNMAIRKIS-  108 (426)
Q Consensus        33 ~LYVaD~~n~rI~kid~dg~~~g~v~~v--aG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~-LYVADt~N~rIrk~d-  108 (426)
                      .|||+....++|..++.+..  +.+..+  ...                -..|.+|++++||+ |||+...+++|++++ 
T Consensus         5 ~v~v~~~~~~~I~v~~~~~~--~~l~~~~~~~~----------------~~~v~~la~spDG~~L~v~~~~d~~i~~~~i   66 (333)
T d1ri6a_           5 TVYIASPESQQIHVWNLNHE--GALTLTQVVDV----------------PGQVQPMVVSPDKRYLYVGVRPEFRVLAYRI   66 (333)
T ss_dssp             EEEEEEGGGTEEEEEEECTT--SCEEEEEEEEC----------------SSCCCCEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             EEEEECCCCCcEEEEEEcCC--CCeEEEEEEcC----------------CCCEeEEEEeCCCCEEEEEECCCCeEEEEEE
Confidence            48999999999999986532  222222  121                12488999999997 889999889998876 


Q ss_pred             -CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCC-eEEEEECCCCeEEEEEcCCCceE----eecCCCCcc
Q 014345          109 -DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSC-SLLVIDRGNRAIREIQLHFDDCA----YQYGSSFPL  181 (426)
Q Consensus       109 -~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G-~LYVaDsgN~rIr~I~l~~~~~~----~~~~~g~P~  181 (426)
                       .+. ..++.+...              .-..|.+|+ ++++| .||+++.++..|..+........    .......|.
T Consensus        67 ~~~~~~~~~~~~~~--------------~~~~p~~l~-~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  131 (333)
T d1ri6a_          67 APDDGALTFAAESA--------------LPGSLTHIS-TDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCH  131 (333)
T ss_dssp             CTTTCCEEEEEEEE--------------CSSCCSEEE-ECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBC
T ss_pred             eCCCCcEEEeeecc--------------cCCCceEEE-EcCCCCEEeecccCCCceeeeccccccceecccccCCCccce
Confidence             222 333332110              113588998 56666 69999999999988887654322    122334466


Q ss_pred             eEEEEe
Q 014345          182 GIAVLL  187 (426)
Q Consensus       182 GIAv~~  187 (426)
                      ++++..
T Consensus       132 ~v~~s~  137 (333)
T d1ri6a_         132 SANISP  137 (333)
T ss_dssp             CCEECT
T ss_pred             EEEeee
Confidence            665543

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=97.37  E-value=0.00079  Score=59.78  Aligned_cols=114  Identities=9%  Similarity=0.005  Sum_probs=73.7

Q ss_pred             EEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCC-EEEEECCCCE
Q 014345           25 SVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIADTMNMA  103 (426)
Q Consensus        25 GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~-LYVADt~N~r  103 (426)
                      |+|++++|+++++-...+.|..+|....   ++...+-.+       .       -..|.+|++++||. |||++..+++
T Consensus         1 g~a~~~~~~~l~~~~~~~~v~v~D~~t~---~~~~t~~~~-------~-------~~~p~~l~~spDG~~l~v~~~~~~~   63 (346)
T d1jmxb_           1 GPALKAGHEYMIVTNYPNNLHVVDVASD---TVYKSCVMP-------D-------KFGPGTAMMAPDNRTAYVLNNHYGD   63 (346)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTT---EEEEEEECS-------S-------CCSSCEEEECTTSSEEEEEETTTTE
T ss_pred             CccCCCCCcEEEEEcCCCEEEEEECCCC---CEEEEEEcC-------C-------CCCcceEEECCCCCEEEEEECCCCc
Confidence            4688889998887777889999999852   322211110       0       11489999999987 7899999999


Q ss_pred             EEEEc--CCCc-EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCC-eEEEEEC-----------CCCeEEEEEcC
Q 014345          104 IRKIS--DSGV-TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSC-SLLVIDR-----------GNRAIREIQLH  167 (426)
Q Consensus       104 Irk~d--~g~V-stIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G-~LYVaDs-----------gN~rIr~I~l~  167 (426)
                      |..+|  .+.+ .++.....           .......|.++++ .++| .|||++.           ....|..++..
T Consensus        64 v~~~d~~t~~~~~~~~~~~~-----------~~~~~~~~~~v~~-s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~  130 (346)
T d1jmxb_          64 IYGIDLDTCKNTFHANLSSV-----------PGEVGRSMYSFAI-SPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTA  130 (346)
T ss_dssp             EEEEETTTTEEEEEEESCCS-----------TTEEEECSSCEEE-CTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGG
T ss_pred             EEEEeCccCeeeeeeccccc-----------ccccCCceEEEEE-ecCCCEEEEEecCCcceeeeeccCcceEEEEecc
Confidence            99999  3332 33332111           1112346889985 5555 6888864           34556666554

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.09  E-value=0.012  Score=51.56  Aligned_cols=130  Identities=12%  Similarity=0.087  Sum_probs=74.9

Q ss_pred             cCCcEEEEEecCCCCCCCceEEEEcCCCc-EEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCc
Q 014345            5 ESGYTVETVFDGSKLGIEPYSVEVLPGGE-LLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHP   83 (426)
Q Consensus         5 ~~G~tv~tv~~g~~l~~~P~GIaVd~dG~-LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P   83 (426)
                      +.+..+.++ .....+..|.+|++++||. |||+...++.|.++|...   +++....... .         .......|
T Consensus        19 ~s~~~~~~i-~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t---~~~~~~~~~~-~---------~~~~~~~~   84 (337)
T d1pbyb_          19 EKMAVDKVI-TIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVT---GETLGRIDLS-T---------PEERVKSL   84 (337)
T ss_dssp             TTTEEEEEE-ECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTT---CCEEEEEECC-B---------TTEEEECT
T ss_pred             CCCeEEEEE-ECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCC---CcEEEEEecC-C---------Ccccccce
Confidence            334334433 3333344799999999997 789998899999999875   3332222111 0         01123457


Q ss_pred             ceEEEcCCCC-EEEEEC-----------CCCEEEEEc--CCCc-EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCC
Q 014345           84 KGLTVDDRGN-IYIADT-----------MNMAIRKIS--DSGV-TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSS  148 (426)
Q Consensus        84 ~GIaVd~dG~-LYVADt-----------~N~rIrk~d--~g~V-stIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~  148 (426)
                      .+++++++|+ +|++..           ...++..++  .+.+ .++..                  -..|.+++ ++++
T Consensus        85 ~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~------------------~~~~~~~~-~s~d  145 (337)
T d1pbyb_          85 FGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA------------------PRQITMLA-WARD  145 (337)
T ss_dssp             TCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC------------------CSSCCCEE-ECTT
T ss_pred             eeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccc------------------cCCceEEE-EcCC
Confidence            8999999886 666653           234555555  2222 22211                  12477888 4566


Q ss_pred             C-eEEEEECCCCeEEEEEcCCCc
Q 014345          149 C-SLLVIDRGNRAIREIQLHFDD  170 (426)
Q Consensus       149 G-~LYVaDsgN~rIr~I~l~~~~  170 (426)
                      | .||+++   +.+..++.....
T Consensus       146 g~~l~~~~---~~~~~~d~~~~~  165 (337)
T d1pbyb_         146 GSKLYGLG---RDLHVMDPEAGT  165 (337)
T ss_dssp             SSCEEEES---SSEEEEETTTTE
T ss_pred             CCEEEEEc---CCcceeeeecCc
Confidence            6 566654   335566665443

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=97.07  E-value=0.0051  Score=54.31  Aligned_cols=66  Identities=12%  Similarity=0.155  Sum_probs=46.2

Q ss_pred             CceEEEEcCCCc-EEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCC-EEEEEC
Q 014345           22 EPYSVEVLPGGE-LLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIADT   99 (426)
Q Consensus        22 ~P~GIaVd~dG~-LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~-LYVADt   99 (426)
                      .|.+|++++||. |||++..+++|..+|.....  .+..+.... .         .......|.++++++||. +||++.
T Consensus        41 ~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~--~~~~~~~~~-~---------~~~~~~~~~~v~~s~DG~~l~v~~~  108 (346)
T d1jmxb_          41 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCK--NTFHANLSS-V---------PGEVGRSMYSFAISPDGKEVYATVN  108 (346)
T ss_dssp             SSCEEEECTTSSEEEEEETTTTEEEEEETTTTE--EEEEEESCC-S---------TTEEEECSSCEEECTTSSEEEEEEE
T ss_pred             CcceEEECCCCCEEEEEECCCCcEEEEeCccCe--eeeeecccc-c---------ccccCCceEEEEEecCCCEEEEEec
Confidence            699999999997 78999999999999987532  111221110 0         111244699999999986 888864

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.94  E-value=0.021  Score=54.91  Aligned_cols=143  Identities=5%  Similarity=-0.104  Sum_probs=84.0

Q ss_pred             CceEEEEcCCCc-EEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEc----CCCC-EE
Q 014345           22 EPYSVEVLPGGE-LLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVD----DRGN-IY   95 (426)
Q Consensus        22 ~P~GIaVd~dG~-LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd----~dG~-LY   95 (426)
                      .|++|+++|||. ||++.. .+.|.+++.+....-.+..+. .                ...|.++++.    +||+ ||
T Consensus        63 ~~~~v~fSpDG~~l~~~s~-dg~v~~~d~~t~~~~~~~~i~-~----------------~~~~~~~~~s~~~SpDG~~l~  124 (432)
T d1qksa2          63 AVHISRLSASGRYLFVIGR-DGKVNMIDLWMKEPTTVAEIK-I----------------GSEARSIETSKMEGWEDKYAI  124 (432)
T ss_dssp             CEEEEEECTTSCEEEEEET-TSEEEEEETTSSSCCEEEEEE-C----------------CSEEEEEEECCSTTCTTTEEE
T ss_pred             CeeEEEECCCCCEEEEEcC-CCCEEEEEeeCCCceEEEEEe-c----------------CCCCCCeEEecccCCCCCEEE
Confidence            699999999998 677764 578999987642111111111 1                2236666665    4787 78


Q ss_pred             EEECCCCEEEEEc--CCCc-EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceE
Q 014345           96 IADTMNMAIRKIS--DSGV-TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCA  172 (426)
Q Consensus        96 VADt~N~rIrk~d--~g~V-stIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~~  172 (426)
                      |+...++.|+.+|  .+.+ .++.+.......      ..-..-..+..|++..+...++|+....+.|..++.......
T Consensus       125 vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~------~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~  198 (432)
T d1qksa2         125 AGAYWPPQYVIMDGETLEPKKIQSTRGMTYDE------QEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNL  198 (432)
T ss_dssp             EEEEETTEEEEEETTTCCEEEEEECCEECTTT------CCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEE
T ss_pred             EEcCCCCeEEEEeCccccceeeeccCCccccc------eeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcc
Confidence            9999899999999  4443 444432111100      000111234556643334467888888899999987654332


Q ss_pred             ---eecCCCCcceEEEEec
Q 014345          173 ---YQYGSSFPLGIAVLLA  188 (426)
Q Consensus       173 ---~~~~~g~P~GIAv~~g  188 (426)
                         .......|.++++...
T Consensus       199 ~~~~i~~g~~~~~~~~spd  217 (432)
T d1qksa2         199 KTTEISAERFLHDGGLDGS  217 (432)
T ss_dssp             EEEEEECCSSEEEEEECTT
T ss_pred             eEEEEcccCccccceECCC
Confidence               2233345667766533

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.87  E-value=0.021  Score=49.90  Aligned_cols=94  Identities=11%  Similarity=0.007  Sum_probs=59.8

Q ss_pred             CcceEEEcCCCC-EEEEECCCCEEEEEc--CCCc-EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEEC-
Q 014345           82 HPKGLTVDDRGN-IYIADTMNMAIRKIS--DSGV-TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDR-  156 (426)
Q Consensus        82 ~P~GIaVd~dG~-LYVADt~N~rIrk~d--~g~V-stIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDs-  156 (426)
                      .|.+|++++||+ |||+...++.|.++|  .+.+ .++....            .......+.++++.++...||++.. 
T Consensus        35 ~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~------------~~~~~~~~~~v~~s~dg~~l~~~~~~  102 (337)
T d1pbyb_          35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLST------------PEERVKSLFGAALSPDGKTLAIYESP  102 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCB------------TTEEEECTTCEEECTTSSEEEEEEEE
T ss_pred             CccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCC------------CcccccceeeEEEcCCCcEEEEeecC
Confidence            488999999997 789999999999999  4443 3333211            0112345778885444456777764 


Q ss_pred             ----------CCCeEEEEEcCCCceEe-ecCCCCcceEEEEe
Q 014345          157 ----------GNRAIREIQLHFDDCAY-QYGSSFPLGIAVLL  187 (426)
Q Consensus       157 ----------gN~rIr~I~l~~~~~~~-~~~~g~P~GIAv~~  187 (426)
                                ...++..++.....+.. ......|.++++..
T Consensus       103 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~  144 (337)
T d1pbyb_         103 VRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWAR  144 (337)
T ss_dssp             EEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECT
T ss_pred             CcceeeeccccccceeeccccCCeEEEeccccCCceEEEEcC
Confidence                      34667777776655433 23344577777653

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.25  E-value=0.12  Score=48.32  Aligned_cols=142  Identities=8%  Similarity=-0.047  Sum_probs=80.9

Q ss_pred             CCceEEEEcCCCc-EEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEc----CCCC-E
Q 014345           21 IEPYSVEVLPGGE-LLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVD----DRGN-I   94 (426)
Q Consensus        21 ~~P~GIaVd~dG~-LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd----~dG~-L   94 (426)
                      ..|++|+++|||. ||++. ..+.|.+++.++..   ...++--.              ....|.+++++    +||+ |
T Consensus        62 ~~~~~vafSPDGk~l~~~~-~d~~v~vwd~~t~~---~~~~~~i~--------------~~~~~~~~~~s~~~spDG~~l  123 (426)
T d1hzua2          62 YAVHISRMSASGRYLLVIG-RDARIDMIDLWAKE---PTKVAEIK--------------IGIEARSVESSKFKGYEDRYT  123 (426)
T ss_dssp             SSEEEEEECTTSCEEEEEE-TTSEEEEEETTSSS---CEEEEEEE--------------CCSEEEEEEECCSTTCTTTEE
T ss_pred             CCeeEEEECCCCCEEEEEe-CCCCEEEEEccCCc---eeEEEEEe--------------CCCCCcceEEeeeecCCCCEE
Confidence            3699999999998 56666 45789999987532   22211100              01235566655    5776 7


Q ss_pred             EEEECCCCEEEEEc--CCCc-EEEeCCccCCCCCCCCCCcccccC-CCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCc
Q 014345           95 YIADTMNMAIRKIS--DSGV-TTIAGGKWGRGGGHVDGPSEDAKF-SNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDD  170 (426)
Q Consensus        95 YVADt~N~rIrk~d--~g~V-stIaGg~~g~~~G~~dG~~~~a~f-~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~  170 (426)
                      |++...++.|+.++  .+.+ .++.+.....     ..  ..... ..+..++.......+++++.+.+.|..+......
T Consensus       124 ~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~-----~~--~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~  196 (426)
T d1hzua2         124 IAGAYWPPQFAIMDGETLEPKQIVSTRGMTV-----DT--QTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDID  196 (426)
T ss_dssp             EEEEEESSEEEEEETTTCCEEEEEECCEECS-----SS--CCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSS
T ss_pred             EEeecCCCeEEEEcCCccceeEEeeccCCCc-----cc--eeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEecccc
Confidence            89888889999998  3333 3444321110     00  00000 1234455444455788889888998888765432


Q ss_pred             ---eEeecCCCCcceEEEEe
Q 014345          171 ---CAYQYGSSFPLGIAVLL  187 (426)
Q Consensus       171 ---~~~~~~~g~P~GIAv~~  187 (426)
                         .........|.++++..
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~  216 (426)
T d1hzua2         197 NLTVTSIGAAPFLADGGWDS  216 (426)
T ss_dssp             SCEEEEEECCSSEEEEEECT
T ss_pred             ceeeEEeccCCccEeeeECC
Confidence               12223334466666553

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=95.88  E-value=0.097  Score=47.76  Aligned_cols=48  Identities=8%  Similarity=0.041  Sum_probs=35.6

Q ss_pred             CCCeeEEECCCCe--EEEEECCCCeEEEEEcCCCceEeecC-CCCcceEEEE
Q 014345          138 NDFDVVYIGSSCS--LLVIDRGNRAIREIQLHFDDCAYQYG-SSFPLGIAVL  186 (426)
Q Consensus       138 ~P~gIa~vd~~G~--LYVaDsgN~rIr~I~l~~~~~~~~~~-~g~P~GIAv~  186 (426)
                      .|.+++ +.++|+  ||++..+.+.|++++.....+...-. ...|.+|++.
T Consensus       315 ~~~~~a-~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g~~P~~l~~~  365 (368)
T d1mdah_         315 DSDAII-AAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGPESLSVQ  365 (368)
T ss_dssp             EECEEE-ECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCCCEEECC
T ss_pred             ceeEEE-ECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEECCCCCCEEEEe
Confidence            477788 566763  89999999999999998766554333 3459998874

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.69  E-value=0.13  Score=44.35  Aligned_cols=109  Identities=6%  Similarity=0.054  Sum_probs=69.3

Q ss_pred             CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCC
Q 014345           22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN  101 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N  101 (426)
                      ...+|+++++|+++++-...+.|..++....  ..+..+....              .......++++++|+++++-..+
T Consensus       228 ~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~--~~~~~~~~~~--------------~~~~i~~~~~s~~~~~l~~g~~d  291 (340)
T d1tbga_         228 DINAICFFPNGNAFATGSDDATCRLFDLRAD--QELMTYSHDN--------------IICGITSVSFSKSGRLLLAGYDD  291 (340)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTT--EEEEEECCTT--------------CCSCEEEEEECSSSCEEEEEETT
T ss_pred             CeEEEEECCCCCEEEEEeCCCeEEEEeeccc--cccccccccc--------------ccCceEEEEECCCCCEEEEEECC
Confidence            4678999999988777777888888887632  1112221110              01124578999999988887778


Q ss_pred             CEEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEE
Q 014345          102 MAIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREI  164 (426)
Q Consensus       102 ~rIrk~d--~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I  164 (426)
                      +.|+.++  .+. +.++.+-.                 ..-.+|+ +.+++.++++-...+.|+..
T Consensus       292 g~i~iwd~~~~~~~~~~~~H~-----------------~~V~~l~-~s~d~~~l~s~s~Dg~v~iW  339 (340)
T d1tbga_         292 FNCNVWDALKADRAGVLAGHD-----------------NRVSCLG-VTDDGMAVATGSWDSFLKIW  339 (340)
T ss_dssp             SCEEEEETTTCCEEEEECCCS-----------------SCEEEEE-ECTTSSCEEEEETTSCEEEE
T ss_pred             CEEEEEECCCCcEEEEEcCCC-----------------CCEEEEE-EeCCCCEEEEEccCCEEEEe
Confidence            8899998  444 44443310                 1235677 56777766666566777765

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=95.62  E-value=0.19  Score=44.87  Aligned_cols=119  Identities=7%  Similarity=-0.079  Sum_probs=66.0

Q ss_pred             eEEEEcCCCc-EEEEECC---------CCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCC
Q 014345           24 YSVEVLPGGE-LLILDSA---------NSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN   93 (426)
Q Consensus        24 ~GIaVd~dG~-LYVaD~~---------n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~   93 (426)
                      .+++++|||. ||++...         .+.|..+|..+.   ++......+        ..........|.++++.++|.
T Consensus        69 ~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~---~~~~~~~~~--------~~~~~~~~~~~~~~~~s~dg~  137 (373)
T d2madh_          69 PNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTF---LPIADIELP--------DAPRFDVGPYSWMNANTPNNA  137 (373)
T ss_pred             ccEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCC---cEEEEEecC--------CcceeEeccCCCcEEEEeCCC
Confidence            3799999997 7777643         356777877642   222222111        001112245688999998875


Q ss_pred             -EEEEECC-CCEEEEEcCCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCce
Q 014345           94 -IYIADTM-NMAIRKISDSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDC  171 (426)
Q Consensus        94 -LYVADt~-N~rIrk~d~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~  171 (426)
                       +||+... .+.+..++......+.                  ....|.++++......+|++...++.+..++.....+
T Consensus       138 ~~~v~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~  199 (373)
T d2madh_         138 DLLFFQFAAGPAVGLVVQGGSSDDQ------------------LLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAA  199 (373)
T ss_pred             cEEEEEEcCCCceEEeeccCCeEEE------------------EeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCcee
Confidence             5666532 3444444421111111                  1223556664444446778888888888887765443

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=95.46  E-value=0.24  Score=43.71  Aligned_cols=119  Identities=15%  Similarity=0.097  Sum_probs=70.0

Q ss_pred             ceEE-EEcCCCc-EEEEECC----CCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCC-EE
Q 014345           23 PYSV-EVLPGGE-LLILDSA----NSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IY   95 (426)
Q Consensus        23 P~GI-aVd~dG~-LYVaD~~----n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~-LY   95 (426)
                      |..+ |..|||. +||++..    .+.|+.+|.++..  .+..+-+      |            ...++++++||+ ||
T Consensus         3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~--~~~~~~~------g------------~~~~~a~SpDg~~l~   62 (355)
T d2bbkh_           3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGR--VIGMIDG------G------------FLPNPVVADDGSFIA   62 (355)
T ss_dssp             CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTE--EEEEEEE------C------------SSCEEEECTTSSCEE
T ss_pred             CcEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCc--EEEEEEC------C------------CCCceEEcCCCCEEE
Confidence            4444 3467886 8998853    3469999987522  1122211      1            122699999997 88


Q ss_pred             EEECC---------CCEEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECC-CCeEE
Q 014345           96 IADTM---------NMAIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRG-NRAIR  162 (426)
Q Consensus        96 VADt~---------N~rIrk~d--~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsg-N~rIr  162 (426)
                      |++..         .+.|+++|  .+. +.++......          .......|..+++..+...++|++.. ...+.
T Consensus        63 v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~----------~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~  132 (355)
T d2bbkh_          63 HASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAP----------RFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVG  132 (355)
T ss_dssp             EEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCC----------CCCBSCCGGGEEECTTSSEEEEEECSSSCEEE
T ss_pred             EEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcc----------eeecCCCCceEEEecCCCeeEEecCCCCceee
Confidence            88742         45799999  344 3344321110          01123468888865555578888854 45666


Q ss_pred             EEEcCCCce
Q 014345          163 EIQLHFDDC  171 (426)
Q Consensus       163 ~I~l~~~~~  171 (426)
                      .++......
T Consensus       133 ~~~~~~~~~  141 (355)
T d2bbkh_         133 VVDLEGKAF  141 (355)
T ss_dssp             EEETTTTEE
T ss_pred             eeecCCCcE
Confidence            677665443

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.42  E-value=0.099  Score=47.78  Aligned_cols=116  Identities=10%  Similarity=0.019  Sum_probs=71.1

Q ss_pred             CCc-eEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEEC
Q 014345           21 IEP-YSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADT   99 (426)
Q Consensus        21 ~~P-~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt   99 (426)
                      ..| .++++++||.++++-..++.|..++.++...-.+..+.|.        .+        .-+.|+++++|+++++=.
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH--------~~--------~V~~l~fsp~~~~l~s~s   70 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEH--------NG--------QVTGVDWAPDSNRIVTCG   70 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECC--------SS--------CEEEEEEETTTTEEEEEE
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCC--------CC--------CEEEEEECCCCCEEEEEE
Confidence            355 7999999999888777888899888764321122223222        11        136799999998776655


Q ss_pred             CCCEEEEEc--CCCcE-EEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCC
Q 014345          100 MNMAIRKIS--DSGVT-TIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHF  168 (426)
Q Consensus       100 ~N~rIrk~d--~g~Vs-tIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~  168 (426)
                      .++.|+.++  .+... ++.-...               -....+++ ..++++.+++-..++.|+.++.+.
T Consensus        71 ~D~~i~vWd~~~~~~~~~~~~~~~---------------~~~v~~i~-~~p~~~~l~~~s~d~~i~i~~~~~  126 (371)
T d1k8kc_          71 TDRNAYVWTLKGRTWKPTLVILRI---------------NRAARCVR-WAPNEKKFAVGSGSRVISICYFEQ  126 (371)
T ss_dssp             TTSCEEEEEEETTEEEEEEECCCC---------------SSCEEEEE-ECTTSSEEEEEETTSSEEEEEEET
T ss_pred             CCCeEEEEeecccccccccccccc---------------cccccccc-cccccccceeecccCcceeeeeec
Confidence            567788777  33332 2211100               01245666 466777666666677777766554

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=95.05  E-value=0.18  Score=49.67  Aligned_cols=31  Identities=6%  Similarity=0.082  Sum_probs=26.0

Q ss_pred             CCCCeeEEECCCCe-EEEEECCCCeEEEEEcCC
Q 014345          137 SNDFDVVYIGSSCS-LLVIDRGNRAIREIQLHF  168 (426)
Q Consensus       137 ~~P~gIa~vd~~G~-LYVaDsgN~rIr~I~l~~  168 (426)
                      ..|++++ ++++|. ||++....+.|.+|+...
T Consensus       258 ksPhGv~-vSPDGkyl~~~~~~~~tvsv~d~~k  289 (441)
T d1qnia2         258 KNPHGLN-TSPDGKYFIANGKLSPTVSVIAIDK  289 (441)
T ss_dssp             SSCCCEE-ECTTSCEEEEECTTSSBEEEEEGGG
T ss_pred             CCccCce-ECCCCCEEEEeCCcCCcEEEEEeeh
Confidence            4699999 577775 899999999999999764

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.94  E-value=0.36  Score=42.96  Aligned_cols=107  Identities=12%  Similarity=0.112  Sum_probs=68.8

Q ss_pred             CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCC
Q 014345           22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN  101 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N  101 (426)
                      ....++++++++++++-..++.|..++.+..   ......+.                -.....|++.++|+++++=..+
T Consensus       226 ~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~---~~~~~~~~----------------~~~i~~v~~s~~g~~l~s~s~D  286 (337)
T d1gxra_         226 QIFSLGYCPTGEWLAVGMESSNVEVLHVNKP---DKYQLHLH----------------ESCVLSLKFAYCGKWFVSTGKD  286 (337)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTSS---CEEEECCC----------------SSCEEEEEECTTSSEEEEEETT
T ss_pred             ceEEEEEcccccccceecccccccccccccc---cccccccc----------------ccccceEEECCCCCEEEEEeCC
Confidence            4677888888887666666778888877632   22222111                1124678999999988887778


Q ss_pred             CEEEEEc--CCCc-EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEc
Q 014345          102 MAIRKIS--DSGV-TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQL  166 (426)
Q Consensus       102 ~rIrk~d--~g~V-stIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l  166 (426)
                      +.|+.++  .+.. .++...                  .....++ +.+++.++++-..++.|+.+++
T Consensus       287 g~i~iwd~~~~~~~~~~~~~------------------~~v~~~~-~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         287 NLLNAWRTPYGASIFQSKES------------------SSVLSCD-ISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             SEEEEEETTTCCEEEEEECS------------------SCEEEEE-ECTTSCEEEEEETTSCEEEEEE
T ss_pred             CeEEEEECCCCCEEEEccCC------------------CCEEEEE-EeCCCCEEEEEeCCCeEEEEEE
Confidence            8999998  3332 222110                  1235666 5677877777667788888764

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=94.91  E-value=0.26  Score=43.42  Aligned_cols=122  Identities=7%  Similarity=-0.087  Sum_probs=69.1

Q ss_pred             EEEEcCCCc-EEEEECC---------CCeEEEEeCCCCcccccE-EEecCCCCcccccCCcccccccCCcceEEEcCCCC
Q 014345           25 SVEVLPGGE-LLILDSA---------NSNLYRISSSLSLYSRPK-LVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN   93 (426)
Q Consensus        25 GIaVd~dG~-LYVaD~~---------n~rI~kid~dg~~~g~v~-~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~   93 (426)
                      +++++|||. |||++..         .+.|.++|..+.   ++. .+.... ..        .......|.+++++++|+
T Consensus        51 ~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~---~~~~~~~~~~-~~--------~~~~~~~~~~~~~s~dg~  118 (355)
T d2bbkh_          51 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTL---LPTADIELPD-AP--------RFLVGTYPWMTSLTPDGK  118 (355)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC---CEEEEEEETT-CC--------CCCBSCCGGGEEECTTSS
T ss_pred             ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCC---CEEEEEecCC-cc--------eeecCCCCceEEEecCCC
Confidence            799999997 8888642         357889988752   222 222110 00        011245689999999986


Q ss_pred             -EEEEECC-CCEEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCC
Q 014345           94 -IYIADTM-NMAIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHF  168 (426)
Q Consensus        94 -LYVADt~-N~rIrk~d--~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~  168 (426)
                       +||++.. ...+..++  .+. +.++......          .......+..+++..+...+++.......+..++...
T Consensus       119 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~  188 (355)
T d2bbkh_         119 TLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCY----------HIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEV  188 (355)
T ss_dssp             EEEEEECSSSCEEEEEETTTTEEEEEEECCSEE----------EEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCC
T ss_pred             eeEEecCCCCceeeeeecCCCcEeeEEecCCcc----------eEeecCCcceEEEcCCCCEEEEEecCCCeEEEEeccc
Confidence             7888865 45666676  333 3344321100          0001123344554444456777777777777776543

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=94.88  E-value=0.098  Score=47.73  Aligned_cols=73  Identities=5%  Similarity=-0.132  Sum_probs=48.4

Q ss_pred             EEEEcCCCc-EEEEECC---------CCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCC-
Q 014345           25 SVEVLPGGE-LLILDSA---------NSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-   93 (426)
Q Consensus        25 GIaVd~dG~-LYVaD~~---------n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~-   93 (426)
                      ++++.+||. ||++...         .+.|..+|..+.   +....+..+.+..        ......|.++++.+||+ 
T Consensus        69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~---~~~~~i~~p~~~~--------~~~g~~p~~~a~SpDGk~  137 (368)
T d1mdah_          69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTF---LPIADIELPDAPR--------FSVGPRVHIIGNCASSAC  137 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTC---CEEEEEEETTSCS--------CCBSCCTTSEEECTTSSC
T ss_pred             cceECCCCCEEEEEcccCccccccccCCeEEEEECCCC---cEeeeecCCccce--------ecccCCccceEECCCCCE
Confidence            789999987 8887632         245889988742   2222221110100        01134589999999996 


Q ss_pred             EEEEECCCCEEEEEc
Q 014345           94 IYIADTMNMAIRKIS  108 (426)
Q Consensus        94 LYVADt~N~rIrk~d  108 (426)
                      |||++...+.|+.+|
T Consensus       138 l~va~~~~~~v~~~d  152 (368)
T d1mdah_         138 LLFFLFGSSAAAGLS  152 (368)
T ss_dssp             EEEEECSSSCEEEEE
T ss_pred             EEEEeCCCCeEEEEE
Confidence            999998888999998

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=94.71  E-value=0.31  Score=46.25  Aligned_cols=126  Identities=10%  Similarity=-0.027  Sum_probs=81.2

Q ss_pred             CCceEEEEcC----CCc-EEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCC-E
Q 014345           21 IEPYSVEVLP----GGE-LLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-I   94 (426)
Q Consensus        21 ~~P~GIaVd~----dG~-LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~-L   94 (426)
                      ..|.++++++    ||. |||+....+.|..++..+..  .+.++.+....  .  +.. ....-..+.+|+++++|. +
T Consensus       105 ~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~--~~~~~~~~~~~--~--~~~-~~~~~~~~~~v~~s~dg~~~  177 (432)
T d1qksa2         105 SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLE--PKKIQSTRGMT--Y--DEQ-EYHPEPRVAAILASHYRPEF  177 (432)
T ss_dssp             SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCC--EEEEEECCEEC--T--TTC-CEESCCCEEEEEECSSSSEE
T ss_pred             CCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCcccc--ceeeeccCCcc--c--cce-eccCCCceeEEEECCCCCEE
Confidence            3688888754    887 78999889999999987532  22333322100  0  000 001123356788888886 6


Q ss_pred             EEEECCCCEEEEEc--CCC---cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCC-eEEEEECCCCeEEEEEcCC
Q 014345           95 YIADTMNMAIRKIS--DSG---VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSC-SLLVIDRGNRAIREIQLHF  168 (426)
Q Consensus        95 YVADt~N~rIrk~d--~g~---VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G-~LYVaDsgN~rIr~I~l~~  168 (426)
                      +|+-...+.|..++  +..   +.++..+                  ..|++++ ++++| .||++....+.|..++...
T Consensus       178 ~vs~~~~~~i~~~d~~~~~~~~~~~i~~g------------------~~~~~~~-~spdg~~~~va~~~~~~v~v~d~~~  238 (432)
T d1qksa2         178 IVNVKETGKILLVDYTDLNNLKTTEISAE------------------RFLHDGG-LDGSHRYFITAANARNKLVVIDTKE  238 (432)
T ss_dssp             EEEETTTTEEEEEETTCSSEEEEEEEECC------------------SSEEEEE-ECTTSCEEEEEEGGGTEEEEEETTT
T ss_pred             EEEEccCCeEEEEEccCCCcceEEEEccc------------------Cccccce-ECCCCCEEEEeccccceEEEeeccc
Confidence            78888889999998  333   2233221                  1478888 56777 4899999999999999887


Q ss_pred             CceE
Q 014345          169 DDCA  172 (426)
Q Consensus       169 ~~~~  172 (426)
                      ....
T Consensus       239 ~~~~  242 (432)
T d1qksa2         239 GKLV  242 (432)
T ss_dssp             TEEE
T ss_pred             ceEE
Confidence            5554

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.17  E-value=0.21  Score=46.60  Aligned_cols=115  Identities=9%  Similarity=-0.082  Sum_probs=69.8

Q ss_pred             CceEEEEcCC--CcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCC-EEEEE
Q 014345           22 EPYSVEVLPG--GELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIAD   98 (426)
Q Consensus        22 ~P~GIaVd~d--G~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~-LYVAD   98 (426)
                      .|..+.++.|  +.++|+...+++|..+|..+..  .+..+.+.                 ..|.+|++++||+ ||++.
T Consensus        20 ~p~~~~~~~d~~~~~~V~~~~dg~v~vwD~~t~~--~~~~l~~g-----------------~~~~~vafSPDGk~l~~~~   80 (426)
T d1hzua2          20 RPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKK--IVKVIDTG-----------------YAVHISRMSASGRYLLVIG   80 (426)
T ss_dssp             SCSSCCSCCCGGGEEEEEETTTTEEEEEETTTCS--EEEEEECC-----------------SSEEEEEECTTSCEEEEEE
T ss_pred             CCCcccccCCCCeEEEEEEcCCCEEEEEECCCCc--EEEEEeCC-----------------CCeeEEEECCCCCEEEEEe
Confidence            4555566554  3367889999999999998532  23333221                 1389999999998 67776


Q ss_pred             CCCCEEEEEc--CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEE---ECCCC-eEEEEECCCCeEEEEEcCCCce
Q 014345           99 TMNMAIRKIS--DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVY---IGSSC-SLLVIDRGNRAIREIQLHFDDC  171 (426)
Q Consensus        99 t~N~rIrk~d--~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~---vd~~G-~LYVaDsgN~rIr~I~l~~~~~  171 (426)
                      . ++.|+++|  .+....++--..               ...|.++++   ..++| .|+++...++.|+.++.....+
T Consensus        81 ~-d~~v~vwd~~t~~~~~~~~i~~---------------~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~  143 (426)
T d1hzua2          81 R-DARIDMIDLWAKEPTKVAEIKI---------------GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEP  143 (426)
T ss_dssp             T-TSEEEEEETTSSSCEEEEEEEC---------------CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCE
T ss_pred             C-CCCEEEEEccCCceeEEEEEeC---------------CCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccce
Confidence            5 56888888  343322211000               012333331   12344 5778887788888888776554

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.14  E-value=1.4  Score=39.90  Aligned_cols=134  Identities=11%  Similarity=0.004  Sum_probs=76.6

Q ss_pred             CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCC
Q 014345           22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN  101 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N  101 (426)
                      ...++++.++| ++++-..++.|+.++.....  .+..+-.. ....++         -..-+.|++.++|++.++-...
T Consensus       186 ~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~--~~~~~~~~-~~l~~h---------~~~V~~l~~spdg~~l~sgs~D  252 (393)
T d1sq9a_         186 FATSVDISERG-LIATGFNNGTVQISELSTLR--PLYNFESQ-HSMINN---------SNSIRSVKFSPQGSLLAIAHDS  252 (393)
T ss_dssp             CCCEEEECTTS-EEEEECTTSEEEEEETTTTE--EEEEEECC-C---CC---------CCCEEEEEECSSTTEEEEEEEE
T ss_pred             cEEEEEECCCC-EEEEEeCCCcEEEEeecccc--cccccccc-cccccc---------cceEEEcccccccceeeeecCC
Confidence            46789999988 55566678899999887421  11222111 011111         1224679999999987775433


Q ss_pred             ---CEEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceEe
Q 014345          102 ---MAIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAY  173 (426)
Q Consensus       102 ---~rIrk~d--~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~~~  173 (426)
                         ..|+.++  .+. +.++.......    .......+.-..-++|+ +.+++.++++-...+.|+..+.....+..
T Consensus       253 ~t~~~i~lwd~~~g~~~~~l~~~~~~~----~~~~~~~gH~~~V~~l~-fspd~~~l~S~s~D~~v~vWd~~~g~~~~  325 (393)
T d1sq9a_         253 NSFGCITLYETEFGERIGSLSVPTHSS----QASLGEFAHSSWVMSLS-FNDSGETLCSAGWDGKLRFWDVKTKERIT  325 (393)
T ss_dssp             TTEEEEEEEETTTCCEEEEECBC------------CCBSBSSCEEEEE-ECSSSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred             CCcceeeecccccceeeeeeccccccc----cceeeeecccCceeeec-cCCCCCeeEEECCCCEEEEEECCCCCEEE
Confidence               3577777  444 44443211100    00000011112346677 57788999988889999999988766543

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=94.06  E-value=0.1  Score=50.95  Aligned_cols=67  Identities=13%  Similarity=0.200  Sum_probs=45.1

Q ss_pred             cCCcceEEEcCCCCEEEEECCCCEEEEEc--CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECC----CCeEEE
Q 014345           80 MNHPKGLTVDDRGNIYIADTMNMAIRKIS--DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGS----SCSLLV  153 (426)
Q Consensus        80 Ln~P~GIaVd~dG~LYVADt~N~rIrk~d--~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~----~G~LYV  153 (426)
                      |.+|++|++.++|+|||++...++|++++  ++...++.+.....  ....|   +   ..-.+|+ +++    ++.|||
T Consensus        26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~--~~~~g---e---~GLLgia-~~Pdf~~n~~iYv   96 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIV--NDADG---Q---NGLLGFA-FHPDFKNNPYIYI   96 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCC--CCTTS---S---CSEEEEE-ECTTTTTSCEEEE
T ss_pred             CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccc--cccCC---C---CceeeEE-eCCCCccCCEEEE
Confidence            88999999999999999998889999998  34456666532111  00011   0   0224677 454    589999


Q ss_pred             EE
Q 014345          154 ID  155 (426)
Q Consensus       154 aD  155 (426)
                      +-
T Consensus        97 sy   98 (450)
T d1crua_          97 SG   98 (450)
T ss_dssp             EE
T ss_pred             EE
Confidence            74

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=94.05  E-value=0.12  Score=50.81  Aligned_cols=67  Identities=19%  Similarity=0.254  Sum_probs=47.2

Q ss_pred             CceEEEEc--CCCc-EEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCC-EEEE
Q 014345           22 EPYSVEVL--PGGE-LLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIA   97 (426)
Q Consensus        22 ~P~GIaVd--~dG~-LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~-LYVA   97 (426)
                      .|+....+  +||. |||+|..++||.+|+.+.   .+..-++-.+.              ...|+|+++.++|+ +||+
T Consensus        71 hP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t---~k~~~ii~iP~--------------g~gphgi~~spdg~t~YV~  133 (441)
T d1qnia2          71 HPHISMTDGRYDGKYLFINDKANTRVARIRLDI---MKTDKITHIPN--------------VQAIHGLRLQKVPKTNYVF  133 (441)
T ss_dssp             CCEEEEETTEEEEEEEEEEETTTTEEEEEETTT---TEEEEEEECTT--------------CCCEEEEEECCSSBCCEEE
T ss_pred             CCCcceecccCCCCEEEEEcCCCCEEEEEECCC---CcEeeEEecCC--------------CCCccceEEeccCCEEEEE
Confidence            47777664  5886 999999999999999984   33333322210              22499999999886 7888


Q ss_pred             ECCCCEEE
Q 014345           98 DTMNMAIR  105 (426)
Q Consensus        98 Dt~N~rIr  105 (426)
                      ....+.+.
T Consensus       134 ~~~~~~v~  141 (441)
T d1qnia2         134 CNAEFVIP  141 (441)
T ss_dssp             EEECSCEE
T ss_pred             eccCCccc
Confidence            76655553

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=93.97  E-value=0.34  Score=41.71  Aligned_cols=74  Identities=8%  Similarity=0.048  Sum_probs=45.3

Q ss_pred             cceEEEcCCCCEEEEECCCCEEEEEc-CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeE
Q 014345           83 PKGLTVDDRGNIYIADTMNMAIRKIS-DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAI  161 (426)
Q Consensus        83 P~GIaVd~dG~LYVADt~N~rIrk~d-~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rI  161 (426)
                      ...|++++++..+++-..++.|+.++ ..+.....-...   .+         .-....+|+ +.+++.++++-..++.|
T Consensus       182 i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~---~~---------h~~~v~~l~-~s~~~~~l~sgs~dg~i  248 (299)
T d1nr0a2         182 ITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSW---TF---------HTAKVACVS-WSPDNVRLATGSLDNSV  248 (299)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCC---CC---------CSSCEEEEE-ECTTSSEEEEEETTSCE
T ss_pred             ccccccccccccccccccccccccccccccccccccccc---cc---------ccccccccc-ccccccceEEEcCCCEE
Confidence            46789999988777766678888888 322111100000   00         011235666 56778777766667899


Q ss_pred             EEEEcCCC
Q 014345          162 REIQLHFD  169 (426)
Q Consensus       162 r~I~l~~~  169 (426)
                      +.+++...
T Consensus       249 ~iwd~~~~  256 (299)
T d1nr0a2         249 IVWNMNKP  256 (299)
T ss_dssp             EEEETTCT
T ss_pred             EEEECCCC
Confidence            99998754

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=93.94  E-value=1.4  Score=38.87  Aligned_cols=49  Identities=12%  Similarity=0.106  Sum_probs=36.1

Q ss_pred             CCCeeEEECCCCe--EEEEECCCCeEEEEEcCCCceE-eecC-CCCcceEEEEe
Q 014345          138 NDFDVVYIGSSCS--LLVIDRGNRAIREIQLHFDDCA-YQYG-SSFPLGIAVLL  187 (426)
Q Consensus       138 ~P~gIa~vd~~G~--LYVaDsgN~rIr~I~l~~~~~~-~~~~-~g~P~GIAv~~  187 (426)
                      .|.+++ +.++|+  ||++....+.|++++....... .... ...|..|++..
T Consensus       319 ~~~~~a-~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~  371 (373)
T d2madh_         319 DVDAIS-VAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMN  371 (373)
T ss_pred             CeeEEE-ECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEec
Confidence            477888 577775  7889999999999999865553 3333 35688888763

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=93.51  E-value=1.2  Score=38.61  Aligned_cols=68  Identities=10%  Similarity=0.073  Sum_probs=46.2

Q ss_pred             CceEEEEcCCCcE-EEE-ECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEEC
Q 014345           22 EPYSVEVLPGGEL-LIL-DSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADT   99 (426)
Q Consensus        22 ~P~GIaVd~dG~L-YVa-D~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt   99 (426)
                      ...+++++|||.. +++ +.....|+.++.++   +.+..+.+.                -.....++++++|+.+++-.
T Consensus        44 ~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~---~~~~~~~~~----------------~~~v~~~~~spdg~~l~~~~  104 (360)
T d1k32a3          44 RIRYVRRGGDTKVAFIHGTREGDFLGIYDYRT---GKAEKFEEN----------------LGNVFAMGVDRNGKFAVVAN  104 (360)
T ss_dssp             CEEEEEECSSSEEEEEEEETTEEEEEEEETTT---CCEEECCCC----------------CCSEEEEEECTTSSEEEEEE
T ss_pred             CEEEEEECCCCCEEEEEEcCCCCEEEEEECCC---CcEEEeeCC----------------CceEEeeeecccccccceec
Confidence            5788999999974 343 33334677777775   333333222                12356899999999888777


Q ss_pred             CCCEEEEEc
Q 014345          100 MNMAIRKIS  108 (426)
Q Consensus       100 ~N~rIrk~d  108 (426)
                      ..+.++.++
T Consensus       105 ~~~~~~~~~  113 (360)
T d1k32a3         105 DRFEIMTVD  113 (360)
T ss_dssp             TTSEEEEEE
T ss_pred             ccccccccc
Confidence            788899888

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=93.23  E-value=1.8  Score=38.28  Aligned_cols=124  Identities=12%  Similarity=0.115  Sum_probs=72.0

Q ss_pred             CceEEEEcCCCc-EEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECC
Q 014345           22 EPYSVEVLPGGE-LLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTM  100 (426)
Q Consensus        22 ~P~GIaVd~dG~-LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~  100 (426)
                      ...+|+++++|+ ++++-...+.|..++...   +........      +         -...+.|+++++|+++++=..
T Consensus       148 ~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~---~~~~~~~~~------~---------~~~i~~v~~~p~~~~l~~~~~  209 (311)
T d1nr0a1         148 AMNSVDFKPSRPFRIISGSDDNTVAIFEGPP---FKFKSTFGE------H---------TKFVHSVRYNPDGSLFASTGG  209 (311)
T ss_dssp             CEEEEEECSSSSCEEEEEETTSCEEEEETTT---BEEEEEECC------C---------SSCEEEEEECTTSSEEEEEET
T ss_pred             ccccccccccceeeecccccccccccccccc---ccccccccc------c---------cccccccccCccccccccccc
Confidence            356788888776 466666667788887763   222222211      0         112468999999998777666


Q ss_pred             CCEEEEEc--CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceEe
Q 014345          101 NMAIRKIS--DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAY  173 (426)
Q Consensus       101 N~rIrk~d--~g~VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~~~  173 (426)
                      .+.|+.++  ++..............++.         ..-..|+ +.+++.++++-...+.|+.++.....+..
T Consensus       210 d~~v~~~d~~~~~~~~~~~~~~~~~~~h~---------~~V~~~~-~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~  274 (311)
T d1nr0a1         210 DGTIVLYNGVDGTKTGVFEDDSLKNVAHS---------GSVFGLT-WSPDGTKIASASADKTIKIWNVATLKVEK  274 (311)
T ss_dssp             TSCEEEEETTTCCEEEECBCTTSSSCSSS---------SCEEEEE-ECTTSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred             ccccccccccccccccccccccccccccc---------ccccccc-cCCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence            77888888  3332222221111101111         1234666 46677776666667789988887766543

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.96  E-value=2.4  Score=37.18  Aligned_cols=114  Identities=6%  Similarity=-0.011  Sum_probs=67.0

Q ss_pred             CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCC
Q 014345           22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN  101 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N  101 (426)
                      ...++++.++|+.+++-...+.|..++...   ++.....+.                -.....|+++++++++++-..+
T Consensus       185 ~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~---~~~~~~~~~----------------~~~i~~l~~~~~~~~l~~~~~d  245 (337)
T d1gxra_         185 GASCIDISNDGTKLWTGGLDNTVRSWDLRE---GRQLQQHDF----------------TSQIFSLGYCPTGEWLAVGMES  245 (337)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTT---TEEEEEEEC----------------SSCEEEEEECTTSSEEEEEETT
T ss_pred             cccccccccccccccccccccccccccccc---ceeeccccc----------------ccceEEEEEcccccccceeccc
Confidence            355677777776555555566777776653   121111111                1124678899998877766667


Q ss_pred             CEEEEEc-CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceE
Q 014345          102 MAIRKIS-DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCA  172 (426)
Q Consensus       102 ~rIrk~d-~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~~  172 (426)
                      +.|+.++ ... .....+.                 -.....|+ +.+++.++++-..++.|+.++.....+.
T Consensus       246 ~~i~i~d~~~~~~~~~~~~-----------------~~~i~~v~-~s~~g~~l~s~s~Dg~i~iwd~~~~~~~  300 (337)
T d1gxra_         246 SNVEVLHVNKPDKYQLHLH-----------------ESCVLSLK-FAYCGKWFVSTGKDNLLNAWRTPYGASI  300 (337)
T ss_dssp             SCEEEEETTSSCEEEECCC-----------------SSCEEEEE-ECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred             ccccccccccccccccccc-----------------ccccceEE-ECCCCCEEEEEeCCCeEEEEECCCCCEE
Confidence            8888888 322 3222221                 01234566 4667777776666788888887765544

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=92.56  E-value=1.2  Score=38.48  Aligned_cols=107  Identities=12%  Similarity=0.137  Sum_probs=65.3

Q ss_pred             EEcC-CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCC-EEE-EECCCCE
Q 014345           27 EVLP-GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYI-ADTMNMA  103 (426)
Q Consensus        27 aVd~-dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~-LYV-ADt~N~r  103 (426)
                      .++| ||+++++.. .++|+.++.++   +.+..+ +..                .....+++.+||+ |++ ++.....
T Consensus         9 ~fSP~dG~~~a~~~-~g~v~v~d~~~---~~~~~~-~~~----------------~~v~~~~~spDg~~l~~~~~~~g~~   67 (360)
T d1k32a3           9 DFSPLDGDLIAFVS-RGQAFIQDVSG---TYVLKV-PEP----------------LRIRYVRRGGDTKVAFIHGTREGDF   67 (360)
T ss_dssp             EEEECGGGCEEEEE-TTEEEEECTTS---SBEEEC-SCC----------------SCEEEEEECSSSEEEEEEEETTEEE
T ss_pred             cccCCCCCEEEEEE-CCeEEEEECCC---CcEEEc-cCC----------------CCEEEEEECCCCCEEEEEEcCCCCE
Confidence            3566 788766653 56888888775   333332 221                1256899999996 333 4444456


Q ss_pred             EEEEc-CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceE
Q 014345          104 IRKIS-DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCA  172 (426)
Q Consensus       104 Irk~d-~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~~  172 (426)
                      |+.++ .++ +..+.+.                 -.....++ +.++|..+++-...+.|+.++..+..+.
T Consensus        68 v~v~d~~~~~~~~~~~~-----------------~~~v~~~~-~spdg~~l~~~~~~~~~~~~~~~~~~~~  120 (360)
T d1k32a3          68 LGIYDYRTGKAEKFEEN-----------------LGNVFAMG-VDRNGKFAVVANDRFEIMTVDLETGKPT  120 (360)
T ss_dssp             EEEEETTTCCEEECCCC-----------------CCSEEEEE-ECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred             EEEEECCCCcEEEeeCC-----------------CceEEeee-ecccccccceecccccccccccccccee
Confidence            77887 333 4444321                 11245666 5778877777777888888888776554

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=92.49  E-value=1.4  Score=39.10  Aligned_cols=83  Identities=16%  Similarity=0.142  Sum_probs=48.8

Q ss_pred             ceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCCC
Q 014345           23 PYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNM  102 (426)
Q Consensus        23 P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N~  102 (426)
                      ..+++++++|+++++-...+.|..++.....  ....+-....-..|+         -..-..|+++++|+++++=..++
T Consensus       192 i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~--~~~~~~~~~~~~~~h---------~~~V~~~~~s~~~~~l~tgs~Dg  260 (311)
T d1nr0a1         192 VHSVRYNPDGSLFASTGGDGTIVLYNGVDGT--KTGVFEDDSLKNVAH---------SGSVFGLTWSPDGTKIASASADK  260 (311)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTCC--EEEECBCTTSSSCSS---------SSCEEEEEECTTSSEEEEEETTS
T ss_pred             ccccccCcccccccccccccccccccccccc--ccccccccccccccc---------cccccccccCCCCCEEEEEeCCC
Confidence            4688888888877666566777777765311  111111110011111         11235789999999888766678


Q ss_pred             EEEEEc--CCC-cEEEe
Q 014345          103 AIRKIS--DSG-VTTIA  116 (426)
Q Consensus       103 rIrk~d--~g~-VstIa  116 (426)
                      .|+.+|  ++. +.++-
T Consensus       261 ~v~iwd~~t~~~~~~l~  277 (311)
T d1nr0a1         261 TIKIWNVATLKVEKTIP  277 (311)
T ss_dssp             EEEEEETTTTEEEEEEE
T ss_pred             eEEEEECCCCcEEEEEE
Confidence            899998  444 34453

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=91.22  E-value=1.2  Score=42.27  Aligned_cols=84  Identities=15%  Similarity=0.184  Sum_probs=55.3

Q ss_pred             EecCCCCCCCceEEEEcC-CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcC-
Q 014345           13 VFDGSKLGIEPYSVEVLP-GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD-   90 (426)
Q Consensus        13 v~~g~~l~~~P~GIaVd~-dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~-   90 (426)
                      ......+...+.|+++|. ++.|||++- +-.|++++.+.........+.... +  +.        -..-|.||++-. 
T Consensus       172 lvr~f~~~~q~EGCVvDde~~~LyisEE-~~Giw~~~a~~~~~~~~~~i~~~~-g--~~--------l~~D~EGlaiy~~  239 (353)
T d1h6la_         172 KVRAFKMNSQTEGMAADDEYGSLYIAEE-DEAIWKFSAEPDGGSNGTVIDRAD-G--RH--------LTPDIEGLTIYYA  239 (353)
T ss_dssp             EEEEEECSSCEEEEEEETTTTEEEEEET-TTEEEEEESSTTSCSCCEEEEECS-S--SS--------CCSCEEEEEEEEC
T ss_pred             eeeccCCCCccceEEEeCCCCcEEEecC-ccceEEEEeccCCCccceeeeccc-C--cc--------ccCCccccEEEEc
Confidence            333444556899999998 577999995 668999987633211222222111 0  00        123489998753 


Q ss_pred             ---CCCEEEEECCCCEEEEEc
Q 014345           91 ---RGNIYIADTMNMAIRKIS  108 (426)
Q Consensus        91 ---dG~LYVADt~N~rIrk~d  108 (426)
                         +|-|++++.++++..+++
T Consensus       240 ~~~~GylivSsQG~n~f~vyd  260 (353)
T d1h6la_         240 ADGKGYLLASSQGNSSYAIYE  260 (353)
T ss_dssp             GGGCEEEEEEEGGGTEEEEEE
T ss_pred             CCCCeEEEEEcCCCCeEEEEe
Confidence               467999999999999998

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.60  E-value=3.7  Score=34.60  Aligned_cols=115  Identities=12%  Similarity=0.112  Sum_probs=68.4

Q ss_pred             eEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCCCE
Q 014345           24 YSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMA  103 (426)
Q Consensus        24 ~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N~r  103 (426)
                      ..+...+.+.++++-...+.|..++.....  .+..+.+.                -.....|+++++|+++++-..++.
T Consensus       188 ~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~--~~~~~~~h----------------~~~i~~v~~~p~~~~l~s~s~d~~  249 (340)
T d1tbga_         188 MSLSLAPDTRLFVSGACDASAKLWDVREGM--CRQTFTGH----------------ESDINAICFFPNGNAFATGSDDAT  249 (340)
T ss_dssp             EEEEECTTSSEEEEEETTTEEEEEETTTTE--EEEEECCC----------------SSCEEEEEECTTSSEEEEEETTSC
T ss_pred             eeeccccccceeEEeecCceEEEEECCCCc--EEEEEeCC----------------CCCeEEEEECCCCCEEEEEeCCCe
Confidence            344455566677776677777777765311  11222111                112467899999998877777888


Q ss_pred             EEEEc-CCC--cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceE
Q 014345          104 IRKIS-DSG--VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCA  172 (426)
Q Consensus       104 Irk~d-~g~--VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~~~~~  172 (426)
                      |+.++ ...  +.++....               .......++ +.+++.++++-..++.|+.+++....+.
T Consensus       250 i~~~~~~~~~~~~~~~~~~---------------~~~~i~~~~-~s~~~~~l~~g~~dg~i~iwd~~~~~~~  305 (340)
T d1tbga_         250 CRLFDLRADQELMTYSHDN---------------IICGITSVS-FSKSGRLLLAGYDDFNCNVWDALKADRA  305 (340)
T ss_dssp             EEEEETTTTEEEEEECCTT---------------CCSCEEEEE-ECSSSCEEEEEETTSCEEEEETTTCCEE
T ss_pred             EEEEeeccccccccccccc---------------ccCceEEEE-ECCCCCEEEEEECCCEEEEEECCCCcEE
Confidence            88888 322  22222110               011234566 5677877777777888999988765543

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.59  E-value=2.1  Score=37.75  Aligned_cols=69  Identities=14%  Similarity=0.114  Sum_probs=42.5

Q ss_pred             CceEEEEcCC-CcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEc---CCCCEEEE
Q 014345           22 EPYSVEVLPG-GELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVD---DRGNIYIA   97 (426)
Q Consensus        22 ~P~GIaVd~d-G~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd---~dG~LYVA   97 (426)
                      ...++++.|+ +.++++-...+.|..++.....  .+..+.+..    ..            ..++.+.   ++|.++++
T Consensus       207 ~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~--~~~~l~~~~----~~------------v~~~~~s~~~~dg~~l~s  268 (325)
T d1pgua1         207 FVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE--FLKYIEDDQ----EP------------VQGGIFALSWLDSQKFAT  268 (325)
T ss_dssp             CEEEEEECSTTCCEEEEEETTCCEEEEETTTCC--EEEECCBTT----BC------------CCSCEEEEEESSSSEEEE
T ss_pred             ccEEeeeccccceeccccccccceeeeeecccc--ccccccccc----cc------------cccceeeeeccCCCEEEE
Confidence            4678899986 5777777778889998876321  122222211    00            1122222   57777777


Q ss_pred             ECCCCEEEEEc
Q 014345           98 DTMNMAIRKIS  108 (426)
Q Consensus        98 Dt~N~rIrk~d  108 (426)
                      =..++.|+.++
T Consensus       269 ~s~D~~i~iwd  279 (325)
T d1pgua1         269 VGADATIRVWD  279 (325)
T ss_dssp             EETTSEEEEEE
T ss_pred             EeCCCeEEEEE
Confidence            77788899998

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.35  E-value=2.7  Score=37.52  Aligned_cols=116  Identities=9%  Similarity=-0.074  Sum_probs=67.8

Q ss_pred             ceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCCC
Q 014345           23 PYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNM  102 (426)
Q Consensus        23 P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N~  102 (426)
                      -.+|+++++|+++++-...+.|+.++.+..   ......-.    .++         -.....++++++++.+++-..++
T Consensus        54 V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~---~~~~~~~~----~~~---------~~~v~~i~~~p~~~~l~~~s~d~  117 (371)
T d1k8kc_          54 VTGVDWAPDSNRIVTCGTDRNAYVWTLKGR---TWKPTLVI----LRI---------NRAARCVRWAPNEKKFAVGSGSR  117 (371)
T ss_dssp             EEEEEEETTTTEEEEEETTSCEEEEEEETT---EEEEEEEC----CCC---------SSCEEEEEECTTSSEEEEEETTS
T ss_pred             EEEEEECCCCCEEEEEECCCeEEEEeeccc---cccccccc----ccc---------cccccccccccccccceeecccC
Confidence            578899999997776666778888776532   21111110    000         11256889999998777666667


Q ss_pred             EEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCC
Q 014345          103 AIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHF  168 (426)
Q Consensus       103 rIrk~d--~g~-VstIaGg~~g~~~G~~dG~~~~a~f~~P~gIa~vd~~G~LYVaDsgN~rIr~I~l~~  168 (426)
                      .|+.++  ... ...........             -.....++ ..+++.++++-..++.|+.++...
T Consensus       118 ~i~i~~~~~~~~~~~~~~~~~~~-------------~~~v~~v~-~~p~~~~l~s~s~D~~v~v~~~~~  172 (371)
T d1k8kc_         118 VISICYFEQENDWWVCKHIKKPI-------------RSTVLSLD-WHPNSVLLAAGSCDFKCRIFSAYI  172 (371)
T ss_dssp             SEEEEEEETTTTEEEEEEECTTC-------------CSCEEEEE-ECTTSSEEEEEETTSCEEEEECCC
T ss_pred             cceeeeeeccccccccccccccc-------------cccccccc-ccccccceeccccCcEEEEEeecc
Confidence            666655  333 22221100000             01234566 467787777776778899888754

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.08  E-value=5.4  Score=34.74  Aligned_cols=83  Identities=11%  Similarity=0.031  Sum_probs=46.9

Q ss_pred             CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCc---ccccccCCcceEEEcCCCCEEEEE
Q 014345           22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGK---PREARMNHPKGLTVDDRGNIYIAD   98 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~---a~~A~Ln~P~GIaVd~dG~LYVAD   98 (426)
                      .-.+|++++||+++++-. .+.|..++.....  .+..+.+.... .......   .....-..-..|++.++|+++++-
T Consensus        64 ~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~  139 (388)
T d1erja_          64 VVCCVKFSNDGEYLATGC-NKTTQVYRVSDGS--LVARLSDDSAA-NKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATG  139 (388)
T ss_dssp             CCCEEEECTTSSEEEEEC-BSCEEEEETTTCC--EEEEECC------------------CCCCBEEEEEECTTSSEEEEE
T ss_pred             cEEEEEECCCCCEEEEEe-CCeEEEEEecccc--eEeeecccccc-cccccccccccccCCCCCEEEEEECCCCCcceec
Confidence            457899999999877764 6788888876321  12222221100 0000000   000001113578999999988877


Q ss_pred             CCCCEEEEEc
Q 014345           99 TMNMAIRKIS  108 (426)
Q Consensus        99 t~N~rIrk~d  108 (426)
                      ..++.|+.++
T Consensus       140 ~~dg~v~i~~  149 (388)
T d1erja_         140 AEDRLIRIWD  149 (388)
T ss_dssp             ETTSCEEEEE
T ss_pred             cccccccccc
Confidence            7788899888

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=87.17  E-value=7.4  Score=32.59  Aligned_cols=41  Identities=15%  Similarity=0.158  Sum_probs=28.5

Q ss_pred             EEEEEecCCCCCCCceEEEEcCCCcEEEEECCCCeEEEEeCCC
Q 014345            9 TVETVFDGSKLGIEPYSVEVLPGGELLILDSANSNLYRISSSL   51 (426)
Q Consensus         9 tv~tv~~g~~l~~~P~GIaVd~dG~LYVaD~~n~rI~kid~dg   51 (426)
                      ++..+..|..-  .-..|++++||+++++-...+.|..++.+.
T Consensus         3 ~~~~~~~GH~~--~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~   43 (299)
T d1nr0a2           3 SIDQVRYGHNK--AITALSSSADGKTLFSADAEGHINSWDIST   43 (299)
T ss_dssp             EEEEEECCCSS--CEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             ccceEcCCCCC--CcEEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence            34555565553  367889999998777766677888887653

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.49  E-value=8.2  Score=33.46  Aligned_cols=68  Identities=13%  Similarity=0.091  Sum_probs=44.0

Q ss_pred             ceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCCC
Q 014345           23 PYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNM  102 (426)
Q Consensus        23 P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N~  102 (426)
                      -.+|++.++|+++++-..++.|..++.....  .+....+.                -.....+++.+++...++-..++
T Consensus       124 V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~--~~~~~~~h----------------~~~v~~~~~~~~~~~~~~~~~~~  185 (388)
T d1erja_         124 IRSVCFSPDGKFLATGAEDRLIRIWDIENRK--IVMILQGH----------------EQDIYSLDYFPSGDKLVSGSGDR  185 (388)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTTE--EEEEECCC----------------SSCEEEEEECTTSSEEEEEETTS
T ss_pred             EEEEEECCCCCcceecccccccccccccccc--cccccccc----------------cccccccccccccccccccccce
Confidence            3578999999988877788889888876321  11222111                11235677777777665555677


Q ss_pred             EEEEEc
Q 014345          103 AIRKIS  108 (426)
Q Consensus       103 rIrk~d  108 (426)
                      .|+.++
T Consensus       186 ~i~~~d  191 (388)
T d1erja_         186 TVRIWD  191 (388)
T ss_dssp             EEEEEE
T ss_pred             eeeeee
Confidence            888888

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.97  E-value=2.9  Score=34.49  Aligned_cols=69  Identities=9%  Similarity=0.083  Sum_probs=46.4

Q ss_pred             CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCC
Q 014345           22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN  101 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N  101 (426)
                      .-.++++.++|+++++-...+.|..++.....  .+..+.+..                ..-+.|+++++|.++++=..+
T Consensus       249 ~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~h~----------------~~V~~~~~s~~~~~l~s~s~D  310 (317)
T d1vyhc1         249 WVRGVLFHSGGKFILSCADDKTLRVWDYKNKR--CMKTLNAHE----------------HFVTSLDFHKTAPYVVTGSVD  310 (317)
T ss_dssp             CEEEEEECSSSSCEEEEETTTEEEEECCTTSC--CCEEEECCS----------------SCEEEEEECSSSSCEEEEETT
T ss_pred             CEEEEEECCCCCEEEEEECCCeEEEEECCCCc--EEEEEcCCC----------------CCEEEEEEcCCCCEEEEEeCC
Confidence            45788999999877776678889999876321  233333221                124678899988877766667


Q ss_pred             CEEEEEc
Q 014345          102 MAIRKIS  108 (426)
Q Consensus       102 ~rIrk~d  108 (426)
                      +.|+.++
T Consensus       311 g~i~iWd  317 (317)
T d1vyhc1         311 QTVKVWE  317 (317)
T ss_dssp             SEEEEEC
T ss_pred             CeEEEeC
Confidence            7787764

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.33  E-value=13  Score=30.11  Aligned_cols=69  Identities=12%  Similarity=0.149  Sum_probs=47.7

Q ss_pred             CceEEEEcCCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccccCCcccccccCCcceEEEcCCCCEEEEECCC
Q 014345           22 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN  101 (426)
Q Consensus        22 ~P~GIaVd~dG~LYVaD~~n~rI~kid~dg~~~g~v~~vaG~~~G~~G~~dG~a~~A~Ln~P~GIaVd~dG~LYVADt~N  101 (426)
                      .-.+|+++++|+++++-...+.|..++.+...  .+..+-+.                -..-..+++++++.++++-...
T Consensus        19 ~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~--~~~~~~~h----------------~~~V~~~~~~~~~~~~~~~~~~   80 (317)
T d1vyhc1          19 PVTRVIFHPVFSVMVSASEDATIKVWDYETGD--FERTLKGH----------------TDSVQDISFDHSGKLLASCSAD   80 (317)
T ss_dssp             CEEEEEECSSSSEEEEEESSSCEEEEETTTCC--CCEEECCC----------------SSCEEEEEECTTSSEEEEEETT
T ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC--EEEEEeCC----------------CCcEEEEeeecccccccccccc
Confidence            35789999999988887778899999876421  22333221                1124678999999888777666


Q ss_pred             CEEEEEc
Q 014345          102 MAIRKIS  108 (426)
Q Consensus       102 ~rIrk~d  108 (426)
                      ..+...+
T Consensus        81 ~~~~~~~   87 (317)
T d1vyhc1          81 MTIKLWD   87 (317)
T ss_dssp             SCCCEEE
T ss_pred             ccccccc
Confidence            6666666